-- dump date 20140619_063130 -- class Genbank::CDS -- table cds_note -- id note YP_003156547.1 KEGG: dde:Dde_2320 DnaA family protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; ATPase AAA YP_003156548.1 KEGG: dde:Dde_1421 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; metal-dependent phosphohydrolase HD sub domain; PAS fold domain protein; SMART: PAS domain containing protein YP_003156549.1 PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: dde:Dde_1420 hypothetical protein YP_003156550.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: hemolysin D; KEGG: dvl:Dvul_1976 HlyD family type I secretion membrane fusion protein YP_003156551.1 KEGG: dvl:Dvul_1977 ABC transporter related; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA YP_003156552.1 PFAM: von Willebrand factor type A; Hemolysin-type calcium-binding region; peptidase domain protein; SMART: von Willebrand factor type A; KEGG: pmy:Pmen_1806 hemolysin-type calcium-binding region YP_003156553.1 KEGG: ret:RHE_CH02163 autoaggregation protein (adhering protein) YP_003156554.1 PFAM: Hemolysin-type calcium-binding region; KEGG: paa:Paes_0782 von Willebrand factor type A YP_003156556.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dde:Dde_1415 type I secretion outer membrane protein, TolC YP_003156558.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain protein; KEGG: dde:Dde_2669 ferrous iron transport protein B YP_003156559.1 PFAM: FeoA family protein; KEGG: sfu:Sfum_2492 FeoA family protein YP_003156561.1 PFAM: Domain of unknown function DUF1791; KEGG: afu:AF0913 hypothetical protein YP_003156562.1 PFAM: beta-lactamase domain protein; KEGG: sth:STH2476 cyclase/dehydrase YP_003156563.1 KEGG: dvl:Dvul_0429 hypothetical protein YP_003156564.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: tcx:Tcr_0935 Mg2+ transporter protein, CorA- like YP_003156565.1 KEGG: dps:DP1790 two-component system response regulator; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver YP_003156566.1 PFAM: chemotaxis protein CheB; KEGG: gme:Gmet_2640 chemotaxis protein CheB YP_003156567.1 KEGG: dps:DP1792 chemotaxis protein methyltransferase (CheR); PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_003156568.1 KEGG: vvy:VVA0933 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003156569.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: dvl:Dvul_0663 Mg2+ transporter protein, CorA family protein YP_003156570.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cti:RALTA_A0340 lysis exporter YP_003156571.1 PFAM: formylmethanofuran dehydrogenase subunit E region; molybdopterin binding domain; KEGG: dde:Dde_0685 tungsten formylmethanofuran dehydrogenase family protein/molybdopterin binding protein YP_003156572.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dps:DP0979 methyl-accepting chemotaxis protein YP_003156573.1 KEGG: sfu:Sfum_0282 hypothetical protein YP_003156574.1 KEGG: saz:Sama_2887 GGDEF domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003156576.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sat:SYN_00731 NAD(FAD)-utilizing dehydrogenases YP_003156577.1 PFAM: UspA domain protein; KEGG: mes:Meso_0179 UspA YP_003156578.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: aeh:Mlg_2073 TRAP transporter, 4TM/12TM fusion protein YP_003156579.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: aeh:Mlg_2072 TRAP transporter solute receptor TAXI family protein YP_003156580.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mrd:Mrad2831_2417 peptidase M20 YP_003156581.1 KEGG: tte:TTE1204 lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_003156582.1 PFAM: protein of unknown function DUF201; KEGG: rde:RD1_0845 biotin carboxylase-like protein YP_003156584.1 KEGG: sat:SYN_02593 GerE family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; Sigma-70 region 4 type 2; regulatory protein LuxR; PAS fold domain protein; PAS fold-4 domain protein; SMART: regulatory protein LuxR; PAS domain containing protein; PAC repeat-containing protein YP_003156585.1 TIGRFAM: pyridoxine biosynthesis protein; PFAM: Vitamin B6 biosynthesis protein; thiazole biosynthesis family protein; KEGG: snz1; pyridoxine biosynthesis protein ; K06215 pyridoxine biosynthesis protein YP_003156586.1 PFAM: SNO glutamine amidotransferase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: gka:GK0012 glutamine amidotransferase subunit PdxT YP_003156587.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dar:Daro_3097 methyl-accepting chemotaxis sensory transducer YP_003156588.1 PFAM: amidohydrolase; KEGG: pgn:PGN_1411 N-ethylammeline chlorohydrolase YP_003156589.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: dvl:Dvul_1671 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_003156590.1 PFAM: Radical SAM domain protein; KEGG: dvl:Dvul_1670 radical SAM domain-containing protein YP_003156592.1 KEGG: dde:Dde_1672 phosphoribosylaminoimidazole synthetase; TIGRFAM: phosphoribosylformylglycinamidine cyclo- ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003156593.1 PFAM: Radical SAM domain protein; KEGG: dvl:Dvul_1667 radical SAM domain-containing protein YP_003156594.1 PFAM: ribosomal protein S9; KEGG: dde:Dde_2608 30S ribosomal protein S9 YP_003156595.1 TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; KEGG: pcr:Pcryo_1747 50S ribosomal protein L13 YP_003156596.1 KEGG: dvl:Dvul_0727 hypothetical protein YP_003156597.1 PFAM: CBS domain containing protein; KEGG: dde:Dde_2604 CBS domain-containing protein YP_003156598.1 KEGG: dvl:Dvul_3022 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; PAC repeat- containing protein; histidine kinase A domain protein; PAS domain containing protein YP_003156599.1 KEGG: dvu:DVU1191 ATP-dependent protease La, TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; ATPase AAA YP_003156600.1 TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: dvl:Dvul_1864 DNA repair protein RadC YP_003156601.1 KEGG: dvl:Dvul_1863 DNA polymerase III, delta YP_003156602.1 KEGG: dde:Dde_2440 lipoprotein YP_003156603.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: dde:Dde_2439 leucyl-tRNA synthetase YP_003156604.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: lip:LI0153 transcription termination factor YP_003156605.1 KEGG: dde:Dde_2437 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase YP_003156606.1 KEGG: dde:Dde_2436 GTP cyclohydrolase II / 3,4- dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II YP_003156607.1 TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: dde:Dde_2435 riboflavin synthase subunit alpha YP_003156608.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; KEGG: dde:Dde_2434 5-amino-6-(5- phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase YP_003156609.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dde:Dde_2433 cytidine/deoxycytidylate deaminase family protein YP_003156610.1 PFAM: glycine hydroxymethyltransferase; KEGG: dvl:Dvul_1854 serine hydroxymethyltransferase YP_003156611.1 TIGRFAM: 3-oxoacyl-ACP synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: dvl:Dvul_1853 beta-ketoacyl synthase YP_003156612.1 TIGRFAM: ACP; PFAM: phosphopantetheine-binding; KEGG: dvl:Dvul_1852 ACP YP_003156613.1 TIGRFAM: 3-oxoacyl-ACP reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dvu:DVU1206 3-oxoacyl-ACP reductase YP_003156614.1 KEGG: dde:Dde_2428 3-oxoacyl-ACP synthase III; TIGRFAM: 3-oxoacyl-ACP synthase III; PFAM: 3-Oxoacyl-[ACP ACP] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein ACP] synthase III; chalcone and stilbene synthase domain protein YP_003156615.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: dvl:Dvul_1849 glycerol-3-phosphate acyltransferase PlsX YP_003156616.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: dvl:Dvul_1848 ribosomal protein L32 YP_003156617.1 PFAM: protein of unknown function DUF177; KEGG: dvl:Dvul_1847 hypothetical protein YP_003156618.1 TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: dvl:Dvul_1846 50S ribosomal protein L28 YP_003156619.1 PFAM: manganese and iron superoxide dismutase; KEGG: dps:DP0316 superoxide dismutase [Fe] YP_003156620.1 PFAM: RNA methylase; THUMP domain protein; KEGG: dol:Dole_2035 RNA methylase YP_003156621.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: dvu:DVU2552 glutamyl-tRNA synthetase YP_003156622.1 PFAM: nitrogen-fixing NifU domain protein; protein of unknown function DUF59; KEGG: dvl:Dvul_0695 NifU domain-containing protein YP_003156623.1 KEGG: sfu:Sfum_0349 hypothetical protein YP_003156624.1 PFAM: glutaredoxin; KEGG: sfu:Sfum_0348 glutaredoxin YP_003156625.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: amr:AM1_4475 aminotransferase YP_003156626.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: cau:Caur_0202 transporter DMT superfamily protein YP_003156627.1 TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: psb:Psyr_4743 monofunctional biosynthetic peptidoglycan transglycosylase YP_003156628.1 PFAM: nitroreductase; KEGG: pca:Pcar_2047 nitroreductase YP_003156629.1 TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; KEGG: dde:Dde_0240 fumarate hydratase YP_003156630.1 PFAM: glycosyl transferase family 2; KEGG: dvu:DVU0872 glycosyl transferase, group 2 family protein YP_003156631.1 KEGG: dde:Dde_2338 thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase YP_003156632.1 KEGG: dvu:DVU2141 nucleic acid-binding protein, TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type; SMART: metal-dependent phosphohydrolase HD region YP_003156633.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_1224 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003156634.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dvl:Dvul_1223 2-oxoglutarate ferredoxin oxidoreductase subunit alpha YP_003156635.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dde:Dde_1638 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_003156636.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dvl:Dvul_1221 pyruvate ferredoxin/flavodoxin oxidoreductase YP_003156637.1 KEGG: dvl:Dvul_1090 stationary-phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE YP_003156638.1 KEGG: dvl:Dvul_1089 fructose-1,6-bisphosphate aldolase, class II; TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II YP_003156639.1 KEGG: dde:Dde_2342 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_003156640.1 PFAM: AAA-4 family protein; KEGG: aav:Aave_0004 transcriptional regulator YP_003156641.1 KEGG: dvl:Dvul_1715 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_003156642.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: dvl:Dvul_1716 6-pyruvoyl tetrahydropterin synthase YP_003156643.1 TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: dvl:Dvul_1627 D-tyrosyl-tRNA deacylase YP_003156644.1 KEGG: dde:Dde_1715 CgeB family protein YP_003156645.1 PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1714 heptosyltransferase family protein YP_003156646.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: gur:Gura_3497 RND efflux system outer membrane lipoprotein YP_003156647.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux- 1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: ppd:Ppro_0330 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_003156648.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: hemolysin D; KEGG: gsu:GSU2697 multidrug resistance protein YP_003156649.1 PFAM: regulatory protein TetR; KEGG: glo:Glov_0223 transcriptional regulator, TetR family YP_003156650.1 PFAM: NUDIX hydrolase; KEGG: dvl:Dvul_0997 NUDIX hydrolase YP_003156651.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; KEGG: dde:Dde_2286 glycogen/starch synthase, ADP- glucose type YP_003156652.1 PFAM: glycoside hydrolase family 13 domain protein; KEGG: dol:Dole_0850 glycoside hydrolase family protein YP_003156653.1 PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: dvl:Dvul_0992 cupin 2 domain-containing protein YP_003156654.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dvu:DVU2250 AMP-binding protein YP_003156655.1 KEGG: dde:Dde_0075 hypothetical protein YP_003156656.1 KEGG: dvl:Dvul_1632 CgeB family protein YP_003156657.1 KEGG: dde:Dde_2094 hypothetical protein YP_003156658.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: ote:Oter_4156 CDP- glycerol:poly(glycerophosphate) glycerophosphotransferase YP_003156659.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1485 glycosyl transferase, group 2 family protein YP_003156660.1 PFAM: protein of unknown function DUF23; glycosyl transferase family 2; KEGG: dde:Dde_2772 hypothetical protein YP_003156661.1 KEGG: dde:Dde_0438 UDP-N-acetylglucosamine pyrophosphorylase related protein YP_003156662.1 PFAM: glycosyl transferase family 2; CDP- glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: rca:Rcas_3636 glycosyl transferase family protein YP_003156663.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: gur:Gura_3169 glycosyl transferase, group 1 YP_003156664.1 KEGG: dvu:DVU2899 hypothetical protein YP_003156665.1 PFAM: Radical SAM domain protein; KEGG: tdn:Suden_0195 radical SAM family protein YP_003156666.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mgm:Mmc1_0495 methyltransferase type 12 YP_003156667.1 TIGRFAM: methyltransferase FkbM family; KEGG: ade:Adeh_2528 methyltransferase FkbM YP_003156668.1 KEGG: kcr:Kcr_0841 O-methyltransferase-like protein YP_003156669.1 KEGG: gbm:Gbem_1778 asparagine synthase (glutamine- hydrolyzing); TIGRFAM: asparagine synthase (glutamine- hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_003156670.1 PFAM: glycosyl transferase group 1; KEGG: mlo:mll4797 contains weak similarity to sugar transferase YP_003156671.1 PFAM: Methyltransferase type 11; KEGG: bce:BC0310 methyltransferase YP_003156672.1 PFAM: glycosyl transferase family 2; KEGG: ppd:Ppro_2105 polysaccharide biosynthesis protein YP_003156673.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: dvl:Dvul_0782 NAD-dependent epimerase/dehydratase YP_003156674.1 TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; KEGG: hya:HY04AAS1_1590 nucleotidyltransferase substrate binding protein, HI0074 family YP_003156675.1 PFAM: DNA polymerase beta domain protein region; KEGG: mac:MA0099 hypothetical protein YP_003156676.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3645 TPR repeat-containing protein YP_003156677.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: dvl:Dvul_0268 carbamoyl phosphate synthase small subunit YP_003156678.1 KEGG: dvl:Dvul_0267 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase YP_003156679.1 PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: dde:Dde_0367 3-deoxy-D-manno-octulosonic-acid transferase YP_003156680.1 KEGG: dde:Dde_0366 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP- grasp; protein of unknown function DUF201; phosphoribosylglycinamide synthetase YP_003156681.1 SMART: metal-dependent phosphohydrolase HD region; KEGG: dvl:Dvul_2650 metal dependent phosphohydrolase YP_003156682.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: ppd:Ppro_2779 hydrogenase assembly chaperone HypC/HupF YP_003156683.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: dvl:Dvul_2657 hydrogenase formation HypD protein YP_003156684.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: dvl:Dvul_2656 hydrogenase expression/formation protein HypE YP_003156685.1 PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; KEGG: amr:AM1_2401 exonuclease YP_003156686.1 KEGG: dvu:DVU1225 hypothetical protein YP_003156687.1 PFAM: DHHA2 domain protein; phosphoesterase RecJ domain protein; KEGG: shm:Shewmr7_0413 manganese-dependent inorganic pyrophosphatase YP_003156688.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: dde:Dde_1776 PTS system, IIB component YP_003156689.1 PFAM: PTS system fructose subfamily IIA component; KEGG: dde:Dde_1775 PTS system, IIA component YP_003156690.1 PFAM: conserved hypothetical protein; KEGG: dvu:DVU1631 hypothetical protein YP_003156691.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: dde:Dde_1773 PTS IIA-like nitrogen- regulatory protein PtsN YP_003156692.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: dde:Dde_1772 SSU ribosomal protein S30P / sigma 54 modulation protein YP_003156693.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; KEGG: dvu:DVU1628 RNA polymerase sigma-54 factor YP_003156694.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_1770 ATPase YP_003156695.1 TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: dde:Dde_1769 hypothetical protein YP_003156696.1 PFAM: protein of unknown function DUF1239; KEGG: dde:Dde_1768 hypothetical protein YP_003156697.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: dde:Dde_1767 phosphatase KdsC YP_003156698.1 TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: dvl:Dvul_1510 2-dehydro-3- deoxyphosphooctonate aldolase YP_003156699.1 KEGG: dde:Dde_1765 CTP synthetase; TIGRFAM: CTP synthase; PFAM: CTP synthase-like; glutamine amidotransferase class-I YP_003156700.1 KEGG: dde:Dde_1764 phosphoribosylformylglycinamidine synthase I YP_003156701.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dde:Dde_1779 tRNA-adenosine deaminase YP_003156702.1 PFAM: HipA domain protein; KEGG: bln:Blon_1946 HipA domain protein YP_003156703.1 SMART: helix-turn-helix domain protein; KEGG: rsq:Rsph17025_4195 hypothetical protein YP_003156704.1 KEGG: sat:SYN_00668 hypothetical protein YP_003156705.1 PFAM: Desulfoferrodoxin Dfx domain protein; KEGG: mbn:Mboo_0079 desulfoferrodoxin Dfx domain- containing protein YP_003156706.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: sat:SYN_02561 outer membrane OmpA family protein YP_003156707.1 KEGG: dde:Dde_0097 hypothetical protein YP_003156708.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: csc:Csac_1860 NADH dehydrogenase (ubiquinone), 24 kDa subunit YP_003156709.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: hmo:HM1_1744 proton-translocating NADH- ubiquinone oxidoreductase, chain F YP_003156710.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; ferredoxin; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: mta:Moth_2312 formate dehydrogenase subunit alpha YP_003156711.1 PFAM: protein of unknown function DUF1566; KEGG: dde:Dde_1619 hypothetical protein YP_003156712.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: sun:SUN_0114 hypothetical protein YP_003156713.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dsy:DSY4782 oxidoreductase iron- sulfur subunit YP_003156714.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: mta:Moth_0450 formate dehydrogenase YP_003156715.1 KEGG: maq:Maqu_1914 CBS domain-containing protein YP_003156716.1 PFAM: type IV pilus assembly PilZ YP_003156717.1 TIGRFAM: UV-endonuclease UvdE; PFAM: UV-endonuclease UvdE; KEGG: pca:Pcar_1346 UV damage endonuclease YP_003156718.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: dvu:DVU2906 UmuC protein YP_003156719.1 PFAM: peptidase S24 and S26 domain protein; KEGG: dvl:Dvul_0458 prophage repressor YP_003156720.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfu:Sfum_3195 molybdopterin oxidoreductase YP_003156722.1 KEGG: amr:AM1_0197 two-component hybrid histidine kinase sensor and regulator; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein YP_003156723.1 KEGG: dvl:Dvul_3021 hypothetical protein YP_003156724.1 KEGG: dvu:DVU1563 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold- 3 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; ATP-binding region ATPase domain protein YP_003156725.1 PFAM: AAA-4 family protein; KEGG: tdn:Suden_0947 transcriptional regulator YP_003156726.1 KEGG: lme:LEUM_1319 branched-chain amino acid aminotransferase YP_003156727.1 KEGG: pmo:Pmob_1133 glucose-6-phosphate 1- dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase YP_003156728.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: vha:VIBHAR_05113 hypothetical protein YP_003156729.1 KEGG: dde:Dde_0093 hypothetical protein YP_003156730.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dde:Dde_0092 hydantoinase/oxoprolinase family protein YP_003156731.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dde:Dde_1792 pyruvate ferredoxin oxidoreductase, alpha subunit YP_003156732.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dde:Dde_1793 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate YP_003156733.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: hch:HCH_04404 parvulin-like peptidyl-prolyl isomerase YP_003156734.1 KEGG: dvl:Dvul_2877 eIF-2B alpha/beta/delta-related uncharacterized proteins; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_003156735.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: dde:Dde_0062 GTP-binding protein EngA YP_003156736.1 TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: dvu:DVU3197 branched-chain amino acid aminotransferase YP_003156737.1 KEGG: dde:Dde_0066 DNA polymerase III, tau subunit; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: ATPase AAA central domain protein; SMART: ATPase AAA YP_003156738.1 PFAM: conserved hypothetical protein; KEGG: pth:PTH_0052 hypothetical protein YP_003156739.1 TIGRFAM: recombination protein RecR; PFAM: Zinc finger C4-type, RecR; KEGG: dvl:Dvul_0187 recombination protein RecR YP_003156740.1 TIGRFAM: helicase, RecD/TraA family; KEGG: dau:Daud_1393 RecD/TraA family helicase YP_003156741.1 TIGRFAM: trigger factor; PFAM: trigger factor domain protein; trigger factor domain; peptidylprolyl isomerase FKBP-type; KEGG: dvl:Dvul_1735 trigger factor YP_003156742.1 KEGG: dvl:Dvul_1734 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP YP_003156743.1 KEGG: dvl:Dvul_1733 ATP-dependent protease ATP- binding subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; ATPase AAA central domain protein; SMART: ATPase AAA YP_003156744.1 KEGG: dvl:Dvul_1732 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; ATPase AAA YP_003156745.1 KEGG: aav:Aave_0065 methyltransferase type 12 YP_003156746.1 PFAM: SNARE associated Golgi protein; KEGG: pca:Pcar_1428 hypothetical protein YP_003156747.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: neu:NE0621 hypothetical protein YP_003156749.1 KEGG: shm:Shewmr7_1972 hypothetical protein YP_003156750.1 KEGG: dvl:Dvul_2208 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003156751.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1151 metal dependent phosphohydrolase YP_003156752.1 PFAM: protein of unknown function DUF161; KEGG: dde:Dde_2520 hypothetical protein YP_003156753.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pca:Pcar_1402 GNAT family acetyltransferase YP_003156754.1 KEGG: dde:Dde_0189 L-lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_003156755.1 TIGRFAM: phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; PEP- utilizing protein; KEGG: syn:slr0301 phosphoenolpyruvate synthase YP_003156756.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: pca:Pcar_2560 Na+/phosphate symporter YP_003156757.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: dde:Dde_3113 PAS/PAC sensor signal transduction histidine kinase YP_003156758.1 PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_3114 metal dependent phosphohydrolase YP_003156760.1 KEGG: sfu:Sfum_2550 hydroxylamine oxidase YP_003156761.1 PFAM: NERD domain protein; KEGG: syp:SYNPCC7002_A0334 hypothetical protein YP_003156762.1 KEGG: aoe:Clos_1889 hypothetical protein YP_003156763.1 PFAM: transposase IS3/IS911 family protein; KEGG: dvu:DVU0556 ISDvu3, transposase OrfA YP_003156764.1 PFAM: Integrase catalytic region; KEGG: bpl:BURPS1106A_3886 transposase B YP_003156765.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: sfu:Sfum_2600 transposase IS116/IS110/IS902 family protein YP_003156766.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sfu:Sfum_1907 transcriptional regulator, LysR family YP_003156767.1 TIGRFAM: hypothetical protein; KEGG: glo:Glov_3529 hypothetical protein YP_003156768.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dvl:Dvul_1234 PfpI family intracellular peptidase YP_003156769.1 PFAM: HipA domain protein; KEGG: dvu:DVUA0152 hypothetical protein YP_003156770.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: dvl:Dvul_2959 DNA-binding protein YP_003156771.1 KEGG: ppd:Ppro_2608 hypothetical protein YP_003156772.1 PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1433 heptosyltransferase family protein YP_003156773.1 PFAM: glycosyl transferase group 1; KEGG: dvl:Dvul_0615 glycosyl transferase, group 1 YP_003156774.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1656 glycosyl transferase, group 1 family protein YP_003156775.1 PFAM: glycosyl transferase family 2; KEGG: sfu:Sfum_1811 glycosyl transferase, family 2 YP_003156776.1 PFAM: periplasmic glucan biosynthesis protein MdoG; KEGG: shw:Sputw3181_0924 glucan biosynthesis protein D YP_003156777.1 KEGG: dde:Dde_2352 hypothetical protein YP_003156778.1 PFAM: protein of unknown function DUF181; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dvl:Dvul_1028 hypothetical protein YP_003156779.1 PFAM: protein of unknown function DUF853 NPT hydrolase KEGG: gme:Gmet_0767 protein of unknown function DUF853, NPT hydrolase YP_003156781.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: dde:Dde_2345 TraR/DksA family transcriptional regulator YP_003156782.1 PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: dde:Dde_2344 hypothetical protein YP_003156783.1 KEGG: dvl:Dvul_2372 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003156785.1 PFAM: PhoH family protein; KEGG: dvu:DVU1881 PhoH family protein YP_003156786.1 PFAM: protein of unknown function UPF0054; KEGG: dvl:Dvul_1281 hypothetical protein YP_003156787.1 PFAM: protein of unknown function DUF181; KEGG: dvl:Dvul_1835 hypothetical protein YP_003156788.1 KEGG: dvl:Dvul_2125 lipoprotein YP_003156789.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: dde:Dde_2532 ornithine carbamoyltransferase YP_003156790.1 KEGG: dde:Dde_2531 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase YP_003156791.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: dde:Dde_2530 argininosuccinate lyase YP_003156792.1 KEGG: dvl:Dvul_2062 cytochrome c family protein YP_003156793.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dps:DP1898 methyl-accepting chemotaxis protein (TlpB) YP_003156794.1 PFAM: protein of unknown function DUF534; KEGG: dps:DP3100 hypothetical protein YP_003156795.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: dde:Dde_2963 amidohydrolase family protein YP_003156796.1 KEGG: dde:Dde_1513 FtsH peptidase; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003156797.1 KEGG: dde:Dde_1514 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_003156798.1 PFAM: protein of unknown function DUF147; KEGG: dde:Dde_1515 hypothetical protein YP_003156799.1 PFAM: YbbR family protein; KEGG: dvl:Dvul_1784 YbbR family protein YP_003156800.1 KEGG: dde:Dde_1517 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II YP_003156801.1 PFAM: Nucleotidyl transferase; KEGG: dvl:Dvul_1782 UTP-glucose-1-phosphate uridylyltransferase GalU YP_003156802.1 KEGG: dde:Dde_1519 replication restart DNA helicase PriA; TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein YP_003156803.1 TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dde:Dde_0099 asparaginyl-tRNA synthetase YP_003156804.1 PFAM: protein of unknown function DUF456; KEGG: dde:Dde_0973 hypothetical protein YP_003156805.1 PFAM: ribonuclease H; KEGG: amc:MADE_02389 ribonuclease HI YP_003156806.1 KEGG: dde:Dde_2946 HflK protein; TIGRFAM: HflK protein; PFAM: band 7 protein; SMART: band 7 protein YP_003156807.1 KEGG: dde:Dde_2947 HflC protein; TIGRFAM: HflC protein; PFAM: band 7 protein; SMART: band 7 protein YP_003156808.1 KEGG: dvu:DVU0487 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase YP_003156809.1 KEGG: dde:Dde_3458 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase YP_003156810.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; KEGG: lip:LI0628 DNA mismatch repair ATPase YP_003156811.1 PFAM: Organic solvent tolerance protein; OstA family protein; KEGG: dde:Dde_1413 organic solvent tolerance protein YP_003156812.1 KEGG: sfu:Sfum_1145 hypothetical protein YP_003156813.1 PFAM: nitrate reductase gamma subunit; KEGG: mta:Moth_1602 nitrate reductase, gamma subunit YP_003156814.1 KEGG: dol:Dole_0451 4Fe-4S ferredoxin, iron-sulfur binding YP_003156815.1 KEGG: dde:Dde_2273 cytochrome c family protein YP_003156816.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvu:DVU1287 reductase, iron-sulfur binding subunit YP_003156817.1 PFAM: Polysulphide reductase NrfD; KEGG: dol:Dole_0454 polysulphide reductase NrfD YP_003156818.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0113 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003156819.1 PFAM: protein of unknown function UPF0153; KEGG: dvl:Dvul_0114 hypothetical protein YP_003156820.1 KEGG: dde:Dde_3773 hypothetical protein YP_003156821.1 PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3772 TPR repeat-containing protein YP_003156822.1 KEGG: dol:Dole_2669 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region YP_003156823.1 KEGG: dvl:Dvul_2531 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein YP_003156824.1 PFAM: Dissimilatory sulfite reductase D; KEGG: dde:Dde_0528 dissimilatory sulfite reductase B YP_003156825.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; Cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_0529 hydrogenobyrinic acid a,c- diamide synthase (glutamine-hydrolysing) / cobyrinate a,c- diamide synthase YP_003156826.1 KEGG: dol:Dole_2099 hypothetical protein YP_003156827.1 KEGG: dps:DP2829 hypothetical protein YP_003156828.1 PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: dvl:Dvul_1288 chaperone DnaJ domain- containing protein YP_003156829.1 KEGG: dde:Dde_1660 DafA protein YP_003156830.1 KEGG: dvl:Dvul_1290 ATPase; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA YP_003156831.1 PFAM: Domain of unkown function DUF1786 pyruvate format-lyase activating enzyme; KEGG: dvl:Dvul_0572 hypothetical protein YP_003156832.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: dps:DP0310 nitroimidazole resistance protein YP_003156833.1 KEGG: ppd:Ppro_1104 hypothetical protein YP_003156834.1 PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; Resolvase RNase H domain protein fold; KEGG: dde:Dde_2316 RNA-binding domain-containing protein YP_003156835.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0530 hypothetical protein YP_003156836.1 PFAM: Ferritin Dps family protein; Rubrerythrin; KEGG: dvl:Dvul_1675 ferritin, Dps family protein YP_003156837.1 KEGG: dde:Dde_2617 hypothetical protein YP_003156838.1 PFAM: MltA domain protein; 3D domain protein; KEGG: dde:Dde_2733 transglycosylase YP_003156839.1 KEGG: dvu:DVU1886 hypothetical protein YP_003156840.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; GatB/Yqey domain protein; GatB central domain protein; KEGG: dvl:Dvul_1279 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_003156841.1 TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ctc:CTC00423 peptidase T YP_003156842.1 PFAM: TM2 domain containing protein; KEGG: pmy:Pmen_4145 TM2 domain-containing protein YP_003156843.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: slo:Shew_2578 extracellular solute-binding protein YP_003156844.1 PFAM: carbonic anhydrase; KEGG: dde:Dde_2979 carbonic anhydrase-like YP_003156845.1 KEGG: YALI0F07535p YP_003156846.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: dde:Dde_0773 hypothetical protein YP_003156847.1 KEGG: dol:Dole_1811 hypothetical protein YP_003156848.1 PFAM: PilT protein domain protein; KEGG: dol:Dole_1812 PilT domain-containing protein YP_003156849.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: mfa:Mfla_1161 thioredoxin YP_003156850.1 KEGG: dde:Dde_1006 enoyl-ACP reductase [NADH] YP_003156851.1 KEGG: dvl:Dvul_2179 phosphoribosylaminoimidazole- succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase YP_003156852.1 KEGG: dvu:DVU0796 histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: histidinol dehydrogenase YP_003156853.1 KEGG: dde:Dde_1011 hypothetical protein YP_003156854.1 KEGG: dvl:Dvul_0197 hypothetical protein YP_003156855.1 KEGG: lga:LGAS_0895 TPR repeat-containing protein YP_003156856.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dol:Dole_1357 response regulator receiver protein YP_003156857.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein YP_003156858.1 PFAM: protein of unknown function DUF81; KEGG: dol:Dole_1353 hypothetical protein YP_003156859.1 KEGG: dol:Dole_1354 hypothetical protein YP_003156860.1 KEGG: sfu:Sfum_2443 histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_003156861.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: sfu:Sfum_2442 two component, sigma54 specific, transcriptional regulator, fis family YP_003156862.1 PFAM: response regulator receiver; PBS lyase HEAT domain protein repeat-containing protein; SMART: response regulator receiver; KEGG: dps:DP2889 Che family two-component system response regulator YP_003156863.1 TIGRFAM: inosine guanosine and xanthosine phosphorylase family; PFAM: purine or other phosphorylase family 1; KEGG: dvu:DVU2230 purine nucleoside phosphorylase YP_003156864.1 PFAM: Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthase L chain ATP- binding; KEGG: dde:Dde_1541 pyruvate carboxylase YP_003156865.1 PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: dde:Dde_1542 acetyl-CoA carboxylase YP_003156866.1 KEGG: dvl:Dvul_1017 hypothetical protein YP_003156867.1 KEGG: dde:Dde_1544 hypothetical protein YP_003156868.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dvl:Dvul_1019 single-strand binding protein YP_003156870.1 PFAM: protein of unknown function DUF330; KEGG: dvl:Dvul_0256 hypothetical protein YP_003156871.1 PFAM: Mammalian cell entry related domain protein; KEGG: dvu:DVU3127 paraquat-inducible protein B YP_003156872.1 PFAM: Paraquat-inducible protein A; KEGG: dvl:Dvul_0258 paraquat-inducible protein A YP_003156873.1 PFAM: Paraquat-inducible protein A; KEGG: dvl:Dvul_0259 paraquat-inducible protein A YP_003156874.1 KEGG: pap:PSPA7_0483 hypothetical protein YP_003156875.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sfu:Sfum_1627 MscS mechanosensitive ion channel YP_003156876.1 PFAM: Glycosyltransferase 28 domain; KEGG: dps:DP1748 hypothetical protein YP_003156877.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cth:Cthe_1546 4Fe-4S ferredoxin, iron-sulfur binding YP_003156878.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: cli:Clim_1741 two component, sigma54 specific, transcriptional regulator, fis family YP_003156879.1 KEGG: nth:Nther_0250 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003156881.1 PFAM: cation transporter; KEGG: pca:Pcar_0086 TrkH family potassium uptake protein YP_003156882.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: pca:Pcar_0085 K+ transport systems, NAD- binding component YP_003156883.1 KEGG: cja:CJA_3099 6-phosphogluconate dehydrogenase, decarboxylating; TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding YP_003156884.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: ote:Oter_0309 pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_003156885.1 KEGG: hch:HCH_02210 amino acid ABC transporter periplasmic protein YP_003156886.1 KEGG: dde:Dde_0768 hypothetical protein YP_003156887.1 KEGG: dde:Dde_0769 hypothetical protein YP_003156888.1 KEGG: sfu:Sfum_3128 hypothetical protein YP_003156889.1 PFAM: Stage II sporulation E family protein; histidine kinase HAMP region domain protein; SMART: protein phosphatase 2C domain protein; KEGG: dde:Dde_0772 serine phosphatase YP_003156890.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_0720 anti-anti-sigma regulatory factor, SpoIIAA YP_003156891.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sus:Acid_1344 anti-sigma regulatory factor, serine/threonine protein kinase YP_003156892.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: sfu:Sfum_4031 ABC transporter related YP_003156893.1 PFAM: cyclic nucleotide-binding; KEGG: dde:Dde_0723 cyclic nucleotide-binding domain- containing protein YP_003156894.1 KEGG: dde:Dde_0728 hypothetical protein YP_003156895.1 KEGG: dps:DP1756 hypothetical protein YP_003156896.1 PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0730 hypothetical protein YP_003156897.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_0731 ATPase YP_003156898.1 PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0733 hypothetical protein YP_003156899.1 KEGG: dde:Dde_0735 hypothetical protein YP_003156900.1 PFAM: Phosphoglycerate mutase; KEGG: dde:Dde_0736 phosphoglycerate mutase (GpmB protein)-like YP_003156901.1 PFAM: glycosyl transferase group 1; KEGG: dps:DP0620 glycosyl transferase YP_003156902.1 PFAM: glycosyl transferase group 1; KEGG: dps:DP1749 glycosyltransferase YP_003156903.1 KEGG: dde:Dde_0739 hypothetical protein YP_003156904.1 KEGG: dvu:DVU1909 holo-ACP synthase; TIGRFAM: holo-ACP synthase; PFAM: 4'-phosphopantetheinyl transferase YP_003156905.1 PFAM: protein of unknown function DUF748; KEGG: dvu:DVU0961 hypothetical protein YP_003156907.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: cvi:CV_4028 N-acylneuraminate cytidylyltransferase YP_003156908.1 PFAM: Nucleotidyl transferase; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: pph:Ppha_0529 nucleotidyl transferase YP_003156909.1 KEGG: hch:HCH_04834 acetyltransferase YP_003156910.1 PFAM: N-acetylneuraminic acid synthase domain; KEGG: gur:Gura_4086 N-acetylneuraminate synthase YP_003156911.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: pap:PSPA7_1971 UDP-N-acetylglucosamine 2- epimerase YP_003156912.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: cvi:CV_4034 aminotransferase YP_003156913.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4- dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: pap:PSPA7_1970 NAD-dependent epimerase/dehydratase YP_003156914.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: gbm:Gbem_0343 exodeoxyribonuclease V, alpha subunit YP_003156915.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: gsu:GSU1534 exodeoxyribonuclease V, beta subunit YP_003156916.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: exodeoxyribonuclease V RecC subunit; KEGG: cli:Clim_1360 exodeoxyribonuclease V, gamma subunit YP_003156917.1 KEGG: dde:Dde_1591 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003156918.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1184 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003156919.1 KEGG: gbm:Gbem_1183 CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein)-like protein YP_003156920.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: ade:Adeh_1024 ArsR family transcriptional regulator YP_003156921.1 PFAM: Rhodanese domain protein; Rubrerythrin; SMART: Rhodanese domain protein; KEGG: dol:Dole_2261 rhodanese domain-containing protein YP_003156923.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; aminotransferase class IV; Ubiquitin interacting domain protein; KEGG: hau:Haur_2989 para-aminobenzoate synthase, subunit I YP_003156924.1 KEGG: dol:Dole_2885 DoxX family protein YP_003156925.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: dol:Dole_2883 rhodanese domain-containing protein YP_003156926.1 PFAM: Integrase catalytic region; KEGG: bpl:BURPS1106A_3886 transposase B YP_003156927.1 PFAM: transposase IS3/IS911 family protein; KEGG: dvu:DVU0556 ISDvu3, transposase OrfA YP_003156928.1 PFAM: protein of unknown function DUF1555; KEGG: mar:MAE_54420 parallel beta-helix repeat- containing protein YP_003156929.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; GAF domain protein; KEGG: rrs:RoseRS_0338 response regulator receiver modulated metal dependent phosphohydrolase YP_003156930.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: dde:Dde_0975 pseudouridylate synthase 23S RNA- specific-like YP_003156931.1 PFAM: protein of unknown function DUF1499; KEGG: cpb:Cphamn1_0470 protein of unknown function DUF1499 YP_003156932.1 KEGG: dde:Dde_0560 signal recognition particle- docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA YP_003156933.1 PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; KEGG: dde:Dde_1441 Smr protein/MutS2-like YP_003156934.1 KEGG: csa:Csal_2859 response regulator receiver modulated diguanylate cyclase YP_003156935.1 PFAM: Metal-dependent hydrolase HDOD; metal- dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: glo:Glov_1771 metal dependent phosphohydrolase YP_003156936.1 PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: sat:SYN_00166 metallo-beta-lactamase protein YP_003156937.1 TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase KEGG: dvl:Dvul_1600 methyltransferase YP_003156938.1 KEGG: dvl:Dvul_1599 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_003156939.1 KEGG: dvl:Dvul_1598 tRNA delta(2)- isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_003156940.1 KEGG: dde:Dde_2178 lipoprotein YP_003156941.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dde:Dde_2177 twin arginine-targeting protein translocase YP_003156942.1 KEGG: dvl:Dvul_1699 hypothetical protein YP_003156943.1 KEGG: dvu:DVU1370 hypothetical protein YP_003156944.1 PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sfu:Sfum_0869 transcriptional regulator, XRE family YP_003156945.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sfu:Sfum_0870 acyl-CoA synthetase YP_003156946.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dde:Dde_2173 HAD family hydrolase YP_003156947.1 PFAM: protein of unknown function YGGT; KEGG: dvu:DVU1372 hypothetical protein YP_003156948.1 PFAM: protein of unknown function DUF167; KEGG: dvu:DVU1374 hypothetical protein YP_003156949.1 KEGG: dvu:DVU1375 hypothetical protein YP_003156950.1 KEGG: dvl:Dvul_1692 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region YP_003156951.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_2167 acetolactate synthase 3 regulatory subunit YP_003156952.1 KEGG: dde:Dde_2166 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain protein; acetohydroxy acid isomeroreductase YP_003156953.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: glo:Glov_1971 phytochrome sensor protein YP_003156954.1 KEGG: dde:Dde_3015 hypothetical protein YP_003156955.1 PFAM: protein of unknown function DUF490; KEGG: rce:RC1_3925 hypothetical protein YP_003156956.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rru:Rru_A2099 surface antigen YP_003156957.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: ppd:Ppro_2012 deoxyribodipyrimidine photolyase YP_003156958.1 KEGG: sat:SYN_00810 cytoplasmic protein YP_003156959.1 PFAM: OmpA/MotB domain protein; KEGG: pph:Ppha_1908 OmpA/MotB domain protein YP_003156960.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sat:SYN_00173 response regulator receiver domain-containing protein YP_003156961.1 KEGG: mag:amb2930 sensor protein BarA; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; response regulator receiver; histidine kinase HAMP region domain protein YP_003156962.