-- dump date 20140619_063052 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 485915000001 SEQ_END SEQ_END NC_013223.1 2864304 2864304 DR NC_013223.1; contig end 2864304..2864304 Desulfohalobium retbaense DSM 5692 485915000002 SEQ_END SEQ_END NC_013224.1 45263 45263 DR NC_013224.1; contig end 45263..45263 Desulfohalobium retbaense DSM 5692 YP_003196881.1 CDS Dret_0001 NC_013223.1 31 321 D KEGG: dma:DMR_00120 hypothetical protein; hypothetical protein 31..321 Desulfohalobium retbaense DSM 5692 8420362 YP_003196882.1 CDS Dret_0002 NC_013223.1 703 1515 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_0031 chromosome segregation ATPase; Cobyrinic acid ac-diamide synthase 703..1515 Desulfohalobium retbaense DSM 5692 8417804 YP_003196883.1 CDS Dret_0003 NC_013223.1 1715 2137 R KEGG: dma:DMR_00140 hypothetical protein; hypothetical protein complement(1715..2137) Desulfohalobium retbaense DSM 5692 8417805 YP_003196884.1 CDS Dret_0004 NC_013223.1 2671 3615 D KEGG: dvu:DVU3360 ParB family protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parB-like partition protein 2671..3615 Desulfohalobium retbaense DSM 5692 8417806 YP_003196885.1 CDS Dret_0005 NC_013223.1 3740 4756 D TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: dde:Dde_0028 D-alpha,beta-D-heptose 7- phosphate 1-kinase; rfaE bifunctional protein 3740..4756 Desulfohalobium retbaense DSM 5692 8417807 YP_003196886.1 CDS Dret_0006 NC_013223.1 4842 7070 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 4842..7070 Desulfohalobium retbaense DSM 5692 8417808 YP_003196887.1 CDS Dret_0007 NC_013223.1 7122 7817 D KEGG: dde:Dde_0114 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 7122..7817 Desulfohalobium retbaense DSM 5692 8417809 YP_003196888.1 CDS Dret_0008 NC_013223.1 7814 8689 D PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0115 cell division protein FtsX; hypothetical protein 7814..8689 Desulfohalobium retbaense DSM 5692 8417810 YP_003196889.1 CDS Dret_0009 NC_013223.1 8770 10440 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 8770..10440 Desulfohalobium retbaense DSM 5692 8417811 YP_003196890.1 CDS Dret_0010 NC_013223.1 10491 11237 D PFAM: Methyltransferase type 11; Methionine biosynthesis MetW protein; Methyltransferase type 12; KEGG: dvl:Dvul_0026 methyltransferase type 11; type 11 methyltransferase 10491..11237 Desulfohalobium retbaense DSM 5692 8417812 YP_003196891.1 CDS Dret_0011 NC_013223.1 11297 12538 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: dde:Dde_0230 molybdopterin molybdochelatase; molybdenum cofactor synthesis domain-containing protein complement(11297..12538) Desulfohalobium retbaense DSM 5692 8417813 YP_003196892.1 CDS Dret_0012 NC_013223.1 12543 13250 R PFAM: Fe-S cluster domain protein; KEGG: dvl:Dvul_2363 molybdopterin-guanine dinucleotide biosynthesis MobB region; Fe-S cluster domain-containing protein complement(12543..13250) Desulfohalobium retbaense DSM 5692 8417814 YP_003196893.1 CDS hisS NC_013223.1 13779 15038 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 13779..15038 Desulfohalobium retbaense DSM 5692 8417815 YP_003196894.1 CDS aspS NC_013223.1 15251 17059 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 15251..17059 Desulfohalobium retbaense DSM 5692 8417816 YP_003196895.1 CDS Dret_0015 NC_013223.1 17076 17579 D KEGG: dde:Dde_0013 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 17076..17579 Desulfohalobium retbaense DSM 5692 8417817 YP_003196896.1 CDS Dret_0016 NC_013223.1 17561 18529 D TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: dde:Dde_0014 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 17561..18529 Desulfohalobium retbaense DSM 5692 8417818 YP_003196897.1 CDS Dret_0017 NC_013223.1 18603 19499 D PFAM: protein of unknown function DUF116; KEGG: dvl:Dvul_0031 hypothetical protein; hypothetical protein 18603..19499 Desulfohalobium retbaense DSM 5692 8417819 YP_003196898.1 CDS Dret_0018 NC_013223.1 19568 20857 D PFAM: NusB/RsmB/TIM44; Fmu (Sun) domain protein; KEGG: dma:DMR_00320 rRNA (cytosine-C(5)-)- methyltransferase; NusB/RsmB/TIM44 19568..20857 Desulfohalobium retbaense DSM 5692 8417820 YP_003196899.1 CDS Dret_0019 NC_013223.1 20979 21893 R TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate oxidase; KEGG: dvm:DvMF_2143 dihydroorotate dehydrogenase family protein; dihydroorotate dehydrogenase family protein complement(20979..21893) Desulfohalobium retbaense DSM 5692 8417821 YP_003196900.1 CDS Dret_0020 NC_013223.1 21893 22672 R PFAM: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: dvm:DvMF_2142 dihydroorotate oxidase B, electron transfer subunit; dihydroorotate dehydrogenase electron transfer subunit complement(21893..22672) Desulfohalobium retbaense DSM 5692 8417822 YP_003196901.1 CDS Dret_0021 NC_013223.1 22750 24351 R PFAM: SMC domain protein; KEGG: dvm:DvMF_0923 SMC domain protein; SMC domain-containing protein complement(22750..24351) Desulfohalobium retbaense DSM 5692 8417823 YP_003196902.1 CDS Dret_0022 NC_013223.1 24475 25167 R KEGG: dol:Dole_1611 hypothetical protein; hypothetical protein complement(24475..25167) Desulfohalobium retbaense DSM 5692 8417824 YP_003196903.1 CDS Dret_0023 NC_013223.1 25202 25597 D PFAM: protein of unknown function UPF0047; KEGG: dde:Dde_3175 hypothetical protein; hypothetical protein 25202..25597 Desulfohalobium retbaense DSM 5692 8417825 YP_003196904.1 CDS Dret_0024 NC_013223.1 25691 27022 R PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dvm:DvMF_1427 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(25691..27022) Desulfohalobium retbaense DSM 5692 8417826 YP_003196905.1 CDS Dret_0025 NC_013223.1 27177 28058 D PFAM: periplasmic solute binding protein; KEGG: dvl:Dvul_1725 periplasmic solute binding protein; periplasmic solute binding protein 27177..28058 Desulfohalobium retbaense DSM 5692 8417827 YP_003196906.1 CDS Dret_0026 NC_013223.1 28055 28876 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2209 ATPase; ABC transporter 28055..28876 Desulfohalobium retbaense DSM 5692 8417828 YP_003196907.1 CDS Dret_0027 NC_013223.1 28876 29703 D PFAM: ABC-3 protein; KEGG: dvm:DvMF_0117 ABC-3 protein; ABC transporter 28876..29703 Desulfohalobium retbaense DSM 5692 8417829 YP_003196908.1 CDS Dret_0028 NC_013223.1 30016 31941 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfu:Sfum_2744 TonB-dependent receptor; TonB-dependent receptor 30016..31941 Desulfohalobium retbaense DSM 5692 8417830 YP_003196909.1 CDS Dret_0029 NC_013223.1 31973 32836 D PFAM: periplasmic binding protein; KEGG: dol:Dole_2060 periplasmic binding protein; periplasmic binding protein 31973..32836 Desulfohalobium retbaense DSM 5692 8417831 YP_003196910.1 CDS Dret_0030 NC_013223.1 32833 32988 D hypothetical protein 32833..32988 Desulfohalobium retbaense DSM 5692 8417832 YP_003196911.1 CDS Dret_0031 NC_013223.1 33426 34427 D PFAM: transport system permease protein; KEGG: dol:Dole_2061 transport system permease protein; transport system permease 33426..34427 Desulfohalobium retbaense DSM 5692 8417833 YP_003196912.1 CDS Dret_0032 NC_013223.1 34415 35209 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dol:Dole_2062 ABC transporter-related protein; ABC transporter 34415..35209 Desulfohalobium retbaense DSM 5692 8417834 YP_003196913.1 CDS Dret_0033 NC_013223.1 35457 36686 R PFAM: major facilitator superfamily MFS_1; KEGG: dat:HRM2_34570 NarK; major facilitator superfamily protein complement(35457..36686) Desulfohalobium retbaense DSM 5692 8417835 YP_003196914.1 CDS Dret_0034 NC_013223.1 37283 39274 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: geo:Geob_1218 alpha amylase catalytic region; alpha amylase 37283..39274 Desulfohalobium retbaense DSM 5692 8417836 YP_003196915.1 CDS Dret_0035 NC_013223.1 39394 42723 D KEGG: gbm:Gbem_0136 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase- fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose synthase 39394..42723 Desulfohalobium retbaense DSM 5692 8417837 YP_003196916.1 CDS Dret_0036 NC_013223.1 42778 44685 D KEGG: sfu:Sfum_3451 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan-branching protein 42778..44685 Desulfohalobium retbaense DSM 5692 8417838 YP_003196917.1 CDS Dret_0037 NC_013223.1 44682 46526 D KEGG: sfu:Sfum_2349 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose trehalohydrolase 44682..46526 Desulfohalobium retbaense DSM 5692 8417839 YP_003196918.1 CDS Dret_0038 NC_013223.1 47020 49443 D PFAM: glycoside hydrolase family 57; KEGG: sfu:Sfum_2350 glycoside hydrolase, family 57; glycoside hydrolase family protein 47020..49443 Desulfohalobium retbaense DSM 5692 8417840 YP_003196919.1 CDS Dret_0039 NC_013223.1 49440 52169 D KEGG: sfu:Sfum_2351 malto-oligosyltrehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose synthase 49440..52169 Desulfohalobium retbaense DSM 5692 8417841 YP_003196920.1 CDS Dret_0040 NC_013223.1 52417 52566 D hypothetical protein 52417..52566 Desulfohalobium retbaense DSM 5692 8417842 YP_003196921.1 CDS Dret_0041 NC_013223.1 52682 54190 D KEGG: pca:Pcar_0554 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase 52682..54190 Desulfohalobium retbaense DSM 5692 8417843 YP_003196922.1 CDS Dret_0042 NC_013223.1 54631 56523 D PFAM: AMP-dependent synthetase and ligase; KEGG: dps:DP1333 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 54631..56523 Desulfohalobium retbaense DSM 5692 8417844 YP_003196923.1 CDS Dret_0043 NC_013223.1 57308 59257 D TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: dde:Dde_2639 threonyl-tRNA synthetase / Ser- tRNA(Thr) hydrolase; threonyl-tRNA synthetase 57308..59257 Desulfohalobium retbaense DSM 5692 8417846 YP_003196924.1 CDS infC NC_013223.1 59229 59750 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 59229..59750 Desulfohalobium retbaense DSM 5692 8417847 YP_003196925.1 CDS Dret_0045 NC_013223.1 59859 60056 D TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: pca:Pcar_1420 ribosomal protein L35; 50S ribosomal protein L35 59859..60056 Desulfohalobium retbaense DSM 5692 8417848 YP_003196926.1 CDS Dret_0046 NC_013223.1 60097 60450 D TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: dvl:Dvul_0710 50S ribosomal protein L20; 50S ribosomal protein L20 60097..60450 Desulfohalobium retbaense DSM 5692 8417849 YP_003196927.1 CDS pheS NC_013223.1 60452 61504 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 60452..61504 Desulfohalobium retbaense DSM 5692 8417850 YP_003196928.1 CDS pheT NC_013223.1 61966 64362 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 61966..64362 Desulfohalobium retbaense DSM 5692 8417851 YP_003196929.1 CDS Dret_0049 NC_013223.1 64806 65099 D KEGG: dvl:Dvul_1822 hypothetical protein; hypothetical protein 64806..65099 Desulfohalobium retbaense DSM 5692 8417852 YP_003196930.1 CDS Dret_0050 NC_013223.1 65099 65701 D PFAM: protein of unknown function DUF340 membrane; KEGG: dde:Dde_2305 hypothetical protein; hypothetical protein 65099..65701 Desulfohalobium retbaense DSM 5692 8417853 YP_003196931.1 CDS Dret_0051 NC_013223.1 66118 66459 R PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: dma:DMR_10720 MerR family transcriptional regulator; transcriptional regulator, MerR family complement(66118..66459) Desulfohalobium retbaense DSM 5692 8417854 YP_003196932.1 CDS Dret_0052 NC_013223.1 66804 67232 R KEGG: dvm:DvMF_0531 hypothetical protein; hypothetical protein complement(66804..67232) Desulfohalobium retbaense DSM 5692 8417855 YP_003196933.1 CDS Dret_0053 NC_013223.1 67565 68833 D KEGG: dvl:Dvul_0331 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 67565..68833 Desulfohalobium retbaense DSM 5692 8417856 YP_003196934.1 CDS Dret_0054 NC_013223.1 69042 70058 D KEGG: dde:Dde_0097 hypothetical protein; hypothetical protein 69042..70058 Desulfohalobium retbaense DSM 5692 8417857 YP_003196935.1 CDS Dret_0055 NC_013223.1 70510 71709 R PFAM: sulphate transporter; KEGG: dat:HRM2_13280 SulP1; sulfate transporter complement(70510..71709) Desulfohalobium retbaense DSM 5692 8417858 YP_003196936.1 CDS Dret_0056 NC_013223.1 73677 74741 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: oan:Oant_4496 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein complement(73677..74741) Desulfohalobium retbaense DSM 5692 8417859 YP_003196937.1 CDS Dret_0057 NC_013223.1 74991 76643 R KEGG: rpb:RPB_2521 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(74991..76643) Desulfohalobium retbaense DSM 5692 8417860 YP_003196938.1 CDS Dret_0058 NC_013223.1 77169 77591 R PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: pca:Pcar_1342 putative acetoin utilization protein AcuB; hypothetical protein complement(77169..77591) Desulfohalobium retbaense DSM 5692 8417861 YP_003196939.1 CDS Dret_0059 NC_013223.1 77997 79796 D PFAM: Extracellular ligand-binding receptor; KEGG: sat:SYN_00659 methyl-accepting chemotaxis protein; extracellular ligand-binding receptor 77997..79796 Desulfohalobium retbaense DSM 5692 8417862 YP_003196940.1 CDS Dret_0060 NC_013223.1 80362 81225 R PFAM: beta-lactamase domain protein; KEGG: dal:Dalk_1100 metal-dependent hydrolase; beta-lactamase domain-containing protein complement(80362..81225) Desulfohalobium retbaense DSM 5692 8417864 YP_003196941.1 CDS Dret_0061 NC_013223.1 81586 82419 D PFAM: Rhodanese domain protein; Rubrerythrin; SMART: Rhodanese domain protein; KEGG: dat:HRM2_46820 rhodanese-like domain protein; rhodanese domain-containing protein 81586..82419 Desulfohalobium retbaense DSM 5692 8417865 YP_003196942.1 CDS Dret_0062 NC_013223.1 82462 82578 D hypothetical protein 82462..82578 Desulfohalobium retbaense DSM 5692 8417866 YP_003196943.1 CDS Dret_0063 NC_013223.1 82604 82747 D hypothetical protein 82604..82747 Desulfohalobium retbaense DSM 5692 8417867 YP_003196944.1 CDS Dret_0064 NC_013223.1 82862 83926 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: oan:Oant_4496 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 82862..83926 Desulfohalobium retbaense DSM 5692 8417868 YP_003196945.1 CDS Dret_0065 NC_013223.1 84795 85904 D TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2562 pyridine nucleotide-disulfide oxidoreductase; pyridine nucleotide-disulfide oxidoreductase family protein 84795..85904 Desulfohalobium retbaense DSM 5692 8417869 YP_003196946.1 CDS Dret_0066 NC_013223.1 86168 86707 R PFAM: Ferritin Dps family protein; Rubrerythrin; KEGG: dvm:DvMF_1981 ferritin Dps family protein; ferritin Dps family protein complement(86168..86707) Desulfohalobium retbaense DSM 5692 8417870 YP_003196947.1 CDS Dret_0067 NC_013223.1 86664 87353 R hypothetical protein complement(86664..87353) Desulfohalobium retbaense DSM 5692 8417871 YP_003196948.1 CDS Dret_0068 NC_013223.1 87655 89748 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(87655..89748) Desulfohalobium retbaense DSM 5692 8417872 YP_003196949.1 CDS Dret_0069 NC_013223.1 89885 90511 R TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: dde:Dde_0278 radical SAM domain-containing protein; anaerobic ribonucleoside-triphosphate reductase activating protein complement(89885..90511) Desulfohalobium retbaense DSM 5692 8417873 YP_003196950.1 CDS Dret_0070 NC_013223.1 91055 91342 D PFAM: cysteine-rich small domain; KEGG: dma:DMR_05450 hypothetical protein; hypothetical protein 91055..91342 Desulfohalobium retbaense DSM 5692 8417874 YP_003196951.1 CDS Dret_0071 NC_013223.1 92311 92799 D KEGG: dps:DP0488 DctQ (C4-dicarboxylate permease, small subunit); DctQ (C4-dicarboxylate permease, small subunit) 92311..92799 Desulfohalobium retbaense DSM 5692 8417875 YP_003196952.1 CDS Dret_0072 NC_013223.1 92792 94090 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dps:DP0487 DctM (C4-dicarboxylate permease, large subunit); TRAP dicarboxylate transporter subunit DctM 92792..94090 Desulfohalobium retbaense DSM 5692 8417876 YP_003196953.1 CDS Dret_0073 NC_013223.1 94117 95109 D PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dps:DP0483 DctP (periplasmic C4-dicarboxylate binding protein); Extracellular solute-binding protein 94117..95109 Desulfohalobium retbaense DSM 5692 8417877 YP_003196954.1 CDS Dret_0074 NC_013223.1 95582 97477 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: dps:DP0482 sigma54-dependent transcriptional regulator; Fis family sigma-54 specific transcriptional regulator complement(95582..97477) Desulfohalobium retbaense DSM 5692 8417878 YP_003196955.1 CDS Dret_0075 NC_013223.1 97749 98843 D PFAM: NAD/NADP octopine/nopaline dehydrogenase; NAD- dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: glo:Glov_2392 NAD/NADP octopine/nopaline dehydrogenase; NAD/NADP octopine/nopaline dehydrogenase 97749..98843 Desulfohalobium retbaense DSM 5692 8417879 YP_003196956.1 CDS Dret_0076 NC_013223.1 99320 102208 R PFAM: DEAD/DEAH box helicase domain protein; Protein of unknown function DUF1998; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dma:DMR_45970 putative helicase; DEAD/DEAH box helicase complement(99320..102208) Desulfohalobium retbaense DSM 5692 8417880 YP_003196957.1 CDS Dret_0077 NC_013223.1 102208 103581 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dma:DMR_45950 response regulator; two component, sigma54 specific, transcriptional regulator, Fis family complement(102208..103581) Desulfohalobium retbaense DSM 5692 8417881 YP_003196958.1 CDS Dret_0078 NC_013223.1 103606 105033 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dvm:DvMF_2201 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(103606..105033) Desulfohalobium retbaense DSM 5692 8417882 YP_003196959.1 CDS Dret_0079 NC_013223.1 105309 106487 R PFAM: aminotransferase class I and II; KEGG: dvm:DvMF_2204 aminotransferase class I and II; class I and II aminotransferase complement(105309..106487) Desulfohalobium retbaense DSM 5692 8417883 YP_003196960.1 CDS Dret_0080 NC_013223.1 106922 107356 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2277 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 106922..107356 Desulfohalobium retbaense DSM 5692 8417884 YP_003196961.1 CDS Dret_0081 NC_013223.1 107346 109112 D KEGG: dvl:Dvul_2276 aldehyde ferredoxin oxidoreductase; PFAM: Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase 107346..109112 Desulfohalobium retbaense DSM 5692 8417885 YP_003196962.1 CDS Dret_0082 NC_013223.1 109380 112220 D KEGG: dal:Dalk_0107 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; PAS fold-3 domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3; PAC repeat-containing protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein; ATP-binding region ATPase domain protein; PAS/PAC sensor hybrid histidine kinase 109380..112220 Desulfohalobium retbaense DSM 5692 8417886 YP_003196963.1 CDS Dret_0083 NC_013223.1 112305 114560 R KEGG: dde:Dde_0106 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; DNA topoisomerase I complement(112305..114560) Desulfohalobium retbaense DSM 5692 8417887 YP_003196964.1 CDS era NC_013223.1 114610 115548 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 114610..115548 Desulfohalobium retbaense DSM 5692 8417888 YP_003196965.1 CDS Dret_0085 NC_013223.1 115576 116283 D PFAM: alanine racemase domain protein; KEGG: dma:DMR_46160 hypothetical protein; alanine racemase domain-containing protein 115576..116283 Desulfohalobium retbaense DSM 5692 8417889 YP_003196966.1 CDS Dret_0086 NC_013223.1 116843 117577 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: dde:Dde_3581 RNA methyltransferase TrmH, group 3; TrmH family RNA methyltransferase complement(116843..117577) Desulfohalobium retbaense DSM 5692 8417890 YP_003196967.1 CDS Dret_0087 NC_013223.1 117707 119569 D PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: dde:Dde_3580 peptidoglycan-binding LysM; Lytic transglycosylase catalytic 117707..119569 Desulfohalobium retbaense DSM 5692 8417891 YP_003196968.1 CDS Dret_0088 NC_013223.1 119747 120562 R TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: dvu:DVU0115 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase complement(119747..120562) Desulfohalobium retbaense DSM 5692 8417892 YP_003196969.1 CDS Dret_0089 NC_013223.1 120640 121197 R PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: dde:Dde_0046 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit; pyruvate/ketoisovalerate oxidoreductase complement(120640..121197) Desulfohalobium retbaense DSM 5692 8417893 YP_003196970.1 CDS Dret_0090 NC_013223.1 121194 121964 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dde:Dde_0045 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative; thiamine pyrophosphate TPP-binding domain-containing protein complement(121194..121964) Desulfohalobium retbaense DSM 5692 8417894 YP_003196971.1 CDS Dret_0091 NC_013223.1 121957 123036 R catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; 2-ketoisovalerate ferredoxin reductase complement(121957..123036) Desulfohalobium retbaense DSM 5692 8417895 YP_003196972.1 CDS Dret_0092 NC_013223.1 123026 123268 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0043 2-oxoglutarate ferredoxin oxidoreductase, delta subunit; 4Fe-4S ferredoxin complement(123026..123268) Desulfohalobium retbaense DSM 5692 8417896 YP_003196973.1 CDS queA NC_013223.1 123460 124551 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(123460..124551) Desulfohalobium retbaense DSM 5692 8417897 YP_003196974.1 CDS Dret_0094 NC_013223.1 124913 125872 D KEGG: dal:Dalk_3658 hypothetical protein; hypothetical protein 124913..125872 Desulfohalobium retbaense DSM 5692 8417898 YP_003196975.1 CDS Dret_0095 NC_013223.1 126452 128056 D TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dat:HRM2_09100 putative methyl-accepting chemotaxis protein; phosphonate ABC transporter substrate-binding protein 126452..128056 Desulfohalobium retbaense DSM 5692 8417899 YP_003196976.1 CDS Dret_0096 NC_013223.1 128053 129630 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gme:Gmet_2454 histidine kinase; histidine kinase 128053..129630 Desulfohalobium retbaense DSM 5692 8417900 YP_003196977.1 CDS Dret_0097 NC_013223.1 129627 130973 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: scl:sce5791 sigma-54 dependent DNA-binding response regulator; two component, sigma54 specific, transcriptional regulator, Fis family 129627..130973 Desulfohalobium retbaense DSM 5692 8417901 YP_003196978.1 CDS Dret_0098 NC_013223.1 131134 133569 D PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: dde:Dde_0604 pyruvate,water dikinase; pyruvate phosphate dikinase PEP/pyruvate- binding protein 131134..133569 Desulfohalobium retbaense DSM 5692 8417902 YP_003196979.1 CDS Dret_0099 NC_013223.1 133739 134851 D PFAM: Dual specificity protein phosphatase; SMART: Dual specificity phosphatase, subgroup, catalytic domain; KEGG: dde:Dde_0605 protein tyrosine phosphatase / dual specificity protein phosphatase; dual specificity protein phosphatase 133739..134851 Desulfohalobium retbaense DSM 5692 8417903 YP_003196980.1 CDS Dret_0100 NC_013223.1 135040 136242 R TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dvm:DvMF_2659 cysteine desulfurase NifS; cysteine desulfurase NifS complement(135040..136242) Desulfohalobium retbaense DSM 5692 8417904 YP_003196981.1 CDS Dret_0101 NC_013223.1 136239 137090 R TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dma:DMR_17100 nitrogen fixation protein NifU; Fe-S cluster assembly protein NifU complement(136239..137090) Desulfohalobium retbaense DSM 5692 8417905 YP_003196982.1 CDS Dret_0102 NC_013223.1 137214 138083 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: dal:Dalk_4375 protein of unknown function DUF6 transmembrane; hypothetical protein complement(137214..138083) Desulfohalobium retbaense DSM 5692 8417906 YP_003196983.1 CDS Dret_0103 NC_013223.1 138086 138430 R PFAM: protein of unknown function DUF1291; KEGG: dal:Dalk_4103 protein of unknown function DUF1291; hypothetical protein complement(138086..138430) Desulfohalobium retbaense DSM 5692 8417907 YP_003196984.1 CDS Dret_0104 NC_013223.1 138947 140266 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sfu:Sfum_3082 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein complement(138947..140266) Desulfohalobium retbaense DSM 5692 8417908 YP_003196985.1 CDS Dret_0105 NC_013223.1 140473 140922 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gur:Gura_1130 MarR family transcriptional regulator; transcriptional regulator, MarR family 140473..140922 Desulfohalobium retbaense DSM 5692 8417909 YP_003196986.1 CDS Dret_0106 NC_013223.1 141458 142153 R PFAM: regulatory protein MerR; KEGG: dde:Dde_0126 MerR family transcriptional regulator; regulatory protein MerR complement(141458..142153) Desulfohalobium retbaense DSM 5692 8417910 YP_003196987.1 CDS Dret_0107 NC_013223.1 142274 143521 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tgr:Tgr7_1569 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit 142274..143521 Desulfohalobium retbaense DSM 5692 8417911 YP_003196988.1 CDS Dret_0108 NC_013223.1 143518 146619 D PFAM: acriflavin resistance protein; KEGG: pca:Pcar_0669 AcrB/AcrD/AcrF family cation efflux protein; acriflavin resistance protein 143518..146619 Desulfohalobium retbaense DSM 5692 8417912 YP_003196989.1 CDS Dret_0109 NC_013223.1 146845 147420 D PFAM: NADPH-dependent FMN reductase; KEGG: sat:SYN_02920 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 146845..147420 Desulfohalobium retbaense DSM 5692 8417913 YP_003196990.1 CDS Dret_0110 NC_013223.1 147675 149789 D PFAM: AsmA family protein; KEGG: dal:Dalk_3707 AsmA family protein; AsmA family protein 147675..149789 Desulfohalobium retbaense DSM 5692 8417914 YP_003196991.1 CDS Dret_0111 NC_013223.1 149877 150668 D PFAM: alpha/beta hydrolase fold; KEGG: sfu:Sfum_3016 3-oxoadipate enol-lactonase; alpha/beta hydrolase fold protein 149877..150668 Desulfohalobium retbaense DSM 5692 8417915 YP_003196992.1 CDS Dret_0112 NC_013223.1 150812 151153 R PFAM: nitrogen regulatory protein P-II; KEGG: dde:Dde_3493 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(150812..151153) Desulfohalobium retbaense DSM 5692 8417916 YP_003196993.1 CDS Dret_0113 NC_013223.1 151165 152541 R TIGRFAM: ammonium transporter; PFAM: ammonium transporter; KEGG: dde:Dde_3492 ammonium transporter; ammonium transporter complement(151165..152541) Desulfohalobium retbaense DSM 5692 8417917 YP_003196994.1 CDS Dret_0114 NC_013223.1 153117 153920 D catalyzes the reversible formation of fructose 1,6-bisphosphate from glycerone phosphate and D-glyceraldehyde 3-phosphate; fructose-bisphosphate aldolase 153117..153920 Desulfohalobium retbaense DSM 5692 8417918 YP_003196995.1 CDS Dret_0115 NC_013223.1 153967 154938 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-aribino-heptulonate 7-phosphate; 3-dehydroquinate synthase 153967..154938 Desulfohalobium retbaense DSM 5692 8417919 YP_003196996.1 CDS Dret_0116 NC_013223.1 154942 156075 D TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; Chorismate mutase; KEGG: dvm:DvMF_1749 prephenate dehydratase; chorismate mutase 154942..156075 Desulfohalobium retbaense DSM 5692 8417920 YP_003196997.1 CDS Dret_0117 NC_013223.1 156078 157412 D KEGG: dma:DMR_05340 3-phosphoshikimate 1- carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); 3-phosphoshikimate 1-carboxyvinyltransferase 156078..157412 Desulfohalobium retbaense DSM 5692 8417921 YP_003196998.1 CDS Dret_0118 NC_013223.1 157412 158200 D PFAM: Prephenate dehydrogenase; KEGG: dvm:DvMF_1747 prephenate dehydrogenase; prephenate dehydrogenase 157412..158200 Desulfohalobium retbaense DSM 5692 8417922 YP_003196999.1 CDS Dret_0119 NC_013223.1 158436 159857 D PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; KEGG: dma:DMR_05320 anthranilate synthase component I; anthranilate synthase 158436..159857 Desulfohalobium retbaense DSM 5692 8417923 YP_003197000.1 CDS Dret_0120 NC_013223.1 159838 160410 D TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: dma:DMR_05310 anthranilate synthase component II; glutamine amidotransferase of anthranilate synthase 159838..160410 Desulfohalobium retbaense DSM 5692 8417924 YP_003197001.1 CDS Dret_0121 NC_013223.1 160436 161443 D KEGG: dvu:DVU0467 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; anthranilate phosphoribosyltransferase 160436..161443 Desulfohalobium retbaense DSM 5692 8417925 YP_003197002.1 CDS Dret_0122 NC_013223.1 161436 162254 D PFAM: Indole-3-glycerol phosphate synthase; KEGG: dvl:Dvul_2469 indole-3-glycerol-phosphate synthase; indole-3-glycerol-phosphate synthase 161436..162254 Desulfohalobium retbaense DSM 5692 8417926 YP_003197003.1 CDS Dret_0123 NC_013223.1 162259 162912 D PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dds:Ddes_1589 phosphoribosylanthranilate isomerase; Phosphoribosylanthranilate isomerase 162259..162912 Desulfohalobium retbaense DSM 5692 8417927 YP_003197004.1 CDS Dret_0124 NC_013223.1 163151 164356 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 163151..164356 Desulfohalobium retbaense DSM 5692 8417928 YP_003197005.1 CDS trpA NC_013223.1 164400 165167 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 164400..165167 Desulfohalobium retbaense DSM 5692 8417929 YP_003197006.1 CDS Dret_0126 NC_013223.1 165374 166030 D PFAM: sulfotransferase; KEGG: CG9550 gene product from transcript CG9550-RA; sulfotransferase 165374..166030 Desulfohalobium retbaense DSM 5692 8417930 YP_003197007.1 CDS Dret_0127 NC_013223.1 166683 167459 D PFAM: protein of unknown function DUF218; KEGG: spq:SPAB_02523 hypothetical protein; hypothetical protein 166683..167459 Desulfohalobium retbaense DSM 5692 8417931 YP_003197008.1 CDS Dret_0128 NC_013223.1 167972 168925 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pag:PLES_57731 putative glycine betaine/L- proline ABC transporter, periplasmic component; glycine/betaine ABC transporter substrate-binding protein complement(167972..168925) Desulfohalobium retbaense DSM 5692 8417932 YP_003197009.1 CDS Dret_0129 NC_013223.1 169059 170543 R TIGRFAM: betaine aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: reu:Reut_B5835 aldehyde dehydrogenase (acceptor); betaine aldehyde dehydrogenase complement(169059..170543) Desulfohalobium retbaense DSM 5692 8417933 YP_003197010.1 CDS Dret_0130 NC_013223.1 170552 172195 R TIGRFAM: choline dehydrogenase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: dal:Dalk_0705 choline dehydrogenase; choline dehydrogenase complement(170552..172195) Desulfohalobium retbaense DSM 5692 8417934 YP_003197011.1 CDS Dret_0131 NC_013223.1 172603 173073 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: scl:sce5381 MarR family transcriptional regulator; transcriptional regulator, MarR family 172603..173073 Desulfohalobium retbaense DSM 5692 8417935 YP_003197012.1 CDS Dret_0132 NC_013223.1 173216 173500 R KEGG: ade:Adeh_1817 hypothetical protein; hypothetical protein complement(173216..173500) Desulfohalobium retbaense DSM 5692 8417936 YP_003197013.1 CDS Dret_0133 NC_013223.1 173835 175046 R PFAM: protein of unknown function DUF482; KEGG: dma:DMR_08250 hypothetical protein; hypothetical protein complement(173835..175046) Desulfohalobium retbaense DSM 5692 8417937 YP_003197014.1 CDS Dret_0134 NC_013223.1 175287 176015 R PFAM: PHP domain protein; KEGG: dal:Dalk_5110 PHP domain protein; PHP domain-containing protein complement(175287..176015) Desulfohalobium retbaense DSM 5692 8417938 YP_003197015.1 CDS Dret_0135 NC_013223.1 176147 177172 R TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: dma:DMR_28310 cytochrome d ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II complement(176147..177172) Desulfohalobium retbaense DSM 5692 8417939 YP_003197016.1 CDS Dret_0136 NC_013223.1 177350 178654 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: dde:Dde_3204 cytochrome d ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(177350..178654) Desulfohalobium retbaense DSM 5692 8417940 YP_003197017.1 CDS Dret_0137 NC_013223.1 178671 179384 R KEGG: dde:Dde_0372 hypothetical protein; hypothetical protein complement(178671..179384) Desulfohalobium retbaense DSM 5692 8417941 YP_003197018.1 CDS Dret_0138 NC_013223.1 179501 180706 R PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: sfu:Sfum_3253 flavodoxin/nitric oxide synthase; beta-lactamase domain-containing protein complement(179501..180706) Desulfohalobium retbaense DSM 5692 8417942 YP_003197019.1 CDS Dret_0139 NC_013223.1 180980 181141 R PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_3222 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein complement(180980..181141) Desulfohalobium retbaense DSM 5692 8417943 YP_003197020.1 CDS Dret_0140 NC_013223.1 181333 181713 R TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: dma:DMR_17610 desulfoferrodoxin; desulfoferrodoxin complement(181333..181713) Desulfohalobium retbaense DSM 5692 8417944 YP_003197021.1 CDS Dret_0141 NC_013223.1 181968 182369 R PFAM: ferric-uptake regulator; KEGG: dps:DP2867 ferric uptake regulatory protein; ferric uptake regulator, Fur family complement(181968..182369) Desulfohalobium retbaense DSM 5692 8417945 YP_003197022.1 CDS Dret_0142 NC_013223.1 182491 184302 R KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; N-acetylmuramoyl-L-alanine amidase complement(182491..184302) Desulfohalobium retbaense DSM 5692 8417946 YP_003197023.1 CDS Dret_0143 NC_013223.1 184324 186147 R TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; KEGG: dde:Dde_0502 glutamine--fructose-6-phosphate transaminase; glucosamine/fructose-6-phosphate aminotransferase complement(184324..186147) Desulfohalobium retbaense DSM 5692 8417947 YP_003197024.1 CDS Dret_0144 NC_013223.1 186159 186788 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase complement(186159..186788) Desulfohalobium retbaense DSM 5692 8417948 YP_003197025.1 CDS Dret_0145 NC_013223.1 186886 189273 R PFAM: MscS Mechanosensitive ion channel; KEGG: dvm:DvMF_2529 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS complement(186886..189273) Desulfohalobium retbaense DSM 5692 8417949 YP_003197026.1 CDS Dret_0146 NC_013223.1 189631 190947 D KEGG: dvl:Dvul_0234 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme YliG 189631..190947 Desulfohalobium retbaense DSM 5692 8417950 YP_003197027.1 CDS rpsA NC_013223.1 191085 192812 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 191085..192812 Desulfohalobium retbaense DSM 5692 8417951 YP_003197028.1 CDS Dret_0148 NC_013223.1 192805 193695 D TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: dvm:DvMF_1703 signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 36K type 192805..193695 Desulfohalobium retbaense DSM 5692 8417952 YP_003197029.1 CDS Dret_0149 NC_013223.1 193688 194764 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dma:DMR_08720 hypothetical protein; radical SAM protein 193688..194764 Desulfohalobium retbaense DSM 5692 8417953 YP_003197030.1 CDS Dret_0150 NC_013223.1 194878 195030 D hypothetical protein 194878..195030 Desulfohalobium retbaense DSM 5692 8417954 YP_003197031.1 CDS Dret_0151 NC_013223.1 195260 195442 D hypothetical protein 195260..195442 Desulfohalobium retbaense DSM 5692 8417955 YP_003197032.1 CDS Dret_0152 NC_013223.1 195505 196905 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: sfu:Sfum_3200 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 195505..196905 Desulfohalobium retbaense DSM 5692 8417956 YP_003197033.1 CDS Dret_0153 NC_013223.1 197120 198196 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: dma:DMR_39140 glucose 1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(197120..198196) Desulfohalobium retbaense DSM 5692 8417957 YP_003197034.1 CDS Dret_0154 NC_013223.1 198245 198436 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_2933 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(198245..198436) Desulfohalobium retbaense DSM 5692 8417958 YP_003197035.1 CDS Dret_0155 NC_013223.1 199079 199570 D KEGG: tmz:Tmz1t_2118 hypothetical protein; hypothetical protein 199079..199570 Desulfohalobium retbaense DSM 5692 8417959 YP_003197036.1 CDS Dret_0156 NC_013223.1 199625 200317 D PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dvm:DvMF_1205 GntR domain protein; GntR family transcriptional regulator 199625..200317 Desulfohalobium retbaense DSM 5692 8417960 YP_003197037.1 CDS Dret_0157 NC_013223.1 200440 201450 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: dat:HRM2_12470 LldD; FMN-dependent alpha-hydroxy acid dehydrogenase 200440..201450 Desulfohalobium retbaense DSM 5692 8417961 YP_003197038.1 CDS Dret_0158 NC_013223.1 201464 202261 D PFAM: protein of unknown function DUF81; KEGG: dvl:Dvul_0529 hypothetical protein; hypothetical protein 201464..202261 Desulfohalobium retbaense DSM 5692 8417962 YP_003197039.1 CDS Dret_0159 NC_013223.1 202804 203313 R PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_1731 hypothetical protein; N-acetyltransferase GCN5 complement(202804..203313) Desulfohalobium retbaense DSM 5692 8417963 YP_003197040.1 CDS Dret_0160 NC_013223.1 203491 204273 R PFAM: anaerobic cobalt chelatase; KEGG: dvl:Dvul_1703 anaerobic cobalt chelatase; anaerobic cobalt chelatase complement(203491..204273) Desulfohalobium retbaense DSM 5692 8417964 YP_003197041.1 CDS Dret_0161 NC_013223.1 204270 205025 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1193 ATPase; ABC transporter complement(204270..205025) Desulfohalobium retbaense DSM 5692 8417965 YP_003197042.1 CDS Dret_0162 NC_013223.1 205018 205776 R TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dvl:Dvul_1937 cobalt ABC transporter, inner membrane subunit CbiQ; cobalt ABC transporter permease complement(205018..205776) Desulfohalobium retbaense DSM 5692 8417966 YP_003197043.1 CDS Dret_0163 NC_013223.1 205967 207106 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: dde:Dde_2559 beta-N-acetylhexosaminidase; glycoside hydrolase family 3 205967..207106 Desulfohalobium retbaense DSM 5692 8417967 YP_003197044.1 CDS Dret_0164 NC_013223.1 207223 208188 D PFAM: Twin-arginine translocation pathway, signal sequence; KEGG: dma:DMR_38630 iron-sulfur binding protein; hypothetical protein 207223..208188 Desulfohalobium retbaense DSM 5692 8417968 YP_003197045.1 CDS Dret_0165 NC_013223.1 208181 208642 D KEGG: dde:Dde_0656 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 208181..208642 Desulfohalobium retbaense DSM 5692 8417969 YP_003197046.1 CDS Dret_0166 NC_013223.1 209038 209679 R PFAM: cytochrome B561; KEGG: dvl:Dvul_0241 cytochrome b561; cytochrome B561 complement(209038..209679) Desulfohalobium retbaense DSM 5692 8417970 YP_003197047.1 CDS Dret_0167 NC_013223.1 209672 211345 R KEGG: dvl:Dvul_0242 cytochrome c family protein; Contains selenocysteine; cytochrome c family protein complement(209672..211345) Desulfohalobium retbaense DSM 5692 8417971 YP_003197048.1 CDS Dret_0168 NC_013223.1 211703 213091 D KEGG: dvm:DvMF_1692 PAS modulated sigma54 specific transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold domain protein; PAS fold-4 domain protein; SMART: AAA ATPase; PAS domain containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator 211703..213091 Desulfohalobium retbaense DSM 5692 8417972 YP_003197049.1 CDS Dret_0169 NC_013223.1 213286 213510 R KEGG: dps:DP1865 ferredoxin; ferredoxin complement(213286..213510) Desulfohalobium retbaense DSM 5692 8417973 YP_003197050.1 CDS Dret_0170 NC_013223.1 213796 214905 R KEGG: dma:DMR_25670 hypothetical protein; hypothetical protein complement(213796..214905) Desulfohalobium retbaense DSM 5692 8417974 YP_003197051.1 CDS Dret_0171 NC_013223.1 215007 217952 R PFAM: Glu/Leu/Phe/Val dehydrogenase; KEGG: dde:Dde_1382 glutamate dehydrogenase (NAD); Glu/Leu/Phe/Val dehydrogenase complement(215007..217952) Desulfohalobium retbaense DSM 5692 8417975 YP_003197052.1 CDS Dret_0172 NC_013223.1 218129 219526 R PFAM: Peptidase M23; KEGG: dde:Dde_3784 M24/M37 family peptidase; peptidase M23 complement(218129..219526) Desulfohalobium retbaense DSM 5692 8417976 YP_003197053.1 CDS Dret_0173 NC_013223.1 219570 219797 R PFAM: thiamineS protein; KEGG: dma:DMR_26290 hypothetical protein; hypothetical protein complement(219570..219797) Desulfohalobium retbaense DSM 5692 8417977 YP_003197054.1 CDS Dret_0174 NC_013223.1 220024 220644 R KEGG: gur:Gura_3547 hypothetical protein; hypothetical protein complement(220024..220644) Desulfohalobium retbaense DSM 5692 8417978 YP_003197055.1 CDS Dret_0175 NC_013223.1 220690 222426 R KEGG: gur:Gura_3550 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase complement(220690..222426) Desulfohalobium retbaense DSM 5692 8417979 YP_003197056.1 CDS Dret_0176 NC_013223.1 223008 225368 D PFAM: EAL domain protein; GGDEF domain containing protein; CBS domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; KEGG: dvm:DvMF_0617 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 223008..225368 Desulfohalobium retbaense DSM 5692 8417980 YP_003197057.1 CDS Dret_0177 NC_013223.1 225429 225686 R hypothetical protein complement(225429..225686) Desulfohalobium retbaense DSM 5692 8417981 YP_003197058.1 CDS Dret_0178 NC_013223.1 226313 227356 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pap:PSPA7_3488 ABC transporter permease; binding-protein-dependent transport system inner membrane protein complement(226313..227356) Desulfohalobium retbaense DSM 5692 8417982 YP_003197059.1 CDS Dret_0179 NC_013223.1 227364 228458 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psa:PST_2259 peptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(227364..228458) Desulfohalobium retbaense DSM 5692 8417983 YP_003197060.1 CDS Dret_0180 NC_013223.1 228572 230395 R PFAM: extracellular solute-binding protein family 5; KEGG: aeh:Mlg_2274 extracellular solute-binding protein; family 5 extracellular solute-binding protein complement(228572..230395) Desulfohalobium retbaense DSM 5692 8417984 YP_003197061.1 CDS Dret_0181 NC_013223.1 230570 231856 R PFAM: OmpA/MotB domain protein; Thrombospondin type 3 repeat; von Willebrand factor type A; KEGG: sat:SYN_00198 outer membrane porin protein; OmpA/MotB domain-containing protein complement(230570..231856) Desulfohalobium retbaense DSM 5692 8417985 YP_003197062.1 CDS Dret_0182 NC_013223.1 232292 232891 D PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_2198 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 232292..232891 Desulfohalobium retbaense DSM 5692 8417986 YP_003197063.1 CDS Dret_0183 NC_013223.1 233075 233860 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: dds:Ddes_0652 molybdenum cofactor synthesis domain protein; molybdenum cofactor synthesis domain-containing protein 233075..233860 Desulfohalobium retbaense DSM 5692 8417987 YP_003197064.1 CDS Dret_0184 NC_013223.1 233826 235493 D PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; KEGG: acp:A2cp1_0659 PAS/PAC sensor signal transduction histidine kinase; signal transduction histidine kinase, nitrogen specific, NtrB 233826..235493 Desulfohalobium retbaense DSM 5692 8417988 YP_003197065.1 CDS Dret_0185 NC_013223.1 235493 236632 D PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_06688 spermidine/putrescine-binding periplasmic protein; extracellular solute-binding protein 235493..236632 Desulfohalobium retbaense DSM 5692 8417989 YP_003197066.1 CDS Dret_0186 NC_013223.1 236698 239130 D PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gme:Gmet_2426 Hpt sensor hybrid histidine kinase; histidine kinase 236698..239130 Desulfohalobium retbaense DSM 5692 8417990 YP_003197067.1 CDS Dret_0187 NC_013223.1 239360 240661 D PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: pca:Pcar_2050 hypothetical protein; hypothetical protein 239360..240661 Desulfohalobium retbaense DSM 5692 