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bav:BAV1026 signaling/response regulator protein YP_003156963.1 PFAM: type II secretion system protein E; GAF domain protein; General secretory system II protein E domain protein; SMART: ATPase AAA; GAF domain protein; KEGG: pat:Patl_0467 GAF sensor protein YP_003156964.1 KEGG: eba:ebA1855 hypothetical protein YP_003156965.1 PFAM: heat shock protein Hsp20; KEGG: dps:DP1866 low molecular weight heat shock protein (HSP17) YP_003156966.1 KEGG: dde:Dde_3776 PDZ/DHR/GLGF; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003156967.1 KEGG: dvl:Dvul_2031 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_003156968.1 TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; KEGG: dps:DP2948 cystathionine beta-lyase YP_003156969.1 PFAM: NLP/P60 protein; KEGG: net:Neut_0870 NLP/P60 protein YP_003156970.1 PFAM: NLP/P60 protein; KEGG: hch:HCH_00420 cell wall-associated hydrolase (invasion-associated protein) YP_003156971.1 KEGG: psb:Psyr_3754 hypothetical protein YP_003156972.1 KEGG: dde:Dde_1564 DEAD/DEAH box helicase-like; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein YP_003156973.1 KEGG: dde:Dde_1569 metal dependent phosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003156974.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: cte:CT1896 peptidyl-prolyl cis-trans isomerase, FKBP-type YP_003156975.1 KEGG: dvu:DVU1980 hypothetical protein YP_003156976.1 KEGG: dvl:Dvul_2509 hypothetical protein YP_003156977.1 TIGRFAM: peptide chain release factor 3; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: pca:Pcar_0583 peptide chain release factor 3 YP_003156978.1 KEGG: dvl:Dvul_0996 hypothetical protein YP_003156979.1 KEGG: dvl:Dvul_1981 hypothetical protein YP_003156980.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dvl:Dvul_0416 hypothetical protein YP_003156981.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: dvl:Dvul_0415 GntR family transcriptional regulator YP_003156982.1 KEGG: noc:Noc_0544 hypothetical protein YP_003156983.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_0974 RNA methyltransferase YP_003156984.1 TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP- binding protein HSR1-related; KEGG: dvl:Dvul_1647 translation-associated GTPase YP_003156985.1 PFAM: aminotransferase class I and II; KEGG: ppd:Ppro_0958 aspartate aminotransferase YP_003156986.1 KEGG: dde:Dde_1687 hypothetical protein YP_003156987.1 PFAM: Methyltransferase type 11; KEGG: dol:Dole_1540 methyltransferase type 11 YP_003156988.1 KEGG: sat:SYN_01170 cytoplasmic protein YP_003156989.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: pth:PTH_0581 NifU-like protein YP_003156990.1 PFAM: Protein of unknown function CGGC region; KEGG: dol:Dole_0792 hypothetical protein YP_003156991.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: sfu:Sfum_2600 transposase IS116/IS110/IS902 family protein YP_003156992.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: dde:Dde_3339 hypothetical protein YP_003156993.1 PFAM: RelA/SpoT domain protein; KEGG: jan:Jann_3432 hypothetical protein YP_003156994.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: hch:HCH_04108 DMT superfamily permease YP_003156995.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ppd:Ppro_1860 nitroreductase YP_003156996.1 PFAM: NADPH-dependent FMN reductase; KEGG: dvu:DVU0819 FMN reductase, NADPH-dependent YP_003156997.1 PFAM: helix-turn-helix HxlR type; KEGG: sfu:Sfum_0892 transcriptional regulator, HxlR family YP_003156998.1 PFAM: plasmid stabilization system; KEGG: cpb:Cphamn1_1668 plasmid stabilization system YP_003156999.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: cpb:Cphamn1_1669 prevent-host-death family protein YP_003157000.1 PFAM: protein of unknown function DUF401; KEGG: dde:Dde_2515 hypothetical protein YP_003157001.1 PFAM: SEC-C motif domain protein; KEGG: ote:Oter_4216 SecC motif-containing protein YP_003157002.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_0204 hypothetical protein YP_003157003.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: mca:MCA0351 carboxymuconolactone decarboxylase domain-containing protein YP_003157004.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: sfu:Sfum_3904 endoribonuclease L-PSP YP_003157005.1 PFAM: conserved hypothetical protein; KEGG: pca:Pcar_0641 hypothetical protein YP_003157006.1 PFAM: protein of unknown function DUF330; KEGG: dol:Dole_1014 ABC-type transport system auxiliary component-like protein YP_003157007.1 PFAM: Mammalian cell entry related domain protein; KEGG: dol:Dole_1015 hypothetical protein YP_003157008.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: lbf:LBF_0734 ATP-binding protein of an ABC transporter complex YP_003157009.1 PFAM: protein of unknown function DUF140; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dol:Dole_1017 hypothetical protein YP_003157010.1 KEGG: dvl:Dvul_1359 hypothetical protein YP_003157011.1 KEGG: dsy:DSY4590 hypothetical protein YP_003157012.1 KEGG: sal:Sala_1695 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein YP_003157013.1 KEGG: dde:Dde_1579 hypothetical protein YP_003157014.1 TIGRFAM: tol-pal system protein YbgF; KEGG: dvl:Dvul_1158 TPR repeat-containing protein YP_003157015.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dde:Dde_1581 DNA processing protein DprA YP_003157016.1 KEGG: dde:Dde_1582 hypothetical protein YP_003157017.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: dde:Dde_1583 signal transduction protein YP_003157018.1 KEGG: dde:Dde_1584 response regulator receiver modulated diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein YP_003157019.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dde:Dde_1585 site-specific recombinase XerD- like YP_003157020.1 TIGRFAM: hypothetical protein; KEGG: rci:RRC2 redox-active protein YP_003157022.1 KEGG: dde:Dde_2148 chemotaxis protein CheZ YP_003157023.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_2147 hypothetical protein YP_003157024.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2146 iron-sulfur cluster-binding protein YP_003157025.1 TIGRFAM: tol-pal system protein YbgF; KEGG: dde:Dde_2145 TPR domain-containing protein YP_003157026.1 KEGG: dvu:DVU1929 hypothetical protein YP_003157027.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: dol:Dole_1189 prolipoprotein diacylglyceryl transferase YP_003157028.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: lip:LI1052 lipoprotein signal peptidase YP_003157029.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: dvu:DVU1927 isoleucyl-tRNA synthetase YP_003157030.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: gur:Gura_3171 UDP-glucose 4-epimerase YP_003157031.1 PFAM: Peptidase M16C associated domain protein; peptidase M16 domain protein; KEGG: sfu:Sfum_1661 peptidase M16C associated domain protein YP_003157032.1 PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: metal-dependent phosphohydrolase HD region; response regulator receiver; KEGG: dde:Dde_3114 metal dependent phosphohydrolase YP_003157033.1 PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: metal-dependent phosphohydrolase HD region; response regulator receiver; KEGG: dde:Dde_3114 metal dependent phosphohydrolase YP_003157034.1 PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_3114 metal dependent phosphohydrolase YP_003157035.1 KEGG: gvi:glr2033 hypothetical protein YP_003157036.1 KEGG: bcm:Bcenmc03_1622 hypothetical protein YP_003157037.1 KEGG: cph:Cpha266_0284 hypothetical protein YP_003157038.1 KEGG: sfu:Sfum_2870 UspA domain protein YP_003157041.1 KEGG: azo:azo2482 hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Diverse 7TM receptor extracellular region 2; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_003157042.1 KEGG: mag:amb4146 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Diverse 7TM receptor extracellular region 2; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_003157043.1 PFAM: glycosyl transferase group 1; KEGG: ter:Tery_1356 glycosyl transferase, group 1 YP_003157045.1 KEGG: dde:Dde_3058 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein YP_003157046.1 KEGG: dvl:Dvul_0482 selenocysteine synthase; TIGRFAM: L-seryl-tRNA selenium transferase; PFAM: L-seryl-tRNA selenium transferase; Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_003157047.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: dvu:DVU1029 histidinol-phosphate aminotransferase YP_003157048.1 KEGG: dde:Dde_1452 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_003157049.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: dvu:DVU1186 nucleoside triphosphate pyrophosphohydrolase YP_003157050.1 PFAM: Colicin V production protein; KEGG: dvl:Dvul_1872 colicin V production protein YP_003157051.1 KEGG: dvl:Dvul_1643 hypothetical protein YP_003157052.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvu:DVU1432 radical SAM domain-containing protein YP_003157053.1 KEGG: dde:Dde_0346 MucR family transcriptional regulator YP_003157054.1 KEGG: dde:Dde_0060 hypothetical protein YP_003157055.1 KEGG: dde:Dde_2611 lipoprotein YP_003157056.1 KEGG: dde:Dde_2610 hypothetical protein YP_003157057.1 PFAM: shikimate kinase; KEGG: dvl:Dvul_0723 shikimate kinase YP_003157058.1 PFAM: ABC transporter related; KEGG: dvl:Dvul_0566 ABC transporter related YP_003157059.1 PFAM: ABC transporter related; KEGG: dvl:Dvul_0565 ABC transporter related YP_003157060.1 PFAM: inner-membrane translocator; KEGG: dvu:DVU2742 high-affinity branched chain amino acid ABC transporter, permease protein YP_003157061.1 PFAM: inner-membrane translocator; KEGG: dvl:Dvul_0563 inner-membrane translocator YP_003157062.1 PFAM: extracellular ligand-binding receptor; KEGG: dvl:Dvul_0562 extracellular ligand-binding receptor YP_003157063.1 KEGG: dde:Dde_2619 phosphoheptose isomerase YP_003157064.1 TIGRFAM: regulatory protein, FmdB family; KEGG: dvl:Dvul_1274 FmdB family regulatory protein YP_003157065.1 KEGG: dvl:Dvul_1273 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase YP_003157066.1 KEGG: dvl:Dvul_0111 nicotinate-nucleotide-- dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM:nicotinate-nucleotide/dimethylbenzimidazolep hosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_003157067.1 PFAM: protein of unknown function DUF523; KEGG: dvl:Dvul_2924 hypothetical protein YP_003157068.1 PFAM: type IV pilus assembly PilZ; KEGG: sde:Sde_2582 TonB-like YP_003157070.1 KEGG: dvl:Dvul_1984 hypothetical protein YP_003157071.1 PFAM: phosphofructokinase; KEGG: dvl:Dvul_1167 diphosphate--fructose-6- phosphate 1-phosphotransferase YP_003157072.1 PFAM: domain of unknown function DUF1731; Male sterility domain; dTDP-4-dehydrorhamnose reductase; NAD- dependent epimerase/dehydratase; KEGG: dol:Dole_1467 NAD-dependent epimerase/dehydratase YP_003157073.1 PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cpc:Cpar_0242 nitrogen-fixing NifU domain protein YP_003157074.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cli:Clim_2175 aminotransferase class V YP_003157075.1 PFAM: Arginine-tRNA-protein transferase domain protein; KEGG: mxa:MXAN_2360 arginyl-tRNA-protein transferase YP_003157076.1 TIGRFAM: glutaminyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: pca:Pcar_0101 glutaminyl-tRNA synthetase YP_003157077.1 PFAM: NUDIX hydrolase; KEGG: rxy:Rxyl_0013 NUDIX hydrolase YP_003157078.1 PFAM: nitroreductase; KEGG: gur:Gura_2105 nitroreductase YP_003157079.1 PFAM: protein of unknown function DUF606; KEGG: bcz:pE33L466_0268 hypothetical protein YP_003157080.1 KEGG: sat:SYN_00675 cytoplasmic protein YP_003157081.1 PFAM: protein of unknown function DUF84; KEGG: mth:MTH1897 NTPase YP_003157083.1 KEGG: gbm:Gbem_2238 hypothetical protein YP_003157084.1 KEGG: dde:Dde_1759 hypothetical protein YP_003157085.1 PFAM: excalibur domain protein; Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: eba:ebA2865 cold shock family protein YP_003157086.1 PFAM: Glucokinase; KEGG: dde:Dde_1461 glucokinase YP_003157087.1 KEGG: cch:Cag_1112 hypothetical protein YP_003157088.1 KEGG: mac:MA2288 hypothetical protein YP_003157089.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gur:Gura_1358 helix-turn-helix domain- containing protein YP_003157090.1 PFAM: protein of unknown function DUF891; KEGG: net:Neut_1480 hypothetical protein YP_003157091.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0265 iron-sulfur cluster-binding protein YP_003157092.1 PFAM: protein of unknown function DUF81; KEGG: gur:Gura_3512 hypothetical protein YP_003157093.1 KEGG: dde:Dde_0628 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease YP_003157094.1 PFAM: protein of unknown function DUF294 nucleotidyltransferase ; CBS domain containing protein; cyclic nucleotide-binding; SMART: CBS domain containing protein; KEGG: dde:Dde_0629 cyclic nucleotide-binding domain- containing protein YP_003157095.1 PFAM: Na+/solute symporter; KEGG: dde:Dde_0630 sodium:solute symporter family protein YP_003157096.1 KEGG: cts:Ctha_1887 hypothetical protein YP_003157097.1 PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: ote:Oter_0268 appr-1-p processing domain- containing protein YP_003157098.1 KEGG: afl:Aflv_2607 protein UshA precursor (two S- layer domains; UDP-sugar hydrolase; 5'-nucleotidase) YP_003157099.1 KEGG: dvl:Dvul_1588 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein YP_003157100.1 PFAM: phosphatidylglycerophosphatase A; KEGG: dvu:DVU0528 phosphatidylglycerophosphatase YP_003157101.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sfu:Sfum_3627 maf protein YP_003157102.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; glucose-inhibited division protein A; FAD dependent oxidoreductase; HI0933 family protein; KEGG: dvl:Dvul_1653 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003157103.1 KEGG: sfu:Sfum_1264 hypothetical protein YP_003157104.1 KEGG: dol:Dole_0304 hypothetical protein YP_003157105.1 KEGG: dde:Dde_3708 hypothetical protein YP_003157106.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dvl:Dvul_2714 hypothetical protein YP_003157107.1 PFAM: cytochrome c class III; KEGG: dde:Dde_3710 acidic cytochrome c3 YP_003157108.1 PFAM: cytochrome c class III; KEGG: dde:Dde_0653 high-molecular-weight cytochrome c YP_003157109.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0652 hypothetical protein YP_003157110.1 PFAM: Polysulphide reductase NrfD; KEGG: dvl:Dvul_2407 polysulphide reductase, NrfD YP_003157111.1 KEGG: dde:Dde_0650 hmc operon protein 4 YP_003157112.1 KEGG: dol:Dole_2254 hmc operon protein 5 YP_003157113.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dvl:Dvul_2410 hypothetical protein YP_003157114.1 PFAM: UspA domain protein; KEGG: dol:Dole_2256 UspA domain-containing protein YP_003157115.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dol:Dole_2257 response regulator receiver protein YP_003157116.1 PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; KEGG: dol:Dole_2258 multi-sensor signal transduction histidine kinase YP_003157117.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dol:Dole_2259 BadM/Rrf2 family transcriptional regulator YP_003157118.1 PFAM: nitroreductase; KEGG: ppd:Ppro_0326 nitroreductase YP_003157119.1 KEGG: dde:Dde_2844 queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA- guanine transglycosylase, various specificities; PFAM: Queuine/other tRNA-ribosyltransferase YP_003157120.1 KEGG: dvl:Dvul_1999 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; iron-sulfur cluster loop YP_003157121.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: dde:Dde_1490 periplasmic divalent cation tolerance protein CutA YP_003157122.1 KEGG: dvu:DVU0984 tRNA-i(6)A37 modification enzyme MiaB; TIGRFAM: RNA modification enzyme, MiaB family; tRNA- i(6)A37 thiotransferase enzyme MiaB; PFAM: Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_003157123.1 PFAM: protein of unknown function DUF151; KEGG: dvl:Dvul_2005 hypothetical protein YP_003157124.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dvl:Dvul_2006 hypothetical protein YP_003157125.1 PFAM: MotA/TolQ/exbB proton channel; KEGG: dde:Dde_3629 TolQ protein YP_003157126.1 PFAM: Biopolymer transport protein exbD/TolR; KEGG: dvl:Dvul_0281 biopolymer transport protein exbD/TolR YP_003157127.1 TIGRFAM: TonB family protein; KEGG: dvl:Dvul_0280 TonB domain-containing protein YP_003157128.1 PFAM: WD40 domain protein beta Propeller; KEGG: dvl:Dvul_0278 WD40 domain-containing protein YP_003157129.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: dvl:Dvul_0277 OmpA/MotB domain-containing protein YP_003157131.1 KEGG: spe:Spro_1871 glucosyltransferase MdoH YP_003157133.1 PFAM: periplasmic glucan biosynthesis protein MdoG; KEGG: tbd:Tbd_1311 glucan biosynthesis protein G YP_003157134.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: GAF domain protein; ATPase AAA; KEGG: dvl:Dvul_2966 transcriptional regulator NifA YP_003157135.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: sat:SYN_02541 ribonuclease BN family membrane protein YP_003157136.1 TIGRFAM: hybrid cluster protein; PFAM: Prismane; KEGG: sat:SYN_02614 hydroxylamine reductase YP_003157137.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvl:Dvul_1521 glutamate synthase subunit beta YP_003157138.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2085 iron-sulfur cluster-binding protein YP_003157139.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1052 iron-sulfur cluster-binding protein YP_003157140.1 PFAM: GTPase EngC; KEGG: pph:Ppha_1108 GTPase EngC YP_003157141.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cdf:CD0673 hypothetical protein YP_003157142.1 KEGG: cpy:Cphy_1462 hypothetical protein YP_003157144.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cpf:CPF_0881 hypothetical protein YP_003157146.1 TIGRFAM: addiction module antidote protein; KEGG: dvl:Dvul_1443 transcriptional regulator YP_003157147.1 TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: pvi:Cvib_0664 hypothetical protein YP_003157148.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: aci:ACIAD2967 membrane protease subunit YP_003157149.1 PFAM: protein of unknown function DUF107; KEGG: abm:ABSDF0717 hypothetical protein YP_003157150.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: dsh:Dshi_1249 IclR family transcriptional regulator YP_003157151.1 PFAM: extracellular ligand-binding receptor; KEGG: lip:LI0496 branched chain amino acid ABC transporter, periplasmic amino acid-binding protein YP_003157152.1 PFAM: inner-membrane translocator; KEGG: lip:LI0497 branched chain amino acid ABC transporter, permease protein YP_003157153.1 PFAM: inner-membrane translocator; KEGG: lip:LI0498 branched chain amino acid ABC transporter, permease protein YP_003157154.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: lip:LI0499 branched chain amino acid ABC transporter, ATP-binding protein YP_003157155.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: tpt:Tpet_1606 ABC transporter related YP_003157156.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: dol:Dole_0316 ferredoxin--NADP(+) reductase subunit alpha YP_003157157.1 TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dol:Dole_0317 glutamate synthase (NADPH), homotetrameric YP_003157158.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: shm:Shewmr7_1428 TRAP dicarboxylate transporter, DctP subunit YP_003157159.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: hch:HCH_06606 TRAP-type C4-dicarboxylate transport system, small permease component YP_003157160.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppr:PBPRB1887 C4-dicarboxylate transport protein YP_003157161.1 KEGG: sfu:Sfum_0025 ferric uptake regulator, Fur family YP_003157162.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_2209 ATPase YP_003157163.1 PFAM: periplasmic solute binding protein; KEGG: dde:Dde_2208 cation ABC transporter, periplasmc-binding protein YP_003157164.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_0500 ferredoxin-nitroreductase protein YP_003157165.1 PFAM: homocysteine S-methyltransferase; methylenetetrahydrofolate reductase; KEGG: pca:Pcar_0238 bifunctional homocysteine S- methyltransferase/5,10-methylenetetrahydrofolate reductase protein YP_003157166.1 PFAM: SH3 type 3 domain protein; KEGG: azo:azo2926 conserved hypothetical secreted protein YP_003157167.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: dvu:DVU3381 transcriptional regulatory protein ZraR YP_003157168.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gsu:GSU2492 sensory box histidine kinase YP_003157169.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dps:DP3102 ABC transporter, ATP-binding protein YP_003157170.1 PFAM: inner-membrane translocator; KEGG: dps:DP3101 hypothetical protein YP_003157171.1 PFAM: CHASE2 domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dar:Daro_1897 metal-dependent phosphohydrolase YP_003157172.1 PFAM: OmpA/MotB domain protein; KEGG: dar:Daro_1898 OmpA/MotB YP_003157173.1 KEGG: dar:Daro_1899 hypothetical protein YP_003157174.1 KEGG: dde:Dde_2446 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP- dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; HRDC domain protein; SMART: helicase domain protein; HRDC domain protein; DEAD-like helicases YP_003157175.1 PFAM: Polynucleotide adenylyltransferase region; KEGG: dvl:Dvul_1326 polynucleotide adenylyltransferase region YP_003157176.1 KEGG: sus:Acid_6412 serine/threonine protein kinase YP_003157178.1 KEGG: pae:PA5472 hypothetical protein YP_003157179.1 KEGG: eta:ETA_06660 deoxyribose-phosphate aldolase 2; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase YP_003157180.1 KEGG: rle:RL0207 phosphopentomutase; TIGRFAM: phosphopentomutase; PFAM: Phosphopentomutase domain protein; metalloenzyme domain protein YP_003157181.1 PFAM: protein of unknown function UPF0118; KEGG: hypothetical protein, conserved YP_003157182.1 KEGG: kpe:KPK_3077 response regulator YP_003157183.1 KEGG: sfu:Sfum_3068 hypothetical protein YP_003157184.1 KEGG: sfu:Sfum_3069 hypothetical protein YP_003157185.1 PFAM: phosphoribosyltransferase; KEGG: dde:Dde_2016 pyrimidine regulatory protein PyrR YP_003157186.1 KEGG: dvl:Dvul_1296 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_003157187.1 KEGG: dde:Dde_1798 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase YP_003157188.1 KEGG: dvl:Dvul_1298 hypothetical protein YP_003157190.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dvl:Dvul_1300 flagellar synthesis regulator FleN YP_003157191.1 KEGG: dvl:Dvul_1301 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003157192.1 KEGG: rsr-1; SR protein related YP_003157193.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dvl:Dvul_1303 apolipoprotein N- acyltransferase YP_003157194.1 PFAM: CBS domain containing protein; transporter- associated region; SMART: CBS domain containing protein; KEGG: dde:Dde_1807 CBS YP_003157195.1 KEGG: dde:Dde_1808 hypothetical protein YP_003157196.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: chy:CHY_1357 oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase YP_003157197.1 KEGG: vpa:VPA0009 two-component sensor; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein YP_003157198.1 KEGG: dol:Dole_1449 hypothetical protein YP_003157199.1 KEGG: dol:Dole_1450 GTP-binding protein HSR1- related YP_003157200.1 PFAM: protein of unknown function DUF558; KEGG: dde:Dde_1997 hypothetical protein YP_003157201.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: dde:Dde_1996 glycine cleavage system T protein YP_003157202.1 KEGG: dde:Dde_1995 hypothetical protein YP_003157203.1 KEGG: dde:Dde_1994 hypothetical protein YP_003157204.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: dde:Dde_1993 rod shape-determining protein MreB YP_003157205.1 PFAM: NUDIX hydrolase; KEGG: dvl:Dvul_1408 NUDIX hydrolase YP_003157206.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: dvl:Dvul_1409 ribosomal-protein-alanine acetyltransferase YP_003157207.1 PFAM: O-methyltransferase family 3; Methyltransferase type 11; KEGG: drm:Dred_1444 O-methyltransferase family protein YP_003157208.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: aeh:Mlg_0922 peptidylprolyl isomerase YP_003157209.1 KEGG: dde:Dde_1531 hypothetical protein YP_003157210.1 KEGG: dvl:Dvul_1611 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003157211.1 KEGG: dde:Dde_2125 4-diphosphocytidyl-2-C-methyl-D- erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase YP_003157212.1 KEGG: dvl:Dvul_1558 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_003157213.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: dvu:DVU1574 50S ribosomal protein L25/general stress protein Ctc YP_003157214.1 KEGG: dde:Dde_2128 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase YP_003157215.1 PFAM: transcription factor CarD; KEGG: dvl:Dvul_1561 CarD family transcriptional regulator YP_003157216.1 KEGG: dvu:DVU1571 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Ribonuclease B OB region domain; Rho termination factor domain protein; Rho termination factor RNA-binding; SMART: Cold shock protein; ATPase AAA YP_003157217.1 TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; KEGG: rsq:Rsph17025_3059 NAD+ synthetase YP_003157218.1 PFAM: peptidase M48 Ste24p; KEGG: dvu:DVU1578 TPR domain-containing protein YP_003157219.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: dde:Dde_1817 protein translocase subunit YajC YP_003157220.1 TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: dde:Dde_1818 preprotein translocase subunit SecD YP_003157221.1 TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: dde:Dde_1819 preprotein translocase subunit SecF YP_003157222.1 PFAM: protein of unknown function DUF81; KEGG: dvl:Dvul_2726 hypothetical protein YP_003157223.1 KEGG: dde:Dde_0600 hypothetical protein YP_003157224.1 KEGG: dde:Dde_0604 pyruvate,water dikinase YP_003157225.1 KEGG: dde:Dde_1829 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase YP_003157226.1 TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; KEGG: dvl:Dvul_1352 quinolinate synthetase YP_003157227.1 KEGG: dvl:Dvul_1353 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_003157228.1 KEGG: dde:Dde_2351 hypothetical protein YP_003157229.1 PFAM: glycosyl transferase family 9; KEGG: dde:Dde_0565 heptosyltransferase family protein YP_003157230.1 KEGG: dde:Dde_0564 hypothetical protein YP_003157231.1 KEGG: dde:Dde_0563 hypothetical protein YP_003157232.1 PFAM: protein of unknown function DUF152; KEGG: dvl:Dvul_2619 hypothetical protein YP_003157233.1 TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: dvl:Dvul_2618 5-formyltetrahydrofolate cyclo- ligase YP_003157234.1 PFAM: metallophosphoesterase; KEGG: dde:Dde_3615 phosphoesterase, Icc protein- like YP_003157235.1 KEGG: dde:Dde_0551 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase YP_003157236.1 PFAM: regulatory protein TetR; KEGG: dvl:Dvul_1398 TetR family transcriptional regulator YP_003157237.1 PFAM: DsrE family protein; KEGG: sfu:Sfum_3594 hypothetical protein YP_003157238.1 PFAM: protein of unknown function UPF0027; KEGG: pca:Pcar_2835 hypothetical protein YP_003157239.1 TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: msm:MSMEG_6257 asparate kinase, monofunctional class YP_003157240.1 PFAM: UspA domain protein; KEGG: sfu:Sfum_2870 UspA domain protein YP_003157241.1 PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: bvu:BVU_3899 hypothetical protein YP_003157242.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: dde:Dde_0543 integral membrane protein MviN YP_003157243.1 PFAM: aminotransferase class I and II; KEGG: ote:Oter_4620 aminotransferase class I and II YP_003157244.1 PFAM: methyltransferase small; KEGG: dde:Dde_3501 hypothetical protein YP_003157246.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dde:Dde_0765 CBS YP_003157247.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dol:Dole_1906 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003157248.1 PFAM: protein of unknown function DUF111; KEGG: dde:Dde_0766 hypothetical protein YP_003157249.1 PFAM: protein of unknown function DUF188; KEGG: eca:ECA0873 hypothetical protein YP_003157250.1 PFAM: peptidase U32; KEGG: dvl:Dvul_2306 peptidase U32 YP_003157251.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dvl:Dvul_2305 phosphotransferase domain- containing protein YP_003157252.1 KEGG: dvl:Dvul_2949 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein YP_003157253.1 KEGG: dvl:Dvul_3022 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003157254.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvl:Dvul_3023 response regulator receiver protein YP_003157255.1 PFAM: protein of unknown function UPF0061; KEGG: pca:Pcar_0297 hypothetical protein YP_003157256.1 KEGG: dvl:Dvul_2679 chemotaxis protein Chex YP_003157257.1 KEGG: dvl:Dvul_0638 hypothetical protein YP_003157258.1 PFAM: peptidase C39 bacteriocin processing; KEGG: sat:SYN_03849 hypothetical protein YP_003157259.1 PFAM: Tetratricopeptide TPR_2 repeat protein; Tetratricopeptide TPR_4; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sat:SYN_01301 TPR repeat-containing protein YP_003157260.1 KEGG: gur:Gura_3577 hypothetical protein YP_003157261.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: tye:THEYE_A1709 methyl-accepting chemotaxis protein YP_003157262.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dps:DP0979 methyl-accepting chemotaxis protein YP_003157264.1 PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: pca:Pcar_0499 hypothetical protein YP_003157265.1 PFAM: HipA domain protein; KEGG: dac:Daci_0903 hypothetical protein YP_003157266.1 KEGG: btr:Btr_0949 hypothetical protein YP_003157267.1 PFAM: protein of unknown function DUF497; KEGG: rpe:RPE_1776 protein of unknown function DUF497 YP_003157268.1 PFAM: Integrase catalytic region; KEGG: bpl:BURPS1106A_3886 transposase B YP_003157269.1 PFAM: transposase IS3/IS911 family protein; KEGG: lpc:LPC_2155 transposase, IS911 YP_003157270.1 KEGG: pna:Pnap_4550 hypothetical protein YP_003157271.1 PFAM: blue (type 1) copper domain protein; KEGG: eba:ebA1878 multicopper oxidase YP_003157272.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: lch:Lcho_1266 multicopper oxidase type 3 YP_003157273.1 KEGG: ajs:Ajs_2670 copper resistance- related lipoprotein YP_003157274.1 KEGG: hypothetical protein YP_003157275.1 KEGG: pmy:Pmen_2240 hypothetical protein YP_003157276.1 KEGG: pmy:Pmen_2239 hypothetical protein YP_003157277.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: cti:RALTA_A0750 iron(III)-transport system ATP-binding protein YP_003157278.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tbd:Tbd_0989 iron transport system permease protein YP_003157279.1 PFAM: extracellular solute-binding protein family 1; KEGG: dps:DP1396 iron(III) ABC transporter, periplasmic binding protein [precursor] YP_003157280.1 KEGG: dvl:Dvul_1570 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-3 domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein YP_003157281.1 PFAM: extracellular ligand-binding receptor; KEGG: dvl:Dvul_2232 extracellular ligand-binding receptor YP_003157282.1 KEGG: dps:DPPB43 related to TraI protein (partial length) YP_003157283.1 KEGG: mcp:MCAP_0303 hypothetical protein YP_003157285.1 KEGG: she:Shewmr4_2213 hypothetical protein YP_003157286.1 KEGG: swi:Swit_5222 hypothetical protein YP_003157287.1 PFAM: NERD domain protein; KEGG: sat:SYN_02043 hypothetical protein YP_003157288.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: ppf:Pput_0676 filamentation induced by cAMP protein Fic YP_003157289.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3006 response regulator receiver domain-containing protein YP_003157290.1 TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: tcx:Tcr_2017 phosphoglucomutase YP_003157291.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: dvl:Dvul_0929 hydrogenase accessory protein HypB YP_003157292.1 PFAM: hydrogenase expression/synthesis HypA; KEGG: dde:Dde_1308 hydrogenase nickel insertion protein HypA YP_003157293.1 KEGG: dvl:Dvul_2213 hypothetical protein YP_003157294.1 PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: sat:SYN_01418 LysM domain-containing protein YP_003157295.1 PFAM: CBS domain containing protein; amino acid- binding ACT domain protein; SMART: CBS domain containing protein; KEGG: dau:Daud_2208 CBS domain-containing protein YP_003157296.1 PFAM: protein of unknown function DUF1255; KEGG: lbf:LBF_5007 hypothetical protein YP_003157297.1 PFAM: Peptidase M23; KEGG: gur:Gura_0954 peptidase M23B YP_003157298.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: rxy:Rxyl_1119 ADP-ribosylation/crystallin J1 YP_003157299.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dvl:Dvul_1243 hydrogenase assembly chaperone HypC/HupF YP_003157300.1 TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dde:Dde_2139 hydrogenase expression/formation protein YP_003157301.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2138 periplasmic (NiFe) hydrogenase, large subunit, isozyme 1 YP_003157302.1 KEGG: dde:Dde_2137 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003157303.1 PFAM: nitroreductase; KEGG: btk:BT9727_3121 NAD(P)H-flavin oxidoreductase YP_003157304.1 PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dvl:Dvul_2082 TPR repeat-containing protein YP_003157305.1 PFAM: major facilitator superfamily MFS_1; KEGG: mgm:Mmc1_2537 major facilitator superfamily MFS_1 YP_003157306.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hma:rrnAC0745 acetyltransferase YP_003157307.1 KEGG: neu:NE1277 hypothetical protein YP_003157308.1 KEGG: pth:PTH_0643 thiamine monophosphate synthase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_003157309.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dvl:Dvul_1138 thiamine biosynthesis protein ThiF YP_003157310.1 TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; KEGG: dde:Dde_1556 thiamine biosynthesis protein ThiH YP_003157311.1 PFAM: thiazole biosynthesis family protein; KEGG: dde:Dde_1555 thiazole synthase YP_003157312.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: dde:Dde_1554 thiamine biosynthesis protein ThiS YP_003157313.1 PFAM: histone deacetylase superfamily; KEGG: dvl:Dvul_1093 histone deacetylase superfamily protein YP_003157314.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dvl:Dvul_1002 hydantoinase/oxoprolinase YP_003157315.1 PFAM: inositol monophosphatase; KEGG: dvl:Dvul_1407 inositol monophosphatase YP_003157317.1 KEGG: dde:Dde_1427 hypothetical protein YP_003157318.1 PFAM: protein of unknown function DUF178; KEGG: gsu:GSU2017 hypothetical protein YP_003157319.1 PFAM: adenylate kinase; KEGG: dvu:DVU1932 adenylate kinase YP_003157320.1 KEGG: dvu:DVU1034 hypothetical protein YP_003157321.1 KEGG: tye:THEYE_A0985 dissimilatory siroheme- sulfite reductase, gamma subunit-like protein YP_003157322.1 PFAM: Radical SAM domain protein; KEGG: dol:Dole_0890 radical SAM domain-containing protein YP_003157324.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0309 ABC transporter, permease protein YP_003157325.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0308 ABC transporter, permease protein YP_003157326.1 KEGG: dde:Dde_0759 hypothetical protein YP_003157327.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: dde:Dde_0213 ATPase YP_003157328.1 TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dol:Dole_2262 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003157329.1 PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; KEGG: rce:RC1_2237 peroxisomal NADH pyrophosphatase YP_003157330.1 PFAM: Radical SAM domain protein; KEGG: cbl:CLK_0512 radical SAM domain-containing protein YP_003157331.1 PFAM: amino acid-binding ACT domain protein; KEGG: dvl:Dvul_1522 amino acid-binding ACT domain- containing protein YP_003157332.1 KEGG: dvu:DVU1615 phenylacetate-coenzyme A ligase YP_003157333.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: dvl:Dvul_1517 iojap-like protein YP_003157334.1 KEGG: gur:Gura_4127 phosphoglyceromutase; TIGRFAM: phosphoglycerate mutase, 2,3- bisphosphoglycerate-independent; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein YP_003157335.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: mca:MCA0577 hypothetical protein YP_003157336.1 KEGG: similar to CD2-associated protein YP_003157337.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: dde:Dde_0793 RNA-binding region RNP-1 YP_003157338.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cvi:CV_3339 hypothetical protein YP_003157339.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: dde:Dde_0186 extracellular solute-binding protein YP_003157340.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0185 amino acid ABC transporter permease YP_003157341.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_0184 ATPase YP_003157342.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0183 amino acid ABC transporter permease YP_003157343.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: gsu:GSU1644 ABC transporter ATP- binding protein YP_003157344.1 KEGG: noc:Noc_1081 S-isoprenylcysteine methyltransferase-like protein YP_003157345.1 KEGG: sbn:Sbal195_1425 methyl-accepting chemotaxis sensory transducer YP_003157346.1 KEGG: dde:Dde_3327 GntR family transcriptional regulator; TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003157347.1 TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG; KEGG: dde:Dde_3328 alkylphosphonate utilization protein PhnG YP_003157348.1 TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; KEGG: mrd:Mrad2831_3856 phosphonate C-P lyase system protein PhnH YP_003157349.1 PFAM: phosphonate metabolism; KEGG: rpc:RPC_1284 phosphonate metabolism YP_003157350.1 PFAM: phosphonate metabolism PhnJ; KEGG: rpb:RPB_4092 phosphonate metabolism PhnJ YP_003157351.1 KEGG: ret:RHE_CH00163 phosphonates transport ATP- binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; SMART: ATPase AAA YP_003157352.1 KEGG: mlo:mlr9286 PhnL, phosphonates transport ATP- binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: ATPase AAA YP_003157353.1 TIGRFAM: phosphonate metabolism protein PhnM; PFAM: Amidohydrolase 3; amidohydrolase; KEGG: dde:Dde_3334 amidohydrolase-like YP_003157354.1 TIGRFAM: phosphonate metabolism protein/1,5- bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: mpt:Mpe_B0648 phosphonate metabolism protein YP_003157355.1 TIGRFAM: phosphonate metabolim protein, transferase hexapeptide repeat family; KEGG: azc:AZC_0705 acetyltransferase YP_003157356.1 KEGG: syp:SYNPCC7002_A0027 hypothetical protein YP_003157357.1 PFAM: plasmid stabilization system; KEGG: deb:DehaBAV1_1039 addiction module antitoxin YP_003157358.1 KEGG: amr:AM1_2255 hypothetical protein YP_003157359.1 PFAM: protein of unknown function DUF1045; KEGG: rce:RC1_0524 hypothetical protein YP_003157360.1 TIGRFAM: phosphonate metabolism protein PhnM; PFAM: Amidohydrolase 3; amidohydrolase; KEGG: dde:Dde_3334 amidohydrolase-like YP_003157361.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_2888 phosphonate ABC transporter, inner membrane subunit YP_003157362.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate binding protein; phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: rfr:Rfer_0184 phosphonate-binding periplasmic protein YP_003157363.1 KEGG: pau:PA14_20300 ATP-binding component of ABC phosphonate transporter; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: ATPase AAA YP_003157364.1 SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3006 response regulator receiver domain-containing protein YP_003157365.1 KEGG: dvl:Dvul_1570 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold- 3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; ATP-binding region ATPase domain protein YP_003157367.1 PFAM: pyruvate carboxyltransferase; KEGG: dvu:DVUA0016 homocitrate synthase YP_003157368.1 KEGG: dvl:Dvul_3090 nitrogenase reductase; TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein YP_003157369.1 PFAM: nitrogen regulatory protein P-II; KEGG: sfu:Sfum_1018 nitrogen regulatory protein P- II YP_003157370.1 PFAM: nitrogen regulatory protein P-II; KEGG: sfu:Sfum_1017 nitrogen regulatory protein P- II YP_003157371.1 KEGG: paa:Paes_1630 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1 YP_003157372.1 KEGG: sfu:Sfum_1015 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1 YP_003157373.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: cli:Clim_0678 nitrogenase cofactor biosynthesis protein NifB YP_003157374.1 KEGG: dvl:Dvul_3095 ferredoxin, 2fe-2s YP_003157375.1 KEGG: sfu:Sfum_1013 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1 YP_003157376.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: dvu:DVUA0008 nitrogenase molybdenum-iron cofactor biosynthesis protein NifN YP_003157377.1 KEGG: dvl:Dvul_3098 radical SAM domain-containing protein; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM domain protein; Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SMART: Elongator protein 3/MiaB/NifB YP_003157378.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: sfu:Sfum_4061 peptidase S11, D-alanyl-D- alanine carboxypeptidase 1 YP_003157379.1 PFAM: type IV pilus assembly PilZ YP_003157380.1 PFAM: type IV pilus assembly PilZ YP_003157381.1 TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: tex:Teth514_0233 lipoyltransferase and lipoate-protein ligase YP_003157382.1 KEGG: dde:Dde_1207 heterodisulfide reductase, C subunit YP_003157383.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dde:Dde_1208 succinate dehydrogenase subunit C YP_003157384.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1209 heterodisulfide reductase, A subunit YP_003157385.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_3527 hydrogenase, iron-sulfur cluster- binding subunit YP_003157386.1 PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1211 hydrogenase, iron-sulfur cluster- binding subunit YP_003157387.1 KEGG: dde:Dde_1212 hydrogenase YP_003157388.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_1213 hydrogenase YP_003157389.1 PFAM: Rubrerythrin; KEGG: dde:Dde_1214 hypothetical protein YP_003157390.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dde:Dde_3730 phosphonate-binding periplasmic protein YP_003157391.1 KEGG: dvl:Dvul_1231 phosphonate ABC transporter, ATPase subunit; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: ATPase AAA YP_003157392.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_1232 phosphonate ABC transporter, inner membrane subunit YP_003157393.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_1233 phosphonate ABC transporter, inner membrane subunit YP_003157394.1 PFAM: NERD domain protein; KEGG: predicted protein YP_003157395.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: maq:Maqu_0092 YbaK/EbsC protein YP_003157396.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: dde:Dde_1050 3,4-dihydroxy-2-butanone 4- phosphate synthase YP_003157397.1 KEGG: gsu:GSU3358 hypothetical protein YP_003157398.1 TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: dde:Dde_1533 GTP-binding protein TypA YP_003157399.