8417991 YP_003197068.1 CDS Dret_0188 NC_013223.1 240795 240956 R KEGG: dvl:Dvul_1412 hypothetical protein; hypothetical protein complement(240795..240956) Desulfohalobium retbaense DSM 5692 8417992 YP_003197069.1 CDS Dret_0189 NC_013223.1 241089 241724 R PFAM: Peptidase S24, S26A and S26B, conserved region; CI repressor; KEGG: dma:DMR_33970 hypothetical protein; putative phage repressor complement(241089..241724) Desulfohalobium retbaense DSM 5692 8417993 YP_003197070.1 CDS Dret_0190 NC_013223.1 241983 242927 D PFAM: Patatin; KEGG: pna:Pnap_4178 patatin; patatin 241983..242927 Desulfohalobium retbaense DSM 5692 8417994 YP_003197071.1 CDS Dret_0191 NC_013223.1 243074 243553 R PFAM: Rubrerythrin; KEGG: dde:Dde_1214 hypothetical protein; rubrerythrin complement(243074..243553) Desulfohalobium retbaense DSM 5692 8417995 YP_003197072.1 CDS Dret_0192 NC_013223.1 243569 244414 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dma:DMR_01960 putative oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(243569..244414) Desulfohalobium retbaense DSM 5692 8417996 YP_003197073.1 CDS Dret_0193 NC_013223.1 244407 245456 R KEGG: dma:DMR_01950 iron-sulfur binding protein; iron-sulfur binding protein complement(244407..245456) Desulfohalobium retbaense DSM 5692 8417997 YP_003197074.1 CDS Dret_0194 NC_013223.1 245456 246412 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: dvl:Dvul_0829 methyl-viologen-reducing hydrogenase, delta subunit; 4Fe-4S ferredoxin complement(245456..246412) Desulfohalobium retbaense DSM 5692 8417998 YP_003197075.1 CDS Dret_0195 NC_013223.1 246440 246886 R PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_3527 hydrogenase, iron-sulfur cluster- binding subunit, putative; methyl-viologen-reducing hydrogenase delta subunit complement(246440..246886) Desulfohalobium retbaense DSM 5692 8417999 YP_003197076.1 CDS Dret_0196 NC_013223.1 246853 248835 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dma:DMR_01920 heterodisulfide reductase subunit A; 4Fe-4S ferredoxin complement(246853..248835) Desulfohalobium retbaense DSM 5692 8418000 YP_003197077.1 CDS Dret_0197 NC_013223.1 248921 249823 R PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dde:Dde_1208 succinate dehydrogenase subunit C; CoB--CoM heterodisulfide reductase complement(248921..249823) Desulfohalobium retbaense DSM 5692 8418001 YP_003197078.1 CDS Dret_0198 NC_013223.1 249826 250467 R KEGG: dma:DMR_01900 heterodisulfide reductase subunit C; heterodisulfide reductase subunit C complement(249826..250467) Desulfohalobium retbaense DSM 5692 8418002 YP_003197079.1 CDS Dret_0199 NC_013223.1 250600 251781 R PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3523 alcohol dehydrogenase, iron- containing; iron-containing alcohol dehydrogenase complement(250600..251781) Desulfohalobium retbaense DSM 5692 8418003 YP_003197080.1 CDS Dret_0200 NC_013223.1 252195 253544 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: dma:DMR_02400 NtrC family two-component response regulator; two component, sigma54 specific, transcriptional regulator, Fis family complement(252195..253544) Desulfohalobium retbaense DSM 5692 8418004 YP_003197081.1 CDS Dret_0201 NC_013223.1 253513 254739 R PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3535 histidine kinase; PAS/PAC sensor signal transduction histidine kinase complement(253513..254739) Desulfohalobium retbaense DSM 5692 8418005 YP_003197082.1 CDS Dret_0202 NC_013223.1 254739 255881 R PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3534 alcohol dehydrogenase, iron- containing; iron-containing alcohol dehydrogenase complement(254739..255881) Desulfohalobium retbaense DSM 5692 8418006 YP_003197083.1 CDS Dret_0203 NC_013223.1 256121 256429 R PFAM: Hpt domain protein; KEGG: sat:SYN_00227 putative cytoplasmic protein; Hpt protein complement(256121..256429) Desulfohalobium retbaense DSM 5692 8418007 YP_003197084.1 CDS Dret_0204 NC_013223.1 256461 257687 R PFAM: Phosphoglycerate mutase; 6-phosphofructo-2- kinase; KEGG: dde:Dde_0511 6-phosphofructo-2-kinase; phosphoglycerate mutase complement(256461..257687) Desulfohalobium retbaense DSM 5692 8418008 YP_003197085.1 CDS Dret_0205 NC_013223.1 257680 260949 R PFAM: acriflavin resistance protein; KEGG: dal:Dalk_2343 acriflavin resistance protein; acriflavin resistance protein complement(257680..260949) Desulfohalobium retbaense DSM 5692 8418009 YP_003197086.1 CDS Dret_0206 NC_013223.1 260939 262099 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dal:Dalk_2344 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(260939..262099) Desulfohalobium retbaense DSM 5692 8418010 YP_003197087.1 CDS Dret_0207 NC_013223.1 262116 263687 R PFAM: outer membrane efflux protein; KEGG: dal:Dalk_2345 outer membrane efflux protein; outer membrane efflux protein complement(262116..263687) Desulfohalobium retbaense DSM 5692 8418011 YP_003197088.1 CDS Dret_0208 NC_013223.1 264013 264819 R PFAM: protein of unknown function DUF52; KEGG: dma:DMR_31670 hypothetical protein; hypothetical protein complement(264013..264819) Desulfohalobium retbaense DSM 5692 8418012 YP_003197089.1 CDS Dret_0209 NC_013223.1 265056 265850 R similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase complement(265056..265850) Desulfohalobium retbaense DSM 5692 8418013 YP_003197090.1 CDS Dret_0210 NC_013223.1 265850 266272 R PFAM: NikR nickel binding; CopG domain protein DNA- binding domain protein; KEGG: dvl:Dvul_0474 nickel responsive regulator; CopG family transcriptional regulator complement(265850..266272) Desulfohalobium retbaense DSM 5692 8418014 YP_003197091.1 CDS Dret_0211 NC_013223.1 266405 267049 R PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: dma:DMR_31760 hypothetical protein; type 12 methyltransferase complement(266405..267049) Desulfohalobium retbaense DSM 5692 8418015 YP_003197092.1 CDS Dret_0212 NC_013223.1 267049 268539 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1510 ATPase; ABC transporter complement(267049..268539) Desulfohalobium retbaense DSM 5692 8418016 YP_003197093.1 CDS Dret_0213 NC_013223.1 268536 269027 R PFAM: phosphoribosyltransferase; KEGG: dde:Dde_1506 xanthine-guanine phosphoribosyltransferase; Xanthine phosphoribosyltransferase complement(268536..269027) Desulfohalobium retbaense DSM 5692 8418017 YP_003197094.1 CDS Dret_0214 NC_013223.1 269059 269979 R PFAM: inner-membrane translocator; KEGG: dvm:DvMF_3028 inner-membrane translocator; inner-membrane translocator complement(269059..269979) Desulfohalobium retbaense DSM 5692 8418018 YP_003197095.1 CDS Dret_0215 NC_013223.1 270072 271139 R PFAM: inner-membrane translocator; KEGG: dps:DP0678 sugar ABC transporter, permease protein; inner-membrane translocator complement(270072..271139) Desulfohalobium retbaense DSM 5692 8418019 YP_003197096.1 CDS Dret_0216 NC_013223.1 271242 272306 R PFAM: basic membrane lipoprotein; KEGG: dvl:Dvul_1927 basic membrane lipoprotein; basic membrane lipoprotein complement(271242..272306) Desulfohalobium retbaense DSM 5692 8418020 YP_003197097.1 CDS Dret_0217 NC_013223.1 272471 273442 D PFAM: class II aldolase/adducin family protein; protein of unknown function UPF0066; KEGG: dde:Dde_3569 hypothetical protein; class II aldolase/adducin family protein 272471..273442 Desulfohalobium retbaense DSM 5692 8418021 YP_003197098.1 CDS Dret_0218 NC_013223.1 273519 274367 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(273519..274367) Desulfohalobium retbaense DSM 5692 8418022 YP_003197099.1 CDS Dret_0219 NC_013223.1 274372 275535 R KEGG: dvu:DVU1801 hypothetical protein; hypothetical protein complement(274372..275535) Desulfohalobium retbaense DSM 5692 8418023 YP_003197100.1 CDS Dret_0220 NC_013223.1 275536 276039 R KEGG: dde:Dde_3459 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(275536..276039) Desulfohalobium retbaense DSM 5692 8418024 YP_003197101.1 CDS Dret_0221 NC_013223.1 276036 277319 R KEGG: dde:Dde_3458 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; phosphoribosylamine/glycine ligase complement(276036..277319) Desulfohalobium retbaense DSM 5692 8418025 YP_003197102.1 CDS Dret_0222 NC_013223.1 277558 279231 D PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dvl:Dvul_1002 hydantoinase/oxoprolinase; hydantoinase/oxoprolinase 277558..279231 Desulfohalobium retbaense DSM 5692 8418026 YP_003197103.1 CDS Dret_0223 NC_013223.1 279225 280565 D PFAM: histone deacetylase superfamily; KEGG: dde:Dde_2337 histone deacetylase family protein; histone deacetylase 279225..280565 Desulfohalobium retbaense DSM 5692 8418027 YP_003197104.1 CDS Dret_0224 NC_013223.1 280673 281728 D KEGG: dps:DP0721 hypothetical protein; hypothetical protein 280673..281728 Desulfohalobium retbaense DSM 5692 8418028 YP_003197105.1 CDS Dret_0225 NC_013223.1 282419 282637 D KEGG: dvm:DvMF_1218 hypothetical protein; hypothetical protein 282419..282637 Desulfohalobium retbaense DSM 5692 8418029 YP_003197106.1 CDS Dret_0226 NC_013223.1 282666 285683 D Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; Twin-arginine translocation pathway, signal sequence; KEGG: dvm:DvMF_1217 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 282666..285683 Desulfohalobium retbaense DSM 5692 8418030 YP_003197107.1 CDS Dret_0227 NC_013223.1 285717 286445 D KEGG: dde:Dde_0718 formate dehydrogenase, beta subunit, putative; formate dehydrogenase subunit beta 285717..286445 Desulfohalobium retbaense DSM 5692 8418031 YP_003197108.1 CDS Dret_0228 NC_013223.1 286705 287649 D TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dvl:Dvul_2728 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter substrate-binding protein 286705..287649 Desulfohalobium retbaense DSM 5692 8418032 YP_003197109.1 CDS Dret_0229 NC_013223.1 287642 289747 D KEGG: dvm:DvMF_2189 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 287642..289747 Desulfohalobium retbaense DSM 5692 8418033 YP_003197110.1 CDS Dret_0230 NC_013223.1 289716 289835 D hypothetical protein 289716..289835 Desulfohalobium retbaense DSM 5692 8418034 YP_003197111.1 CDS Dret_0231 NC_013223.1 289916 290278 D PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dma:DMR_38710 response regulator receiver protein; response regulator receiver protein 289916..290278 Desulfohalobium retbaense DSM 5692 8418035 YP_003197112.1 CDS Dret_0232 NC_013223.1 290664 295196 D PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamine amidotransferase class-II; KEGG: gur:Gura_0393 glutamate synthase (ferredoxin); Glutamate synthase (ferredoxin) 290664..295196 Desulfohalobium retbaense DSM 5692 8418036 YP_003197113.1 CDS Dret_0233 NC_013223.1 295313 296158 D PFAM: peptidase M48 Ste24p; KEGG: dvm:DvMF_0946 peptidase M48 Ste24p; peptidase M48 Ste24p 295313..296158 Desulfohalobium retbaense DSM 5692 8418037 YP_003197114.1 CDS Dret_0234 NC_013223.1 296455 297024 D KEGG: sfu:Sfum_1145 hypothetical protein; hypothetical protein 296455..297024 Desulfohalobium retbaense DSM 5692 8418038 YP_003197115.1 CDS Dret_0235 NC_013223.1 297062 298060 D PFAM: Nitrate reductase gamma subunit; KEGG: sfu:Sfum_1146 nitrate reductase, gamma subunit; Nitrate reductase gamma subunit 297062..298060 Desulfohalobium retbaense DSM 5692 8418039 YP_003197116.1 CDS Dret_0236 NC_013223.1 298064 299668 D KEGG: sfu:Sfum_1147 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 298064..299668 Desulfohalobium retbaense DSM 5692 8418040 YP_003197117.1 CDS Dret_0237 NC_013223.1 299673 300092 D KEGG: dde:Dde_2273 cytochrome c family protein; cytochrome c family protein 299673..300092 Desulfohalobium retbaense DSM 5692 8418041 YP_003197118.1 CDS Dret_0238 NC_013223.1 300085 300861 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Twin-arginine translocation pathway, signal sequence; KEGG: dvl:Dvul_1778 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 300085..300861 Desulfohalobium retbaense DSM 5692 8418042 YP_003197119.1 CDS Dret_0239 NC_013223.1 300874 302034 D PFAM: Polysulphide reductase NrfD; KEGG: dvu:DVU1286 reductase, transmembrane subunit, putative; polysulfide reductase NrfD 300874..302034 Desulfohalobium retbaense DSM 5692 8418043 YP_003197120.1 CDS Dret_0240 NC_013223.1 302392 302580 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_2120 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 302392..302580 Desulfohalobium retbaense DSM 5692 8418044 YP_003197121.1 CDS Dret_0241 NC_013223.1 302894 303613 D KEGG: dma:DMR_39580 hypothetical protein; hypothetical protein 302894..303613 Desulfohalobium retbaense DSM 5692 8418045 YP_003197122.1 CDS Dret_0242 NC_013223.1 303617 303964 D KEGG: dde:Dde_3773 hypothetical protein; hypothetical protein 303617..303964 Desulfohalobium retbaense DSM 5692 8418046 YP_003197123.1 CDS Dret_0243 NC_013223.1 304057 304683 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: dma:DMR_39600 hypothetical protein; hypothetical protein 304057..304683 Desulfohalobium retbaense DSM 5692 8418047 YP_003197124.1 CDS Dret_0244 NC_013223.1 304913 306226 D KEGG: dol:Dole_2669 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type alpha subunit 304913..306226 Desulfohalobium retbaense DSM 5692 8418048 YP_003197125.1 CDS Dret_0245 NC_013223.1 306243 307442 D KEGG: dol:Dole_2670 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; sulfite reductase, dissimilatory-type beta subunit 306243..307442 Desulfohalobium retbaense DSM 5692 8418049 YP_003197126.1 CDS Dret_0246 NC_013223.1 307505 307744 D PFAM: Dissimilatory sulfite reductase D; KEGG: dol:Dole_2671 dissimilatory sulfite reductase D; dissimilatory sulfite reductase D 307505..307744 Desulfohalobium retbaense DSM 5692 8418050 YP_003197127.1 CDS Dret_0247 NC_013223.1 307756 309147 D TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; Cobyrinic acid ac-diamide synthase; KEGG: dma:DMR_03630 putative Dsr related protein; cobyrinic acid a,c-diamide synthase 307756..309147 Desulfohalobium retbaense DSM 5692 8418051 YP_003197128.1 CDS Dret_0248 NC_013223.1 309578 309922 D KEGG: dal:Dalk_2382 hypothetical protein; hypothetical protein 309578..309922 Desulfohalobium retbaense DSM 5692 8418052 YP_003197129.1 CDS Dret_0249 NC_013223.1 310174 310824 D KEGG: dde:Dde_3467 hypothetical protein; hypothetical protein 310174..310824 Desulfohalobium retbaense DSM 5692 8418053 YP_003197130.1 CDS Dret_0250 NC_013223.1 310847 312124 R KEGG: dvm:DvMF_2764 hypothetical protein; hypothetical protein complement(310847..312124) Desulfohalobium retbaense DSM 5692 8418054 YP_003197131.1 CDS Dret_0251 NC_013223.1 312574 315234 D TIGRFAM: valyl-tRNA synthetase; KEGG: dde:Dde_2839 valyl-tRNA synthetase; valyl-tRNA synthetase 312574..315234 Desulfohalobium retbaense DSM 5692 8418055 YP_003197132.1 CDS Dret_0252 NC_013223.1 315245 316780 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dvl:Dvul_2236 uroporphyrin-III C- methyltransferase; uroporphyrin-III C-methyltransferase 315245..316780 Desulfohalobium retbaense DSM 5692 8418056 YP_003197133.1 CDS Dret_0253 NC_013223.1 316828 317517 D TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: dma:DMR_44060 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 316828..317517 Desulfohalobium retbaense DSM 5692 8418057 YP_003197134.1 CDS Dret_0254 NC_013223.1 317658 318482 D KEGG: dma:DMR_16970 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; zinc finger Fpg domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase 317658..318482 Desulfohalobium retbaense DSM 5692 8418058 YP_003197135.1 CDS Dret_0255 NC_013223.1 318494 319201 R PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dvl:Dvul_0752 phosphoribosylanthranilate isomerase; N-(5 -phosphoribosyl)anthranilate isomerase complement(318494..319201) Desulfohalobium retbaense DSM 5692 8418059 YP_003197136.1 CDS Dret_0256 NC_013223.1 319289 319837 R PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: tdn:Suden_1179 tellurite resistance protein TehB; type 12 methyltransferase complement(319289..319837) Desulfohalobium retbaense DSM 5692 8418060 YP_003197137.1 CDS Dret_0257 NC_013223.1 319830 320102 R KEGG: dma:DMR_03400 hypothetical protein; hypothetical protein complement(319830..320102) Desulfohalobium retbaense DSM 5692 8418061 YP_003197138.1 CDS Dret_0258 NC_013223.1 320167 320829 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dal:Dalk_1233 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase complement(320167..320829) Desulfohalobium retbaense DSM 5692 8418062 YP_003197139.1 CDS Dret_0259 NC_013223.1 320851 321921 R PFAM: protein of unknown function UPF0118; KEGG: dol:Dole_2006 hypothetical protein; hypothetical protein complement(320851..321921) Desulfohalobium retbaense DSM 5692 8418063 YP_003197140.1 CDS Dret_0260 NC_013223.1 322105 323952 R PFAM: Carboxylyase-related protein; KEGG: dvu:DVU2320 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein; Carboxylyase-like protein complement(322105..323952) Desulfohalobium retbaense DSM 5692 8418064 YP_003197141.1 CDS Dret_0261 NC_013223.1 324013 324411 R PFAM: FxsA cytoplasmic membrane protein; KEGG: dat:HRM2_32730 FsxA; FxsA cytoplasmic membrane protein complement(324013..324411) Desulfohalobium retbaense DSM 5692 8418065 YP_003197142.1 CDS Dret_0262 NC_013223.1 324577 324852 R hypothetical protein complement(324577..324852) Desulfohalobium retbaense DSM 5692 8418066 YP_003197143.1 CDS Dret_0263 NC_013223.1 324962 325531 R PFAM: isochorismatase hydrolase; KEGG: ppd:Ppro_2976 isochorismatase hydrolase; isochorismatase hydrolase complement(324962..325531) Desulfohalobium retbaense DSM 5692 8418067 YP_003197144.1 CDS Dret_0264 NC_013223.1 325641 326855 R KEGG: dma:DMR_33050 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD- superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; amino acid-binding ACT domain protein; HAD- superfamily hydrolase subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB complement(325641..326855) Desulfohalobium retbaense DSM 5692 8418068 YP_003197145.1 CDS Dret_0265 NC_013223.1 327349 328302 D KEGG: dde:Dde_2137 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA 327349..328302 Desulfohalobium retbaense DSM 5692 8418069 YP_003197146.1 CDS Dret_0266 NC_013223.1 328370 330070 D PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2138 periplasmic (NiFe) hydrogenase, large subunit, isozyme 1; nickel-dependent hydrogenase large subunit 328370..330070 Desulfohalobium retbaense DSM 5692 8418070 YP_003197147.1 CDS Dret_0267 NC_013223.1 330432 330929 D TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dvl:Dvul_1244 hydrogenase expression/formation protein; hydrogenase expression/formation protein 330432..330929 Desulfohalobium retbaense DSM 5692 8418071 YP_003197148.1 CDS Dret_0268 NC_013223.1 330945 331181 D TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dds:Ddes_0384 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF 330945..331181 Desulfohalobium retbaense DSM 5692 8418072 YP_003197149.1 CDS Dret_0269 NC_013223.1 331286 332707 D KEGG: dma:DMR_18000 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose- 6-phosphate isomerase 331286..332707 Desulfohalobium retbaense DSM 5692 8418073 YP_003197150.1 CDS Dret_0270 NC_013223.1 333097 333633 D KEGG: dde:Dde_2932 hypothetical protein; hypothetical protein 333097..333633 Desulfohalobium retbaense DSM 5692 8418074 YP_003197151.1 CDS Dret_0271 NC_013223.1 333651 335717 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dde:Dde_2933 molybdopterin oxidoreductase, molybdopterin-binding subunit, putative; molybdopterin oxidoreductase 333651..335717 Desulfohalobium retbaense DSM 5692 8418075 YP_003197152.1 CDS Dret_0272 NC_013223.1 335730 336506 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2270 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 335730..336506 Desulfohalobium retbaense DSM 5692 8418076 YP_003197153.1 CDS Dret_0273 NC_013223.1 336510 337739 D KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit, putative; molybdopterin oxidoreductase, transmembrane subunit 336510..337739 Desulfohalobium retbaense DSM 5692 8418077 YP_003197154.1 CDS Dret_0274 NC_013223.1 337891 338382 R KEGG: bja:bll7773 hypothetical protein; hypothetical protein complement(337891..338382) Desulfohalobium retbaense DSM 5692 8418078 YP_003197155.1 CDS Dret_0275 NC_013223.1 338393 338953 R KEGG: hha:Hhal_1487 hypothetical protein; hypothetical protein complement(338393..338953) Desulfohalobium retbaense DSM 5692 8418079 YP_003197156.1 CDS Dret_0276 NC_013223.1 339230 340450 D PFAM: peptidase M29 aminopeptidase II; KEGG: dol:Dole_2013 peptidase M29 aminopeptidase II; peptidase M29 aminopeptidase II 339230..340450 Desulfohalobium retbaense DSM 5692 8418080 YP_003197157.1 CDS Dret_0277 NC_013223.1 340546 341523 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: dma:DMR_31000 hypothetical membrane protein; hypothetical protein 340546..341523 Desulfohalobium retbaense DSM 5692 8418081 YP_003197158.1 CDS Dret_0278 NC_013223.1 341578 342225 D KEGG: dvu:DVU0579 molybdopterin-guanine dinucleotide biosynthesis protein A, putative; molybdopterin-guanine dinucleotide biosynthesis protein A 341578..342225 Desulfohalobium retbaense DSM 5692 8418082 YP_003197159.1 CDS Dret_0279 NC_013223.1 342354 343238 D PFAM: formate dehydrogenase accessory protein; KEGG: dde:Dde_0706 formate dehydrogenase formation protein FdhE, putative; formate dehydrogenase accessory protein 342354..343238 Desulfohalobium retbaense DSM 5692 8418083 YP_003197160.1 CDS Dret_0280 NC_013223.1 343344 344528 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mca:MCA2125 aminotransferase; Glutamine--scyllo-inositol transaminase 343344..344528 Desulfohalobium retbaense DSM 5692 8418084 YP_003197161.1 CDS Dret_0281 NC_013223.1 344557 344709 D hypothetical protein 344557..344709 Desulfohalobium retbaense DSM 5692 8418085 YP_003197162.1 CDS Dret_0282 NC_013223.1 344824 345876 D PFAM: glycosyl transferase family 9; KEGG: dvu:DVU0998 heptosyltransferase family protein; glycosyl transferase family protein 344824..345876 Desulfohalobium retbaense DSM 5692 8418086 YP_003197163.1 CDS Dret_0283 NC_013223.1 345965 349153 D PFAM: SNF2-related protein; zinc finger SWIM domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dvm:DvMF_0789 non-specific serine/threonine protein kinase; SNF2-like protein 345965..349153 Desulfohalobium retbaense DSM 5692 8418087 YP_003197164.1 CDS Dret_0284 NC_013223.1 349660 350223 R KEGG: mca:MCA0837 hypothetical protein; hypothetical protein complement(349660..350223) Desulfohalobium retbaense DSM 5692 8418088 YP_003197165.1 CDS Dret_0285 NC_013223.1 350712 352922 R PFAM: Oligosaccharyl transferase STT3 subunit; KEGG: dvl:Dvul_1810 hypothetical protein; oligosaccharyl transferase STT3 subunit complement(350712..352922) Desulfohalobium retbaense DSM 5692 8418089 YP_003197166.1 CDS Dret_0286 NC_013223.1 352968 353762 R KEGG: smd:Smed_4582 sulfotransferase; hypothetical protein complement(352968..353762) Desulfohalobium retbaense DSM 5692 8418090 YP_003197167.1 CDS Dret_0287 NC_013223.1 354987 356234 R PFAM: O-antigen polymerase; KEGG: dat:HRM2_25350 hypothetical protein; O-antigen polymerase complement(354987..356234) Desulfohalobium retbaense DSM 5692 8418091 YP_003197168.1 CDS Dret_0288 NC_013223.1 356239 357354 R PFAM: glycosyl transferase group 1; KEGG: geo:Geob_2965 glycosyl transferase group 1; group 1 glycosyl transferase complement(356239..357354) Desulfohalobium retbaense DSM 5692 8418092 YP_003197169.1 CDS Dret_0289 NC_013223.1 357323 359125 R KEGG: dde:Dde_1960 lipid A export ATP- binding/permease protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA complement(357323..359125) Desulfohalobium retbaense DSM 5692 8418093 YP_003197170.1 CDS Dret_0290 NC_013223.1 359338 360306 R PFAM: polysaccharide deacetylase; KEGG: smt:Smal_2837 polysaccharide deacetylase; polysaccharide deacetylase complement(359338..360306) Desulfohalobium retbaense DSM 5692 8418094 YP_003197171.1 CDS Dret_0291 NC_013223.1 360297 361427 R PFAM: glycosyl transferase group 1; KEGG: dvu:DVU2635 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase complement(360297..361427) Desulfohalobium retbaense DSM 5692 8418095 YP_003197172.1 CDS Dret_0292 NC_013223.1 361500 363233 R TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_2715 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ complement(361500..363233) Desulfohalobium retbaense DSM 5692 8418096 YP_003197173.1 CDS Dret_0293 NC_013223.1 363508 364209 R KEGG: dvl:Dvul_2083 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase complement(363508..364209) Desulfohalobium retbaense DSM 5692 8418097 YP_003197174.1 CDS Dret_0294 NC_013223.1 364202 364840 R KEGG: dvl:Dvul_2084 guanylate kinase; TIGRFAM: guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase complement(364202..364840) Desulfohalobium retbaense DSM 5692 8418098 YP_003197175.1 CDS Dret_0295 NC_013223.1 364827 365093 R PFAM: protein of unknown function DUF370; KEGG: dvm:DvMF_1139 hypothetical protein; hypothetical protein complement(364827..365093) Desulfohalobium retbaense DSM 5692 8418099 YP_003197176.1 CDS Dret_0296 NC_013223.1 365270 366151 R PFAM: domain of unknown function DUF1732; YicC domain protein; KEGG: dvl:Dvul_2086 hypothetical protein; hypothetical protein complement(365270..366151) Desulfohalobium retbaense DSM 5692 8418100 YP_003197177.1 CDS Dret_0297 NC_013223.1 366376 366948 R KEGG: dma:DMR_32830 hypothetical protein; hypothetical protein complement(366376..366948) Desulfohalobium retbaense DSM 5692 8418101 YP_003197178.1 CDS Dret_0298 NC_013223.1 366998 368293 R KEGG: dde:Dde_2722 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein complement(366998..368293) Desulfohalobium retbaense DSM 5692 8418102 YP_003197179.1 CDS Dret_0299 NC_013223.1 368298 369347 R TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; PFAM: tRNA methyl transferase-like; KEGG: dma:DMR_17320 putative tRNA uridine- sulfurtransferase; tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase complement(368298..369347) Desulfohalobium retbaense DSM 5692 8418103 YP_003197180.1 CDS gatA NC_013223.1 369509 370978 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(369509..370978) Desulfohalobium retbaense DSM 5692 8418104 YP_003197181.1 CDS Dret_0301 NC_013223.1 371048 371332 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: dma:DMR_17350 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; glutamyl-tRNA(Gln) amidotransferase subunit C complement(371048..371332) Desulfohalobium retbaense DSM 5692 8418105 YP_003197182.1 CDS Dret_0302 NC_013223.1 371475 373592 R KEGG: dvl:Dvul_2167 hypothetical protein; hypothetical protein complement(371475..373592) Desulfohalobium retbaense DSM 5692 8418106 YP_003197183.1 CDS dnaK NC_013223.1 374128 376041 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(374128..376041) Desulfohalobium retbaense DSM 5692 8418107 YP_003197184.1 CDS Dret_0304 NC_013223.1 376122 376709 R PFAM: GrpE protein; KEGG: dde:Dde_1025 heat shock protein GrpE; GrpE protein HSP-70 cofactor complement(376122..376709) Desulfohalobium retbaense DSM 5692 8418108 YP_003197185.1 CDS Dret_0305 NC_013223.1 376849 377877 R TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: dde:Dde_1026 heat-inducible transcription repressor HrcA; heat-inducible transcription repressor HrcA complement(376849..377877) Desulfohalobium retbaense DSM 5692 8418109 YP_003197186.1 CDS Dret_0306 NC_013223.1 377898 378779 R KEGG: dvl:Dvul_1705 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; NAD- dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase complement(377898..378779) Desulfohalobium retbaense DSM 5692 8418110 YP_003197187.1 CDS Dret_0307 NC_013223.1 378766 379785 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; KEGG: dvl:Dvul_1704 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(378766..379785) Desulfohalobium retbaense DSM 5692 8418111 YP_003197188.1 CDS Dret_0308 NC_013223.1 379955 380884 R TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: dde:Dde_2409 K+-dependent Na+/Ca+ exchanger related-protein; CaCA family Na+/Ca+ antiporter complement(379955..380884) Desulfohalobium retbaense DSM 5692 8418112 YP_003197189.1 CDS Dret_0309 NC_013223.1 380952 382001 R KEGG: dma:DMR_43250 hypothetical protein; hypothetical protein complement(380952..382001) Desulfohalobium retbaense DSM 5692 8418113 YP_003197190.1 CDS recA NC_013223.1 382259 383326 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 382259..383326 Desulfohalobium retbaense DSM 5692 8418114 YP_003197191.1 CDS alaS NC_013223.1 383393 386035 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 383393..386035 Desulfohalobium retbaense DSM 5692 8418115 YP_003197192.1 CDS Dret_0312 NC_013223.1 386177 387031 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dde:Dde_1251 ferredoxin-NADP(+) reductase subunit alpha; ferredoxin-NADP(+) reductase subunit alpha 386177..387031 Desulfohalobium retbaense DSM 5692 8418116 YP_003197193.1 CDS Dret_0313 NC_013223.1 387024 388445 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 387024..388445 Desulfohalobium retbaense DSM 5692 8418117 YP_003197194.1 CDS Dret_0314 NC_013223.1 388568 389722 D PFAM: PSP1 domain protein; KEGG: dma:DMR_08030 hypothetical protein; PSP1 domain-containing protein 388568..389722 Desulfohalobium retbaense DSM 5692 8418118 YP_003197195.1 CDS Dret_0315 NC_013223.1 389990 391936 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 389990..391936 Desulfohalobium retbaense DSM 5692 8418119 YP_003197196.1 CDS Dret_0316 NC_013223.1 392380 394557 R TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Miro domain protein; Ferrous iron transport B domain protein; KEGG: dvm:DvMF_1015 ferrous iron transport protein B; ferrous iron transport protein B complement(392380..394557) Desulfohalobium retbaense DSM 5692 8418120 YP_003197197.1 CDS Dret_0317 NC_013223.1 394550 394804 R PFAM: FeoA family protein; KEGG: dma:DMR_19560 ferrous iron transport protein A; FeoA family protein complement(394550..394804) Desulfohalobium retbaense DSM 5692 8418121 YP_003197198.1 CDS Dret_0318 NC_013223.1 394797 394982 R hypothetical protein complement(394797..394982) Desulfohalobium retbaense DSM 5692 8418122 YP_003197199.1 CDS Dret_0319 NC_013223.1 395036 395272 R PFAM: FeoA family protein; KEGG: dma:DMR_19550 putative ferrous iron transport protein; FeoA family protein complement(395036..395272) Desulfohalobium retbaense DSM 5692 8418123 YP_003197200.1 CDS Dret_0320 NC_013223.1 395568 398804 D TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide synthetase; RimK domain protein ATP-grasp; MGS domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: dma:DMR_22160 carbamoyl-phosphate synthase large chain; carbamoyl-phosphate synthase large subunit 395568..398804 Desulfohalobium retbaense DSM 5692 8418124 YP_003197201.1 CDS Dret_0321 NC_013223.1 399414 400799 D TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: dma:DMR_22150 amidophosphoribosyltransferase; amidophosphoribosyltransferase 399414..400799 Desulfohalobium retbaense DSM 5692 8418125 YP_003197202.1 CDS Dret_0322 NC_013223.1 400811 401833 D KEGG: dvm:DvMF_2308 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; SMART: CBS domain containing protein; KpsF/GutQ family protein 400811..401833 Desulfohalobium retbaense DSM 5692 8418126 YP_003197203.1 CDS Dret_0323 NC_013223.1 401988 403574 D KEGG: dde:Dde_3122 dolichyl-phosphate-mannose- protein mannosyltransferase family protein; dolichyl-phosphate-mannose-protein mannosyltransferase family protein 401988..403574 Desulfohalobium retbaense DSM 5692 8418127 YP_003197204.1 CDS Dret_0324 NC_013223.1 403985 406393 D TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: dde:Dde_3124 penicillin-binding protein 1A; penicillin-binding protein 403985..406393 Desulfohalobium retbaense DSM 5692 8418128 YP_003197205.1 CDS Dret_0325 NC_013223.1 406390 407367 D PFAM: nucleoside recognition domain protein; KEGG: sfu:Sfum_3415 nucleoside recognition domain protein; nucleoside recognition domain-containing protein 406390..407367 Desulfohalobium retbaense DSM 5692 8418129 YP_003197206.1 CDS Dret_0326 NC_013223.1 407494 407847 R PFAM: macrophage migration inhibitory factor family protein; KEGG: mca:MCA2795 phenylpyruvate tautomerase, putative; macrophage migration inhibitory factor family protein complement(407494..407847) Desulfohalobium retbaense DSM 5692 8418130 YP_003197207.1 CDS Dret_0327 NC_013223.1 408030 410000 R PFAM: peptidase U32; KEGG: dvl:Dvul_0074 peptidase U32; peptidase U32 complement(408030..410000) Desulfohalobium retbaense DSM 5692 8418131 YP_003197208.1 CDS Dret_0328 NC_013223.1 410325 410792 D PFAM: thioesterase superfamily protein; KEGG: sfu:Sfum_3091 uncharacterized domain 1; thioesterase superfamily protein 410325..410792 Desulfohalobium retbaense DSM 5692 8418132 YP_003197209.1 CDS Dret_0329 NC_013223.1 410939 412069 D catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase 410939..412069 Desulfohalobium retbaense DSM 5692 8418133 YP_003197210.1 CDS Dret_0330 NC_013223.1 412467 414062 D KEGG: cvi:CV_0964 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 412467..414062 Desulfohalobium retbaense DSM 5692 8418134 YP_003197211.1 CDS Dret_0331 NC_013223.1 414405 416594 D catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 414405..416594 Desulfohalobium retbaense DSM 5692 8418135 YP_003197212.1 CDS Dret_0332 NC_013223.1 416812 417234 D PFAM: protein of unknown function DUF101; KEGG: mca:MCA0196 hypothetical protein; hypothetical protein 416812..417234 Desulfohalobium retbaense DSM 5692 8418136 YP_003197213.1 CDS Dret_0333 NC_013223.1 417251 418681 D PFAM: protein of unknown function UPF0027; KEGG: tgr:Tgr7_1950 protein of unknown function UPF0027; hypothetical protein 417251..418681 Desulfohalobium retbaense DSM 5692 8418137 YP_003197214.1 CDS Dret_0334 NC_013223.1 418989 419549 D KEGG: bba:Bd3498 hypothetical protein; hypothetical protein 418989..419549 Desulfohalobium retbaense DSM 5692 8418138 YP_003197215.1 CDS Dret_0335 NC_013223.1 419811 420101 D KEGG: dvm:DvMF_2059 hypothetical protein; hypothetical protein 419811..420101 Desulfohalobium retbaense DSM 5692 8418139 YP_003197216.1 CDS Dret_0336 NC_013223.1 420126 420269 D PFAM: Entericidin EcnAB; entericidin EcnAB 420126..420269 Desulfohalobium retbaense DSM 5692 8418140 YP_003197217.1 CDS Dret_0337 NC_013223.1 420372 420509 D KEGG: tgr:Tgr7_1149 hypothetical protein; hypothetical protein 420372..420509 Desulfohalobium retbaense DSM 5692 8418141 YP_003197218.1 CDS Dret_0338 NC_013223.1 420623 421369 R PFAM: protein of unknown function DUF364; KEGG: sfu:Sfum_0019 conserved hypothetical cytosolic protein; hypothetical protein complement(420623..421369) Desulfohalobium retbaense DSM 5692 8418142 YP_003197219.1 CDS Dret_0339 NC_013223.1 421659 422228 D PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: dma:DMR_28800 GAF domain protein; putative phytochrome sensor protein 421659..422228 Desulfohalobium retbaense DSM 5692 8418143 YP_003197220.1 CDS Dret_0340 NC_013223.1 422243 423259 D KEGG: dvm:DvMF_1440 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 422243..423259 Desulfohalobium retbaense DSM 5692 8418144 YP_003197221.1 CDS Dret_0341 NC_013223.1 423782 425008 D PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 423782..425008 Desulfohalobium retbaense DSM 5692 8418146 YP_003197222.1 CDS Dret_0342 NC_013223.1 425126 427225 R PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_0094 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(425126..427225) Desulfohalobium retbaense DSM 5692 8418147 YP_003197223.1 CDS Dret_0343 NC_013223.1 427906 428847 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_0145 putative glycine betaine/L- proline ABC transporter, solute-binding protein; glycine/betaine ABC transporter substrate-binding protein 427906..428847 Desulfohalobium retbaense DSM 5692 8418148 YP_003197224.1 CDS Dret_0344 NC_013223.1 428954 429826 D PFAM: protein of unknown function DUF849; KEGG: bxe:Bxe_B0827 hypothetical protein; hypothetical protein 428954..429826 Desulfohalobium retbaense DSM 5692 8418149 YP_003197225.1 CDS Dret_0345 NC_013223.1 429871 430854 D PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: csa:Csal_3173 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 429871..430854 Desulfohalobium retbaense DSM 5692 8418150 YP_003197226.1 CDS Dret_0346 NC_013223.1 430838 431317 D KEGG: ppg:PputGB1_0325 hypothetical protein; hypothetical protein 430838..431317 Desulfohalobium retbaense DSM 5692 8418151 YP_003197227.1 CDS Dret_0347 NC_013223.1 431346 432314 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: Helix-turn-helix, AraC domain; KEGG: pap:PSPA7_6176 putative transcriptional regulator; AraC family transcriptional regulator complement(431346..432314) Desulfohalobium retbaense DSM 5692 8418152 YP_003197228.1 CDS Dret_0348 NC_013223.1 432648 433547 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: csa:Csal_0039 protein of unknown function DUF6, transmembrane; hypothetical protein 432648..433547 Desulfohalobium retbaense DSM 5692 8418153 YP_003197229.1 CDS Dret_0349 NC_013223.1 433942 436221 R PFAM: MscS Mechanosensitive ion channel; KEGG: csa:Csal_3104 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS complement(433942..436221) Desulfohalobium retbaense DSM 5692 8418154 YP_003197230.1 CDS Dret_0350 NC_013223.1 436506 437267 R PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: dol:Dole_0585 methyltransferase type 11; type 11 methyltransferase complement(436506..437267) Desulfohalobium retbaense DSM 5692 8418155 YP_003197231.1 CDS Dret_0351 NC_013223.1 437518 438366 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: csa:Csal_2886 substrate-binding region of ABC- type glycine betaine transport system; glycine/betaine ABC transporter substrate-binding protein complement(437518..438366) Desulfohalobium retbaense DSM 5692 8418156 YP_003197232.1 CDS Dret_0352 NC_013223.1 438513 439820 R PFAM: Radical SAM domain protein; KEGG: dat:HRM2_30680 hypothetical protein; radical SAM protein complement(438513..439820) Desulfohalobium retbaense DSM 5692 8418157 YP_003197233.1 CDS Dret_0353 NC_013223.1 440172 440741 D hypothetical protein 440172..440741 Desulfohalobium retbaense DSM 5692 8418158 YP_003197234.1 CDS Dret_0354 NC_013223.1 440738 441997 R PFAM: peptidase M24; KEGG: csa:Csal_2884 peptidase M24; peptidase M24 complement(440738..441997) Desulfohalobium retbaense DSM 5692 8418159 YP_003197235.1 CDS Dret_0355 NC_013223.1 442579 443475 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dvl:Dvul_2672 LysR family transcriptional regulator; LysR family transcriptional regulator 442579..443475 Desulfohalobium retbaense DSM 5692 8418160 YP_003197236.1 CDS Dret_0356 NC_013223.1 443798 445909 D PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: sun:SUN_0722 transcription accessory protein; Tex-like protein 443798..445909 Desulfohalobium retbaense DSM 5692 8418161 YP_003197237.1 CDS Dret_0357 NC_013223.1 446020 446910 R PFAM: lipopolysaccharide biosynthesis protein; KEGG: sat:SYN_03766 hypothetical protein; lipopolysaccharide biosynthesis protein complement(446020..446910) Desulfohalobium retbaense DSM 5692 8418162 YP_003197238.1 CDS Dret_0358 NC_013223.1 447158 447475 D PFAM: regulatory protein MarR; KEGG: afr:AFE_0075 hypothetical protein; transcriptional regulator, MarR family 447158..447475 Desulfohalobium retbaense DSM 5692 8418163 YP_003197239.1 CDS Dret_0359 NC_013223.1 447487 447639 D hypothetical protein 447487..447639 Desulfohalobium retbaense DSM 5692 8418164 YP_003197240.1 CDS Dret_0360 NC_013223.1 448343 448939 D KEGG: psa:PST_1470 death-on-curing family protein; death-on-curing family protein 448343..448939 Desulfohalobium retbaense DSM 5692 8418165 YP_003197241.1 CDS Dret_0361 NC_013223.1 449376 450194 D TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: dol:Dole_2032 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 449376..450194 Desulfohalobium retbaense DSM 5692 8418166 YP_003197242.1 CDS Dret_0362 NC_013223.1 450478 450957 D hypothetical protein 450478..450957 Desulfohalobium retbaense DSM 5692 8418167 YP_003197243.1 CDS Dret_0363 NC_013223.1 451046 451249 D KEGG: eba:p1B35 hypothetical protein; hypothetical protein 451046..451249 Desulfohalobium retbaense DSM 5692 8418168 YP_003197244.1 CDS Dret_0364 NC_013223.1 451246 451437 D PFAM: Protein of unknown function DUF2283; KEGG: pna:Pnap_1349 hypothetical protein; hypothetical protein 451246..451437 Desulfohalobium retbaense DSM 5692 8418169 YP_003197245.1 CDS Dret_0365 NC_013223.1 451450 451566 D hypothetical protein 451450..451566 Desulfohalobium retbaense DSM 5692 8418170 YP_003197246.1 CDS Dret_0366 NC_013223.1 451569 452123 D hypothetical protein 451569..452123 Desulfohalobium retbaense DSM 5692 8418171 YP_003197247.1 CDS Dret_0367 NC_013223.1 452185 453645 D KEGG: dal:Dalk_1490 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-6-phosphate isomerase type II; mannose-1-phosphate guanylyltransferase/mannose- 6-phosphate isomerase 452185..453645 Desulfohalobium retbaense DSM 5692 8418172 YP_003197248.1 CDS Dret_0368 NC_013223.1 454038 454580 D hypothetical protein 454038..454580 Desulfohalobium retbaense DSM 5692 8418173 YP_003197249.1 CDS Dret_0369 NC_013223.1 455122 456078 D PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: dma:DMR_38190 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 455122..456078 Desulfohalobium retbaense DSM 5692 8418174 YP_003197250.1 CDS Dret_0371 NC_013223.1 456526 457044 R KEGG: dat:HRM2_19930 hypothetical protein; hypothetical protein complement(456526..457044) Desulfohalobium retbaense DSM 5692 8418176 YP_003197251.1 CDS Dret_0372 NC_013223.1 457124 458524 R KEGG: dat:HRM2_19930 hypothetical protein; hypothetical protein complement(457124..458524) Desulfohalobium retbaense DSM 5692 8418177 YP_003197252.1 CDS Dret_0373 NC_013223.1 458627 459853 R PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(458627..459853) Desulfohalobium retbaense DSM 5692 8418178 YP_003197253.1 CDS Dret_0374 NC_013223.1 459937 460818 R KEGG: dat:HRM2_19930 hypothetical protein; hypothetical protein complement(459937..460818) Desulfohalobium retbaense DSM 5692 8418179 YP_003197254.1 CDS Dret_0375 NC_013223.1 461071 461553 D KEGG: ppr:PBPRA2370 putative transposase; putative transposase 461071..461553 Desulfohalobium retbaense DSM 5692 8418180 YP_003197255.1 CDS Dret_0376 NC_013223.1 461619 462596 D PFAM: Integrase catalytic region; KEGG: ppr:PBPRB1457 transposase; integrase catalytic subunit 461619..462596 Desulfohalobium retbaense DSM 5692 8418181 YP_003197256.1 CDS Dret_0377 NC_013223.1 462978 464114 D PFAM: glycosyl transferase group 1; KEGG: gur:Gura_3776 glycosyl transferase, group 1; group 1 glycosyl transferase 462978..464114 Desulfohalobium retbaense DSM 5692 8418182 YP_003197257.1 CDS Dret_0378 NC_013223.1 464315 465361 D KEGG: gbm:Gbem_1617 hypothetical protein; hypothetical protein 464315..465361 Desulfohalobium retbaense DSM 5692 8418183 YP_003197258.1 CDS Dret_0379 NC_013223.1 465367 466428 D KEGG: sse:Ssed_1264 SecC motif-containing protein; hypothetical protein 465367..466428 Desulfohalobium retbaense DSM 5692 8418184 YP_003197259.1 CDS Dret_0380 NC_013223.1 466478 467653 D PFAM: glycosyl transferase group 1; KEGG: pub:SAR11_0550 glycosyl transferase family protein; group 1 glycosyl transferase 466478..467653 Desulfohalobium retbaense DSM 5692 8418185 YP_003197260.1 CDS Dret_0381 NC_013223.1 467616 468533 D KEGG: sme:SM_b21237 sulfotransferase domain- containing protein; hypothetical protein 467616..468533 Desulfohalobium retbaense DSM 5692 