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; KEGG: dps:DP0272 hypothetical protein YP_003157400.1 KEGG: cyt:cce_1877 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver YP_003157401.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dol:Dole_2687 anti-sigma-factor antagonist YP_003157402.1 PFAM: response regulator receiver; Hpt domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; ATP-binding region ATPase domain protein; CheW domain protein; KEGG: dol:Dole_0990 CheA signal transduction histidine kinase YP_003157403.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: dps:DP2643 purine-binding chemotaxis protein CheW YP_003157404.1 KEGG: dps:DP2644 Che family two-component system response regulator; PFAM: chemotaxis protein CheB; response regulator receiver; SMART: response regulator receiver YP_003157405.1 KEGG: dps:DP2645 chemotaxis protein methyltransferase CheR; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_003157406.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: dvl:Dvul_1327 biotin--acetyl-CoA-carboxylase ligase YP_003157407.1 PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; pyruvate carboxyltransferase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: dvl:Dvul_1328 pyruvate carboxylase YP_003157408.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; PEP- utilizing protein; KEGG: dvl:Dvul_1329 PEP-utilising enzyme, mobile region YP_003157409.1 PFAM: protein of unknown function DUF45; KEGG: cli:Clim_1657 protein of unknown function DUF45 YP_003157410.1 KEGG: lch:Lcho_1906 hypothetical protein YP_003157411.1 KEGG: rxy:Rxyl_0180 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003157412.1 PFAM: GCN5-related N-acetyltransferase; KEGG: psb:Psyr_4207 GCN5-related N- acetyltransferase YP_003157413.1 PFAM: phosphoglycerate kinase; KEGG: dps:DP0101 phosphoglycerate kinase YP_003157414.1 KEGG: dvl:Dvul_1410 triose-phosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase YP_003157415.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: dvl:Dvul_1411 preprotein translocase subunit SecG YP_003157416.1 KEGG: dde:Dde_1730 hypothetical protein YP_003157417.1 KEGG: lbf:LBF_4002 hypothetical protein YP_003157418.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: dar:Daro_1312 resolvase, N-terminal:resolvase helix-turn-helix region YP_003157420.1 KEGG: ent:Ent638_0786 hypothetical protein YP_003157421.1 PFAM: integrase family protein; KEGG: rru:Rru_A3316 phage integrase YP_003157422.1 KEGG: har:HEAR3040 hypothetical protein YP_003157423.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: dvu:DVU2843 DNA mismatch endonuclease Vsr YP_003157424.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: cch:Cag_1628 C-5 cytosine-specific DNA methylase YP_003157425.1 KEGG: cph:Cpha266_2523 type II site-specific deoxyribonuclease YP_003157426.1 PFAM: Resolvase domain; KEGG: met:M446_1223 resolvase domain-containing protein YP_003157429.1 TIGRFAM: phage regulatory protein, Rha family; KEGG: sgl:SG0739 hypothetical protein YP_003157430.1 PFAM: BRO domain protein; KEGG: dar:Daro_3521 BRO, N-terminal YP_003157431.1 PFAM: spermine synthase; KEGG: pha:PSHAb0034 spermine/spermidine synthase protein YP_003157432.1 KEGG: pha:PSHAb0033 hypothetical protein YP_003157433.1 PFAM: protein of unknown function UPF0118; KEGG: abo:ABO_2628 hypothetical protein YP_003157434.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; KEGG: dde:Dde_3036 CBS YP_003157435.1 KEGG: lbf:LBF_2391 hypothetical protein YP_003157436.1 PFAM: major facilitator superfamily MFS_1; KEGG: afu:AF0367 oxalate/formate antiporter (OxlT- 2) YP_003157437.1 PFAM: protein of unknown function DUF533; KEGG: pau:PA14_16370 hypothetical protein YP_003157438.1 PFAM: Methyltransferase type 11; thiopurine S- methyltransferase; Methyltransferase type 12; KEGG: amr:AM1_2393 thiopurine S-methyltransferase YP_003157439.1 KEGG: hau:Haur_3411 hypothetical protein YP_003157440.1 PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein; KEGG: gsu:GSU1359 helicase YP_003157441.1 PFAM: NUDIX hydrolase; KEGG: gme:Gmet_1790 NUDIX hydrolase YP_003157442.1 KEGG: pca:Pcar_0295 restriction endonuclease YP_003157443.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvl:Dvul_1622 thioredoxin-disulfide reductase YP_003157444.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: gbm:Gbem_1662 response regulator receiver sensor signal transduction histidine kinase YP_003157445.1 PFAM: protein of unknown function DUF355; KEGG: dde:Dde_0191 hypothetical protein YP_003157446.1 PFAM: 17 kDa surface antigen; KEGG: dvl:Dvul_0804 17 kDa surface antigen YP_003157448.1 PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: dde:Dde_3111 L-serine ammonia-lyase YP_003157449.1 KEGG: swd:Swoo_3713 hypothetical protein YP_003157450.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mac:MA1858 membrane transport protein YP_003157452.1 PFAM: Bile acid:sodium symporter; KEGG: cpc:Cpar_0495 bile acid:sodium symporter YP_003157454.1 KEGG: mgm:Mmc1_1473 conserved hypothetical protein, conserved YP_003157455.1 PFAM: amino acid permease-associated region; KEGG: ckl:CKL_3404 hypothetical protein YP_003157456.1 PFAM: NMT1/THI5 like domain protein; KEGG: dps:DP0502 hypothetical protein YP_003157457.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP0501 ABC transporter, permease protein YP_003157458.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dps:DP0500 ABC transporter, ATP-binding protein YP_003157459.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: cts:Ctha_2041 phosphomethylpyrimidine kinase YP_003157460.1 KEGG: sfu:Sfum_3508 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_003157461.1 KEGG: dps:DP0499 hydroxyethylthiazole kinase; TIGRFAM: hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase YP_003157462.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dvl:Dvul_1567 phosphoadenosine phosphosulfate reductase YP_003157463.1 SMART: regulatory protein Crp; KEGG: dde:Dde_3027 Crp/FNR family transcriptional regulator YP_003157464.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_3029 carbon monoxide dehydrogenase accessory protein CooC YP_003157465.1 KEGG: dvl:Dvul_1133 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane YP_003157466.1 KEGG: dde:Dde_2207 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4- diphosphate synthase; PFAM: IspG family protein YP_003157467.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: neu:NE0396 hypothetical protein YP_003157468.1 PFAM: protein of unknown function DUF1016; KEGG: bpt:Bpet3990 hypothetical protein YP_003157469.1 TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon- binding domain protein; KEGG: dvl:Dvul_1723 prolyl-tRNA synthetase YP_003157470.1 KEGG: dvu:DVU1346 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type YP_003157471.1 PFAM: Peptidase M23; KEGG: dde:Dde_2203 M24/M37 family peptidase YP_003157472.1 PFAM: exonuclease VII small subunit; KEGG: sth:STH1845 exodeoxyribonuclease VII small subunit YP_003157473.1 PFAM: Polyprenyl synthetase; KEGG: dvl:Dvul_1719 polyprenyl synthetase YP_003157474.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: dde:Dde_2200 1-deoxy-D-xylulose-5-phosphate synthase YP_003157475.1 TIGRFAM: alternate F1F0 ATPase F1 subunit gamma; PFAM: H+transporting two-sector ATPase gamma subunit; KEGG: mac:MA2433 H(+)-transporting ATP synthase, subunit gamma YP_003157476.1 KEGG: rfr:Rfer_1168 F0F1 ATP synthase subunit alpha; TIGRFAM: alternate F1F0 ATPase F1 subunit alpha; ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein YP_003157477.1 TIGRFAM: alternate F1F0 ATPase F0 subunit B; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: rfr:Rfer_1167 H+-transporting two-sector ATPase B/B' subunit YP_003157478.1 TIGRFAM: alternate F1F0 ATPase F0 subunit C; ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: pna:Pnap_2331 H+-transporting two-sector ATPase C subunit YP_003157479.1 TIGRFAM: alternate F1F0 ATPase F0 subunit A; ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: rfr:Rfer_1165 F0F1 ATP synthase subunit A YP_003157480.1 TIGRFAM: F1/F0 ATPase Methanosarcina type, subunit 2; KEGG: rfr:Rfer_1164 hypothetical protein YP_003157481.1 TIGRFAM: F0F1-ATPase subunit; KEGG: rfr:Rfer_1163 F0F1-ATPase subunit YP_003157482.1 PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: rfr:Rfer_1162 F0F1 ATP synthase subunit epsilon YP_003157483.1 KEGG: rfr:Rfer_1161 F0F1 ATP synthase subunit beta; TIGRFAM: alternate F1F0 ATPase F1 subunit beta; ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: ATPase AAA YP_003157484.1 KEGG: pin:Ping_2678 hypothetical protein YP_003157485.1 PFAM: UspA domain protein; KEGG: dvu:DVU2100 universal stress protein YP_003157486.1 PFAM: Pirin domain protein; KEGG: dps:DP1287 pirin YP_003157487.1 KEGG: tle:Tlet_0228 hypothetical protein YP_003157488.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: det:DET1392 rhodanese-like domain-containing protein YP_003157489.1 PFAM: pseudouridine synthase; KEGG: maq:Maqu_1686 pseudouridine synthase YP_003157490.1 TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: ana:asr0697 probable 4-oxalocrotonate tautomerase YP_003157491.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: ote:Oter_2041 cupin 2 domain-containing protein YP_003157492.1 KEGG: dde:Dde_0079 tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003157493.1 PFAM: beta-lactamase domain protein; KEGG: dvl:Dvul_0081 beta-lactamase domain- containing protein YP_003157494.1 KEGG: glo:Glov_1548 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_003157496.1 PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: dde:Dde_0342 precorrin-8X methylmutase YP_003157497.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: gbm:Gbem_3791 antibiotic biosynthesis monooxygenase YP_003157498.1 KEGG: pca:Pcar_1476 hypothetical protein YP_003157499.1 PFAM: Heavy metal transport/detoxification protein; KEGG: dvl:Dvul_0933 heavy metal transport/detoxification protein YP_003157500.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dol:Dole_2197 methionine aminopeptidase, type I YP_003157501.1 KEGG: dde:Dde_0718 formate dehydrogenase, beta subunit YP_003157502.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; molydopterin dinucleotide- binding region; KEGG: dvu:DVU0587 formate dehydrogenase, alpha subunit, selenocysteine-containing YP_003157504.1 KEGG: dde:Dde_0714 transposase YP_003157505.1 PFAM: extracellular ligand-binding receptor; KEGG: dde:Dde_0712 lipoprotein YP_003157506.1 KEGG: dde:Dde_0711 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein YP_003157507.1 PFAM: response regulator receiver; Sulfate transporter/antisigma-factor antagonist STAS; SMART: response regulator receiver; KEGG: dde:Dde_0710 response regulator receiver domain-containing protein YP_003157508.1 PFAM: Redoxin domain protein; KEGG: sat:SYN_00592 hypothetical protein YP_003157509.1 SMART: Rhodanese domain protein; KEGG: sfu:Sfum_1513 cyclic nucleotide-binding protein YP_003157510.1 PFAM: DoxX family protein; KEGG: sfu:Sfum_1514 DoxX family protein YP_003157511.1 KEGG: sfu:Sfum_1515 hypothetical protein YP_003157512.1 KEGG: dvl:Dvul_2373 molybdopterin-guanine dinucleotide biosynthesis protein A YP_003157513.1 PFAM: formate dehydrogenase accessory protein; KEGG: dde:Dde_0706 formate dehydrogenase formation protein FdhE YP_003157514.1 PFAM: regulatory protein LysR; KEGG: sfu:Sfum_0033 transcriptional regulator, ModE family YP_003157515.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: dvu:DVU0951 molybdopterin biosynthesis MoeA protein YP_003157516.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: dvl:Dvul_0382 molybdenum cofactor synthesis domain-containing protein YP_003157517.1 KEGG: sat:SYN_02351 cation transport ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; YHS domain protein; Haloacid dehalogenase domain protein hydrolase; SMART: TRASH domain protein YP_003157518.1 KEGG: dvl:Dvul_1258 hypothetical protein YP_003157519.1 KEGG: dde:Dde_2039 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase domain protein; transcription factor CarD; helicase domain protein; TRCF domain protein; SMART: DEAD-like helicases ; helicase domain protein YP_003157520.1 PFAM: SurA domain; KEGG: dvl:Dvul_1262 PpiC-type peptidyl-prolyl cis- trans isomerase YP_003157521.1 SMART: helix-turn-helix domain protein; KEGG: dde:Dde_2036 XRE family transcriptional regulator YP_003157522.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: dvl:Dvul_1264 DNA repair protein RecO YP_003157523.1 KEGG: dde:Dde_2034 glycyl-tRNA synthetase subunit alpha; TIGRFAM: glycyl-tRNA synthetase, alpha subunit; PFAM: glycyl-tRNA synthetase alpha subunit YP_003157524.1 KEGG: dde:Dde_2033 glycyl-tRNA synthetase, beta subunit; TIGRFAM: glycyl-tRNA synthetase, beta subunit YP_003157525.1 TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; KEGG: dvl:Dvul_1267 30S ribosomal protein S20 YP_003157526.1 PFAM: extracellular ligand-binding receptor; KEGG: gsu:GSU1735 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein YP_003157527.1 PFAM: inner-membrane translocator; KEGG: glo:Glov_1862 inner-membrane translocator YP_003157528.1 PFAM: inner-membrane translocator; KEGG: ppd:Ppro_1673 inner-membrane translocator YP_003157529.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: ppd:Ppro_1674 ABC transporter related YP_003157530.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: gme:Gmet_1819 ABC transporter-related protein YP_003157531.1 KEGG: gsu:GSU1729 phenylacetate-CoA ligase YP_003157532.1 KEGG: gur:Gura_1275 hypothetical protein YP_003157533.1 KEGG: ava:Ava_4844 glycosyl transferase WecB/TagA/CpsF; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF YP_003157535.1 PFAM: VacJ family lipoprotein; KEGG: dde:Dde_2301 surface lipoprotein-like YP_003157536.1 PFAM: toluene tolerance family protein; KEGG: sat:SYN_01265 toluene tolerance protein YP_003157537.1 PFAM: Mammalian cell entry related domain protein; KEGG: dde:Dde_2299 ABC transport system substrate-binding protein YP_003157538.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: sat:SYN_01263 ABC-type transport system involved in resistance to organic solvents, ATPase component YP_003157539.1 PFAM: protein of unknown function DUF140; KEGG: dvu:DVU1246 hypothetical protein YP_003157540.1 PFAM: Haloacid dehalogenase domain protein hydrolase type 3; sucrose-6F-phosphate phosphohydrolase; KEGG: taf:THA_1114 HAD hydrolase, IIB family YP_003157541.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dvu:DVU0769 pyridoxamine kinase YP_003157542.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: lip:LI0894 nucleoid DNA-binding protein YP_003157543.1 PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvl:Dvul_0819 radical SAM domain-containing protein YP_003157544.1 KEGG: dvu:DVU3384 zinc resistance-associated protein YP_003157545.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: bvu:BVU_1210 hypothetical protein YP_003157546.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ecv:APECO1_2472 sensor protein ZraS YP_003157547.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: dvu:DVU3381 transcriptional regulatory protein ZraR YP_003157548.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: hch:HCH_00176 amidohydrolase YP_003157550.1 PFAM: protein of unknown function DUF485; KEGG: dvl:Dvul_2489 hypothetical protein YP_003157551.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: dvu:DVU0446 sodium/solute symporter family protein YP_003157552.1 PFAM: protein of unknown function DUF294 nucleotidyltransferase ; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: aae:aq_2107 hypothetical protein YP_003157553.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: sfu:Sfum_2146 protein of unknown function DUF224, cysteine-rich region domain protein YP_003157554.1 KEGG: tbd:Tbd_0485 hypothetical protein YP_003157555.1 PFAM: regulatory protein TetR; KEGG: gme:Gmet_0803 TetR family transcriptional regulator YP_003157556.1 PFAM: Integrase catalytic region; KEGG: bpl:BURPS1106A_3886 transposase B YP_003157557.1 PFAM: transposase IS3/IS911 family protein; KEGG: dvu:DVU0556 ISDvu3, transposase OrfA YP_003157558.1 KEGG: sfu:Sfum_2600 transposase IS116/IS110/IS902 family protein YP_003157559.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: glo:Glov_0136 multi-sensor signal transduction histidine kinase YP_003157560.1 KEGG: sat:SYN_01028 LuxR family regulatory protein; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; PAC repeat- containing protein; PAS domain containing protein YP_003157561.1 PFAM: protein of unknown function DUF1568; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; KEGG: dol:Dole_1872 hypothetical protein YP_003157562.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: dar:Daro_2052 transport-associated protein YP_003157564.1 KEGG: mgm:Mmc1_1949 diguanylate cyclase/phosphodiesterase; TIGRFAM: ammonium transporter; diguanylate cyclase; PAS sensor protein; PFAM: Rh family protein/ammonium transporter; EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_003157565.1 TIGRFAM: cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Cysteinyl-tRNA synthetase class Ia; KEGG: dol:Dole_1166 cysteine synthase YP_003157566.1 PFAM: response regulator receiver; Hpt domain protein; SMART: response regulator receiver; KEGG: dar:Daro_3006 PAS YP_003157567.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: amt:Amet_3141 LuxR family transcriptional regulator YP_003157569.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rba:RB3816 3-hydroxyisobutyrate dehydrogenase YP_003157570.1 KEGG: dvl:Dvul_0350 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003157571.1 PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: dde:Dde_3234 two component Fis family transcriptional regulator YP_003157573.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_003157574.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dvl:Dvul_0347 L-lactate transport YP_003157575.1 PFAM: FAD linked oxidase domain protein; KEGG: dvl:Dvul_0346 FAD linked oxidase domain- containing protein YP_003157576.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3240 iron-sulfur cluster-binding protein YP_003157577.1 KEGG: dde:Dde_3241 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; DRTGG domain protein YP_003157578.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: dvl:Dvul_0343 acetate kinase YP_003157579.1 PFAM: protein of unknown function DUF945; KEGG: sfu:Sfum_2685 hypothetical protein YP_003157580.1 KEGG: glo:Glov_0560 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; ATP-binding region ATPase domain protein YP_003157581.1 PFAM: metallophosphoesterase; KEGG: pph:Ppha_1460 metallophosphoesterase YP_003157582.1 KEGG: pph:Ppha_1459 SMC domain protein YP_003157583.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: ote:Oter_2204 RND family efflux transporter MFP subunit YP_003157584.1 PFAM: protein of unknown function DUF214; KEGG: ote:Oter_2205 hypothetical protein YP_003157585.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: ote:Oter_2206 ABC transporter related YP_003157586.1 PFAM: cytochrome c class III; KEGG: dvu:DVU2809 cytochrome c3 YP_003157587.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: sat:SYN_01250 protein required for formate dehydrogenase activity YP_003157588.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: deb:DehaBAV1_1201 rhodanese domain-containing protein YP_003157589.1 KEGG: dde:Dde_1959 hypothetical protein YP_003157590.1 PFAM: protein of unknown function DUF374; KEGG: dvl:Dvul_1415 hypothetical protein YP_003157591.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: dvl:Dvul_1414 lipid A biosynthesis acyltransferase YP_003157592.1 KEGG: dde:Dde_0136 adenine deaminase; TIGRFAM: adenine deaminase; PFAM: amidohydrolase YP_003157593.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dvl:Dvul_0296 methyl-accepting chemotaxis sensory transducer YP_003157594.1 PFAM: peptidase S24 and S26 domain protein; KEGG: dde:Dde_1980 transcriptional regulator YP_003157595.1 KEGG: dvl:Dvul_1412 hypothetical protein YP_003157596.1 PFAM: protein of unknown function DUF195; KEGG: ppd:Ppro_0011 hypothetical protein YP_003157597.1 PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: son:SO_1409 hypothetical protein YP_003157598.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: pca:Pcar_1175 catalase/peroxidase HPI YP_003157599.1 TIGRFAM: ATPase P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: cyt:cce_5202 cation-transporting ATPase E1- E2 type YP_003157600.1 KEGG: sat:SYN_02956 transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-3 domain protein; helix-turn-helix Fis- type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; PAS domain containing protein YP_003157601.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ppd:Ppro_0399 antibiotic biosynthesis monooxygenase YP_003157602.1 KEGG: sfu:Sfum_0591 twin-arginine translocation pathway signal YP_003157603.1 KEGG: fjo:Fjoh_4025 hypothetical protein YP_003157604.1 KEGG: dvl:Dvul_0140 lipoprotein YP_003157606.1 KEGG: smd:Smed_3790 hypothetical protein YP_003157607.1 PFAM: protein of unknown function DUF1214; KEGG: reu:Reut_B5159 hypothetical protein YP_003157608.1 PFAM: Radical SAM domain protein; KEGG: ecv:APECO1_2678 regulator of arylsulfatase activity YP_003157609.1 PFAM: sulfatase; KEGG: bbt:BBta_0599 arylsulfatase YP_003157610.1 KEGG: rba:RB1780 hypothetical protein YP_003157611.1 KEGG: mca:MCA0470 hypothetical protein YP_003157612.1 KEGG: mca:MCA2026 hypothetical protein YP_003157613.1 KEGG: reh:H16_A2157 hypothetical protein YP_003157614.1 PFAM: OmpA/MotB domain protein; von Willebrand factor type A; KEGG: sat:SYN_00198 outer membrane porin protein YP_003157615.1 KEGG: sat:SYN_02956 transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-3 domain protein; helix-turn-helix Fis- type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003157616.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ppd:Ppro_0399 antibiotic biosynthesis monooxygenase YP_003157617.1 PFAM: beta-lactamase domain protein; KEGG: gur:Gura_2459 beta-lactamase domain- containing protein YP_003157618.1 PFAM: Carbohydrate-selective porin OprB; KEGG: rba:RB9508 hypothetical protein YP_003157619.1 PFAM: 20S proteasome A and B subunits; KEGG: dde:Dde_2124 ATP-dependent protease peptidase subunit YP_003157620.1 KEGG: dde:Dde_2014 ATP-dependent protease ATP- binding subunit; TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; SMART: ATPase AAA YP_003157621.1 KEGG: dde:Dde_2015 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003157622.1 KEGG: rpi:Rpic_0732 hypothetical protein YP_003157623.1 KEGG: psp:PSPPH_0354 hypothetical protein YP_003157624.1 PFAM: Metal-dependent hydrolase HDOD; metal- dependent phosphohydrolase HD sub domain; KEGG: tye:THEYE_A0619 HD domain protein YP_003157625.1 KEGG: dvl:Dvul_1652 glycine dehydrogenase subunit 2 YP_003157626.1 PFAM: glycine cleavage system P-protein; KEGG: dvu:DVU1425 glycine dehydrogenase subunit 1 YP_003157627.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: dvl:Dvul_1650 glycine cleavage system H protein YP_003157628.1 KEGG: maq:Maqu_0264 hypothetical protein YP_003157629.1 PFAM: SNARE associated Golgi protein; KEGG: ter:Tery_1993 hypothetical protein YP_003157630.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dde:Dde_3609 response regulator receiver domain-containing protein YP_003157631.1 PFAM: aminoglycoside phosphotransferase; KEGG: dol:Dole_2391 hypothetical protein YP_003157633.1 PFAM: plasmid stabilization system; KEGG: mhu:Mhun_0714 hypothetical protein YP_003157634.1 TIGRFAM: addiction module component, TIGR02574 family; KEGG: cpc:Cpar_1383 addiction module component, TIGR02574 family YP_003157635.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: drm:Dred_1317 uracil transporter YP_003157636.1 PFAM: glycosyl transferase family 2; KEGG: mav:MAV_4475 probable membrane sugar transferase YP_003157637.1 TIGRFAM: dethiobiotin synthase; KEGG: sfu:Sfum_3711 dethiobiotin synthase YP_003157638.1 PFAM: aminotransferase class I and II; KEGG: sfu:Sfum_3712 aminotransferase, class I and II YP_003157640.1 PFAM: Beta-ketoacyl synthase; KEGG: sat:SYN_02566 3-oxoacyl-[acyl-carrier- protein] synthase YP_003157641.1 KEGG: sfu:Sfum_3716 phosphopantetheine-binding YP_003157642.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_2658 short chain dehydrogenase/reductase family oxidoreductase YP_003157643.1 KEGG: sfu:Sfum_3718 conserved hypothetical cytosolic protein YP_003157644.1 KEGG: glo:Glov_2370 biotin synthase; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003157645.1 KEGG: dde:Dde_1832 magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region; SMART: CBS domain containing protein YP_003157646.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dvl:Dvul_1312 signal transduction protein YP_003157647.1 KEGG: dde:Dde_2077 protein-L-isoaspartate O- methyltransferase; TIGRFAM: protein-L-isoaspartate O- methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase YP_003157648.1 KEGG: dvl:Dvul_1315 hypothetical protein YP_003157649.1 PFAM: Lytic transglycosylase catalytic; KEGG: gbm:Gbem_1873 lytic transglycosylase catalytic protein YP_003157650.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dvl:Dvul_1316 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase YP_003157651.1 KEGG: sat:SYN_00125 pili retraction protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase AAA YP_003157652.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dol:Dole_3052 twitching motility protein YP_003157653.1 KEGG: dol:Dole_3051 response regulator receiver protein YP_003157654.1 KEGG: lip:LI0371 hypothetical protein YP_003157656.1 PFAM: Inositol phosphatase/fructose-16- bisphosphatase; KEGG: dde:Dde_2069 fructose-1,6-bisphosphatase YP_003157657.1 KEGG: dvu:DVU1840 glycoprotease family metalloendopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease YP_003157658.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dvl:Dvul_1323 thioredoxin YP_003157659.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: dde:Dde_2065 lipoprotein YP_003157660.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gme:Gmet_1508 4Fe-4S ferredoxin, iron-sulfur binding protein YP_003157661.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dps:DP0979 methyl-accepting chemotaxis protein YP_003157662.1 PFAM: glucose sorbosone dehydrogenase; KEGG: cya:CYA_2304 glucose/sorbosone dehydrogenase family protein YP_003157663.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pae:PA0848 alkyl hydroperoxide reductase YP_003157664.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hmo:HM1_1613 phosphoglycolate phosphatase YP_003157665.1 PFAM: histone deacetylase superfamily; KEGG: dol:Dole_3178 histone deacetylase superfamily protein YP_003157666.1 PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: mrd:Mrad2831_1539 ornithine cyclodeaminase YP_003157667.1 PFAM: alanine racemase domain protein; KEGG: bav:BAV0669 pyridoxal phosphate binding aldolase YP_003157668.1 PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dps:DP1276 methyl-accepting chemotaxis protein YP_003157669.1 KEGG: pfo:Pfl01_4666 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003157670.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: rrs:RoseRS_1742 PfpI family intracellular peptidase YP_003157671.1 PFAM: conserved hypothetical protein; KEGG: pfl:PFL_0591 hypothetical protein YP_003157672.1 KEGG: bvi:Bcep1808_5302 hypothetical protein YP_003157673.1 KEGG: dvl:Dvul_1570 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; helix-turn-helix domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; helix-turn-helix domain protein; PAS domain containing protein YP_003157674.1 PFAM: sulfatase; KEGG: ecy:ECSE_4248 hypothetical protein YP_003157675.1 PFAM: Integrase catalytic region; KEGG: bpl:BURPS1106A_3886 transposase B YP_003157676.1 PFAM: transposase IS3/IS911 family protein; KEGG: dvu:DVU0556 ISDvu3, transposase OrfA YP_003157677.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: baf:BAPKO_0230 6-phosphogluconolactonase YP_003157678.1 PFAM: cell wall hydrolase SleB; KEGG: pfl:PFL_2395 hypothetical protein YP_003157679.1 PFAM: Radical SAM domain protein; cobalamin B12- binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gur:Gura_4335 radical SAM domain-containing protein YP_003157680.1 PFAM: protein of unknown function DUF362; KEGG: ote:Oter_2649 hypothetical protein YP_003157681.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bth:BT_0775 ferredoxin-type protein YP_003157682.1 PFAM: alpha/beta hydrolase fold; KEGG: ava:Ava_5030 alpha/beta hydrolase fold YP_003157683.1 PFAM: manganese and iron superoxide dismutase; KEGG: mca:MCA2067 superoxide dismutase, Fe YP_003157684.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sfu:Sfum_2937 hemerythrin HHE cation binding domain protein YP_003157685.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: sat:SYN_03206 ABC transporter ATP-binding protein YP_003157686.1 PFAM: SufBD protein; KEGG: sat:SYN_02867 ABC transporter system permease involved in Fe-S cluster assembly YP_003157687.1 PFAM: beta-lactamase domain protein; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: rba:RB11174 hypothetical protein YP_003157688.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pca:Pcar_2856 hypothetical protein YP_003157689.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pca:Pcar_2857 hypothetical protein YP_003157690.1 PFAM: protein of unknown function DUF305; KEGG: dsh:Dshi_0010 hypothetical protein YP_003157691.1 KEGG: pto:PTO0801 sulfur oxygenase reductase YP_003157692.1 PFAM: 67 kDa myosin-cross-reactive antigen family protein; KEGG: sml:Smlt2093 myosin-crossreactive antigen YP_003157693.1 PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; KEGG: mem:Memar_0467 5'-nucleotidase domain- containing protein YP_003157694.1 PFAM: ThiJ/PfpI domain protein; KEGG: nmu:Nmul_A1370 ThiJ/PfpI YP_003157695.1 PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_2931 protein of unknown function DUF81 YP_003157696.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: gfo:GFO_1282 periplasmic 5'-nucleotidase YP_003157697.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cau:Caur_0607 TrkA domain-containing protein YP_003157698.1 PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: bpy:Bphyt_4470 phospholipase D/transphosphatidylase YP_003157699.1 KEGG: bba:Bd1528 hypothetical protein YP_003157700.1 PFAM: Catalase domain protein; KEGG: xca:xccb100_3235 hypothetical protein YP_003157701.1 KEGG: gbm:Gbem_0145 hypothetical protein YP_003157702.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_0146 hemerythrin HHE cation binding domain protein YP_003157704.1 PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: scl:sce2646 oxidoreductase YP_003157705.1 PFAM: SNARE associated Golgi protein; KEGG: hch:HCH_03964 hypothetical protein YP_003157706.1 KEGG: hch:HCH_03963 hypothetical protein YP_003157707.1 PFAM: glycosyl transferase group 1; KEGG: hch:HCH_03962 glycosyltransferase YP_003157708.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ote:Oter_0791 endonuclease/exonuclease/phosphatase YP_003157709.1 PFAM: MscS Mechanosensitive ion channel; transport- associated; KEGG: rba:RB4461 hypothetical protein YP_003157710.1 KEGG: sbn:Sbal195_1938 membrane protein YP_003157711.1 PFAM: transport-associated; KEGG: gbm:Gbem_3235 transport-associated YP_003157712.1 PFAM: Ion transport protein; KEGG: ana:alr5318 potassium channel protein YP_003157713.1 KEGG: lbf:LBF_5041 sensor histidine kinase of a two component response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein YP_003157714.1 PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: dde:Dde_3099 methylated-DNA--protein-cysteine methyltransferase YP_003157716.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sfu:Sfum_2937 hemerythrin HHE cation binding domain protein YP_003157717.1 PFAM: protein of unknown function DUF488; KEGG: sfu:Sfum_3731 protein of unknown function DUF488 YP_003157718.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: gsu:GSU1545 amino acid transporter LysE YP_003157719.1 KEGG: gur:Gura_0792 hypothetical protein YP_003157720.1 KEGG: rpe:RPE_0060 conserved hypothetical protein, DNA helicase YP_003157721.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: sfu:Sfum_2600 transposase IS116/IS110/IS902 family protein YP_003157722.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: syn:slr1115 hypothetical protein YP_003157723.1 KEGG: dac:Daci_4415 NIPSNAP family protein YP_003157724.1 PFAM: Auxin Efflux Carrier; KEGG: bcj:BCAM1445 transporter YP_003157725.1 KEGG: sfu:Sfum_3893 hypothetical protein YP_003157726.1 KEGG: ade:Adeh_0227 hypothetical protein YP_003157727.1 KEGG: sus:Acid_0266 hypothetical protein YP_003157728.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; Target SNARE coiled-coil containing protein; histidine kinase HAMP region domain protein; KEGG: dps:DP1276 methyl-accepting chemotaxis protein YP_003157729.1 KEGG: mlo:mlr4314 hypothetical protein YP_003157730.1 PFAM: extracellular ligand-binding receptor; KEGG: dra:DR_2122 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein YP_003157731.1 PFAM: inner-membrane translocator; KEGG: dge:Dgeo_0734 inner-membrane translocator YP_003157732.1 PFAM: inner-membrane translocator; KEGG: dge:Dgeo_0733 inner-membrane translocator YP_003157733.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dra:DR_2119 branched-chain amino acid ABC transporter, ATP-binding protein YP_003157734.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dra:DR_2118 branched-chain amino acid ABC transporter, ATP-binding protein YP_003157735.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: sfu:Sfum_0079 protein of unknown function DUF224, cysteine-rich region domain protein YP_003157736.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: sfu:Sfum_0080 iron-sulfur cluster binding protein YP_003157737.1 PFAM: protein of unknown function DUF162; KEGG: sfu:Sfum_0081 protein of unknown function DUF162 YP_003157739.1 PFAM: thioesterase superfamily protein; KEGG: asa:ASA_2794 acyl-CoA thioester hydrolase YP_003157740.1 KEGG: dvl:Dvul_1570 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; ATP-binding region ATPase domain protein YP_003157741.1 KEGG: sfu:Sfum_4101 hypothetical protein YP_003157742.1 PFAM: PspC domain protein; KEGG: dde:Dde_3224 phage shock protein C, PspC YP_003157743.1 KEGG: dde:Dde_3225 hypothetical protein YP_003157744.1 TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; KEGG: dde:Dde_3226 phage shock protein A YP_003157745.1 KEGG: dde:Dde_3227 Fis family transcriptional regulator; TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003157746.1 PFAM: GTP-binding protein HSR1-related; KEGG: slo:Shew_1589 ribosomal biogenesis GTPase YP_003157747.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: tel:tll1181 oligopeptidase A YP_003157748.1 KEGG: ENSORLG00000014822. YP_003157749.1 KEGG: mca:MCA2526 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_003157750.1 PFAM: peptidase M50; KEGG: dps:DP0062 hypothetical protein YP_003157751.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy- lyase; PFAM: flavoprotein; KEGG: dvl:Dvul_0082 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_003157752.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dvu:DVU2042 Fic family protein YP_003157753.1 KEGG: dvl:Dvul_2614 von Willebrand factor, type A YP_003157754.1 PFAM: transposase IS3/IS911 family protein; KEGG: dvl:Dvul_2601 transposase IS3/IS911 family protein YP_003157755.1 PFAM: Integrase catalytic region; KEGG: dvu:DVU2010 ISD1, transposase OrfB YP_003157757.1 KEGG: sfu:Sfum_1341 hypothetical protein YP_003157758.1 KEGG: ppd:Ppro_0164 hypothetical protein YP_003157762.1 KEGG: MYH14; myosin, heavy chain 14 ; K10352 myosin heavy chain YP_003157763.1 PFAM: MotA/TolQ/exbB proton channel; KEGG: mar:MAE_07950 heat repeat-containing protein YP_003157765.1 PFAM: Biopolymer transport protein exbD/TolR; KEGG: dps:DP2972 biopolymer transport protein (exbD2) YP_003157767.1 PFAM: Lytic transglycosylase catalytic; KEGG: gtn:GTNG_0706 lytic transglycosylase YP_003157769.1 PFAM: peptidase C1A papain; KEGG: cau:Caur_2927 peptidase C1A papain YP_003157770.1 PFAM: protein of unknown function DUF323; SMART: serine/threonine protein kinase; KEGG: mar:MAE_42710 serine/threonine kinase YP_003157771.1 KEGG: NACHT domain-containing protein ; K11127 telomerase protein component 1 YP_003157773.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: rca:Rcas_4118 polynucleotide adenylyltransferase/metal dependent phosphohydrolase YP_003157774.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mva:Mvan_5473 methyltransferase type 11 YP_003157775.1 KEGG: cac:CAC0752 DNA ligase III YP_003157776.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: scl:sce6902 polyA polymerase related protein YP_003157778.1 PFAM: ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dol:Dole_0240 ATPase central domain- containing protein YP_003157780.1 PFAM: protein of unknown function DUF323; KEGG: sfu:Sfum_0556 peptidase C14, caspase catalytic subunit P20 YP_003157781.1 PFAM: protein of unknown function DUF323; KEGG: mac:MA0649 hypothetical protein YP_003157782.1 PFAM: ATPase associated with various cellular activities AAA_5; KEGG: GE13493 gene product from transcript GE13493- RA ; K01516 nucleoside-triphosphatase YP_003157783.1 KEGG: bur:Bcep18194_C7220 cobalamin biosynthesis protein, CobT YP_003157785.1 KEGG: sml:Smlt0021 hypothetical protein YP_003157786.1 PFAM: protein of unknown function DUF323; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: mar:MAE_42710 serine/threonine kinase YP_003157787.1 PFAM: glycosyl transferase family 2; KEGG: hch:HCH_02233 cell wall biosynthesis glycosyltransferase YP_003157788.1 PFAM: Radical SAM domain protein; KEGG: neq:NEQ013 hypothetical protein YP_003157789.1 PFAM: glycosyl transferase group 1; KEGG: fra:Francci3_0721 glycosyl transferase, group 1 YP_003157790.1 PFAM: glycosyl transferase family 2; KEGG: pth:PTH_0601 glycosyltransferase YP_003157791.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rrs:RoseRS_3391 radical SAM domain-containing protein YP_003157792.1 PFAM: glycosyl transferase family 2; KEGG: cts:Ctha_0383 glycosyl transferase family 2 YP_003157793.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pas:Pars_2244 radical SAM domain-containing protein YP_003157796.1 PFAM: protein of unknown function UPF0027; KEGG: net:Neut_0880 hypothetical protein YP_003157797.1 PFAM: ROSMUCR transcriptional regulator; KEGG: dde:Dde_0303 MucR family transcriptional regulator YP_003157799.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: asa:ASA_pAsa106 mobilization relaxase YP_003157800.1 KEGG: sit:TM1040_3583 hypothetical protein YP_003157802.1 KEGG: hypothetical protein YP_003157803.1 PFAM: CI repressor; KEGG: dde:Dde_1980 transcriptional regulator YP_003157804.1 PFAM: transposase IS3/IS911 family protein; KEGG: dvl:Dvul_2601 transposase IS3/IS911 family protein YP_003157805.1 PFAM: Integrase catalytic region; KEGG: dvu:DVU2010 ISD1, transposase OrfB YP_003157806.1 SMART: ATPase AAA; KEGG: mja:MJ0104 DNA-binding protein YP_003157807.1 KEGG: hypothetical protein YP_003157808.1 KEGG: hypothetical protein YP_003157809.1 KEGG: hypothetical protein YP_003157810.1 PFAM: protein of unknown function DUF1232; KEGG: lbl:LBL_2919 hypothetical protein YP_003157811.1 KEGG: dvl:Dvul_2599 transcriptional regulator-like protein YP_003157814.1 PFAM: NERD domain protein; KEGG: sfu:Sfum_2302 superfamily I DNA and RNA helicases-like YP_003157815.1 KEGG: sat:SYN_02988 transcriptional regulator YP_003157816.1 KEGG: aci:ACIAD1068 hypothetical protein YP_003157817.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: mtp:Mthe_0488 ADP-ribosylation/crystallin J1 YP_003157818.1 PFAM: Domain of unknown function DUF1814; KEGG: dol:Dole_3139 hypothetical protein YP_003157819.1 KEGG: dol:Dole_3138 hypothetical protein YP_003157820.1 PFAM: ATPase AAA central domain protein; SMART: ATPase AAA; KEGG: dol:Dole_0240 ATPase central domain- containing protein YP_003157821.1 KEGG: maq:Maqu_1301 hypothetical protein YP_003157824.1 PFAM: helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein; KEGG: bxe:Bxe_A0849 hypothetical protein YP_003157825.1 KEGG: bxe:Bxe_A0848 hypothetical protein YP_003157826.1 KEGG: cpb:Cphamn1_1673 hypothetical protein YP_003157827.1 KEGG: shm:Shewmr7_2866 hypothetical protein YP_003157828.1 KEGG: vfm:VFMJ11_1559 hypothetical protein YP_003157829.1 KEGG: vfm:VFMJ11_1560 hypothetical protein YP_003157830.1 KEGG: vpa:VP0389 hypothetical protein YP_003157831.1 KEGG: pla:Plav_0317 hypothetical protein YP_003157832.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: gdi:GDI2891 ubiquitin-activating enzyme YP_003157833.1 KEGG: gdi:GDI2892 hypothetical protein YP_003157834.1 PFAM: Patatin; KEGG: gdi:GDI2893 patatin-like phospholipase YP_003157835.1 KEGG: dde:Dde_2949 DNA-binding protein YP_003157837.1 KEGG: sde:Sde_2752 ATP-dependent Lon protease YP_003157838.1 PFAM: PglZ domain protein; KEGG: sde:Sde_2753 hypothetical protein YP_003157839.1 KEGG: syp:SYNPCC7002_F0003 hypothetical protein YP_003157840.1 KEGG: sde:Sde_2756 hypothetical protein YP_003157841.1 KEGG: sde:Sde_2757 hypothetical protein YP_003157842.1 KEGG: sde:Sde_2758 hypothetical protein YP_003157843.1 KEGG: sde:Sde_2759 hypothetical protein YP_003157844.1 PFAM: NERD domain protein; KEGG: tth:TTC1537 hypothetical protein YP_003157846.1 PFAM: metallophosphoesterase; KEGG: ajs:Ajs_0823 metallophosphoesterase YP_003157847.1 PFAM: metallophosphoesterase; KEGG: reh:PHG181 hypothetical protein YP_003157849.1 KEGG: bth:BT_2329 hypothetical protein YP_003157850.1 PFAM: metallophosphoesterase; KEGG: glo:Glov_2858 hypothetical protein YP_003157851.1 PFAM: integrase family protein; KEGG: lip:LIB023 integrase YP_003157852.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dol:Dole_0611 TolC family type I secretion outer membrane protein YP_003157853.1 PFAM: Hemolysin-type calcium-binding region; KEGG: dol:Dole_0612 hemolysin-type calcium-binding region YP_003157854.1 KEGG: dol:Dole_0617 hypothetical protein YP_003157855.1 PFAM: GAF domain protein; KEGG: dol:Dole_0618 phytochrome sensor protein YP_003157856.1 KEGG: dol:Dole_0619 M50 family peptidase YP_003157857.1 PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; KEGG: dol:Dole_0620 preprotein translocase subunit SecA YP_003157858.1 KEGG: dol:Dole_0621 hemolysin D YP_003157860.1 PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_1492 glycosyl transferase family protein YP_003157861.1 PFAM: amino acid-binding ACT domain protein; KEGG: dps:DP0451 aspartate kinase YP_003157862.1 PFAM: extracellular solute-binding protein family 5; KEGG: pmy:Pmen_2060 extracellular solute-binding protein YP_003157863.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_3303 peptide ABC transporter, permease protein YP_003157864.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pap:PSPA7_3488 ABC transporter permease YP_003157865.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: rsp:RSP_0701 peptide ABC transporter ATPase YP_003157866.1 PFAM: cation transporter; KEGG: dde:Dde_0567 TrkH family potassium uptake protein YP_003157867.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: dvl:Dvul_2522 TrkA domain-containing protein YP_003157868.1 KEGG: aeh:Mlg_1456 esterase YP_003157869.1 PFAM: type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: lpf:lpl2488 hypothetical protein YP_003157870.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mag:amb1211 response regulator YP_003157871.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: mex:Mext_0040 phosphoketolase YP_003157873.1 KEGG: dde:Dde_0656 iron-sulfur cluster-binding protein YP_003157874.1 KEGG: dol:Dole_0300 iron-sulfur cluster-binding protein YP_003157877.1 KEGG: dde:Dde_0659 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; PAS domain containing protein; PAC repeat-containing protein YP_003157878.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: pol:Bpro_4758 filamentation induced by cAMP protein Fic YP_003157879.1 PFAM: SpoVT/AbrB domain protein; KEGG: gur:Gura_1478 transcriptional regulator/antitoxin, MazE YP_003157880.1 PFAM: HicB family protein; KEGG: rso:RSc1697 hypothetical protein YP_003157881.1 KEGG: oan:Oant_0622 hypothetical protein YP_003157882.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0102 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003157883.1 PFAM: ferredoxin-dependent glutamate synthase; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0103 ferredoxin-dependent glutamate synthase YP_003157884.1 KEGG: sfu:Sfum_1725 glutamate synthase (NADPH) YP_003157885.1 KEGG: cpb:Cphamn1_2251 mitomycin resistance protein YP_003157886.1 KEGG: bsu:BSU21350 hypothetical protein YP_003157887.1 KEGG: dde:Dde_0019 hypothetical protein YP_003157888.1 PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_2114 thioredoxin family protein YP_003157889.1 PFAM: shikimate kinase; KEGG: dvl:Dvul_2092 shikimate kinase II YP_003157890.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2389 iron-sulfur cluster-binding protein YP_003157891.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2390 dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits-like YP_003157892.1 KEGG: dvl:Dvul_1397 hypothetical protein YP_003157893.1 PFAM: SlyX family protein; KEGG: mmw:Mmwyl1_1260 SlyX family protein YP_003157894.1 PFAM: Metal-dependent hydrolase HDOD; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: cau:Caur_1383 PAS sensor protein YP_003157895.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dau:Daud_1746 cobyrinic acid a,c-diamide synthase YP_003157896.1 PFAM: aminotransferase class I and II; KEGG: lbf:LBF_0879 aspartate/tyrosine/aromatic aminotransferase YP_003157897.1 PFAM: NUDIX hydrolase; KEGG: sth:STH2366 mutator MutT protein YP_003157898.1 KEGG: dvl:Dvul_2202 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_003157899.1 KEGG: hau:Haur_1165 hypothetical protein YP_003157900.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: gsu:GSU0294 HD domain-containing protein YP_003157901.1 KEGG: dde:Dde_1790 hypothetical protein YP_003157902.1 KEGG: gur:Gura_0292 poly(A) polymerase; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region YP_003157903.1 KEGG: dvu:DVU0801 excinuclease ABC, C subunit; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain protein; helix-hairpin- helix motif; UvrB/UvrC protein; SMART: excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1 YP_003157904.1 KEGG: sfu:Sfum_0090 cytochrome c family protein YP_003157905.1 PFAM: cytochrome B561; KEGG: dol:Dole_3004 cytochrome b561 YP_003157906.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: hch:HCH_00424 threonine efflux protein YP_003157907.1 PFAM: protein of unknown function DUF1393; KEGG: tpe:Tpen_1668 hypothetical protein YP_003157911.1 PFAM: NUDIX hydrolase; KEGG: sgo:SGO_1335 dATP pyrophosphohydrolase YP_003157912.1 PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: cts:Ctha_1514 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003157913.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: dde:Dde_1958 pseudouridine synthase, Rsu YP_003157914.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: cph:Cpha266_1928 protein of unknown function DUF306, MetA and HslJ YP_003157915.1 PFAM: carbonic anhydrase; KEGG: cts:Ctha_1360 carbonate dehydratase YP_003157916.1 PFAM: extracellular ligand-binding receptor; KEGG: sfu:Sfum_0378 extracellular ligand-binding receptor YP_003157917.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: pca:Pcar_2115 coenzyme F390 synthetase YP_003157918.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: vei:Veis_0289 ABC transporter related YP_003157919.1 PFAM: inner-membrane translocator; KEGG: ppd:Ppro_1673 inner-membrane translocator YP_003157920.1 PFAM: inner-membrane translocator; KEGG: glo:Glov_1862 inner-membrane translocator YP_003157921.1 KEGG: dvl:Dvul_0634 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; ATP-binding region ATPase domain protein YP_003157922.1 KEGG: mbu:Mbur_0399 MCP methyltransferase, CheR- type; TIGRFAM: PAS sensor protein; PFAM: MCP methyltransferase CheR-type; chemotaxis protein CheB; PAS fold-4 domain protein; PAS fold domain protein; SMART: MCP methyltransferase CheR-type; PAS domain containing protein YP_003157923.1 KEGG: gme:Gmet_0666 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003157924.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dvl:Dvul_2053 histidine kinase YP_003157925.1 KEGG: dar:Daro_0244 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; Cache type 2 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein YP_003157926.1 KEGG: gbm:Gbem_1595 MCP methyltransferase, CheR- type; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_003157927.1 PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: gbm:Gbem_1594 CheA signal transduction histidine kinase YP_003157928.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvl:Dvul_1541 response regulator receiver protein YP_003157929.1 KEGG: gur:Gura_2995 sulfate transporter/antisigma- factor antagonist STAS YP_003157930.1 PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2108 methyl-accepting chemotaxis sensory transducer YP_003157931.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: gbm:Gbem_3155 chemotaxis protein CheW YP_003157932.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dde:Dde_1077 methyl-accepting chemotaxis sensory transducer YP_003157933.1 KEGG: dvu:DVU2616 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; PAC repeat- containing protein; PAS domain containing protein YP_003157934.1 KEGG: dvl:Dvul_1570 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; ATP-binding region ATPase domain protein YP_003157935.1 KEGG: glo:Glov_3113 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein; ATP- binding region ATPase domain protein YP_003157936.1 KEGG: gbm:Gbem_1227 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; ATP-binding region ATPase domain protein; PAS domain containing protein YP_003157937.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gme:Gmet_2431 response regulator receiver domain-containing protein YP_003157938.1 KEGG: gme:Gmet_2418 response regulator receiver (CheY-like) modulated chemotaxis protein CheB; PFAM: chemotaxis protein CheB; response regulator receiver; SMART: response regulator receiver YP_003157939.1 PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type; KEGG: dvl:Dvul_1539 protein-glutamate O- methyltransferase YP_003157940.1 PFAM: CheD family protein; KEGG: gme:Gmet_2419 chemotaxis protein CheD YP_003157941.1 KEGG: sfr:Sfri_1020 two component, sigma54 specific, transcriptional regulator, fis family protein; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-3 domain protein; helix-turn-helix Fis- type; PAS fold domain protein; PAS fold-4 domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; PAC repeat-containing protein; PAS domain containing protein YP_003157942.1 KEGG: dvu:DVU2616 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein YP_003157943.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: pca:Pcar_1788 transposase and inactivated derivatives YP_003157944.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: cau:Caur_3292 glycerol kinase YP_003157945.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: mta:Moth_0440 CoB--CoM heterodisulfide reductase subunit B YP_003157946.1 KEGG: drm:Dred_0633 heterodisulfide reductase, C subunit YP_003157947.1 KEGG: dvl:Dvul_1229 anaerobic glycerol-3-phosphate dehydrogenase subunit B; TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003157948.1 PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dvl:Dvul_1228 FAD dependent oxidoreductase YP_003157949.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: bid:Bind_0377 DeoR family transcriptional regulator YP_003157950.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: hch:HCH_06967 ABC-type sugar transport system, ATPase components YP_003157951.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: ppf:Pput_3477 ABC transporter related YP_003157952.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_1027 binding-protein-dependent transport systems inner membrane component YP_003157953.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_1595 binding-protein-dependent transport systems inner membrane component YP_003157954.1 KEGG: pfo:Pfl01_3631 hypothetical protein YP_003157955.1 PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_06973 ABC-type sugar transport system, periplasmic component YP_003157956.1 PFAM: molybdopterin binding domain; KEGG: gur:Gura_2409 molybdopterin binding domain- containing protein YP_003157957.1 PFAM: protein of unknown function DUF163; KEGG: dde:Dde_2291 hypothetical protein YP_003157958.1 PFAM: type IV pilus assembly PilZ YP_003157960.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dol:Dole_2598 cobyrinic acid ac-diamide synthase YP_003157961.1 KEGG: dde:Dde_1318 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein YP_003157962.1 PFAM: response regulator receiver; KEGG: sat:SYN_01373 hydrogenase transcriptional regulatory protein YP_003157963.1 KEGG: dvu:DVU0741 hypothetical protein YP_003157964.1 KEGG: mmp:MMP1308 translaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase YP_003157965.1 KEGG: dde:Dde_1968 TRASH YP_003157966.1 KEGG: pth:PTH_0205 7,8-dihydro-6- hydroxymethylpterin-pyrophosphokinase; TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropter idinepyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK YP_003157967.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dde:Dde_1971 tyrosine recombinase XerD subunit YP_003157968.1 PFAM: Polynucleotide adenylyltransferase region; phosphoesterase DHHA1; CBS domain containing protein; phosphoesterase RecJ domain protein; SMART: CBS domain containing protein; KEGG: dvu:DVU1653 polyA polymerase family protein YP_003157969.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: dvl:Dvul_1824 extracellular solute-binding protein YP_003157970.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2307 amino acid ABC transporter permease YP_003157971.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dvl:Dvul_1826 ABC transporter related YP_003157972.1 PFAM: histidine triad (HIT) protein; KEGG: dde:Dde_1973 HIT family protein YP_003157973.1 KEGG: dde:Dde_1974 hypothetical protein YP_003157974.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: dde:Dde_0358 NAD-dependent epimerase/dehydratase family protein YP_003157975.1 KEGG: dvl:Dvul_1436 tetratricopeptide domain- containing protein YP_003157976.1 KEGG: dde:Dde_1976 DNA mismatch repair protein; TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; MutS III domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein YP_003157977.1 KEGG: dde:Dde_1977 lipoprotein YP_003157978.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dvu:DVU1647 diaminopimelate decarboxylase YP_003157979.1 PFAM: permease; KEGG: cli:Clim_0132 permease YP_003157980.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: dge:Dgeo_0100 ArsR family transcriptional regulator YP_003157981.1 KEGG: shw:Sputw3181_0268 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein YP_003157982.1 PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: dvl:Dvul_0479 AraC family transcriptional regulator YP_003157983.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dvu:DVU2887 hypothetical protein YP_003157984.1 PFAM: protein of unknown function DUF86; KEGG: chy:CHY_2535 hypothetical protein YP_003157985.1 PFAM: DNA polymerase beta domain protein region; KEGG: gme:Gmet_0479 DNA polymerase, beta-like region YP_003157986.1 KEGG: ote:Oter_0186 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_003157987.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: rru:Rru_A1804 N-acetyltransferase YP_003157988.1 TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_3207 acetyl-coenzyme A synthetase YP_003157989.1 PFAM: regulatory protein TetR; KEGG: mag:amb2971 transcriptional regulator YP_003157990.1 PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; KEGG: sun:SUN_1164 2-acyl-glycerophospho- ethanolamine acyltransferase YP_003157991.1 KEGG: dvu:DVU0136 hypothetical protein YP_003157992.1 PFAM: PP-loop domain protein; KEGG: dde:Dde_3611 hypothetical protein YP_003157993.1 KEGG: gbm:Gbem_2715 response regulator receiver modulated diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver YP_003157994.1 KEGG: dvl:Dvul_1688 HesB/YadR/YfhF-family protein YP_003157995.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: sfu:Sfum_2600 transposase IS116/IS110/IS902 family protein YP_003157998.1 KEGG: tye:THEYE_A0842 hypothetical protein YP_003157999.1 PFAM: transposase IS3/IS911 family protein; KEGG: dvu:DVU0556 ISDvu3, transposase OrfA YP_003158000.1 PFAM: Integrase catalytic region; KEGG: bpl:BURPS1106A_3886 transposase B YP_003158001.1 PFAM: integrase family protein; KEGG: dde:Dde_0620 hypothetical protein YP_003158002.1 KEGG: dol:Dole_2379 hypothetical protein YP_003158003.1 PFAM: PfkB domain protein; KEGG: sde:Sde_0819 cell division protein FtsA YP_003158004.1 PFAM: protein of unknown function UPF0118; KEGG: aeh:Mlg_2482 hypothetical protein YP_003158005.1 PFAM: glutamine synthetase catalytic region; KEGG: dvl:Dvul_1805 glutamine synthetase, catalytic region YP_003158006.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: dde:Dde_3084 signal transduction protein YP_003158007.1 KEGG: dde:Dde_3088 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003158008.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: bav:BAV1076 peptide methionine sulfoxide reductase YP_003158009.1 KEGG: ttj:TTHA0212 hypothetical protein YP_003158010.1 PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: dde:Dde_0194 hypothetical protein YP_003158011.1 TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; KEGG: dvl:Dvul_1214 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_003158012.1 TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase; KEGG: dvl:Dvul_1215 gamma-glutamyl phosphate reductase YP_003158013.1 KEGG: dvu:DVU1952 hypothetical protein YP_003158014.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; GAF domain protein; KEGG: dde:Dde_1635 Fis family transcriptional regulator YP_003158015.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dde:Dde_2762 histidine kinase YP_003158016.1 KEGG: dde:Dde_3465 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-3 domain protein; SMART: response regulator receiver; PAS domain containing protein YP_003158017.1 PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: dde:Dde_1315 UTP--glucose-1-phosphate uridylyltransferase YP_003158018.1 KEGG: pca:Pcar_0911 sensory box histidine kinase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003158019.1 PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dps:DP0962 methyl-accepting chemotaxis protein YP_003158020.1 PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dps:DP0963 methyl-accepting chemotaxis protein YP_003158021.1 KEGG: aba:Acid345_2074 hypothetical protein YP_003158022.1 KEGG: sfu:Sfum_2209 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; NMT1/THI5 like domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_003158023.1 PFAM: protein of unknown function DUF1456; KEGG: gur:Gura_3447 hypothetical protein YP_003158024.1 KEGG: cja:CJA_2751 nucleic acid binding protein YP_003158025.1 KEGG: ilo:IL0789 hypothetical protein YP_003158026.1 KEGG: bch:Bcen2424_6821 lipoprotein YP_003158027.1 KEGG: dde:Dde_3401 hypothetical protein YP_003158028.1 PFAM: Ankyrin; SMART: Ankyrin; KEGG: sdn:Sden_3488 hypothetical protein YP_003158030.1 KEGG: sdn:Sden_3488 hypothetical protein YP_003158037.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: filamentous haemagglutinin domain protein; Haemagluttinin repeat-containing protein; KEGG: bph:Bphy_5732 filamentous haemagglutinin outer membrane protein YP_003158038.1 PFAM: Polypeptide-transport-associated domain protein ShlB-type; Hemolysin activator HlyB domain protein; KEGG: pfl:PFL_1551 HlyB family hemolysin activator protein YP_003158039.1 PFAM: Protein of unknown function CGGC region; KEGG: tye:THEYE_A1863 hypothetical protein YP_003158040.1 PFAM: UspA domain protein; KEGG: dde:Dde_0589 universal stress protein YP_003158041.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sfu:Sfum_3887 RNA polymerase, sigma-24 subunit, ECF subfamily YP_003158042.1 PFAM: glycoside hydrolase family 13 domain protein; KEGG: sfu:Sfum_3886 glycoside hydrolase, family 13 domain protein YP_003158043.1 KEGG: sfu:Sfum_3885 hypothetical protein YP_003158044.1 SMART: Tetratricopeptide domain protein; KEGG: dps:DP0368 hypothetical protein YP_003158045.1 KEGG: dps:DP0367 hypothetical protein YP_003158046.1 PFAM: UbiA prenyltransferase; KEGG: dde:Dde_1827 protoheme IX farnesyltransferase YP_003158047.1 TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; KEGG: dde:Dde_1826 cytochrome c oxidase, subunit II YP_003158048.1 TIGRFAM: caa(3)-type oxidase, subunit IV; KEGG: dde:Dde_1825 Caa(3)-type oxidase, subunit IV YP_003158049.1 PFAM: cytochrome c oxidase subunit III; KEGG: dde:Dde_1824 cytochrome c oxidase, subunit III YP_003158050.1 KEGG: dvu:DVU1815 cytochrome c oxidase, subunit I, TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_003158051.1 KEGG: dde:Dde_1822 uncharacterized protein SCO1/SenC/PrrC YP_003158052.1 KEGG: dde:Dde_1821 cytochrome c-553 YP_003158053.1 KEGG: pen:PSEEN2977 quinohemoprotein amine dehydrogenase 60 kDa subunit YP_003158054.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gsu:GSU0841 sigma-54 dependent DNA-binding response regulator YP_003158055.1 KEGG: tye:THEYE_A1270 hypothetical protein YP_003158056.1 TIGRFAM: UDP-N-acetylglucosamine 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: dvu:DVU3258 UDP-N-acetylglucosamine 1- carboxyvinyltransferase YP_003158057.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dvl:Dvul_0299 glyoxalase/bleomycin resistance protein/dioxygenase YP_003158058.1 PFAM: heat shock protein Hsp90; ATP-binding region ATPase domain protein; KEGG: dde:Dde_1147 heat shock protein 90 YP_003158059.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: nph:NP0006A ABC-type transport system ATP- binding protein YP_003158060.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dde:Dde_0339 OMPP1/FadL/TodX family outer membrane protein YP_003158061.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: mem:Memar_1210 nitrite and sulphite reductase 4Fe-4S region YP_003158062.1 PFAM: Phosphoglycerate mutase; KEGG: sfu:Sfum_1317 metal dependent phosphohydrolase YP_003158063.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: gur:Gura_1006 metal dependent phosphohydrolase YP_003158064.1 PFAM: protein of unknown function DUF182; KEGG: dps:DP0263 hypothetical protein YP_003158065.1 KEGG: gme:Gmet_1800 coenzyme F390 synthetase-like YP_003158066.1 PFAM: Radical SAM domain protein; KEGG: pca:Pcar_0225 Fe-S oxidoreductase YP_003158067.1 KEGG: ppd:Ppro_1533 hypothetical protein YP_003158068.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pca:Pcar_0223 SAM-dependent methyltransferase YP_003158069.1 KEGG: dvl:Dvul_1576 hypothetical protein YP_003158070.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dps:DP0269 Fe-S oxidoreductase YP_003158071.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: dps:DP0270 aldehyde oxidoreductase YP_003158072.1 PFAM: molybdopterin binding domain; KEGG: dvl:Dvul_1573 molybdopterin binding domain- containing protein YP_003158073.1 KEGG: dsy:DSY0880 hypothetical protein YP_003158074.1 PFAM: regulatory protein LysR; KEGG: sfu:Sfum_0033 transcriptional regulator, ModE family YP_003158075.1 PFAM: formylmethanofuran dehydrogenase subunit E region; molybdopterin binding domain; KEGG: dvl:Dvul_2793 molybdopterin binding domain- containing protein YP_003158076.1 KEGG: dde:Dde_0714 transposase YP_003158077.1 KEGG: dde:Dde_3515 formate dehydrogenase formation protein FdhE YP_003158078.1 KEGG: dde:Dde_3514 formate dehydrogenase beta subunit YP_003158079.1 KEGG: dvu:DVU2812 formate dehydrogenase, alpha subunit, selenocysteine-containing; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; molydopterin dinucleotide- binding region YP_003158080.1 PFAM: Radical SAM domain protein; cobalamin B12- binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tdn:Suden_0042 radical SAM family protein YP_003158081.1 PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc; KEGG: bpy:Bphyt_4379 PilT protein domain protein YP_003158082.1 TIGRFAM: prevent-host-death family protein; KEGG: bpy:Bphyt_4380 prevent-host-death family protein YP_003158083.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: pca:Pcar_1344 hypothetical protein YP_003158084.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rha:RHA1_ro00657 hypothetical protein YP_003158085.1 PFAM: KilA domain protein; KEGG: gur:Gura_0556 hypothetical protein YP_003158086.1 KEGG: bbk:BARBAKC583_0276 addiction module antidote protein YP_003158087.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sml:Smlt2765 ABC molybdenum transport-related membrane protein YP_003158088.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dvl:Dvul_2789 ABC transporter related YP_003158089.1 PFAM: TOBE domain protein; integrase family protein; KEGG: dvl:Dvul_2790 TOBE domain-containing protein YP_003158090.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: dvu:DVU0177 molybdenum ABC transporter, periplasmic molybdenum-binding protein YP_003158091.1 KEGG: dvl:Dvul_0634 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003158092.1 KEGG: pca:Pcar_2569 hypothetical protein YP_003158093.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dps:DP0542 1,3-propanediol dehydrogenase YP_003158094.1 KEGG: dvu:DVU2827 sigma-54 dependent transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATPase AAA; PAS domain containing protein YP_003158095.1 KEGG: dvl:Dvul_0490 glycyl-radical activating family protein; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein YP_003158096.1 PFAM: pyruvate formate-lyase PFL; formate C- acetyltransferase glycine radical; KEGG: dde:Dde_1273 formate C-acetyltransferase YP_003158097.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dde:Dde_1275 TRAP dicarboxylate transporter, DctP subunit YP_003158098.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dde:Dde_1274 TRAP dicarboxylate transporter- DctM subunit YP_003158099.1 PFAM: amidohydrolase 2; KEGG: dvl:Dvul_0495 amidohydrolase 2 YP_003158100.1 PFAM: protein of unknown function DUF81; KEGG: dps:DP1701 hypothetical protein YP_003158101.1 PFAM: purine or other phosphorylase family 1; KEGG: gur:Gura_0536 purine phosphorylase family 1 YP_003158104.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: ppd:Ppro_3481 LuxR family transcriptional regulator YP_003158105.1 KEGG: reh:H16_A0780 signal transduction histidine kinase containing PAS/PAC sensor domain; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein YP_003158106.1 KEGG: net:Neut_2081 GreA/GreB family elongation factor YP_003158107.1 PFAM: Methicillin resistance protein; KEGG: dvu:DVU2294 femAB family protein YP_003158108.1 KEGG: dvl:Dvul_1097 hypothetical protein YP_003158109.1 KEGG: mca:MCA2285 hypothetical protein YP_003158110.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: cti:RALTA_A2260 conserved hypothetical protein; stomatin-like transmembrane protein YP_003158111.1 PFAM: protein of unknown function DUF107; KEGG: aeh:Mlg_1989 nodulation efficiency protein NfeD YP_003158113.1 KEGG: dvl:Dvul_1811 hypothetical protein YP_003158114.1 PFAM: glucose inhibited division protein; KEGG: dvl:Dvul_1812 glucose inhibited division protein YP_003158115.1 PFAM: Acyl transferase; KEGG: dvl:Dvul_1813 malonyl CoA-ACP transacylase YP_003158116.1 KEGG: dvu:DVU1248 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase YP_003158117.1 PFAM: Sporulation domain protein; KEGG: dvl:Dvul_1815 sporulation domain-containing protein YP_003158118.1 TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mgm:Mmc1_3564 agmatinase YP_003158119.1 PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: sek:SSPA2629 RNA methyltransferase YP_003158120.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_1725 long-chain-fatty-acid--CoA ligase YP_003158121.1 PFAM: peptidase M48 Ste24p; KEGG: gme:Gmet_1156 HtpX-2 peptidase YP_003158122.1 KEGG: pin:Ping_1876 hypothetical protein YP_003158123.1 PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal body FlaE domain protein; KEGG: dvl:Dvul_1636 hypothetical protein YP_003158124.1 KEGG: dvl:Dvul_0561 hypothetical protein YP_003158125.1 KEGG: dvl:Dvul_1427 UDP kinase; TIGRFAM: UDP kinase; PFAM: Bacitracin resistance protein BacA YP_003158126.1 PFAM: adenylate cyclase; KEGG: dvu:DVU1600 adenylate cyclase YP_003158127.1 PFAM: peptidase M29 aminopeptidase II; KEGG: dol:Dole_2013 peptidase M29 aminopeptidase II YP_003158128.1 PFAM: iron dependent repressor; regulatory protein MarR; SMART: iron dependent repressor; KEGG: sfu:Sfum_3768 iron (metal) dependent repressor, DtxR family YP_003158129.1 PFAM: FeoA family protein; KEGG: dvl:Dvul_0674 FeoA family protein YP_003158130.1 TIGRFAM: ferrous iron transport protein B; PFAM: GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; KEGG: dvl:Dvul_0675 ferrous iron transport protein B YP_003158131.1 PFAM: FeoA family protein; KEGG: dth:DICTH_1459 hypothetical protein YP_003158132.1 PFAM: glycosyl transferase family 2; KEGG: sat:SYN_00376 glycosyltransferase involved in cell wall biogenesis YP_003158133.1 KEGG: sat:SYN_00378 cytoplasmic protein YP_003158134.1 PFAM: aminoglycoside phosphotransferase; KEGG: dvl:Dvul_2688 aminoglycoside phosphotransferase YP_003158135.1 PFAM: translation initiation factor SUI1; KEGG: hch:HCH_00188 translation initiation factor SUI1 YP_003158136.1 KEGG: mag:amb1956 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein; ATP- binding region ATPase domain protein YP_003158137.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: dvl:Dvul_0144 transcription elongation factor GreA YP_003158138.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_0399 acetolactate synthase 1 regulatory subunit YP_003158139.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; KEGG: dvl:Dvul_2624 acetolactate synthase catalytic subunit YP_003158140.1 KEGG: dde:Dde_1349 hypothetical protein YP_003158141.1 PFAM: FAD dependent oxidoreductase; HI0933 family protein; KEGG: dde:Dde_2466 hypothetical protein YP_003158142.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rce:RC1_2762 HAD-superfamily hydrolase, subfamily IA YP_003158143.1 PFAM: Ion transport 2 domain protein ; TrkA-C domain protein; TrkA-N domain protein; KEGG: dol:Dole_0161 TrkA domain-containing protein YP_003158144.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: ote:Oter_0253 iron-containing alcohol dehydrogenase YP_003158145.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: dvu:DVU0662 serine O-acetyltransferase YP_003158146.1 TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: mbb:BCG_2356 cysteine synthase A cysK1 YP_003158147.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: ppd:Ppro_1181 histone family protein DNA- binding protein YP_003158148.1 PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamine amidotransferase class-II; KEGG: gsu:GSU3450 glutamate synthase-related protein YP_003158150.1 KEGG: dvl:Dvul_1570 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; ATP-binding region ATPase domain protein YP_003158151.1 PFAM: protein of unknown function zinc metallopeptidase KEGG: esi:exig_0173 protein of unknown function zinc metallopeptidase YP_003158152.1 KEGG: rpc:RPC_4341 hypothetical protein YP_003158153.1 TIGRFAM: prevent-host-death family protein; KEGG: gur:Gura_0630 prevent-host-death family protein YP_003158154.1 KEGG: dol:Dole_0924 nucleic acid binding protein YP_003158155.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: paa:Paes_1736 filamentation induced by cAMP protein Fic YP_003158156.1 KEGG: rpc:RPC_3546 hypothetical protein YP_003158157.1 PFAM: GCN5-related N-acetyltransferase; protein of unknown function DUF437; KEGG: pfu:PF0470 hypothetical protein YP_003158158.1 KEGG: slo:Shew_3145 hypothetical protein YP_003158160.1 KEGG: sbn:Sbal195_2018 hypothetical protein YP_003158161.1 KEGG: hch:HCH_03786 hypothetical protein YP_003158162.1 KEGG: shm:Shewmr7_3175 hypothetical protein YP_003158163.1 TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; KEGG: gbm:Gbem_1476 nucleotidyltransferase substrate binding protein, HI0074 family YP_003158164.1 PFAM: DNA polymerase beta domain protein region; KEGG: gbm:Gbem_1475 DNA polymerase beta domain protein region YP_003158165.1 KEGG: Hypothetical protein CBG09238 YP_003158167.1 KEGG: hypothetical protein YP_003158169.1 KEGG: gbm:Gbem_1158 hypothetical protein YP_003158171.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: nha:Nham_3536 Sel1 YP_003158172.1 PFAM: peptidase S41; SMART: peptidase S41; KEGG: ace:Acel_1729 carboxyl-terminal protease YP_003158173.1 KEGG: hch:HCH_02790 hypothetical protein YP_003158174.1 PFAM: 17 kDa surface antigen; KEGG: hch:HCH_02788 hypothetical protein YP_003158175.1 KEGG: ent:Ent638_4233 hypothetical protein YP_003158176.1 PFAM: protein of unknown function DUF214; KEGG: bav:BAV0796 ABC transporter, transmembrane protein YP_003158177.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: pau:PA14_00860 ATP-binding component of ABC transporter YP_003158178.1 PFAM: von Willebrand factor type A; KEGG: bav:BAV0798 exported protein YP_003158179.1 PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0411 hypothetical protein YP_003158180.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_0412 ATPase YP_003158181.1 PFAM: lipolytic protein G-D-S-L family; KEGG: dde:Dde_0413 acyl-CoA thioesterase precursor YP_003158182.1 KEGG: amr:AM1_5410 hypothetical protein YP_003158183.1 PFAM: pseudouridine synthase; KEGG: hch:HCH_04661 pseudouridylate synthases, 23S RNA-specific YP_003158184.1 PFAM: DoxX family protein; KEGG: sat:SYN_03817 hypothetical protein YP_003158185.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: dps:DP1017 hypothetical protein YP_003158186.1 TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: dvl:Dvul_1419 outer membrane lipoprotein carrier protein LolA YP_003158187.1 PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1703 hypothetical protein YP_003158188.1 PFAM: type IV pilus assembly PilZ YP_003158189.1 KEGG: bca:BCE_1668 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase YP_003158190.1 KEGG: bba:Bd3565 aspartate alpha-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase YP_003158191.1 KEGG: dvl:Dvul_0787 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase YP_003158193.1 KEGG: hha:Hhal_2262 hypothetical protein YP_003158194.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_2477 ATPase YP_003158195.1 PFAM: peptidase membrane zinc metallopeptidase KEGG: aeh:Mlg_1818 peptidase, membrane zinc metallopeptidase YP_003158196.1 PFAM: nitroreductase; KEGG: cpc:Cpar_0843 hypothetical protein YP_003158197.1 PFAM: protein of unknown function UPF0118; KEGG: bfr:BF0658 permease YP_003158198.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dps:DP1333 long-chain-fatty-acid--CoA ligase YP_003158199.1 PFAM: O-antigen polymerase; KEGG: sfu:Sfum_3326 O-antigen polymerase YP_003158200.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: hypothetical protein; K09504 DnaJ homolog, subfamily A, member 3 YP_003158201.1 KEGG: sfu:Sfum_3322 hypothetical protein YP_003158202.1 KEGG: sfu:Sfum_3321 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein YP_003158203.1 PFAM: polysaccharide export protein; KEGG: sfu:Sfum_3319 polysaccharide export protein YP_003158204.1 KEGG: sfu:Sfum_3320 hypothetical protein YP_003158205.1 PFAM: PHP domain protein; KEGG: sfu:Sfum_1979 PHP C-terminal domain protein YP_003158206.1 TIGRFAM: UDP-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: tcx:Tcr_1675 UDP-phosphate galactosephosphotransferase YP_003158207.1 KEGG: dge:Dgeo_2502 O-antigen and teichoic acid- like export protein YP_003158208.1 PFAM: aminoglycoside phosphotransferase; KEGG: dge:Dgeo_2504 hypothetical protein YP_003158209.1 PFAM: glycosyl transferase group 1; KEGG: dge:Dgeo_2505 glycosyl transferase, group 1 YP_003158210.1 KEGG: dge:Dgeo_2667 O-antigen polymerase YP_003158211.1 PFAM: glycosyl transferase group 1; KEGG: dge:Dgeo_2669 glycosyl transferase, group 1 YP_003158212.1 PFAM: Peptidase M23; KEGG: swi:Swit_4002 peptidase M23B YP_003158213.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dde:Dde_2214 TRAP dicarboxylate transporter- DctM subunit YP_003158214.1 KEGG: dde:Dde_2215 tripartite ATP-independent periplasmic transporters, DctQ component YP_003158215.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dde:Dde_2216 extracellular solute-binding protein YP_003158216.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_2217 TetR family transcriptional regulator YP_003158217.1 PFAM: anaerobic cobalt chelatase; KEGG: dvl:Dvul_2310 anaerobic cobalt chelatase YP_003158218.1 PFAM: transport system permease protein; KEGG: dde:Dde_3104 iron compound ABC transporter, permease protein YP_003158219.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dvu:DVU0648 iron compound ABC transporter, ATP-binding protein YP_003158220.1 PFAM: periplasmic binding protein; KEGG: dde:Dde_3106 iron compound ABC transporter, periplasmic iron compount-binding protein YP_003158221.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_3107 cobalt-factor II C20- methyltransferase / precorrin-2 C20-methyltransferase YP_003158222.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; Cobyrinic acid ac-diamide synthase; KEGG: gbm:Gbem_3810 cobyrinic acid a,c-diamide synthase YP_003158223.1 TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: dde:Dde_0804 cobalamin biosynthesis protein CbiD YP_003158224.1 KEGG: dde:Dde_0803 precorrin-6Y C5,15- methyltransferase (decarboxylating); TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15- methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003158225.1 KEGG: dvu:DVU2748 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003158226.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dvu:DVU3170 precorrin-3b C17- methyltransferase YP_003158227.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1835 glycosyl transferase, group 1 family protein YP_003158228.1 KEGG: dde:Dde_1834 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003158229.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: azo:azo0921 TRAP-type C4- dicarboxylate transport system, large permease YP_003158230.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dsy:DSY4255 hypothetical protein YP_003158231.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ret:RHE_PC00213 probable C4-dicarboxylate transport system, substrate-binding protein YP_003158232.1 PFAM: FAD linked oxidase domain protein; KEGG: dvl:Dvul_2725 D-lactate dehydrogenase (cytochrome) YP_003158233.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: cts:Ctha_1275 cupin 2 conserved barrel domain protein YP_003158235.1 PFAM: protein of unknown function DUF162; KEGG: dde:Dde_3244 hypothetical protein YP_003158236.1 PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dvu:DVU3033 iron-sulfur cluster-binding protein YP_003158237.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dde:Dde_1301 thiol:disulfide interchange protein-like YP_003158238.1 PFAM: excinuclease ABC C subunit domain protein; KEGG: maq:Maqu_2824 excinuclease ABC subunit C YP_003158239.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: ilo:IL2439 hemolysin III-like protein YP_003158240.1 PFAM: protein of unknown function DUF88; KEGG: aav:Aave_2514 protein of unknown function DUF88 YP_003158241.1 PFAM: peptidase M24; creatinase; KEGG: dvu:DVU1000 M24 family peptidase YP_003158242.1 PFAM: Radical SAM domain protein; KEGG: dvu:DVU2757 radical SAM domain-containing protein YP_003158243.1 PFAM: protein of unknown function UPF0153; KEGG: dvu:DVU1002 hypothetical protein YP_003158244.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: dde:Dde_1302 heat shock protein DnaJ-like YP_003158245.1 TIGRFAM: small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: dde:Dde_2063 elongation factor G YP_003158247.1 KEGG: dde:Dde_3222 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_003158248.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: dvl:Dvul_0389 3-isopropylmalate dehydratase, small subunit YP_003158249.1 KEGG: dvl:Dvul_0390 3-isopropylmalate dehydratase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; homoaconitate hydratase family protein; 3- isopropylmalate dehydratase; PFAM: aconitate hydratase domain protein YP_003158250.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: dde:Dde_3218 2-isopropylmalate synthase YP_003158251.1 TIGRFAM: CDP-diacylglycerol/serine O- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dvl:Dvul_0392 CDP-diacylglycerol--serine O- phosphatidyltransferase YP_003158252.1 KEGG: dvl:Dvul_0393 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase related protein; PFAM: phosphatidylserine decarboxylase-related YP_003158253.1 KEGG: dde:Dde_2021 CgeB family protein YP_003158254.1 PFAM: glycosyl transferase family 9; KEGG: dvl:Dvul_1615 glycosyl transferase family protein YP_003158255.1 TIGRFAM: siroheme synthase; KEGG: dde:Dde_2023 precorrin-2 dehydrogenase YP_003158256.1 PFAM: cytochrome c assembly protein; KEGG: dde:Dde_2024 cytochrome c assembly protein YP_003158257.1 TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; KEGG: dvl:Dvul_1618 glutamyl-tRNA reductase YP_003158258.1 KEGG: dde:Dde_2026 hypothetical protein YP_003158259.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: dde:Dde_2027 ketose-bisphosphate aldolase, class-II YP_003158261.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvu:DVU0283 AhpF family protein/thioredoxin reductase YP_003158262.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0256 glycosyl transferase, group 1 family protein YP_003158263.1 PFAM: aminotransferase class IV; KEGG: dvl:Dvul_0329 aminotransferase, class IV YP_003158264.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; KEGG: dvl:Dvul_0328 aspartate-semialdehyde dehydrogenase YP_003158265.1 KEGG: dvl:Dvul_1992 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_003158266.1 PFAM: type II secretion system protein; KEGG: sat:SYN_01284 general secretion pathway protein F YP_003158267.1 PFAM: NUDIX hydrolase; KEGG: dde:Dde_0251 mutator MutT protein YP_003158268.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_0250 ATPase YP_003158270.1 PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_2831 glycosyl transferase family protein YP_003158271.1 KEGG: dvu:DVU0282 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein YP_003158272.1 PFAM: PGAP1 family protein; KEGG: dde:Dde_1837 acetyltransferase and hydrolase with the alpha/beta hydrolase fold-like YP_003158273.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01474 ABC-type spermidine/putrescine transport system, permease component II YP_003158274.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3888 binding-protein-dependent transport systems inner membrane component YP_003158275.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: rfr:Rfer_3223 ABC transporter related YP_003158276.1 PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_01471 spermidine/putrescine-binding periplasmic protein YP_003158277.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: dvl:Dvul_0577 PAS/PAC sensor hybrid histidine kinase YP_003158278.1 PFAM: acyltransferase 3; KEGG: swp:swp_1332 hypothetical protein YP_003158279.1 KEGG: lip:LI0507 hypothetical protein YP_003158280.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dol:Dole_1891 GCN5-related N- acetyltransferase YP_003158281.1 PFAM: protein of unknown function DUF201; KEGG: dde:Dde_3043 D-alanine-D-alanine ligase and related ATP-grasp enzyme-like YP_003158282.1 PFAM: D-alanine--D-alanine ligase domain protein; phosphoribosylglycinamide synthetase; KEGG: dde:Dde_3042 D-alanine--D-alanine ligase YP_003158283.1 KEGG: sfu:Sfum_0711 lysine 2,3-aminomutase YodO family protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_003158284.1 KEGG: sfu:Sfum_2665 heat shock protein DnaJ domain protein YP_003158285.1 KEGG: rrs:RoseRS_2557 dihydroorotase; TIGRFAM: dihydroorotase, homodimeric type; PFAM: amidohydrolase 2 YP_003158286.1 PFAM: SNARE associated Golgi protein; KEGG: gme:Gmet_0345 hypothetical protein YP_003158287.1 PFAM: dihydrouridine synthase DuS; KEGG: dde:Dde_3089 dihydrouridine synthase family protein YP_003158288.1 KEGG: dde:Dde_1828 hypothetical protein YP_003158289.1 PFAM: acriflavin resistance protein; KEGG: dol:Dole_1215 acriflavin resistance protein YP_003158290.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: hemolysin D; KEGG: smt:Smal_1636 efflux transporter, RND family, MFP subunit YP_003158291.1 KEGG: syf:Synpcc7942_1608 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-6-phosphate isomerase type II YP_003158292.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: dde:Dde_3248 rhodanese-like protein YP_003158293.1 PFAM: protein of unknown function DUF362; KEGG: dde:Dde_3247 hypothetical protein YP_003158294.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; KEGG: dvl:Dvul_0310 (NiFe) hydrogenase maturation protein HypF YP_003158295.1 KEGG: vpa:VP2152 protease IV; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49 YP_003158296.1 PFAM: FAD linked oxidase domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_0312 oxidoreductase YP_003158297.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: dde:Dde_0314 Holliday junction resolvase YqgF YP_003158298.1 PFAM: aminodeoxychorismate lyase; KEGG: dvl:Dvul_0308 aminodeoxychorismate lyase YP_003158299.1 PFAM: extracellular solute-binding protein family 5; KEGG: dde:Dde_0275 oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein YP_003158300.