8418186 YP_003197261.1 CDS Dret_0382 NC_013223.1 468530 469933 D PFAM: polysaccharide biosynthesis protein; KEGG: sme:SM_b20950 putative transport protein, Wzx; polysaccharide biosynthesis protein 468530..469933 Desulfohalobium retbaense DSM 5692 8418187 YP_003197262.1 CDS Dret_0383 NC_013223.1 470086 471318 D KEGG: abu:Abu_0686 hypothetical protein; hypothetical protein 470086..471318 Desulfohalobium retbaense DSM 5692 8418188 YP_003197263.1 CDS Dret_0384 NC_013223.1 471336 472514 D PFAM: glycosyl transferase group 1; KEGG: geo:Geob_2133 glycosyl transferase group 1; group 1 glycosyl transferase 471336..472514 Desulfohalobium retbaense DSM 5692 8418189 YP_003197264.1 CDS Dret_0386 NC_013223.1 473305 474609 D KEGG: scl:sce7845 hypothetical protein; hypothetical protein 473305..474609 Desulfohalobium retbaense DSM 5692 8418191 YP_003197265.1 CDS Dret_0387 NC_013223.1 474599 475999 D KEGG: vha:VIBHAR_00696 hypothetical protein; Coenzyme F390 synthetase-like protein 474599..475999 Desulfohalobium retbaense DSM 5692 8418192 YP_003197266.1 CDS Dret_0388 NC_013223.1 475996 478161 D PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Alcohol dehydrogenase zinc- binding domain protein; KEGG: vvy:VV0357 putatve zinc-binding dehydrogenase; oxidoreductase domain-containing protein 475996..478161 Desulfohalobium retbaense DSM 5692 8418193 YP_003197267.1 CDS Dret_0389 NC_013223.1 478219 478605 D hypothetical protein 478219..478605 Desulfohalobium retbaense DSM 5692 8418194 YP_003197268.1 CDS Dret_0390 NC_013223.1 478589 478996 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: tau:Tola_2854 transcriptional regulator, XRE family; XRE family transcriptional regulator 478589..478996 Desulfohalobium retbaense DSM 5692 8418195 YP_003197269.1 CDS Dret_0391 NC_013223.1 478968 479405 D KEGG: aeh:Mlg_2308 hypothetical protein; hypothetical protein 478968..479405 Desulfohalobium retbaense DSM 5692 8418196 YP_003197270.1 CDS Dret_0392 NC_013223.1 479407 481080 D PFAM: Heparinase II/III family protein; KEGG: dal:Dalk_1335 heparinase II/III family protein; heparinase II/III family protein 479407..481080 Desulfohalobium retbaense DSM 5692 8418197 YP_003197271.1 CDS Dret_0393 NC_013223.1 481077 482288 D PFAM: glycosyl transferase group 1; KEGG: dal:Dalk_1334 glycosyl transferase group 1; group 1 glycosyl transferase 481077..482288 Desulfohalobium retbaense DSM 5692 8418198 YP_003197272.1 CDS Dret_0395 NC_013223.1 482863 484083 D KEGG: dal:Dalk_1333 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 482863..484083 Desulfohalobium retbaense DSM 5692 8418200 YP_003197273.1 CDS Dret_0397 NC_013223.1 484885 485799 D PFAM: protein of unknown function DUF1568; KEGG: vei:Veis_2394 hypothetical protein; hypothetical protein 484885..485799 Desulfohalobium retbaense DSM 5692 8418202 YP_003197274.1 CDS Dret_0398 NC_013223.1 486104 487504 R KEGG: dat:HRM2_19930 hypothetical protein; hypothetical protein complement(486104..487504) Desulfohalobium retbaense DSM 5692 8418203 YP_003197275.1 CDS Dret_0399 NC_013223.1 487489 488136 R PFAM: GCN5-related N-acetyltransferase; KEGG: tgr:Tgr7_2078 GCN5-related N- acetyltransferase; N-acetyltransferase GCN5 complement(487489..488136) Desulfohalobium retbaense DSM 5692 8418204 YP_003197276.1 CDS Dret_0400 NC_013223.1 488133 488429 R PFAM: Protein of unknown function DUF1778; KEGG: hch:HCH_05628 hypothetical protein; hypothetical protein complement(488133..488429) Desulfohalobium retbaense DSM 5692 8418205 YP_003197277.1 CDS Dret_0401 NC_013223.1 489047 490522 R PFAM: Glycosyl transferase, family 4, conserved region; KEGG: dma:DMR_04940 putative glycosyltransferase; glycosyl transferase family protein complement(489047..490522) Desulfohalobium retbaense DSM 5692 8418206 YP_003197278.1 CDS Dret_0402 NC_013223.1 491026 492666 D PFAM: ferredoxin-dependent glutamate synthase; KEGG: sat:SYN_02385 glutamate synthase [NADPH] small chain; ferredoxin-dependent glutamate synthase 491026..492666 Desulfohalobium retbaense DSM 5692 8418207 YP_003197279.1 CDS Dret_0403 NC_013223.1 493422 493877 R PFAM: nuclease (SNase domain protein); KEGG: dma:DMR_41750 putative nuclease; nuclease (SNase domain-containing protein) complement(493422..493877) Desulfohalobium retbaense DSM 5692 8418208 YP_003197280.1 CDS Dret_0404 NC_013223.1 493864 495237 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: gbm:Gbem_3948 MATE efflux family protein; MATE efflux family protein complement(493864..495237) Desulfohalobium retbaense DSM 5692 8418209 YP_003197281.1 CDS Dret_0405 NC_013223.1 496274 496783 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: HNH endonuclease domain-containing protein; HNH endonuclease 496274..496783 Desulfohalobium retbaense DSM 5692 8418210 YP_003197282.1 CDS Dret_0406 NC_013223.1 497014 497163 R hypothetical protein complement(497014..497163) Desulfohalobium retbaense DSM 5692 8418211 YP_003197283.1 CDS Dret_0407 NC_013223.1 497415 498266 R KEGG: dvm:DvMF_1219 transposase, putative; transposase complement(497415..498266) Desulfohalobium retbaense DSM 5692 8418212 YP_003197284.1 CDS Dret_0409 NC_013223.1 499819 501834 D KEGG: dvl:Dvul_2370 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; MEKHLA domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein; PAS/PAC sensor signal transduction histidine kinase 499819..501834 Desulfohalobium retbaense DSM 5692 8418214 YP_003197285.1 CDS Dret_0410 NC_013223.1 501831 502547 D PFAM: response regulator receiver; Sulfate transporter/antisigma-factor antagonist STAS; SMART: response regulator receiver; KEGG: dde:Dde_0710 response regulator receiver domain-containing protein; anti-sigma-factor antagonist 501831..502547 Desulfohalobium retbaense DSM 5692 8418215 YP_003197286.1 CDS Dret_0411 NC_013223.1 502890 504239 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 502890..504239 Desulfohalobium retbaense DSM 5692 8418216 YP_003197287.1 CDS Dret_0412 NC_013223.1 504236 505015 D PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_2110 glycosyl transferase family protein; family 2 glycosyl transferase 504236..505015 Desulfohalobium retbaense DSM 5692 8418217 YP_003197288.1 CDS Dret_0413 NC_013223.1 505277 505678 R PFAM: cytochrome c class III; KEGG: dma:DMR_02560 cytochrome c3; cytochrome c class III complement(505277..505678) Desulfohalobium retbaense DSM 5692 8418218 YP_003197289.1 CDS Dret_0414 NC_013223.1 505923 507278 R Contains selenocysteine; PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dvl:Dvul_0771 oxidoreductase, selenocysteine- containing; hypothetical protein complement(505923..507278) Desulfohalobium retbaense DSM 5692 8418219 YP_003197290.1 CDS Dret_0415 NC_013223.1 507481 508371 R PFAM: UspA domain protein; KEGG: dol:Dole_2256 UspA domain-containing protein; UspA domain-containing protein complement(507481..508371) Desulfohalobium retbaense DSM 5692 8418220 YP_003197291.1 CDS Dret_0416 NC_013223.1 508826 509734 R PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dat:HRM2_22770 HdrD2'; hypothetical protein complement(508826..509734) Desulfohalobium retbaense DSM 5692 8418221 YP_003197292.1 CDS Dret_0417 NC_013223.1 509701 510285 R KEGG: sfu:Sfum_0820 putative heterodisulfide reductase, C subunit; putative heterodisulfide reductase, C subunit complement(509701..510285) Desulfohalobium retbaense DSM 5692 8418222 YP_003197293.1 CDS Dret_0418 NC_013223.1 510374 513802 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; response regulator receiver; KEGG: sfu:Sfum_0821 response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase; response regulator receiver protein complement(510374..513802) Desulfohalobium retbaense DSM 5692 8418223 YP_003197294.1 CDS Dret_0419 NC_013223.1 513846 514994 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_0822 formate dehydrogenase; Formate dehydrogenase complement(513846..514994) Desulfohalobium retbaense DSM 5692 8418224 YP_003197295.1 CDS Dret_0420 NC_013223.1 515057 515476 R PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: sfu:Sfum_0823 methyl-viologen-reducing hydrogenase, delta subunit; methyl-viologen-reducing hydrogenase delta subunit complement(515057..515476) Desulfohalobium retbaense DSM 5692 8418225 YP_003197296.1 CDS Dret_0421 NC_013223.1 515501 517525 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; KEGG: dde:Dde_1209 heterodisulfide reductase, A subunit; 4Fe-4S ferredoxin complement(515501..517525) Desulfohalobium retbaense DSM 5692 8418226 YP_003197297.1 CDS Dret_0422 NC_013223.1 517549 518616 R PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: dol:Dole_1150 coenzyme F420 hydrogenase/dehydrogenase beta subunit; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain-containing protein complement(517549..518616) Desulfohalobium retbaense DSM 5692 8418227 YP_003197298.1 CDS Dret_0423 NC_013223.1 519291 520787 D KEGG: sfu:Sfum_2401 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 519291..520787 Desulfohalobium retbaense DSM 5692 8418228 YP_003197299.1 CDS Dret_0424 NC_013223.1 520956 522377 D PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dal:Dalk_0736 putative two component, sigma54 specific, transcriptional regulator, Fis family; putative two component, sigma54 specific, transcriptional regulator, Fis family 520956..522377 Desulfohalobium retbaense DSM 5692 8418229 YP_003197300.1 CDS Dret_0425 NC_013223.1 522702 523301 R PFAM: regulatory protein TetR; KEGG: dde:Dde_2002 TetR family transcriptional regulator; TetR family transcriptional regulator complement(522702..523301) Desulfohalobium retbaense DSM 5692 8418230 YP_003197301.1 CDS Dret_0426 NC_013223.1 523786 525432 D KEGG: dde:Dde_2091 NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthetase 523786..525432 Desulfohalobium retbaense DSM 5692 8418231 YP_003197302.1 CDS Dret_0427 NC_013223.1 525856 527238 R PFAM: glycosyl transferase group 1; KEGG: pca:Pcar_3111 trehalose phosphorylase/synthase; group 1 glycosyl transferase complement(525856..527238) Desulfohalobium retbaense DSM 5692 8418232 YP_003197303.1 CDS Dret_0428 NC_013223.1 528086 528316 D hypothetical protein 528086..528316 Desulfohalobium retbaense DSM 5692 8418233 YP_003197304.1 CDS Dret_0429 NC_013223.1 528460 528759 D PFAM: protein of unknown function DUF77; KEGG: dvl:Dvul_1840 hypothetical protein; hypothetical protein 528460..528759 Desulfohalobium retbaense DSM 5692 8418234 YP_003197305.1 CDS Dret_0430 NC_013223.1 528748 529905 R PFAM: major facilitator superfamily MFS_1; KEGG: dat:HRM2_32890 putative permease of the major facilitator superfamily; major facilitator superfamily protein complement(528748..529905) Desulfohalobium retbaense DSM 5692 8418235 YP_003197306.1 CDS Dret_0431 NC_013223.1 530205 530759 D KEGG: dvl:Dvul_0805 hypothetical protein; hypothetical protein 530205..530759 Desulfohalobium retbaense DSM 5692 8418236 YP_003197307.1 CDS Dret_0432 NC_013223.1 530903 535249 R PFAM: protein of unknown function DUF490; KEGG: dma:DMR_35520 hypothetical protein; hypothetical protein complement(530903..535249) Desulfohalobium retbaense DSM 5692 8418237 YP_003197308.1 CDS Dret_0433 NC_013223.1 535472 537259 R PFAM: surface antigen (D15); KEGG: dma:DMR_35510 hypothetical protein; surface antigen (D15) complement(535472..537259) Desulfohalobium retbaense DSM 5692 8418238 YP_003197309.1 CDS Dret_0434 NC_013223.1 537388 537819 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dvm:DvMF_1013 peptidylprolyl isomerase FKBP- type; FKBP-type peptidylprolyl isomerase 537388..537819 Desulfohalobium retbaense DSM 5692 8418239 YP_003197310.1 CDS Dret_0435 NC_013223.1 537831 538490 D PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dma:DMR_43230 haloacid dehalogenase-like hydrolase family protein; haloacid dehalogenase domain-containing protein hydrolase 537831..538490 Desulfohalobium retbaense DSM 5692 8418240 YP_003197311.1 CDS Dret_0436 NC_013223.1 538548 538913 R KEGG: dvm:DvMF_3059 hypothetical protein; hypothetical protein complement(538548..538913) Desulfohalobium retbaense DSM 5692 8418241 YP_003197312.1 CDS Dret_0437 NC_013223.1 538916 540895 R KEGG: ppd:Ppro_2997 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; CHASE4 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(538916..540895) Desulfohalobium retbaense DSM 5692 8418242 YP_003197313.1 CDS Dret_0438 NC_013223.1 541070 541603 D PFAM: Asparaginase/glutaminase; KEGG: ank:AnaeK_1739 asparaginase; asparaginase/glutaminase 541070..541603 Desulfohalobium retbaense DSM 5692 8418243 YP_003197314.1 CDS Dret_0439 NC_013223.1 541603 542763 D PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: dvu:DVU0477 isocitrate dehydrogenase, NADP- dependent; Isocitrate dehydrogenase (NADP(+)) 541603..542763 Desulfohalobium retbaense DSM 5692 8418244 YP_003197315.1 CDS Dret_0440 NC_013223.1 542933 544183 R PFAM: ATPase-like, ParA/MinD; Dinitrogenase iron- molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_3202 hypothetical protein; ParA/MinD-like ATPase complement(542933..544183) Desulfohalobium retbaense DSM 5692 8418245 YP_003197316.1 CDS Dret_0441 NC_013223.1 544199 545056 R PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3201 iron-sulfur cluster- binding/ATPase domain-containing protein; Cobyrinic acid ac-diamide synthase complement(544199..545056) Desulfohalobium retbaense DSM 5692 8418246 YP_003197317.1 CDS Dret_0442 NC_013223.1 545053 545925 R PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_1127 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase complement(545053..545925) Desulfohalobium retbaense DSM 5692 8418247 YP_003197318.1 CDS Dret_0443 NC_013223.1 546109 546612 D hypothetical protein 546109..546612 Desulfohalobium retbaense DSM 5692 8418248 YP_003197319.1 CDS Dret_0444 NC_013223.1 546573 546890 R KEGG: dal:Dalk_2261 putative cytoplasmic protein; putative cytoplasmic protein complement(546573..546890) Desulfohalobium retbaense DSM 5692 8418249 YP_003197320.1 CDS Dret_0445 NC_013223.1 546994 547353 R PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_3198 hypothetical protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein complement(546994..547353) Desulfohalobium retbaense DSM 5692 8418250 YP_003197321.1 CDS Dret_0446 NC_013223.1 547374 547751 R KEGG: dde:Dde_3197 hypothetical protein; hypothetical protein complement(547374..547751) Desulfohalobium retbaense DSM 5692 8418251 YP_003197322.1 CDS Dret_0447 NC_013223.1 547927 549243 R KEGG: dde:Dde_3196 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; PAS fold-4 domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; PAS domain containing protein; putative sigma-54 specific transcriptional regulator complement(547927..549243) Desulfohalobium retbaense DSM 5692 8418252 YP_003197323.1 CDS Dret_0448 NC_013223.1 549478 550140 R TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: dvm:DvMF_3165 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB complement(549478..550140) Desulfohalobium retbaense DSM 5692 8418253 YP_003197324.1 CDS Dret_0449 NC_013223.1 550141 550494 R PFAM: hydrogenase expression/synthesis HypA; KEGG: dde:Dde_1308 hydrogenase nickel insertion protein HypA, putative; hydrogenase nickel incorporation protein HypA complement(550141..550494) Desulfohalobium retbaense DSM 5692 8418254 YP_003197325.1 CDS Dret_0450 NC_013223.1 551048 551506 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dvm:DvMF_0834 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 551048..551506 Desulfohalobium retbaense DSM 5692 8418256 YP_003197326.1 CDS eno NC_013223.1 551605 552903 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(551605..552903) Desulfohalobium retbaense DSM 5692 8418257 YP_003197327.1 CDS Dret_0452 NC_013223.1 553040 553867 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(553040..553867) Desulfohalobium retbaense DSM 5692 8418258 YP_003197328.1 CDS Dret_0453 NC_013223.1 554263 555336 D KEGG: glo:Glov_1763 hypothetical protein; hypothetical protein 554263..555336 Desulfohalobium retbaense DSM 5692 8418259 YP_003197329.1 CDS Dret_0454 NC_013223.1 555340 558033 D KEGG: dma:DMR_35740 cytochrome c family protein; cytochrome c family protein 555340..558033 Desulfohalobium retbaense DSM 5692 8418260 YP_003197330.1 CDS Dret_0455 NC_013223.1 558216 559391 R KEGG: dma:DMR_18120 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase complement(558216..559391) Desulfohalobium retbaense DSM 5692 8418261 YP_003197331.1 CDS Dret_0456 NC_013223.1 559401 559958 R PFAM: protein of unknown function DUF208; KEGG: dvm:DvMF_2375 protein of unknown function DUF208; hypothetical protein complement(559401..559958) Desulfohalobium retbaense DSM 5692 8418262 YP_003197332.1 CDS Dret_0457 NC_013223.1 559945 561414 R KEGG: dma:DMR_17030 ribonuclease E and G family protein; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; ribonuclease, Rne/Rng family complement(559945..561414) Desulfohalobium retbaense DSM 5692 8418263 YP_003197333.1 CDS Dret_0458 NC_013223.1 561429 562427 R PFAM: Radical SAM domain protein; KEGG: dde:Dde_0538 radical SAM domain-containing protein; radical SAM protein complement(561429..562427) Desulfohalobium retbaense DSM 5692 8418264 YP_003197334.1 CDS Dret_0459 NC_013223.1 562457 563290 D PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: dma:DMR_17010 putative methyltransferase; tRNA (adenine-N(1)-)-methyltransferase 562457..563290 Desulfohalobium retbaense DSM 5692 8418265 YP_003197335.1 CDS Dret_0460 NC_013223.1 564090 565355 D KEGG: dde:Dde_0540 phenylacetate-coenzyme A ligase, putative; phenylacetate-coenzyme A ligase 564090..565355 Desulfohalobium retbaense DSM 5692 8418266 YP_003197336.1 CDS Dret_0461 NC_013223.1 565346 566524 D PFAM: protein of unknown function DUF399; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: dde:Dde_0541 PDZ/DHR/GLGF; hypothetical protein 565346..566524 Desulfohalobium retbaense DSM 5692 8418267 YP_003197337.1 CDS Dret_0462 NC_013223.1 566840 567379 D PFAM: AMMECR1 domain protein; KEGG: dma:DMR_28890 hypothetical protein; AMMECR1 domain-containing protein 566840..567379 Desulfohalobium retbaense DSM 5692 8418268 YP_003197338.1 CDS Dret_0463 NC_013223.1 567533 568303 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dma:DMR_35690 putative RNA methyltransferase; tRNA/rRNA methyltransferase SpoU complement(567533..568303) Desulfohalobium retbaense DSM 5692 8418269 YP_003197339.1 CDS Dret_0464 NC_013223.1 568618 569631 D KEGG: csa:Csal_1476 periplasmic phosphate binding protein; phosphate binding protein 568618..569631 Desulfohalobium retbaense DSM 5692 8418270 YP_003197340.1 CDS Dret_0465 NC_013223.1 569908 571140 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_2566 phosphate ABC transporter, inner membrane subunit PstC; phosphate ABC transporter permease 569908..571140 Desulfohalobium retbaense DSM 5692 8418271 YP_003197341.1 CDS Dret_0466 NC_013223.1 571165 572337 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_1478 phosphate transport system permease protein 2; phosphate ABC transporter permease 571165..572337 Desulfohalobium retbaense DSM 5692 8418272 YP_003197342.1 CDS Dret_0467 NC_013223.1 572368 573060 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sfu:Sfum_0707 two component transcriptional regulator, winged helix family; two component transcriptional regulator, winged helix family 572368..573060 Desulfohalobium retbaense DSM 5692 8418273 YP_003197343.1 CDS Dret_0468 NC_013223.1 573064 574854 D KEGG: sfu:Sfum_2891 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS/PAC sensor signal transduction histidine kinase 573064..574854 Desulfohalobium retbaense DSM 5692 8418274 YP_003197344.1 CDS Dret_0469 NC_013223.1 574984 575748 D KEGG: dvl:Dvul_1910 phosphate ABC transporter, ATPase subunit; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; phosphate ABC transporter ATPase 574984..575748 Desulfohalobium retbaense DSM 5692 8418275 YP_003197345.1 CDS Dret_0470 NC_013223.1 575796 576464 D TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: sfu:Sfum_0700 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU 575796..576464 Desulfohalobium retbaense DSM 5692 8418276 YP_003197346.1 CDS Dret_0471 NC_013223.1 576721 578169 D KEGG: sat:SYN_01534 Mg/Co/Ni transporter; TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE intracellular region; MgtE integral membrane region; SMART: CBS domain containing protein; magnesium transporter 576721..578169 Desulfohalobium retbaense DSM 5692 8418277 YP_003197347.1 CDS Dret_0472 NC_013223.1 578307 578408 D hypothetical protein 578307..578408 Desulfohalobium retbaense DSM 5692 8418278 YP_003197348.1 CDS Dret_0473 NC_013223.1 578608 579138 R KEGG: dma:DMR_33410 hypothetical protein; hypothetical protein complement(578608..579138) Desulfohalobium retbaense DSM 5692 8418279 YP_003197349.1 CDS Dret_0474 NC_013223.1 579280 579939 D KEGG: ppd:Ppro_2838 protein-L-isoaspartate O- methyltransferase; TIGRFAM: protein-L-isoaspartate O- methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase; protein-L-isoaspartate O-methyltransferase 579280..579939 Desulfohalobium retbaense DSM 5692 8418280 YP_003197350.1 CDS Dret_0475 NC_013223.1 580265 581074 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3071 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane subunit 580265..581074 Desulfohalobium retbaense DSM 5692 8418281 YP_003197351.1 CDS Dret_0476 NC_013223.1 581172 581951 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP0989 amino acid permease, ATP-binding protein; ABC transporter 581172..581951 Desulfohalobium retbaense DSM 5692 8418282 YP_003197352.1 CDS Dret_0477 NC_013223.1 582092 582928 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dde:Dde_3070 extracellular solute-binding protein; family 3 extracellular solute-binding protein 582092..582928 Desulfohalobium retbaense DSM 5692 8418283 YP_003197353.1 CDS Dret_0478 NC_013223.1 583182 584063 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_2684 binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 583182..584063 Desulfohalobium retbaense DSM 5692 8418284 YP_003197354.1 CDS Dret_0479 NC_013223.1 584261 584812 D PFAM: amino acid-binding ACT domain protein; KEGG: sfu:Sfum_2949 amino acid-binding ACT domain protein; ACT domain-containing protein 584261..584812 Desulfohalobium retbaense DSM 5692 8418285 YP_003197355.1 CDS Dret_0480 NC_013223.1 584901 586274 D PFAM: protein of unknown function DUF711; KEGG: dde:Dde_3704 hypothetical protein; hypothetical protein 584901..586274 Desulfohalobium retbaense DSM 5692 8418286 YP_003197356.1 CDS Dret_0481 NC_013223.1 586388 586840 R PFAM: heat shock protein Hsp20; KEGG: dma:DMR_15920 heat shock protein HSP20 family protein; heat shock protein Hsp20 complement(586388..586840) Desulfohalobium retbaense DSM 5692 8418287 YP_003197357.1 CDS Dret_0482 NC_013223.1 586982 588232 R PFAM: amidohydrolase; KEGG: sfu:Sfum_2961 amidohydrolase; amidohydrolase complement(586982..588232) Desulfohalobium retbaense DSM 5692 8418288 YP_003197358.1 CDS Dret_0483 NC_013223.1 588318 589343 R PFAM: dihydrouridine synthase DuS; KEGG: dat:HRM2_10910 dihydrouridine synthase family protein; dihydrouridine synthase DuS complement(588318..589343) Desulfohalobium retbaense DSM 5692 8418289 YP_003197359.1 CDS Dret_0484 NC_013223.1 589349 589822 R PFAM: ribonuclease H; KEGG: dvl:Dvul_2274 ribonuclease H; ribonuclease H complement(589349..589822) Desulfohalobium retbaense DSM 5692 8418290 YP_003197360.1 CDS Dret_0485 NC_013223.1 589822 591222 R PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: dma:DMR_27100 phosphohexose mutase; phosphomannomutase complement(589822..591222) Desulfohalobium retbaense DSM 5692 8418291 YP_003197361.1 CDS Dret_0486 NC_013223.1 591569 592654 D KEGG: dde:Dde_2946 HflK protein; TIGRFAM: HflK protein; PFAM: band 7 protein; SMART: band 7 protein; HflK protein 591569..592654 Desulfohalobium retbaense DSM 5692 8418292 YP_003197362.1 CDS Dret_0487 NC_013223.1 592657 593508 D KEGG: dde:Dde_2947 HflC protein; TIGRFAM: HflC protein; PFAM: band 7 protein; SMART: band 7 protein; HflC protein 592657..593508 Desulfohalobium retbaense DSM 5692 8418293 YP_003197363.1 CDS Dret_0488 NC_013223.1 593622 594767 R KEGG: dvm:DvMF_0138 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase complement(593622..594767) Desulfohalobium retbaense DSM 5692 8418294 YP_003197364.1 CDS Dret_0489 NC_013223.1 594863 597091 R KEGG: dde:Dde_3167 polynucleotide phosphorylase/polyadenylase; TIGRFAM: polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; Polynucleotide phosphorylase, phosphorolytic RNA- binding, bacterial/organelle-type; KH type 2 domain protein; Exoribonuclease, phosphorolytic domain 2; K Homology, type 1, subgroup; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase complement(594863..597091) Desulfohalobium retbaense DSM 5692 8418295 YP_003197365.1 CDS Dret_0490 NC_013223.1 597187 597456 R TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: dal:Dalk_4742 ribosomal protein S15; 30S ribosomal protein S15 complement(597187..597456) Desulfohalobium retbaense DSM 5692 8418296 YP_003197366.1 CDS Dret_0491 NC_013223.1 597468 598439 R TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: dma:DMR_31630 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B complement(597468..598439) Desulfohalobium retbaense DSM 5692 8418297 YP_003197367.1 CDS Dret_0492 NC_013223.1 598432 599424 R PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_3164 DHH family protein; phosphoesterase RecJ domain-containing protein complement(598432..599424) Desulfohalobium retbaense DSM 5692 8418298 YP_003197368.1 CDS Dret_0493 NC_013223.1 599378 599740 R TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: tbd:Tbd_0696 ribosome-binding factor A; ribosome-binding factor A complement(599378..599740) Desulfohalobium retbaense DSM 5692 8418299 YP_003197369.1 CDS Dret_0494 NC_013223.1 599744 600031 R PFAM: protein of unknown function DUF503; KEGG: dvl:Dvul_2434 hypothetical protein; hypothetical protein complement(599744..600031) Desulfohalobium retbaense DSM 5692 8418300 YP_003197370.1 CDS Dret_0495 NC_013223.1 600104 602782 R TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; Miro domain protein; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; KEGG: dma:DMR_31600 translation initiation factor IF-2; translation initiation factor IF-2 complement(600104..602782) Desulfohalobium retbaense DSM 5692 8418301 YP_003197371.1 CDS Dret_0496 NC_013223.1 602772 603032 R PFAM: protein of unknown function DUF448; KEGG: dvu:DVU0509 hypothetical protein; hypothetical protein complement(602772..603032) Desulfohalobium retbaense DSM 5692 8418302 YP_003197372.1 CDS nusA NC_013223.1 603188 604510 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(603188..604510) Desulfohalobium retbaense DSM 5692 8418303 YP_003197373.1 CDS Dret_0498 NC_013223.1 604606 605079 R PFAM: protein of unknown function DUF150; KEGG: dde:Dde_3160 hypothetical protein; hypothetical protein complement(604606..605079) Desulfohalobium retbaense DSM 5692 8418304 YP_003197374.1 CDS Dret_0499 NC_013223.1 605491 606330 D PFAM: ATP-NAD/AcoX kinase; KEGG: dvm:DvMF_0581 ATP-NAD/AcoX kinase; NAD(+) kinase 605491..606330 Desulfohalobium retbaense DSM 5692 8418306 YP_003197375.1 CDS Dret_0500 NC_013223.1 606447 608207 D KEGG: dde:Dde_2617 hypothetical protein; hypothetical protein 606447..608207 Desulfohalobium retbaense DSM 5692 8418307 YP_003197376.1 CDS Dret_0501 NC_013223.1 608218 609456 D PFAM: MltA domain protein; 3D domain protein; KEGG: dde:Dde_2733 transglycosylase, putative; MltA domain-containing protein 608218..609456 Desulfohalobium retbaense DSM 5692 8418308 YP_003197377.1 CDS Dret_0502 NC_013223.1 609460 610893 D TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; Asn/Gln amidotransferase; GatB central domain protein; KEGG: dma:DMR_31400 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; glutamyl-tRNA(Gln) amidotransferase subunit B 609460..610893 Desulfohalobium retbaense DSM 5692 8418309 YP_003197378.1 CDS Dret_0503 NC_013223.1 611017 612069 D KEGG: dvl:Dvul_2877 eIF-2B alpha/beta/delta-related uncharacterized proteins; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; translation initiation factor, aIF-2BI family 611017..612069 Desulfohalobium retbaense DSM 5692 8418310 YP_003197379.1 CDS engA NC_013223.1 612092 613417 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 612092..613417 Desulfohalobium retbaense DSM 5692 8418311 YP_003197380.1 CDS Dret_0505 NC_013223.1 613473 614396 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 613473..614396 Desulfohalobium retbaense DSM 5692 8418312 YP_003197381.1 CDS Dret_0506 NC_013223.1 614415 616031 D KEGG: dde:Dde_0066 DNA polymerase III, tau subunit; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 614415..616031 Desulfohalobium retbaense DSM 5692 8418313 YP_003197382.1 CDS Dret_0507 NC_013223.1 616113 616415 D PFAM: conserved hypothetical protein; KEGG: dde:Dde_0067 hypothetical protein; hypothetical protein 616113..616415 Desulfohalobium retbaense DSM 5692 8418314 YP_003197383.1 CDS Dret_0508 NC_013223.1 616417 617028 D TIGRFAM: recombination protein RecR; PFAM: Zinc finger C4-type, RecR; KEGG: dde:Dde_0068 DNA replication and repair protein RecR; recombination protein RecR 616417..617028 Desulfohalobium retbaense DSM 5692 8418315 YP_003197384.1 CDS Dret_0509 NC_013223.1 617036 619222 D KEGG: dma:DMR_25280 helicase RecD/TraA family protein; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase; Helix-hairpin-helix DNA-binding class 1; helicase, RecD/TraA family 617036..619222 Desulfohalobium retbaense DSM 5692 8418316 YP_003197385.1 CDS Dret_0510 NC_013223.1 619487 620833 D TIGRFAM: trigger factor; PFAM: trigger factor domain protein; trigger factor domain; peptidylprolyl isomerase FKBP-type; KEGG: dde:Dde_2222 trigger factor; trigger factor 619487..620833 Desulfohalobium retbaense DSM 5692 8418318 YP_003197386.1 CDS Dret_0511 NC_013223.1 621055 621648 D KEGG: dvl:Dvul_1734 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP 621055..621648 Desulfohalobium retbaense DSM 5692 8418319 YP_003197387.1 CDS Dret_0512 NC_013223.1 621721 622965 D KEGG: dma:DMR_28160 ATP-dependent Clp protease ATP- binding subunit ClpX; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; AAA ATPase central domain protein; Clp ATPase-like; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit ClpX 621721..622965 Desulfohalobium retbaense DSM 5692 8418320 YP_003197388.1 CDS Dret_0513 NC_013223.1 623103 625550 D KEGG: dvm:DvMF_0112 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; AAA ATPase; ATP-dependent protease La 623103..625550 Desulfohalobium retbaense DSM 5692 8418321 YP_003197389.1 CDS Dret_0514 NC_013223.1 625767 626282 D PFAM: Ferritin Dps family protein; KEGG: sfu:Sfum_1965 ferritin, Dps family protein; ferroxidase 625767..626282 Desulfohalobium retbaense DSM 5692 8418322 YP_003197390.1 CDS Dret_0515 NC_013223.1 626390 628111 D PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; KEGG: dvm:DvMF_0184 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 626390..628111 Desulfohalobium retbaense DSM 5692 8418323 YP_003197391.1 CDS Dret_0516 NC_013223.1 628180 629034 D TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dvm:DvMF_0185 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta 628180..629034 Desulfohalobium retbaense DSM 5692 8418324 YP_003197392.1 CDS Dret_0517 NC_013223.1 629063 629623 D PFAM: Redoxin domain protein; KEGG: sat:SYN_00592 hypothetical protein; redoxin domain-containing protein 629063..629623 Desulfohalobium retbaense DSM 5692 8418325 YP_003197393.1 CDS Dret_0518 NC_013223.1 629707 630300 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sfu:Sfum_2548 redoxin domain protein; alkyl hydroperoxide reductase 629707..630300 Desulfohalobium retbaense DSM 5692 8418326 YP_003197394.1 CDS Dret_0519 NC_013223.1 630297 630644 D KEGG: dde:Dde_1794 hypothetical protein; hypothetical protein 630297..630644 Desulfohalobium retbaense DSM 5692 8418327 YP_003197395.1 CDS Dret_0520 NC_013223.1 630822 631328 R KEGG: ppd:Ppro_0185 hypothetical protein; hypothetical protein complement(630822..631328) Desulfohalobium retbaense DSM 5692 8418328 YP_003197396.1 CDS tgt NC_013223.1 631422 632537 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(631422..632537) Desulfohalobium retbaense DSM 5692 8418329 YP_003197397.1 CDS Dret_0522 NC_013223.1 632544 632954 R KEGG: aeh:Mlg_1165 hypothetical protein; hypothetical protein complement(632544..632954) Desulfohalobium retbaense DSM 5692 8418330 YP_003197398.1 CDS purU NC_013223.1 632974 633843 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(632974..633843) Desulfohalobium retbaense DSM 5692 8418331 YP_003197399.1 CDS Dret_0524 NC_013223.1 634002 635711 D PFAM: ABC transporter, ATPase, predicted; KEGG: hha:Hhal_1066 hypothetical protein; ABC transporter ATPase 634002..635711 Desulfohalobium retbaense DSM 5692 8418332 YP_003197400.1 CDS Dret_0525 NC_013223.1 635840 636820 D PFAM: extracellular solute-binding protein family 1; KEGG: dat:HRM2_32560 putative sulfate transport system, substrate-binding protein; molybdate ABC transporter substrate-binding protein 635840..636820 Desulfohalobium retbaense DSM 5692 8418333 YP_003197401.1 CDS Dret_0526 NC_013223.1 636877 637695 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_4086 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 636877..637695 Desulfohalobium retbaense DSM 5692 8418334 YP_003197402.1 CDS Dret_0527 NC_013223.1 637692 638738 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: dat:HRM2_32540 CysA; ABC transporter 637692..638738 Desulfohalobium retbaense DSM 5692 8418335 YP_003197403.1 CDS Dret_0528 NC_013223.1 638939 640222 D TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; KEGG: dol:Dole_0306 electron transport complex, RnfABCDGE type, C subunit; RnfABCDGE type electron transport complex subunit C 638939..640222 Desulfohalobium retbaense DSM 5692 8418336 YP_003197404.1 CDS Dret_0529 NC_013223.1 640219 641166 D TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: pca:Pcar_0262 NADH:ubiquinone oxidoreductase, RnfD subunit-like; RnfABCDGE type electron transport complex subunit D 640219..641166 Desulfohalobium retbaense DSM 5692 8418337 YP_003197405.1 CDS Dret_0530 NC_013223.1 641171 641761 D TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: dde:Dde_0583 electron transport complex, RnfABCDGE type, G subunit; RnfABCDGE type electron transport complex subunit G 641171..641761 Desulfohalobium retbaense DSM 5692 8418338 YP_003197406.1 CDS Dret_0531 NC_013223.1 641781 642392 D PFAM: RnfA-Nqr electron transport subunit; KEGG: dde:Dde_0584 electron transport complex RsxE subunit; RnfA-Nqr electron transport subunit 641781..642392 Desulfohalobium retbaense DSM 5692 8418339 YP_003197407.1 CDS Dret_0532 NC_013223.1 642419 642994 D TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: pha:PSHAa1105 electron transport complex protein RnfA, inner membrane protein; RnfABCDGE type electron transport complex subunit A 642419..642994 Desulfohalobium retbaense DSM 5692 8418340 YP_003197408.1 CDS Dret_0533 NC_013223.1 643005 643865 D TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0517 ferredoxin; RnfABCDGE type electron transport complex subunit B 643005..643865 Desulfohalobium retbaense DSM 5692 8418341 YP_003197409.1 CDS Dret_0534 NC_013223.1 643862 644317 D PFAM: UspA domain protein; KEGG: dal:Dalk_0122 UspA domain protein; UspA domain-containing protein 643862..644317 Desulfohalobium retbaense DSM 5692 8418342 YP_003197410.1 CDS Dret_0535 NC_013223.1 644412 644789 D KEGG: tgr:Tgr7_1086 positive regulator of sigma E, RseC/MucC; sigma E positive regulator RseC/MucC 644412..644789 Desulfohalobium retbaense DSM 5692 8418343 YP_003197411.1 CDS Dret_0536 NC_013223.1 644879 645916 R PFAM: ApbE family lipoprotein; KEGG: dps:DP0776 thiamine biosynthesis lipoprotein (ApbE) [precursor]; ApbE family lipoprotein complement(644879..645916) Desulfohalobium retbaense DSM 5692 8418344 YP_003197412.1 CDS cysS NC_013223.1 646139 647596 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(646139..647596) Desulfohalobium retbaense DSM 5692 8418345 YP_003197413.1 CDS Dret_0538 NC_013223.1 647671 648882 R TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; PFAM: MECDP-synthase; 4-diphosphocytidyl-2C-methyl- D-erythritol synthase; KEGG: dvl:Dvul_1625 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(647671..648882) Desulfohalobium retbaense DSM 5692 8418346 YP_003197414.1 CDS Dret_0539 NC_013223.1 649371 649508 R hypothetical protein complement(649371..649508) Desulfohalobium retbaense DSM 5692 8418348 YP_003197415.1 CDS Dret_0540 NC_013223.1 649495 650232 R PFAM: protein of unknown function DUF164; KEGG: dvm:DvMF_0258 protein of unknown function DUF164; hypothetical protein complement(649495..650232) Desulfohalobium retbaense DSM 5692 8418349 YP_003197416.1 CDS Dret_0541 NC_013223.1 650400 651374 R PFAM: protein of unknown function DUF34; KEGG: dma:DMR_17790 hypothetical protein; hypothetical protein complement(650400..651374) Desulfohalobium retbaense DSM 5692 8418350 YP_003197417.1 CDS Dret_0542 NC_013223.1 651687 652595 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvm:DvMF_0260 thioredoxin-disulfide reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(651687..652595) Desulfohalobium retbaense DSM 5692 8418352 YP_003197418.1 CDS Dret_0543 NC_013223.1 652592 653299 R TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: dde:Dde_1833 hypothetical protein; hypothetical protein complement(652592..653299) Desulfohalobium retbaense DSM 5692 8418353 YP_003197419.1 CDS Dret_0544 NC_013223.1 653495 653962 R PFAM: protein of unknown function DUF163; KEGG: lip:LI0891 hypothetical protein; hypothetical protein complement(653495..653962) Desulfohalobium retbaense DSM 5692 8418354 YP_003197420.1 CDS Dret_0545 NC_013223.1 653959 656049 R TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: dde:Dde_2334 succinyl-CoA synthetase (ADP- forming) alpha subunit / succinyl-CoA synthetase (ADP- forming) beta subunit; succinyl-CoA synthetase, alpha subunit complement(653959..656049) Desulfohalobium retbaense DSM 5692 8418355 YP_003197421.1 CDS Dret_0546 NC_013223.1 656324 656917 D KEGG: dma:DMR_23250 hypothetical protein; hypothetical protein 656324..656917 Desulfohalobium retbaense DSM 5692 8418356 YP_003197422.1 CDS Dret_0547 NC_013223.1 656921 659116 D KEGG: dde:Dde_3000 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 656921..659116 Desulfohalobium retbaense DSM 5692 8418357 YP_003197423.1 CDS Dret_0548 NC_013223.1 659170 660528 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: dde:Dde_3003 two component Fis family transcriptional regulator; two component, sigma54 specific, transcriptional regulator, Fis family 659170..660528 Desulfohalobium retbaense DSM 5692 8418358 YP_003197424.1 CDS Dret_0549 NC_013223.1 660842 661429 R TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dvm:DvMF_3031 intracellular protease, PfpI family; Pfpi family intracellular protease complement(660842..661429) Desulfohalobium retbaense DSM 5692 8418360 YP_003197425.1 CDS Dret_0550 NC_013223.1 661521 662399 R KEGG: dma:DMR_38390 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; acetylglutamate kinase complement(661521..662399) Desulfohalobium retbaense DSM 5692 8418361 YP_003197426.1 CDS Dret_0551 NC_013223.1 662559 663785 D PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 662559..663785 Desulfohalobium retbaense DSM 5692 8418362 YP_003197427.1 CDS Dret_0552 NC_013223.1 663823 664239 R KEGG: dde:Dde_1643 hypothetical protein; hypothetical protein complement(663823..664239) Desulfohalobium retbaense DSM 5692 8418363 YP_003197428.1 CDS Dret_0553 NC_013223.1 664521 664910 D PFAM: thioesterase superfamily protein; KEGG: dma:DMR_06370 thioesterase superfamily domain protein; thioesterase superfamily protein 664521..664910 Desulfohalobium retbaense DSM 5692 8418364 YP_003197429.1 CDS Dret_0554 NC_013223.1 665878 666444 D PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: dvm:DvMF_0484 Appr-1-p processing domain protein; Appr-1-p processing protein 665878..666444 Desulfohalobium retbaense DSM 5692 8418366 YP_003197430.1 CDS Dret_0555 NC_013223.1 666448 666993 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 666448..666993 Desulfohalobium retbaense DSM 5692 8418367 YP_003197431.1 CDS Dret_0556 NC_013223.1 667299 668723 D KEGG: dma:DMR_38380 ATP-dependent hsl protease ATP- binding subunit HslU; TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase; heat shock protein HslVU, ATPase subunit HslU 667299..668723 Desulfohalobium retbaense DSM 5692 8418368 YP_003197432.1 CDS Dret_0557 NC_013223.1 669390 670364 D PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dat:HRM2_46640 TRAP-type C4-dicarboxylate transport system periplasmic component; Extracellular solute-binding protein 669390..670364 Desulfohalobium retbaense DSM 5692 8418369 YP_003197433.1 CDS Dret_0558 NC_013223.1 670367 670846 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dat:HRM2_46650 TRAP-type C4-dicarboxylate transport system, small permease component; tripartite AtP-independent periplasmic transporter subunit DctQ 670367..670846 Desulfohalobium retbaense DSM 5692 8418370 YP_003197434.1 CDS Dret_0559 NC_013223.1 670843 672183 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dat:HRM2_46660 putative TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 670843..672183 Desulfohalobium retbaense DSM 5692 8418371 YP_003197435.1 CDS Dret_0560 NC_013223.1 672265 674238 D PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dma:DMR_28210 hydantoin utilization protein A; 5-oxoprolinase (ATP-hydrolyzing) 672265..674238 Desulfohalobium retbaense DSM 5692 8418372 YP_003197436.1 CDS Dret_0561 NC_013223.1 674405 675979 D PFAM: Hydantoinase B/oxoprolinase; KEGG: dma:DMR_28190 hydantoin utilization protein B; 5-oxoprolinase (ATP-hydrolyzing) 674405..675979 Desulfohalobium retbaense DSM 5692 8418373 YP_003197437.1 CDS Dret_0562 NC_013223.1 676151 677503 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dvl:Dvul_1978 TolC family type I secretion outer membrane protein; TolC family type I secretion outer membrane protein complement(676151..677503) Desulfohalobium retbaense DSM 5692 8418374 YP_003197438.1 CDS Dret_0563 NC_013223.1 677567 682687 R TIGRFAM: type 1 secretion C-terminal target domain; outer membrane adhesin like proteiin; KEGG: cja:CJA_1396 putative hemolysin; type 1 secretion C-terminal target domain-containing protein complement(677567..682687) Desulfohalobium retbaense DSM 5692 8418375 YP_003197439.1 CDS Dret_0564 NC_013223.1 683255 685486 D KEGG: dde:Dde_1418 ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; type I secretion system ATPase 683255..685486 Desulfohalobium retbaense DSM 5692 8418376 YP_003197440.1 CDS Dret_0565 NC_013223.1 685628 686971 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dvl:Dvul_1976 HlyD family type I secretion membrane fusion protein; HlyD family type I secretion membrane fusion protein 685628..686971 Desulfohalobium retbaense DSM 5692 8418377 YP_003197441.1 CDS Dret_0566 NC_013223.1 686994 687719 D PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: dde:Dde_1420 hypothetical protein; transglutaminase 686994..687719 Desulfohalobium retbaense DSM 5692 8418378 YP_003197442.1 CDS Dret_0567 NC_013223.1 687727 689808 D KEGG: dde:Dde_1421 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; metal-dependent phosphohydrolase HD sub domain; PAS fold domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 687727..689808 Desulfohalobium retbaense DSM 5692 8418379 YP_003197443.1 CDS Dret_0568 NC_013223.1 689958 691427 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pca:Pcar_1208 two component signal transduction response regulator; two component, sigma54 specific, transcriptional regulator, Fis family complement(689958..691427) Desulfohalobium retbaense DSM 5692 8418380 YP_003197444.1 CDS Dret_0569 NC_013223.1 692766 694280 D TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: pca:Pcar_1192 flagellar M-ring protein FliF; flagellar M-ring protein FliF 692766..694280 Desulfohalobium retbaense DSM 5692 8418381 YP_003197445.1 CDS Dret_0570 NC_013223.1 694399 695430 D TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: pca:Pcar_1191 flagellar motor switch protein FliG; flagellar motor switch protein FliG 694399..695430 Desulfohalobium retbaense DSM 5692 8418382 YP_003197446.1 CDS Dret_0571 NC_013223.1 695423 696151 D PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: pca:Pcar_1190 flagellar biosynthesis protein; flagellar assembly protein FliH/type III secretion system HrpE 695423..696151 Desulfohalobium retbaense DSM 5692 8418383 YP_003197447.1 CDS Dret_0572 NC_013223.1 696148 697455 D KEGG: pca:Pcar_1189 flagellum-specific ATP synthase FliI; TIGRFAM: flagellar protein export ATPase FliI; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase; flagellar protein export ATPase FliI 696148..697455 Desulfohalobium retbaense DSM 5692 8418384 YP_003197448.1 CDS Dret_0573 NC_013223.1 697613 698071 D TIGRFAM: flagellar export protein FliJ; KEGG: gbm:Gbem_3834 flagellar export protein FliJ; flagellar export protein FliJ 697613..698071 Desulfohalobium retbaense DSM 5692 8418385 YP_003197449.1 CDS Dret_0574 NC_013223.1 698068 698598 D KEGG: pca:Pcar_1187 hypothetical protein; hypothetical protein 698068..698598 Desulfohalobium retbaense DSM 5692 8418386 YP_003197450.1 CDS Dret_0575 NC_013223.1 698621 700279 D PFAM: flagellar hook-length control protein; KEGG: pca:Pcar_1186 putative flagellar hook-length control protein; flagellar hook-length control protein 698621..700279 Desulfohalobium retbaense DSM 5692 8418387 YP_003197451.1 CDS Dret_0576 NC_013223.1 700295 700978 D PFAM: flagellar hook capping protein; KEGG: pca:Pcar_1185 flagellar hook initiation protein FlgD; flagellar hook capping protein 700295..700978 Desulfohalobium retbaense DSM 5692 8418388 YP_003197452.1 CDS Dret_0577 NC_013223.1 700991 702292 D TIGRFAM: fagellar hook-basal body protein; PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: pca:Pcar_1183 flagellar biosynthesis, hook protein; fagellar hook-basal body protein 700991..702292 Desulfohalobium retbaense DSM 5692 8418389 YP_003197453.1 CDS Dret_0578 NC_013223.1 702670 703455 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: dps:DP2665 flagellar motor apparatus (MotA); MotA/TolQ/ExbB proton channel 702670..703455 Desulfohalobium retbaense DSM 5692 8418390 YP_003197454.1 CDS Dret_0579 NC_013223.1 703470 704216 D PFAM: OmpA/MotB domain protein; KEGG: pca:Pcar_1171 MotB-like flagellar protein; OmpA/MotB domain-containing protein 703470..704216 Desulfohalobium retbaense DSM 5692 8418391 YP_003197455.1 CDS Dret_0580 NC_013223.1 704316 704825 D PFAM: flagellar basal body-associated protein FliL; KEGG: pca:Pcar_1170 flagellar basal body-associated protein; flagellar basal body-associated protein FliL 704316..704825 Desulfohalobium retbaense DSM 5692 8418392 YP_003197456.1 CDS Dret_0581 NC_013223.1 704835 705845 D TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: pca:Pcar_1169 flagellar biosynthesis protein, component of motor switch; flagellar motor switch protein FliM 704835..705845 Desulfohalobium retbaense DSM 5692 8418393 YP_003197457.1 CDS Dret_0582 NC_013223.1 705832 706161 D TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: geo:Geob_0506 flagellar motor switch protein FliN; flagellar motor switch protein FliN 705832..706161 Desulfohalobium retbaense DSM 5692 8418394 YP_003197458.1 CDS Dret_0583 NC_013223.1 706158 706547 D PFAM: flagellar biosynthesis protein FliO; KEGG: pca:Pcar_1167 flagellar biogenesis protein FliO; flagellar biosynthesis protein FliO 706158..706547 Desulfohalobium retbaense DSM 5692 8418395 YP_003197459.1 CDS Dret_0584 NC_013223.1 706544 707302 D TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: pca:Pcar_1166 flagellar biosynthesis protein FliP; flagellar biosynthetic protein FliP 706544..707302 Desulfohalobium retbaense DSM 5692 8418396 YP_003197460.1 CDS Dret_0585 NC_013223.1 707354 707629 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: pca:Pcar_1165 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 707354..707629 Desulfohalobium retbaense DSM 5692 8418397 YP_003197461.1 CDS Dret_0586 NC_013223.1 707734 708516 D TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: pca:Pcar_1164 flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR 707734..708516 Desulfohalobium retbaense DSM 5692 8418398 YP_003197462.1 CDS flhB NC_013223.1 708516 709580 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 708516..709580 Desulfohalobium retbaense DSM 5692 8418399 YP_003197463.1 CDS flhA NC_013223.1 709577 711664 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 709577..711664 Desulfohalobium retbaense DSM 5692 8418400 YP_003197464.1 CDS Dret_0589 NC_013223.1 711654 712967 D KEGG: pca:Pcar_1161 flagellar GTP-binding protein; TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; flagellar biosynthetic protein FlhF 711654..712967 Desulfohalobium retbaense DSM 5692 8418401 YP_003197465.1 CDS Dret_0590 NC_013223.1 712957 713862 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pca:Pcar_1160 putative flagellar biosynthesis protein FlhG; Cobyrinic acid ac-diamide synthase 712957..713862 Desulfohalobium retbaense DSM 5692 8418402 YP_003197466.1 CDS Dret_0591 NC_013223.1 713870 714595 D TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma- 70 region 3 domain protein; KEGG: pca:Pcar_1159 flagellar biosynthesis protein, alternative sigma factor 28; RNA polymerase sigma 28 subunit FliA/WhiG 713870..714595 Desulfohalobium retbaense DSM 5692 8418403 YP_003197467.1 CDS Dret_0592 NC_013223.1 714595 715041 D KEGG: rpe:RPE_1804 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 714595..715041 Desulfohalobium retbaense DSM 5692 8418404 YP_003197468.1 CDS Dret_0593 NC_013223.1 715215 715946 D TIGRFAM: fagellar hook-basal body protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dvm:DvMF_2517 protein of unknown function DUF1078 domain protein; fagellar hook-basal body protein 715215..715946 Desulfohalobium retbaense DSM 5692 8418405 YP_003197469.1 CDS Dret_0594 NC_013223.1 716001 716789 D TIGRFAM: flagellar basal-body rod protein FlgG; fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: pca:Pcar_1156 flagellar basal body rod protein FlgG; flagellar basal-body rod protein FlgG 716001..716789 Desulfohalobium retbaense DSM 5692 8418406 YP_003197470.1 CDS Dret_0595 NC_013223.1 716794 717774 D TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: dps:DP2682 flagellar protein (FlgA); flagella basal body P-ring formation protein FlgA 716794..717774 Desulfohalobium retbaense DSM 5692 8418407 YP_003197471.1 CDS Dret_0596 NC_013223.1 717774 718463 D PFAM: flagellar L-ring protein; KEGG: pca:Pcar_1154 flagellar biosynthesis, basal- body outer-membrane L (lipopolysaccharide layer) ring protein; flagellar L-ring protein 717774..718463 Desulfohalobium retbaense DSM 5692 8418408 YP_003197472.1 CDS Dret_0597 NC_013223.1 718503 719612 D PFAM: flagellar P-ring protein; KEGG: pca:Pcar_1153 flagellar basal body P-ring protein; flagellar P-ring protein 718503..719612 Desulfohalobium retbaense DSM 5692 8418409 YP_003197473.1 CDS Dret_0598 NC_013223.1 719661 719990 D PFAM: Flagellar protein FlgJ-like; KEGG: pca:Pcar_1152 putative FlgJ-like flagellar protein; Flagellar protein FlgJ-like protein 719661..719990 Desulfohalobium retbaense DSM 5692 8418410 YP_003197474.1 CDS Dret_0599 NC_013223.1 720315 721541 R PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(720315..721541) Desulfohalobium retbaense DSM 5692 8418411 YP_003197475.1 CDS Dret_0600 NC_013223.1 722079 722342 D PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: pca:Pcar_1151 putative anti-sigma-28 factor FlgM; anti-sigma-28 factor FlgM 722079..722342 Desulfohalobium retbaense DSM 5692 8418412 YP_003197476.1 CDS Dret_0601 NC_013223.1 722347 722706 D KEGG: dps:DP2688 hypothetical protein; hypothetical protein 722347..722706 Desulfohalobium retbaense DSM 5692 8418413 YP_003197477.1 CDS Dret_0602 NC_013223.1 722709 724391 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellin hook IN repeat protein; KEGG: dps:DP2689 flagellar hook-associated protein 1 (FlgK); flagellar hook-associated protein FlgK 722709..724391 Desulfohalobium retbaense DSM 5692 8418414 YP_003197478.1 CDS Dret_0603 NC_013223.1 724394 725272 D TIGRFAM: flagellar hook-associated protein 3; KEGG: pca:Pcar_1148 flagellar hook-filament junction protein; flagellar hook-associated protein 3 724394..725272 Desulfohalobium retbaense DSM 5692 8418415 YP_003197479.1 CDS Dret_0604 NC_013223.1 725335 725595 D TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator; KEGG: dps:DP2691 carbon storage regulator (CsrA); carbon storage regulator CsrA 725335..725595 Desulfohalobium retbaense DSM 5692 8418416 YP_003197480.1 CDS Dret_0605 NC_013223.1 725582 726046 D binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 725582..726046 Desulfohalobium retbaense DSM 5692 8418417 YP_003197481.1 CDS Dret_0606 NC_013223.1 726308 727522 R KEGG: dal:Dalk_4137 hypothetical protein; hypothetical protein complement(726308..727522) Desulfohalobium retbaense DSM 5692 8418418 YP_003197482.1 CDS Dret_0607 NC_013223.1 727557 728066 D hypothetical protein 727557..728066 Desulfohalobium retbaense DSM 5692 8418419 YP_003197483.1 CDS Dret_0608 NC_013223.1 728690 729511 R KEGG: cja:CJA_0432 SrpA-related protein; hypothetical protein complement(728690..729511) Desulfohalobium retbaense DSM 5692 8418420 YP_003197484.1 CDS Dret_0609 NC_013223.1 730236 731237 D TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase; PFAM: polysaccharide biosynthesis protein CapD; 3- beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; short- chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: dat:HRM2_36710 putative polysaccharide biosynthesis protein (NAD-dependent epimerase/dehydratase family protein); UDP-N-acetylglucosamine 4,6-dehydratase 730236..731237 Desulfohalobium retbaense DSM 5692 8418421 YP_003197485.1 CDS Dret_0610 NC_013223.1 731234 732451 D TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4- aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: aeh:Mlg_2323 DegT/DnrJ/EryC1/StrS aminotransferase; UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase 731234..732451 Desulfohalobium retbaense DSM 5692 8418422 YP_003197486.1 CDS Dret_0611 NC_013223.1 732559 734268 D PFAM: LmbE family protein; KEGG: pca:Pcar_1118 hypothetical protein; LmbE family protein 732559..734268 Desulfohalobium retbaense DSM 5692 8418423 YP_003197487.1 CDS Dret_0612 NC_013223.1 734261 735913 D PFAM: peptidase M20; KEGG: bav:BAV0460 amidohydrolase/peptidase/deacetylase; peptidase M20 734261..735913 Desulfohalobium retbaense DSM 5692 8418424 YP_003197488.1 CDS Dret_0613 NC_013223.1 735913 736995 D PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: vei:Veis_1396 oxidoreductase domain- containing protein; oxidoreductase domain-containing protein 735913..736995 Desulfohalobium retbaense DSM 5692 8418425 YP_003197489.1 CDS Dret_0614 NC_013223.1 736999 737997 D PFAM: N-acetylneuraminic acid synthase domain; KEGG: gme:Gmet_0455 N-acetylneuraminate synthase; N-acetylneuraminic acid synthase domain-containing protein 736999..737997 Desulfohalobium retbaense DSM 5692 8418426 YP_003197490.1 CDS Dret_0615 NC_013223.1 737994 738989 D PFAM: formyl transferase domain protein; KEGG: gur:Gura_0819 methionyl-tRNA formyltransferase; formyl transferase domain-containing protein 737994..738989 Desulfohalobium retbaense DSM 5692 8418427 YP_003197491.1 CDS Dret_0616 NC_013223.1 738994 740829 D PFAM: acylneuraminate cytidylyltransferase; KEGG: dde:Dde_0421 spore coat polysaccharide biosynthesis protein FlmC; acylneuraminate cytidylyltransferase 738994..740829 Desulfohalobium retbaense DSM 5692 8418428 YP_003197492.1 CDS Dret_0617 NC_013223.1 740826 741758 D PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: gme:Gmet_0453 hypothetical protein; type 12 methyltransferase 740826..741758 Desulfohalobium retbaense DSM 5692 8418429 YP_003197493.1 CDS Dret_0618 NC_013223.1 741786 743003 D KEGG: dde:Dde_0419 hypothetical protein; hypothetical protein 741786..743003 Desulfohalobium retbaense DSM 5692 8418430 YP_003197494.1 CDS Dret_0619 NC_013223.1 743034 744266 D PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; KEGG: dde:Dde_0418 hypothetical protein; phosphoribosylglycinamide synthetase 743034..744266 Desulfohalobium retbaense DSM 5692 8418431 YP_003197495.1 CDS Dret_0620 NC_013223.1 744298 745020 D KEGG: dat:HRM2_36850 NeuA; TIGRFAM: pseudaminic acid CMP-transferase; PFAM: acylneuraminate cytidylyltransferase; pseudaminic acid CMP-transferase 744298..745020 Desulfohalobium retbaense DSM 5692 8418432 YP_003197496.1 CDS Dret_0621 NC_013223.1 745346 747073 D PFAM: transposase IS4 family protein; KEGG: dal:Dalk_3879 transposase-like protein; transposase IS4 family protein 745346..747073 Desulfohalobium retbaense DSM 5692 8418433 YP_003197497.1 CDS Dret_0622 NC_013223.1 747084 748895 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: avn:Avin_24740 RNA-directed DNA polymerase; RNA-directed DNA polymerase 747084..748895 Desulfohalobium retbaense DSM 5692 8418434 YP_003197498.1 CDS Dret_0625 NC_013223.1 750009 751346 D PFAM: transposase IS4 family protein; KEGG: maq:Maqu_0982 transposase, IS4 family protein; transposase IS4 family protein 750009..751346 Desulfohalobium retbaense DSM 5692 8418437 YP_003197499.1 CDS Dret_0626 NC_013223.1 751886 753211 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: ecl:EcolC_2197 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 751886..753211 Desulfohalobium retbaense DSM 5692 8418438 YP_003197500.1 CDS Dret_0628 NC_013223.1 754669 755175 D PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: TPR Domain containing protein; hypothetical protein 754669..755175 Desulfohalobium retbaense DSM 5692 8418440 YP_003197501.1 CDS Dret_0629 NC_013223.1 755211 757148 D PFAM: protein of unknown function DUF115; KEGG: pat:Patl_3053 hypothetical protein; hypothetical protein 755211..757148 Desulfohalobium retbaense DSM 5692 8418441 YP_003197502.1 CDS Dret_0630 NC_013223.1 757455 758300 D PFAM: flagellin domain protein; KEGG: pca:Pcar_1114 flagellin/flagellar hook- associated protein; flagellin domain-containing protein 757455..758300 Desulfohalobium retbaense DSM 5692 8418442 YP_003197503.1 CDS Dret_0631 NC_013223.1 758349 759194 D PFAM: flagellin domain protein; KEGG: pca:Pcar_1114 flagellin/flagellar hook- associated protein; flagellin domain-containing protein 758349..759194 Desulfohalobium retbaense DSM 5692 8418443 YP_003197504.1 CDS Dret_0632 NC_013223.1 759275 759700 D PFAM: flagellar protein FlaG protein; KEGG: lhk:LHK_02704 FlaG; flagellar protein FlaG protein 759275..759700 Desulfohalobium retbaense DSM 5692 8418444 YP_003197505.1 CDS Dret_0633 NC_013223.1 759749 761152 D PFAM: flagellar hook-associated 2 domain protein; flagellar hook-associated protein 2 domain protein; KEGG: spl:Spea_1354 flagellar hook-associated 2 domain-containing protein; flagellar hook-associated 2 domain-containing protein 759749..761152 Desulfohalobium retbaense DSM 5692 8418445 YP_003197506.1 CDS Dret_0634 NC_013223.1 761168 761626 D TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: gur:Gura_4093 flagellar protein FliS; flagellar protein FliS 761168..761626 Desulfohalobium retbaense DSM 5692 8418446 YP_003197507.1 CDS Dret_0635 NC_013223.1 761592 761771 D hypothetical protein 761592..761771 Desulfohalobium retbaense DSM 5692 8418447 YP_003197508.1 CDS Dret_0636 NC_013223.1 761845 762450 D PFAM: type IV pilus assembly PilZ; KEGG: pca:Pcar_1109 hypothetical protein; type IV pilus assembly PilZ 761845..762450 Desulfohalobium retbaense DSM 5692 8418448 YP_003197509.1 CDS Dret_0637 NC_013223.1 762973 763800 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA208 transposition helper protein; IstB domain-containing protein ATP-binding protein complement(762973..763800) Desulfohalobium retbaense DSM 5692 8418449 YP_003197510.1 CDS Dret_0638 NC_013223.1 763879 765393 R PFAM: Integrase catalytic region; KEGG: dma:DMR_29110 putative transposase orfA for insertion sequence element; integrase catalytic subunit complement(763879..765393) Desulfohalobium retbaense DSM 5692 8418450 YP_003197511.1 CDS Dret_0639 NC_013223.1 765458 765568 D hypothetical protein 765458..765568 Desulfohalobium retbaense DSM 5692 8418451 YP_003197512.1 CDS Dret_0640 NC_013223.1 765883 766947 D KEGG: dps:DP2483 hypothetical protein; hypothetical protein 765883..766947 Desulfohalobium retbaense DSM 5692 8418452 YP_003197513.1 CDS Dret_0642 NC_013223.1 767464 769014 R PFAM: transposase IS66; KEGG: dma:DMR_41410 putative transposase orf3 for insertion sequence element; transposase IS66 complement(767464..769014) Desulfohalobium retbaense DSM 5692 8418454 YP_003197514.1 CDS Dret_0643 NC_013223.1 769064 769417 R PFAM: IS66 Orf2 family protein; KEGG: dat:HRM2_43710 transposase; IS66 Orf2 family protein complement(769064..769417) Desulfohalobium retbaense DSM 5692 8418455 YP_003197515.1 CDS Dret_0644 NC_013223.1 769414 769755 R KEGG: dma:DMR_41530 putative transposase orf1 for insertion sequence element; putative transposase orf1 for insertion sequence element complement(769414..769755) Desulfohalobium retbaense DSM 5692 8418456 YP_003197516.1 CDS Dret_0646 NC_013223.1 771449 772675 D PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 771449..772675 Desulfohalobium retbaense DSM 5692 8418458 YP_003197517.1 CDS Dret_0647 NC_013223.1 772961 773482 R hypothetical protein complement(772961..773482) Desulfohalobium retbaense DSM 5692 8418459 YP_003197518.1 CDS Dret_0648 NC_013223.1 773796 774065 R KEGG: pca:Pcar_1105 hypothetical protein; hypothetical protein complement(773796..774065) Desulfohalobium retbaense DSM 5692 8418460 YP_003197519.1 CDS Dret_0649 NC_013223.1 774644 776722 R KEGG: dps:DP2649 two-component system response regulator; response regulator receiver protein complement(774644..776722) Desulfohalobium retbaense DSM 5692 8418461 YP_003197520.1 CDS Dret_0650 NC_013223.1 776722 777198 R KEGG: pca:Pcar_1206 inhibitor of MCP methylation, CheC-like; inhibitor of MCP methylation, CheC-like protein complement(776722..777198) Desulfohalobium retbaense DSM 5692 8418462 YP_003197521.1 CDS Dret_0651 NC_013223.1 777374 777748 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pca:Pcar_1205 CheY response regulator; response regulator receiver protein complement(777374..777748) Desulfohalobium retbaense DSM 5692 8418463 YP_003197522.1 CDS Dret_0652 NC_013223.1 778212 780713 D KEGG: pca:Pcar_1196 hypothetical protein; hypothetical protein 778212..780713 Desulfohalobium retbaense DSM 5692 8418464 YP_003197523.1 CDS Dret_0653 NC_013223.1 780941 781351 D TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: geo:Geob_0491 flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB 780941..781351 Desulfohalobium retbaense DSM 5692 8418465 YP_003197524.1 CDS Dret_0654 NC_013223.1 781373 781801 D TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: pca:Pcar_1194 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 781373..781801 Desulfohalobium retbaense DSM 5692 8418466 YP_003197525.1 CDS Dret_0655 NC_013223.1 781806 782117 D TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: pca:Pcar_1193 flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE 781806..782117 Desulfohalobium retbaense DSM 5692 8418467 YP_003197526.1 CDS Dret_0656 NC_013223.1 782510 785125 D PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: ank:AnaeK_2487 CheA signal transduction histidine kinase; CheA signal transduction histidine kinase 782510..785125 Desulfohalobium retbaense DSM 5692 8418468 YP_003197527.1 CDS Dret_0657 NC_013223.1 785269 787122 D PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_1135 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 785269..787122 Desulfohalobium retbaense DSM 5692 8418469 YP_003197528.1 CDS Dret_0658 NC_013223.1 787239 787748 D PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: sat:SYN_00975 chemotaxis protein; CheW protein 787239..787748 Desulfohalobium retbaense DSM 5692 8418470 YP_003197529.1 CDS Dret_0659 NC_013223.1 788087 790483 D PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_1166 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 788087..790483 Desulfohalobium retbaense DSM 5692 8418471 YP_003197530.1 CDS Dret_0660 NC_013223.1 790562 792589 D PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_1135 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 790562..792589 Desulfohalobium retbaense DSM 5692 8418472 YP_003197531.1 CDS Dret_0661 NC_013223.1 792659 793474 D KEGG: ank:AnaeK_2486 MCP methyltransferase, CheR- type; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type; chemotaxis protein CheR 792659..793474 Desulfohalobium retbaense DSM 5692 8418473 YP_003197532.1 CDS Dret_0662 NC_013223.1 793654 794145 D PFAM: CheD family protein; KEGG: dal:Dalk_0652 CheD; CheD, stimulates methylation of MCP protein 793654..794145 Desulfohalobium retbaense DSM 5692 8418474 YP_003197533.1 CDS Dret_0663 NC_013223.1 794245 794634 D PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dat:HRM2_34440 putative chemotaxis response regulator receiver (CheY-like); response regulator receiver protein 794245..794634 Desulfohalobium retbaense DSM 5692 8418475 YP_003197534.1 CDS Dret_0664 NC_013223.1 794631 795101 D hypothetical protein 794631..795101 Desulfohalobium retbaense DSM 5692 8418476 YP_003197535.1 CDS Dret_0665 NC_013223.1 795098 796129 D KEGG: dal:Dalk_0655 response regulator receiver modulated CheB methylesterase; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver; response regulator receiver modulated CheB methylesterase 795098..796129 Desulfohalobium retbaense DSM 5692 8418477 YP_003197536.1 CDS Dret_0666 NC_013223.1 796295 796591 D KEGG: dvm:DvMF_0939 hypothetical protein; hypothetical protein 796295..796591 Desulfohalobium retbaense DSM 5692 8418478 YP_003197537.1 CDS Dret_0667 NC_013223.1 796643 797536 D PFAM: Metal-dependent hydrolase HDOD; metal- dependent phosphohydrolase HD sub domain; KEGG: rfr:Rfer_1986 metal dependent phosphohydrolase; metal dependent phosphohydrolase 796643..797536 Desulfohalobium retbaense DSM 5692 8418479 YP_003197538.1 CDS Dret_0668 NC_013223.1 797560 798102 D hypothetical protein 797560..798102 Desulfohalobium retbaense DSM 5692 8418480 YP_003197539.1 CDS Dret_0669 NC_013223.1 798191 798682 D KEGG: pca:Pcar_1201 CheD-like chemotaxis protein; CheD, stimulates methylation of MCP protein 798191..798682 Desulfohalobium retbaense DSM 5692 8418481 YP_003197540.1 CDS Dret_0670 NC_013223.1 798690 799553 D KEGG: pca:Pcar_1202 signal transduction protein; TIGRFAM: metal dependent phophohydrolase; PFAM: Metal-dependent hydrolase HDOD; metal- dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 798690..799553 Desulfohalobium retbaense DSM 5692 8418482 YP_003197541.1 CDS Dret_0671 NC_013223.1 800028 801530 R PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; KEGG: lpn:lpg1130 adenylate cyclase; adenylate/guanylate cyclase with integral membrane sensor complement(800028..801530) Desulfohalobium retbaense DSM 5692 8418483 YP_003197542.1 CDS Dret_0672 NC_013223.1 801622 802416 R PFAM: ADP-ribosylation/Crystallin J1; KEGG: dal:Dalk_0314 ADP-ribosylation/crystallin J1; ADP-ribosylation/Crystallin J1 complement(801622..802416) Desulfohalobium retbaense DSM 5692 8418484 YP_003197543.1 CDS Dret_0673 NC_013223.1 803158 804207 D PFAM: cobalamin B12-binding domain protein; KEGG: scl:sce4024 putative cobalamin binding protein; cobalamin B12-binding domain-containing protein 803158..804207 Desulfohalobium retbaense DSM 5692 8418485 YP_003197544.1 CDS Dret_0674 NC_013223.1 804294 805361 D KEGG: dde:Dde_3087 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 804294..805361 Desulfohalobium retbaense DSM 5692 8418486 YP_003197545.1 CDS Dret_0675 NC_013223.1 805693 807009 D PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dde:Dde_3572 type I phosphodiesterase/nucleotide pyrophosphatase family protein; type I phosphodiesterase/nucleotide pyrophosphatase 805693..807009 Desulfohalobium retbaense DSM 5692 8418488 YP_003197546.1 CDS Dret_0676 NC_013223.1 807217 807987 D PFAM: protein of unknown function DUF140; KEGG: sat:SYN_00411 ABC-type transport system involved in resistance to organic solvents, permease component; hypothetical protein 807217..807987 Desulfohalobium retbaense DSM 5692 8418489 YP_003197547.1 CDS Dret_0677 NC_013223.1 808013 808780 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00410 ABC-type transport system, ATP- binding component; ABC transporter 808013..808780 Desulfohalobium retbaense DSM 5692 8418490 YP_003197548.1 CDS Dret_0678 NC_013223.1 808792 810381 D PFAM: Mammalian cell entry related domain protein; KEGG: sat:SYN_00409 ABC-type transport system involved in resistance to organic solvents, periplasmic component; mammalian cell entry domain-containing protein 808792..810381 Desulfohalobium retbaense DSM 5692 8418491 YP_003197549.1 CDS Dret_0679 NC_013223.1 810415 810903 D TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: dma:DMR_39340 putative phosphoesterase; phosphodiesterase 810415..810903 Desulfohalobium retbaense DSM 5692 8418492 YP_003197550.1 CDS Dret_0680 NC_013223.1 811034 811252 D TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; KEGG: dvm:DvMF_2132 translation initiation factor IF-1; translation initiation factor IF-1 811034..811252 Desulfohalobium retbaense DSM 5692 8418493 YP_003197551.1 CDS Dret_0681 NC_013223.1 811436 811975 R KEGG: dde:Dde_2611 putative lipoprotein; putative lipoprotein complement(811436..811975) Desulfohalobium retbaense DSM 5692 8418494 YP_003197552.1 CDS Dret_0682 NC_013223.1 812073 812681 R KEGG: dde:Dde_2610 hypothetical protein; hypothetical protein complement(812073..812681) Desulfohalobium retbaense DSM 5692 8418495 YP_003197553.1 CDS Dret_0683 NC_013223.1 812647 813237 R PFAM: shikimate kinase; KEGG: dvl:Dvul_0723 shikimate kinase; shikimate kinase complement(812647..813237) Desulfohalobium retbaense DSM 5692 8418496 YP_003197554.1 CDS Dret_0684 NC_013223.1 813688 814275 R hypothetical protein complement(813688..814275) Desulfohalobium retbaense DSM 5692 8418497 YP_003197555.1 CDS Dret_0685 NC_013223.1 814394 815743 D TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: hha:Hhal_0607 amino acid carrier protein; amino acid carrier protein 814394..815743 Desulfohalobium retbaense DSM 5692 8418498 YP_003197556.1 CDS Dret_0686 NC_013223.1 816101 816712 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 816101..816712 Desulfohalobium retbaense DSM 5692 8418499 YP_003197557.1 CDS Dret_0687 NC_013223.1 816934 817176 D TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dde:Dde_2620 hypothetical protein; FmdB family regulatory protein 816934..817176 Desulfohalobium retbaense DSM 5692 8418500 YP_003197558.1 CDS Dret_0688 NC_013223.1 817321 818256 D KEGG: dvu:DVU1890 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 817321..818256 Desulfohalobium retbaense DSM 5692 8418501 YP_003197559.1 CDS Dret_0689 NC_013223.1 818574 819494 D TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: dvm:DvMF_0418 biotin/acetyl-CoA-carboxylase ligase; biotin--acetyl-CoA-carboxylase ligase 818574..819494 Desulfohalobium retbaense DSM 5692 8418502 YP_003197560.1 CDS Dret_0690 NC_013223.1 819563 823255 D biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 819563..823255 Desulfohalobium retbaense DSM 5692 8418503 YP_003197561.1 CDS Dret_0691 NC_013223.1 823311 826892 D PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; PEP- utilizing protein; KEGG: dde:Dde_2080 phosphoenolpyruvate synthase; pyruvate phosphate dikinase PEP/pyruvate- binding protein 823311..826892 Desulfohalobium retbaense DSM 5692 8418504 YP_003197562.1 CDS Dret_0692 NC_013223.1 827020 827253 R KEGG: dde:Dde_3025 hypothetical protein; hypothetical protein complement(827020..827253) Desulfohalobium retbaense DSM 5692 8418505 YP_003197563.1 CDS Dret_0693 NC_013223.1 827262 827570 R hypothetical protein complement(827262..827570) Desulfohalobium retbaense DSM 5692 8418506 YP_003197564.1 CDS Dret_0694 NC_013223.1 827754 828221 R PFAM: thioesterase superfamily protein; KEGG: dat:HRM2_17880 acyl-CoA thioester hydrolase; thioesterase superfamily protein complement(827754..828221) Desulfohalobium retbaense DSM 5692 8418507 YP_003197565.1 CDS Dret_0695 NC_013223.1 828585 829421 R PFAM: GCN5-related N-acetyltransferase; KEGG: pca:Pcar_1402 GNAT family acetyltransferase; N-acetyltransferase GCN5 complement(828585..829421) Desulfohalobium retbaense DSM 5692 8418508 YP_003197566.1 CDS Dret_0696 NC_013223.1 829408 830730 R KEGG: dde:Dde_0189 L-lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; lysine 2,3-aminomutase YodO family protein complement(829408..830730) Desulfohalobium retbaense DSM 5692 8418509 YP_003197567.1 CDS Dret_0697 NC_013223.1 831137 831985 D PFAM: PGAP1 family protein; KEGG: dde:Dde_1837 acetyltransferase and hydrolase with the alpha/beta hydrolase fold-like; PGAP1 family protein 831137..831985 Desulfohalobium retbaense DSM 5692 8418510 YP_003197568.1 CDS Dret_0698 NC_013223.1 832059 832445 R KEGG: tgr:Tgr7_0019 hypothetical protein; hypothetical protein complement(832059..832445) Desulfohalobium retbaense DSM 5692 8418511 YP_003197569.1 CDS Dret_0699 NC_013223.1 832617 832898 R hypothetical protein complement(832617..832898) Desulfohalobium retbaense DSM 5692 8418512 YP_003197570.1 CDS Dret_0700 NC_013223.1 833022 833846 R PFAM: Ion transport 2 domain protein; KEGG: pca:Pcar_2531 hypothetical protein; Ion transport 2 domain-containing protein complement(833022..833846) Desulfohalobium retbaense DSM 5692 8418513 YP_003197571.1 CDS Dret_0701 NC_013223.1 834655 836013 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dvl:Dvul_0090 two component, sigma54 specific, Fis family transcriptional regulator; two component, sigma54 specific, transcriptional regulator, Fis family complement(834655..836013) Desulfohalobium retbaense DSM 5692 8418514 YP_003197572.1 CDS Dret_0702 NC_013223.1 836196 836501 D hypothetical protein 836196..836501 Desulfohalobium retbaense DSM 5692 8418515 YP_003197573.1 CDS Dret_0703 NC_013223.1 836513 836917 R PFAM: helix-turn-helix HxlR type; KEGG: dde:Dde_1352 putative transcriptional regulator; HxlR family transcriptional regulator complement(836513..836917) Desulfohalobium retbaense DSM 5692 8418516 YP_003197574.1 CDS Dret_0704 NC_013223.1 837236 839629 R PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: dal:Dalk_5266 pyruvate, water dikinase; pyruvate phosphate dikinase PEP/pyruvate- binding protein complement(837236..839629) Desulfohalobium retbaense DSM 5692 8418517 YP_003197575.1 CDS Dret_0705 NC_013223.1 839629 840666 R PFAM: glycosyl transferase group 1; KEGG: bja:bll6635 glycosyl transferase; group 1 glycosyl transferase complement(839629..840666) Desulfohalobium retbaense DSM 5692 8418518 YP_003197576.1 CDS Dret_0706 NC_013223.1 840959 842815 R KEGG: sfu:Sfum_0551 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(840959..842815) Desulfohalobium retbaense DSM 5692 8418519 YP_003197577.1 CDS Dret_0707 NC_013223.1 842881 843021 D hypothetical protein 842881..843021 Desulfohalobium retbaense DSM 5692 8418520 YP_003197578.1 CDS Dret_0708 NC_013223.1 843444 844028 D KEGG: sfu:Sfum_3317 drug resistance transporter, EmrB/QacA subfamily; hypothetical protein 843444..844028 Desulfohalobium retbaense DSM 5692 8418521 YP_003197579.1 CDS Dret_0709 NC_013223.1 844013 844345 D KEGG: hypothetical protein; hypothetical protein 844013..844345 Desulfohalobium retbaense DSM 5692 8418522 YP_003197580.1 CDS Dret_0710 NC_013223.1 844517 845824 D TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; Protein of unknown function, PGPGW, transmembrane; KEGG: tbd:Tbd_2520 K+-dependent Na+/Ca+ exchanger related-protein; CaCA family Na+/Ca+ antiporter 844517..845824 Desulfohalobium retbaense DSM 5692 8418523 YP_003197581.1 CDS Dret_0711 NC_013223.1 845862 846335 R KEGG: dma:DMR_24260 hypothetical protein; hypothetical protein complement(845862..846335) Desulfohalobium retbaense DSM 5692 8418524 YP_003197582.1 CDS Dret_0712 NC_013223.1 846532 848067 D TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE; KEGG: dma:DMR_16950 hypothetical membrane protein; integral membrane protein MviN 846532..848067 Desulfohalobium retbaense DSM 5692 8418525 YP_003197583.1 CDS Dret_0713 NC_013223.1 848067 848816 D PFAM: methyltransferase small; putative RNA methylase; KEGG: dde:Dde_3501 hypothetical protein; methyltransferase small 848067..848816 Desulfohalobium retbaense DSM 5692 8418526 YP_003197584.1 CDS Dret_0714 NC_013223.1 848830 849513 R PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dvm:DvMF_2848 CBS domain containing membrane protein; hypothetical protein complement(848830..849513) Desulfohalobium retbaense DSM 5692 8418527 YP_003197585.1 CDS Dret_0715 NC_013223.1 849600 850772 D PFAM: protein of unknown function DUF111; KEGG: dde:Dde_0766 hypothetical protein; hypothetical protein 849600..850772 Desulfohalobium retbaense DSM 5692 8418528 YP_003197586.1 CDS Dret_0716 NC_013223.1 850833 852059 R PFAM: peptidase U32; KEGG: dde:Dde_3095 U32 family peptidase; peptidase U32 complement(850833..852059) Desulfohalobium retbaense DSM 5692 8418529 YP_003197587.1 CDS Dret_0717 NC_013223.1 852056 852931 R PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dde:Dde_3094 phosphoesterase PHP-like; PHP domain-containing protein complement(852056..852931) Desulfohalobium retbaense DSM 5692 8418530 YP_003197588.1 CDS Dret_0718 NC_013223.1 853118 853321 D PFAM: protein of unknown function DUF343; KEGG: dvu:DVU0656 hypothetical protein; hypothetical protein 853118..853321 Desulfohalobium retbaense DSM 5692 8418531 YP_003197589.1 CDS Dret_0719 NC_013223.1 853694 854107 D PFAM: heat shock protein Hsp20; KEGG: dma:DMR_11450 heat shock protein HSP20 family protein; heat shock protein Hsp20 853694..854107 Desulfohalobium retbaense DSM 5692 8418532 YP_003197590.1 CDS Dret_0720 NC_013223.1 854154 854516 D PFAM: heat shock protein Hsp20; KEGG: dma:DMR_11460 heat shock protein HSP20 family protein; heat shock protein Hsp20 854154..854516 Desulfohalobium retbaense DSM 5692 8418533 YP_003197591.1 CDS Dret_0721 NC_013223.1 854641 855483 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: dvl:Dvul_0185 TatD family hydrolase; TatD family hydrolase 854641..855483 Desulfohalobium retbaense DSM 5692 8418534 YP_003197592.1 CDS Dret_0722 NC_013223.1 855533 856264 R PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: sfu:Sfum_0420 cyclic nucleotide-binding protein; Crp family transcriptional regulator complement(855533..856264) Desulfohalobium retbaense DSM 5692 8418535 YP_003197593.1 CDS Dret_0723 NC_013223.1 856277 856714 R KEGG: dol:Dole_2356 hypothetical protein; hypothetical protein complement(856277..856714) Desulfohalobium retbaense DSM 5692 8418536 YP_003197594.1 CDS Dret_0724 NC_013223.1 856787 857023 R KEGG: dde:Dde_0181 hypothetical protein; hypothetical protein complement(856787..857023) Desulfohalobium retbaense DSM 5692 8418537 YP_003197595.1 CDS Dret_0725 NC_013223.1 857004 858065 R PFAM: peptidase M24; creatinase; KEGG: dvm:DvMF_1929 peptidase M24; peptidase M24 complement(857004..858065) Desulfohalobium retbaense DSM 5692 8418538 YP_003197596.1 CDS Dret_0726 NC_013223.1 858746 858946 D TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: mxa:MXAN_3269 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 858746..858946 Desulfohalobium retbaense DSM 5692 8418539 YP_003197597.1 CDS Dret_0727 NC_013223.1 858946 859731 D PFAM: thiazole biosynthesis family protein; KEGG: dde:Dde_1555 thiazole synthase; thiazole biosynthesis family protein 858946..859731 Desulfohalobium retbaense DSM 5692 8418540 YP_003197598.1 CDS Dret_0728 NC_013223.1 859871 860989 D TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; KEGG: dde:Dde_1556 thiamine biosynthesis protein ThiH; thiazole biosynthesis protein ThiH 859871..860989 Desulfohalobium retbaense DSM 5692 8418541 YP_003197599.1 CDS Dret_0729 NC_013223.1 860986 861645 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dvm:DvMF_0798 thiamine biosynthesis protein ThiF; UBA/THIF-type NAD/FAD binding protein 860986..861645 Desulfohalobium retbaense DSM 5692 8418542 YP_003197600.1 CDS Dret_0730 NC_013223.1 861759 862409 D KEGG: dvl:Dvul_1139 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 861759..862409 Desulfohalobium retbaense DSM 5692 8418543 YP_003197601.1 CDS Dret_0731 NC_013223.1 863059 864087 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dma:DMR_15300 hypothetical protein; radical SAM protein complement(863059..864087) Desulfohalobium retbaense DSM 5692 8418545 YP_003197602.1 CDS Dret_0732 NC_013223.1 864624 865688 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 864624..865688 Desulfohalobium retbaense DSM 5692 8418546 YP_003197603.1 CDS Dret_0733 NC_013223.1 865791 867062 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dma:DMR_15340 hypothetical protein; radical SAM protein complement(865791..867062) Desulfohalobium retbaense DSM 5692 8418547 YP_003197604.1 CDS rpsI NC_013223.1 867160 867552 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(867160..867552) Desulfohalobium retbaense DSM 5692 8418548 YP_003197605.1 CDS Dret_0735 NC_013223.1 867577 868014 R TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; KEGG: dde:Dde_2607 50S ribosomal protein L13; 50S ribosomal protein L13 complement(867577..868014) Desulfohalobium retbaense DSM 5692 8418549 YP_003197606.1 CDS Dret_0736 NC_013223.1 868353 869594 D KEGG: dvl:Dvul_0727 hypothetical protein; hypothetical protein 868353..869594 Desulfohalobium retbaense DSM 5692 8418550 YP_003197607.1 CDS Dret_0737 NC_013223.1 870129 870584 D TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: dma:DMR_33360 protein MraZ; MraZ protein 870129..870584 Desulfohalobium retbaense DSM 5692 8418551 YP_003197608.1 CDS mraW NC_013223.1 870581 871579 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: dde:Dde_1034 methyltransferase; S-adenosyl-methyltransferase MraW 870581..871579 Desulfohalobium retbaense DSM 5692 8418552 YP_003197609.1 CDS Dret_0739 NC_013223.1 871572 871844 D KEGG: dma:DMR_33340 hypothetical protein; hypothetical protein 871572..871844 Desulfohalobium retbaense DSM 5692 8418553 YP_003197610.1 CDS Dret_0740 NC_013223.1 871872 873809 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: dma:DMR_33330 peptidoglycan synthetase FtsI precursor; peptidoglycan glycosyltransferase 871872..873809 Desulfohalobium retbaense DSM 5692 8418554 YP_003197611.1 CDS Dret_0741 NC_013223.1 873832 875298 D TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: dvu:DVU2509 UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase; UDP-N-acetylmuramyl tripeptide synthetase 873832..875298 Desulfohalobium retbaense DSM 5692 8418555 YP_003197612.1 CDS Dret_0742 NC_013223.1 875289 876671 D TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-di aminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: dma:DMR_33310 UDP-N-acetylmuramoyl-tripeptide- -D-alanyl-D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase 875289..876671 Desulfohalobium retbaense DSM 5692 8418556 YP_003197613.1 CDS mraY NC_013223.1 876668 877744 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 876668..877744 Desulfohalobium retbaense DSM 5692 8418557 YP_003197614.1 CDS Dret_0744 NC_013223.1 877754 879088 D TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: dma:DMR_33290 UDP-N-acetylmuramoylalanine--D- glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 877754..879088 Desulfohalobium retbaense DSM 5692 8418558 YP_003197615.1 CDS Dret_0745 NC_013223.1 879066 880184 D TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: dma:DMR_33280 cell division protein FtsW; cell division protein FtsW 879066..880184 Desulfohalobium retbaense DSM 5692 8418559 YP_003197616.1 CDS Dret_0746 NC_013223.1 880184 881311 D KEGG: dvl:Dvul_0741 undecaprenyldiphospho- muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase 880184..881311 Desulfohalobium retbaense DSM 5692 8418560 YP_003197617.1 CDS murC NC_013223.1 881325 882689 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 881325..882689 Desulfohalobium retbaense DSM 5692 8418561 YP_003197618.1 CDS Dret_0748 NC_013223.1 882851 883738 D KEGG: dvl:Dvul_0743 UDP-N- acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 882851..883738 Desulfohalobium retbaense DSM 5692 8418562 YP_003197619.1 CDS Dret_0749 NC_013223.1 883735 884556 D PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: dvm:DvMF_0953 polypeptide-transport- associated domain protein FtsQ-type; Polypeptide-transport-associated domain-containing protein FtsQ-type 883735..884556 Desulfohalobium retbaense DSM 5692 8418563 YP_003197620.1 CDS Dret_0750 NC_013223.1 884621 885853 D TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: dvl:Dvul_0745 cell division protein FtsA; cell division protein FtsA 884621..885853 Desulfohalobium retbaense DSM 5692 8418564 YP_003197621.1 CDS Dret_0751 NC_013223.1 885926 887200 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 885926..887200 Desulfohalobium retbaense DSM 5692 8418565 YP_003197622.1 CDS Dret_0752 NC_013223.1 887549 889450 R molecular chaperone; heat shock protein 90 complement(887549..889450) Desulfohalobium retbaense DSM 5692 8418566 YP_003197623.1 CDS Dret_0753 NC_013223.1 889773 891692 D PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: sfu:Sfum_3195 molybdopterin oxidoreductase; nitrate reductase 889773..891692 Desulfohalobium retbaense DSM 5692 8418567 YP_003197624.1 CDS Dret_0754 NC_013223.1 891682 893334 D KEGG: dat:HRM2_18850 hypothetical protein; hypothetical protein 891682..893334 Desulfohalobium retbaense DSM 5692 8418568 YP_003197625.1 CDS Dret_0755 NC_013223.1 893635 894405 D PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: dol:Dole_2023 hypothetical protein; nickel transport complex transmembrane protein NikM 893635..894405 Desulfohalobium retbaense DSM 5692 8418569 YP_003197626.1 CDS Dret_0756 NC_013223.1 894509 895123 D PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dds:Ddes_1471 cobalamin (vitamin B12) biosynthesis CbiM protein; cobalamin (vitamin B12) biosynthesis protein CbiM 894509..895123 Desulfohalobium retbaense DSM 5692 8418570 YP_003197627.1 CDS Dret_0757 NC_013223.1 895125 895742 D KEGG: dds:Ddes_1472 hypothetical protein; hypothetical protein 895125..895742 Desulfohalobium retbaense DSM 5692 8418571 YP_003197628.1 CDS Dret_0758 NC_013223.1 895965 896453 D PFAM: UspA domain protein; KEGG: afw:Anae109_0806 UspA domain-containing protein; UspA domain-containing protein 895965..896453 Desulfohalobium retbaense DSM 5692 8418572 YP_003197629.1 CDS Dret_0759 NC_013223.1 896872 898113 D KEGG: dds:Ddes_1739 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 896872..898113 