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0274 oligopeptide/dipeptide ABC transporter, permease protein YP_003158301.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP0149 dipeptide ABC transporter, permease protein (DppC) YP_003158302.1 KEGG: dvl:Dvul_2802 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003158303.1 KEGG: dvl:Dvul_2803 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003158304.1 PFAM: thioesterase superfamily protein; KEGG: dde:Dde_0336 thioesterase family protein YP_003158305.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: scl:sce7715 hypothetical protein YP_003158306.1 PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dps:DP0963 methyl-accepting chemotaxis protein YP_003158307.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dvu:DVU1260 outer membrane protein P1 YP_003158308.1 PFAM: regulatory protein TetR; KEGG: dvl:Dvul_1398 TetR family transcriptional regulator YP_003158310.1 PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1949 permease YP_003158311.1 PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1948 permease YP_003158312.1 KEGG: sfu:Sfum_0324 hypothetical protein YP_003158313.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: dvu:DVU3257 DNA internalization-related competence protein ComEC/Rec2 YP_003158314.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein YP_003158315.1 KEGG: sfu:Sfum_3176 hypothetical protein YP_003158316.1 KEGG: dde:Dde_1443 hypothetical protein YP_003158317.1 PFAM: SufBD protein; KEGG: dvl:Dvul_1973 SufBD protein YP_003158318.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_1445 ATPase YP_003158319.1 PFAM: Rhomboid family protein; KEGG: dde:Dde_1446 rhomboid family protein YP_003158320.1 KEGG: dvl:Dvul_1969 RluA family pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; dephospho-CoA kinase; PFAM: pseudouridine synthase; Dephospho-CoA kinase; RNA-binding S4 domain protein YP_003158321.1 PFAM: OmpA/MotB domain protein; KEGG: sat:SYN_00198 outer membrane porin protein YP_003158322.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: sfu:Sfum_0738 DNA-directed DNA polymerase YP_003158323.1 PFAM: amidinotransferase; KEGG: bmj:BMULJ_03873 N-dimethylarginine dimethylaminohydrolase YP_003158324.1 KEGG: dvl:Dvul_2023 hypothetical protein YP_003158325.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dvl:Dvul_2022 extracellular solute-binding protein YP_003158326.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_2021 polar amino acid ABC transporter, inner membrane subunit YP_003158327.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_1387 ATPase YP_003158329.1 KEGG: btr:PlasmidBtr_0017 hypothetical protein YP_003158330.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_2104 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003158331.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0301 hypothetical protein YP_003158332.1 KEGG: sus:Acid_1423 general secretion pathway protein-related protein YP_003158333.1 KEGG: dvl:Dvul_0571 phenylacetate--CoA ligase YP_003158334.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: dvu:DVU0959 replicative DNA helicase YP_003158335.1 TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9; KEGG: dde:Dde_1410 50S ribosomal protein L9 YP_003158336.1 TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; KEGG: dvl:Dvul_2029 30S ribosomal protein S18 YP_003158337.1 TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; KEGG: dde:Dde_1412 30S ribosomal protein S6 YP_003158338.1 KEGG: dps:DP1925 Ntr family two-component system sensory/regulatory protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_003158339.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: sfu:Sfum_2955 two component, sigma54 specific, transcriptional regulator, fis family YP_003158340.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: dde:Dde_3003 two component Fis family transcriptional regulator YP_003158341.1 KEGG: dde:Dde_3000 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; histidine kinase A domain protein YP_003158342.1 KEGG: dde:Dde_2999 hypothetical protein YP_003158343.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: dde:Dde_2334 succinyl-CoA synthetase (ADP- forming) alpha subunit / succinyl-CoA synthetase (ADP- forming) beta subunit YP_003158344.1 PFAM: protein of unknown function DUF1121; KEGG: sfu:Sfum_0236 protein of unknown function DUF1121 YP_003158345.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: mar:MAE_32070 cytidine deaminase YP_003158346.1 PFAM: Amidase; KEGG: rha:RHA1_ro02850 indoleacetamide hydrolase YP_003158347.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4775 iron(III)-transport system permease YP_003158348.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: sth:STH2752 ABC transporter ATP-binding protein YP_003158349.1 PFAM: extracellular solute-binding protein family 1; KEGG: tfu:Tfu_1309 transporter YP_003158350.1 KEGG: dde:Dde_2042 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase YP_003158351.1 PFAM: protein of unknown function DUF1063; KEGG: dps:DP0591 hypothetical protein YP_003158353.1 PFAM: extracellular solute-binding protein family 1; KEGG: dvl:Dvul_2867 extracellular solute-binding protein YP_003158354.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvu:DVU0096 spermidine/putrescine ABC transporter membrane protein YP_003158355.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpe:KPK_3421 spermidine/putrescine ABC transporter, permease protein PotB YP_003158356.1 KEGG: lip:LI0829 putrescine/spermidine ABC transporter ATPase protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: ATPase AAA YP_003158357.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF- family domain protein; KEGG: lip:LI0750 hypothetical protein YP_003158358.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: sfu:Sfum_2202 CBS domain containing membrane protein YP_003158359.1 PFAM: protein of unknown function UPF0079; KEGG: dde:Dde_2047 hypothetical protein YP_003158360.1 PFAM: ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dvl:Dvul_1401 recombination factor protein RarA YP_003158361.1 KEGG: dvl:Dvul_1543 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: ATPase AAA YP_003158362.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: dde:Dde_2111 hypothetical protein YP_003158363.1 KEGG: dde:Dde_2112 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003158364.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dvl:Dvul_1546 acetyltransferase YP_003158365.1 PFAM: homocysteine S-methyltransferase; cobalamin B12-binding domain protein; Methionine synthase B12- binding module cap domain protein; dihydropteroate synthase DHPS; KEGG: dde:Dde_2115 methionine synthase (B12- dependent) YP_003158366.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: dde:Dde_2116 sigma 70 family protein YP_003158367.1 KEGG: sfu:Sfum_3247 hypothetical protein YP_003158368.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2117 TPR repeat-containing protein YP_003158369.1 KEGG: dvl:Dvul_1551 hypothetical protein YP_003158370.1 KEGG: dde:Dde_2119 hypothetical protein YP_003158371.1 TIGRFAM: ribose 5-phosphate isomerase B; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: dde:Dde_2120 ribose-5-phosphate isomerase YP_003158372.1 TIGRFAM: transketolase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: esi:exig_1098 transketolase YP_003158373.1 TIGRFAM: fructose-1,6-bisphosphatase, class II; PFAM: GlpX family protein; KEGG: dde:Dde_1796 fructose 1,6-bisphosphatase II YP_003158374.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: sat:SYN_00355 hypothetical protein YP_003158375.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: sat:SYN_00354 hypothetical protein YP_003158376.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; KEGG: pla:Plav_3348 NAD-dependent epimerase/dehydratase YP_003158377.1 PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: fre:Franean1_0789 dTDP-4-dehydrorhamnose 3,5- epimerase YP_003158378.1 PFAM: C-methyltransferase; Methyltransferase domain protein; Methyltransferase type 12; KEGG: rce:RC1_3778 methyltransferase YP_003158379.1 TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: rce:RC1_3779 CDP-glucose 4,6-dehydratase YP_003158380.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: ppw:PputW619_3719 glucose-1-phosphate cytidylyltransferase YP_003158381.1 PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: pzu:PHZ_c0499 TPR domain protein YP_003158382.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: vpa:VP1634 agglutination protein YP_003158383.1 KEGG: reu:Reut_B4069 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Diverse 7TM receptor transmembrane region; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_003158384.1 PFAM: Hemolysin-type calcium-binding region; KEGG: cli:Clim_1874 hemolysin-type calcium-binding region YP_003158385.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: ppr:PBPRB0583 agglutination protein YP_003158386.1 PFAM: Hemolysin-type calcium-binding region; KEGG: cli:Clim_1874 hemolysin-type calcium-binding region YP_003158388.1 KEGG: bac:BamMC406_6076 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: ATPase AAA YP_003158389.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: hemolysin D; KEGG: dde:Dde_1419 type I secretion membrane fusion protein, HlyD YP_003158390.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: dde:Dde_0977 LuxR family transcriptional regulator YP_003158391.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: dde:Dde_0977 LuxR family transcriptional regulator YP_003158392.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: mem:Memar_0358 pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_003158393.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: dvl:Dvul_0567 pyruvate, water dikinase YP_003158394.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pmy:Pmen_0475 citrate transporter YP_003158395.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: amt:Amet_3467 choline/carnitine/betaine transporter YP_003158396.1 PFAM: protein of unknown function UPF0066; KEGG: mla:Mlab_0337 hypothetical protein YP_003158397.1 KEGG: mfa:Mfla_1690 hypothetical protein YP_003158398.1 KEGG: cau:Caur_2859 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein YP_003158399.1 PFAM: Lytic transglycosylase catalytic; KEGG: pmy:Pmen_1575 lytic transglycosylase, catalytic YP_003158400.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: gsu:GSU0678 ABC transporter, ATP-binding protein YP_003158401.1 PFAM: protein of unknown function DUF214; KEGG: gur:Gura_0895 hypothetical protein YP_003158402.1 KEGG: gsu:GSU0676 lipoprotein YP_003158404.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1288 TPR repeat-containing protein YP_003158405.1 KEGG: sfu:Sfum_2640 hypothetical protein YP_003158406.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: swd:Swoo_3859 prolipoprotein diacylglyceryl transferase YP_003158407.1 KEGG: dps:DP2951 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; PAS domain containing protein YP_003158408.1 PFAM: protein of unknown function DUF81; KEGG: nis:NIS_0083 hypothetical protein YP_003158409.1 SMART: Rhodanese domain protein; KEGG: nis:NIS_0082 hypothetical protein YP_003158410.1 TIGRFAM: redox-active disulfide protein 2; KEGG: pca:Pcar_0185 thioredoxin YP_003158411.1 PFAM: permease; KEGG: dps:DP0945 hypothetical protein YP_003158412.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: dps:DP0944 ArsR-family transcription regulator YP_003158413.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: dde:Dde_2776 ArsR family transcriptional regulator YP_003158414.1 TIGRFAM: redox-active disulfide protein 2; KEGG: dde:Dde_2778 redox-active disulfide protein 2 YP_003158415.1 PFAM: Thioredoxin domain; KEGG: sfu:Sfum_3604 thioredoxin domain YP_003158416.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dde:Dde_2782 hypothetical protein YP_003158417.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dsy:DSY4672 hypothetical protein YP_003158418.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: pca:Pcar_1772 protein-tyrosine-phosphatase YP_003158419.1 KEGG: drm:Dred_2722 hypothetical protein YP_003158420.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sfu:Sfum_3923 outer membrane efflux protein YP_003158421.1 PFAM: acriflavin resistance protein; KEGG: sus:Acid_5798 acriflavin resistance protein YP_003158422.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: hemolysin D; KEGG: dde:Dde_0671 hemolysin D YP_003158423.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dde:Dde_1077 methyl-accepting chemotaxis sensory transducer YP_003158424.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: gbm:Gbem_3155 chemotaxis protein CheW YP_003158425.1 TIGRFAM: hybrid cluster protein; PFAM: Prismane; KEGG: dvu:DVU2013 hydroxylamine reductase YP_003158426.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dvu:DVU2014 metallo-beta-lactamase family protein YP_003158427.1 PFAM: HPP family protein; KEGG: dps:DP1224 hypothetical protein YP_003158428.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: mca:MCA2402 CBS domain-containing protein YP_003158429.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: ppd:Ppro_3849 ABC transporter related YP_003158430.1 PFAM: protein of unknown function DUF214; KEGG: pph:Ppha_1327 protein of unknown function DUF214 YP_003158431.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: hemolysin D; KEGG: ppd:Ppro_3851 RND family efflux transporter MFP subunit YP_003158432.1 PFAM: regulatory protein TetR; KEGG: eba:ebA6247 TetR family transcriptional regulator YP_003158433.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D- component; KEGG: dde:Dde_0090 2-hydroxyglutaryl-CoA dehydratase, beta subunit-like YP_003158434.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: dde:Dde_0089 CoA enzyme activase YP_003158435.1 KEGG: dps:DP0132 hypothetical protein YP_003158436.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: psa:PST_0914 sensor histidine kinase ColS YP_003158437.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pmy:Pmen_2476 two component transcriptional regulator YP_003158438.1 PFAM: sulfatase; KEGG: pmy:Pmen_2475 sulfatase YP_003158439.1 PFAM: glycosyl transferase group 1; KEGG: dol:Dole_2052 glycosyl transferase group 1 YP_003158441.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: sfu:Sfum_2884 transcriptional regulator, ArsR family YP_003158443.1 KEGG: afe:Lferr_0194 hypothetical protein YP_003158446.1 PFAM: fatty acid hydroxylase; KEGG: dsh:Dshi_4042 fatty acid hydroxylase YP_003158447.1 KEGG: sun:SUN_0469 hypothetical protein YP_003158448.1 PFAM: protein of unknown function DUF81; KEGG: nmu:Nmul_A1650 hypothetical protein YP_003158449.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cau:Caur_0607 TrkA domain-containing protein YP_003158450.1 PFAM: Integral membrane protein TerC; KEGG: sat:SYN_01926 tellurium resistance protein YP_003158451.1 KEGG: mag:amb0529 hypothetical protein YP_003158452.1 PFAM: protein of unknown function DUF34; KEGG: dvu:DVU1456 NIF3 family protein YP_003158453.1 PFAM: protein of unknown function DUF164; KEGG: dvl:Dvul_1624 hypothetical protein YP_003158454.1 TIGRFAM: 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase; PFAM: MECDP-synthase; 4-diphosphocytidyl-2C-methyl- D-erythritol synthase; KEGG: dvu:DVU1454 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase YP_003158455.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: hmo:HM1_1355 glutamyl-tRNA synthetase YP_003158456.1 KEGG: dvu:DVU1579 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M) YP_003158457.1 PFAM: AsmA family protein; KEGG: aeh:Mlg_2694 AsmA family protein YP_003158458.1 PFAM: ApbE family lipoprotein; KEGG: dde:Dde_0587 hypotehtical protein YP_003158459.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: dde:Dde_0586 ferredoxin YP_003158460.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: dde:Dde_0585 electron transport complex, RnfABCDGE type, A subunit YP_003158461.1 TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: dvl:Dvul_0519 SoxR-reducing system protein RsxE YP_003158462.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: dvl:Dvul_0520 FMN-binding domain-containing protein YP_003158463.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: dde:Dde_0582 electron transport complex, RnfABCDGE type, D subunit YP_003158464.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0581 electron transport complex protein RnfC YP_003158465.1 KEGG: dde:Dde_0580 cytochrome c family protein YP_003158466.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: dde:Dde_1854 K+-dependent Na+/Ca+ exchanger related-protein YP_003158468.1 PFAM: protein of unknown function DUF711; KEGG: sfu:Sfum_2948 hypothetical protein YP_003158469.1 PFAM: amino acid-binding ACT domain protein; KEGG: sfu:Sfum_2949 amino acid-binding ACT domain protein YP_003158470.1 KEGG: azo:azo1269 phosphoribosylglycinamide formyltransferase 2; TIGRFAM: phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp YP_003158471.1 KEGG: pat:Patl_2850 hypothetical protein YP_003158472.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dvu:DVU1919 hydrogenase expression/formation protein YP_003158473.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2135 periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing YP_003158474.1 KEGG: dvl:Dvul_1249 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003158475.1 KEGG: pen:PSEEN5280 TonB-like protein YP_003158476.1 KEGG: aha:AHA_1230 ABC-type sugar transport system, ATPase component YP_003158477.1 KEGG: sfu:Sfum_3540 hypothetical protein YP_003158479.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dvl:Dvul_0527 GntR family transcriptional regulator YP_003158480.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: dvl:Dvul_0528 FMN-dependent alpha-hydroxy acid dehydrogenase YP_003158481.1 PFAM: type IV pilus assembly PilZ; KEGG: mxa:MXAN_3721 hypothetical protein YP_003158483.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: nca:Noca_1174 GntR family transcriptional regulator YP_003158484.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: swp:swp_2065 type II and III secretion system protein:NolW-like protein YP_003158485.1 KEGG: sat:SYN_01773 hypothetical protein YP_003158486.1 KEGG: dol:Dole_0331 pilus assembly protein PilO YP_003158487.1 PFAM: Fimbrial assembly family protein; KEGG: dps:DP0109 fimbrial assembly protein PilN YP_003158488.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: gme:Gmet_0971 type IV pilus assembly protein PilM YP_003158489.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: dde:Dde_3476 isocitrate dehydrogenase (NADP) YP_003158490.1 KEGG: dvl:Dvul_2679 chemotaxis protein Chex YP_003158491.1 PFAM: Dual specificity protein phosphatase; SMART: Dual specificity protein phosphatase; KEGG: dde:Dde_0605 protein tyrosine phosphatase / dual specificity protein phosphatase YP_003158492.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: dde:Dde_0604 pyruvate,water dikinase YP_003158493.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dde:Dde_0603 response regulator receiver domain-containing protein YP_003158494.1 KEGG: dde:Dde_0602 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003158495.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dde:Dde_0601 phosphonate-binding periplasmic protein YP_003158496.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: lbf:LBF_4072 signal transduction protein YP_003158497.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dvl:Dvul_1585 membrane protein involved in aromatic hydrocarbon degradation YP_003158498.1 KEGG: dvl:Dvul_1586 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; CI repressor; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat- containing protein YP_003158499.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_0166 TPR repeat-containing protein YP_003158500.1 PFAM: OmpA/MotB domain protein; KEGG: tye:THEYE_A0812 chemotaxis protein MotB YP_003158501.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein; KEGG: gbm:Gbem_3293 DEAD/DEAH box helicase domain protein YP_003158502.1 KEGG: nth:Nther_1911 PAS modulated sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATPase AAA; PAS domain containing protein YP_003158503.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: gur:Gura_0119 4-aminobutyrate aminotransferase YP_003158504.1 KEGG: chy:CHY_1329 aldehyde ferredoxin oxidoreductase, tungsten-containing; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase YP_003158505.1 KEGG: scl:sce9160 spermidine/putrescine transport system ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: ATPase AAA YP_003158506.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cyb:CYB_1299 spermidine/putrescine ABC transporter, permease protein YP_003158507.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cyb:CYB_2209 spermidine/putrescine ABC transporter, permease protein PotC YP_003158508.1 PFAM: extracellular solute-binding protein family 1; KEGG: cyb:CYB_0505 polyamine transporter, periplasmic polyamine-binding protein YP_003158509.1 PFAM: aminotransferase class-III; KEGG: bwe:BcerKBAB4_1277 putrescine--2-oxoglutarate aminotransferase YP_003158510.1 KEGG: kcr:Kcr_0257 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase YP_003158511.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pth:PTH_0609 Fe-S-cluster-containing hydrogenase components 2 YP_003158512.1 PFAM: 17 kDa surface antigen; KEGG: rba:RB6595 signal peptide YP_003158513.1 KEGG: dde:Dde_3006 response regulator receiver domain-containing protein YP_003158515.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein; KEGG: gur:Gura_1974 DEAD/DEAH box helicase domain- containing protein YP_003158516.1 PFAM: aminotransferase class I and II; KEGG: aau:AAur_1949 aspartate aminotransferase YP_003158517.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: amt:Amet_3141 LuxR family transcriptional regulator YP_003158518.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: hemolysin D; KEGG: dde:Dde_1419 type I secretion membrane fusion protein, HlyD YP_003158519.1 PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: response regulator receiver; KEGG: pha:PSHAa1150 response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase) YP_003158520.1 PFAM: protein of unknown function DUF1508; KEGG: sit:TM1040_2613 hypothetical protein YP_003158521.1 TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Elongation factor SelB winged helix 3; Elongation factor SelB winged helix 2; elongation factor Tu domain 2 protein; KEGG: dde:Dde_3173 selenocysteine-specific translation elongation factor SelB YP_003158522.1 PFAM: peptidase M18 aminopeptidase I; KEGG: dde:Dde_3061 aminopeptidase 1 YP_003158523.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_2749 rubredoxin YP_003158524.1 PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: dvl:Dvul_1610 30S ribosomal protein S1 YP_003158525.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: dvl:Dvul_2696 peptidylprolyl isomerase YP_003158527.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: cau:Caur_3463 cation diffusion facilitator family transporter YP_003158528.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: ppd:Ppro_1386 cupin 2 domain-containing protein YP_003158530.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_2002 TetR family transcriptional regulator YP_003158531.1 PFAM: type IV pilus assembly PilZ YP_003158532.1 PFAM: Peptidase M23; KEGG: pca:Pcar_2472 metalloendopeptidase-like membrane protein YP_003158533.1 PFAM: acyl-ACP thioesterase; KEGG: dde:Dde_1334 acyl-ACP thioesterase-like YP_003158534.1 KEGG: glo:Glov_2955 response regulator receiver modulated diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver YP_003158535.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: sus:Acid_5493 PfpI family intracellular peptidase YP_003158536.1 PFAM: response regulator receiver; CBS domain containing protein; SMART: response regulator receiver; KEGG: dol:Dole_1341 response regulator receiver protein YP_003158537.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein YP_003158538.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dol:Dole_1349 histidine kinase YP_003158539.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sfu:Sfum_0618 response regulator receiver protein YP_003158540.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0617 integral membrane sensor signal transduction histidine kinase YP_003158541.1 PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; histidine kinase HAMP region domain protein; SMART: ATPase AAA; KEGG: dvu:DVU0151 HAMP domain/sigma-54 interaction domain-containing protein YP_003158542.1 KEGG: dol:Dole_0795 CBS domain-containing protein YP_003158543.1 PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: dol:Dole_1359 anion transporter YP_003158544.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dol:Dole_1357 response regulator receiver protein YP_003158545.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dol:Dole_1356 histidine kinase YP_003158546.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_2666 pyruvate, water dikinase YP_003158547.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0649 pyruvate, water dikinase YP_003158549.1 KEGG: hypothetical protein YP_003158550.1 KEGG: dde:Dde_1811 hypothetical protein YP_003158551.1 TIGRFAM: acetylornithine deacetylase or succinyl- diaminopimelate desuccinylase; PFAM: peptidase dimerisation domain protein; peptidase M20; KEGG: dvl:Dvul_1333 succinyl-diaminopimelate desuccinylase YP_003158552.1 TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A; KEGG: dvl:Dvul_1332 tRNA uridine 5- carboxymethylaminomethyl modification enzyme GidA YP_003158553.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppr:PBPRB0782 glyoxalase/bleomycin resistance protein/dioxygenase family protein YP_003158555.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_1478 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_003158556.1 KEGG: sfu:Sfum_1479 aldehyde ferredoxin oxidoreductase; PFAM: Aldehyde ferredoxin oxidoreductase ; aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase YP_003158557.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: det:DET1456 2'-5' RNA ligase family protein YP_003158558.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: dvu:DVU0415 cytosol aminopeptidase YP_003158559.1 PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_0236 hypothetical protein YP_003158560.1 KEGG: pca:Pcar_3010 hypothetical protein YP_003158561.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: dvl:Dvul_0395 hypothetical protein YP_003158562.1 KEGG: dol:Dole_2478 hypothetical protein YP_003158563.1 PFAM: UspA domain protein; KEGG: sfu:Sfum_1042 UspA domain protein YP_003158564.1 PFAM: macrophage migration inhibitory factor family protein; 4-oxalocrotonate tautomerase; KEGG: syw:SYNW0376 ATLS1-like light-inducible protein YP_003158566.1 KEGG: cbt:CLH_0993 hypothetical protein YP_003158567.1 PFAM: manganese and iron superoxide dismutase; KEGG: sfu:Sfum_3417 manganese and iron superoxide dismutase YP_003158568.1 PFAM: protein of unknown function UPF0047; KEGG: dde:Dde_3072 hypothetical protein YP_003158569.1 KEGG: aeh:Mlg_1646 malate synthase G; TIGRFAM: malate synthase G; PFAM: malate synthase YP_003158570.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bha:BH2932 hypothetical protein YP_003158571.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: dde:Dde_3468 serine/threonine protein kinase YP_003158572.1 PFAM: metallophosphoesterase; KEGG: sfu:Sfum_2718 metallophosphoesterase YP_003158573.1 KEGG: afw:Anae109_1178 lipoprotein transmembrane YP_003158575.1 PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: mfa:Mfla_1839 transglutaminase-like protein YP_003158576.1 PFAM: protein of unknown function DUF58; KEGG: azo:azo1093 hypothetical protein YP_003158577.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: mca:MCA0468 MoxR protein YP_003158578.1 KEGG: dvl:Dvul_1525 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase YP_003158579.1 KEGG: dps:DP1006 NAD-dependent DNA ligase; PFAM: NAD-dependent DNA ligase OB-fold; NAD- dependent DNA ligase adenylation; BRCT domain protein; SMART: NAD-dependent DNA ligase ; BRCT domain protein YP_003158580.1 PFAM: TrkA-N domain protein; Ion transport 2 domain protein ; TrkA-C domain protein; KEGG: dvl:Dvul_1528 TrkA domain-containing protein YP_003158581.1 KEGG: dde:Dde_2096 excinuclease ABC subunit B; TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; type III restriction protein res subunit; SMART: DEAD-like helicases ; helicase domain protein YP_003158582.1 KEGG: dvl:Dvul_1993 hypothetical protein YP_003158583.1 KEGG: dde:Dde_2097 hypothetical protein YP_003158584.1 PFAM: protein of unknown function DUF615; KEGG: dvl:Dvul_2013 hypothetical protein YP_003158585.1 KEGG: ade:Adeh_0792 leucyl/phenylalanyl-tRNA-- protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase YP_003158586.1 KEGG: dde:Dde_2099 ATPase; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; ATPase AAA central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003158587.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: dde:Dde_2100 ATP-dependent Clp protease adaptor protein ClpS YP_003158588.1 KEGG: lpc:LPC_1502 hypothetical protein YP_003158589.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: dol:Dole_1052 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003158590.1 KEGG: dol:Dole_1025 hypothetical protein YP_003158591.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: dvl:Dvul_0955 sodium/hydrogen exchanger YP_003158592.1 PFAM: protein of unknown function DUF81; KEGG: dol:Dole_2891 hypothetical protein YP_003158593.1 KEGG: sth:STH1040 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003158594.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: dde:Dde_0793 RNA-binding region RNP-1 YP_003158596.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: cac:CAC1700 response regulator YP_003158597.1 KEGG: dvu:DVU0624 NapC/NirT cytochrome c family protein YP_003158598.1 PFAM: cytochrome c552; KEGG: dvu:DVU0625 cytochrome c nitrite reductase, catalytic subunit NfrA YP_003158599.1 KEGG: dol:Dole_2161 peroxiredoxin-like protein YP_003158600.1 KEGG: amt:Amet_1461 alkyl hydroperoxide reductase YP_003158601.1 KEGG: tbd:Tbd_2287 integral membrane protein YP_003158602.1 KEGG: dvl:Dvul_0634 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein YP_003158603.1 KEGG: gme:Gmet_2749 hypothetical protein YP_003158604.1 KEGG: gme:Gmet_2750 uroporphyrinogen decarboxylase YP_003158605.1 PFAM: cobalamin B12-binding domain protein; KEGG: gsu:GSU2387 B12-binding domain-containing protein YP_003158606.1 PFAM: basic membrane lipoprotein; KEGG: cau:Caur_3873 basic membrane lipoprotein YP_003158607.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: scl:sce3554 sugar ABC transporter ATP-binding protein YP_003158608.1 PFAM: inner-membrane translocator; KEGG: cyb:CYB_0309 carbohydrate ABC transporter permease YP_003158609.1 PFAM: inner-membrane translocator; KEGG: cau:Caur_3870 inner-membrane translocator YP_003158610.1 KEGG: ava:Ava_2710 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003158612.1 KEGG: cja:CJA_1985 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003158613.1 PFAM: 3-Oxoacyl-[ACP ACP] synthase III domain protein; chalcone and stilbene synthase domain protein; KEGG: pna:Pnap_2676 chalcone and stilbene synthases domain protein YP_003158614.1 PFAM: Methyltransferase type 12; KEGG: gbm:Gbem_1026 methyltransferase type 11 YP_003158615.1 PFAM: peptidase U32; KEGG: gbm:Gbem_1027 peptidase U32 YP_003158616.1 KEGG: rlt:Rleg2_5292 hypothetical protein YP_003158617.1 KEGG: slo:Shew_1450 cytochrome P460 YP_003158618.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dol:Dole_2102 Crp/FNR family transcriptional regulator YP_003158619.1 PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: pph:Ppha_2114 methyltransferase type 11 YP_003158620.1 PFAM: AMP-dependent synthetase and ligase; KEGG: glo:Glov_3416 AMP-dependent synthetase and ligase YP_003158621.1 PFAM: isochorismatase hydrolase; KEGG: dar:Daro_2962 isochorismatase hydrolase YP_003158622.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: gur:Gura_1198 LysR family transcriptional regulator YP_003158624.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: btk:BT9727_3168 quinone oxidoreductase (NADPH:quinone reductase) YP_003158625.1 PFAM: peptidase M48 Ste24p; KEGG: maq:Maqu_3388 peptidase M48, Ste24p YP_003158626.1 KEGG: pfo:Pfl01_1032 hypothetical protein YP_003158627.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: afw:Anae109_2754 4Fe-4S ferredoxin iron- sulfur binding domain-containing protein YP_003158628.1 PFAM: protein of unknown function DUF202; KEGG: neu:NE1885 hypothetical protein YP_003158629.1 KEGG: pth:PTH_1386 6-phosphofructokinase; TIGRFAM: phosphofructokinase; PFAM: phosphofructokinase YP_003158630.1 KEGG: pca:Pcar_2296 GGDEF domain-containing protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein YP_003158631.1 KEGG: pca:Pcar_1705 hypothetical protein YP_003158632.1 KEGG: plt:Plut_1549 O-acetylhomoserine/O- acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003158633.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; KEGG: dol:Dole_0751 methionine biosynthesis protein MetW YP_003158634.1 KEGG: dol:Dole_0752 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold YP_003158635.1 PFAM: FAD dependent oxidoreductase; KEGG: gsu:GSU2761 FAD-dependent glycerol-3- phosphate dehydrogenase subunit YP_003158636.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rru:Rru_A1268 HAD family hydrolase YP_003158637.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: dvu:DVU0176 glycerophosphoryl diester phosphodiesterase family protein YP_003158638.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dps:DP2071 hypothetical protein YP_003158639.1 KEGG: glo:Glov_1134 conserved hypothetical cytosolic protein YP_003158640.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: glo:Glov_1133 plasmid maintenance system antidote protein, XRE family YP_003158641.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: glo:Glov_0087 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_003158642.1 PFAM: Aldehyde Dehydrogenase; KEGG: bac:BamMC406_4662 succinic semialdehyde dehydrogenase YP_003158643.1 KEGG: dde:Dde_1270 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATPase AAA YP_003158644.1 KEGG: drm:Dred_2752 glycyl-radical activating family protein; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein YP_003158645.1 PFAM: pyruvate formate-lyase PFL; formate C- acetyltransferase glycine radical; KEGG: dde:Dde_1273 formate C-acetyltransferase YP_003158646.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rha:RHA1_ro08845 3-hydroxyisobutyrate dehydrogenase YP_003158647.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pde:Pden_1647 TRAP dicarboxylate transporter, DctP subunit YP_003158648.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: rsh:Rsph17029_3543 tripartite ATP-independent periplasmic transporter DctQ YP_003158649.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vvy:VVA1579 TRAP-type C4-dicarboxylate transport system, large permease component YP_003158650.1 KEGG: pth:PTH_2897 aldehyde:ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase YP_003158651.1 PFAM: thiamineS protein YP_003158652.1 KEGG: mta:Moth_1926 hypothetical protein YP_003158653.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: dvl:Dvul_2316 UBA/ThiF-type NAD/FAD binding protein YP_003158654.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; GAF domain protein; KEGG: sus:Acid_7913 NifA subfamily transcriptional regulator YP_003158655.1 PFAM: SAF domain protein; KEGG: bpt:Bpet0415 hypothetical protein YP_003158656.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: csa:Csal_1766 altronate dehydratase YP_003158657.1 PFAM: conserved hypothetical protein; KEGG: dsy:DSY3249 hypothetical protein YP_003158658.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: dsy:DSY3248 hypothetical protein YP_003158659.1 KEGG: dsy:DSY3247 hypothetical protein YP_003158660.1 PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; pyruvate carboxyltransferase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: dvl:Dvul_1328 pyruvate carboxylase YP_003158661.1 PFAM: inositol monophosphatase; KEGG: ttj:TTHA0077 inositol monophophatase family protein YP_003158662.1 KEGG: gme:Gmet_0780 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; PFAM: MCP methyltransferase CheR-type; chemotaxis protein CheB; PAS fold-4 domain protein; SMART: MCP methyltransferase CheR-type YP_003158663.1 KEGG: sfr:Sfri_1020 two component, sigma54 specific, transcriptional regulator, fis family protein; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003158664.1 KEGG: paa:Paes_0150 hypothetical protein YP_003158665.1 KEGG: lip:LI0267 hypothetical protein YP_003158666.1 KEGG: rme:Rmet_3472 hypothetical protein YP_003158667.1 KEGG: sat:SYN_00866 hypothetical protein YP_003158668.1 KEGG: bac:BamMC406_3216 hypothetical protein YP_003158669.1 PFAM: PBS lyase HEAT domain protein repeat- containing protein; SMART: PBS lyase HEAT domain protein repeat- containing protein; KEGG: det:DET0219 heat repeat-containing PBS lyase YP_003158670.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: gur:Gura_2407 transport-associated protein YP_003158671.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: ote:Oter_1161 protein of unknown function DUF883 ElaB YP_003158672.1 KEGG: pmr:PMI3698 hypothetical protein YP_003158674.1 TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: bpl:BURPS1106A_A1484 basic amino acid/polyamine antiporter (APA) family protein YP_003158675.1 KEGG: bxe:Bxe_A1877 arginine deiminase; TIGRFAM: arginine deiminase; PFAM: amidinotransferase YP_003158676.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: bpy:Bphyt_5576 ornithine carbamoyltransferase YP_003158677.1 KEGG: pap:PSPA7_5913 carbamate kinase; TIGRFAM: carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003158678.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: har:HEAR2593 outer membrane transport protein involved in copper (silver) tolerance (CusC) YP_003158679.1 PFAM: hemolysin D; KEGG: har:HEAR2592 ABC transport system, membrane protein YP_003158680.1 PFAM: ABC transporter related; ABC-2 type transporter; SMART: ATPase AAA; KEGG: mfa:Mfla_0167 response regulator receiver domain-containing protein YP_003158681.1 PFAM: ABC-2 type transporter; KEGG: har:HEAR2590 ABC transport system membrane protein YP_003158682.1 KEGG: bxe:Bxe_C0555 hypothetical protein YP_003158683.1 PFAM: ATPase AAA central domain protein; SMART: ATPase AAA; KEGG: sfu:Sfum_2258 ATPase AAA, central domain protein YP_003158684.1 PFAM: CsbD family protein; KEGG: gur:Gura_2405 CsbD family protein YP_003158685.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: ote:Oter_0826 transport-associated YP_003158686.1 KEGG: dol:Dole_2318 hypothetical protein YP_003158687.1 KEGG: dvl:Dvul_2487 signal transduction histidine kinase with CheB and CheR activity; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; ATP-binding region ATPase domain protein YP_003158688.1 PFAM: glycosyltransferase 36; carbohydrate binding; glycosyltransferase 36 associated; KEGG: net:Neut_1665 glycosyltransferase 36 YP_003158689.1 PFAM: protein of unknown function UPF0118; KEGG: rce:RC1_0400 hypothetical protein YP_003158690.1 PFAM: Integrase catalytic region; KEGG: dvu:DVU2010 ISD1, transposase OrfB YP_003158691.1 PFAM: transposase IS3/IS911 family protein; KEGG: dvl:Dvul_2601 transposase IS3/IS911 family protein YP_003158692.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gsu:GSU1038 sensory box histidine kinase/response regulator YP_003158693.1 KEGG: gme:Gmet_1992 two component, sigma54 specific, Fis family transcriptional regulator; TIGRFAM: PEP-CTERM system response regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA YP_003158694.1 KEGG: gur:Gura_2325 integral membrane sensor signal transduction histidine kinase; TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003158695.1 KEGG: gme:Gmet_1995 hypothetical protein YP_003158696.1 TIGRFAM: EpsI family protein; KEGG: ppd:Ppro_2442 hypothetical protein YP_003158697.1 TIGRFAM: eight transmembrane protein EpsH; KEGG: ppd:Ppro_2443 eight transmembrane protein EpsH YP_003158698.1 KEGG: dvu:DVUA0059 hypothetical protein YP_003158699.1 KEGG: cli:Clim_0273 hypothetical protein YP_003158700.1 KEGG: pmi:PMT9312_1324 asparagine synthase (glutamine-hydrolysing) YP_003158701.1 PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: dvu:DVUA0058 BNR/Asp-box repeat-containing protein YP_003158702.1 PFAM: polysaccharide deacetylase; KEGG: sil:SPO1535 polysaccharide deacetylase domain- containing protein YP_003158703.1 KEGG: dvl:Dvul_3044 hypothetical protein YP_003158704.1 PFAM: glycosyl transferase group 1; KEGG: dvl:Dvul_3055 glycosyl transferase, group 1 YP_003158705.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: dvl:Dvul_3056 hexapaptide repeat-containing transferase YP_003158706.1 KEGG: dvl:Dvul_3057 acetyltransferase YP_003158707.1 PFAM: glycosyl transferase group 1; KEGG: dvu:DVUA0051 glycosyl transferase, group 1 family protein YP_003158708.1 KEGG: dvl:Dvul_3059 glycosyl transferase, group 1 YP_003158709.1 PFAM: polysaccharide biosynthesis protein; KEGG: dvu:DVUA0049 polysaccharide biosynthesis family protein YP_003158710.1 PFAM: O-antigen polymerase; KEGG: dvu:DVUA0048 exopolysaccharide production protein YP_003158711.1 KEGG: dvu:DVUA0061 hypothetical protein YP_003158712.1 PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_3063 glycosyl transferase family protein YP_003158713.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dvu:DVUA0045 aminotransferase YP_003158714.1 TIGRFAM: FemAB-related protein, PEP-CTERM system- associated; PFAM: protein of unknown function DUF482; KEGG: ppd:Ppro_2469 hypothetical protein YP_003158715.1 TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; KEGG: gbm:Gbem_1774 polysaccharide deactylase family protein, PEP-Cterm locus subfamily YP_003158716.1 TIGRFAM: PEP-CTERM system associated protein; KEGG: dde:Dde_0834 lipoprotein YP_003158717.1 TIGRFAM: secretion ATPase PEP-CTERM locus subfamily; SMART: ATPase AAA; KEGG: dde:Dde_0833 ATPase YP_003158718.1 TIGRFAM: capsular exopolysaccharide family; KEGG: gur:Gura_2363 non-specific protein-tyrosine kinase YP_003158719.1 TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein; KEGG: gsu:GSU1984 polysaccharide chain length determinant protein YP_003158720.1 PFAM: polysaccharide export protein; KEGG: gbm:Gbem_1769 polysaccharide export protein, PEP-Cterm system-associated YP_003158721.1 TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: gme:Gmet_2031 sugar transferase YP_003158722.1 KEGG: ppd:Ppro_2478 TPR repeat-containing protein; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_003158723.1 KEGG: hha:Hhal_1528 hypothetical protein YP_003158724.1 KEGG: dar:Daro_2392 hypothetical protein YP_003158725.1 KEGG: dvl:Dvul_3075 hypothetical protein YP_003158726.1 KEGG: dvl:Dvul_3075 hypothetical protein YP_003158727.1 PFAM: Patched family protein; KEGG: aeh:Mlg_0154 RND efflux transporter YP_003158728.