Desulfohalobium retbaense DSM 5692 8418574 YP_003197630.1 CDS Dret_0760 NC_013223.1 898137 899555 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 898137..899555 Desulfohalobium retbaense DSM 5692 8418575 YP_003197631.1 CDS Dret_0761 NC_013223.1 899805 901190 D catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 899805..901190 Desulfohalobium retbaense DSM 5692 8418576 YP_003197632.1 CDS Dret_0762 NC_013223.1 901196 903100 D TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Elongation factor SelB winged helix 3; Elongation factor SelB winged helix 2; elongation factor Tu domain 2 protein; KEGG: dvl:Dvul_2441 selenocysteine-specific translation elongation factor; selenocysteine-specific translation elongation factor 901196..903100 Desulfohalobium retbaense DSM 5692 8418577 YP_003197633.1 CDS Dret_0763 NC_013223.1 903532 904785 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 903532..904785 Desulfohalobium retbaense DSM 5692 8418579 YP_003197634.1 CDS Dret_0764 NC_013223.1 904899 907334 D TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: dde:Dde_0547 ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2 904899..907334 Desulfohalobium retbaense DSM 5692 8418580 YP_003197635.1 CDS Dret_0765 NC_013223.1 907473 908465 R KEGG: dde:Dde_3607 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase complement(907473..908465) Desulfohalobium retbaense DSM 5692 8418581 YP_003197636.1 CDS Dret_0766 NC_013223.1 908784 909425 R PFAM: peptidase M50; KEGG: dma:DMR_30590 peptidase M50B family protein; peptidase M50 complement(908784..909425) Desulfohalobium retbaense DSM 5692 8418582 YP_003197637.1 CDS Dret_0767 NC_013223.1 909599 910621 R PFAM: glycosyl transferase family 2; KEGG: dvm:DvMF_2329 glycosyl transferase family 2; family 2 glycosyl transferase complement(909599..910621) Desulfohalobium retbaense DSM 5692 8418583 YP_003197638.1 CDS Dret_0768 NC_013223.1 910883 911794 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dat:HRM2_29620 ABC-type glycine betaine/proline transport system, periplasmic glycine betaine/proline-binding protein; glycine/betaine ABC transporter substrate-binding protein complement(910883..911794) Desulfohalobium retbaense DSM 5692 8418584 YP_003197639.1 CDS Dret_0769 NC_013223.1 911826 912563 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_29610 ABC-type glycine betaine/proline transport system, inner membrane permease protein; binding-protein-dependent transport system inner membrane protein complement(911826..912563) Desulfohalobium retbaense DSM 5692 8418585 YP_003197640.1 CDS Dret_0770 NC_013223.1 912560 913228 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_2353 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(912560..913228) Desulfohalobium retbaense DSM 5692 8418586 YP_003197641.1 CDS Dret_0771 NC_013223.1 913243 914385 R KEGG: dat:HRM2_29570 ABC-type glycine betaine/proline transport system, ATP-binding protein (ATPase); TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase complement(913243..914385) Desulfohalobium retbaense DSM 5692 8418587 YP_003197642.1 CDS Dret_0772 NC_013223.1 915226 916881 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: dvu:DVU0283 AhpF family protein/thioredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(915226..916881) Desulfohalobium retbaense DSM 5692 8418588 YP_003197643.1 CDS Dret_0773 NC_013223.1 916970 917728 D KEGG: gsu:GSU1612 phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 916970..917728 Desulfohalobium retbaense DSM 5692 8418589 YP_003197644.1 CDS Dret_0774 NC_013223.1 917827 918780 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: gsu:GSU1528 ABC transporter, periplasmic substrate-binding protein; family 3 extracellular solute-binding protein 917827..918780 Desulfohalobium retbaense DSM 5692 8418590 YP_003197645.1 CDS Dret_0775 NC_013223.1 918904 920061 D PFAM: major facilitator superfamily MFS_1; KEGG: maq:Maqu_2048 major facilitator superfamily transporter; major facilitator superfamily protein 918904..920061 Desulfohalobium retbaense DSM 5692 8418591 YP_003197646.1 CDS Dret_0776 NC_013223.1 920169 921611 R PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dvm:DvMF_1859 putative two component, sigma54 specific, transcriptional regulator, fis family; putative two component, sigma54 specific, transcriptional regulator, Fis family complement(920169..921611) Desulfohalobium retbaense DSM 5692 8418592 YP_003197647.1 CDS Dret_0777 NC_013223.1 921724 924783 R KEGG: dvm:DvMF_1858 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase complement(921724..924783) Desulfohalobium retbaense DSM 5692 8418593 YP_003197648.1 CDS Dret_0778 NC_013223.1 924896 926215 R PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: dde:Dde_1253 malate dehydrogenase; Malate dehydrogenase (oxaloacetate- decarboxylating) (NADP(+)) complement(924896..926215) Desulfohalobium retbaense DSM 5692 8418594 YP_003197649.1 CDS Dret_0779 NC_013223.1 926447 927019 R TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy- lyase; PFAM: flavoprotein; KEGG: dvl:Dvul_0082 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(926447..927019) Desulfohalobium retbaense DSM 5692 8418595 YP_003197650.1 CDS Dret_0780 NC_013223.1 927422 928156 D TIGRFAM: SagB-type dehydrogenase domain; PFAM: nitroreductase; KEGG: dal:Dalk_3108 nitroreductase; SagB-type dehydrogenase domain-containing protein 927422..928156 Desulfohalobium retbaense DSM 5692 8418597 YP_003197651.1 CDS proA NC_013223.1 929072 930442 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 929072..930442 Desulfohalobium retbaense DSM 5692 8418599 YP_003197652.1 CDS Dret_0782 NC_013223.1 930445 931074 D KEGG: dvm:DvMF_0613 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 930445..931074 Desulfohalobium retbaense DSM 5692 8418600 YP_003197653.1 CDS Dret_0783 NC_013223.1 931237 932109 R KEGG: dvl:Dvul_2509 hypothetical protein; hypothetical protein complement(931237..932109) Desulfohalobium retbaense DSM 5692 8418601 YP_003197654.1 CDS Dret_0784 NC_013223.1 932253 932513 R hypothetical protein complement(932253..932513) Desulfohalobium retbaense DSM 5692 8418602 YP_003197655.1 CDS Dret_0785 NC_013223.1 932647 934029 R KEGG: dvl:Dvul_0991 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; chromosomal replication initiator protein DnaA complement(932647..934029) Desulfohalobium retbaense DSM 5692 8418603 YP_003197656.1 CDS Dret_0786 NC_013223.1 934362 934553 R KEGG: dma:DMR_03780 hypothetical protein; hypothetical protein complement(934362..934553) Desulfohalobium retbaense DSM 5692 8418604 YP_003197657.1 CDS Dret_0787 NC_013223.1 934642 935154 R PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: dat:HRM2_35320 putative cyclic nucleotide- binding protein; Crp family transcriptional regulator complement(934642..935154) Desulfohalobium retbaense DSM 5692 8418605 YP_003197658.1 CDS Dret_0788 NC_013223.1 935170 936936 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rec:RHECIAT_CH0003629 putative monovalent cation/H+ antiporter subunit D; NADH/ubiquinone/plastoquinone complement(935170..936936) Desulfohalobium retbaense DSM 5692 8418606 YP_003197659.1 CDS Dret_0789 NC_013223.1 936929 937417 R PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rhi:NGR_c22160 hypothetical protein; biotin/lipoyl attachment domain-containing protein complement(936929..937417) Desulfohalobium retbaense DSM 5692 8418607 YP_003197660.1 CDS Dret_0790 NC_013223.1 937424 938926 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: dat:HRM2_35350 MnhA2; NADH/ubiquinone/plastoquinone complement(937424..938926) Desulfohalobium retbaense DSM 5692 8418608 YP_003197661.1 CDS Dret_0791 NC_013223.1 939051 940541 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: dal:Dalk_4922 NADH dehydrogenase (quinone); NADH/ubiquinone/plastoquinone complement(939051..940541) Desulfohalobium retbaense DSM 5692 8418609 YP_003197662.1 CDS Dret_0792 NC_013223.1 940538 940939 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: dal:Dalk_4921 NADH-ubiquinone oxidoreductase chain 4L; NADH-ubiquinone oxidoreductase chain 4L complement(940538..940939) Desulfohalobium retbaense DSM 5692 8418610 YP_003197663.1 CDS Dret_0794 NC_013223.1 942007 942348 R TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: dat:HRM2_35390 MnhG; monovalent cation/proton antiporter subunit MnhG/PhaG complement(942007..942348) Desulfohalobium retbaense DSM 5692 8418612 YP_003197664.1 CDS Dret_0795 NC_013223.1 942406 942699 R PFAM: multiple resistance and pH regulation protein F; KEGG: dal:Dalk_4918 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F complement(942406..942699) Desulfohalobium retbaense DSM 5692 8418613 YP_003197665.1 CDS Dret_0796 NC_013223.1 942701 943288 R PFAM: cation antiporter; KEGG: dat:HRM2_35410 MnhE; cation antiporter complement(942701..943288) Desulfohalobium retbaense DSM 5692 8418614 YP_003197666.1 CDS Dret_0797 NC_013223.1 943580 944053 R KEGG: dma:DMR_23660 hypothetical protein; hypothetical protein complement(943580..944053) Desulfohalobium retbaense DSM 5692 8418615 YP_003197667.1 CDS Dret_0798 NC_013223.1 944302 945504 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(944302..945504) Desulfohalobium retbaense DSM 5692 8418616 YP_003197668.1 CDS Dret_0799 NC_013223.1 945789 947786 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 945789..947786 Desulfohalobium retbaense DSM 5692 8418617 YP_003197669.1 CDS Dret_0800 NC_013223.1 947895 948890 D PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: dma:DMR_23650 potassium channel protein; TrkA-N domain-containing protein 947895..948890 Desulfohalobium retbaense DSM 5692 8418618 YP_003197670.1 CDS Dret_0801 NC_013223.1 949100 951136 D KEGG: dvu:DVU1608 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4- type; NAD-dependent DNA ligase OB-fold; SMART: NAD-dependent DNA ligase ; BRCT domain protein; NAD-dependent DNA ligase 949100..951136 Desulfohalobium retbaense DSM 5692 8418619 YP_003197671.1 CDS Dret_0802 NC_013223.1 951257 952039 R PFAM: protein of unknown function DUF362; KEGG: pca:Pcar_2517 putative iron-sulfur cluster- binding protein; hypothetical protein complement(951257..952039) Desulfohalobium retbaense DSM 5692 8418620 YP_003197672.1 CDS Dret_0803 NC_013223.1 952169 952960 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 952169..952960 Desulfohalobium retbaense DSM 5692 8418621 YP_003197673.1 CDS Dret_0804 NC_013223.1 953027 953935 D KEGG: dvl:Dvul_1993 hypothetical protein; hypothetical protein 953027..953935 Desulfohalobium retbaense DSM 5692 8418622 YP_003197674.1 CDS Dret_0805 NC_013223.1 953945 954649 D TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: dma:DMR_23960 outer membrane lipoprotein carrier protein precursor; outer membrane lipoprotein carrier protein LolA 953945..954649 Desulfohalobium retbaense DSM 5692 8418623 YP_003197675.1 CDS Dret_0806 NC_013223.1 954796 955620 R PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: dvm:DvMF_0369 pseudouridine synthase; pseudouridine synthase complement(954796..955620) Desulfohalobium retbaense DSM 5692 8418624 YP_003197676.1 CDS Dret_0807 NC_013223.1 955943 956578 R TIGRFAM: selenium metabolism protein YedF; PFAM: SirA family protein; KEGG: dvm:DvMF_0368 hypothetical protein; selenium metabolism protein YedF complement(955943..956578) Desulfohalobium retbaense DSM 5692 8418625 YP_003197677.1 CDS Dret_0808 NC_013223.1 956753 957403 D PFAM: protein of unknown function DUF374; KEGG: dvm:DvMF_0366 protein of unknown function DUF374; hypothetical protein 956753..957403 Desulfohalobium retbaense DSM 5692 8418626 YP_003197678.1 CDS Dret_0809 NC_013223.1 957396 958280 D PFAM: lipid A biosynthesis acyltransferase; KEGG: dvm:DvMF_0365 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 957396..958280 Desulfohalobium retbaense DSM 5692 8418627 YP_003197679.1 CDS Dret_0810 NC_013223.1 958277 958936 D PFAM: SUA5/yciO/yrdC domain; KEGG: dma:DMR_22900 hypothetical protein; SUA5/yciO/yrdC domain-containing protein 958277..958936 Desulfohalobium retbaense DSM 5692 8418628 YP_003197680.1 CDS Dret_0811 NC_013223.1 959449 960444 R PFAM: glycosyl transferase family 9; KEGG: dma:DMR_22890 putative glycosyltransferase; glycosyl transferase family protein complement(959449..960444) Desulfohalobium retbaense DSM 5692 8418629 YP_003197681.1 CDS Dret_0812 NC_013223.1 960568 961068 D PFAM: NUDIX hydrolase; KEGG: dde:Dde_2287 MutT/NUDIX family protein; NUDIX hydrolase 960568..961068 Desulfohalobium retbaense DSM 5692 8418630 YP_003197682.1 CDS Dret_0813 NC_013223.1 961056 961955 D PFAM: ROK family protein; KEGG: gbm:Gbem_1326 ROK family protein; ROK family protein 961056..961955 Desulfohalobium retbaense DSM 5692 8418631 YP_003197683.1 CDS Dret_0814 NC_013223.1 962046 963512 D TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; KEGG: dvm:DvMF_0841 glycogen/starch synthase, ADP- glucose type; glycogen/starch synthase 962046..963512 Desulfohalobium retbaense DSM 5692 8418632 YP_003197684.1 CDS Dret_0815 NC_013223.1 964014 964319 D PFAM: glycoside hydrolase family 13 domain protein; KEGG: dma:DMR_37990 hypothetical protein; glycoside hydrolase family 13 964014..964319 Desulfohalobium retbaense DSM 5692 8418633 YP_003197685.1 CDS Dret_0816 NC_013223.1 964319 965335 D KEGG: dma:DMR_22850 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 964319..965335 Desulfohalobium retbaense DSM 5692 8418634 YP_003197686.1 CDS Dret_0817 NC_013223.1 965449 966003 D PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: dde:Dde_2318 transcriptional regulator; XRE family transcriptional regulator 965449..966003 Desulfohalobium retbaense DSM 5692 8418635 YP_003197687.1 CDS Dret_0818 NC_013223.1 966115 967764 D PFAM: AMP-dependent synthetase and ligase; KEGG: dvm:DvMF_0003 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 966115..967764 Desulfohalobium retbaense DSM 5692 8418636 YP_003197688.1 CDS Dret_0819 NC_013223.1 968370 969131 D KEGG: lpf:lpl0227 hypothetical protein; hypothetical protein 968370..969131 Desulfohalobium retbaense DSM 5692 8418637 YP_003197689.1 CDS Dret_0820 NC_013223.1 969225 969641 R hypothetical protein complement(969225..969641) Desulfohalobium retbaense DSM 5692 8418638 YP_003197690.1 CDS Dret_0821 NC_013223.1 970015 970887 R KEGG: dar:Daro_0659 hypothetical protein; hypothetical protein complement(970015..970887) Desulfohalobium retbaense DSM 5692 8418639 YP_003197691.1 CDS Dret_0822 NC_013223.1 971740 972411 D PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: eic:NT01EI_1213 nitrate/nitrite response regulator protein NarP; two component transcriptional regulator, LuxR family 971740..972411 Desulfohalobium retbaense DSM 5692 8418640 YP_003197692.1 CDS Dret_0823 NC_013223.1 972652 975093 D PFAM: peptidase S16 lon domain protein; KEGG: ade:Adeh_1447 ATP-dependent protease, putative; peptidase S16 lon domain-containing protein 972652..975093 Desulfohalobium retbaense DSM 5692 8418641 YP_003197693.1 CDS Dret_0824 NC_013223.1 975083 975949 D PFAM: UspA domain protein; KEGG: aeh:Mlg_1516 UspA domain-containing protein; UspA domain-containing protein 975083..975949 Desulfohalobium retbaense DSM 5692 8418642 YP_003197694.1 CDS Dret_0825 NC_013223.1 976131 977711 D PFAM: Stage II sporulation E family protein; response regulator receiver; SMART: protein phosphatase 2C domain protein; response regulator receiver; KEGG: sat:SYN_00230 response regulator receiver domain-containing protein; response regulator receiver modulated serine phosphatase 976131..977711 Desulfohalobium retbaense DSM 5692 8418643 YP_003197695.1 CDS Dret_0826 NC_013223.1 977742 978380 R KEGG: dde:Dde_1491 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; SMART: HhH-GPD family protein; iron-sulfur cluster loop; endonuclease III complement(977742..978380) Desulfohalobium retbaense DSM 5692 8418644 YP_003197696.1 CDS Dret_0827 NC_013223.1 978507 978776 D KEGG: dvm:DvMF_1980 hypothetical protein; hypothetical protein 978507..978776 Desulfohalobium retbaense DSM 5692 8418645 YP_003197697.1 CDS Dret_0828 NC_013223.1 978857 979207 D PFAM: CutA1 divalent ion tolerance protein; KEGG: dal:Dalk_3429 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 978857..979207 Desulfohalobium retbaense DSM 5692 8418646 YP_003197698.1 CDS Dret_0829 NC_013223.1 979204 980283 D KEGG: dma:DMR_17290 hypothetical protein; hypothetical protein 979204..980283 Desulfohalobium retbaense DSM 5692 8418647 YP_003197699.1 CDS Dret_0830 NC_013223.1 980806 983100 D TIGRFAM: cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Cysteinyl-tRNA synthetase class Ia; KEGG: dma:DMR_30710 cysteine synthase B; cysteine synthase 980806..983100 Desulfohalobium retbaense DSM 5692 8418648 YP_003197700.1 CDS Dret_0831 NC_013223.1 983387 984940 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; GAF domain protein; KEGG: dde:Dde_1635 Fis family transcriptional regulator; Fis family NifA subfamily transcriptional regulator complement(983387..984940) Desulfohalobium retbaense DSM 5692 8418649 YP_003197701.1 CDS Dret_0832 NC_013223.1 984943 985533 R PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: dvl:Dvul_1218 indolepyruvate ferredoxin oxidoreductase; Indolepyruvate ferredoxin oxidoreductase complement(984943..985533) Desulfohalobium retbaense DSM 5692 8418650 YP_003197702.1 CDS Dret_0833 NC_013223.1 985526 987373 R KEGG: dvu:DVU1951 indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; indolepyruvate ferredoxin oxidoreductase subunit alpha complement(985526..987373) Desulfohalobium retbaense DSM 5692 8418651 YP_003197703.1 CDS Dret_0834 NC_013223.1 987653 988327 R KEGG: dvm:DvMF_0611 hypothetical protein; hypothetical protein complement(987653..988327) Desulfohalobium retbaense DSM 5692 8418652 YP_003197704.1 CDS Dret_0835 NC_013223.1 988629 991757 R PFAM: acriflavin resistance protein; KEGG: dde:Dde_2381 acriflavin resistance protein D; acriflavin resistance protein complement(988629..991757) Desulfohalobium retbaense DSM 5692 8418653 YP_003197705.1 CDS Dret_0836 NC_013223.1 991904 992995 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dde:Dde_3628 secretion protein HlyD; RND family efflux transporter MFP subunit complement(991904..992995) Desulfohalobium retbaense DSM 5692 8418654 YP_003197706.1 CDS Dret_0837 NC_013223.1 993291 994721 D KEGG: dvm:DvMF_0308 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; protease Do 993291..994721 Desulfohalobium retbaense DSM 5692 8418655 YP_003197707.1 CDS Dret_0838 NC_013223.1 994942 995811 D KEGG: dde:Dde_2125 4-diphosphocytidyl-2-C-methyl-D- erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 994942..995811 Desulfohalobium retbaense DSM 5692 8418656 YP_003197708.1 CDS Dret_0839 NC_013223.1 995916 996869 D KEGG: dvm:DvMF_0487 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 995916..996869 Desulfohalobium retbaense DSM 5692 8418658 YP_003197709.1 CDS Dret_0840 NC_013223.1 996900 997541 D TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal protein L25-like; KEGG: dma:DMR_29440 50S ribosomal protein L25; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 996900..997541 Desulfohalobium retbaense DSM 5692 8418659 YP_003197710.1 CDS Dret_0841 NC_013223.1 997800 998393 D KEGG: dde:Dde_2128 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 997800..998393 Desulfohalobium retbaense DSM 5692 8418660 YP_003197711.1 CDS Dret_0842 NC_013223.1 998477 999001 D PFAM: transcription factor CarD; KEGG: dma:DMR_29460 hypothetical protein; BadM/Rrf2 family transcriptional regulator 998477..999001 Desulfohalobium retbaense DSM 5692 8418661 YP_003197712.1 CDS rho NC_013223.1 999635 1000882 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 999635..1000882 Desulfohalobium retbaense DSM 5692 8418662 YP_003197713.1 CDS Dret_0844 NC_013223.1 1001183 1002595 D PFAM: peptidase M48 Ste24p; KEGG: dvm:DvMF_0483 peptidase M48 Ste24p; peptidase M48 Ste24p 1001183..1002595 Desulfohalobium retbaense DSM 5692 8418663 YP_003197714.1 CDS Dret_0845 NC_013223.1 1002765 1003196 D TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: dde:Dde_1817 protein translocase subunit YajC; preprotein translocase subunit YajC 1002765..1003196 Desulfohalobium retbaense DSM 5692 8418664 YP_003197715.1 CDS secD NC_013223.1 1003209 1004810 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1003209..1004810 Desulfohalobium retbaense DSM 5692 8418665 YP_003197716.1 CDS Dret_0847 NC_013223.1 1004824 1005903 D TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: dde:Dde_1819 preprotein translocase subunit SecF; protein-export membrane protein SecF 1004824..1005903 Desulfohalobium retbaense DSM 5692 8418666 YP_003197717.1 CDS Dret_0848 NC_013223.1 1006143 1006325 D hypothetical protein 1006143..1006325 Desulfohalobium retbaense DSM 5692 8418667 YP_003197718.1 CDS Dret_0849 NC_013223.1 1006388 1007788 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: sfu:Sfum_3200 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 1006388..1007788 Desulfohalobium retbaense DSM 5692 8418668 YP_003197719.1 CDS glpX NC_013223.1 1007882 1008865 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(1007882..1008865) Desulfohalobium retbaense DSM 5692 8418669 YP_003197720.1 CDS Dret_0851 NC_013223.1 1008894 1010876 R TIGRFAM: transketolase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: dma:DMR_21080 transketolase; transketolase complement(1008894..1010876) Desulfohalobium retbaense DSM 5692 8418670 YP_003197721.1 CDS Dret_0852 NC_013223.1 1011038 1011490 R KEGG: dvm:DvMF_0481 sugar-phosphate isomerase, RpiB/LacA/LacB family; TIGRFAM: ribose 5-phosphate isomerase B; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; ribose 5-phosphate isomerase B complement(1011038..1011490) Desulfohalobium retbaense DSM 5692 8418671 YP_003197722.1 CDS Dret_0853 NC_013223.1 1011763 1012101 R KEGG: dvl:Dvul_1552 hypothetical protein; hypothetical protein complement(1011763..1012101) Desulfohalobium retbaense DSM 5692 8418672 YP_003197723.1 CDS Dret_0854 NC_013223.1 1012267 1012386 R hypothetical protein complement(1012267..1012386) Desulfohalobium retbaense DSM 5692 8418673 YP_003197724.1 CDS Dret_0855 NC_013223.1 1012397 1013197 R KEGG: dma:DMR_21100 hypothetical protein; hypothetical protein complement(1012397..1013197) Desulfohalobium retbaense DSM 5692 8418674 YP_003197725.1 CDS Dret_0856 NC_013223.1 1013194 1014885 R PFAM: Tetratricopeptide TPR_2 repeat protein; Tetratricopeptide TPR_4; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: dvm:DvMF_0478 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(1013194..1014885) Desulfohalobium retbaense DSM 5692 8418675 YP_003197726.1 CDS Dret_0857 NC_013223.1 1015188 1015973 R KEGG: dal:Dalk_1411 hypothetical protein; hypothetical protein complement(1015188..1015973) Desulfohalobium retbaense DSM 5692 8418676 YP_003197727.1 CDS Dret_0858 NC_013223.1 1015966 1017018 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: dma:DMR_21120 RNA polymerase sigma factor; putative RNA polymerase sigma 70 family subunit complement(1015966..1017018) Desulfohalobium retbaense DSM 5692 8418677 YP_003197728.1 CDS Dret_0859 NC_013223.1 1017227 1019641 D PFAM: homocysteine S-methyltransferase; cobalamin B12-binding domain protein; Methionine synthase B12- binding module cap domain protein; dihydropteroate synthase DHPS; KEGG: dde:Dde_2115 methionine synthase (B12- dependent); homocysteine S-methyltransferase 1017227..1019641 Desulfohalobium retbaense DSM 5692 8418678 YP_003197729.1 CDS Dret_0860 NC_013223.1 1019657 1020145 D PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dma:DMR_21140 thioredoxin-related domain protein; redoxin domain-containing protein 1019657..1020145 Desulfohalobium retbaense DSM 5692 8418679 YP_003197730.1 CDS Dret_0861 NC_013223.1 1020129 1020608 D catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate; acetyltransferase 1020129..1020608 Desulfohalobium retbaense DSM 5692 8418680 YP_003197731.1 CDS Dret_0862 NC_013223.1 1020998 1021540 D KEGG: dde:Dde_2112 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 1020998..1021540 Desulfohalobium retbaense DSM 5692 8418681 YP_003197732.1 CDS Dret_0863 NC_013223.1 1021720 1022490 D TIGRFAM: MJ0042 family finger-like protein; KEGG: dvu:DVU1589 hypothetical protein; hypothetical protein 1021720..1022490 Desulfohalobium retbaense DSM 5692 8418682 YP_003197733.1 CDS Dret_0864 NC_013223.1 1022816 1024162 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1022816..1024162 Desulfohalobium retbaense DSM 5692 8418683 YP_003197734.1 CDS Dret_0865 NC_013223.1 1024223 1024618 D KEGG: sat:SYN_02712 hypothetical protein; hypothetical protein 1024223..1024618 Desulfohalobium retbaense DSM 5692 8418684 YP_003197735.1 CDS Dret_0866 NC_013223.1 1024742 1024972 R KEGG: dde:Dde_2292 hypothetical protein; hypothetical protein complement(1024742..1024972) Desulfohalobium retbaense DSM 5692 8418685 YP_003197736.1 CDS Dret_0867 NC_013223.1 1025267 1025728 R TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dvm:DvMF_2591 transcriptional regulator, BadM/Rrf2 family; AsnC family transcriptional regulator complement(1025267..1025728) Desulfohalobium retbaense DSM 5692 8418686 YP_003197737.1 CDS Dret_0868 NC_013223.1 1025856 1027808 R KEGG: dvl:Dvul_2720 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; multi-sensor signal transduction histidine kinase complement(1025856..1027808) Desulfohalobium retbaense DSM 5692 8418687 YP_003197738.1 CDS Dret_0869 NC_013223.1 1028022 1028381 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dde:Dde_3714 response regulator receiver domain-containing protein; response regulator receiver protein complement(1028022..1028381) Desulfohalobium retbaense DSM 5692 8418688 YP_003197739.1 CDS Dret_0870 NC_013223.1 1028438 1028791 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dol:Dole_2257 response regulator receiver protein; response regulator receiver protein complement(1028438..1028791) Desulfohalobium retbaense DSM 5692 8418689 YP_003197740.1 CDS Dret_0871 NC_013223.1 1028924 1029838 R PFAM: UspA domain protein; KEGG: dol:Dole_2256 UspA domain-containing protein; UspA domain-containing protein complement(1028924..1029838) Desulfohalobium retbaense DSM 5692 8418690 YP_003197741.1 CDS Dret_0872 NC_013223.1 1029906 1031291 R PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dvm:DvMF_2593 protein of unknown function DUF224 cysteine-rich region domain protein; hypothetical protein complement(1029906..1031291) Desulfohalobium retbaense DSM 5692 8418691 YP_003197742.1 CDS Dret_0873 NC_013223.1 1031370 1032047 R KEGG: dol:Dole_2254 hmc operon protein 5; hmc operon protein 5 complement(1031370..1032047) Desulfohalobium retbaense DSM 5692 8418692 YP_003197743.1 CDS Dret_0874 NC_013223.1 1032072 1032203 R KEGG: dde:Dde_0650 hmc operon protein 4; hmc operon protein 4 complement(1032072..1032203) Desulfohalobium retbaense DSM 5692 8418693 YP_003197744.1 CDS Dret_0875 NC_013223.1 1032219 1033427 R PFAM: Polysulphide reductase NrfD; KEGG: dol:Dole_2252 polysulphide reductase NrfD; polysulfide reductase NrfD complement(1032219..1033427) Desulfohalobium retbaense DSM 5692 8418694 YP_003197745.1 CDS Dret_0876 NC_013223.1 1033428 1034486 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0652 hypothetical protein; 4Fe-4S ferredoxin complement(1033428..1034486) Desulfohalobium retbaense DSM 5692 8418695 YP_003197746.1 CDS Dret_0877 NC_013223.1 1034588 1036261 R PFAM: cytochrome c class III; KEGG: dvl:Dvul_2405 cytochrome c, class III; cytochrome c class III complement(1034588..1036261) Desulfohalobium retbaense DSM 5692 8418696 YP_003197747.1 CDS Dret_0878 NC_013223.1 1036483 1038765 R KEGG: dvm:DvMF_2548 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS/PAC sensor signal transduction histidine kinase complement(1036483..1038765) Desulfohalobium retbaense DSM 5692 8418697 YP_003197748.1 CDS Dret_0879 NC_013223.1 1039002 1039493 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dvm:DvMF_2591 transcriptional regulator, BadM/Rrf2 family; AsnC family transcriptional regulator 1039002..1039493 Desulfohalobium retbaense DSM 5692 8418698 YP_003197749.1 CDS Dret_0880 NC_013223.1 1039577 1039957 R KEGG: similar to GTPase, IMAP family member 8; hypothetical protein complement(1039577..1039957) Desulfohalobium retbaense DSM 5692 8418699 YP_003197750.1 CDS Dret_0881 NC_013223.1 1040136 1041173 D KEGG: dma:DMR_11630 lipoate-protein ligase; TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; Lipoate protein ligase-like; lipoyltransferase and lipoate-protein ligase 1040136..1041173 Desulfohalobium retbaense DSM 5692 8418700 YP_003197751.1 CDS Dret_0882 NC_013223.1 1041626 1042228 R hypothetical protein complement(1041626..1042228) Desulfohalobium retbaense DSM 5692 8418701 YP_003197752.1 CDS Dret_0883 NC_013223.1 1042349 1043749 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: sfu:Sfum_3200 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 1042349..1043749 Desulfohalobium retbaense DSM 5692 8418702 YP_003197753.1 CDS Dret_0884 NC_013223.1 1043840 1047046 R PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dde:Dde_1564 DEAD/DEAH box helicase-like; SNF2-like protein complement(1043840..1047046) Desulfohalobium retbaense DSM 5692 8418703 YP_003197754.1 CDS Dret_0885 NC_013223.1 1047613 1049814 D KEGG: dde:Dde_1569 metal dependent phosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 1047613..1049814 Desulfohalobium retbaense DSM 5692 8418704 YP_003197755.1 CDS Dret_0886 NC_013223.1 1049824 1049997 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_2749 rubredoxin; rubredoxin-type Fe(Cys)4 protein 1049824..1049997 Desulfohalobium retbaense DSM 5692 8418705 YP_003197756.1 CDS Dret_0887 NC_013223.1 1050396 1051886 D PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; GAF domain protein; Metal- dependent hydrolase HDOD; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; GAF domain protein; KEGG: scl:sce2546 putative regulatory protein; response regulator receiver modulated metal dependent phosphohydrolase 1050396..1051886 Desulfohalobium retbaense DSM 5692 8418707 YP_003197757.1 CDS Dret_0888 NC_013223.1 1052016 1052990 R KEGG: dde:Dde_1579 hypothetical protein; hypothetical protein complement(1052016..1052990) Desulfohalobium retbaense DSM 5692 8418708 YP_003197758.1 CDS Dret_0889 NC_013223.1 1053098 1053883 D KEGG: dvm:DvMF_0772 tol-pal system protein YbgF; hypothetical protein 1053098..1053883 Desulfohalobium retbaense DSM 5692 8418709 YP_003197759.1 CDS Dret_0890 NC_013223.1 1053870 1055057 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dde:Dde_1581 DNA processing protein DprA, putative; DNA protecting protein DprA 1053870..1055057 Desulfohalobium retbaense DSM 5692 8418710 YP_003197760.1 CDS Dret_0891 NC_013223.1 1055153 1056073 D PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dma:DMR_34030 tyrosine recombinase XerC; integrase family protein 1055153..1056073 Desulfohalobium retbaense DSM 5692 8418711 YP_003197761.1 CDS Dret_0892 NC_013223.1 1056191 1057312 R KEGG: dvm:DvMF_1921 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; HhH-GPD family protein; helix-hairpin-helix motif; iron-sulfur cluster loop; SMART: HhH-GPD family protein; iron-sulfur cluster loop; A/G-specific adenine glycosylase complement(1056191..1057312) Desulfohalobium retbaense DSM 5692 8418712 YP_003197762.1 CDS Dret_0893 NC_013223.1 1057398 1059080 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(1057398..1059080) Desulfohalobium retbaense DSM 5692 8418713 YP_003197763.1 CDS Dret_0894 NC_013223.1 1059625 1060446 D KEGG: dvm:DvMF_0164 hypothetical protein; hypothetical protein 1059625..1060446 Desulfohalobium retbaense DSM 5692 8418714 YP_003197764.1 CDS Dret_0895 NC_013223.1 1060508 1062643 D PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: dvm:DvMF_0166 formate dehydrogenase; nitrate reductase 1060508..1062643 Desulfohalobium retbaense DSM 5692 8418715 YP_003197765.1 CDS Dret_0896 NC_013223.1 1062732 1063286 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_0165 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1062732..1063286 Desulfohalobium retbaense DSM 5692 8418716 YP_003197766.1 CDS Dret_0897 NC_013223.1 1063432 1063611 R hypothetical protein complement(1063432..1063611) Desulfohalobium retbaense DSM 5692 8418717 YP_003197767.1 CDS Dret_0898 NC_013223.1 1063726 1065039 R PFAM: UMUC domain protein DNA-repair protein; KEGG: dma:DMR_28930 UmuC protein; DNA-directed DNA polymerase complement(1063726..1065039) Desulfohalobium retbaense DSM 5692 8418718 YP_003197768.1 CDS Dret_0899 NC_013223.1 1065051 1065497 R PFAM: Peptidase S24, S26A and S26B, conserved region; KEGG: dvl:Dvul_0458 putative prophage repressor; Peptidase S24, S26A and S26B, conserved region complement(1065051..1065497) Desulfohalobium retbaense DSM 5692 8418719 YP_003197769.1 CDS Dret_0900 NC_013223.1 1065676 1067517 D PFAM: glycoside hydrolase 15-related; KEGG: noc:Noc_1617 glycoside hydrolase; glycoside hydrolase 15-related 1065676..1067517 Desulfohalobium retbaense DSM 5692 8418720 YP_003197770.1 CDS Dret_0901 NC_013223.1 1067836 1068018 D KEGG: sfu:Sfum_1387 hypothetical protein; hypothetical protein 1067836..1068018 Desulfohalobium retbaense DSM 5692 8418721 YP_003197771.1 CDS Dret_0902 NC_013223.1 1068053 1069471 R KEGG: pfl:PFL_2863 signaling repeat/GGDEF domain/EAL domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase/phosphodiesterase complement(1068053..1069471) Desulfohalobium retbaense DSM 5692 8418722 YP_003197772.1 CDS Dret_0903 NC_013223.1 1069723 1070619 R PFAM: zinc/iron permease; KEGG: dal:Dalk_3018 zinc transporter ZupT; zinc transporter ZupT complement(1069723..1070619) Desulfohalobium retbaense DSM 5692 8418723 YP_003197773.1 CDS Dret_0904 NC_013223.1 1070963 1072204 D PFAM: sodium/hydrogen exchanger; KEGG: slo:Shew_3217 sodium/hydrogen exchanger; sodium/hydrogen exchanger 1070963..1072204 Desulfohalobium retbaense DSM 5692 8418724 YP_003197774.1 CDS Dret_0905 NC_013223.1 1072405 1073256 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dol:Dole_2763 substrate-binding region of ABC- type glycine betaine transport system; glycine/betaine ABC transporter substrate-binding protein 1072405..1073256 Desulfohalobium retbaense DSM 5692 8418725 YP_003197775.1 CDS Dret_0906 NC_013223.1 1073783 1075948 D KEGG: nmu:Nmul_A1401 glycogen debranching protein GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 1073783..1075948 Desulfohalobium retbaense DSM 5692 8418726 YP_003197776.1 CDS Dret_0907 NC_013223.1 1076441 1077625 D PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: dvu:DVU0442 PhoH-related protein; PhoH family protein 1076441..1077625 Desulfohalobium retbaense DSM 5692 8418727 YP_003197777.1 CDS Dret_0908 NC_013223.1 1078622 1079035 D PFAM: ROSMUCR transcriptional regulator; KEGG: dde:Dde_0303 MucR family transcriptional regulator; MucR family transcriptional regulator 1078622..1079035 Desulfohalobium retbaense DSM 5692 8418728 YP_003197778.1 CDS Dret_0909 NC_013223.1 1079185 1079598 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: vha:VIBHAR_02199 hypothetical protein; cupin 2 barrel domain-containing protein 1079185..1079598 Desulfohalobium retbaense DSM 5692 8418729 YP_003197779.1 CDS Dret_0910 NC_013223.1 1080343 1081080 D PFAM: regulatory protein IclR; KEGG: atc:AGR_L_119 hypothetical protein; transcriptional regulator, IclR family 1080343..1081080 Desulfohalobium retbaense DSM 5692 8418730 YP_003197780.1 CDS Dret_0911 NC_013223.1 1081166 1082695 D TIGRFAM: choline-sulfatase; PFAM: sulfatase; KEGG: bmj:BMULJ_04947 choline-sulfatase; choline-sulfatase 1081166..1082695 Desulfohalobium retbaense DSM 5692 8418731 YP_003197781.1 CDS Dret_0912 NC_013223.1 1082750 1083853 D PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_2157 radical SAM domain protein; radical SAM protein 1082750..1083853 Desulfohalobium retbaense DSM 5692 8418732 YP_003197782.1 CDS Dret_0913 NC_013223.1 1084027 1085478 D TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; HI0933 family protein; KEGG: sfr:Sfri_0511 flavocytochrome c; flavocytochrome c 1084027..1085478 Desulfohalobium retbaense DSM 5692 8418733 YP_003197783.1 CDS Dret_0914 NC_013223.1 1085504 1086028 R TIGRFAM: TonB family protein; KEGG: dvl:Dvul_0505 TonB family protein; TonB family protein complement(1085504..1086028) Desulfohalobium retbaense DSM 5692 8418734 YP_003197784.1 CDS Dret_0915 NC_013223.1 1086032 1086454 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dvl:Dvul_0506 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(1086032..1086454) Desulfohalobium retbaense DSM 5692 8418735 YP_003197785.1 CDS Dret_0916 NC_013223.1 1086451 1087053 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: dvl:Dvul_0507 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(1086451..1087053) Desulfohalobium retbaense DSM 5692 8418736 YP_003197786.1 CDS Dret_0917 NC_013223.1 1087148 1088992 R PFAM: cobalamin synthesis protein P47K; KEGG: sfu:Sfum_3612 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K complement(1087148..1088992) Desulfohalobium retbaense DSM 5692 8418737 YP_003197787.1 CDS Dret_0918 NC_013223.1 1089222 1090376 R KEGG: sfu:Sfum_3609 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein complement(1089222..1090376) Desulfohalobium retbaense DSM 5692 8418738 YP_003197788.1 CDS Dret_0919 NC_013223.1 1090397 1091815 R KEGG: sfu:Sfum_3608 hypothetical protein; hypothetical protein complement(1090397..1091815) Desulfohalobium retbaense DSM 5692 8418739 YP_003197789.1 CDS Dret_0920 NC_013223.1 1091912 1092166 R hypothetical protein complement(1091912..1092166) Desulfohalobium retbaense DSM 5692 8418740 YP_003197790.1 CDS Dret_0921 NC_013223.1 1092163 1092927 R PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dvl:Dvul_0512 regulatory protein GntR, HTH; GntR family transcriptional regulator complement(1092163..1092927) Desulfohalobium retbaense DSM 5692 8418741 YP_003197791.1 CDS Dret_0922 NC_013223.1 1093262 1094566 R KEGG: dde:Dde_1612 hypothetical protein; hypothetical protein complement(1093262..1094566) Desulfohalobium retbaense DSM 5692 8418742 YP_003197792.1 CDS Dret_0923 NC_013223.1 1094910 1095740 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: plu:plu2765 hypothetical protein; hypothetical protein complement(1094910..1095740) Desulfohalobium retbaense DSM 5692 8418743 YP_003197793.1 CDS Dret_0924 NC_013223.1 1096169 1096519 D hypothetical protein 1096169..1096519 Desulfohalobium retbaense DSM 5692 8418744 YP_003197794.1 CDS Dret_0925 NC_013223.1 1096551 1096754 D KEGG: pin:Ping_3147 hypothetical protein; hypothetical protein 1096551..1096754 Desulfohalobium retbaense DSM 5692 8418745 YP_003197795.1 CDS Dret_0926 NC_013223.1 1096765 1097064 D hypothetical protein 1096765..1097064 Desulfohalobium retbaense DSM 5692 8418746 YP_003197796.1 CDS Dret_0927 NC_013223.1 1097508 1097849 D KEGG: dma:DMR_41530 putative transposase orf1 for insertion sequence element; putative transposase orf1 for insertion sequence element 1097508..1097849 Desulfohalobium retbaense DSM 5692 8418747 YP_003197797.1 CDS Dret_0928 NC_013223.1 1097846 1098199 D PFAM: IS66 Orf2 family protein; KEGG: dat:HRM2_43710 transposase; IS66 Orf2 family protein 1097846..1098199 Desulfohalobium retbaense DSM 5692 8418748 YP_003197798.1 CDS Dret_0929 NC_013223.1 1098249 1099799 D PFAM: transposase IS66; KEGG: dma:DMR_41410 putative transposase orf3 for insertion sequence element; transposase IS66 1098249..1099799 Desulfohalobium retbaense DSM 5692 8418749 YP_003197799.1 CDS Dret_0930 NC_013223.1 1100795 1103005 R KEGG: dal:Dalk_0107 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS/PAC sensor hybrid histidine kinase complement(1100795..1103005) Desulfohalobium retbaense DSM 5692 8418750 YP_003197800.1 CDS Dret_0931 NC_013223.1 1103056 1103541 R KEGG: dol:Dole_1521 hypothetical protein; hypothetical protein complement(1103056..1103541) Desulfohalobium retbaense DSM 5692 8418751 YP_003197801.1 CDS Dret_0932 NC_013223.1 1103610 1104107 R PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: sat:SYN_00975 chemotaxis protein; CheW protein complement(1103610..1104107) Desulfohalobium retbaense DSM 5692 8418752 YP_003197802.1 CDS Dret_0933 NC_013223.1 1104222 1106564 R PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_0574 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1104222..1106564) Desulfohalobium retbaense DSM 5692 8418753 YP_003197803.1 CDS Dret_0934 NC_013223.1 1107118 1108503 R PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dol:Dole_3262 two component, sigma54 specific, Fis family transcriptional regulator; putative two component, sigma54 specific, transcriptional regulator, Fis family complement(1107118..1108503) Desulfohalobium retbaense DSM 5692 8418754 YP_003197804.1 CDS Dret_0935 NC_013223.1 1108868 1110100 D PFAM: histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_0300 putative sensor with HAMP domain; putative sensor 1108868..1110100 Desulfohalobium retbaense DSM 5692 8418755 YP_003197805.1 CDS Dret_0936 NC_013223.1 1110149 1112560 D KEGG: dat:HRM2_15700 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 1110149..1112560 Desulfohalobium retbaense DSM 5692 8418756 YP_003197806.1 CDS Dret_0940 NC_013223.1 1114195 1114662 D KEGG: aav:Aave_3971 hypothetical protein; hypothetical protein 1114195..1114662 Desulfohalobium retbaense DSM 5692 8418760 YP_003197807.1 CDS Dret_0941 NC_013223.1 1114742 1114948 D hypothetical protein 1114742..1114948 Desulfohalobium retbaense DSM 5692 8418761 YP_003197808.1 CDS Dret_0942 NC_013223.1 1114987 1115835 R PFAM: GntR domain protein; KEGG: dat:HRM2_28260 hypothetical protein; GntR family transcriptional regulator complement(1114987..1115835) Desulfohalobium retbaense DSM 5692 8418762 YP_003197809.1 CDS Dret_0943 NC_013223.1 1116226 1116450 D hypothetical protein 1116226..1116450 Desulfohalobium retbaense DSM 5692 8418763 YP_003197810.1 CDS Dret_0944 NC_013223.1 1116488 1117654 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: dat:HRM2_08540 transporter Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 1116488..1117654 Desulfohalobium retbaense DSM 5692 8418764 YP_003197811.1 CDS Dret_0945 NC_013223.1 1118363 1119163 D hypothetical protein 1118363..1119163 Desulfohalobium retbaense DSM 5692 8418765 YP_003197812.1 CDS Dret_0946 NC_013223.1 1119359 1120582 R PFAM: glucose sorbosone dehydrogenase; KEGG: dat:HRM2_43850 glucose/sorbosone dehydrogenase; glucose sorbosone dehydrogenase complement(1119359..1120582) Desulfohalobium retbaense DSM 5692 8418766 YP_003197813.1 CDS Dret_0947 NC_013223.1 1120964 1121545 R KEGG: sat:SYN_02350 hypothetical protein; hypothetical protein complement(1120964..1121545) Desulfohalobium retbaense DSM 5692 8418767 YP_003197814.1 CDS Dret_0948 NC_013223.1 1121608 1123080 R PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: dol:Dole_0431 bilirubin oxidase; multicopper oxidase type 3 complement(1121608..1123080) Desulfohalobium retbaense DSM 5692 8418768 YP_003197815.1 CDS Dret_0949 NC_013223.1 1123535 1124266 R KEGG: bja:bll2566 hypothetical protein; hypothetical protein complement(1123535..1124266) Desulfohalobium retbaense DSM 5692 8418769 YP_003197816.1 CDS Dret_0950 NC_013223.1 1124285 1124746 R KEGG: ank:AnaeK_1209 hypothetical protein; hypothetical protein complement(1124285..1124746) Desulfohalobium retbaense DSM 5692 8418770 YP_003197817.1 CDS Dret_0951 NC_013223.1 1124918 1125397 R PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: afr:AFE_2509 transcriptional regulator, MerR family; transcriptional