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dvl:Dvul_3075 hypothetical protein YP_003158729.1 PFAM: protein of unknown function DUF1555; KEGG: dvl:Dvul_3077 hypothetical protein YP_003158730.1 PFAM: protein of unknown function DUF1555; KEGG: azo:azo0435 hypothetical secreted protein YP_003158731.1 TIGRFAM: CAAX prenyl protease-related protein; PFAM: Abortive infection protein; KEGG: ppd:Ppro_2431 abortive infection protein YP_003158733.1 PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_2507 hypothetical protein YP_003158734.1 PFAM: type IV pilus assembly PilZ YP_003158735.1 KEGG: dar:Daro_2048 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003158736.1 KEGG: har:HEAR0296 protein kinase; PFAM: Circadian clock protein KaiC central region; KaiA binding; SMART: ATPase AAA YP_003158737.1 KEGG: har:HEAR0295 hypothetical protein YP_003158738.1 KEGG: ses:SARI_02323 hypothetical protein YP_003158739.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: stm:STM0612 hydrogenase protein YP_003158740.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: sea:SeAg_B0650 molybdopterin-containing oxidoreductase catalytic subunit YP_003158741.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: see:SNSL254_A0663 component of anaerobic dehydrogenase YP_003158742.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: pca:Pcar_0664 response regulator protein YP_003158744.1 PFAM: protein of unknown function DUF62; KEGG: pis:Pisl_0002 hypothetical protein YP_003158745.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: dde:Dde_2704 cobalamin-5'-phosphate synthase YP_003158746.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: dde:Dde_1586 2-nitropropane dioxygenase family oxidoreductase YP_003158747.1 TIGRFAM: flagellar export protein FliJ; KEGG: dde:Dde_2705 flagellar FliJ protein YP_003158748.1 KEGG: dde:Dde_2706 hypothetical protein YP_003158749.1 KEGG: dde:Dde_2707 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_003158750.1 KEGG: dvl:Dvul_0420 flagellin domain-containing protein YP_003158751.1 KEGG: dsh:Dshi_1393 hypothetical protein YP_003158752.1 KEGG: mag:amb4316 hypothetical protein YP_003158753.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: gbm:Gbem_1134 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III YP_003158754.1 PFAM: FAD linked oxidase domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3604 oxidoreductase YP_003158755.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: neu:NE1583 hypothetical protein YP_003158756.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: gsu:GSU2439 RelE protein YP_003158757.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dvl:Dvul_1701 twin arginine-targeting protein translocase YP_003158758.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dvl:Dvul_0301 redoxin domain-containing protein YP_003158759.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sat:SYN_00591 thioredoxin peroxidase YP_003158760.1 PFAM: nitroreductase; KEGG: hmo:HM1_1491 NADH dehydrogenase/NAD(p)h nitroreductase YP_003158761.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: dvl:Dvul_0413 sigma-54 dependent trancsriptional regulator YP_003158762.1 PFAM: protein of unknown function DUF81; KEGG: dvl:Dvul_0412 hypothetical protein YP_003158763.1 KEGG: dvl:Dvul_0411 hypothetical protein YP_003158764.1 KEGG: dvl:Dvul_0410 sigma-54 dependent trancsriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_003158765.1 KEGG: dvl:Dvul_0409 hypothetical protein YP_003158766.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0651 integral membrane sensor signal transduction histidine kinase YP_003158767.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvl:Dvul_0407 response regulator receiver protein YP_003158768.1 KEGG: sfu:Sfum_0655 hypothetical protein YP_003158769.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dol:Dole_2335 response regulator receiver protein YP_003158770.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: dvu:DVU2967 sensor histidine kinase/response regulator YP_003158771.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dps:DP1491 Ntr family protein two-component system response regulator YP_003158772.1 KEGG: sfu:Sfum_3406 response regulator receiver protein YP_003158773.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: sfu:Sfum_3407 dinitrogenase iron-molybdenum cofactor biosynthesis YP_003158774.1 PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_3408 cobyrinic acid a,c-diamide synthase YP_003158775.1 PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_3409 cobyrinic acid a,c-diamide synthase YP_003158776.1 PFAM: protein of unknown function DUF134; Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: sfu:Sfum_3410 dinitrogenase iron-molybdenum cofactor biosynthesis YP_003158777.1 PFAM: protein of unknown function DUF134; KEGG: tpd:Teth39_0655 hypothetical protein YP_003158778.1 PFAM: CBS domain containing protein; amino acid- binding ACT domain protein; SMART: CBS domain containing protein; KEGG: cau:Caur_1817 CBS domain-containing protein YP_003158779.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: sth:STH703 ABC transporter ATP-binding protein YP_003158780.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rrs:RoseRS_0623 AMP-dependent synthetase and ligase YP_003158781.1 PFAM: inner-membrane translocator; KEGG: rru:Rru_A3508 inner-membrane translocator YP_003158782.1 PFAM: inner-membrane translocator; KEGG: sth:STH706 branched-chain amino acid ABC transporter permease protein YP_003158783.1 PFAM: extracellular ligand-binding receptor; KEGG: mag:amb3592 ABC-type branched-chain amino acid transport systems, periplasmic component YP_003158784.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: cau:Caur_1081 ABC transporter related YP_003158785.1 KEGG: dvl:Dvul_0136 phenylacetate-coenzyme A ligase YP_003158786.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gsu:GSU3418 sigma-54 dependent DNA-binding response regulator YP_003158787.1 KEGG: glo:Glov_3526 integral membrane sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein YP_003158788.1 PFAM: protein of unknown function DUF520; KEGG: dvl:Dvul_1191 nucleotide-binding protein YP_003158789.1 PFAM: ROSMUCR transcriptional regulator; KEGG: dde:Dde_0303 MucR family transcriptional regulator YP_003158790.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: mta:Moth_1179 ferredoxin-dependent glutamate synthase YP_003158791.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: gsu:GSU3230 sensory box histidine kinase YP_003158792.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: gsu:GSU3229 LuxR family DNA-binding response regulator YP_003158793.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: swo:Swol_1763 hypothetical protein YP_003158794.1 KEGG: dde:Dde_3025 hypothetical protein YP_003158795.1 PFAM: beta-lactamase domain protein; KEGG: dvl:Dvul_0948 beta-lactamase domain- containing protein YP_003158796.1 PFAM: beta-lactamase domain protein; KEGG: pca:Pcar_1589 beta-lactamase superfamily hydrolase YP_003158797.1 KEGG: glo:Glov_1689 cobyrinic acid ac-diamide synthase YP_003158798.1 KEGG: pca:Pcar_1581 hypothetical protein YP_003158799.1 KEGG: ppd:Ppro_1976 sigma-54 dependent trancsriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold domain protein; PAS fold-4 domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; PAS domain containing protein YP_003158800.1 KEGG: dvl:Dvul_0786 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase YP_003158801.1 KEGG: dde:Dde_3134 S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; S- adenosyl-L-homocysteine hydrolase, NAD binding YP_003158802.1 PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; regulatory protein ArsR; Methyltransferase type 12; SMART: regulatory protein ArsR; KEGG: dvl:Dvul_2348 methyltransferase type 11 YP_003158803.1 PFAM: protein of unknown function DUF721; KEGG: dde:Dde_3136 hypothetical protein YP_003158804.1 KEGG: vco:VC0395_A1290 hypothetical protein YP_003158805.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: mgm:Mmc1_3513 filamentation induced by cAMP protein Fic YP_003158806.1 KEGG: dol:Dole_3266 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein family 3; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein; ATP-binding region ATPase domain protein YP_003158807.1 PFAM: acriflavin resistance protein; KEGG: gfo:GFO_1328 AcrB/AcrD/AcrF family membrane transport protein YP_003158808.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pdi:BDI_1786 metal transport- related, exported protein YP_003158809.1 PFAM: YHS domain protein; KEGG: sfu:Sfum_1432 YHS domain protein YP_003158810.1 PFAM: outer membrane efflux protein; KEGG: gsu:GSU1330 metal ion efflux outer membrane protein family protein YP_003158811.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: fno:Fnod_0054 pyruvate ferredoxin/flavodoxin oxidoreductase YP_003158812.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: fno:Fnod_0053 indolepyruvate ferredoxin oxidoreductase YP_003158814.1 KEGG: cph:Cpha266_1213 ATPase AAA YP_003158815.1 KEGG: par:Psyc_0879 death-on-curing family protein YP_003158816.1 TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dde:Dde_0573 carboxynorspermidine decarboxylase YP_003158817.1 PFAM: Saccharopine dehydrogenase; KEGG: dvl:Dvul_2516 saccharopine dehydrogenase YP_003158818.1 TIGRFAM: arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dvl:Dvul_2517 arginine decarboxylase YP_003158819.1 PFAM: protein of unknown function DUF204; KEGG: dde:Dde_2978 hypothetical protein YP_003158820.1 KEGG: gsu:GSU0910 aldehyde:ferredoxin oxidoreductase, tungsten-containing; PFAM: Aldehyde ferredoxin oxidoreductase ; aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase YP_003158821.1 KEGG: dvl:Dvul_3022 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; extracellular solute-binding protein family 3; PAS fold domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; PAC repeat- containing protein; histidine kinase A domain protein; PAS domain containing protein YP_003158822.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: dvl:Dvul_3024 response regulator receiver modulated metal dependent phosphohydrolase YP_003158824.1 KEGG: cyt:cce_2032 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_003158825.1 PFAM: ApbE family lipoprotein; KEGG: dvu:DVU1097 hypothetical protein YP_003158826.1 KEGG: dol:Dole_2384 hypothetical protein YP_003158827.1 KEGG: ote:Oter_4041 hypothetical protein YP_003158828.1 PFAM: conserved hypothetical protein; KEGG: dol:Dole_2386 hypothetical protein YP_003158829.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: aha:AHA_3991 transporter YP_003158830.1 KEGG: dde:Dde_0678 rhodanese-like protein YP_003158831.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: dde:Dde_0679 rhodanese-like protein YP_003158832.1 KEGG: dde:Dde_0680 formate dehydrogenase gamma subunit YP_003158833.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0681 Fe-S-cluster-containing hydrogenase components 1-like YP_003158834.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: dde:Dde_0682 hypothetical protein YP_003158835.1 KEGG: dde:Dde_0683 cytochrome c family protein YP_003158836.1 KEGG: dde:Dde_0659 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; PAS domain containing protein YP_003158837.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dvl:Dvul_0771 oxidoreductase, selenocysteine- containing YP_003158838.1 PFAM: UspA domain protein; KEGG: dol:Dole_2256 UspA domain-containing protein YP_003158839.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: sfu:Sfum_0819 CoB--CoM heterodisulfide reductase YP_003158840.1 KEGG: sfu:Sfum_0820 heterodisulfide reductase, C subunit YP_003158841.1 PFAM: response regulator receiver; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glucose- inhibited division protein A; SMART: response regulator receiver; KEGG: sfu:Sfum_0821 response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003158842.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: sfu:Sfum_0822 formate dehydrogenase YP_003158843.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: sfu:Sfum_0823 methyl-viologen-reducing hydrogenase, delta subunit YP_003158844.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; KEGG: ote:Oter_3677 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003158845.1 PFAM: transposase IS3/IS911 family protein; KEGG: tye:THEYE_A0843 ISCc3, transposase OrfA YP_003158846.1 PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: gbm:Gbem_0673 two component, sigma54 specific, transcriptional regulator, fis family YP_003158847.1 TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain protein; TrkA-C domain protein; KEGG: dps:DP0976 hypothetical protein YP_003158848.1 PFAM: thioesterase superfamily protein; KEGG: ttj:TTHA1037 hypothetical protein YP_003158850.1 PFAM: extracellular solute-binding protein family 1; KEGG: pca:Pcar_2087 hypothetical protein YP_003158851.1 KEGG: dvl:Dvul_2550 hypothetical protein YP_003158852.1 PFAM: major facilitator superfamily MFS_1; KEGG: dol:Dole_1452 major facilitator transporter YP_003158853.1 PFAM: phosphate acetyl/butaryl transferase; KEGG: amt:Amet_4309 phosphate butyryltransferase YP_003158854.1 TIGRFAM: butyrate kinase; PFAM: acetate and butyrate kinase; KEGG: gka:GK2380 butyrate kinase YP_003158855.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: mhu:Mhun_2752 hemerythrin-like, metal-binding YP_003158856.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dps:DP2835 outer membrane protein (OprM) YP_003158857.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rba:RB11154 RND efflux membrane fusion protein precursor YP_003158858.1 PFAM: acriflavin resistance protein; KEGG: dps:DP2837 cobalt-zinc-cadmium resistance protein (CzcA) YP_003158860.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1 YP_003158861.1 KEGG: pdi:BDI_0787 pyruvate-formate lyase- activating enzyme; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003158862.1 PFAM: pyruvate formate-lyase PFL; formate C- acetyltransferase glycine radical; KEGG: dps:DP0616 formate C-acetyltransferase YP_003158863.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dvl:Dvul_2855 extracellular solute-binding protein YP_003158864.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP1983 glutamine ABC-transporter, permease protein (GlnP) YP_003158865.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dvl:Dvul_2857 ABC transporter related YP_003158866.1 PFAM: pseudouridine synthase; KEGG: dps:DP3024 pseudouridine synthase YP_003158867.1 PFAM: ATP-NAD/AcoX kinase; KEGG: dde:Dde_2618 NAD(+) kinase YP_003158868.1 KEGG: dde:Dde_0639 hypothetical protein YP_003158869.1 PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: dde:Dde_0638 anti-sigma-28 factor, FlgM YP_003158870.1 PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: dde:Dde_1137 metallo-beta-lactamase family protein YP_003158871.1 TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: dde:Dde_1133 30S ribosomal protein S2 YP_003158872.1 TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; KEGG: dvl:Dvul_2109 elongation factor Ts YP_003158873.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: dvl:Dvul_2111 uridylate kinase YP_003158874.1 TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: dvl:Dvul_2112 ribosome recycling factor YP_003158875.1 KEGG: dvu:DVU0869 UDP diphosphate synthase; TIGRFAM: UDP diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_003158876.1 PFAM: phosphatidate cytidylyltransferase; KEGG: dvl:Dvul_2114 phosphatidate cytidylyltransferase YP_003158877.1 KEGG: dvu:DVU0866 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein YP_003158878.1 KEGG: dde:Dde_1122 peptidase RseP; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein YP_003158879.1 PFAM: peptidase M22 glycoprotease; KEGG: dde:Dde_1121 glycoprotease family protein YP_003158880.1 PFAM: flagellin domain protein; KEGG: dde:Dde_1501 flagellin YP_003158881.1 PFAM: flagellar hook-associated 2 domain protein; flagellar hook-associated protein 2 domain protein; KEGG: lip:LI0211 flagellar capping protein YP_003158882.1 TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: dvl:Dvul_2120 flagellar protein FliS YP_003158883.1 KEGG: rca:Rcas_0489 asparagine synthase (glutamine- hydrolyzing); TIGRFAM: asparagine synthase (glutamine- hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_003158884.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: lip:LI0340 hypothetical protein YP_003158886.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvl:Dvul_2126 radical SAM domain-containing protein YP_003158887.1 PFAM: delta-aminolevulinic acid dehydratase; KEGG: dvl:Dvul_2127 delta-aminolevulinic acid dehydratase YP_003158888.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvl:Dvul_2128 radical SAM domain-containing protein YP_003158889.1 SMART: regulatory protein AsnC/Lrp family; KEGG: dde:Dde_2578 AsnC family transcriptional regulator YP_003158890.1 KEGG: dde:Dde_2632 ribulose-5-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase YP_003158891.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: noc:Noc_2285 camphor resistance CrcB protein YP_003158892.1 PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: dde:Dde_0161 LytR/AlgR family transcriptional regulator YP_003158893.1 PFAM: histidine kinase internal region; GAF domain protein; 5TM Receptors of the LytS-YhcK type transmembrane region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dde:Dde_0160 ATP-binding region, ATPase-like YP_003158894.1 PFAM: carbon starvation protein CstA; KEGG: dde:Dde_0227 carbon starvation protein A YP_003158895.1 PFAM: protein of unknown function DUF180; KEGG: dvl:Dvul_2419 flagellar assembly protein FliW YP_003158896.1 TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator; KEGG: dde:Dde_3150 carbon storage regulator YP_003158897.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL YP_003158898.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: dvl:Dvul_2422 flagellar hook-associated protein FlgK YP_003158899.1 KEGG: lip:LI0746 hypothetical protein YP_003158900.1 KEGG: dde:Dde_3154 membrane proteins, metalloendopeptidase-like YP_003158901.1 PFAM: flagellar P-ring protein; KEGG: dde:Dde_3155 flagellar basal body P-ring protein YP_003158902.1 PFAM: flagellar L-ring protein; KEGG: dvl:Dvul_2426 flagellar basal body L-ring protein YP_003158903.1 TIGRFAM: flagella basal body P-ring formation protein FlgA; KEGG: dde:Dde_3157 FlgA family protein YP_003158904.1 TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: dde:Dde_3158 flagellar basal body rod protein FlgG YP_003158905.1 TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3159 flagellar basal-body rod protein YP_003158906.1 PFAM: protein of unknown function DUF150; KEGG: dde:Dde_3160 hypothetical protein YP_003158907.1 KEGG: dde:Dde_3161 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein YP_003158908.1 KEGG: dvl:Dvul_2432 hypothetical protein YP_003158909.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; elongation factor Tu domain 2 protein; KEGG: dde:Dde_3162 translation initiation factor IF- 2 YP_003158910.1 PFAM: protein of unknown function DUF503; KEGG: dvl:Dvul_2434 hypothetical protein YP_003158911.1 TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: neu:NE0762 ribosome-binding factor A YP_003158912.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_3164 DHH family protein YP_003158913.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: dvl:Dvul_2436 tRNA pseudouridine synthase B YP_003158914.1 TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: dde:Dde_3166 30S ribosomal protein S15 YP_003158915.1 KEGG: dde:Dde_3167 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; RNA binding S1 domain protein; exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein YP_003158916.1 KEGG: dvl:Dvul_2272 hypothetical protein YP_003158917.1 PFAM: VanZ family protein; KEGG: sml:Smlt4028 transmembrane drug resistance protein YP_003158918.1 KEGG: dvu:DVU1361 lipid A disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19 YP_003158920.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: dde:Dde_2049 alpha- isopropylmalate/homocitrate synthase family transferase YP_003158921.1 PFAM: Hemolysin-type calcium-binding region; KEGG: cli:Clim_2160 hemolysin-type calcium-binding region YP_003158922.1 PFAM: DRTGG domain protein; KEGG: dde:Dde_1705 cobyrinic acid a,c-diamide synthase family protein YP_003158923.1 PFAM: CoA-binding domain protein; KEGG: hau:Haur_3750 acetyl coenzyme A synthetase subunit alpha YP_003158924.1 KEGG: dde:Dde_1708 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein YP_003158925.1 PFAM: flagellin domain protein; KEGG: dde:Dde_1502 flagellin YP_003158926.1 PFAM: flagellar protein FlaG protein; KEGG: cju:C8J_0508 flagellar protein FlaG YP_003158927.1 PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; flagellar basal body rod protein; KEGG: dvl:Dvul_1636 hypothetical protein YP_003158928.1 PFAM: flagellar hook capping protein; KEGG: dvl:Dvul_1635 flagellar hook capping protein YP_003158929.1 PFAM: flagellar hook-length control protein; KEGG: dde:Dde_1713 hypothetical protein YP_003158930.1 KEGG: ppd:Ppro_0125 hypothetical protein YP_003158931.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; protein of unknown function DUF1365; KEGG: dol:Dole_0349 cyclopropane-fatty-acyl- phospholipid synthase YP_003158932.1 PFAM: amine oxidase; KEGG: dol:Dole_0350 amine oxidase YP_003158933.1 PFAM: protein of unknown function DUF1295; 3-oxo-5- alpha-steroid 4-dehydrogenase domain protein; KEGG: gsu:GSU2323 hypothetical protein YP_003158934.1 KEGG: dol:Dole_0351 hypothetical protein YP_003158935.1 KEGG: dde:Dde_0607 hypothetical protein YP_003158936.1 PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; KEGG: sfu:Sfum_3991 signal transduction histidine kinase regulating citrate/malate metabolism YP_003158937.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sfu:Sfum_3992 response regulator receiver and unknown domain protein YP_003158938.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bpt:Bpet2345 TRAP-type C4- dicarboxylate transport system, periplasmic component YP_003158939.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bcl:ABC4078 C4-dicarboxylate transport system permease small protein YP_003158940.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dsy:DSY4744 hypothetical protein YP_003158941.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: eca:ECA4071 peptidyl-prolyl cis-trans isomerase A (rotamase A) YP_003158942.1 PFAM: AMMECR1 domain protein; KEGG: dvl:Dvul_2231 AMMECR1 domain-containing protein YP_003158943.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: pca:Pcar_1292 phosphoribosylglycinamide formyltransferase YP_003158944.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dde:Dde_2837 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase YP_003158945.1 TIGRFAM: valyl-tRNA synthetase; KEGG: dde:Dde_2839 valyl-tRNA synthetase YP_003158946.1 KEGG: dde:Dde_2840 hypothetical protein YP_003158947.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_2193 HD domain-containing protein YP_003158949.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: dde:Dde_2029 K+ transporter trk YP_003158950.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dde:Dde_2030 potassium transporter peripheral membrane component YP_003158951.1 PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: dvl:Dvul_1371 nuclease YP_003158952.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein; KEGG: dde:Dde_2052 sigma-70 factor YP_003158953.1 KEGG: dvl:Dvul_1369 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein YP_003158954.1 PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; MutS III domain protein; KEGG: dvl:Dvul_1368 Smr protein/MutS2 YP_003158955.1 KEGG: dvl:Dvul_1367 GatB/YqeY domain-containing protein YP_003158956.1 TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: dvl:Dvul_1366 30S ribosomal protein S21 YP_003158957.1 KEGG: dvl:Dvul_1365 hypothetical protein YP_003158958.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: dde:Dde_2058 histone-like DNA-binding protein YP_003158959.1 KEGG: dvl:Dvul_1363 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase YP_003158960.1 KEGG: dde:Dde_2062 hypothetical protein YP_003158961.1 PFAM: Ferritin Dps family protein; KEGG: dvl:Dvul_1565 ferritin, Dps family protein YP_003158962.1 PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: sfu:Sfum_2340 redoxin domain protein YP_003158963.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dde:Dde_3572 type I phosphodiesterase/nucleotide pyrophosphatase family protein YP_003158964.1 PFAM: UvrD/REP helicase; KEGG: dde:Dde_3571 ATP-dependent DNA helicase UvrD YP_003158965.1 PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sfu:Sfum_0653 sulphate transporter YP_003158966.1 PFAM: UspA domain protein; KEGG: tye:THEYE_A0711 universal stress protein YP_003158967.1 PFAM: class II aldolase/adducin family protein; protein of unknown function UPF0066; KEGG: dvl:Dvul_2810 class II aldolase/adducin family protein YP_003158968.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicases ; helicase domain protein; KEGG: mac:MA3956 ATP-dependent RNA helicase YP_003158969.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dvl:Dvul_0940 rubrerythrin YP_003158970.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: dde:Dde_2289 translation factor SUA5 YP_003158971.1 KEGG: dde:Dde_1455 hypothetical protein YP_003158972.1 PFAM: CinA domain protein; KEGG: dde:Dde_1458 CinA-like YP_003158973.1 PFAM: protein of unknown function DUF1653; KEGG: abo:ABO_2409 hypothetical protein YP_003158974.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: dde:Dde_1955 FtsK/SpoIIIE family protein YP_003158975.1 TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor P/YeiP protein; Elongation factor KOW domain protein; KEGG: dde:Dde_1953 translation elongation factor P (EF-P) YP_003158976.1 PFAM: dehydroquinase class II; KEGG: dvl:Dvul_1422 3-dehydroquinate dehydratase YP_003158978.1 PFAM: GTP-binding protein HSR1-related; KEGG: dde:Dde_1950 GTPase EngB YP_003158979.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); Na+/H+ antiporter MnhB subunit-related protein; KEGG: psa:PST_1529 monovalent cation/H+ antiporter subunit A YP_003158980.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: cja:CJA_0047 pH adaptation potassium efflux system C transmembrane protein YP_003158981.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: pap:PSPA7_4322 monovalent cation/H+ antiporter subunit D YP_003158982.1 PFAM: cation antiporter; KEGG: tcx:Tcr_0060 cation antiporter YP_003158983.1 PFAM: multiple resistance and pH regulation protein F; KEGG: cja:CJA_0050 PhaF protein YP_003158984.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: cja:CJA_0051 pH adaptation potassium efflux system protein G YP_003158985.1 TIGRFAM: uracil phosphoribosyltransferase; KEGG: dvl:Dvul_1968 uracil phosphoribosyltransferase YP_003158986.1 KEGG: dde:Dde_1465 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4- carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein YP_003158987.1 KEGG: dde:Dde_1466 lipoprotein YP_003158988.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: dde:Dde_1467 imidazoleglycerol-phosphate dehydratase YP_003158989.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: dde:Dde_1468 sec-independent protein translocase TatC YP_003158990.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dvl:Dvul_1951 twin-arginine translocation protein, TatB subunit YP_003158991.1 TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; KEGG: dvl:Dvul_1950 bifunctional GMP synthase/glutamine amidotransferase protein YP_003158992.1 KEGG: dvl:Dvul_1949 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; SMART: CBS domain containing protein YP_003158993.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_0608 ATPase YP_003158994.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_0609 ATPase YP_003158995.1 PFAM: inner-membrane translocator; KEGG: dvl:Dvul_2395 inner-membrane translocator YP_003158996.1 PFAM: inner-membrane translocator; KEGG: dde:Dde_0611 high-affinity branched-chain amino acid ABC transporter, permease protein YP_003158997.1 PFAM: extracellular ligand-binding receptor; KEGG: dde:Dde_0612 high-affinity branched chain amino acid ABC transporter, periplasmic branched chain amino acid-binding protein YP_003158998.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1473 TPR repeat-containing protein YP_003158999.1 KEGG: dvl:Dvul_1947 hypothetical protein YP_003159000.1 PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1474 cytochrome c-type biogenesis protein CcmC YP_003159001.1 PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dde:Dde_1475 cytochrome c-type biogenesis protein CcmB YP_003159002.1 KEGG: dvl:Dvul_1944 ABC transporter related; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: ATPase AAA YP_003159003.1 PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1477 cytochrome c-type biogenesis protein CcmF YP_003159004.1 KEGG: dde:Dde_1478 cytochrome c-type biogenesis protein CcmE YP_003159005.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; histidinol-phosphate phosphatase family protein; KEGG: dvl:Dvul_1940 histidinol-phosphate phosphatase family protein YP_003159006.1 PFAM: glycosyl transferase group 1; KEGG: pgn:PGN_0242 probable glycosyl transferase family 1 YP_003159007.1 PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1629 heptosyltransferase family protein YP_003159008.1 PFAM: ferric-uptake regulator; KEGG: dde:Dde_3674 ferric uptake regulator family protein YP_003159009.1 TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: dde:Dde_3193 desulfoferrodoxin YP_003159010.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: tde:TDE1052 rubredoxin YP_003159011.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dde:Dde_3195 rubredoxin-oxygen oxidoreductase YP_003159012.1 KEGG: dde:Dde_0372 hypothetical protein YP_003159013.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: dde:Dde_3204 cytochrome d ubiquinol oxidase, subunit I YP_003159014.1 KEGG: dvl:Dvul_0119 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II YP_003159015.1 TIGRFAM: TraB family protein; PFAM: TraB determinant protein; KEGG: dsy:DSY1534 hypothetical protein YP_003159016.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2651 MATE efflux family protein YP_003159018.1 PFAM: protein of unknown function DUF497; KEGG: neu:NE2104 hypothetical protein YP_003159019.1 KEGG: mmw:Mmwyl1_2747 hypothetical protein YP_003159020.1 KEGG: paa:Paes_1756 sulfate adenylyltransferase, large subunit YP_003159021.1 KEGG: sfu:Sfum_2358 hypothetical protein YP_003159022.1 PFAM: PilT protein domain protein; KEGG: cyb:CYB_1698 PilT domain-containing protein YP_003159023.1 KEGG: maq:Maqu_2253 hypothetical protein YP_003159024.1 PFAM: PilT protein domain protein; KEGG: bcm:Bcenmc03_0064 PilT domain-containing protein YP_003159025.1 TIGRFAM: prevent-host-death family protein; KEGG: cak:Caul_3677 prevent-host-death family protein YP_003159026.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rrs:RoseRS_2039 prevent-host-death family protein YP_003159027.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: rrs:RoseRS_2038 addiction module antitoxin YP_003159028.1 KEGG: hypothetical protein YP_003159029.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: bbt:BBta_p0025 cAMP-induced filamentation protein YP_003159030.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: rrs:RoseRS_2038 addiction module antitoxin YP_003159032.1 KEGG: gvi:glr4239 hypothetical protein YP_003159033.1 PFAM: PemK family protein; KEGG: dra:DR_0417 ppGpp-regulated growth inhibitor ChpA/MazF YP_003159034.1 PFAM: SpoVT/AbrB domain protein; KEGG: dra:DR_0416 ppGpp-regulated growth inhibitor suppressor ChpR/MazE YP_003159035.1 KEGG: gme:Gmet_2512 hypothetical protein YP_003159036.1 KEGG: sat:SYN_01115 hypothetical protein YP_003159037.1 KEGG: sat:SYN_01117 hypothetical protein YP_003159038.1 PFAM: glycosyl transferase family 2; KEGG: rba:RB2469 glycosyltransferase-like protein YP_003159039.1 PFAM: glycosyl transferase family 2; KEGG: npu:Npun_R5613 glycosyl transferase family protein YP_003159040.1 KEGG: pph:Ppha_0562 acetyltransferase YP_003159041.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DPPB80 related to F420H2-dehydrogenase, beta subunit YP_003159042.1 KEGG: bfs:BF2806 hypothetical protein YP_003159043.1 PFAM: glycosyl transferase group 1; KEGG: syn:slr1077 hypothetical protein YP_003159044.1 PFAM: glycosyl transferase family 2; KEGG: bha:BH3714 exopolysaccharide biosynthesis YP_003159045.1 PFAM: glycosyl transferase family 11; KEGG: sat:SYN_02664 alpha-1,2-fucosyltransferase YP_003159046.1 KEGG: lil:LA2089 hypothetical protein YP_003159047.1 KEGG: gur:Gura_2346 lipopolysaccharide biosynthesis protein-like protein YP_003159048.1 PFAM: polysaccharide biosynthesis protein; KEGG: maq:Maqu_1637 polysaccharide biosynthesis protein YP_003159049.1 KEGG: ooe:OEOE_1831 beta-galactosidase YP_003159050.1 KEGG: ppu:PP_1782 dTDP-4-dehydrorhamnose 3,5- epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_003159051.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: ajs:Ajs_0539 glucose-1-phosphate thymidylyltransferase YP_003159052.1 KEGG: pca:Pcar_1794 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-6-phosphate isomerase type II YP_003159053.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: gbm:Gbem_1135 NAD-dependent epimerase/dehydratase YP_003159054.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_2901 GDP-mannose 4,6-dehydratase YP_003159055.1 PFAM: protein of unknown function DUF1555; KEGG: mfa:Mfla_2396 hypothetical protein YP_003159056.1 PFAM: protein of unknown function DUF1568; KEGG: gsu:GSU1541 hypothetical protein YP_003159057.1 KEGG: gur:Gura_2887 hypothetical protein YP_003159058.1 KEGG: hypothetical protein YP_003159059.1 KEGG: ote:Oter_0264 beta strand repeat-containing protein YP_003159060.1 KEGG: pph:Ppha_0193 hypothetical protein YP_003159061.1 KEGG: pph:Ppha_0192 hypothetical protein YP_003159062.1 PFAM: S23 ribosomal protein; KEGG: gur:Gura_3825 hypothetical protein YP_003159063.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sat:SYN_01508 transcriptional regulator helix turn helix YP_003159064.1 KEGG: dvl:Dvul_1455 XRE family plasmid maintenance system antidote protein; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003159065.1 PFAM: HicB family protein; KEGG: rfr:Rfer_0180 HicB YP_003159066.1 KEGG: ppd:Ppro_0100 hypothetical protein YP_003159068.1 KEGG: shn:Shewana3_1797 CopG family transcriptional regulator YP_003159069.1 PFAM: plasmid stabilization system; KEGG: plu:plu2306 hypothetical protein YP_003159070.1 PFAM: type IV pilus assembly PilZ YP_003159072.1 PFAM: Tetratricopeptide TPR_2 repeat protein; Tetratricopeptide TPR_4; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: gme:Gmet_1506 tetratricopeptide TPR_4 YP_003159073.1 PFAM: glycosyl transferase family 4; KEGG: gur:Gura_2584 glycosyl transferase family protein YP_003159074.1 TIGRFAM: EpsI family protein; eight transmembrane protein EpsH; KEGG: gme:Gmet_1503 hypothetical protein YP_003159075.1 SMART: ATPase AAA; KEGG: sat:SYN_00778 general secretion pathway protein A YP_003159076.1 KEGG: sat:SYN_00779 tyrosine-protein kinase YP_003159077.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: sat:SYN_01204 chain length determinant protein, Wzz-like protein YP_003159078.1 KEGG: sat:SYN_00781 hypothetical protein YP_003159079.1 PFAM: polysaccharide export protein; KEGG: sat:SYN_01205 periplasmic protein involved in polysaccharide export YP_003159081.1 PFAM: type IV pilus assembly PilZ YP_003159082.1 PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; response regulator receiver; KEGG: gur:Gura_2708 two component, sigma-54 specific, fis family transcriptional regulator YP_003159083.1 PFAM: protein of unknown function DUF1555; KEGG: sat:SYN_01115 hypothetical protein YP_003159084.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: eba:ebA2889 hypothetical protein YP_003159085.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; KEGG: eba:ebA2890 hypothetical protein YP_003159086.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3633 peptidoglycan-associated lipoprotein YP_003159088.1 PFAM: UspA domain protein; KEGG: dde:Dde_1454 universal stress protein YP_003159089.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3071 amino acid ABC transporter permease YP_003159090.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: dde:Dde_3070 extracellular solute-binding protein YP_003159091.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3069 amino acid ABC transporter permease YP_003159092.1 PFAM: TonB-dependent receptor plug; KEGG: dde:Dde_0447 TonB dependent receptor domain- containing protein YP_003159093.1 KEGG: tde:TDE1685 GGDEF domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Two component regulator propeller; Two component regulator three Y domain protein; SMART: GGDEF domain containing protein YP_003159094.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pca:Pcar_2195 Fe-S oxidoreductase YP_003159095.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: dvl:Dvul_0746 cell division protein FtsZ YP_003159096.1 TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: dvl:Dvul_0745 cell division protein FtsA YP_003159097.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: dvl:Dvul_0744 polypeptide-transport- associated domain-containing protein YP_003159098.1 TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dde:Dde_1043 UDP-N-acetylmuramate--L-alanine ligase YP_003159099.1 KEGG: dvl:Dvul_0741 UDP-N-acetylglucosamine--N- acetylmuramyl-(pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase; TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28 YP_003159100.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: dde:Dde_1041 cell cycle protein FtsW YP_003159101.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: dvl:Dvul_0739 UDP-N-acetylmuramoylalanine--D- glutamate ligase YP_003159102.1 KEGG: dde:Dde_1039 phospho-N-acetylmuramoyl- pentapeptide-transferase; TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-transf erase; PFAM: glycosyl transferase family 4 YP_003159103.1 TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-di aminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: dde:Dde_1038 UDP-N-acetylmuramoylalanyl-D- glutamyl-2,6-diaminopimelate--D-alanyl- D-alanyl ligase YP_003159104.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: dvu:DVU2509 UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase YP_003159105.1 PFAM: penicillin-binding protein transpeptidase; PASTA domain containing protein; Penicillin-binding protein dimerisation domain; KEGG: dde:Dde_1036 peptidoglycan glycosyltransferase YP_003159106.1 KEGG: dde:Dde_1035 hypothetical protein YP_003159107.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: dde:Dde_1034 methyltransferase YP_003159108.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: dvl:Dvul_0732 cell division protein MraZ YP_003159109.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ote:Oter_2456 NADH dehydrogenase (quinone) YP_003159110.1 KEGG: ote:Oter_2455 PTS IIA-like nitrogen- regulatory protein PtsN YP_003159111.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ote:Oter_2456 NADH dehydrogenase (quinone) YP_003159112.1 KEGG: ote:Oter_2457 respiratory-chain NADH dehydrogenase, subunit 1 YP_003159113.1 KEGG: ote:Oter_2458 NAD-dependent dehydrogenase subunit YP_003159114.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ote:Oter_2459 NADH dehydrogenase (quinone) YP_003159115.1 KEGG: ote:Oter_2466 NADH-ubiquinone oxidoreductase chain 49kDa YP_003159116.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ote:Oter_2467 NADH ubiquinone oxidoreductase 20 kDa subunit YP_003159117.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: dde:Dde_2473 chaperonin GroEL YP_003159118.1 PFAM: chaperonin Cpn10; KEGG: afe:Lferr_0699 chaperonin Cpn10 YP_003159119.1 KEGG: dde:Dde_0196 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl- tRNA synthetase, class IIa-like YP_003159121.1 KEGG: glo:Glov_1726 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein YP_003159122.1 KEGG: glo:Glov_3328 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; CHASE4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein YP_003159123.1 KEGG: glo:Glov_1763 hypothetical protein YP_003159124.1 PFAM: cytochrome c class I; KEGG: tye:THEYE_A0176 cytochrome c family protein YP_003159125.1 KEGG: dde:Dde_0392 hypothetical protein YP_003159126.1 KEGG: dol:Dole_1356 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003159127.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: gur:Gura_3898 type II secretion system protein E YP_003159128.1 KEGG: gur:Gura_3899 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: Metal-dependent hydrolase HDOD; metal- dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003159129.1 KEGG: sme:SMc00852 transmembrane signal peptide protein YP_003159130.1 PFAM: LemA family protein; KEGG: rlt:Rleg2_0532 LemA family protein YP_003159131.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2- macroglobulin domain protein 2; KEGG: chu:CHU_1193 hypothetical protein YP_003159132.1 TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; Penicillin- binding domain protein; penicillin-binding protein transpeptidase; KEGG: chu:CHU_1192 glycosyltransferase YP_003159133.1 KEGG: dvu:DVU0569 sigma-54 dependent transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATPase AAA; PAS domain containing protein YP_003159134.1 KEGG: cpc:Cpar_0215 hypothetical protein YP_003159135.1 KEGG: gbm:Gbem_0768 hypothetical protein YP_003159136.1 KEGG: pca:Pcar_2854 two component signal transduction protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAC repeat-containing protein YP_003159137.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gsu:GSU3418 sigma-54 dependent DNA-binding response regulator YP_003159138.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_2457 metal dependent phosphohydrolase YP_003159139.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dps:DP0979 methyl-accepting chemotaxis protein YP_003159140.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: gsu:GSU0683 methyl-accepting chemotaxis protein YP_003159141.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: gbm:Gbem_3155 chemotaxis protein CheW YP_003159142.1 KEGG: gur:Gura_2995 sulfate transporter/antisigma- factor antagonist STAS YP_003159143.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvl:Dvul_1541 response regulator receiver protein YP_003159144.1 PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: gsu:GSU1290 chemotaxis protein CheA YP_003159145.1 KEGG: dvl:Dvul_3022 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003159146.1 PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: dde:Dde_0879 two component Fis family transcriptional regulator YP_003159147.1 PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase YP_003159148.1 KEGG: dde:Dde_0877 hypothetical protein YP_003159149.1 PFAM: conserved hypothetical protein; KEGG: dde:Dde_0876 hypothetical protein YP_003159150.1 PFAM: VacJ family lipoprotein; KEGG: dvl:Dvul_0227 VacJ family lipoprotein YP_003159151.1 KEGG: noc:Noc_0978 hypothetical protein YP_003159152.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: sfu:Sfum_0700 phosphate uptake regulator, PhoU YP_003159153.1 KEGG: dvl:Dvul_1910 phosphate ABC transporter, ATPase subunit; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: ATPase AAA YP_003159154.1 KEGG: sfu:Sfum_2891 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003159155.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: dde:Dde_2387 two component transcriptional regulator YP_003159156.1 KEGG: dde:Dde_1628 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; CBS domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003159157.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2418 MATE efflux family protein YP_003159158.1 KEGG: dps:DP3108 hypothetical protein YP_003159159.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: dvl:Dvul_0090 two component, sigma54 specific, Fis family transcriptional regulator YP_003159160.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: dvl:Dvul_0091 integral membrane sensor signal transduction histidine kinase YP_003159161.1 KEGG: dvl:Dvul_0092 response regulator receiver protein; PFAM: peptidase S16 lon domain protein; response regulator receiver; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA YP_003159163.1 KEGG: dvl:Dvul_0093 hypothetical protein YP_003159164.1 TIGRFAM: sulfate transporter; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_3641 sulfate permease YP_003159165.1 KEGG: dvl:Dvul_0094 hypothetical protein YP_003159166.1 PFAM: protein of unknown function DUF81; KEGG: dvl:Dvul_0095 hypothetical protein YP_003159167.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: dvu:DVUA0093 chromate transport family protein YP_003159168.1 KEGG: dvu:DVUA0094 ChrB protein YP_003159169.1 SMART: Rhodanese domain protein; KEGG: sfu:Sfum_0093 rhodanese domain protein YP_003159171.1 PFAM: major facilitator superfamily MFS_1; KEGG: sfu:Sfum_0094 major facilitator superfamily MFS_1 YP_003159172.1 KEGG: cli:Clim_0376 periplasmic phosphate binding protein YP_003159173.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cli:Clim_0377 phosphate ABC transporter, inner membrane subunit PstC YP_003159174.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cli:Clim_0378 phosphate ABC transporter, inner membrane subunit PstA YP_003159175.1 KEGG: dol:Dole_0406 hypothetical protein YP_003159176.1 PFAM: heat shock protein Hsp20; KEGG: afe:Lferr_1743 heat shock protein HSP20 YP_003159177.1 PFAM: phosphate acetyl/butaryl transferase; KEGG: dde:Dde_3129 phosphate butyryltransferase YP_003159178.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_3130 acetolactate synthase, small subunit YP_003159179.1 TIGRFAM: L-threonine 3-dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: pmr:PMI3178 L-threonine 3-dehydrogenase YP_003159180.1 TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: aminotransferase class I and II; glycine hydroxymethyltransferase; aminotransferase class-III; KEGG: aha:AHA_4234 2-amino-3-ketobutyrate coenzyme A ligase YP_003159181.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: pfu:PF1231 AsnC family transcriptional regulator YP_003159182.1 KEGG: sat:SYN_00764 hypothetical protein YP_003159183.1 KEGG: glo:Glov_0605 hypothetical protein YP_003159184.1 PFAM: phosphatidylserine decarboxylase-related; KEGG: gur:Gura_1505 phosphatidylserine decarboxylase-related YP_003159185.1 KEGG: gbm:Gbem_1868 hypothetical protein YP_003159186.1 KEGG: sew:SeSA_A2408 inner membrane protein YohD YP_003159187.1 PFAM: Radical SAM domain protein; KEGG: ter:Tery_4990 radical SAM family protein YP_003159188.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: vei:Veis_3125 histone family protein DNA- binding protein YP_003159189.1 KEGG: dde:Dde_3601 hypothetical protein YP_003159190.1 KEGG: dde:Dde_3600 hypothetical protein YP_003159191.1 KEGG: pin:Ping_2321 HPr kinase YP_003159192.1 PFAM: RimK domain protein ATP-grasp; KEGG: pin:Ping_2322 RimK domain-containing protein ATP-grasp YP_003159193.1 PFAM: PhoU family protein; KEGG: tcx:Tcr_1767 hypothetical protein YP_003159194.1 KEGG: pin:Ping_2318 hypothetical protein YP_003159195.1 KEGG: dvl:Dvul_0169 hypothetical protein YP_003159196.1 KEGG: dvl:Dvul_1908 hypothetical protein YP_003159197.1 PFAM: glycosyl transferase group 1; PHP domain protein; KEGG: dvu:DVU0093 glycosyl transferase domain- containing protein YP_003159198.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: dvl:Dvul_2494 PhoH family protein YP_003159199.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: sat:SYN_01337 DnaK suppressor protein YP_003159200.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: mta:Moth_1096 cobalamin (vitamin B12) biosynthesis CbiX protein YP_003159201.1 KEGG: glo:Glov_3066 hydrogenase accessory protein HypB YP_003159203.1 KEGG: dol:Dole_2809 hypothetical protein YP_003159204.1 PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; KEGG: dvl:Dvul_1658 signal transduction histidine kinase, nitrogen specific, NtrB YP_003159205.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: dvl:Dvul_1657 two component, sigma54 specific, Fis family transcriptional regulator YP_003159206.1 PFAM: UspA domain protein; KEGG: cpb:Cphamn1_1171 UspA domain protein YP_003159207.1 KEGG: dde:Dde_1483 hypothetical protein YP_003159208.1 PFAM: UspA domain protein; KEGG: cpb:Cphamn1_1171 UspA domain protein YP_003159209.1 KEGG: dde:Dde_1483 hypothetical protein YP_003159210.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: pph:Ppha_2834 adenosylmethionine-8-amino-7- oxononanoate aminotransferase YP_003159211.1 TIGRFAM:S-adenosylmethionine/tRNA- ribosyltransferase -isomerase; PFAM: Queuosine biosynthesis protein; KEGG: dde:Dde_0042 S-adenosylmethionine/tRNA ribosyltransferase-isomerase YP_003159212.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0044 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003159213.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dvl:Dvul_0045 2-ketoisovalerate ferredoxin reductase YP_003159214.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dde:Dde_0045 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit YP_003159215.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dde:Dde_0046 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit YP_003159216.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: dvu:DVU0115 shikimate 5-dehydrogenase YP_003159217.1 PFAM: methyladenine glycosylase; KEGG: glo:Glov_0058 DNA-3-methyladenine glycosylase I YP_003159218.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: gbm:Gbem_3877 iron-containing alcohol dehydrogenase YP_003159219.1 KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003159220.1 PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: dde:Dde_3580 peptidoglycan-binding LysM YP_003159221.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: dvl:Dvul_2919 RNA methyltransferase YP_003159222.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: dvl:Dvul_2918 flagellar biosynthetic protein FliQ YP_003159223.1 KEGG: lip:LI0639 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein YP_003159224.1 PFAM: flagellar biosynthesis protein FliO; KEGG: dvl:Dvul_2916 flagellar biosynthesis protein, FliO YP_003159225.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: dde:Dde_3585 surface presentation of antigens (SpoA) protein YP_003159226.1 TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: dde:Dde_2708 flagellar motor switch protein FliM YP_003159227.1 PFAM: flagellar basal body-associated protein FliL; KEGG: dde:Dde_3586 flagellar protein FliL YP_003159228.1 PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3587 chemotaxis protein MotB YP_003159229.1 PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3588 OmpA family protein YP_003159230.1 PFAM: MotA/TolQ/exbB proton channel; KEGG: dde:Dde_3589 chemotaxis protein MotA YP_003159231.1 PFAM: alanine racemase domain protein; KEGG: dvl:Dvul_2910 alanine racemase domain- containing protein YP_003159232.1 TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: dde:Dde_3591 GTP-binding protein Era YP_003159233.1 KEGG: dde:Dde_0106 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein YP_003159234.1 KEGG: dvl:Dvul_0694 hypothetical protein YP_003159235.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_2715 single-stranded-DNA-specific exonuclease RecJ YP_003159236.1 KEGG: sat:SYN_02712 hypothetical protein YP_003159237.1 PFAM: ferredoxin; KEGG: dvl:Dvul_2076 ferredoxin YP_003159238.1 TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dvl:Dvul_1736 selenide, water dikinase YP_003159239.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dvl:Dvul_1737 LysR family transcriptional regulator YP_003159240.1 TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: dde:Dde_2230 50S ribosomal protein L17 YP_003159241.1 KEGG: dde:Dde_2231 DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase alpha subunit domain protein; RNA polymerase dimerisation; SMART: RNA polymerase RpoA/D/Rpb3-type YP_003159242.1 KEGG: dde:Dde_2232 30S ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003159243.1 PFAM: ribosomal protein S11; KEGG: lip:LI0980 30S ribosomal protein S11 YP_003159244.1 PFAM: ribosomal protein S13; KEGG: dvl:Dvul_1742 30S ribosomal protein S13 YP_003159245.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dvl:Dvul_1744 methionine aminopeptidase, type I YP_003159246.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: dde:Dde_2237 preprotein translocase subunit SecY YP_003159247.1 TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; KEGG: dvl:Dvul_1746 50S ribosomal protein L15 YP_003159248.1 TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: dvl:Dvul_1747 50S ribosomal protein L30 YP_003159249.1 TIGRFAM: ribosomal protein S5; PFAM: Ribosomal protein S5 ; ribosomal protein S5 domain protein; KEGG: dvl:Dvul_1748 30S ribosomal protein S5 YP_003159250.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: dde:Dde_2241 50S ribosomal protein L18 YP_003159251.1 PFAM: ribosomal protein L6; KEGG: dvl:Dvul_1750 50S ribosomal protein L6 YP_003159252.1 PFAM: ribosomal protein S8; KEGG: dde:Dde_2243 30S ribosomal protein S8 YP_003159253.1 PFAM: ribosomal protein S14; KEGG: dvl:Dvul_1752 30S ribosomal protein S14 YP_003159254.1 PFAM: ribosomal protein L5; KEGG: dde:Dde_2245 50S ribosomal protein L5 YP_003159255.1 KEGG: dvl:Dvul_1754 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW domain protein YP_003159256.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: dvl:Dvul_1755 50S ribosomal protein L14 YP_003159257.1 PFAM: ribosomal protein S17; KEGG: dde:Dde_2248 30S ribosomal protein S17 YP_003159258.1 TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: dde:Dde_2249 50S ribosomal protein L29 YP_003159259.1 TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16; KEGG: dvl:Dvul_1758 50S ribosomal protein L16 YP_003159260.1 KEGG: dde:Dde_2251 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein YP_003159261.1 TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: lip:LI0965 50S ribosomal protein L22 YP_003159262.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: dvl:Dvul_1761 30S ribosomal protein S19 YP_003159263.1 TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; KEGG: dvl:Dvul_1762 50S ribosomal protein L2 YP_003159264.1 PFAM: Ribosomal protein L25/L23; KEGG: dde:Dde_2255 50S ribosomal protein L23 YP_003159265.1 PFAM: ribosomal protein L4/L1e; KEGG: dvl:Dvul_1764 50S ribosomal protein L4 YP_003159266.1 PFAM: ribosomal protein L3; KEGG: dde:Dde_2257 50S ribosomal protein L3 YP_003159267.1 TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; KEGG: lip:LI0959 30S ribosomal protein S10 YP_003159268.1 TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: dvl:Dvul_0447 elongation factor Tu YP_003159269.1 TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: dde:Dde_2261 elongation factor G YP_003159270.1 TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: lip:LI0943 30S ribosomal protein S7 YP_003159271.1 TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: dvl:Dvul_1770 30S ribosomal protein S12 YP_003159272.1 KEGG: dde:Dde_2998 DNA-directed RNA polymerase, acetylornithine deacetylase; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein YP_003159273.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; KEGG: dvu:DVU2928 DNA-directed RNA polymerase subunit beta YP_003159274.1 TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: dde:Dde_2995 50S ribosomal protein L7/L12 YP_003159275.1 PFAM: ribosomal protein L10; KEGG: dvl:Dvul_0441 50S ribosomal protein L10 YP_003159276.1 TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; KEGG: dvl:Dvul_0442 50S ribosomal protein L1 YP_003159277.1 KEGG: dvl:Dvul_0443 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11 YP_003159278.1 KEGG: dde:Dde_2991 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein; KOW domain protein YP_003159279.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: dde:Dde_2990 preprotein translocase subunit SecE YP_003159280.1 TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: dvl:Dvul_0447 elongation factor Tu YP_003159281.1 TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; KEGG: dde:Dde_2986 UDP-3-O-[3-hydroxymyristoyl] N- acetylglucosamine deacetylase YP_003159282.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: dde:Dde_2985 HemK family modification methylase YP_003159283.1 TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: sfu:Sfum_1713 peptide chain release factor 1 YP_003159284.1 TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: dde:Dde_2982 50S ribosomal protein L31 YP_003159285.1 PFAM: CoA-binding domain protein; Rex DNA-binding domain protein; KEGG: dde:Dde_2702 redox-sensing transcriptional repressor Rex YP_003159286.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: dvl:Dvul_2067 ATP synthase F0, C subunit YP_003159287.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: dvl:Dvul_2066 ATP synthase F0, A subunit YP_003159288.1 KEGG: dde:Dde_2699 hypothetical protein YP_003159289.1 KEGG: dde:Dde_2698 ATP synthase protein I YP_003159290.1 PFAM: peptidase S16 lon domain protein; KEGG: dvu:DVU1893 ATP-dependent protease YP_003159291.1 PFAM: outer membrane efflux protein; KEGG: dde:Dde_3627 outer membrane efflux protein YP_003159294.1 KEGG: sth:STH1403 haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; metal-dependent phosphohydrolase HD sub domain; sucrose-6F-phosphate phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region YP_003159298.1 KEGG: dde:Dde_0206 hypothetical protein YP_003159299.1 KEGG: dde:Dde_3490 fructose-bisphosphate aldolase; TIGRFAM: predicted phospho-2-dehydro-3- deoxyheptonate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase YP_003159300.1 PFAM: 3-dehydroquinate synthase; KEGG: dvu:DVU0461 3-dehydroquinate synthase YP_003159301.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; Chorismate mutase; KEGG: dvu:DVU0462 chorismate mutase/prephenate dehydratase YP_003159302.1 KEGG: dvu:DVU0463 3-phosphoshikimate 1- carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase) YP_003159303.1 PFAM: Prephenate dehydrogenase; KEGG: dvl:Dvul_2473 prephenate dehydrogenase YP_003159304.1 PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; KEGG: dde:Dde_3484 anthranilate synthase, component I YP_003159305.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: dvu:DVU0466 anthranilate synthase, glutamine amidotransferase component YP_003159306.1 KEGG: dvu:DVU0467 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like YP_003159307.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: dvl:Dvul_2469 indole-3-glycerol-phosphate synthase YP_003159308.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: amu:Amuc_1534 phosphoribosylanthranilate isomerase YP_003159309.1 KEGG: swi:Swit_2726 tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003159310.1 KEGG: pca:Pcar_2241 tryptophan synthase subunit alpha; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain YP_003159311.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: dde:Dde_0104 L-glutamine synthetase YP_003159312.1 PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: gsu:GSU3396 GntR family transcriptional regulator YP_003159313.1 TIGRFAM: choline dehydrogenase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: stp:Strop_1639 choline dehydrogenase YP_003159314.1 TIGRFAM: betaine aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: bld:BLi03270 GbsA YP_003159315.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pap:PSPA7_6163 hypothetical protein YP_003159316.1 PFAM: zinc/iron permease; KEGG: paa:Paes_1320 zinc/iron permease YP_003159317.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; KEGG: dol:Dole_0859 CBS domain-containing protein YP_003159318.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: gur:Gura_0468 regulatory protein, ArsR YP_003159319.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: amr:AM1_6357 signal transduction histidine kinase YP_003159320.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvl:Dvul_1780 response regulator receiver protein YP_003159321.1 KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_003159322.1 PFAM: protein of unknown function DUF554; KEGG: dvl:Dvul_1184 hypothetical protein YP_003159323.1 KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_003159324.1 TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; KEGG: dde:Dde_0502 glutamine--fructose-6-phosphate transaminase YP_003159325.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: dde:Dde_0504 Ham1-like protein YP_003159326.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_2459 ThiF protein YP_003159327.1 PFAM: thiamineS protein; KEGG: dde:Dde_2458 hypothetical protein YP_003159328.1 PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; Fe-S cluster domain protein; KEGG: dvl:Dvul_2363 molybdopterin-guanine dinucleotide biosynthesis MobB region YP_003159329.1 KEGG: dvl:Dvul_0027 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein YP_003159330.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); GAD domain protein; nucleic acid binding OB-fold tRNA/helicase- type; KEGG: dde:Dde_0012 aspartyl-tRNA synthetase YP_003159331.1 KEGG: dde:Dde_0013 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_003159332.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: dde:Dde_0014 methionyl-tRNA formyltransferase YP_003159333.1 PFAM: protein of unknown function DUF116; KEGG: dvl:Dvul_0031 hypothetical protein YP_003159334.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: dde:Dde_0017 sun protein YP_003159335.1 PFAM: PhnA protein; KEGG: plu:plu1533 hypothetical protein YP_003159337.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: dvl:Dvul_0072 dihydroorotate dehydrogenase family protein YP_003159338.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_0057 dihydroorotate oxidase B, electron transfer subunit YP_003159339.1 PFAM: SMC domain protein; KEGG: dde:Dde_2596 DNA repair protein RecN YP_003159340.1 KEGG: glo:Glov_3362 glycosyl transferase family 2 YP_003159341.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: ade:Adeh_3385 ABC transporter, ATPase subunit YP_003159342.1 PFAM: YceI family protein; KEGG: gme:Gmet_3449 YceI YP_003159343.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: acl:ACL_1243 short chain dehydrogenase/reductase family protein YP_003159344.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein; KEGG: pen:PSEEN4650 hypothetical protein YP_003159345.1 KEGG: sfr:Sfri_1952 hypothetical protein YP_003159346.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: shm:Shewmr7_3547 response regulator receiver sensor signal transduction histidine kinase YP_003159347.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvl:Dvul_0160 response regulator receiver protein YP_003159348.1 KEGG: aoe:Clos_0337 apurinic endonuclease Apn1; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2 YP_003159349.1 PFAM: chemotaxis sensory transducer; Peptidase S7 flavivirus helicase (NS3); histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dde:Dde_0703 methyl-accepting chemotaxis sensory transducer YP_003159350.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1075 iron-sulfur cluster-binding protein YP_003159351.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: dvl:Dvul_2794 molybdopterin oxidoreductase YP_003159352.1 PFAM: NLP/P60 protein; KEGG: dvl:Dvul_2088 NLP/P60 protein YP_003159353.1 PFAM: protein of unknown function DUF161; KEGG: dvl:Dvul_0536 hypothetical protein YP_003159354.1 KEGG: dvl:Dvul_2560 CoA-binding domain-containing protein YP_003159355.1 PFAM: Class I peptide chain release factor; KEGG: mpo:Mpop_3428 class I peptide chain release factor YP_003159356.1 KEGG: dde:Dde_2018 HesB-like domain-containing protein YP_003159357.1 KEGG: glo:Glov_1844 diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GAF domain protein; GGDEF domain containing protein; type IV pilus assembly PilZ; SMART: GAF domain protein; GGDEF domain containing protein YP_003159358.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: dde:Dde_1438 hypothetical protein YP_003159359.1 KEGG: dvl:Dvul_0923 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_003159360.1 PFAM: Peptidase M23; KEGG: dvl:Dvul_0922 peptidase M23B YP_003159361.1 PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; KEGG: dvl:Dvul_0921 HhH-GPD family protein YP_003159362.1 PFAM: ribosomal L11 methyltransferase; KEGG: dvl:Dvul_0920 ribosomal L11 methyltransferase YP_003159363.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: dvl:Dvul_0914 acetylornithine aminotransferase YP_003159364.1 KEGG: dde:Dde_1425 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_003159365.1 KEGG: dde:Dde_1424 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003159366.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dvl:Dvul_0454 hemolysin A YP_003159367.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dvu:DVU2355 tRNA (guanosine-2'-O-)- methyltransferase YP_003159368.1 KEGG: dde:Dde_2726 chorismate synthase; TIGRFAM: chorismate synthase; PFAM: chorismate synthase YP_003159369.1 PFAM: protein of unknown function DUF218; KEGG: abu:Abu_0553 hypothetical protein YP_003159370.1 PFAM: Rhomboid family protein; KEGG: gur:Gura_0967 rhomboid family protein YP_003159371.1 KEGG: chu:CHU_1412 hypothetical protein YP_003159372.1 PFAM: GrpE protein; KEGG: lip:LI1048 molecular chaperone GrpE (heat shock protein) YP_003159373.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: dde:Dde_1026 heat-inducible transcription repressor HrcA YP_003159374.1 KEGG: dde:Dde_2183 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; NAD- dependent epimerase/dehydratase YP_003159375.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: dvl:Dvul_1704 dTDP-glucose 4,6-dehydratase YP_003159376.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dvl:Dvul_1004 tRNA/rRNA methyltransferase (SpoU) YP_003159377.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: dvl:Dvul_1005 cobalamin biosynthesis protein CobD YP_003159378.1 PFAM: Protein of unknown function methylase KEGG: pcu:pc1793 hypothetical protein YP_003159379.1 PFAM: GCN5-related N-acetyltransferase; KEGG: afw:Anae109_0715 GCN5-related N- acetyltransferase YP_003159380.1 KEGG: dvl:Dvul_0926 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding YP_003159381.1 KEGG: dvl:Dvul_0925 nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase YP_003159382.1 PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: dde:Dde_3737 hypothetical protein YP_003159383.1 KEGG: dde:Dde_3736 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_003159384.1 KEGG: dvl:Dvul_2166 chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70 YP_003159385.1 KEGG: dde:Dde_1022 hypothetical protein YP_003159386.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: dde:Dde_1021 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C YP_003159387.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; KEGG: dde:Dde_1020 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A YP_003159388.1 KEGG: dvu:DVU0807 tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase YP_003159389.1 KEGG: dvl:Dvul_2087 RNA modification protein; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_003159390.1 KEGG: dol:Dole_1913 GTP-binding protein YP_003159391.1 PFAM: domain of unknown function DUF1732; YicC domain protein; KEGG: dde:Dde_2721 hypothetical protein YP_003159392.1 PFAM: protein of unknown function DUF370; KEGG: dde:Dde_2720 hypothetical protein YP_003159393.1 KEGG: dvl:Dvul_2084 guanylate kinase; TIGRFAM: guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region YP_003159394.1 KEGG: dde:Dde_2718 orotidine-5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_003159395.1 SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2717 TPR repeat-containing protein YP_003159396.1 PFAM: regulatory protein LuxR; type IV pilus assembly PilZ; SMART: regulatory protein LuxR; KEGG: mgm:Mmc1_3704 transcriptional regulator, LuxR family YP_003159397.1 KEGG: dvl:Dvul_1879 hypothetical protein YP_003159398.1 PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_1261 DNA repair photolyase-like YP_003159399.1 KEGG: dol:Dole_2368 nuclease YP_003159400.1 TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: dde:Dde_2741 elongation factor G YP_003159402.1 PFAM: PfkB domain protein; KEGG: mfa:Mfla_2609 PfkB YP_003159403.1 KEGG: mgm:Mmc1_3516 sucrose-phosphate synthase; TIGRFAM: sucrose-phosphate synthase; PFAM: sucrose-6F-phosphate phosphohydrolase; glycosyl transferase group 1 YP_003159404.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; KEGG: noc:Noc_2718 HAD family hydrolase YP_003159405.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tcx:Tcr_1797 alpha amylase, catalytic region YP_003159406.1 KEGG: neu:NE1198 hypothetical protein YP_003159407.1 KEGG: dau:Daud_1123 hypothetical protein YP_003159408.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: pca:Pcar_3011 phosphoenolpyruvate synthase YP_003159409.1 PFAM: UbiA prenyltransferase; KEGG: scl:sce0081 hypothetical protein YP_003159410.1 PFAM: histidine triad (HIT) protein; KEGG: mca:MCA0687 hypothetical protein YP_003159411.1 PFAM: extracellular solute-binding protein family 5; KEGG: ckl:CKL_1311 hypothetical protein YP_003159412.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_4025 binding-protein-dependent transporter inner membrane protein YP_003159413.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cko:CKO_01522 ATP-dependent peptide transporter membrane subunit YP_003159414.1 KEGG: dol:Dole_0941 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003159415.1 KEGG: chy:CHY_1127 oligopeptide/dipeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003159416.1 PFAM: peptidase M55 D-aminopeptidase; KEGG: aoe:Clos_1006 peptidase M55 D-aminopeptidase YP_003159417.1 PFAM: ethanolamine ammonia-lyase light chain; KEGG: cak:Caul_3530 ethanolamine ammonia-lyase YP_003159418.1 PFAM: ethanolamine ammonia lyase large subunit; KEGG: cak:Caul_3531 ethanolamine ammonia lyase large subunit YP_003159419.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: dde:Dde_2559 beta-N-acetylhexosaminidase YP_003159420.1 PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pmy:Pmen_0674 TRAP C4-dicarboxylate transport system permease DctM subunit YP_003159421.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pmy:Pmen_0673 tripartite ATP-independent periplasmic transporter DctQ YP_003159422.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: oan:Oant_3880 TRAP dicarboxylate transporter- DctP subunit YP_003159423.1 PFAM: basic membrane lipoprotein; KEGG: cya:CYA_1584 Tat (twin-arginine translocation) pathway signal sequence/basic membrane protein YP_003159424.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: rru:Rru_A2785 ABC transporter component YP_003159425.1 PFAM: inner-membrane translocator; KEGG: cya:CYA_1582 carbohydrate ABC transporter permease YP_003159426.1 PFAM: inner-membrane translocator; KEGG: cyb:CYB_0388 carbohydrate ABC transporter permease YP_003159427.1 PFAM: Amidohydrolase 3; KEGG: azo:azo3769 cytosine deaminase YP_003159428.1 PFAM: plasmid stabilization system; KEGG: pmy:Pmen_2126 plasmid stabilization system protein YP_003159429.1 TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: mca:MCA2652 hypothetical protein YP_003159430.1 KEGG: rme:Rmet_5484 hypothetical protein YP_003159431.1 PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_2829 hypothetical protein YP_003159432.1 TIGRFAM: hybrid cluster protein; PFAM: Prismane; KEGG: sfu:Sfum_3446 hydroxylamine reductase YP_003159433.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: sat:SYN_02214 response regulator YP_003159434.1 KEGG: dol:Dole_0426 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003159435.1 KEGG: tpd:Teth39_0272 hypothetical protein YP_003159436.1 KEGG: ypb:YPTS_1283 hypothetical protein YP_003159437.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_1146 hypothetical protein YP_003159438.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_1840 multiple antibiotic resistance (MarC)-related proteins YP_003159439.1 KEGG: gsu:GSU2517 rhodanese-like domain/cysteine- rich domain-containing protein YP_003159440.1 PFAM: glycosyl transferase group 1; KEGG: swi:Swit_4009 glycosyl transferase, group 1 YP_003159441.1 KEGG: acr:Acry_3040 S-isoprenylcysteine methyltransferase-like protein YP_003159442.1 PFAM: acriflavin resistance protein; KEGG: gsu:GSU2782 AcrB/AcrD/AcrF family protein YP_003159443.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: hemolysin D; KEGG: pca:Pcar_2243 RND family efflux transporter MFP subunit YP_003159444.1 PFAM: Lipocalin family protein; KEGG: dol:Dole_1202 lipocalin family protein YP_003159445.1 KEGG: sfu:Sfum_1195 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat- containing protein YP_003159446.1 PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: dde:Dde_0590 cardiolipin synthetase 2 YP_003159448.1 KEGG: dde:Dde_1520 hypothetical protein YP_003159449.1 TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: dde:Dde_0762 dissimilatory sulfite reductase, gamma subunit YP_003159450.1 KEGG: mem:Memar_1054 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77 YP_003159451.1 KEGG: tye:THEYE_A0081 1,4-alpha-glucan branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003159453.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_3089 radical SAM domain protein YP_003159454.1 KEGG: dvu:DVU3150 30S ribosomal protein S1; TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein YP_003159456.1 KEGG: dde:Dde_0506 hypothetical protein; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003159457.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvu:DVU0394 radical SAM domain-containing protein YP_003159458.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: dde:Dde_0517 histone-like DNA-binding protein YP_003159459.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: dvl:Dvul_2537 rare lipoprotein A YP_003159460.1 KEGG: sfu:Sfum_0747 hypothetical protein YP_003159461.1 KEGG: dvl:Dvul_1877 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase YP_003159462.1 PFAM: Chloride channel core; CBS domain containing protein; KEGG: dde:Dde_3504 chloride channel family protein YP_003159463.1 KEGG: dde:Dde_3505 riboflavin kinase / FMN adenylyltransferase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase YP_003159464.1 KEGG: rce:RC1_3208 ABC transporter, periplasmic substrate-binding protein YP_003159465.1 PFAM: CBS domain containing protein; protein of unknown function DUF190; SMART: CBS domain containing protein; KEGG: rrs:RoseRS_2494 CBS domain-containing protein YP_003159466.1 KEGG: nth:Nther_1402 MotA/TolQ/exbB proton channel YP_003159467.1 PFAM: OmpA/MotB domain protein; KEGG: mta:Moth_0458 OmpA/MotB YP_003159468.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvu:DVU0305 ferredoxin II YP_003159469.1 KEGG: sgo:SGO_0092 hypothetical protein YP_003159470.1 KEGG: pma:Pro1264 hypothetical protein YP_003159471.1 KEGG: mxa:MXAN_5581 lipoprotein YP_003159472.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sfu:Sfum_3317 drug resistance transporter, EmrB/QacA subfamily YP_003159473.1 PFAM: hemolysin D; KEGG: gme:Gmet_1375 hemolysin D YP_003159474.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein; KEGG: dde:Dde_3603 DEAD/DEAH box helicase-like YP_003159475.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: dde:Dde_3599 two component Fis family transcriptional regulator YP_003159476.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: histidine kinase A domain protein; ATP- binding region ATPase domain protein; KEGG: dvl:Dvul_0167 integral membrane sensor signal transduction histidine kinase YP_003159477.1 PFAM: phosphoglucose isomerase (PGI); KEGG: cts:Ctha_1613 glucose-6-phosphate isomerase YP_003159478.1 PFAM: aminotransferase class I and II; KEGG: dde:Dde_3596 L-aspartate aminotransferase YP_003159479.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: gur:Gura_3899 metal dependent phosphohydrolase YP_003159480.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: ATPase AAA; KEGG: gbm:Gbem_0368 type II secretion system protein E YP_003159481.1 PFAM: type IV pilus assembly PilZ; KEGG: dol:Dole_3213 type IV pilus assembly PilZ YP_003159482.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: dvl:Dvul_0713 MerR family transcriptional regulator YP_003159483.1 KEGG: dde:Dde_2634 phenylalanyl-tRNA synthetase beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit YP_003159484.1 TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: dvl:Dvul_0711 phenylalanyl-tRNA synthetase, alpha subunit YP_003159485.1 TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: dvl:Dvul_0710 50S ribosomal protein L20 YP_003159486.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: pca:Pcar_1420 ribosomal protein L35 YP_003159487.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: dvl:Dvul_0708 translation initiation factor IF-3 YP_003159488.1 KEGG: dde:Dde_2639 threonyl-tRNA synthetase / Ser- tRNA(Thr) hydrolase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD YP_003159489.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: response regulator receiver; protein phosphatase 2C domain protein; KEGG: dol:Dole_0140 response regulator receiver protein YP_003159490.1 KEGG: dol:Dole_0141 anti-sigma regulatory factor, serine/threonine protein kinase YP_003159491.1 PFAM: protein of unknown function UPF0047; KEGG: cth:Cthe_0103 hypothetical protein YP_003159492.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: dvu:DVU3159 glycerol-3-phosphate dehydrogenase (NAD(P)+) YP_003159493.1 KEGG: dde:Dde_3179 AsnC family transcriptional regulator YP_003159494.1 TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: dvl:Dvul_0218 glutamate-1-semialdehyde-2,1- aminomutase YP_003159495.1 PFAM: cytochrome c class III; KEGG: dvl:Dvul_0760 cytochrome c, class III YP_003159496.1 KEGG: dvl:Dvul_0214 CheA signal transduction histidine kinases YP_003159497.1 KEGG: dde:Dde_3184 hypothetical protein YP_003159498.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dvl:Dvul_0212 ubiquinone/menaquinone biosynthesis methyltransferases YP_003159499.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; KEGG: dde:Dde_3187 UDP-glucose/GDP-mannose dehydrogenase family protein YP_003159500.1 PFAM: purine or other phosphorylase family 1; KEGG: dde:Dde_3188 hypothetical protein YP_003159501.1 PFAM: protein of unknown function DUF191; KEGG: sma:SAV_3906 hypothetical protein YP_003159502.1 PFAM: Polyprenyl synthetase; KEGG: dvu:DVU3179 octaprenyl-diphosphate synthase YP_003159503.1 KEGG: dvl:Dvul_0207 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Metal- dependent hydrolase HDOD; SMART: GGDEF domain containing protein; PAS domain containing protein YP_003159504.1 PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: dde:Dde_3191 phosphoribosylformylglycinamidine synthase YP_003159505.1 KEGG: dol:Dole_2125 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; HpcH/HpaI aldolase; Pyruvate kinase alpha/beta YP_003159506.1 PFAM: Carboxylyase-related protein; KEGG: dvu:DVU2320 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein YP_003159507.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: dvl:Dvul_1845 FxsA cytoplasmic membrane protein YP_003159508.1 KEGG: hha:Hhal_1598 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD- superfamily subfamily IB hydrolase, TIGR01490; HAD- superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase type 3 YP_003159509.1 KEGG: dde:Dde_0177 DNA polymerase III, delta prime subunit YP_003159510.1 KEGG: dvl:Dvul_0183 adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase YP_003159511.1 KEGG: dde:Dde_0174 phosphoribosylaminoimidazolecarboxamide formyltransferase; PFAM: AICARFT/IMPCHase bienzyme formylation region; SMART: AICARFT/IMPCHase bienzyme formylation region YP_003159512.1 PFAM: ribonuclease II; KEGG: dde:Dde_0173 RNB-like family protein YP_003159513.1 PFAM: protein of unknown function DUF205; KEGG: dvl:Dvul_0178 hypothetical protein YP_003159514.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: dvl:Dvul_0152 small GTP-binding protein YP_003159515.1 PFAM: MGS domain protein; KEGG: dvl:Dvul_0153 phosphoribosylaminoimidazolecarboxamide formyltransferase YP_003159516.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_0357 TPR repeat-containing protein YP_003159517.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: dde:Dde_0356 flagellar basal body rod protein FlgB YP_003159518.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: dvl:Dvul_2666 flagellar basal-body rod protein FlgC YP_003159519.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: dvl:Dvul_2667 flagellar hook-basal body complex subunit FliE YP_003159520.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: dvl:Dvul_2668 flagellar M-ring protein FliF YP_003159521.1 TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: dvl:Dvul_2669 flagellar motor switch protein FliG YP_003159522.1 PFAM: flagellar assembly protein FliH; KEGG: dvl:Dvul_2670 flagellar assembly protein FliH YP_003159523.1 KEGG: dvl:Dvul_2671 flagellar protein export ATPase FliI; TIGRFAM: ATPase FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: ATPase AAA YP_003159524.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: gbm:Gbem_0904 type II secretion system protein E YP_003159525.1 TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; KEGG: cts:Ctha_1939 RfaE bifunctional protein YP_003159526.1 KEGG: dvl:Dvul_2535 hypothetical protein YP_003159527.1 KEGG: sfu:Sfum_0468 lipoprotein YP_003159528.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: dde:Dde_0039 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase YP_003159530.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; short- chain dehydrogenase/reductase SDR; KEGG: dde:Dde_0033 NAD-dependent epimerase/dehydratase family protein YP_003159531.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pca:Pcar_3139 partition protein, Par-like YP_003159532.1 KEGG: dvl:Dvul_0036 hypothetical protein YP_003159533.1 KEGG: mta:Moth_2515 chromosome segregation DNA- binding protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_003159534.1 PFAM: PfkB domain protein; KEGG: dde:Dde_0028 D-alpha,beta-D-heptose 7- phosphate 1-kinase YP_003159535.1 KEGG: dvu:DVU0400 hypothetical protein YP_003159536.1 KEGG: dde:Dde_1358 hypothetical protein YP_003159537.1 KEGG: dvl:Dvul_1829 metal dependent phosphohydrolase; PFAM: GlnD PII-uridylyltransferase; metal-dependent phosphohydrolase HD sub domain; amino acid-binding ACT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_003159538.1 PFAM: nitrogen regulatory protein P-II; KEGG: dde:Dde_2310 nitrogen regulatory protein P-II (GlnB, GlnK) YP_003159539.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dvu:DVU1231 ammonium transporter YP_003159540.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dde:Dde_3492 ammonium transporter YP_003159541.1 PFAM: nitrogen regulatory protein P-II; KEGG: dde:Dde_3493 nitrogen regulatory protein P-II YP_003159542.1 PFAM: Radical SAM domain protein; KEGG: ppd:Ppro_0838 radical SAM domain-containing protein YP_003159543.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: dde:Dde_0157 GntR family transcriptional regulator YP_003159544.1 PFAM: AzlC family protein; KEGG: dps:DP2465 branched chain amino acid ABC transporter permease YP_003159545.1 PFAM: branched-chain amino acid transport; KEGG: dps:DP2464 hypothetical protein YP_003159546.1 PFAM: aminotransferase class I and II; KEGG: rci:RRC4 aminotransferase YP_003159547.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: hemolysin D; KEGG: gme:Gmet_3128 hemolysin D YP_003159548.1 PFAM: acriflavin resistance protein; KEGG: sus:Acid_4151 acriflavin resistance protein YP_003159549.1 SMART: PUA domain containing protein; KEGG: shn:Shewana3_0977 SAM-dependent methyltransferase YP_003159550.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: ppd:Ppro_1236 TonB family protein YP_003159551.1 KEGG: mhu:Mhun_2049 hypothetical protein YP_003159552.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: dde:Dde_1253 malate dehydrogenase YP_003159553.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: dvl:Dvul_0124 tartrate/fumarate subfamily Fe- S type hydro-lyase beta subunit YP_003159554.1 KEGG: dvl:Dvul_0125 fumarate hydratase; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region YP_003159555.1 KEGG: dvu:DVU3263 fumarate reductase iron-sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin YP_003159556.1 KEGG: dde:Dde_1257 fumarate reductase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003159557.1 PFAM: fumarate reductase respiratory complex transmembrane subunit; KEGG: sfu:Sfum_2000 fumarate reductase respiratory complex, transmembrane subunit YP_003159558.1 TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: dde:Dde_1313 heavy metal translocating P-type ATPase YP_003159559.1 KEGG: dde:Dde_2455 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: Metal-dependent hydrolase HDOD; metal- dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003159560.1 KEGG: kra:Krad_2018 MerR family transcriptional regulator YP_003159561.1 KEGG: dar:Daro_2854 hypothetical protein YP_003159562.1 TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: gbm:Gbem_1176 alanine dehydrogenase YP_003159563.