regulator, MerR family complement(1124918..1125397) Desulfohalobium retbaense DSM 5692 8418771 YP_003197818.1 CDS Dret_0952 NC_013223.1 1125631 1126944 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gur:Gura_3588 radical SAM domain-containing protein; radical SAM protein 1125631..1126944 Desulfohalobium retbaense DSM 5692 8418772 YP_003197819.1 CDS arsM NC_013223.1 1127092 1127889 D in Rhodopseudomonas palustris this protein confers resistance to arsenite; catalyzes the formation of a number of methylated intermediates from arsenite and SAM producing trimethylarsine; arsenite S-adenosylmethyltransferase 1127092..1127889 Desulfohalobium retbaense DSM 5692 8418773 YP_003197820.1 CDS Dret_0954 NC_013223.1 1128018 1129418 R KEGG: dat:HRM2_19930 hypothetical protein; hypothetical protein complement(1128018..1129418) Desulfohalobium retbaense DSM 5692 8418774 YP_003197821.1 CDS Dret_0955 NC_013223.1 1129878 1130297 R hypothetical protein complement(1129878..1130297) Desulfohalobium retbaense DSM 5692 8418775 YP_003197822.1 CDS Dret_0956 NC_013223.1 1130294 1130836 R KEGG: bur:Bcep18194_B0172 hypothetical protein; hypothetical protein complement(1130294..1130836) Desulfohalobium retbaense DSM 5692 8418776 YP_003197823.1 CDS Dret_0957 NC_013223.1 1130854 1131258 R KEGG: fph:Fphi_1301 hypothetical protein; hypothetical protein complement(1130854..1131258) Desulfohalobium retbaense DSM 5692 8418777 YP_003197824.1 CDS Dret_0958 NC_013223.1 1132174 1132815 R PFAM: protein of unknown function DUF1121; KEGG: dde:Dde_2335 hypothetical protein; hypothetical protein complement(1132174..1132815) Desulfohalobium retbaense DSM 5692 8418778 YP_003197825.1 CDS Dret_0959 NC_013223.1 1132805 1133080 R KEGG: dds:Ddes_0329 transcriptional regulator, XRE family; hypothetical protein complement(1132805..1133080) Desulfohalobium retbaense DSM 5692 8418779 YP_003197826.1 CDS Dret_0960 NC_013223.1 1133181 1133510 D hypothetical protein 1133181..1133510 Desulfohalobium retbaense DSM 5692 8418780 YP_003197827.1 CDS Dret_0961 NC_013223.1 1133965 1134963 D KEGG: ajs:Ajs_3614 phage integrase family protein; hypothetical protein 1133965..1134963 Desulfohalobium retbaense DSM 5692 8418781 YP_003197828.1 CDS Dret_0962 NC_013223.1 1135314 1136429 D PFAM: integrase family protein; KEGG: dma:DMR_36050 phage integrase family protein; integrase family protein 1135314..1136429 Desulfohalobium retbaense DSM 5692 8418782 YP_003197829.1 CDS Dret_0963 NC_013223.1 1136414 1137814 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: sfu:Sfum_3200 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase complement(1136414..1137814) Desulfohalobium retbaense DSM 5692 8418783 YP_003197830.1 CDS Dret_0964 NC_013223.1 1137877 1138059 R hypothetical protein complement(1137877..1138059) Desulfohalobium retbaense DSM 5692 8418784 YP_003197831.1 CDS Dret_0965 NC_013223.1 1138547 1139827 R KEGG: dvl:Dvul_2740 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl- tRNA synthetase, class IIa-like; seryl-tRNA synthetase complement(1138547..1139827) Desulfohalobium retbaense DSM 5692 8418787 YP_003197832.1 CDS Dret_0966 NC_013223.1 1140122 1141603 R PFAM: Uncharacterised protein family UPF0324; KEGG: noc:Noc_1683 hypothetical protein; hypothetical protein complement(1140122..1141603) Desulfohalobium retbaense DSM 5692 8418788 YP_003197833.1 CDS Dret_0967 NC_013223.1 1141625 1141870 R KEGG: nmu:Nmul_A2602 hypothetical protein; hypothetical protein complement(1141625..1141870) Desulfohalobium retbaense DSM 5692 8418789 YP_003197834.1 CDS Dret_0968 NC_013223.1 1141884 1142060 R hypothetical protein complement(1141884..1142060) Desulfohalobium retbaense DSM 5692 8418790 YP_003197835.1 CDS Dret_0969 NC_013223.1 1142330 1144735 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase; histidine kinase 1142330..1144735 Desulfohalobium retbaense DSM 5692 8418791 YP_003197836.1 CDS Dret_0970 NC_013223.1 1144970 1146391 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dvu:DVU0539 sigma-54 dependent DNA-binding response regulator; two component, sigma54 specific, transcriptional regulator, Fis family 1144970..1146391 Desulfohalobium retbaense DSM 5692 8418792 YP_003197837.1 CDS Dret_0971 NC_013223.1 1146406 1146888 D PFAM: CinA domain protein; KEGG: hypothetical protein; CinA domain-containing protein 1146406..1146888 Desulfohalobium retbaense DSM 5692 8418793 YP_003197838.1 CDS Dret_0972 NC_013223.1 1147054 1147791 D hypothetical protein 1147054..1147791 Desulfohalobium retbaense DSM 5692 8418794 YP_003197839.1 CDS Dret_0973 NC_013223.1 1147873 1148457 D TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: dma:DMR_39270 2'-5' RNA ligase; 2'-5' RNA ligase 1147873..1148457 Desulfohalobium retbaense DSM 5692 8418795 YP_003197840.1 CDS Dret_0974 NC_013223.1 1149103 1149804 R PFAM: protein of unknown function DUF1614; KEGG: sfu:Sfum_0878 protein of unknown function DUF1614; hypothetical protein complement(1149103..1149804) Desulfohalobium retbaense DSM 5692 8418796 YP_003197841.1 CDS Dret_0975 NC_013223.1 1149933 1151690 D PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: dma:DMR_20910 putative ABC transporter; ABC transporter 1149933..1151690 Desulfohalobium retbaense DSM 5692 8418797 YP_003197842.1 CDS Dret_0976 NC_013223.1 1151918 1152154 D KEGG: dvm:DvMF_2255 hypothetical protein; hypothetical protein 1151918..1152154 Desulfohalobium retbaense DSM 5692 8418798 YP_003197843.1 CDS Dret_0977 NC_013223.1 1152234 1153244 R PFAM: glycosyl transferase family 9; KEGG: dvu:DVU1956 heptosyltransferase family protein; glycosyl transferase family protein complement(1152234..1153244) Desulfohalobium retbaense DSM 5692 8418799 YP_003197844.1 CDS Dret_0978 NC_013223.1 1153241 1154377 R PFAM: glycosyl transferase group 1; KEGG: gur:Gura_3800 glycosyl transferase, group 1; group 1 glycosyl transferase complement(1153241..1154377) Desulfohalobium retbaense DSM 5692 8418800 YP_003197845.1 CDS Dret_0979 NC_013223.1 1154517 1155212 R TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: dvm:DvMF_3135 histidinol-phosphate phosphatase family protein; histidinol-phosphate phosphatase family protein complement(1154517..1155212) Desulfohalobium retbaense DSM 5692 8418801 YP_003197846.1 CDS Dret_0980 NC_013223.1 1155390 1156439 D PFAM: protein of unknown function DUF21; CBS domain containing protein; KEGG: dma:DMR_22520 hypothetical protein; hypothetical protein 1155390..1156439 Desulfohalobium retbaense DSM 5692 8418802 YP_003197847.1 CDS Dret_0981 NC_013223.1 1156473 1156889 D KEGG: dde:Dde_1478 cytochrome c-type biogenesis protein CcmE; cytochrome c-type biogenesis protein CcmE 1156473..1156889 Desulfohalobium retbaense DSM 5692 8418803 YP_003197848.1 CDS Dret_0982 NC_013223.1 1157154 1159055 D PFAM: cytochrome c assembly protein; KEGG: dma:DMR_22500 cytochrome c-type biogenesis protein CcmF; cytochrome c assembly protein 1157154..1159055 Desulfohalobium retbaense DSM 5692 8418804 YP_003197849.1 CDS Dret_0983 NC_013223.1 1159052 1159714 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1476 ATPase; ABC transporter 1159052..1159714 Desulfohalobium retbaense DSM 5692 8418805 YP_003197850.1 CDS Dret_0984 NC_013223.1 1159707 1160381 D PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dvm:DvMF_3130 cytochrome c-type biogenesis protein CcmB; cytochrome c-type biogenesis protein CcmB 1159707..1160381 Desulfohalobium retbaense DSM 5692 8418806 YP_003197851.1 CDS Dret_0985 NC_013223.1 1160408 1161112 D PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1474 cytochrome c-type biogenesis protein CcmC; cytochrome c assembly protein 1160408..1161112 Desulfohalobium retbaense DSM 5692 8418807 YP_003197852.1 CDS Dret_0986 NC_013223.1 1161290 1161442 D hypothetical protein 1161290..1161442 Desulfohalobium retbaense DSM 5692 8418808 YP_003197853.1 CDS Dret_0987 NC_013223.1 1161432 1161995 D PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: dde:Dde_1473 TPR repeat-containing protein; hypothetical protein 1161432..1161995 Desulfohalobium retbaense DSM 5692 8418809 YP_003197854.1 CDS Dret_0988 NC_013223.1 1162006 1163463 D KEGG: dma:DMR_22400 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; SMART: CBS domain containing protein; inosine-5'-monophosphate dehydrogenase 1162006..1163463 Desulfohalobium retbaense DSM 5692 8418810 YP_003197855.1 CDS guaA NC_013223.1 1163563 1165110 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1163563..1165110 Desulfohalobium retbaense DSM 5692 8418811 YP_003197856.1 CDS Dret_0990 NC_013223.1 1165451 1165873 D TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dma:DMR_22380 sec-independent protein translocase protein TatB; twin-arginine translocation protein subunit TatB 1165451..1165873 Desulfohalobium retbaense DSM 5692 8418812 YP_003197857.1 CDS Dret_0991 NC_013223.1 1165870 1166844 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: dvm:DvMF_3123 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC 1165870..1166844 Desulfohalobium retbaense DSM 5692 8418813 YP_003197858.1 CDS Dret_0992 NC_013223.1 1166825 1167406 D PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: dma:DMR_22370 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 1166825..1167406 Desulfohalobium retbaense DSM 5692 8418814 YP_003197859.1 CDS Dret_0993 NC_013223.1 1167418 1168053 D KEGG: dde:Dde_1466 putative lipoprotein; putative lipoprotein 1167418..1168053 Desulfohalobium retbaense DSM 5692 8418815 YP_003197860.1 CDS Dret_0994 NC_013223.1 1168050 1168781 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1168050..1168781 Desulfohalobium retbaense DSM 5692 8418816 YP_003197861.1 CDS Dret_0995 NC_013223.1 1168890 1169087 D PFAM: Heavy metal transport/detoxification protein; KEGG: sfu:Sfum_3224 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 1168890..1169087 Desulfohalobium retbaense DSM 5692 8418817 YP_003197862.1 CDS Dret_0996 NC_013223.1 1169307 1170542 R TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: dat:HRM2_05320 UraA; uracil-xanthine permease complement(1169307..1170542) Desulfohalobium retbaense DSM 5692 8418818 YP_003197863.1 CDS Dret_0997 NC_013223.1 1170664 1171290 R TIGRFAM: uracil phosphoribosyltransferase; KEGG: dat:HRM2_05330 Upp; uracil phosphoribosyltransferase complement(1170664..1171290) Desulfohalobium retbaense DSM 5692 8418819 YP_003197864.1 CDS Dret_0998 NC_013223.1 1171384 1173027 D TIGRFAM: pseudouridine synthase, RluA family; dephospho-CoA kinase; PFAM: pseudouridine synthase; Dephospho-CoA kinase; RNA-binding S4 domain protein; KEGG: dma:DMR_23610 ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase; RluA family pseudouridine synthase 1171384..1173027 Desulfohalobium retbaense DSM 5692 8418820 YP_003197865.1 CDS Dret_0999 NC_013223.1 1173270 1174013 D PFAM: Rhomboid family protein; KEGG: dvm:DvMF_0913 rhomboid family protein; rhomboid family protein 1173270..1174013 Desulfohalobium retbaense DSM 5692 8418821 YP_003197866.1 CDS Dret_1000 NC_013223.1 1174184 1174942 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvm:DvMF_0914 ABC transporter related; ABC transporter 1174184..1174942 Desulfohalobium retbaense DSM 5692 8418822 YP_003197867.1 CDS Dret_1001 NC_013223.1 1174962 1176134 D PFAM: SufBD protein; KEGG: dma:DMR_23420 SufBD family protein; SufBD protein 1174962..1176134 Desulfohalobium retbaense DSM 5692 8418823 YP_003197868.1 CDS Dret_1002 NC_013223.1 1176444 1177670 D PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1176444..1177670 Desulfohalobium retbaense DSM 5692 8418824 YP_003197869.1 CDS Dret_1003 NC_013223.1 1177839 1178732 R PFAM: Integrase catalytic region; KEGG: dma:DMR_40700 putative transposase orfB; integrase catalytic subunit complement(1177839..1178732) Desulfohalobium retbaense DSM 5692 8418825 YP_003197870.1 CDS Dret_1004 NC_013223.1 1178729 1179112 R KEGG: dma:DMR_36590 putative transposase; hypothetical protein complement(1178729..1179112) Desulfohalobium retbaense DSM 5692 8418826 YP_003197871.1 CDS Dret_1005 NC_013223.1 1179205 1179654 D KEGG: dvm:DvMF_3045 hypothetical protein; hypothetical protein 1179205..1179654 Desulfohalobium retbaense DSM 5692 8418827 YP_003197872.1 CDS Dret_1006 NC_013223.1 1179686 1180156 R PFAM: protein of unknown function UPF0153; KEGG: dds:Ddes_0986 protein of unknown function UPF0153; hypothetical protein complement(1179686..1180156) Desulfohalobium retbaense DSM 5692 8418828 YP_003197873.1 CDS Dret_1007 NC_013223.1 1180590 1181699 D PFAM: Radical SAM domain protein; KEGG: dma:DMR_21460 hypothetical protein; radical SAM protein 1180590..1181699 Desulfohalobium retbaense DSM 5692 8418829 YP_003197874.1 CDS Dret_1008 NC_013223.1 1181772 1182998 D PFAM: peptidase M24; creatinase; KEGG: dvu:DVU1000 M24 family peptidase; peptidase M24 1181772..1182998 Desulfohalobium retbaense DSM 5692 8418830 YP_003197875.1 CDS Dret_1009 NC_013223.1 1184079 1185788 D PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; SMART: chemotaxis sensory transducer; KEGG: dat:HRM2_16990 McpA3; methyl-accepting chemotaxis sensory transducer with Cache sensor 1184079..1185788 Desulfohalobium retbaense DSM 5692 8418832 YP_003197876.1 CDS Dret_1010 NC_013223.1 1185938 1188115 R PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: dat:HRM2_42990 PpsA8; pyruvate phosphate dikinase PEP/pyruvate- binding protein complement(1185938..1188115) Desulfohalobium retbaense DSM 5692 8418833 YP_003197877.1 CDS Dret_1011 NC_013223.1 1188766 1190676 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_0431 putative ATP-binding component of a transport system; ABC transporter 1188766..1190676 Desulfohalobium retbaense DSM 5692 8418834 YP_003197878.1 CDS Dret_1012 NC_013223.1 1190680 1191528 D KEGG: dvm:DvMF_2942 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase; pantoate/beta-alanine ligase 1190680..1191528 Desulfohalobium retbaense DSM 5692 8418835 YP_003197879.1 CDS Dret_1013 NC_013223.1 1191531 1191911 D KEGG: tgr:Tgr7_0877 aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; aspartate 1-decarboxylase 1191531..1191911 Desulfohalobium retbaense DSM 5692 8418836 YP_003197880.1 CDS Dret_1014 NC_013223.1 1191896 1192747 D KEGG: dde:Dde_1500 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1191896..1192747 Desulfohalobium retbaense DSM 5692 8418837 YP_003197881.1 CDS Dret_1015 NC_013223.1 1193141 1193899 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pca:Pcar_0791 putative DNA replication factor; IstB domain-containing protein ATP-binding protein complement(1193141..1193899) Desulfohalobium retbaense DSM 5692 8418838 YP_003197882.1 CDS Dret_1016 NC_013223.1 1193896 1195395 R KEGG: dat:HRM2_39510 IstA2; IstA2 complement(1193896..1195395) Desulfohalobium retbaense DSM 5692 8418839 YP_003197883.1 CDS Dret_1017 NC_013223.1 1196154 1197641 D hypothetical protein 1196154..1197641 Desulfohalobium retbaense DSM 5692 8418840 YP_003197884.1 CDS Dret_1018 NC_013223.1 1197807 1199780 D KEGG: gbm:Gbem_2047 type IV pilus assembly PilZ; hypothetical protein 1197807..1199780 Desulfohalobium retbaense DSM 5692 8418841 YP_003197885.1 CDS Dret_1019 NC_013223.1 1199963 1201870 D PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; SMART: metal-dependent phosphohydrolase HD region; GAF domain protein; KEGG: gbm:Gbem_2046 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1199963..1201870 Desulfohalobium retbaense DSM 5692 8418842 YP_003197886.1 CDS Dret_1020 NC_013223.1 1202103 1202924 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ppd:Ppro_1409 methyltransferase type 12; type 11 methyltransferase complement(1202103..1202924) Desulfohalobium retbaense DSM 5692 8418843 YP_003197887.1 CDS Dret_1021 NC_013223.1 1203378 1204418 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: dma:DMR_32970 cation efflux family protein; cation diffusion facilitator family transporter 1203378..1204418 Desulfohalobium retbaense DSM 5692 8418844 YP_003197888.1 CDS Dret_1022 NC_013223.1 1204599 1205660 R PFAM: Protein of unknown function DUF2219; KEGG: dvm:DvMF_0587 hypothetical protein; hypothetical protein complement(1204599..1205660) Desulfohalobium retbaense DSM 5692 8418845 YP_003197889.1 CDS Dret_1023 NC_013223.1 1205787 1206434 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dma:DMR_15950 putative hydrolase; HAD-superfamily hydrolase 1205787..1206434 Desulfohalobium retbaense DSM 5692 8418846 YP_003197890.1 CDS Dret_1024 NC_013223.1 1206553 1207377 R PFAM: band 7 protein; SMART: band 7 protein; KEGG: dma:DMR_00100 hypothetical protein; hypothetical protein complement(1206553..1207377) Desulfohalobium retbaense DSM 5692 8418847 YP_003197891.1 CDS Dret_1025 NC_013223.1 1207370 1208731 R PFAM: protein of unknown function DUF107; KEGG: dma:DMR_00090 hypothetical membrane protein; hypothetical protein complement(1207370..1208731) Desulfohalobium retbaense DSM 5692 8418848 YP_003197892.1 CDS Dret_1026 NC_013223.1 1208964 1209143 D hypothetical protein 1208964..1209143 Desulfohalobium retbaense DSM 5692 8418849 YP_003197893.1 CDS Dret_1027 NC_013223.1 1209131 1209511 R PFAM: cytochrome c class III; KEGG: dvl:Dvul_2715 acidic cytochrome c3; cytochrome c class III complement(1209131..1209511) Desulfohalobium retbaense DSM 5692 8418850 YP_003197894.1 CDS Dret_1028 NC_013223.1 1209531 1210886 R PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2714 hypothetical protein; hypothetical protein complement(1209531..1210886) Desulfohalobium retbaense DSM 5692 8418851 YP_003197895.1 CDS Dret_1029 NC_013223.1 1210910 1211569 R KEGG: dol:Dole_0303 hypothetical protein; hypothetical protein complement(1210910..1211569) Desulfohalobium retbaense DSM 5692 8418852 YP_003197896.1 CDS Dret_1030 NC_013223.1 1211624 1212883 R KEGG: dol:Dole_0304 hypothetical protein; hypothetical protein complement(1211624..1212883) Desulfohalobium retbaense DSM 5692 8418853 YP_003197897.1 CDS Dret_1031 NC_013223.1 1213128 1215281 R PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dat:HRM2_28330 HdrD3; hypothetical protein complement(1213128..1215281) Desulfohalobium retbaense DSM 5692 8418854 YP_003197898.1 CDS Dret_1032 NC_013223.1 1215268 1215912 R PFAM: protein of unknown function DUF162; KEGG: dvl:Dvul_0341 hypothetical protein; hypothetical protein complement(1215268..1215912) Desulfohalobium retbaense DSM 5692 8418855 YP_003197899.1 CDS Dret_1033 NC_013223.1 1216265 1217332 R PFAM: DRTGG domain protein; KEGG: dde:Dde_1705 cobyrinic acid a,c-diamide synthase family protein; DRTGG domain-containing protein complement(1216265..1217332) Desulfohalobium retbaense DSM 5692 8418856 YP_003197900.1 CDS Dret_1034 NC_013223.1 1217503 1218711 R TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: dvl:Dvul_0343 acetate kinase; acetate kinase complement(1217503..1218711) Desulfohalobium retbaense DSM 5692 8418857 YP_003197901.1 CDS Dret_1035 NC_013223.1 1218708 1220816 R catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase complement(1218708..1220816) Desulfohalobium retbaense DSM 5692 8418858 YP_003197902.1 CDS Dret_1036 NC_013223.1 1220995 1224651 R TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; pyruvate ferredoxin/flavodoxin oxidoreductase complement(1220995..1224651) Desulfohalobium retbaense DSM 5692 8418859 YP_003197903.1 CDS Dret_1037 NC_013223.1 1224904 1226202 R PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_1863 protein of unknown function DUF224 cysteine-rich region domain protein; hypothetical protein complement(1224904..1226202) Desulfohalobium retbaense DSM 5692 8418860 YP_003197904.1 CDS Dret_1038 NC_013223.1 1226205 1227590 R PFAM: FAD linked oxidase domain protein; KEGG: dde:Dde_3239 glycolate oxidase, subunit GlcD; FAD linked oxidase domain-containing protein complement(1226205..1227590) Desulfohalobium retbaense DSM 5692 8418861 YP_003197905.1 CDS Dret_1039 NC_013223.1 1227771 1229477 R TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dde:Dde_3238 L-lactate transport; L-lactate transport complement(1227771..1229477) Desulfohalobium retbaense DSM 5692 8418862 YP_003197906.1 CDS Dret_1040 NC_013223.1 1229891 1230361 R PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dat:HRM2_38070 transcriptional regulator (MarR family protein); transcriptional regulator, MarR family complement(1229891..1230361) Desulfohalobium retbaense DSM 5692 8418863 YP_003197907.1 CDS Dret_1041 NC_013223.1 1230470 1231516 R TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: gsu:GSU1399 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA complement(1230470..1231516) Desulfohalobium retbaense DSM 5692 8418864 YP_003197908.1 CDS Dret_1042 NC_013223.1 1231971 1232681 R PFAM: SNARE associated Golgi protein; KEGG: dal:Dalk_3002 SNARE associated Golgi protein; hypothetical protein complement(1231971..1232681) Desulfohalobium retbaense DSM 5692 8418865 YP_003197909.1 CDS Dret_1043 NC_013223.1 1232824 1233342 R SMART: Water Stress and Hypersensitive response domain protein; KEGG: dal:Dalk_0831 water stress and hypersensitive response domain protein; Water Stress and Hypersensitive response domain-containing protein complement(1232824..1233342) Desulfohalobium retbaense DSM 5692 8418866 YP_003197910.1 CDS Dret_1044 NC_013223.1 1233687 1235411 R TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: dat:HRM2_05150 Na / phosphate-cotransporter family protein; Na/Pi-cotransporter II-like protein complement(1233687..1235411) Desulfohalobium retbaense DSM 5692 8418867 YP_003197911.1 CDS Dret_1045 NC_013223.1 1236007 1236126 R hypothetical protein complement(1236007..1236126) Desulfohalobium retbaense DSM 5692 8418869 YP_003197912.1 CDS Dret_1046 NC_013223.1 1236227 1237567 D TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: abo:ABO_0256 7,8-diaminononanoate transaminase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1236227..1237567 Desulfohalobium retbaense DSM 5692 8418870 YP_003197913.1 CDS Dret_1047 NC_013223.1 1237567 1238217 D TIGRFAM: dethiobiotin synthase; KEGG: dol:Dole_0681 dethiobiotin synthase; dethiobiotin synthase 1237567..1238217 Desulfohalobium retbaense DSM 5692 8418871 YP_003197914.1 CDS Dret_1048 NC_013223.1 1238229 1239191 D KEGG: dol:Dole_0682 biotin synthase; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 1238229..1239191 Desulfohalobium retbaense DSM 5692 8418872 YP_003197915.1 CDS Dret_1049 NC_013223.1 1239237 1239995 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dma:DMR_18950 putative biotin synthesis protein BioC; type 11 methyltransferase complement(1239237..1239995) Desulfohalobium retbaense DSM 5692 8418873 YP_003197916.1 CDS Dret_1050 NC_013223.1 1239967 1240605 R KEGG: dma:DMR_18960 hypothetical protein; hypothetical protein complement(1239967..1240605) Desulfohalobium retbaense DSM 5692 8418874 YP_003197917.1 CDS Dret_1051 NC_013223.1 1240602 1241798 R PFAM: aminotransferase class I and II; KEGG: dma:DMR_18980 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase complement(1240602..1241798) Desulfohalobium retbaense DSM 5692 8418875 YP_003197918.1 CDS Dret_1052 NC_013223.1 1242228 1243091 D PFAM: protein of unknown function DUF89; KEGG: dde:Dde_3221 hypothetical protein; hypothetical protein 1242228..1243091 Desulfohalobium retbaense DSM 5692 8418877 YP_003197919.1 CDS Dret_1053 NC_013223.1 1243395 1245743 D PFAM: helicase domain protein; helicase-associated domain protein; SMART: helicase domain protein; DEAD-like helicase; KEGG: aeh:Mlg_1473 helicase domain-containing protein; helicase domain-containing protein 1243395..1245743 Desulfohalobium retbaense DSM 5692 8418878 YP_003197920.1 CDS Dret_1054 NC_013223.1 1245937 1246281 D KEGG: dma:DMR_10450 hypothetical protein; hypothetical protein 1245937..1246281 Desulfohalobium retbaense DSM 5692 8418879 YP_003197921.1 CDS Dret_1055 NC_013223.1 1246362 1247924 D TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: dde:Dde_3305 choline/carnitine/betaine transport; choline/carnitine/betaine transporter 1246362..1247924 Desulfohalobium retbaense DSM 5692 8418880 YP_003197922.1 CDS Dret_1056 NC_013223.1 1247979 1248896 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_3306 glycine/betaine/L-proline ABC transporter, periplasmic-binding protein; glycine/betaine ABC transporter substrate-binding protein 1247979..1248896 Desulfohalobium retbaense DSM 5692 8418881 YP_003197923.1 CDS Dret_1057 NC_013223.1 1249128 1249670 R TIGRFAM: C_GCAxxG_C_C family protein; PFAM: C_GCAxxG_C_C family protein; KEGG: dma:DMR_15630 hypothetical protein; C_GCAxxG_C_C family protein complement(1249128..1249670) Desulfohalobium retbaense DSM 5692 8418882 YP_003197924.1 CDS Dret_1058 NC_013223.1 1249727 1250263 R PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: dal:Dalk_4013 rhodanese domain protein; rhodanese domain-containing protein complement(1249727..1250263) Desulfohalobium retbaense DSM 5692 8418883 YP_003197925.1 CDS Dret_1059 NC_013223.1 1250315 1250836 R PFAM: DoxX family protein; KEGG: dal:Dalk_4014 DoxX family protein; DoxX family protein complement(1250315..1250836) Desulfohalobium retbaense DSM 5692 8418884 YP_003197926.1 CDS Dret_1060 NC_013223.1 1251246 1251875 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: amc:MADE_02071 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(1251246..1251875) Desulfohalobium retbaense DSM 5692 8418885 YP_003197927.1 CDS Dret_1061 NC_013223.1 1251866 1252645 R PFAM: protein of unknown function DUF152; KEGG: dvl:Dvul_2619 hypothetical protein; hypothetical protein complement(1251866..1252645) Desulfohalobium retbaense DSM 5692 8418886 YP_003197928.1 CDS Dret_1062 NC_013223.1 1252714 1253319 R TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: dvl:Dvul_2618 5-formyltetrahydrofolate cyclo- ligase; 5-formyltetrahydrofolate cyclo-ligase complement(1252714..1253319) Desulfohalobium retbaense DSM 5692 8418887 YP_003197929.1 CDS Dret_1063 NC_013223.1 1253455 1254135 D PFAM: metallophosphoesterase; KEGG: dma:DMR_23200 hypothetical protein; metallophosphoesterase 1253455..1254135 Desulfohalobium retbaense DSM 5692 8418888 YP_003197930.1 CDS Dret_1064 NC_013223.1 1254135 1254902 D KEGG: dma:DMR_23180 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III 1254135..1254902 Desulfohalobium retbaense DSM 5692 8418889 YP_003197931.1 CDS Dret_1065 NC_013223.1 1255044 1255691 D PFAM: Fumarate reductase respiratory complex; KEGG: dde:Dde_1258 fumarate reductase, cytochrome b subunit; Fumarate reductase respiratory complex 1255044..1255691 Desulfohalobium retbaense DSM 5692 8418890 YP_003197932.1 CDS Dret_1066 NC_013223.1 1256069 1257913 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 1256069..1257913 Desulfohalobium retbaense DSM 5692 8418891 YP_003197933.1 CDS frdB NC_013223.1 1258035 1258814 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 1258035..1258814 Desulfohalobium retbaense DSM 5692 8418892 YP_003197934.1 CDS Dret_1068 NC_013223.1 1258795 1259637 D Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 1258795..1259637 Desulfohalobium retbaense DSM 5692 8418893 YP_003197935.1 CDS Dret_1069 NC_013223.1 1259634 1260188 D TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: dvl:Dvul_0124 tartrate/fumarate subfamily Fe- S type hydro-lyase beta subunit; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta 1259634..1260188 Desulfohalobium retbaense DSM 5692 8418894 YP_003197936.1 CDS Dret_1070 NC_013223.1 1260230 1262041 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: avn:Avin_24740 RNA-directed DNA polymerase; RNA-directed DNA polymerase 1260230..1262041 Desulfohalobium retbaense DSM 5692 8418895 YP_003197937.1 CDS Dret_1071 NC_013223.1 1262173 1263282 R TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: dma:DMR_20320 carbamoyl-phosphate synthase small chain; carbamoyl-phosphate synthase small subunit complement(1262173..1263282) Desulfohalobium retbaense DSM 5692 8418896 YP_003197938.1 CDS Dret_1072 NC_013223.1 1263283 1264017 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(1263283..1264017) Desulfohalobium retbaense DSM 5692 8418897 YP_003197939.1 CDS Dret_1073 NC_013223.1 1264020 1265309 R PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: dde:Dde_0367 3-deoxy-D-manno-octulosonic-acid transferase, putative; three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein complement(1264020..1265309) Desulfohalobium retbaense DSM 5692 8418898 YP_003197940.1 CDS Dret_1074 NC_013223.1 1265485 1266393 R KEGG: dvl:Dvul_2649 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase complement(1265485..1266393) Desulfohalobium retbaense DSM 5692 8418899 YP_003197941.1 CDS Dret_1075 NC_013223.1 1266350 1266961 R TIGRFAM: metal dependent phophohydrolase; KEGG: dde:Dde_0365 metal dependent phosphohydrolase; metal dependent phophohydrolase complement(1266350..1266961) Desulfohalobium retbaense DSM 5692 8418900 YP_003197942.1 CDS Dret_1076 NC_013223.1 1267396 1268484 D TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: dds:Ddes_0801 hydrogenase formation HypD protein; hydrogenase expression/formation protein HypD 1267396..1268484 Desulfohalobium retbaense DSM 5692 8418901 YP_003197943.1 CDS Dret_1077 NC_013223.1 1268647 1269657 D TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: dvl:Dvul_2656 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 1268647..1269657 Desulfohalobium retbaense DSM 5692 8418902 YP_003197944.1 CDS Dret_1078 NC_013223.1 1269764 1270615 R KEGG: dma:DMR_26630 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase complement(1269764..1270615) Desulfohalobium retbaense DSM 5692 8418903 YP_003197945.1 CDS Dret_1079 NC_013223.1 1270692 1271678 R PFAM: dihydrouridine synthase DuS; KEGG: dvu:DVU0054 dihydrouridine synthase family protein; dihydrouridine synthase DuS complement(1270692..1271678) Desulfohalobium retbaense DSM 5692 8418904 YP_003197946.1 CDS Dret_1080 NC_013223.1 1271752 1272489 R PFAM: PP-loop domain protein; KEGG: dde:Dde_0244 hypothetical protein; PP-loop domain-containing protein complement(1271752..1272489) Desulfohalobium retbaense DSM 5692 8418905 YP_003197947.1 CDS Dret_1081 NC_013223.1 1272770 1272991 D TIGRFAM: DNA-directed RNA polymerase, omega subunit; KEGG: dma:DMR_19960 DNA-directed RNA polymerase omega subunit; DNA-directed RNA polymerase subunit omega 1272770..1272991 Desulfohalobium retbaense DSM 5692 8418906 YP_003197948.1 CDS Dret_1082 NC_013223.1 1272984 1274093 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1272984..1274093 Desulfohalobium retbaense DSM 5692 8418907 YP_003197949.1 CDS Dret_1083 NC_013223.1 1274095 1274583 D TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: dde:Dde_0249 GTP cyclohydrolase subunit MoaC; molybdenum cofactor biosynthesis protein C 1274095..1274583 Desulfohalobium retbaense DSM 5692 8418908 YP_003197950.1 CDS Dret_1084 NC_013223.1 1274703 1275482 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(1274703..1275482) Desulfohalobium retbaense DSM 5692 8418909 YP_003197951.1 CDS hisH NC_013223.1 1275472 1276113 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(1275472..1276113) Desulfohalobium retbaense DSM 5692 8418910 YP_003197952.1 CDS Dret_1086 NC_013223.1 1276218 1277213 D TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: dde:Dde_3466 ADP-glyceromanno-heptose 6- epimerase precursor; ADP-L-glycero-D-manno-heptose-6-epimerase 1276218..1277213 Desulfohalobium retbaense DSM 5692 8418911 YP_003197953.1 CDS Dret_1087 NC_013223.1 1277232 1278980 R TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; KEGG: dde:Dde_3464 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL complement(1277232..1278980) Desulfohalobium retbaense DSM 5692 8418912 YP_003197954.1 CDS Dret_1088 NC_013223.1 1278977 1281331 R PFAM: Organic solvent tolerance protein; KEGG: dde:Dde_1413 organic solvent tolerance protein, putative; organic solvent tolerance protein complement(1278977..1281331) Desulfohalobium retbaense DSM 5692 8418913 YP_003197955.1 CDS Dret_1089 NC_013223.1 1281441 1281740 R hypothetical protein complement(1281441..1281740) Desulfohalobium retbaense DSM 5692 8418914 YP_003197956.1 CDS Dret_1090 NC_013223.1 1281942 1282796 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: dma:DMR_05100 hypothetical membrane protein; hypothetical protein complement(1281942..1282796) Desulfohalobium retbaense DSM 5692 8418915 YP_003197957.1 CDS Dret_1091 NC_013223.1 1282801 1283529 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_2857 ABC transporter related; ABC transporter complement(1282801..1283529) Desulfohalobium retbaense DSM 5692 8418916 YP_003197958.1 CDS Dret_1092 NC_013223.1 1283640 1284323 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_1919 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(1283640..1284323) Desulfohalobium retbaense DSM 5692 8418917 YP_003197959.1 CDS Dret_1093 NC_013223.1 1284417 1285160 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dde:Dde_0168 extracellular solute-binding protein; family 3 extracellular solute-binding protein complement(1284417..1285160) Desulfohalobium retbaense DSM 5692 8418918 YP_003197960.1 CDS Dret_1094 NC_013223.1 1285369 1285689 D TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; KEGG: dma:DMR_27040 30S ribosomal protein S6; 30S ribosomal protein S6 1285369..1285689 Desulfohalobium retbaense DSM 5692 8418919 YP_003197961.1 CDS rpsR NC_013223.1 1285691 1285951 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1285691..1285951 Desulfohalobium retbaense DSM 5692 8418920 YP_003197962.1 CDS rplI NC_013223.1 1285966 1286448 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 1285966..1286448 Desulfohalobium retbaense DSM 5692 8418921 YP_003197963.1 CDS Dret_1097 NC_013223.1 1286405 1287850 D TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: dvu:DVU0959 replicative DNA helicase; replicative DNA helicase 1286405..1287850 Desulfohalobium retbaense DSM 5692 8418922 YP_003197964.1 CDS Dret_1098 NC_013223.1 1288017 1288523 D PFAM: protein of unknown function DUF456; KEGG: dds:Ddes_0940 protein of unknown function DUF456; hypothetical protein 1288017..1288523 Desulfohalobium retbaense DSM 5692 8418923 YP_003197965.1 CDS Dret_1099 NC_013223.1 1288785 1290242 D TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dde:Dde_0171 L-threonine synthase; threonine synthase 1288785..1290242 Desulfohalobium retbaense DSM 5692 8418924 YP_003197966.1 CDS Dret_1100 NC_013223.1 1290553 1291644 D KEGG: dvl:Dvul_0387 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 1290553..1291644 Desulfohalobium retbaense DSM 5692 8418925 YP_003197967.1 CDS Dret_1101 NC_013223.1 1291654 1293630 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvm:DvMF_2379 ABC transporter related; ABC transporter 1291654..1293630 Desulfohalobium retbaense DSM 5692 8418926 YP_003197968.1 CDS Dret_1102 NC_013223.1 1293614 1294024 D PFAM: NUDIX hydrolase; KEGG: dvm:DvMF_2380 NUDIX hydrolase; NUDIX hydrolase 1293614..1294024 Desulfohalobium retbaense DSM 5692 8418927 YP_003197969.1 CDS Dret_1103 NC_013223.1 1294039 1295754 D KEGG: gme:Gmet_1393 type II secretion system protein E; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; type IV-A pilus assembly ATPase PilB 1294039..1295754 Desulfohalobium retbaense DSM 5692 8418928 YP_003197970.1 CDS Dret_1104 NC_013223.1 1295864 1297069 D PFAM: Type II secretion system F domain; KEGG: dal:Dalk_1782 type II secretion system protein; type II secretion system F domain-containing protein 1295864..1297069 Desulfohalobium retbaense DSM 5692 8418929 YP_003197971.1 CDS Dret_1105 NC_013223.1 1297323 1298204 D KEGG: dma:DMR_16040 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 1297323..1298204 Desulfohalobium retbaense DSM 5692 8418930 YP_003197972.1 CDS Dret_1106 NC_013223.1 1298361 1299383 D KEGG: dde:Dde_0254 aspartate semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; aspartate-semialdehyde dehydrogenase 1298361..1299383 Desulfohalobium retbaense DSM 5692 8418931 YP_003197973.1 CDS Dret_1107 NC_013223.1 1299650 1300594 D PFAM: aminotransferase class IV; KEGG: dma:DMR_16060 aminotransferase class IV; class IV aminotransferase 1299650..1300594 Desulfohalobium retbaense DSM 5692 8418932 YP_003197974.1 CDS Dret_1108 NC_013223.1 1300594 1301667 D PFAM: glycosyl transferase group 1; KEGG: dvm:DvMF_2384 glycosyl transferase group 1; group 1 glycosyl transferase 1300594..1301667 Desulfohalobium retbaense DSM 5692 8418933 YP_003197975.1 CDS Dret_1109 NC_013223.1 1301643 1301909 R hypothetical protein complement(1301643..1301909) Desulfohalobium retbaense DSM 5692 8418934 YP_003197976.1 CDS Dret_1110 NC_013223.1 1302071 1302967 R PFAM: import inner membrane translocase subunit Tim44; KEGG: dde:Dde_0773 hypothetical protein; import inner membrane translocase subunit Tim44 complement(1302071..1302967) Desulfohalobium retbaense DSM 5692 8418935 YP_003197977.1 CDS Dret_1111 NC_013223.1 1303601 1304512 R KEGG: dma:DMR_22050 phosphoribosylaminoimidazole- succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(1303601..1304512) Desulfohalobium retbaense DSM 5692 8418938 YP_003197978.1 CDS Dret_1112 NC_013223.1 1304637 1305401 R KEGG: noc:Noc_1700 PAS sensor, signal transduction histidine kinase; hypothetical protein complement(1304637..1305401) Desulfohalobium retbaense DSM 5692 8418939 YP_003197979.1 CDS Dret_1113 NC_013223.1 1305478 1305921 R PFAM: NIL domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_0262 4Fe-4S ferredoxin iron-sulfur binding domain protein; NIL domain-containing protein complement(1305478..1305921) Desulfohalobium retbaense DSM 5692 8418940 YP_003197980.1 CDS Dret_1114 NC_013223.1 1306085 1306963 R KEGG: dde:Dde_2145 TPR domain-containing protein; TIGRFAM: tol-pal system protein YbgF; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; tol-pal system protein YbgF complement(1306085..1306963) Desulfohalobium retbaense DSM 5692 8418941 YP_003197981.1 CDS Dret_1115 NC_013223.1 1306986 1307201 R KEGG: dvm:DvMF_0264 hypothetical protein; hypothetical protein complement(1306986..1307201) Desulfohalobium retbaense DSM 5692 8418942 YP_003197982.1 CDS Dret_1116 NC_013223.1 1307201 1307950 R TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: dal:Dalk_1768 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase complement(1307201..1307950) Desulfohalobium retbaense DSM 5692 8418943 YP_003197983.1 CDS Dret_1117 NC_013223.1 1307931 1308428 R TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: dma:DMR_22180 lipoprotein signal peptidase; lipoprotein signal peptidase complement(1307931..1308428) Desulfohalobium retbaense DSM 5692 8418944 YP_003197984.1 CDS ileS NC_013223.1 1308469 1311285 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(1308469..1311285) Desulfohalobium retbaense DSM 5692 8418945 YP_003197985.1 CDS Dret_1119 NC_013223.1 1311446 1312282 R TIGRFAM: inosine guanosine and xanthosine phosphorylase family; PFAM: purine or other phosphorylase family 1; KEGG: dvm:DvMF_0821 purine nucleoside phosphorylase; inosine guanosine and xanthosine phosphorylase family protein complement(1311446..1312282) Desulfohalobium retbaense DSM 5692 8418946 YP_003197986.1 CDS Dret_1120 NC_013223.1 1312942 1314357 D PFAM: Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthase L chain ATP- binding; KEGG: dma:DMR_12700 acetyl-CoA carboxylase biotin carboxylase subunit; pyruvate carboxylase 1312942..1314357 Desulfohalobium retbaense DSM 5692 8418947 YP_003197987.1 CDS Dret_1121 NC_013223.1 1314424 1316673 D PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: dvm:DvMF_0816 acetyl-CoA carboxylase; Acetyl-CoA carboxylase 1314424..1316673 Desulfohalobium retbaense DSM 5692 8418948 YP_003197988.1 CDS Dret_1122 NC_013223.1 1316737 1317420 D KEGG: dvm:DvMF_0815 hypothetical protein; hypothetical protein 1316737..1317420 Desulfohalobium retbaense DSM 5692 8418949 YP_003197989.1 CDS Dret_1123 NC_013223.1 1317425 1317763 D KEGG: dvl:Dvul_1018 hypothetical protein; hypothetical protein 1317425..1317763 Desulfohalobium retbaense DSM 5692 8418950 YP_003197990.1 CDS Dret_1124 NC_013223.1 1317826 1318296 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dds:Ddes_0455 single-strand binding protein; single-strand binding protein 1317826..1318296 Desulfohalobium retbaense DSM 5692 8418951 YP_003197991.1 CDS Dret_1125 NC_013223.1 1318531 1320840 D KEGG: rfr:Rfer_2637 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1318531..1320840 Desulfohalobium retbaense DSM 5692 8418952 YP_003197992.1 CDS Dret_1126 NC_013223.1 1320881 1321117 R KEGG: dma:DMR_24220 hypothetical protein; hypothetical protein complement(1320881..1321117) Desulfohalobium retbaense DSM 5692 8418953 YP_003197993.1 CDS Dret_1127 NC_013223.1 1321098 1322168 R hypothetical protein complement(1321098..1322168) Desulfohalobium retbaense DSM 5692 8418954 YP_003197994.1 CDS Dret_1128 NC_013223.1 1322140 1322925 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dma:DMR_24200 chromosome partitioning protein ParA; Cobyrinic acid ac-diamide synthase complement(1322140..1322925) Desulfohalobium retbaense DSM 5692 8418955 YP_003197995.1 CDS Dret_1129 NC_013223.1 1323131 1324141 R PFAM: aminodeoxychorismate lyase; KEGG: dde:Dde_0315 aminodeoxychorismate lyase; aminodeoxychorismate lyase complement(1323131..1324141) Desulfohalobium retbaense DSM 5692 8418956 YP_003197996.1 CDS Dret_1130 NC_013223.1 1324184 1324612 R PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: dde:Dde_0314 Holliday junction resolvase YqgF; Holliday junction resolvase YqgF complement(1324184..1324612) Desulfohalobium retbaense DSM 5692 8418957 YP_003197997.1 CDS Dret_1131 NC_013223.1 1324630 1328223 R PFAM: FAD linked oxidase domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dma:DMR_33110 putative FAD linked oxidase; FAD linked oxidase domain-containing protein complement(1324630..1328223) Desulfohalobium retbaense DSM 5692 8418958 YP_003197998.1 CDS Dret_1132 NC_013223.1 1328716 1329972 R KEGG: dma:DMR_11340 phenylacetate-coenzyme A ligase; phenylacetate--CoA ligase complement(1328716..1329972) Desulfohalobium retbaense DSM 5692 8418959 YP_003197999.1 CDS Dret_1133 NC_013223.1 1329984 1330769 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bav:BAV2835 ABC transporter, ATP-binding protein; ABC transporter complement(1329984..1330769) Desulfohalobium retbaense DSM 5692 8418960 YP_003198000.1 CDS Dret_1134 NC_013223.1 1330766 1331497 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_4073 ABC transporter related; ABC transporter complement(1330766..1331497) Desulfohalobium retbaense DSM 5692 8418961 YP_003198001.1 CDS Dret_1135 NC_013223.1 1331545 1332441 R PFAM: inner-membrane translocator; KEGG: gbm:Gbem_2187 inner-membrane translocator; inner-membrane translocator complement(1331545..1332441) Desulfohalobium retbaense DSM 5692 8418962 YP_003198002.1 CDS Dret_1136 NC_013223.1 1332472 1333332 R PFAM: inner-membrane translocator; KEGG: dma:DMR_22440 ABC transporter permease protein; inner-membrane translocator complement(1332472..1333332) Desulfohalobium retbaense DSM 5692 8418963 YP_003198003.1 CDS Dret_1137 NC_013223.1 1333395 1334576 R PFAM: Extracellular ligand-binding receptor; KEGG: mxa:MXAN_6665 putative branched chain amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular ligand-binding receptor complement(1333395..1334576) Desulfohalobium retbaense DSM 5692 8418964 YP_003198004.1 CDS Dret_1138 NC_013223.1 1334664 1335095 R PFAM: amino acid-binding ACT domain protein; KEGG: dvm:DvMF_0447 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein complement(1334664..1335095) Desulfohalobium retbaense DSM 5692 8418965 YP_003198005.1 CDS Dret_1139 NC_013223.1 1335301 1336608 R KEGG: dma:DMR_25440 