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: mbu:Mbur_1144 ABC transporter, ATPase subunit YP_003159564.1 PFAM: conserved hypothetical protein; KEGG: mca:MCA0169 ABC transporter, permease protein YP_003159565.1 PFAM: protein of unknown function DUF486; KEGG: dol:Dole_0858 hypothetical protein YP_003159566.1 PFAM: nitroreductase; KEGG: atc:AGR_C_21 hypothetical protein YP_003159567.1 KEGG: hmo:HM1_0011 hypothetical protein YP_003159568.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rso:RSc0073 transporter transmembrane protein YP_003159569.1 PFAM: Patatin; KEGG: afe:Lferr_0830 patatin YP_003159570.1 PFAM: peptidase M16 domain protein; KEGG: eca:ECA0994 protease III precursor YP_003159571.1 PFAM: Radical SAM domain protein; KEGG: tye:THEYE_A0894 cofactor modifying protein YP_003159572.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dvu:DVU0374 pyruvate ferredoxin/flavodoxin oxidoreductase family protein YP_003159574.1 KEGG: ppw:PputW619_0139 phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp YP_003159575.1 KEGG: rrs:RoseRS_1821 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase YP_003159576.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: nmu:Nmul_A1110 LysR family transcriptional regulator YP_003159577.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: pmn:PMN2A_1094 TPR repeat-containing protein YP_003159578.1 KEGG: dvu:DVU0114 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain YP_003159579.1 PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: dde:Dde_3567 phosphoribosyl-AMP cyclohydrolase YP_003159580.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: dvl:Dvul_0461 radical SAM protein YP_003159581.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_2966 HD domain-containing protein YP_003159582.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: sat:SYN_02530 two-component response regulator YP_003159583.1 KEGG: dvl:Dvul_0463 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3 YP_003159584.1 TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: dvu:DVU2901 aspartate carbamoyltransferase catalytic subunit YP_003159585.1 KEGG: dde:Dde_0004 DNA gyrase subunit A; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A YP_003159586.1 KEGG: dde:Dde_0003 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein YP_003159587.1 KEGG: dde:Dde_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain YP_003159588.1 PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: Chromosomal replication initiator DnaA domain; ATPase AAA; KEGG: dde:Dde_0001 chromosomal replication initiator protein DnaA YP_003159589.1 PFAM: protein of unknown function DUF39; KEGG: dvl:Dvul_0430 hypothetical protein YP_003159590.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DP1667 iron-sulfur cluster-binding protein YP_003159591.1 KEGG: dvl:Dvul_0428 hypothetical protein YP_003159592.1 TIGRFAM: regulatory protein, FmdB family; KEGG: dde:Dde_3010 hypothetical protein YP_003159593.1 TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: dvl:Dvul_0426 adenylosuccinate lyase YP_003159594.1 KEGG: dde:Dde_3012 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003159595.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dvl:Dvul_0424 ErfK/YbiS/YcfS/YnhG family protein YP_003159596.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: dvu:DVU0538 AP endonuclease YP_003159597.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: pna:Pnap_3262 filamentation induced by cAMP protein Fic YP_003159598.1 KEGG: dde:Dde_3122 dolichyl-phosphate-mannose- protein mannosyltransferase family protein YP_003159599.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: dde:Dde_0120 ribosomal large subunit pseudouridine synthase C YP_003159600.1 PFAM: Fmu (Sun) domain protein; KEGG: dde:Dde_0122 NOL1/NOP2/sun family protein YP_003159601.1 PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; KEGG: dde:Dde_3502 fructose-bisphosphate aldolase YP_003159602.1 PFAM: Methyltransferase type 11; Methionine biosynthesis MetW protein; Methyltransferase type 12; KEGG: dvl:Dvul_0026 methyltransferase type 11 YP_003159603.1 KEGG: dvl:Dvul_0024 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_003159604.1 PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0115 cell division protein FtsX YP_003159605.1 KEGG: dde:Dde_0114 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: ATPase AAA YP_003159606.1 PFAM: response regulator receiver; TPR repeat- containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: response regulator receiver; Tetratricopeptide domain protein; KEGG: cvi:CV_3448 chemotaxis regulator protein CheY YP_003159607.1 PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; KEGG: slo:Shew_0907 PAS/PAC sensor hybrid histidine kinase YP_003159608.1 TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; KEGG: dvl:Dvul_0018 ribonucleotide-diphosphate reductase subunit alpha YP_003159609.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: dde:Dde_2693 glucose-1-phosphate thymidylyltransferase YP_003159610.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: dvl:Dvul_2017 molybdenum cofactor synthesis domain-containing protein YP_003159611.1 PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pca:Pcar_2146 two component signal transduction histidine kinase YP_003159612.1 PFAM: UvrD/REP helicase; KEGG: dde:Dde_3499 ATP-dependent DNA helicase UvrD YP_003159613.1 KEGG: dvu:DVU0455 hypothetical protein YP_003159614.1 PFAM: cobalbumin biosynthesis protein; KEGG: dde:Dde_3495 adenosylcobinamide kinase YP_003159615.1 PFAM: phosphoesterase RecJ domain protein; KEGG: dvl:Dvul_2480 phosphoesterase domain- containing protein YP_003159616.1 KEGG: dde:Dde_3450 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; Helix-hairpin-helix domain protein class 2 YP_003159617.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dvu:DVU0494 aminotransferase, class V YP_003159618.1 PFAM: Domain of unknown function DUF1844; KEGG: dvl:Dvul_2448 hypothetical protein YP_003159619.1 KEGG: dvl:Dvul_2449 N-acetyl-gamma-glutamyl- phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_003159620.1 PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein; KEGG: dvl:Dvul_2451 diguanylate phosphodiesterase YP_003159621.1 PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein; KEGG: dvl:Dvul_2451 diguanylate phosphodiesterase YP_003159622.1 PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: dvu:DVU1263 type IV prepilin-like proteins leader peptidase YP_003159623.1 KEGG: dde:Dde_2681 hypothetical protein YP_003159624.1 KEGG: dvl:Dvul_2679 chemotaxis protein Chex YP_003159625.1 PFAM: Hpt domain protein; KEGG: ppr:PBPRA1232 sensor protein TorS YP_003159626.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_1193 ATPase YP_003159627.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dde:Dde_1192 cobalt ABC transporter, permease protein YP_003159628.1 KEGG: dde:Dde_1191 hypothetical protein YP_003159629.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dde:Dde_1190 cobalt transport protein CbiM YP_003159630.1 KEGG: dde:Dde_1189 hypothetical protein YP_003159631.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein; KEGG: cbb:CLD_2860 DEAD-box ATP dependent DNA helicase YP_003159632.1 KEGG: hch:HCH_02106 response regulator; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE4 domain protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein YP_003159633.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: aha:AHA_3853 amino acid transporter LysE YP_003159634.1 PFAM: t-RNA-binding domain protein; KEGG: dge:Dgeo_0786 t-RNA-binding region YP_003159635.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cvi:CV_1361 hypothetical protein YP_003159636.1 KEGG: dde:Dde_1612 hypothetical protein YP_003159637.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dvu:DVU2802 GntR family transcriptional regulator YP_003159639.1 KEGG: sfu:Sfum_3608 hypothetical protein YP_003159640.1 KEGG: sfu:Sfum_3609 metallo-beta-lactamase family protein YP_003159641.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: sfu:Sfum_3612 cobalamin synthesis protein, P47K YP_003159642.1 PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_1174 glycosyl transferase family protein YP_003159643.1 PFAM: lipid A biosynthesis domain protein; KEGG: gsu:GSU2554 hypothetical protein YP_003159644.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: dde:Dde_0373 phosphoesterase, PA-phosphatase related YP_003159645.1 TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: ngk:NGK_2661 50S ribosomal protein L34 YP_003159646.1 TIGRFAM: ribonuclease P protein component; KEGG: dvu:DVU1075 ribonuclease P protein component YP_003159647.1 PFAM: protein of unknown function DUF37; KEGG: syn:ssl0331 hypothetical protein YP_003159648.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: dvl:Dvul_1917 60 kDa inner membrane insertion protein YP_003159649.1 PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: lip:LI1071 RNA-binding protein YP_003159650.1 TIGRFAM: tRNA modification GTPase TrmE; small GTP- binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: dde:Dde_2392 tRNA modification GTPase TrmE YP_003159651.1 KEGG: dde:Dde_2598 ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; Cold shock protein YP_003159652.1 KEGG: dvu:DVU2468 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_003159653.1 PFAM: protein of unknown function UPF0005; KEGG: dvl:Dvul_0772 hypothetical protein YP_003159654.1 KEGG: pca:Pcar_2144 pilus-related protein YP_003159655.1 KEGG: dvl:Dvul_2560 CoA-binding domain-containing protein YP_003159656.1 KEGG: gur:Gura_1181 hypothetical protein YP_003159657.1 TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_2823 acetyl-coenzyme A synthetase YP_003159658.1 PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: dvl:Dvul_2221 response regulator receiver protein YP_003159659.1 TIGRFAM: GTP-binding protein LepA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; GTP- binding protein LepA domain protein; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: dvl:Dvul_2261 GTP-binding protein LepA YP_003159660.1 KEGG: dvl:Dvul_2260 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_003159661.1 KEGG: dvl:Dvul_2256 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003159662.1 PFAM: peptidase M48 Ste24p; KEGG: dol:Dole_2972 peptidase M48 Ste24p YP_003159663.1 PFAM: MscS Mechanosensitive ion channel; KEGG: dvl:Dvul_1587 MscS mechanosensitive ion channel YP_003159664.1 KEGG: spe:Spro_2554 hypothetical protein YP_003159665.1 KEGG: dol:Dole_0624 hypothetical protein YP_003159666.1 PFAM: TatD-related deoxyribonuclease; KEGG: tatD-related deoxyribonuclease family protein ; K03424 Mg-dependent DNase YP_003159667.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: fph:Fphi_1624 ThiF family protein YP_003159668.1 KEGG: gsu:GSU0198 hypothetical protein YP_003159669.1 TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; NADPH- dependent FMN reductase; KEGG: gsu:GSU0804 TrpR binding protein WrbA YP_003159670.1 KEGG: dvl:Dvul_1904 thiamine biosynthesis protein YP_003159671.1 KEGG: dde:Dde_2373 recombinase A; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: ATPase AAA YP_003159672.1 KEGG: dde:Dde_2374 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD YP_003159674.1 PFAM: PSP1 domain protein; KEGG: dvl:Dvul_1170 PSP1 domain-containing protein YP_003159675.1 TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase class I (M); t-RNA-binding domain protein; KEGG: dvl:Dvul_1171 methionyl-tRNA synthetase YP_003159676.1 PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: cth:Cthe_2399 formate-tetrahydrofolate ligase YP_003159677.1 KEGG: dsy:DSY2906 hypothetical protein; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein YP_003159678.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_3112 BadM/Rrf2 family transcriptional regulator YP_003159679.1 KEGG: dde:Dde_1081 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ YP_003159680.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dvl:Dvul_0799 metal dependent phosphohydrolase YP_003159682.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: sfu:Sfum_2125 phosphodiesterase, MJ0936 family YP_003159683.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: dvl:Dvul_1929 PpiC-type peptidyl-prolyl cis- trans isomerase YP_003159684.1 KEGG: dde:Dde_1406 aconitate hydratase; TIGRFAM: aconitate hydratase; PFAM: aconitate hydratase domain protein YP_003159686.1 KEGG: dvl:Dvul_2138 5-enolpyruvylshikimate-3- phosphate synthase-like protein YP_003159687.1 KEGG: dde:Dde_2265 sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase YP_003159688.1 TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1109 adenylylsulfate reductase subunit beta YP_003159689.1 TIGRFAM: adenylylsulfate reductase, alpha subunit; KEGG: dvl:Dvul_2136 adenylylsulfate reductase YP_003159690.1 KEGG: dvl:Dvul_2135 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003159691.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvu:DVU0849 heterodisulfide reductase, iron- sulfur-binding subunit YP_003159692.1 KEGG: dde:Dde_1113 heterodisulfide reductase, transmembrane subunit YP_003159693.1 KEGG: dvl:Dvul_2132 hypothetical protein YP_003159694.1 PFAM: protein of unknown function DUF55; KEGG: dde:Dde_1357 hypothetical protein YP_003159695.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dvl:Dvul_2250 ABC transporter related YP_003159696.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_0261 ATPase YP_003159697.1 PFAM: inner-membrane translocator; KEGG: dde:Dde_0260 branched-chain amino acid ABC transporter, permease protein YP_003159698.1 PFAM: inner-membrane translocator; KEGG: dde:Dde_0259 branched-chain amino acid ABC transporter, permease protein YP_003159699.1 PFAM: extracellular ligand-binding receptor; KEGG: dvl:Dvul_2254 extracellular ligand-binding receptor YP_003159700.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: gsu:GSU3395 proline dehydrogenase/delta-1- pyrroline-5-carboxylate dehydrogenase YP_003159701.1 PFAM: regulatory protein AsnC/Lrp family; regulatory protein MarR; SMART: regulatory protein AsnC/Lrp family; KEGG: gbm:Gbem_2858 transcriptional regulator, AsnC family YP_003159702.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; MGS domain protein; ATP-grasp domain protein; Carbamoyl- phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: dde:Dde_0333 carbamoyl-phosphate synthase large subunit YP_003159703.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: dvl:Dvul_2807 amidophosphoribosyltransferase YP_003159704.1 KEGG: dde:Dde_0335 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; SMART: CBS domain containing protein YP_003159705.1 KEGG: dde:Dde_3123 hypothetical protein YP_003159706.1 KEGG: dvl:Dvul_2326 1A family penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; SMART: RNA binding S1 domain protein YP_003159707.1 PFAM: nucleoside recognition domain protein; KEGG: sfu:Sfum_3415 nucleoside recognition domain protein YP_003159708.1 PFAM: peptidase M24; creatinase; KEGG: dde:Dde_0217 M24 family peptidase YP_003159709.1 KEGG: dvl:Dvul_2683 hypothetical protein YP_003159710.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: dvl:Dvul_0185 TatD family hydrolase YP_003159711.1 PFAM: protein of unknown function DUF343; KEGG: dvu:DVU0656 hypothetical protein YP_003159712.1 TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: dde:Dde_0294 pantothenate kinase YP_003159713.1 KEGG: dvl:Dvul_2659 phosphopyruvate hydratase; TIGRFAM: enolase; PFAM: enolase YP_003159714.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: dvl:Dvul_2658 methylenetetrahydrofolate dehydrogenase (NADP(+)) YP_003159715.1 PFAM: protein of unknown function DUF52; KEGG: dde:Dde_2961 hypothetical protein YP_003159716.1 SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2960 TPR repeat-containing protein YP_003159717.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_2959 Fis family transcriptional regulator YP_003159718.1 TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; KEGG: sfu:Sfum_4077 sugar fermentation stimulation protein YP_003159719.1 PFAM: Hsp33 protein; KEGG: gme:Gmet_0041 HSP33 protein YP_003159720.1 PFAM: protein of unknown function DUF1078 domain protein; KEGG: dvl:Dvul_0472 hypothetical protein YP_003159721.1 PFAM: protein of unknown function DUF198; KEGG: dvu:DVU2892 GTP cyclohydrolase YP_003159722.1 PFAM: NikR nickel binding; CopG domain protein DNA- binding domain protein; KEGG: dvl:Dvul_0474 nickel responsive regulator YP_003159723.1 PFAM: Methyltransferase type 11; KEGG: dde:Dde_2955 hypothetical protein YP_003159724.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dps:DP0681 sugar ABC transporter, ATP-binding protein YP_003159725.1 PFAM: phosphoribosyltransferase; KEGG: dps:DP0680 xanthine-guanine phosphoribosyltransferase YP_003159726.1 PFAM: inner-membrane translocator; KEGG: dvl:Dvul_1925 inner-membrane translocator YP_003159727.1 PFAM: inner-membrane translocator; KEGG: dps:DP0678 sugar ABC transporter, permease protein YP_003159728.1 PFAM: basic membrane lipoprotein; KEGG: dvl:Dvul_1927 basic membrane lipoprotein YP_003159729.1 PFAM: type IV pilus assembly PilZ; KEGG: dvl:Dvul_3074 hypothetical protein YP_003159730.1 KEGG: dde:Dde_2592 hypothetical protein YP_003159731.1 KEGG: dde:Dde_2591 hypothetical protein YP_003159732.1 PFAM: glycoside hydrolase family 57; KEGG: dvu:DVU2472 hypothetical protein YP_003159733.1 TIGRFAM: gid protein; PFAM: glucose-inhibited division protein A; FAD dependent oxidoreductase; KEGG: dde:Dde_1422 tRNA (uracil-5-)- methyltransferase Gid YP_003159734.1 TIGRFAM: ATPase P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: dvu:DVU1993 cation transporter E1-E2 family ATPase YP_003159735.1 KEGG: sdn:Sden_1471 hypothetical protein YP_003159736.1 PFAM: pseudouridine synthase; KEGG: hch:HCH_02061 pseudouridylate synthases, 23S RNA-specific YP_003159738.1 PFAM: response regulator receiver; TPR repeat- containing protein; SMART: Tetratricopeptide domain protein; KEGG: dvl:Dvul_2012 response regulator receiver protein YP_003159739.1 PFAM: peptidase U32; KEGG: dvl:Dvul_0074 peptidase U32 YP_003159740.1 KEGG: dde:Dde_3684 hypothetical protein YP_003159741.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_2901 GDP-mannose 4,6-dehydratase YP_003159742.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: lch:Lcho_0624 NAD-dependent epimerase/dehydratase YP_003159743.1 PFAM: DNA polymerase beta domain protein region; KEGG: pph:Ppha_1589 DNA polymerase beta domain protein region YP_003159744.1 PFAM: protein of unknown function DUF86; KEGG: cli:Clim_1470 protein of unknown function DUF86 YP_003159745.1 PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: lip:LIC097 WblB protein YP_003159746.1 KEGG: glo:Glov_1509 transferase hexapeptide repeat containing protein YP_003159747.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rrs:RoseRS_4428 glutamine--scyllo-inositol transaminase YP_003159748.1 KEGG: mmw:Mmwyl1_0835 UDP-N-acetylglucosamine 2- epimerase YP_003159749.1 PFAM: polysaccharide biosynthesis protein; KEGG: bba:Bd1688 polysaccharide biosynthesis protein CpsL YP_003159750.1 KEGG: pmb:A9601_14081 hypothetical protein YP_003159751.1 KEGG: mem:Memar_2057 asparagine synthase (glutamine- hydrolyzing); TIGRFAM: asparagine synthase (glutamine- hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_003159752.1 KEGG: pcr:Pcryo_0623 hypothetical protein YP_003159753.1 PFAM: glycosyl transferase family 2; KEGG: tbd:Tbd_1875 glycosyl transferase, group 2 family protein YP_003159754.1 PFAM: glycosyl transferase family 2; KEGG: net:Neut_0179 glycosyl transferase family protein YP_003159755.1 PFAM: Oligosaccharyl transferase STT3 subunit; KEGG: dvl:Dvul_1810 hypothetical protein YP_003159756.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4- dehydrorhamnose reductase; KEGG: noc:Noc_2167 NAD-dependent epimerase/dehydratase YP_003159757.1 PFAM: glycosyl transferase family 4; KEGG: dol:Dole_1301 glycosyl transferase family protein YP_003159758.1 PFAM: polysaccharide biosynthesis protein CapD; 3- beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; short- chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: sfu:Sfum_3360 polysaccharide biosynthesis protein CapD YP_003159759.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_0432 GDP-mannose 4,6-dehydratase YP_003159760.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: mpt:Mpe_A2730 GDP-L-fucose synthetase YP_003159761.1 KEGG: hha:Hhal_0744 hypothetical protein YP_003159762.1 KEGG: mmw:Mmwyl1_0818 hypothetical protein YP_003159763.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_3683 ATPase YP_003159764.1 KEGG: mgm:Mmc1_1139 methyltransferase type 11 YP_003159765.1 PFAM: Methyltransferase type 11; KEGG: pvi:Cvib_0673 hypothetical protein YP_003159766.1 KEGG: paa:Paes_0352 glycosyl transferase group 1 YP_003159767.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cau:Caur_3440 methyltransferase type 11 YP_003159768.1 KEGG: pvi:Cvib_0676 glycosyl transferase, group 1 YP_003159769.1 KEGG: pvi:Cvib_0676 glycosyl transferase, group 1 YP_003159770.1 PFAM: glycosyl transferase family 2; KEGG: gur:Gura_1682 glycosyl transferase family protein YP_003159771.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_2889 glycosyltransferase-like YP_003159772.1 KEGG: dde:Dde_2883 sugar transferase YP_003159773.1 KEGG: rle:RL0815 O-acetyl transferase YP_003159774.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dde:Dde_2880 methylase involved in ubiquinone/menaquinone biosynthesis-like YP_003159775.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: dde:Dde_2888 UDP-glucose 4-epimerase YP_003159776.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_2887 glycosyl transferase YP_003159777.1 PFAM: transposase IS3/IS911 family protein; KEGG: dvu:DVU0556 ISDvu3, transposase OrfA YP_003159778.1 PFAM: Integrase catalytic region; KEGG: bpl:BURPS1106A_3886 transposase B YP_003159779.1 TIGRFAM: UDP-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mfa:Mfla_2028 sugar transferase YP_003159780.1 PFAM: glycosyl transferase family 2; KEGG: aba:Acid345_0892 glycosyl transferase, family 2 YP_003159781.1 PFAM: glycosyl transferase group 1; KEGG: mpt:Mpe_A1051 transferase YP_003159782.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: tel:tlr1434 probable UDP-N-acetyl-D- mannosaminuronic acid transferase YP_003159783.1 PFAM: O-antigen polymerase; KEGG: dvu:DVU0670 exopolysaccharide production protein YP_003159784.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: dde:Dde_1960 lipid A export ATP- binding/permease protein MsbA YP_003159787.1 PFAM: glycosyl transferase group 1; KEGG: dvl:Dvul_1933 glycosyl transferase, group 1 YP_003159788.1 PFAM: polysaccharide deacetylase; KEGG: bbr:BB3399 hypothetical protein YP_003159789.1 PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: dvl:Dvul_1932 hypothetical protein YP_003159790.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_1405 two component Fis family transcriptional regulator YP_003159791.1 PFAM: aminotransferase class I and II; KEGG: dvl:Dvul_2140 aspartate aminotransferase YP_003159792.1 KEGG: dde:Dde_1100 signal recognition particle subunit FFH/SRP54 (SRP54); TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA YP_003159793.1 TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: dde:Dde_1099 30S ribosomal protein S16 YP_003159794.1 KEGG: dde:Dde_1098 hypothetical protein YP_003159795.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: PRC-barrel domain protein; RimM protein; KEGG: dvl:Dvul_2144 16S rRNA processing protein RimM YP_003159796.1 KEGG: dde:Dde_1096 tRNA (guanine37-N1) methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_003159797.1 TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; KEGG: dvl:Dvul_2146 50S ribosomal protein L19 YP_003159798.1 PFAM: ribonuclease HII/HIII; KEGG: dvl:Dvul_2147 ribonuclease H YP_003159799.1 PFAM: protein of unknown function UPF0102; KEGG: dvl:Dvul_2148 hypothetical protein YP_003159800.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dvl:Dvul_2149 uroporphyrin-III C/tetrapyrrole methyltransferase YP_003159801.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: dvl:Dvul_2150 PTS system mannose/fructose/sorbose family IID component YP_003159802.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: dde:Dde_1090 HPrNtr YP_003159803.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; KEGG: dde:Dde_1089 phosphoenolpyruvate--protein phosphotransferase YP_003159804.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: dvl:Dvul_2153 SsrA-binding protein YP_003159805.1 PFAM: isochorismatase hydrolase; KEGG: sfu:Sfum_2641 isochorismatase hydrolase YP_003159806.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; SecA Wing and Scaffold; SEC-C motif domain protein; helicase domain protein; KEGG: dvu:DVU0825 preprotein translocase subunit SecA YP_003159807.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_0675 glycine/betaine/L-proline ABC transporter, periplasmic-binding protein YP_003159808.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0674 glycine/betaine/L-proline ABC transporter, permease protein YP_003159809.1 KEGG: dvl:Dvul_0956 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; SMART: ATPase AAA; CBS domain containing protein YP_003159810.1 KEGG: dde:Dde_3740 LuxR family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; regulatory protein LuxR; SMART: regulatory protein LuxR; PAS domain containing protein YP_003159811.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: dvu:DVU2394 sigma-54 dependent transcriptional regulator/response regulator YP_003159812.1 PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3535 histidine kinase YP_003159813.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dvl:Dvul_0834 iron-containing alcohol dehydrogenase YP_003159814.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dvl:Dvul_0825 iron-containing alcohol dehydrogenase YP_003159816.1 KEGG: dvl:Dvul_1877 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase YP_003159817.1 PFAM: pseudouridine synthase; KEGG: gsu:GSU3160 RNA pseudouridine synthase family protein YP_003159818.1 KEGG: sek:SSPA1441 L-asparaginase I; TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase YP_003159819.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: dde:Dde_2001 phospholipid/glycerol acyltransferase YP_003159820.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dvl:Dvul_0515 MarR family transcriptional regulator YP_003159821.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: afw:Anae109_2032 cation diffusion facilitator family transporter YP_003159822.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cpr:CPR_0545 CDP-alcohol phosphatidyltransferase YP_003159823.1 KEGG: dvl:Dvul_2533 hypothetical protein YP_003159824.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dvl:Dvul_0752 phosphoribosylanthranilate isomerase YP_003159825.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: par:Psyc_1521 NADH-dependent flavin oxidoreductase YP_003159826.1 KEGG: sfu:Sfum_1195 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat- containing protein YP_003159827.1 PFAM: isochorismatase hydrolase; KEGG: cbf:CLI_0330 isochorismate family protein YP_003159828.1 PFAM: thioesterase superfamily protein; KEGG: dde:Dde_2647 phenylacetic acid degradation- related protein YP_003159829.1 TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: hch:HCH_01744 septum formation inhibitor YP_003159830.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: maq:Maqu_2336 septum site-determining protein MinD YP_003159831.1 TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: hha:Hhal_1589 cell division topological specificity factor MinE YP_003159832.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dde:Dde_0266 acetyltransferase-like YP_003159833.1 KEGG: dde:Dde_0542 DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA- binding YP_003159834.1 PFAM: protein of unknown function DUF399; SMART: PDZ/DHR/GLGF domain protein; KEGG: dde:Dde_0541 PDZ/DHR/GLGF YP_003159835.1 KEGG: dde:Dde_0540 phenylacetate-coenzyme A ligase YP_003159836.1 PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: dvu:DVU3053 hypothetical protein YP_003159837.1 KEGG: dde:Dde_0537 ribonuclease E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein YP_003159838.1 PFAM: protein of unknown function DUF208; KEGG: dol:Dole_1180 hypothetical protein YP_003159839.1 KEGG: dde:Dde_0536 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003159840.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein; KEGG: sat:SYN_00178 superfamily II DNA/RNA helicase YP_003159841.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1460 hypothetical protein YP_003159842.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: dvl:Dvul_2182 methylated-DNA--protein- cysteine methyltransferase YP_003159843.1 KEGG: dvl:Dvul_2183 radical SAM protein; TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003159844.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; cell division protein FtsA; KEGG: dde:Dde_0996 rod shape-determining protein MreB YP_003159845.1 TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: dde:Dde_0995 rod shape-determining protein MreC YP_003159846.1 KEGG: dvl:Dvul_2186 hypothetical protein YP_003159847.1 KEGG: dde:Dde_0993 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003159848.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: dde:Dde_0992 rod shape-determining protein RodA YP_003159849.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dde:Dde_0990 ATP synthase F0, B' subunit YP_003159850.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dvl:Dvul_2191 H+-transporting two-sector ATPase B/B' subunit YP_003159851.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: dvl:Dvul_2192 F0F1 ATP synthase subunit delta YP_003159852.1 KEGG: dvl:Dvul_2193 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein YP_003159853.1 KEGG: dvl:Dvul_2194 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit YP_003159854.1 KEGG: dvl:Dvul_2195 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: ATPase AAA YP_003159855.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: dvl:Dvul_2196 F0F1 ATP synthase subunit epsilon YP_003159856.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; KEGG: dvu:DVU2668 UDP-N-acetylglucosamine pyrophosphorylase YP_003159857.1 KEGG: dde:Dde_0980 hypothetical protein YP_003159858.1 KEGG: dde:Dde_0979 hypothetical protein YP_003159859.1 KEGG: dde:Dde_0978 metal dependent phosphohydrolase; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KH type 1 domain protein; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KH domain protein YP_003159860.1 PFAM: metallophosphoesterase; KEGG: dvl:Dvul_2034 metallophosphoesterase YP_003159861.1 KEGG: dde:Dde_0228 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA- binding S4 domain protein YP_003159862.1 TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: dvl:Dvul_2015 4-hydroxybenzoate polyprenyltransferase YP_003159863.1 KEGG: dvl:Dvul_0177 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003159864.1 PFAM: protein of unknown function DUF1009; KEGG: dde:Dde_1375 hypothetical protein YP_003159865.1 KEGG: dvl:Dvul_0896 UDP-N-acetylglucosamine acyltransferase; TIGRFAM:acyl-ACP--UDP-N-acetylglu cosamineO-acyltransferase; PFAM: transferase hexapeptide repeat containing protein YP_003159866.1 TIGRFAM: beta-hydroxyacyl-ACP dehydratase FabZ; PFAM: Beta-hydroxyacyl-ACP dehydratase FabA/FabZ; KEGG: dde:Dde_1373 3-hydroxyacyl-[acyl-carrier- protein] dehydratase YP_003159867.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase LpxD; transferase hexapeptide repeat containing protein; KEGG: dvu:DVU2369 UDP-3-O-(R-3-hydroxymyristoyl)- glucosamine N-acyltransferase YP_003159868.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: glo:Glov_0761 outer membrane chaperone Skp (OmpH) YP_003159869.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: dde:Dde_1368 OMP85 family outer membrane protein YP_003159870.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_1367 ATPase YP_003159871.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: dde:Dde_1366 LolC/E family lipoprotein releasing system, transmembrane protein YP_003159872.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dvl:Dvul_0888 lysyl-tRNA synthetase YP_003159873.1 PFAM: amidohydrolase 2; KEGG: dde:Dde_2736 amidohydrolase family protein YP_003159874.1 PFAM: thioesterase superfamily protein; KEGG: dde:Dde_2735 4-hydroxybenzoyl-CoA thioesterase YP_003159875.1 KEGG: sfu:Sfum_1217 proposed homoserine kinase; TIGRFAM: phosphonopyruvate decarboxylase-related protein; PFAM: metalloenzyme domain protein YP_003159876.1 PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: dde:Dde_2731 homoserine dehydrogenase YP_003159877.1 KEGG: dde:Dde_2930 dTDP-4-dehydrorhamnose 3,5- epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_003159878.1 KEGG: dde:Dde_2932 hypothetical protein YP_003159879.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: dvl:Dvul_2269 molybdopterin oxidoreductase YP_003159880.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2270 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003159881.1 PFAM: Polysulphide reductase NrfD; KEGG: dvl:Dvul_2271 molybdopterin oxidoreductase, transmembrane subunit YP_003159882.1 KEGG: cac:CAC3042 O-actetyl transferase related protein YP_003159883.1 PFAM: major facilitator superfamily MFS_1; KEGG: pca:Pcar_2162 hypothetical protein YP_003159884.1 PFAM: Radical SAM domain protein; KEGG: dvl:Dvul_2680 anaerobic ribonucleoside- triphosphate reductase activating protein YP_003159885.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; KEGG: dvl:Dvul_2681 anaerobic ribonucleoside triphosphate reductase YP_003159887.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: dvl:Dvul_1731 hypothetical protein YP_003159888.1 KEGG: dde:Dde_2399 hypothetical protein YP_003159889.1 KEGG: mgm:Mmc1_1607 hypothetical protein YP_003159890.1 KEGG: dps:DP0331 hypothetical protein YP_003159891.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP0330 ABC transporter permease YP_003159892.1 PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: dps:DP0329 ABC transporter ATP-binding protein YP_003159894.1 PFAM: heat shock protein Hsp20; KEGG: cak:Caul_2857 heat shock protein HSP20 YP_003159895.1 PFAM: peptidase S16 lon domain protein; KEGG: dde:Dde_2007 ATP-dependent protease YP_003159896.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bha:BH3571 thioredoxin reductase (NADPH) YP_003159898.1 PFAM: Radical SAM domain protein; KEGG: pca:Pcar_1369 hypothetical protein YP_003159899.1 PFAM: TOBE domain protein; integrase family protein; KEGG: dvl:Dvul_2199 TOBE domain-containing protein YP_003159900.1 KEGG: dde:Dde_0788 TPR repeat-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat- containing protein; SMART: GGDEF domain containing protein; Tetratricopeptide domain protein YP_003159901.1 PFAM: beta-lactamase domain protein; KEGG: dde:Dde_0786 metallo-beta-lactamase family protein YP_003159902.1 PFAM: NADPH-dependent FMN reductase; KEGG: dvu:DVU2767 iron-sulfur flavoprotein YP_003159903.1 KEGG: dde:Dde_0784 ComF family protein YP_003159904.1 KEGG: cts:Ctha_0019 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAS domain containing protein; ATP-binding region ATPase domain protein YP_003159905.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: dvl:Dvul_2058 50S ribosomal protein L21 YP_003159906.1 TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: dde:Dde_2691 50S ribosomal protein L27 YP_003159907.1 TIGRFAM: GTP-binding protein Obg/CgtA; small GTP- binding protein; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; KEGG: dde:Dde_2690 GTPase ObgE YP_003159908.1 KEGG: dde:Dde_2689 gamma-glutamyl kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; SMART: PUA domain containing protein YP_003159909.1 TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: aoe:Clos_1437 thiamine pyrophosphokinase YP_003159910.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: sru:SRU_1805 Xaa-Pro dipeptidase YP_003159911.1 KEGG: hypothetical protein; K04486 histidinol- phosphatase (PHP family); TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein YP_003159912.1 KEGG: dps:DP2754 hypothetical protein YP_003159913.1 KEGG: sfu:Sfum_2557 Tfp pilus assembly protein tip- associated adhesin PilY1-like YP_003159915.1 KEGG: sfu:Sfum_2555 hypothetical protein YP_003159916.1 KEGG: sat:SYN_01760 hypothetical protein YP_003159917.1 KEGG: rso:RSc2677 type 4 fimbrial biogenesis PilW-related protein transmembrane YP_003159918.1 KEGG: sfu:Sfum_2552 hypothetical protein YP_003159920.1 KEGG: sfu:Sfum_2557 Tfp pilus assembly protein tip- associated adhesin PilY1-like YP_003159921.1 KEGG: sfu:Sfum_2555 hypothetical protein YP_003159923.1 KEGG: dau:Daud_0971 general secretion pathway protein H YP_003159924.1 KEGG: sfu:Sfum_2553 type II secretory pathway component PulJ-like YP_003159926.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: sfu:Sfum_3111 two component, sigma54 specific, transcriptional regulator, fis family YP_003159928.1 SMART: Water Stress and Hypersensitive response domain protein; KEGG: bvi:Bcep1808_0477 water stress/hypersensitive response protein YP_003159929.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: dvl:Dvul_1188 peptide methionine sulfoxide reductase YP_003159930.1 PFAM: CoA-binding domain protein; KEGG: dol:Dole_0586 CoA-binding domain-containing protein YP_003159931.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: dps:DP2840 glutamate dehydrogenase YP_003159932.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; KEGG: dps:DP2841 phosphoenolpyruvate synthase/pyruvate phosphate dikinase YP_003159933.1 TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: cvi:CV_2569 chromosome replication initiation inhibitor protein YP_003159934.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dde:Dde_3475 L-lysine exporter YP_003159935.1 PFAM: Threonyl/alanyl tRNA synthetase SAD; KEGG: dvl:Dvul_0608 threonyl/alanyl tRNA synthetase, SAD YP_003159936.1 TIGRFAM: cobyric acid synthase CobQ; L-threonine-O- 3-phosphate decarboxylase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; aminotransferase class I and II; Cobyrinic acid ac-diamide synthase; KEGG: pca:Pcar_0484 cobyric acid synthase YP_003159937.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: mth:MTH1567 catalytic subunit of nitrate reductase (flp) YP_003159938.1 PFAM: glutamyl-tRNA synthetase class Ic; KEGG: dvl:Dvul_1396 glutamyl-tRNA synthetase, class Ic YP_003159939.1 PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: bba:Bd3288 hypothetical protein YP_003159940.1 KEGG: dps:DP1626 hypothetical protein YP_003159941.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH- dependent FMN reductase; KEGG: cac:CAC0018 NADPH-quinone reductase YabF family YP_003159942.1 KEGG: pap:PSPA7_5453 hypothetical protein YP_003159943.1 TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase; KEGG: dvu:DVU1871 aspartate ammonia-lyase YP_003159944.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: gur:Gura_1198 LysR family transcriptional regulator YP_003159945.1 PFAM: amino acid permease-associated region; KEGG: ckl:CKL_3373 permease YP_003159946.1 KEGG: dde:Dde_1333 hypothetical protein YP_003159947.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: pca:Pcar_2346 rubrerythrin YP_003159948.1 PFAM: heat shock protein Hsp20; KEGG: dvl:Dvul_0793 heat shock protein HSP20 YP_003159949.1 PFAM: heat shock protein Hsp20; KEGG: dvl:Dvul_0792 heat shock protein HSP20 YP_003159950.1 KEGG: dvl:Dvul_2906 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein YP_003159951.1 PFAM: dihydrouridine synthase DuS; KEGG: dvu:DVU0054 dihydrouridine synthase family protein YP_003159952.1 KEGG: dde:Dde_0387 hypothetical protein YP_003159953.1 KEGG: dde:Dde_0386 hypothetical protein YP_003159954.1 PFAM: flagellar basal body-associated protein FliL; KEGG: dvu:DVU3227 flagellar basal body-associated protein YP_003159955.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvl:Dvul_0160 response regulator receiver protein YP_003159956.1 KEGG: dvl:Dvul_0159 FliA/WhiG family RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_003159957.1 KEGG: dde:Dde_0382 flagellar synthesis regulator FleN YP_003159958.1 KEGG: dvl:Dvul_0157 flagellar biosynthesis protein FlhF YP_003159959.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: dde:Dde_0380 flagellar biosynthesis protein FlhA YP_003159960.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: dde:Dde_0379 flagellar biosynthesis protein FlhB YP_003159961.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: dvl:Dvul_0154 flagellar biosynthetic protein FliR YP_003159962.1 PFAM: PP-loop domain protein; KEGG: dvl:Dvul_0147 PP-loop domain-containing protein YP_003159963.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: dde:Dde_0247 DNA-directed RNA polymerase, omega subunit YP_003159964.1 KEGG: dde:Dde_0248 heat shock protein DnaJ; TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein YP_003159965.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: dde:Dde_0249 GTP cyclohydrolase subunit MoaC YP_003159966.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: gme:Gmet_1126 GPR1/FUN34/YaaH YP_003159967.1 KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Cache domain protein; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; ATP-binding region ATPase domain protein YP_003159968.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: dvl:Dvul_2694 imidazoleglycerol phosphate synthase, cyclase subunit YP_003159969.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: dvl:Dvul_2695 imidazole glycerol phosphate synthase subunit HisH YP_003159970.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_3466 ADP-glyceromanno-heptose 6- epimerase precursor YP_003159971.1 KEGG: cts:Ctha_0862 hypothetical protein YP_003159972.1 KEGG: syf:Synpcc7942_1210 hypothetical protein YP_003159973.1 KEGG: dde:Dde_2486 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: ATPase AAA YP_003159974.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: gbm:Gbem_2036 flavin reductase domain protein FMN-binding YP_003159975.1 KEGG: dde:Dde_2050 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003159976.1 KEGG: dde:Dde_2327 hypothetical protein YP_003159977.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dvl:Dvul_0985 ribosomal RNA methyltransferase RrmJ/FtsJ YP_003159978.1 PFAM: protein of unknown function DUF28; KEGG: dvl:Dvul_0986 hypothetical protein YP_003159979.1 KEGG: dvu:DVU2258 crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_003159980.1 TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; KEGG: dde:Dde_2323 Holliday junction DNA helicase subunit RuvA YP_003159981.1 KEGG: dde:Dde_2322 Holliday junction DNA helicase B; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: ATPase AAA central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003159982.1 TIGRFAM: thymidylate synthase, flavin-dependent; PFAM: thymidylate synthase complementing protein ThyX; KEGG: nth:Nther_0173 thymidylate synthase, flavin- dependent