phenylacetate-coenzyme A ligase; phenylacetate--CoA ligase complement(1335301..1336608) Desulfohalobium retbaense DSM 5692 8418966 YP_003198006.1 CDS Dret_1140 NC_013223.1 1337079 1337471 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: dma:DMR_25430 hypothetical protein; iojap family protein 1337079..1337471 Desulfohalobium retbaense DSM 5692 8418967 YP_003198007.1 CDS Dret_1141 NC_013223.1 1337464 1339038 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 1337464..1339038 Desulfohalobium retbaense DSM 5692 8418968 YP_003198008.1 CDS Dret_1142 NC_013223.1 1339035 1339274 D KEGG: dvm:DvMF_0438 hypothetical protein; hypothetical protein 1339035..1339274 Desulfohalobium retbaense DSM 5692 8418969 YP_003198009.1 CDS Dret_1143 NC_013223.1 1339457 1340335 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: maq:Maqu_2825 hypothetical protein; hypothetical protein complement(1339457..1340335) Desulfohalobium retbaense DSM 5692 8418970 YP_003198010.1 CDS Dret_1144 NC_013223.1 1340414 1341559 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1340414..1341559 Desulfohalobium retbaense DSM 5692 8418971 YP_003198011.1 CDS Dret_1145 NC_013223.1 1341789 1342499 D KEGG: pla:Plav_1484 phosphatidylcholine synthase; phosphatidylcholine synthase 1341789..1342499 Desulfohalobium retbaense DSM 5692 8418972 YP_003198012.1 CDS Dret_1146 NC_013223.1 1343082 1343552 D PFAM: UspA domain protein; KEGG: sfu:Sfum_0818 UspA domain protein; UspA domain-containing protein 1343082..1343552 Desulfohalobium retbaense DSM 5692 8418974 YP_003198013.1 CDS Dret_1147 NC_013223.1 1343649 1344077 D PFAM: Class I peptide chain release factor; KEGG: tgr:Tgr7_1684 class I peptide chain release factor; class I peptide chain release factor 1343649..1344077 Desulfohalobium retbaense DSM 5692 8418975 YP_003198014.1 CDS Dret_1148 NC_013223.1 1344161 1345411 D PFAM: metallophosphoesterase; KEGG: dat:HRM2_43350 DNA repair exonuclease family protein; metallophosphoesterase 1344161..1345411 Desulfohalobium retbaense DSM 5692 8418976 YP_003198015.1 CDS Dret_1149 NC_013223.1 1345408 1348899 D PFAM: SMC domain protein; KEGG: dat:HRM2_43340 hypothetical protein; SMC domain-containing protein 1345408..1348899 Desulfohalobium retbaense DSM 5692 8418977 YP_003198016.1 CDS Dret_1150 NC_013223.1 1349150 1349818 D KEGG: tmz:Tmz1t_0643 methyltransferase type 12; methyltransferase type 12 1349150..1349818 Desulfohalobium retbaense DSM 5692 8418978 YP_003198017.1 CDS Dret_1151 NC_013223.1 1350483 1351868 R KEGG: cvi:CV_2648 D-serine dehydratase; TIGRFAM: D-serine ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; D-serine ammonia-lyase complement(1350483..1351868) Desulfohalobium retbaense DSM 5692 8418979 YP_003198018.1 CDS Dret_1152 NC_013223.1 1352416 1354692 D KEGG: dat:HRM2_15700 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: Transcriptional regulator, histidine kinase sensor-like; PAS fold-3 domain protein; response regulator receiver; PAS fold domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAC repeat-containing protein; histidine kinase A domain protein; PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 1352416..1354692 Desulfohalobium retbaense DSM 5692 8418980 YP_003198019.1 CDS Dret_1153 NC_013223.1 1354844 1357654 R KEGG: har:HEAR1092 putative sensory protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(1354844..1357654) Desulfohalobium retbaense DSM 5692 8418981 YP_003198020.1 CDS Dret_1154 NC_013223.1 1357798 1359240 R SMART: AAA ATPase; KEGG: sat:SYN_00051 ATPase with chaperone activity; ATPase AAA complement(1357798..1359240) Desulfohalobium retbaense DSM 5692 8418982 YP_003198021.1 CDS Dret_1155 NC_013223.1 1359246 1359803 R KEGG: csa:Csal_2511 hypothetical protein; hypothetical protein complement(1359246..1359803) Desulfohalobium retbaense DSM 5692 8418983 YP_003198022.1 CDS Dret_1156 NC_013223.1 1359980 1360948 R PFAM: OmpA/MotB domain protein; KEGG: dat:HRM2_27280 OmpA2; OmpA/MotB domain-containing protein complement(1359980..1360948) Desulfohalobium retbaense DSM 5692 8418984 YP_003198023.1 CDS Dret_1157 NC_013223.1 1361058 1362626 R PFAM: TPR repeat-containing protein; Sporulation domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: sat:SYN_01500 TPR repeat-containing protein; hypothetical protein complement(1361058..1362626) Desulfohalobium retbaense DSM 5692 8418985 YP_003198024.1 CDS Dret_1158 NC_013223.1 1362746 1363693 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: sat:SYN_01501 TPR repeat-containing protein; hypothetical protein complement(1362746..1363693) Desulfohalobium retbaense DSM 5692 8418986 YP_003198025.1 CDS Dret_1159 NC_013223.1 1363773 1364735 R PFAM: Type II secretion system F domain; KEGG: sfu:Sfum_1500 type II secretion system protein; type II secretion system F domain-containing protein complement(1363773..1364735) Desulfohalobium retbaense DSM 5692 8418987 YP_003198026.1 CDS Dret_1160 NC_013223.1 1364914 1365885 R PFAM: Type II secretion system F domain; KEGG: sfu:Sfum_1499 type II secretion system protein; type II secretion system F domain-containing protein complement(1364914..1365885) Desulfohalobium retbaense DSM 5692 8418988 YP_003198027.1 CDS Dret_1161 NC_013223.1 1365926 1367335 R PFAM: type II secretion system protein E; KEGG: sfu:Sfum_1498 type II secretion system protein E; type II secretion system protein E complement(1365926..1367335) Desulfohalobium retbaense DSM 5692 8418989 YP_003198028.1 CDS Dret_1162 NC_013223.1 1367450 1368619 R KEGG: sfu:Sfum_1497 response regulator receiver protein; response regulator receiver protein complement(1367450..1368619) Desulfohalobium retbaense DSM 5692 8418990 YP_003198029.1 CDS Dret_1163 NC_013223.1 1368710 1369681 R PFAM: Protein of unknown function DUF2134, membrane; KEGG: vvy:VV2658 hypothetical protein; hypothetical protein complement(1368710..1369681) Desulfohalobium retbaense DSM 5692 8418991 YP_003198030.1 CDS Dret_1164 NC_013223.1 1369700 1370107 R PFAM: TadE family protein; KEGG: sat:SYN_01494 flp pilus assembly protein family protein; TadE family protein complement(1369700..1370107) Desulfohalobium retbaense DSM 5692 8418992 YP_003198031.1 CDS Dret_1165 NC_013223.1 1370136 1370567 R PFAM: TadE family protein; KEGG: sfu:Sfum_1495 TadE family protein; TadE family protein complement(1370136..1370567) Desulfohalobium retbaense DSM 5692 8418993 YP_003198032.1 CDS Dret_1166 NC_013223.1 1370771 1371085 R hypothetical protein complement(1370771..1371085) Desulfohalobium retbaense DSM 5692 8418994 YP_003198033.1 CDS Dret_1167 NC_013223.1 1371223 1372590 R PFAM: type II and III secretion system protein; transport-associated; KEGG: sfu:Sfum_1493 type II and III secretion system protein; type II and III secretion system protein complement(1371223..1372590) Desulfohalobium retbaense DSM 5692 8418995 YP_003198034.1 CDS Dret_1168 NC_013223.1 1372662 1373549 R TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: sfu:Sfum_1492 SAF domain; Flp pilus assembly protein CpaB complement(1372662..1373549) Desulfohalobium retbaense DSM 5692 8418996 YP_003198035.1 CDS Dret_1169 NC_013223.1 1374030 1375367 R PFAM: transposase IS4 family protein; KEGG: maq:Maqu_0982 transposase, IS4 family protein; transposase IS4 family protein complement(1374030..1375367) Desulfohalobium retbaense DSM 5692 8418997 YP_003198036.1 CDS Dret_1170 NC_013223.1 1375494 1376063 R PFAM: peptidase A24A prepilin type IV; KEGG: sat:SYN_01490 flp pilus assembly protein, protease; peptidase A24A prepilin type IV complement(1375494..1376063) Desulfohalobium retbaense DSM 5692 8418998 YP_003198037.1 CDS Dret_1171 NC_013223.1 1376079 1376249 R PFAM: Flp/Fap pilin component; KEGG: dps:DP1538 pilus assembly protein pilin subunit; Flp/Fap pilin component complement(1376079..1376249) Desulfohalobium retbaense DSM 5692 8418999 YP_003198038.1 CDS Dret_1172 NC_013223.1 1376346 1376516 R PFAM: Flp/Fap pilin component; KEGG: afw:Anae109_3972 Flp/Fap pilin component; Flp/Fap pilin component complement(1376346..1376516) Desulfohalobium retbaense DSM 5692 8419000 YP_003198039.1 CDS Dret_1173 NC_013223.1 1377088 1378047 D PFAM: glycosyl transferase family 2; KEGG: rpi:Rpic_0600 glycosyl transferase family 2; family 2 glycosyl transferase 1377088..1378047 Desulfohalobium retbaense DSM 5692 8419001 YP_003198040.1 CDS Dret_1174 NC_013223.1 1378164 1379390 D PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1378164..1379390 Desulfohalobium retbaense DSM 5692 8419002 YP_003198041.1 CDS Dret_1175 NC_013223.1 1379623 1381122 D KEGG: dat:HRM2_39510 IstA2; IstA2 1379623..1381122 Desulfohalobium retbaense DSM 5692 8419003 YP_003198042.1 CDS Dret_1176 NC_013223.1 1381119 1381877 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pca:Pcar_0791 putative DNA replication factor; IstB domain-containing protein ATP-binding protein 1381119..1381877 Desulfohalobium retbaense DSM 5692 8419004 YP_003198043.1 CDS Dret_1177 NC_013223.1 1382148 1383374 R PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(1382148..1383374) Desulfohalobium retbaense DSM 5692 8419005 YP_003198044.1 CDS Dret_1178 NC_013223.1 1383483 1385039 R KEGG: ppd:Ppro_2695 hypothetical protein; hypothetical protein complement(1383483..1385039) Desulfohalobium retbaense DSM 5692 8419006 YP_003198045.1 CDS Dret_1179 NC_013223.1 1385173 1386702 R PFAM: Protein of unknown function DUF2079, membrane; KEGG: scl:sce7388 hypothetical protein; hypothetical protein complement(1385173..1386702) Desulfohalobium retbaense DSM 5692 8419007 YP_003198046.1 CDS Dret_1180 NC_013223.1 1386998 1387999 D PFAM: glycosyl transferase family 2; KEGG: amc:MADE_02590 glycosyl transferase, family 2; family 2 glycosyl transferase 1386998..1387999 Desulfohalobium retbaense DSM 5692 8419008 YP_003198047.1 CDS Dret_1181 NC_013223.1 1388142 1389401 D PFAM: glycosyl transferase group 1; KEGG: amc:MADE_02589 glycosyltransferase; group 1 glycosyl transferase 1388142..1389401 Desulfohalobium retbaense DSM 5692 8419009 YP_003198048.1 CDS Dret_1182 NC_013223.1 1389493 1390416 R hypothetical protein complement(1389493..1390416) Desulfohalobium retbaense DSM 5692 8419010 YP_003198049.1 CDS Dret_1183 NC_013223.1 1390413 1391312 R KEGG: scl:sce8020 hypothetical protein; hypothetical protein complement(1390413..1391312) Desulfohalobium retbaense DSM 5692 8419011 YP_003198050.1 CDS Dret_1184 NC_013223.1 1391604 1393820 R KEGG: mfa:Mfla_1183 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS domain containing protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) complement(1391604..1393820) Desulfohalobium retbaense DSM 5692 8419012 YP_003198051.1 CDS Dret_1185 NC_013223.1 1393813 1395903 R PFAM: Metal-dependent hydrolase HDOD; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: rfr:Rfer_2486 histidine kinase; signal transduction histidine kinase, nitrogen specific, NtrB complement(1393813..1395903) Desulfohalobium retbaense DSM 5692 8419013 YP_003198052.1 CDS Dret_1186 NC_013223.1 1396201 1396296 R hypothetical protein complement(1396201..1396296) Desulfohalobium retbaense DSM 5692 8419014 YP_003198053.1 CDS Dret_1187 NC_013223.1 1397241 1397696 D PFAM: protein of unknown function DUF107; KEGG: dps:DP1870 hypothetical protein; hypothetical protein 1397241..1397696 Desulfohalobium retbaense DSM 5692 8419015 YP_003198054.1 CDS Dret_1188 NC_013223.1 1397715 1398647 D PFAM: band 7 protein; SMART: band 7 protein; KEGG: dps:DP1869 hypothetical protein; hypothetical protein 1397715..1398647 Desulfohalobium retbaense DSM 5692 8419016 YP_003198055.1 CDS Dret_1189 NC_013223.1 1398679 1400283 R PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: dma:DMR_40640 putative transport protein; sodium/hydrogen exchanger complement(1398679..1400283) Desulfohalobium retbaense DSM 5692 8419017 YP_003198056.1 CDS Dret_1190 NC_013223.1 1400503 1400898 R KEGG: dal:Dalk_5271 hypothetical protein; hypothetical protein complement(1400503..1400898) Desulfohalobium retbaense DSM 5692 8419018 YP_003198057.1 CDS Dret_1191 NC_013223.1 1401026 1401310 R KEGG: dol:Dole_2385 hypothetical protein; hypothetical protein complement(1401026..1401310) Desulfohalobium retbaense DSM 5692 8419019 YP_003198058.1 CDS Dret_1192 NC_013223.1 1401307 1404153 R KEGG: dol:Dole_2384 hypothetical protein; hypothetical protein complement(1401307..1404153) Desulfohalobium retbaense DSM 5692 8419020 YP_003198059.1 CDS Dret_1193 NC_013223.1 1404505 1404912 R PFAM: Protein of unknown function DUF2177, membrane; KEGG: dol:Dole_0351 hypothetical protein; hypothetical protein complement(1404505..1404912) Desulfohalobium retbaense DSM 5692 8419021 YP_003198060.1 CDS Dret_1194 NC_013223.1 1405215 1406171 D PFAM: Auxin Efflux Carrier; KEGG: dat:HRM2_47110 putative permease; auxin efflux carrier family protein 1405215..1406171 Desulfohalobium retbaense DSM 5692 8419022 YP_003198061.1 CDS Dret_1195 NC_013223.1 1406271 1407047 D TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: glo:Glov_3339 phage SPO1 DNA polymerase- related protein; phage SPO1 DNA polymerase-like protein 1406271..1407047 Desulfohalobium retbaense DSM 5692 8419023 YP_003198062.1 CDS Dret_1196 NC_013223.1 1407328 1407897 D KEGG: dps:DP1297 hypothetical protein; hypothetical protein 1407328..1407897 Desulfohalobium retbaense DSM 5692 8419024 YP_003198063.1 CDS Dret_1197 NC_013223.1 1407961 1409334 D KEGG: dps:DP2951 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1407961..1409334 Desulfohalobium retbaense DSM 5692 8419025 YP_003198064.1 CDS Dret_1198 NC_013223.1 1409515 1409934 R KEGG: gsu:GSU1412 hypothetical protein; hypothetical protein complement(1409515..1409934) Desulfohalobium retbaense DSM 5692 8419026 YP_003198065.1 CDS Dret_1199 NC_013223.1 1410067 1411614 R PFAM: Bile acid:sodium symporter; UspA domain protein; KEGG: dal:Dalk_1082 bile acid:sodium symporter; bile acid:sodium symporter complement(1410067..1411614) Desulfohalobium retbaense DSM 5692 8419027 YP_003198066.1 CDS Dret_1200 NC_013223.1 1411823 1412119 R PFAM: Thioredoxin domain; KEGG: dal:Dalk_1080 thioredoxin; thioredoxin domain-containing protein complement(1411823..1412119) Desulfohalobium retbaense DSM 5692 8419028 YP_003198067.1 CDS Dret_1201 NC_013223.1 1412408 1413823 D KEGG: dal:Dalk_1079 PAS modulated sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: AAA ATPase; PAS domain containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator 1412408..1413823 Desulfohalobium retbaense DSM 5692 8419029 YP_003198068.1 CDS Dret_1202 NC_013223.1 1414109 1414576 D PFAM: PEBP family protein; KEGG: sun:SUN_0961 hypothetical protein; PEBP family protein 1414109..1414576 Desulfohalobium retbaense DSM 5692 8419030 YP_003198069.1 CDS Dret_1203 NC_013223.1 1414702 1415739 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_0285 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1414702..1415739 Desulfohalobium retbaense DSM 5692 8419031 YP_003198070.1 CDS Dret_1204 NC_013223.1 1415918 1416442 D PFAM: nitroreductase; KEGG: dvl:Dvul_0809 nitroreductase; nitroreductase 1415918..1416442 Desulfohalobium retbaense DSM 5692 8419032 YP_003198071.1 CDS Dret_1205 NC_013223.1 1416761 1417339 D PFAM: Rubrerythrin; KEGG: glo:Glov_1797 rubrerythrin; rubrerythrin 1416761..1417339 Desulfohalobium retbaense DSM 5692 8419033 YP_003198072.1 CDS Dret_1206 NC_013223.1 1417871 1418866 D PFAM: protein of unknown function DUF1611; KEGG: mes:Meso_0034 protein of unknown function DUF1611; hypothetical protein 1417871..1418866 Desulfohalobium retbaense DSM 5692 8419034 YP_003198073.1 CDS Dret_1207 NC_013223.1 1418863 1419846 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: tau:Tola_0562 mandelate racemase/muconate lactonizing protein; mandelate racemase/muconate lactonizing protein 1418863..1419846 Desulfohalobium retbaense DSM 5692 8419035 YP_003198074.1 CDS Dret_1208 NC_013223.1 1419977 1420831 D PFAM: aminotransferase class IV; KEGG: rlg:Rleg_0536 aminotransferase class IV; class IV aminotransferase 1419977..1420831 Desulfohalobium retbaense DSM 5692 8419036 YP_003198075.1 CDS Dret_1209 NC_013223.1 1420871 1421092 R hypothetical protein complement(1420871..1421092) Desulfohalobium retbaense DSM 5692 8419037 YP_003198076.1 CDS Dret_1210 NC_013223.1 1421092 1422681 R PFAM: Radical SAM domain protein; KEGG: dol:Dole_0890 radical SAM domain-containing protein; radical SAM protein complement(1421092..1422681) Desulfohalobium retbaense DSM 5692 8419038 YP_003198077.1 CDS Dret_1211 NC_013223.1 1423090 1423197 R hypothetical protein complement(1423090..1423197) Desulfohalobium retbaense DSM 5692 8419039 YP_003198078.1 CDS Dret_1212 NC_013223.1 1423184 1423327 R hypothetical protein complement(1423184..1423327) Desulfohalobium retbaense DSM 5692 8419040 YP_003198079.1 CDS Dret_1213 NC_013223.1 1423613 1424359 D KEGG: tgr:Tgr7_1681 hypothetical protein; hypothetical protein 1423613..1424359 Desulfohalobium retbaense DSM 5692 8419041 YP_003198080.1 CDS Dret_1214 NC_013223.1 1424712 1425044 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: gbm:Gbem_3791 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 1424712..1425044 Desulfohalobium retbaense DSM 5692 8419042 YP_003198081.1 CDS Dret_1215 NC_013223.1 1425086 1425508 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dal:Dalk_4724 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 1425086..1425508 Desulfohalobium retbaense DSM 5692 8419043 YP_003198082.1 CDS Dret_1216 NC_013223.1 1425505 1425840 D KEGG: cti:RALTA_B0427 hypothetical protein; hypothetical protein 1425505..1425840 Desulfohalobium retbaense DSM 5692 8419044 YP_003198083.1 CDS Dret_1217 NC_013223.1 1426124 1427155 D PFAM: Radical SAM domain protein; KEGG: dvm:DvMF_2991 radical SAM domain protein; radical SAM protein 1426124..1427155 Desulfohalobium retbaense DSM 5692 8419045 YP_003198084.1 CDS Dret_1218 NC_013223.1 1427253 1427885 D KEGG: sfu:Sfum_3540 hypothetical protein; hypothetical protein 1427253..1427885 Desulfohalobium retbaense DSM 5692 8419046 YP_003198085.1 CDS Dret_1219 NC_013223.1 1428078 1428392 R hypothetical protein complement(1428078..1428392) Desulfohalobium retbaense DSM 5692 8419047 YP_003198086.1 CDS Dret_1220 NC_013223.1 1428505 1430286 R PFAM: Uncharacterised protein family UPF0324; KEGG: dvm:DvMF_1363 hypothetical protein; hypothetical protein complement(1428505..1430286) Desulfohalobium retbaense DSM 5692 8419048 YP_003198087.1 CDS Dret_1221 NC_013223.1 1431021 1433609 D KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; multi-sensor signal transduction histidine kinase 1431021..1433609 Desulfohalobium retbaense DSM 5692 8419049 YP_003198088.1 CDS Dret_1222 NC_013223.1 1433729 1435141 D PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dma:DMR_33180 response regulator; putative two component, sigma54 specific, transcriptional regulator, Fis family 1433729..1435141 Desulfohalobium retbaense DSM 5692 8419050 YP_003198089.1 CDS Dret_1223 NC_013223.1 1435335 1435676 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: dps:DP2053 hypothetical protein; alkylhydroperoxidase complement(1435335..1435676) Desulfohalobium retbaense DSM 5692 8419051 YP_003198090.1 CDS Dret_1224 NC_013223.1 1435927 1437192 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sat:SYN_01172 Co/Zn/Cd cation transporter; cation diffusion facilitator family transporter 1435927..1437192 Desulfohalobium retbaense DSM 5692 8419052 YP_003198091.1 CDS Dret_1225 NC_013223.1 1437349 1438980 R PFAM: formylmethanofuran dehydrogenase subunit E region; molybdopterin binding domain; KEGG: dde:Dde_0685 tungsten formylmethanofuran dehydrogenase family protein/molybdopterin binding protein; formylmethanofuran dehydrogenase subunit E complement(1437349..1438980) Desulfohalobium retbaense DSM 5692 8419053 YP_003198092.1 CDS Dret_1226 NC_013223.1 1439047 1439592 R KEGG: dvm:DvMF_0928 hypothetical protein; hypothetical protein complement(1439047..1439592) Desulfohalobium retbaense DSM 5692 8419054 YP_003198093.1 CDS Dret_1227 NC_013223.1 1439630 1440430 R KEGG: dvm:DvMF_0933 molybdopterin-containing oxidoreductase membrane anchor subunit; molybdopterin-containing oxidoreductase membrane anchor subunit complement(1439630..1440430) Desulfohalobium retbaense DSM 5692 8419055 YP_003198094.1 CDS Dret_1228 NC_013223.1 1440427 1440996 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_0932 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(1440427..1440996) Desulfohalobium retbaense DSM 5692 8419056 YP_003198095.1 CDS Dret_1229 NC_013223.1 1441054 1443330 R PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: dvm:DvMF_0931 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(1441054..1443330) Desulfohalobium retbaense DSM 5692 8419057 YP_003198096.1 CDS Dret_1230 NC_013223.1 1443320 1443910 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: dvm:DvMF_2471 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein complement(1443320..1443910) Desulfohalobium retbaense DSM 5692 8419058 YP_003198097.1 CDS Dret_1231 NC_013223.1 1444136 1445461 R KEGG: dvm:DvMF_0929 transcriptional regulator, LuxR family; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; PAS domain containing protein; transcriptional regulator, LuxR family complement(1444136..1445461) Desulfohalobium retbaense DSM 5692 8419059 YP_003198098.1 CDS Dret_1232 NC_013223.1 1445552 1445692 R hypothetical protein complement(1445552..1445692) Desulfohalobium retbaense DSM 5692 8419060 YP_003198099.1 CDS Dret_1233 NC_013223.1 1445734 1446411 D SMART: regulatory protein Crp; KEGG: dma:DMR_25770 putative carbon monoxide dehydrogenase CooA protein; CarD family transcriptional regulator 1445734..1446411 Desulfohalobium retbaense DSM 5692 8419061 YP_003198100.1 CDS Dret_1234 NC_013223.1 1446576 1448465 D KEGG: dma:DMR_25780 putative carbon monoxide dehydrogenase; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; carbon-monoxide dehydrogenase, catalytic subunit 1446576..1448465 Desulfohalobium retbaense DSM 5692 8419062 YP_003198101.1 CDS Dret_1235 NC_013223.1 1448562 1449338 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dvm:DvMF_2232 carbon monoxide dehydrogenase accessory protein CooC, putative; Cobyrinic acid ac-diamide synthase 1448562..1449338 Desulfohalobium retbaense DSM 5692 8419063 YP_003198102.1 CDS Dret_1236 NC_013223.1 1449587 1451038 R PFAM: Catalase related subgroup; Catalase domain protein; KEGG: csa:Csal_0803 catalase; catalase complement(1449587..1451038) Desulfohalobium retbaense DSM 5692 8419064 YP_003198103.1 CDS Dret_1237 NC_013223.1 1451530 1452276 D PFAM: beta-lactamase domain protein; KEGG: dat:HRM2_46910 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 1451530..1452276 Desulfohalobium retbaense DSM 5692 8419065 YP_003198104.1 CDS Dret_1238 NC_013223.1 1452321 1454372 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; protein of unknown function DUF1365; KEGG: dat:HRM2_48620 cation-efflux family protein; cyclopropane-fatty-acyl-phospholipid synthase complement(1452321..1454372) Desulfohalobium retbaense DSM 5692 8419066 YP_003198105.1 CDS Dret_1239 NC_013223.1 1454369 1455643 R PFAM: FAD dependent oxidoreductase; KEGG: dol:Dole_0350 amine oxidase; FAD dependent oxidoreductase complement(1454369..1455643) Desulfohalobium retbaense DSM 5692 8419067 YP_003198106.1 CDS Dret_1240 NC_013223.1 1455640 1456728 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: xac:XAC1372 hypothetical protein; cyclopropane-fatty-acyl-phospholipid synthase complement(1455640..1456728) Desulfohalobium retbaense DSM 5692 8419068 YP_003198107.1 CDS Dret_1241 NC_013223.1 1456725 1457516 R PFAM: protein of unknown function DUF1295; KEGG: dol:Dole_0352 hypothetical protein; hypothetical protein complement(1456725..1457516) Desulfohalobium retbaense DSM 5692 8419069 YP_003198108.1 CDS Dret_1242 NC_013223.1 1457556 1457930 R PFAM: Protein of unknown function DUF2237; KEGG: mfa:Mfla_0125 hypothetical protein; hypothetical protein complement(1457556..1457930) Desulfohalobium retbaense DSM 5692 8419070 YP_003198109.1 CDS Dret_1243 NC_013223.1 1458157 1458663 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: dvm:DvMF_2078 peptidyl-prolyl cis-trans isomerase cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 1458157..1458663 Desulfohalobium retbaense DSM 5692 8419071 YP_003198110.1 CDS Dret_1244 NC_013223.1 1458981 1459943 D PFAM: Patatin; KEGG: tgr:Tgr7_1058 patatin; patatin 1458981..1459943 Desulfohalobium retbaense DSM 5692 8419072 YP_003198111.1 CDS Dret_1245 NC_013223.1 1460116 1460901 D PFAM: dienelactone hydrolase; KEGG: hch:HCH_02826 dienelactone hydrolase; dienelactone hydrolase 1460116..1460901 Desulfohalobium retbaense DSM 5692 8419073 YP_003198112.1 CDS Dret_1246 NC_013223.1 1460976 1461254 R hypothetical protein complement(1460976..1461254) Desulfohalobium retbaense DSM 5692 8419074 YP_003198113.1 CDS Dret_1247 NC_013223.1 1461708 1462229 R PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_2313 thiol peroxidase (atypical 2-Cys peroxiredoxin); redoxin domain-containing protein complement(1461708..1462229) Desulfohalobium retbaense DSM 5692 8419075 YP_003198114.1 CDS Dret_1248 NC_013223.1 1462583 1464073 D KEGG: sfu:Sfum_2550 hydroxylamine oxidase; hydroxylamine oxidase 1462583..1464073 Desulfohalobium retbaense DSM 5692 8419076 YP_003198115.1 CDS Dret_1249 NC_013223.1 1464306 1464812 D hypothetical protein 1464306..1464812 Desulfohalobium retbaense DSM 5692 8419077 YP_003198116.1 CDS Dret_1250 NC_013223.1 1465036 1465554 D PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dat:HRM2_46890 hypothetical protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein 1465036..1465554 Desulfohalobium retbaense DSM 5692 8419078 YP_003198117.1 CDS Dret_1251 NC_013223.1 1465665 1466162 D KEGG: dal:Dalk_4091 hypothetical protein; hypothetical protein 1465665..1466162 Desulfohalobium retbaense DSM 5692 8419079 YP_003198118.1 CDS Dret_1252 NC_013223.1 1466528 1468531 D PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: csa:Csal_1111 peptidase S15; peptidase S15 1466528..1468531 Desulfohalobium retbaense DSM 5692 8419080 YP_003198119.1 CDS Dret_1253 NC_013223.1 1468628 1469962 D KEGG: sse:Ssed_1941 hypothetical protein; hypothetical protein 1468628..1469962 Desulfohalobium retbaense DSM 5692 8419081 YP_003198120.1 CDS Dret_1254 NC_013223.1 1470073 1470213 D PFAM: Entericidin EcnAB; KEGG: bbr:BB0451 entericidin A anti-toxin precursor; entericidin EcnAB 1470073..1470213 Desulfohalobium retbaense DSM 5692 8419082 YP_003198121.1 CDS Dret_1255 NC_013223.1 1470321 1471688 D PFAM: metallophosphoesterase; KEGG: hha:Hhal_1710 metallophosphoesterase; metallophosphoesterase 1470321..1471688 Desulfohalobium retbaense DSM 5692 8419083 YP_003198122.1 CDS Dret_1256 NC_013223.1 1471685 1475146 D KEGG: aeh:Mlg_0827 hypothetical protein; hypothetical protein 1471685..1475146 Desulfohalobium retbaense DSM 5692 8419084 YP_003198123.1 CDS Dret_1257 NC_013223.1 1475272 1475733 D TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: sfu:Sfum_0940 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase, SixA 1475272..1475733 Desulfohalobium retbaense DSM 5692 8419085 YP_003198124.1 CDS Dret_1258 NC_013223.1 1475901 1476245 R hypothetical protein complement(1475901..1476245) Desulfohalobium retbaense DSM 5692 8419086 YP_003198125.1 CDS Dret_1259 NC_013223.1 1476518 1476841 D KEGG: sdn:Sden_2458 hypothetical protein; hypothetical protein 1476518..1476841 Desulfohalobium retbaense DSM 5692 8419087 YP_003198126.1 CDS Dret_1260 NC_013223.1 1477029 1478870 D TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; Miro domain protein; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; KEGG: dvm:DvMF_0822 GTP-binding protein TypA; GTP-binding protein TypA 1477029..1478870 Desulfohalobium retbaense DSM 5692 8419088 YP_003198127.1 CDS Dret_1261 NC_013223.1 1478966 1480111 R PFAM: iron-containing alcohol dehydrogenase; KEGG: pca:Pcar_2847 alcohol dehydrogenase, class IV; iron-containing alcohol dehydrogenase complement(1478966..1480111) Desulfohalobium retbaense DSM 5692 8419089 YP_003198128.1 CDS Dret_1262 NC_013223.1 1480318 1482378 R TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: dol:Dole_2801 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase complement(1480318..1482378) Desulfohalobium retbaense DSM 5692 8419090 YP_003198129.1 CDS Dret_1263 NC_013223.1 1482485 1482835 R KEGG: sfu:Sfum_3594 hypothetical protein; hypothetical protein complement(1482485..1482835) Desulfohalobium retbaense DSM 5692 8419091 YP_003198130.1 CDS Dret_1264 NC_013223.1 1482951 1483553 R PFAM: NADPH-dependent FMN reductase; KEGG: pca:Pcar_1104 putative NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(1482951..1483553) Desulfohalobium retbaense DSM 5692 8419092 YP_003198131.1 CDS Dret_1265 NC_013223.1 1483951 1484334 D hypothetical protein 1483951..1484334 Desulfohalobium retbaense DSM 5692 8419093 YP_003198132.1 CDS Dret_1266 NC_013223.1 1484413 1485087 R PFAM: cytochrome c class III; KEGG: dma:DMR_02560 cytochrome c3; cytochrome c class III complement(1484413..1485087) Desulfohalobium retbaense DSM 5692 8419094 YP_003198133.1 CDS Dret_1267 NC_013223.1 1485394 1486509 D PFAM: protein of unknown function UPF0118; KEGG: hch:HCH_01685 permease; hypothetical protein 1485394..1486509 Desulfohalobium retbaense DSM 5692 8419095 YP_003198134.1 CDS Dret_1268 NC_013223.1 1486625 1487848 D PFAM: Metal-dependent hydrolase HDOD; EAL domain protein; KEGG: dvl:Dvul_2451 diguanylate phosphodiesterase; diguanylate phosphodiesterase 1486625..1487848 Desulfohalobium retbaense DSM 5692 8419096 YP_003198135.1 CDS Dret_1269 NC_013223.1 1488199 1490301 D KEGG: dvm:DvMF_2564 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; PAS domain containing protein; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1488199..1490301 Desulfohalobium retbaense DSM 5692 8419097 YP_003198136.1 CDS Dret_1270 NC_013223.1 1490674 1491699 D PFAM: Peptidase M23; KEGG: pha:PSHAa2170 peptidase M23/M37 protein; peptidase M23 1490674..1491699 Desulfohalobium retbaense DSM 5692 8419098 YP_003198137.1 CDS Dret_1271 NC_013223.1 1491874 1492350 D PFAM: protein of unknown function DUF583; KEGG: mxa:MXAN_7475 hypothetical protein; hypothetical protein 1491874..1492350 Desulfohalobium retbaense DSM 5692 8419099 YP_003198138.1 CDS Dret_1272 NC_013223.1 1492485 1493429 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: mxa:MXAN_3334 drug/metabolite exporter family protein; hypothetical protein complement(1492485..1493429) Desulfohalobium retbaense DSM 5692 8419100 YP_003198139.1 CDS Dret_1273 NC_013223.1 1493532 1494461 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: hha:Hhal_1647 LysR family transcriptional regulator; LysR family transcriptional regulator 1493532..1494461 Desulfohalobium retbaense DSM 5692 8419101 YP_003198140.1 CDS Dret_1274 NC_013223.1 1494626 1495231 R KEGG: hha:Hhal_1321 hypothetical protein; hypothetical protein complement(1494626..1495231) Desulfohalobium retbaense DSM 5692 8419102 YP_003198141.1 CDS Dret_1275 NC_013223.1 1495451 1496134 R PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: dat:HRM2_37520 OmpF; OmpA/MotB domain-containing protein complement(1495451..1496134) Desulfohalobium retbaense DSM 5692 8419103 YP_003198142.1 CDS Dret_1276 NC_013223.1 1496206 1496871 R PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: dma:DMR_21020 sulfite reductase; nitrite and sulfite reductase 4Fe-4S region complement(1496206..1496871) Desulfohalobium retbaense DSM 5692 8419104 YP_003198143.1 CDS Dret_1277 NC_013223.1 1496907 1498223 R KEGG: dma:DMR_35340 iron-sulfur binding protein; iron-sulfur binding protein complement(1496907..1498223) Desulfohalobium retbaense DSM 5692 8419105 YP_003198144.1 CDS Dret_1278 NC_013223.1 1498208 1498894 R PFAM: nitrite and sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2390 dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits-like; nitrite and sulfite reductase 4Fe-4S region complement(1498208..1498894) Desulfohalobium retbaense DSM 5692 8419106 YP_003198145.1 CDS Dret_1279 NC_013223.1 1499143 1499826 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sfu:Sfum_3445 transcriptional regulator, Crp/Fnr family; CarD family transcriptional regulator 1499143..1499826 Desulfohalobium retbaense DSM 5692 8419107 YP_003198146.1 CDS Dret_1280 NC_013223.1 1500050 1500799 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dat:HRM2_40620 ferredoxin (4Fe-4S iron-sulfur cluster binding protein); 4Fe-4S ferredoxin complement(1500050..1500799) Desulfohalobium retbaense DSM 5692 8419108 YP_003198147.1 CDS Dret_1281 NC_013223.1 1501283 1502677 D PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; KEGG: dde:Dde_3119 hypothetical protein; FAD dependent oxidoreductase 1501283..1502677 Desulfohalobium retbaense DSM 5692 8419109 YP_003198148.1 CDS Dret_1282 NC_013223.1 1502845 1503078 R KEGG: dvu:DVU1130 DNA-binding protein; DNA-binding protein complement(1502845..1503078) Desulfohalobium retbaense DSM 5692 8419110 YP_003198149.1 CDS Dret_1283 NC_013223.1 1503353 1503628 D PFAM: acylphosphatase; KEGG: dma:DMR_44660 putative acylphosphatase; acylphosphatase 1503353..1503628 Desulfohalobium retbaense DSM 5692 8419111 YP_003198150.1 CDS Dret_1284 NC_013223.1 1503682 1504491 D KEGG: dma:DMR_42410 hypothetical protein; hypothetical protein 1503682..1504491 Desulfohalobium retbaense DSM 5692 8419112 YP_003198151.1 CDS Dret_1285 NC_013223.1 1504554 1505147 D PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: dde:Dde_0441 iron-sulfur flavoprotein; NADPH-dependent FMN reductase 1504554..1505147 Desulfohalobium retbaense DSM 5692 8419113 YP_003198152.1 CDS Dret_1286 NC_013223.1 1505303 1506154 R KEGG: sfu:Sfum_0659 apurinic endonuclease Apn1; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; apurinic endonuclease Apn1 complement(1505303..1506154) Desulfohalobium retbaense DSM 5692 8419114 YP_003198153.1 CDS Dret_1287 NC_013223.1 1506380 1509622 R PFAM: protein of unknown function DUF748; KEGG: tmz:Tmz1t_1893 protein of unknown function DUF748; hypothetical protein complement(1506380..1509622) Desulfohalobium retbaense DSM 5692 8419115 YP_003198154.1 CDS Dret_1288 NC_013223.1 1510147 1511025 R PFAM: UspA domain protein; KEGG: dma:DMR_44380 hypothetical protein; UspA domain-containing protein complement(1510147..1511025) Desulfohalobium retbaense DSM 5692 8419117 YP_003198155.1 CDS Dret_1289 NC_013223.1 1510994 1512172 R PFAM: metallophosphoesterase; KEGG: gme:Gmet_0034 metallophosphoesterase; metallophosphoesterase complement(1510994..1512172) Desulfohalobium retbaense DSM 5692 8419118 YP_003198156.1 CDS Dret_1290 NC_013223.1 1512176 1512889 R TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: slo:Shew_0099 pseudouridine synthase Rlu family protein; pseudouridine synthase Rlu family protein complement(1512176..1512889) Desulfohalobium retbaense DSM 5692 8419119 YP_003198157.1 CDS Dret_1291 NC_013223.1 1513222 1514016 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase complement(1513222..1514016) Desulfohalobium retbaense DSM 5692 8419120 YP_003198158.1 CDS Dret_1292 NC_013223.1 1514016 1514822 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_0985 ABC transporter related protein; ABC transporter complement(1514016..1514822) Desulfohalobium retbaense DSM 5692 8419121 YP_003198159.1 CDS Dret_1293 NC_013223.1 1514794 1515876 R KEGG: gbm:Gbem_0984 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; polar amino acid ABC transporter inner membrane subunit complement(1514794..1515876) Desulfohalobium retbaense DSM 5692 8419122 YP_003198160.1 CDS Dret_1294 NC_013223.1 1515904 1516695 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: gsu:GSU0800 amino acid ABC transporter, periplasmic amino acid-binding protein; family 3 extracellular solute-binding protein complement(1515904..1516695) Desulfohalobium retbaense DSM 5692 8419123 YP_003198161.1 CDS Dret_1295 NC_013223.1 1516963 1517142 D KEGG: sfu:Sfum_0324 hypothetical protein; hypothetical protein 1516963..1517142 Desulfohalobium retbaense DSM 5692 8419124 YP_003198162.1 CDS Dret_1296 NC_013223.1 1517158 1518345 D PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1948 permease, putative; YjgP/YjgQ family permease 1517158..1518345 Desulfohalobium retbaense DSM 5692 8419125 YP_003198163.1 CDS Dret_1297 NC_013223.1 1518342 1519418 D PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1949 permease, putative; YjgP/YjgQ family permease 1518342..1519418 Desulfohalobium retbaense DSM 5692 8419126 YP_003198164.1 CDS engB NC_013223.1 1519562 1520179 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1519562..1520179) Desulfohalobium retbaense DSM 5692 8419127 YP_003198165.1 CDS Dret_1299 NC_013223.1 1520354 1521193 D hypothetical protein 1520354..1521193 Desulfohalobium retbaense DSM 5692 8419128 YP_003198166.1 CDS Dret_1300 NC_013223.1 1521205 1521657 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1521205..1521657 Desulfohalobium retbaense DSM 5692 8419129 YP_003198167.1 CDS Dret_1301 NC_013223.1 1521678 1522235 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1521678..1522235 Desulfohalobium retbaense DSM 5692 8419130 YP_003198168.1 CDS Dret_1302 NC_013223.1 1522536 1524779 D PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; KEGG: dma:DMR_23970 DNA translocase; cell division protein FtsK 1522536..1524779 Desulfohalobium retbaense DSM 5692 8419131 YP_003198169.1 CDS Dret_1303 NC_013223.1 1524810 1527155 R TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; KEGG: dde:Dde_0555 (NiFe) hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF complement(1524810..1527155) Desulfohalobium retbaense DSM 5692 8419132 YP_003198170.1 CDS Dret_1304 NC_013223.1 1527193 1528143 R PFAM: protein of unknown function DUF362; KEGG: dde:Dde_3247 hypothetical protein; hypothetical protein complement(1527193..1528143) Desulfohalobium retbaense DSM 5692 8419133 YP_003198171.1 CDS Dret_1305 NC_013223.1 1528136 1529194 R KEGG: dal:Dalk_4628 hypothetical protein; hypothetical protein complement(1528136..1529194) Desulfohalobium retbaense DSM 5692 8419134 YP_003198172.1 CDS Dret_1306 NC_013223.1 1529287 1531578 R KEGG: ppd:Ppro_3008 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein; PAS/PAC sensor hybrid histidine kinase complement(1529287..1531578) Desulfohalobium retbaense DSM 5692 8419135 YP_003198173.1 CDS Dret_1307 NC_013223.1 1531575 1532852 R PFAM: Extracellular ligand-binding receptor; KEGG: dma:DMR_02650 hypothetical protein; extracellular ligand-binding receptor complement(1531575..1532852) Desulfohalobium retbaense DSM 5692 8419136 YP_003198174.1 CDS Dret_1308 NC_013223.1 1532853 1533668 R PFAM: Rhodanese domain protein; Rubrerythrin; SMART: Rhodanese domain protein; KEGG: dde:Dde_3248 rhodanese-like protein; rhodanese domain-containing protein complement(1532853..1533668) Desulfohalobium retbaense DSM 5692 8419137 YP_003198175.1 CDS Dret_1309 NC_013223.1 1533734 1534429 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sfu:Sfum_0240 methyltransferase type 11; type 11 methyltransferase complement(1533734..1534429) Desulfohalobium retbaense DSM 5692 8419138 YP_003198176.1 CDS Dret_1310 NC_013223.1 1534431 1536278 R PFAM: protein of unknown function DUF255; KEGG: dvm:DvMF_2759 protein of unknown function DUF255; hypothetical protein complement(1534431..1536278) Desulfohalobium retbaense DSM 5692 8419139 YP_003198177.1 CDS Dret_1311 NC_013223.1 1536393 1537301 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: gsu:GSU3407 hypothetical protein; hypothetical protein 1536393..1537301 Desulfohalobium retbaense DSM 5692 8419140 YP_003198178.1 CDS Dret_1312 NC_013223.1 1537815 1538918 R PFAM: deoxyhypusine synthase; KEGG: scl:sce5982 hypothetical protein; deoxyhypusine synthase complement(1537815..1538918) Desulfohalobium retbaense DSM 5692 8419141 YP_003198179.1 CDS Dret_1313 NC_013223.1 1538962 1539843 R TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: dal:Dalk_3765 agmatinase; agmatinase complement(1538962..1539843) Desulfohalobium retbaense DSM 5692 8419142 YP_003198180.1 CDS Dret_1314 NC_013223.1 1540171 1540716 R PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex; pyruvoyl-dependent arginine decarboxylase complement(1540171..1540716) Desulfohalobium retbaense DSM 5692 8419143 YP_003198181.1 CDS Dret_1315 NC_013223.1 1540730 1541386 R PFAM: Sporulation domain protein; KEGG: dde:Dde_2296 hypothetical protein; sporulation domain-containing protein complement(1540730..1541386) Desulfohalobium retbaense DSM 5692 8419144 YP_003198182.1 CDS argS NC_013223.1 1541398 1543053 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(1541398..1543053) Desulfohalobium retbaense DSM 5692 8419145 YP_003198183.1 CDS Dret_1317 NC_013223.1 1543123 1544079 R PFAM: Acyl transferase; KEGG: dvl:Dvul_1813 malonyl CoA-acyl carrier protein transacylase; acyl transferase complement(1543123..1544079) Desulfohalobium retbaense DSM 5692 8419146 YP_003198184.1 CDS Dret_1318 NC_013223.1 1544291 1544950 D TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: dde:Dde_2293 methyltransferase GidB; methyltransferase GidB 1544291..1544950 Desulfohalobium retbaense DSM 5692 8419147 YP_003198185.1 CDS Dret_1319 NC_013223.1 1545038 1545250 D KEGG: dde:Dde_2330 hypothetical protein; hypothetical protein 1545038..1545250 Desulfohalobium retbaense DSM 5692 8419148 YP_003198186.1 CDS Dret_1320 NC_013223.1 1545300 1546247 D PFAM: Methyltransferase type 11; KEGG: dde:Dde_2330 hypothetical protein; type 11 methyltransferase 1545300..1546247 Desulfohalobium retbaense DSM 5692 8419149 YP_003198187.1 CDS Dret_1321 NC_013223.1 1546315 1547724 R TIGRFAM: deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: gsu:GSU2829 deoxyribodipyrimidine photolyase, putative; deoxyribodipyrimidine photolyase complement(1546315..1547724) Desulfohalobium retbaense DSM 5692 8419150 YP_003198188.1 CDS Dret_1322 NC_013223.1 1547775 1549316 R PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: dvl:Dvul_2879 NAD-dependent epimerase/dehydratase; NmrA family protein complement(1547775..1549316) Desulfohalobium retbaense DSM 5692 8419151 YP_003198189.1 CDS Dret_1323 NC_013223.1 1549309 1550280 R PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: dal:Dalk_2348 protein of unknown function DUF523; hypothetical protein complement(1549309..1550280) Desulfohalobium retbaense DSM 5692 8419152 YP_003198190.1 CDS Dret_1324 NC_013223.1 1550348 1550842 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: dat:HRM2_43000 hypothetical protein; pyridoxamine 5'-phosphate oxidase-related FMN- binding complement(1550348..1550842) Desulfohalobium retbaense DSM 5692 8419153 YP_003198191.1 CDS Dret_1325 NC_013223.1 1551021 1551929 D PFAM: domain of unknown function DUF1731; NAD- dependent epimerase/dehydratase; KEGG: dal:Dalk_2593 domain of unknown function DUF1731; hypothetical protein 1551021..1551929 Desulfohalobium retbaense DSM 5692 8419154 YP_003198192.1 CDS Dret_1326 NC_013223.1 1552015 1552806 R PFAM: glutamine cyclotransferase; KEGG: dma:DMR_25530 glutamine cyclotransferase family protein; glutamine cyclotransferase complement(1552015..1552806) Desulfohalobium retbaense DSM 5692 8419155 YP_003198193.1 CDS Dret_1327 NC_013223.1 1552862 1553398 D hypothetical protein 1552862..1553398 Desulfohalobium retbaense DSM 5692 8419156 YP_003198194.1 CDS Dret_1328 NC_013223.1 1553561 1554322 R PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: pca:Pcar_0774 FKBP-type peptidyl-prolyl cis- trans isomerase; Peptidylprolyl isomerase complement(1553561..1554322) Desulfohalobium retbaense DSM 5692 8419157 YP_003198195.1 CDS Dret_1329 NC_013223.1 1554593 1555546 D PFAM: Rhomboid family protein; KEGG: geo:Geob_1665 rhomboid family protein; rhomboid family protein 1554593..1555546 Desulfohalobium retbaense DSM 5692 8419158 YP_003198196.1 CDS Dret_1330 NC_013223.1 1555666 1557306 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 1555666..1557306 Desulfohalobium retbaense DSM 5692 8419159 YP_003198197.1 CDS Dret_1331 NC_013223.1 1557338 1558081 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: dat:HRM2_39870 SmuG; uracil-DNA glycosylase 1557338..1558081 Desulfohalobium retbaense DSM 5692 8419160 YP_003198198.1 CDS Dret_1332 NC_013223.1 1558097 1558897 R PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: dvl:Dvul_1399 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(1558097..1558897) Desulfohalobium retbaense DSM 5692 8419161 YP_003198199.1 CDS Dret_1333 NC_013223.1 1559117 1559827 D PFAM: SNARE associated Golgi protein; KEGG: nmu:Nmul_A1523 phospholipase D/transphosphatidylase; hypothetical protein 1559117..1559827 Desulfohalobium retbaense DSM 5692 8419162 YP_003198200.1 CDS Dret_1334 NC_013223.1 1559829 1560413 D KEGG: dvl:Dvul_2210 putative lipoprotein; hypothetical protein 1559829..1560413 Desulfohalobium retbaense DSM 5692 8419163 YP_003198201.1 CDS Dret_1335 NC_013223.1 1560413 1561402 D PFAM: aldo/keto reductase; KEGG: bgl:bglu_1g30170 aldo/keto reductase; aldo/keto reductase 1560413..1561402 Desulfohalobium retbaense DSM 5692 8419164 YP_003198202.1 CDS Dret_1336 NC_013223.1 1561491 1562837 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: dma:DMR_34990 glutathione reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1561491..1562837) Desulfohalobium retbaense DSM 5692 8419165 YP_003198203.1 CDS Dret_1337 NC_013223.1 1562941 1564197 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dvm:DvMF_0353 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(1562941..1564197) Desulfohalobium retbaense DSM 5692 8419166 YP_003198204.1 CDS Dret_1338 NC_013223.1 1564272 1564730 R KEGG: dvl:Dvul_1438 putative lipoprotein; putative lipoprotein complement(1564272..1564730) Desulfohalobium retbaense DSM 5692 8419167 YP_003198205.1 CDS Dret_1339 NC_013223.1 1564679 1567369 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1564679..1567369) Desulfohalobium retbaense DSM 5692 8419168 YP_003198206.1 CDS Dret_1340 NC_013223.1 1567493 1568602 R KEGG: dvl:Dvul_1436 tetratricopeptide domain- containing protein; hypothetical protein complement(1567493..1568602) Desulfohalobium retbaense DSM 5692 8419169 YP_003198207.1 CDS Dret_1341 NC_013223.1 1568663 1569088 R KEGG: dde:Dde_1974 hypothetical protein; hypothetical protein complement(1568663..1569088) Desulfohalobium retbaense DSM 5692 8419170 YP_003198208.1 CDS Dret_1342 NC_013223.1 1569104 1569595 R PFAM: histidine triad (HIT) protein; KEGG: dde:Dde_1973 HIT family protein; histidine triad (HIT) protein complement(1569104..1569595) Desulfohalobium retbaense DSM 5692 8419171 YP_003198209.1 CDS Dret_1343 NC_013223.1 1569748 1570488 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dal:Dalk_1257 ABC transporter related; ABC transporter complement(1569748..1570488) Desulfohalobium retbaense DSM 5692 8419172 YP_003198210.1 CDS Dret_1344 NC_013223.1 1570478 1571281 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_0861 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(1570478..1571281) Desulfohalobium retbaense DSM 5692 8419173 YP_003198211.1 CDS Dret_1345 NC_013223.1 1571378 1572112 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dvl:Dvul_1824 extracellular solute-binding protein; family 3 extracellular solute-binding protein complement(1571378..1572112) Desulfohalobium retbaense DSM 5692 8419174 YP_003198212.1 CDS Dret_1346 NC_013223.1 1572411 1575119 R PFAM: Polynucleotide adenylyltransferase region; phosphoesterase DHHA1; CBS domain containing protein; phosphoesterase RecJ domain protein; SMART: CBS domain containing protein; KEGG: dma:DMR_22030 nucleotidyltransferase; cyclic nucleotide-binding protein complement(1572411..1575119) Desulfohalobium retbaense DSM 5692 8419175 YP_003198213.1 CDS Dret_1347 NC_013223.1 1575116 1576036 R TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dvl:Dvul_1432 tyrosine recombinase XerD; tyrosine recombinase XerD complement(1575116..1576036) Desulfohalobium retbaense DSM 5692 8419176 YP_003198214.1 CDS Dret_1348 NC_013223.1 1576277 1576801 D KEGG: sat:SYN_02163 7,8-dihydro-6- hydroxymethylpterin-pyrophosphokinase (HppK); TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropter idinepyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1576277..1576801 Desulfohalobium retbaense DSM 5692 8419177 YP_003198215.1 CDS Dret_1349 NC_013223.1 1576832 1577098 D SMART: TRASH domain protein; KEGG: dma:DMR_21990 hypothetical protein; TRASH domain-containing protein 1576832..1577098 Desulfohalobium retbaense DSM 5692 8419178 YP_003198216.1 CDS Dret_1350 NC_013223.1 1577101 1577754 D KEGG: dde:Dde_1070 putative translaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase 1577101..1577754 Desulfohalobium retbaense DSM 5692 8419179 YP_003198217.1 CDS Dret_1351 NC_013223.1 1577999 1579222 D catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis; L,L-diaminopimelate aminotransferase 1577999..1579222 Desulfohalobium retbaense DSM 5692 8419180 YP_003198218.1 CDS Dret_1352 NC_013223.1 1579219 1579740 R hypothetical protein complement(1579219..1579740) Desulfohalobium retbaense DSM 5692 8419181 YP_003198219.1 CDS Dret_1353 NC_013223.1 1579936 1580535 R hypothetical protein complement(1579936..1580535) Desulfohalobium retbaense DSM 5692 8419182 YP_003198220.1 CDS Dret_1354 NC_013223.1 1580903 1583068 D KEGG: sde:Sde_2960 cellulose binding, type IV; hypothetical protein 1580903..1583068 Desulfohalobium retbaense DSM 5692 8419183 YP_003198221.1 CDS Dret_1355 NC_013223.1 1583267 1583983 R PFAM: MgtC/SapB transporter; KEGG: sfu:Sfum_3054 MgtC/SapB transporter; MgtC/SapB transporter complement(1583267..1583983) Desulfohalobium retbaense DSM 5692 8419184 YP_003198222.1 CDS Dret_1356 NC_013223.1 1584339 1584629 D hypothetical protein 1584339..1584629 Desulfohalobium retbaense DSM 5692 8419185 YP_003198223.1 CDS Dret_1357 NC_013223.1 1584756 1585787 R KEGG: dvl:Dvul_2803 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; peptide ABC transporter ATPase complement(1584756..1585787) Desulfohalobium retbaense DSM 5692 8419186 YP_003198224.1 CDS Dret_1358 NC_013223.1 1585797 1586765 R KEGG: dat:HRM2_49230 OppD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; peptide ABC transporter ATPase complement(1585797..1586765) Desulfohalobium retbaense DSM 5692 8419187 YP_003198225.1 CDS Dret_1359 NC_013223.1 1586768 1587694 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_1532 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1586768..1587694) Desulfohalobium retbaense DSM 5692 8419188 YP_003198226.1 CDS Dret_1360 NC_013223.1 1587691 1588665 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_1533 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1587691..1588665) Desulfohalobium retbaense DSM 5692 8419189 YP_003198227.1 CDS Dret_1361 NC_013223.1 1588922 1590472 R PFAM: extracellular solute-binding protein family 5; KEGG: dal:Dalk_1534 extracellular solute-binding protein family 5; family 5 extracellular solute-binding protein complement(1588922..1590472) Desulfohalobium retbaense DSM 5692 8419190 YP_003198228.1 CDS Dret_1362 NC_013223.1 1590793 1591038 D KEGG: dma:DMR_30610 hypothetical protein; hypothetical protein 1590793..1591038 Desulfohalobium retbaense DSM 5692 8419191 YP_003198229.1 CDS Dret_1363 NC_013223.1 1591043 1591942 D PFAM: PP-loop domain protein; KEGG: dvm:DvMF_2330 PP-loop domain protein; PP-loop domain-containing protein 1591043..1591942 Desulfohalobium retbaense DSM 5692 8419192 YP_003198230.1 CDS Dret_1364 NC_013223.1 1592076 1592825 R KEGG: ank:AnaeK_0840 leucyl/phenylalanyl- tRNA/protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase complement(1592076..1592825) Desulfohalobium retbaense DSM 5692 8419193 YP_003198231.1 CDS Dret_1365 NC_013223.1 1592831 1592944 R hypothetical protein complement(1592831..1592944) Desulfohalobium retbaense DSM 5692 8419194 YP_003198232.1 CDS Dret_1366 NC_013223.1 1593073 1595316 R KEGG: dma:DMR_23720 ATP-dependent Clp protease ATP- binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA complement(1593073..1595316) Desulfohalobium retbaense DSM 5692 8419195 YP_003198233.1 CDS Dret_1367 NC_013223.1 1595319 1595630 R PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: dma:DMR_23730 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS complement(1595319..1595630) Desulfohalobium retbaense DSM 5692 8419196 YP_003198234.1 CDS Dret_1368 NC_013223.1 1595627 1596241 R PFAM: adenylate cyclase; KEGG: dvm:DvMF_0460 adenylate cyclase; adenylate cyclase complement(1595627..1596241) Desulfohalobium retbaense DSM 5692 8419197 YP_003198235.1 CDS Dret_1369 NC_013223.1 1596873 1597478 R KEGG: amc:MADE_01157 hypothetical protein; hypothetical protein complement(1596873..1597478) Desulfohalobium retbaense DSM 5692 8419198 YP_003198236.1 CDS hisD NC_013223.1 1597877 1599187 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1597877..1599187 Desulfohalobium retbaense DSM 5692 8419199 YP_003198237.1 CDS Dret_1371 NC_013223.1 1599361 1600260 D KEGG: dvl:Dvul_1353 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 1599361..1600260 Desulfohalobium retbaense DSM 5692 8419200 YP_003198238.1 CDS Dret_1372 NC_013223.1 1600619 1601659 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1600619..1601659 Desulfohalobium retbaense DSM 5692 8419201 YP_003198239.1 CDS Dret_1373 NC_013223.1 1601679 1603262 D TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: dma:DMR_18190 L-aspartate oxidase; L-aspartate oxidase 1601679..1603262 Desulfohalobium retbaense DSM 5692 8419202 YP_003198240.1 CDS Dret_1374 NC_013223.1 1603594 1604169 R hypothetical protein complement(1603594..1604169) Desulfohalobium retbaense DSM 5692 8419203 YP_003198241.1 CDS Dret_1375 NC_013223.1 1604695 1605825 D KEGG: dma:DMR_46020 hypothetical protein; hypothetical protein 1604695..1605825 Desulfohalobium retbaense DSM 5692 8419204 YP_003198242.1 CDS Dret_1376 NC_013223.1 1605789 1607423 D PFAM: ferredoxin-dependent glutamate synthase; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_1724 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 1605789..1607423 Desulfohalobium retbaense DSM 5692 8419205 YP_003198243.1 CDS Dret_1377 NC_013223.1 1607492 1609873 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase alpha subunit domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1607492..1609873 Desulfohalobium retbaense DSM 5692 8419206 YP_003198244.1 CDS panF NC_013223.1 1611858 1613336 R mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter complement(1611858..1613336) Desulfohalobium retbaense DSM 5692 8419208 YP_003198245.1 CDS Dret_1380 NC_013223.1 1613339 1613641 R KEGG: dde:Dde_3322 membrane protein-like; hypothetical protein complement(1613339..1613641) Desulfohalobium retbaense DSM 5692 8419209 YP_003198246.1 CDS Dret_1381 NC_013223.1 1613833 1614522 R PFAM: protein of unknown function DUF45; KEGG: sfu:Sfum_1535 protein of unknown function DUF45; hypothetical protein complement(1613833..1614522) Desulfohalobium retbaense DSM 5692 8419210 YP_003198247.1 CDS Dret_1382 NC_013223.1 1614853 1615659 D KEGG: dat:HRM2_03970 MltB; protein MltB 1614853..1615659 Desulfohalobium retbaense DSM 5692 8419211 YP_003198248.1 CDS Dret_1383 NC_013223.1 1615634 1616515 R PFAM: transferase hexapeptide repeat containing protein; KEGG: dma:DMR_17130 serine acetyltransferase; Serine O-acetyltransferase complement(1615634..1616515) Desulfohalobium retbaense DSM 5692 8419212 YP_003198249.1 CDS Dret_1384 NC_013223.1 1616734 1618425 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1616734..1618425 Desulfohalobium retbaense DSM 5692 8419213 YP_003198250.1 CDS Dret_1385 NC_013223.1 1618746 1619681 R TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dma:DMR_17120 cysteine synthase A; cysteine synthase complement(1618746..1619681) Desulfohalobium retbaense DSM 5692 8419214 YP_003198251.1 CDS Dret_1386 NC_013223.1 1619781 1620737 R hypothetical protein complement(1619781..1620737) Desulfohalobium retbaense DSM 5692 8419215 YP_003198252.1 CDS rnc NC_013223.1 1620984 1621697 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(1620984..1621697) Desulfohalobium retbaense DSM 5692 8419216 YP_003198253.1 CDS Dret_1388 NC_013223.1 1621987 1622676 D PFAM: shikimate kinase; KEGG: dma:DMR_27440 shikimate kinase II; shikimate kinase 1621987..1622676 Desulfohalobium retbaense DSM 5692 8419217 YP_003198254.1 CDS Dret_1389 NC_013223.1 1622669 1623472 D PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dvl:Dvul_1712 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1622669..1623472 Desulfohalobium retbaense DSM 5692 8419218 YP_003198255.1 CDS Dret_1390 NC_013223.1 1623784 1624887 R TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP- binding protein HSR1-related; KEGG: dde:Dde_1698 GTP-dependent nucleic acid- binding protein EngD; GTP-binding protein YchF complement(1623784..1624887) Desulfohalobium retbaense DSM 5692 8419219 YP_003198256.1 CDS Dret_1391 NC_013223.1 1625421 1625819 R PFAM: DnaJ homologue, subfamily C, member 28; KEGG: dvm:DvMF_2043 hypothetical protein; DnaJ-like protein complement(1625421..1625819) Desulfohalobium retbaense DSM 5692 8419220 YP_003198257.1 CDS Dret_1392 NC_013223.1 1625880 1626224 R TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dma:DMR_13690 hypothetical protein; anti-sigma-factor antagonist complement(1625880..1626224) Desulfohalobium retbaense DSM 5692 8419221 YP_003198258.1 CDS Dret_1393 NC_013223.1 1626161 1626640 R KEGG: dma:DMR_13680 hypothetical protein; putative anti-sigma regulatory factor complement(1626161..1626640) Desulfohalobium retbaense DSM 5692 8419222 YP_003198259.1 CDS Dret_1394 NC_013223.1 1626802 1627269 R TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: dvl:Dvul_1627 D-tyrosyl-tRNA(Tyr) deacylase; D-tyrosyl-tRNA(Tyr) deacylase complement(1626802..1627269) Desulfohalobium retbaense DSM 5692 8419223 YP_003198260.1 CDS Dret_1395 NC_013223.1 1627269 1627661 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: dvl:Dvul_1716 putative 6-pyruvoyl tetrahydropterin synthase; 6-pyruvoyl-tetrahydropterin synthase complement(1627269..1627661) Desulfohalobium retbaense DSM 5692 8419224 YP_003198261.1 CDS Dret_1396 NC_013223.1 1627732 1631211 R KEGG: dvm:DvMF_0130 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha complement(1627732..1631211) Desulfohalobium retbaense DSM 5692 8419225 YP_003198262.1 CDS Dret_1397 NC_013223.1 1631429 1632430 R KEGG: dvm:DvMF_0012 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I complement(1631429..1632430) Desulfohalobium retbaense DSM 5692 8419226 YP_003198263.1 CDS Dret_1398 NC_013223.1 1632571 1633494 R KEGG: dde:Dde_2341 fructose-bisphosphate aldolase; TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; fructose-1,6-bisphosphate aldolase complement(1632571..1633494) Desulfohalobium retbaense DSM 5692 8419227 YP_003198264.1 CDS Dret_1399 NC_013223.1 1633801 1634580 R KEGG: dma:DMR_39830 5'-nucleotidase SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE complement(1633801..1634580) Desulfohalobium retbaense DSM 5692 8419228 YP_003198265.1 CDS Dret_1400 NC_013223.1 1634565 1635149 R PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: dvl:Dvul_1221 pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate/ketoisovalerate oxidoreductase complement(1634565..1635149) Desulfohalobium retbaense DSM 5692 8419229 YP_003198266.1 CDS Dret_1401 NC_013223.1 1635146 1635979 R catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta complement(1635146..1635979) Desulfohalobium retbaense DSM 5692 8419230 YP_003198267.1 CDS Dret_1402 NC_013223.1 1636203 1637351 R PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dvm:DvMF_0603 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha complement(1636203..1637351) Desulfohalobium retbaense DSM 5692 8419231 YP_003198268.1 CDS Dret_1403 NC_013223.1 1637511 1637789 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_1224 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin complement(1637511..1637789) Desulfohalobium retbaense DSM 5692 8419232 YP_003198269.1 CDS Dret_1404 NC_013223.1 1637872 1638903 D KEGG: dma:DMR_39820 putative nucleic acid-binding protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 1637872..1638903 Desulfohalobium retbaense DSM 5692 8419233 YP_003198270.1 CDS Dret_1405 NC_013223.1 1638879 1639526 D KEGG: dde:Dde_2338 thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase 1638879..1639526 Desulfohalobium retbaense DSM 5692 8419234 YP_003198271.1 CDS Dret_1406 NC_013223.1 1639708 1639962 D PFAM: glutaredoxin; KEGG: dma:DMR_39790 glutaredoxin; glutaredoxin 1639708..1639962 Desulfohalobium retbaense DSM 5692 8419235 YP_003198272.1 CDS Dret_1407 NC_013223.1 1639959 1640318 D KEGG: sfu:Sfum_0349 hypothetical protein; hypothetical protein 1639959..1640318 Desulfohalobium retbaense DSM 5692 8419236 YP_003198273.1 CDS Dret_1408 NC_013223.1 1640430 1640651 D PFAM: nitrogen-fixing NifU domain protein; KEGG: dvm:DvMF_0997 nitrogen-fixing NifU domain protein; nitrogen-fixing NifU domain-containing protein 1640430..1640651 Desulfohalobium retbaense DSM 5692 8419237 YP_003198274.1 CDS Dret_1409 NC_013223.1 1641040 1642431 D TIGRFAM: glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: dma:DMR_39860 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase 1641040..1642431 Desulfohalobium retbaense DSM 5692 8419238 YP_003198275.1 CDS Dret_1410 NC_013223.1 1642582 1642779 R TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: dde:Dde_2425 50S ribosomal protein L28; 50S ribosomal protein L28 complement(1642582..1642779) Desulfohalobium retbaense DSM 5692 8419239 YP_003198276.1 CDS Dret_1411 NC_013223.1 1643014 1643547 D PFAM: protein of unknown function DUF177; KEGG: dvl:Dvul_1847 hypothetical protein; hypothetical protein 1643014..1643547 Desulfohalobium retbaense DSM 5692 8419240 YP_003198277.1 CDS Dret_1412 NC_013223.1 1643614 1643802 D TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: dma:DMR_39930 50S ribosomal protein L32; 50S ribosomal protein L32 1643614..1643802 Desulfohalobium retbaense DSM 5692 8419241 YP_003198278.1 CDS Dret_1413 NC_013223.1 1643789 1644877 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1643789..1644877 Desulfohalobium retbaense DSM 5692 8419242 YP_003198279.1 CDS Dret_1414 NC_013223.1 1645047 1646048 D KEGG: dma:DMR_39950 3-oxoacyl-[acyl-carrier- protein] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III; 3-oxoacyl-ACP synthase 1645047..1646048 Desulfohalobium retbaense DSM 5692 8419243 YP_003198280.1 CDS Dret_1415 NC_013223.1 1646202 1646948 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dma:DMR_39960 3-oxoacyl-[acyl-carrier- protein] reductase; 3-oxoacyl-ACP reductase 1646202..1646948 Desulfohalobium retbaense DSM 5692 8419244 YP_003198281.1 CDS Dret_1416 NC_013223.1 1647203 1647433 D TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: dvl:Dvul_1852 acyl carrier protein; acyl carrier protein 1647203..1647433 Desulfohalobium retbaense DSM 5692 8419245 YP_003198282.1 CDS Dret_1417 NC_013223.1 1647697 1648944 D TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: dvm:DvMF_3098 3-oxoacyl-(acyl-carrier- protein) synthase 2; 3-oxoacyl-ACP synthase 1647697..1648944 Desulfohalobium retbaense DSM 5692 8419246 YP_003198283.1 CDS glyA NC_013223.1 1648955 1650217 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1648955..1650217 Desulfohalobium retbaense DSM 5692 8419247 YP_003198284.1 CDS Dret_1419 NC_013223.1 1650214 1650675 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dma:DMR_05630 putative dCMP deaminase; zinc-binding CMP/dCMP deaminase 1650214..1650675 Desulfohalobium retbaense DSM 5692 8419248 YP_003198285.1 CDS Dret_1420 NC_013223.1 1650686 1651840 D KEGG: dde:Dde_2434 5-amino-6-(5- phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; riboflavin biosynthesis protein RibD 1650686..1651840 Desulfohalobium retbaense DSM 5692 8419249 YP_003198286.1 CDS Dret_1421 NC_013223.1 1651859 1652521 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1651859..1652521 Desulfohalobium retbaense DSM 5692 8419250 YP_003198287.1 CDS Dret_1422 NC_013223.1 1652631 1653848 D TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2- butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: dde:Dde_2436 GTP cyclohydrolase II / 3,4- dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II 1652631..1653848 Desulfohalobium retbaense DSM 5692 8419251 YP_003198288.1 CDS ribH NC_013223.1 1653987 1654457 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1653987..1654457 Desulfohalobium retbaense DSM 5692 8419252 YP_003198289.1 CDS Dret_1424 NC_013223.1 1654465 1654908 D TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: dde:Dde_2438 transcription antitermination factor NusB; NusB antitermination factor 1654465..1654908 Desulfohalobium retbaense DSM 5692 8419253 YP_003198290.1 CDS Dret_1425 NC_013223.1 1654989 1657484 D TIGRFAM: leucyl-tRNA synthetase; KEGG: dde:Dde_2439 leucyl-tRNA synthetase; leucyl-tRNA synthetase 1654989..1657484 Desulfohalobium retbaense DSM 5692 8419254 YP_003198291.1 CDS Dret_1426 NC_013223.1 1657468 1657977 D KEGG: dvm:DvMF_3089 putative lipoprotein; putative lipoprotein 1657468..1657977 Desulfohalobium retbaense DSM 5692 8419255 YP_003198292.1 CDS Dret_1427 NC_013223.1 1658581 1659549 D PFAM: DNA polymerase III delta; KEGG: dma:DMR_44680 hypothetical protein; DNA polymerase III delta 1658581..1659549 Desulfohalobium retbaense DSM 5692 8419256 YP_003198293.1 CDS Dret_1428 NC_013223.1 1659653 1660339 D TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: dma:DMR_44670 DNA repair protein RadC; DNA repair protein RadC 1659653..1660339 Desulfohalobium retbaense DSM 5692 8419257 YP_003198294.1 CDS Dret_1429 NC_013223.1 1660623 1663100 D KEGG: dma:DMR_44650 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; AAA ATPase; ATP-dependent protease La 1660623..1663100 Desulfohalobium retbaense DSM 5692 8419258 YP_003198295.1 CDS Dret_1430 NC_013223.1 1663358 1664188 D PFAM: beta-lactamase domain protein; KEGG: dma:DMR_43120 hypothetical protein; beta-lactamase domain-containing protein 1663358..1664188 Desulfohalobium retbaense DSM 5692 8419259 YP_003198296.1 CDS Dret_1431 NC_013223.1 1664716 1665141 D KEGG: dal:Dalk_4092 hypothetical protein; hypothetical protein 1664716..1665141 Desulfohalobium retbaense DSM 5692 8419260 YP_003198297.1 CDS Dret_1432 NC_013223.1 1665319 1666026 D hypothetical protein 1665319..1666026 Desulfohalobium retbaense DSM 5692 8419261 YP_003198298.1 CDS Dret_1433 NC_013223.1 1666037 1667200 R KEGG: cvi:CV_0812 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase complement(1666037..1667200) Desulfohalobium retbaense DSM 5692 8419262 YP_003198299.1 CDS Dret_1434 NC_013223.1 1667300 1668508 R PFAM: domain of unknown function DUF1745; FIST C domain; KEGG: oca:OCAR_7506 hypothetical protein; hypothetical protein complement(1667300..1668508) Desulfohalobium retbaense DSM 5692 8419263 YP_003198300.1 CDS Dret_1435 NC_013223.1 1668939 1669307 D PFAM: Cupin 2 conserved barrel domain protein; Cupin domain protein; KEGG: tdn:Suden_0432 cupin region; cupin 2 barrel domain-containing protein 1668939..1669307 Desulfohalobium retbaense DSM 5692 8419264 YP_003198301.1 CDS Dret_1436 NC_013223.1 1669472 1670137 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bph:Bphy_0987 ABC transporter related; ABC transporter 1669472..1670137 Desulfohalobium retbaense DSM 5692 8419265 YP_003198302.1 CDS Dret_1437 NC_013223.1 1670134 1670928 D PFAM: conserved hypothetical protein; KEGG: bmj:BMULJ_01745 putative ABC transport system permease protein; hypothetical protein 1670134..1670928 Desulfohalobium retbaense DSM 5692 8419266 YP_003198303.1 CDS Dret_1438 NC_013223.1 1671123 1671479 D PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: hch:HCH_00672 FOG: CheY-like receiver; response regulator receiver protein 1671123..1671479 Desulfohalobium retbaense DSM 5692 8419267 YP_003198304.1 CDS Dret_1439 NC_013223.1 1671488 1672111 D PFAM: CheC domain protein; KEGG: ppd:Ppro_0086 CheC, inhibitor of MCP methylation; CheC, inhibitor of MCP methylation 1671488..1672111 Desulfohalobium retbaense DSM 5692 8419268 YP_003198305.1 CDS Dret_1440 NC_013223.1 1672227 1673174 D KEGG: pha:PSHAa1211 sensory box/GGDEF protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1672227..1673174 Desulfohalobium retbaense DSM 5692 8419269 YP_003198306.1 CDS Dret_1441 NC_013223.1 1673184 1673660 R PFAM: protein of unknown function DUF1499; KEGG: gsu:GSU2319 hypothetical protein; hypothetical protein complement(1673184..1673660) Desulfohalobium retbaense DSM 5692 8419270 YP_003198307.1 CDS Dret_1442 NC_013223.1 1673663 1674700 R PFAM: ADP-ribosylation/Crystallin J1; KEGG: net:Neut_2145 ADP-ribosylation/crystallin J1; ADP-ribosylation/Crystallin J1 complement(1673663..1674700) Desulfohalobium retbaense DSM 5692 8419271 YP_003198308.1 CDS Dret_1443 NC_013223.1 1675194 1675571 D TIGRFAM: translation initiation factor SUI1; PFAM: translation initiation factor SUI1; KEGG: pca:Pcar_1480 translation initiation factor Sui1; translation initiation factor SUI1 1675194..1675571 Desulfohalobium retbaense DSM 5692 8419272 YP_003198309.1 CDS greA NC_013223.1 1675742 1676227 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(1675742..1676227) Desulfohalobium retbaense DSM 5692 8419273 YP_003198310.1 CDS Dret_1445 NC_013223.1 1676321 1676695 R hypothetical protein complement(1676321..1676695) Desulfohalobium retbaense DSM 5692 8419274 YP_003198311.1 CDS Dret_1446 NC_013223.1 1676959 1678110 R PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron- sulfur binding domain protein; KEGG: pca:Pcar_1733 aldo/keto reductase family oxidoreductase; aldo/keto reductase complement(1676959..1678110) Desulfohalobium retbaense DSM 5692 8419275 YP_003198312.1 CDS Dret_1447 NC_013223.1 1678266 1679372 R PFAM: aminotransferase class I and II; aminotransferase class V; KEGG: mxa:MXAN_1407 aminotransferase, classes I and II; class I and II aminotransferase complement(1678266..1679372) Desulfohalobium retbaense DSM 5692 8419276 YP_003198313.1 CDS Dret_1448 NC_013223.1 1679418 1679699 R hypothetical protein complement(1679418..1679699) Desulfohalobium retbaense DSM 5692 8419277 YP_003198314.1 CDS Dret_1449 NC_013223.1 1679714 1680232 D hypothetical protein 1679714..1680232 Desulfohalobium retbaense DSM 5692 8419278 YP_003198315.1 CDS Dret_1450 NC_013223.1 1680371 1680883 D hypothetical protein 1680371..1680883 Desulfohalobium retbaense DSM 5692 8419279 YP_003198316.1 CDS Dret_1451 NC_013223.1 1680924 1681763 R KEGG: avn:Avin_41440 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase complement(1680924..1681763) Desulfohalobium retbaense DSM 5692 8419280 YP_003198317.1 CDS Dret_1452 NC_013223.1 1682067 1682540 D PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: dma:DMR_01880 putative arsenate reductase; protein-tyrosine phosphatase 1682067..1682540 Desulfohalobium retbaense DSM 5692 8419281 YP_003198318.1 CDS Dret_1453 NC_013223.1 1682801 1683901 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dat:HRM2_40940 UbiE5; type 11 methyltransferase 1682801..1683901 Desulfohalobium retbaense DSM 5692 8419282 YP_003198319.1 CDS Dret_1454 NC_013223.1 1683911 1684009 R hypothetical protein complement(1683911..1684009) Desulfohalobium retbaense DSM 5692 8419283 YP_003198320.1 CDS Dret_1455 NC_013223.1 1684050 1684652 R TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; NADPH- dependent FMN reductase; KEGG: noc:Noc_2414 flavoprotein WrbA; flavoprotein WrbA complement(1684050..1684652) Desulfohalobium retbaense DSM 5692 8419284 YP_003198321.1 CDS Dret_1456 NC_013223.1 1684929 1685675 R TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dvl:Dvul_0454 hemolysin A; hemolysin A complement(1684929..1685675) Desulfohalobium retbaense DSM 5692 8419285 YP_003198322.1 CDS leuD NC_013223.1 1685946 1686449 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase small subunit complement(1685946..1686449) Desulfohalobium retbaense DSM 5692 8419286 YP_003198323.1 CDS Dret_1458 NC_013223.1 1686621 1687880 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit complement(1686621..1687880) Desulfohalobium retbaense DSM 5692 8419287 YP_003198324.1 CDS Dret_1459 NC_013223.1 1687865 1689400 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(1687865..1689400) Desulfohalobium retbaense DSM 5692 8419288 YP_003198325.1 CDS Dret_1460 NC_013223.1 1689617 1690384 R TIGRFAM: CDP-diacylglycerol/serine O- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dvl:Dvul_0392 CDP-diacylglycerol--serine O- phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(1689617..1690384) Desulfohalobium retbaense DSM 5692 8419289 YP_003198326.1 CDS Dret_1461 NC_013223.1 1690463 1691104 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(1690463..1691104) Desulfohalobium retbaense DSM 5692 8419290 YP_003198327.1 CDS Dret_1462 NC_013223.1 1691207 1692361 R TIGRFAM: geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; KEGG: dma:DMR_43240 geranylgeranyl reductase; geranylgeranyl reductase complement(1691207..1692361) Desulfohalobium retbaense DSM 5692 8419291 YP_003198328.1 CDS Dret_1463 NC_013223.1 1692664 1693344 D TIGRFAM: siroheme synthase; KEGG: dvm:DvMF_0298 siroheme synthase; siroheme synthase 1692664..1693344 Desulfohalobium retbaense DSM 5692 8419292 YP_003198329.1 CDS Dret_1464 NC_013223.1 1693322 1694149 D PFAM: cytochrome c assembly protein; KEGG: dma:DMR_16430 putative cytochrome c assembly protein; cytochrome c assembly protein 1693322..1694149 Desulfohalobium retbaense DSM 5692 8419293 YP_003198330.1 CDS hemA NC_013223.1 1694251 1695582 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1694251..1695582 Desulfohalobium retbaense DSM 5692 8419294 YP_003198331.1 CDS Dret_1466 NC_013223.1 1695582 1695917 D KEGG: dma:DMR_16410 hypothetical protein; hypothetical protein 1695582..1695917 Desulfohalobium retbaense DSM 5692 8419295 YP_003198332.1 CDS Dret_1467 NC_013223.1 1695924 1696940 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: dma:DMR_16400 tRNA(Ile)-lysidine synthase; tRNA(Ile)-lysidine synthetase 1695924..1696940 Desulfohalobium retbaense DSM 5692 8419296 YP_003198333.1 CDS Dret_1468 NC_013223.1 1696925 1697620 D KEGG: eca:ECA3961 hypothetical protein; anti-ECFsigma factor ChrR 1696925..1697620 Desulfohalobium retbaense DSM 5692 8419297 YP_003198334.1 CDS Dret_1469 NC_013223.1 1698229 1698552 R PFAM: branched-chain amino acid transport; KEGG: dvu:DVU0032 hypothetical protein; branched-chain amino acid transport complement(1698229..1698552) Desulfohalobium retbaense DSM 5692 8419298 YP_003198335.1 CDS Dret_1470 NC_013223.1 1698528 1699271 R PFAM: AzlC family protein; KEGG: dps:DP2465 branched chain amino acid ABC transporter permease; AzlC family protein complement(1698528..1699271) Desulfohalobium retbaense DSM 5692 8419299 YP_003198336.1 CDS Dret_1471 NC_013223.1 1699663 1701081 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: dde:Dde_0157 GntR family transcriptional regulator; GntR family transcriptional regulator 1699663..1701081 Desulfohalobium retbaense DSM 5692 8419300 YP_003198337.1 CDS Dret_1472 NC_013223.1 1701352 1702194 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dol:Dole_2763 substrate-binding region of ABC- type glycine betaine transport system; glycine/betaine ABC transporter substrate-binding protein 1701352..1702194 Desulfohalobium retbaense DSM 5692 8419301 YP_003198338.1 CDS Dret_1473 NC_013223.1 1702497 1704506 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pca:Pcar_2397 TonB-dependent receptor; TonB-dependent receptor 1702497..1704506 Desulfohalobium retbaense DSM 5692 8419302 YP_003198339.1 CDS Dret_1474 NC_013223.1 1704512 1705942 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_2396 ABC-type transport system, putative ATPase component; ABC transporter 1704512..1705942 Desulfohalobium retbaense DSM 5692 8419303 YP_003198340.1 CDS Dret_1475 NC_013223.1 1705926 1706597 D PFAM: cobalt transport protein; KEGG: pca:Pcar_2395 ABC-type transport system, permease component; cobalt transport protein 1705926..1706597 Desulfohalobium retbaense DSM 5692 8419304 YP_003198341.1 CDS Dret_1476 NC_013223.1 1706590 1707135 D KEGG: ppd:Ppro_1538 hypothetical protein; hypothetical protein 1706590..1707135 Desulfohalobium retbaense DSM 5692 8419305 YP_003198342.1 CDS Dret_1477 NC_013223.1 1707151 1707885 D KEGG: sfu:Sfum_0275 conserved hypothetical cytosolic protein; hypothetical protein 1707151..1707885 Desulfohalobium retbaense DSM 5692 8419306 YP_003198343.1 CDS Dret_1478 NC_013223.1 1707973 1708380 R KEGG: dat:HRM2_13500 hypothetical protein; hypothetical protein complement(1707973..1708380) Desulfohalobium retbaense DSM 5692 8419307 YP_003198344.1 CDS Dret_1479 NC_013223.1 1708523 1709149 R hypothetical protein complement(1708523..1709149) Desulfohalobium retbaense DSM 5692 8419308 YP_003198345.1 CDS Dret_1480 NC_013223.1 1709221 1710432 D PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: glo:Glov_2618 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 1709221..1710432 Desulfohalobium retbaense DSM 5692 8419309 YP_003198346.1 CDS Dret_1482 NC_013223.1 1711303 1711767 R PFAM: GCN5-related N-acetyltransferase; KEGG: ank:AnaeK_1081 GCN5-related N- acetyltransferase; N-acetyltransferase GCN5 complement(1711303..1711767) Desulfohalobium retbaense DSM 5692 8419311 YP_003198347.1 CDS Dret_1483 NC_013223.1 1712127 1713464 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: dde:Dde_1846 amino acid carrier protein; amino acid carrier protein complement(1712127..1713464) Desulfohalobium retbaense DSM 5692 8419312 YP_003198348.1 CDS Dret_1484 NC_013223.1 1713878 1715050 R KEGG: dol:Dole_0057 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase complement(1713878..1715050) Desulfohalobium retbaense DSM 5692 8419313 YP_003198349.1 CDS Dret_1485 NC_013223.1 1715153 1716265 R TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: dma:DMR_45640 alanine dehydrogenase; alanine dehydrogenase complement(1715153..1716265) Desulfohalobium retbaense DSM 5692 8419314 YP_003198350.1 CDS Dret_1486 NC_013223.1 1716686 1718263 R KEGG: dde:Dde_1552 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; amino acid-binding ACT domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: AAA ATPase; PAS domain containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator complement(1716686..1718263) Desulfohalobium retbaense DSM 5692 8419315 YP_003198351.1 CDS Dret_1487 NC_013223.1 1718426 1719400 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0800 hypothetical protein; 4Fe-4S ferredoxin complement(1718426..1719400) Desulfohalobium retbaense DSM 5692 8419316 YP_003198352.1 CDS Dret_1488 NC_013223.1 1719981 1720844 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: aci:ACIAD3340 putative hydrolase; Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase 1719981..1720844 Desulfohalobium retbaense DSM 5692 8419317 YP_003198353.1 CDS Dret_1489 NC_013223.1 1721209 1721469 R PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1; RNP-1 like RNA-binding protein complement(1721209..1721469) Desulfohalobium retbaense DSM 5692 8419318 YP_003198354.1 CDS Dret_1490 NC_013223.1 1722136 1723743 R TIGRFAM: peptide chain release factor 3; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: dma:DMR_43370 peptide chain release factor 3; peptide chain release factor 3 complement(1722136..1723743) Desulfohalobium retbaense DSM 5692 8419319 YP_003198355.1 CDS Dret_1491 NC_013223.1 1724206 1725615 D hypothetical protein 1724206..1725615 Desulfohalobium retbaense DSM 5692 8419320 YP_003198356.1 CDS Dret_1492 NC_013223.1 1725608 1726405 D KEGG: shn:Shewana3_2096 thioredoxin-disulfide reductase; hypothetical protein 1725608..1726405 Desulfohalobium retbaense DSM 5692 8419321 YP_003198357.1 CDS Dret_1493 NC_013223.1 1726392 1729991 D PFAM: SMC domain protein; KEGG: CG3493 gene product from transcript CG3493-RA; SMC domain-containing protein 1726392..1729991 Desulfohalobium retbaense DSM 5692 8419322 YP_003198358.1 CDS Dret_1494 NC_013223.1 1729988 1730998 D KEGG: spq:SPAB_01119 hypothetical protein; hypothetical protein 1729988..1730998 Desulfohalobium retbaense DSM 5692 8419323 YP_003198359.1 CDS Dret_1495 NC_013223.1 1731530 1732708 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dal:Dalk_2354 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1731530..1732708 Desulfohalobium retbaense DSM 5692 8419324 YP_003198360.1 CDS Dret_1496 NC_013223.1 1733291 1734628 R PFAM: transposase IS4 family protein; KEGG: maq:Maqu_0982 transposase, IS4 family protein; transposase IS4 family protein complement(1733291..1734628) Desulfohalobium retbaense DSM 5692 8419325 YP_003198361.1 CDS Dret_1497 NC_013223.1 1734780 1736312 R KEGG: mca:MCA1673 sensory box protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase complement(1734780..1736312) Desulfohalobium retbaense DSM 5692 8419326 YP_003198362.1 CDS Dret_1498 NC_013223.1 1736803 1738269 R PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; FAD dependent oxidoreductase; HI0933 family protein; KEGG: dal:Dalk_3001 pyridine nucleotide-disulphide oxidoreductase dimerisation region; pyridine nucleotide-disulfide oxidoreductase dimerisation region complement(1736803..1738269) Desulfohalobium retbaense DSM 5692 8419327 YP_003198363.1 CDS Dret_1499 NC_013223.1 1738313 1738651 R KEGG: tgr:Tgr7_2386 hypothetical protein; hypothetical protein complement(1738313..1738651) Desulfohalobium retbaense DSM 5692 8419328 YP_003198364.1 CDS Dret_1500 NC_013223.1 1739530 1740288 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pca:Pcar_0791 putative DNA replication factor; IstB domain-containing protein ATP-binding protein complement(1739530..1740288) Desulfohalobium retbaense DSM 5692 8419329 YP_003198365.1 CDS Dret_1501 NC_013223.1 1740285 1741784 R KEGG: dat:HRM2_39510 IstA2; IstA2 complement(1740285..1741784) Desulfohalobium retbaense DSM 5692 8419330 YP_003198366.1 CDS Dret_1502 NC_013223.1 1741882 1742517 R KEGG: oan:Oant_4651 transposase IS116/IS110/IS902 family protein; hypothetical protein complement(1741882..1742517) Desulfohalobium retbaense DSM 5692 8419331 YP_003198367.1 CDS Dret_1503 NC_013223.1 1742813 1744162 R KEGG: dal:Dalk_2259 PAS modulated sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: AAA ATPase; PAS domain containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator complement(1742813..1744162) Desulfohalobium retbaense DSM 5692 8419332 YP_003198368.1 CDS Dret_1504 NC_013223.1 1744540 1745610 D KEGG: sat:SYN_00147 putative cytoplasmic protein; hypothetical protein 1744540..1745610 Desulfohalobium retbaense DSM 5692 8419333 YP_003198369.1 CDS Dret_1505 NC_013223.1 1746248 1748623 R PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_1166 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1746248..1748623) Desulfohalobium retbaense DSM 5692 8419334 YP_003198370.1 CDS Dret_1506 NC_013223.1 1749615 1751072 D PFAM: Lytic transglycosylase catalytic; extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: pca:Pcar_0524 periplasmic binding transport protein/transglycosylase; Lytic transglycosylase catalytic 1749615..1751072 Desulfohalobium retbaense DSM 5692 8419335 YP_003198371.1 CDS Dret_1507 NC_013223.1 1751808 1752506 D PFAM: protein of unknown function DUF554; KEGG: dvm:DvMF_3049 protein of unknown function DUF554; hypothetical protein 1751808..1752506 Desulfohalobium retbaense DSM 5692 8419336 YP_003198372.1 CDS Dret_1508 NC_013223.1 1752828 1753229 D PFAM: protein of unknown function DUF1232; KEGG: pcr:Pcryo_0858 hypothetical protein; hypothetical protein 1752828..1753229 Desulfohalobium retbaense DSM 5692 8419337 YP_003198373.1 CDS Dret_1509 NC_013223.1 1753369 1753575 D hypothetical protein 1753369..1753575 Desulfohalobium retbaense DSM 5692 8419338 YP_003198374.1 CDS Dret_1510 NC_013223.1 1753516 1755261 R KEGG: tbd:Tbd_2634 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; GAF domain protein; PAS domain containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase complement(1753516..1755261) Desulfohalobium retbaense DSM 5692 8419339 YP_003198375.1 CDS Dret_1511 NC_013223.1 1755437 1755922 D KEGG: similar to transmembrane protein 132E; transmembrane protein 132E-like protein 1755437..1755922 Desulfohalobium retbaense DSM 5692 8419340 YP_003198376.1 CDS Dret_1512 NC_013223.1 1756071 1757528 D PFAM: protein of unknown function UPF0061; KEGG: nwi:Nwi_0945 hypothetical protein; hypothetical protein 1756071..1757528 Desulfohalobium retbaense DSM 5692 8419341 YP_003198377.1 CDS Dret_1513 NC_013223.1 1757698 1757868 D hypothetical protein 1757698..1757868 Desulfohalobium retbaense DSM 5692 8419342 YP_003198378.1 CDS Dret_1514 NC_013223.1 1758023 1758862 D KEGG: pin:Ping_1452 RNA-binding S1 domain- containing protein; RNA-binding S1 domain-containing protein 1758023..1758862 Desulfohalobium retbaense DSM 5692 8419343 YP_003198379.1 CDS Dret_1515 NC_013223.1 1759184 1759849 R KEGG: sat:SYN_00670 hypothetical protein; hypothetical protein complement(1759184..1759849) Desulfohalobium retbaense DSM 5692 8419344 YP_003198380.1 CDS Dret_1516 NC_013223.1 1760034 1760900 D KEGG: hha:Hhal_0210 hypothetical protein; hypothetical protein 1760034..1760900 Desulfohalobium retbaense DSM 5692 8419345 YP_003198381.1 CDS Dret_1517 NC_013223.1 1760839 1761966 R KEGG: hha:Hhal_0209 endoglucanase; endoglucanase complement(1760839..1761966) Desulfohalobium retbaense DSM 5692 8419346 YP_003198382.1 CDS Dret_1518 NC_013223.1 1761972 1763615 R PFAM: glycosyl transferase family 2; KEGG: hha:Hhal_0208 cellulose synthase (UDP- forming); family 2 glycosyl transferase complement(1761972..1763615) Desulfohalobium retbaense DSM 5692 8419347 YP_003198383.1 CDS Dret_1519 NC_013223.1 1763631 1765376 R KEGG: hha:Hhal_0207 TPR repeat-containing protein; hypothetical protein complement(1763631..1765376) Desulfohalobium retbaense DSM 5692 8419348 YP_003198384.1 CDS Dret_1520 NC_013223.1 1765383 1766075 R SMART: Tetratricopeptide repeat; KEGG: hha:Hhal_0206 TPR repeat-containing protein; hypothetical protein complement(1765383..1766075) Desulfohalobium retbaense DSM 5692 8419349 YP_003198385.1 CDS Dret_1521 NC_013223.1 1766072 1766590 R KEGG: bac:BamMC406_1293 cellulose synthase domain- containing protein; hypothetical protein complement(1766072..1766590) Desulfohalobium retbaense DSM 5692 8419350 YP_003198386.1 CDS Dret_1522 NC_013223.1 1766587 1767030 R KEGG: dat:HRM2_43520 RsbW; putative anti-sigma regulatory factor complement(1766587..1767030) Desulfohalobium retbaense DSM 5692 8419351 YP_003198387.1 CDS Dret_1523 NC_013223.1 1767023 1767382 R TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: kpu:KP1_1977 probable anti-sigma factor antagonist; anti-sigma-factor antagonist complement(1767023..1767382) Desulfohalobium retbaense DSM 5692 8419352 YP_003198388.1 CDS Dret_1524 NC_013223.1 1767581 1768810 R KEGG: sat:SYN_00230 response regulator receiver domain-containing protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; PAS domain containing protein; putative PAS/PAC sensor protein complement(1767581..1768810) Desulfohalobium retbaense DSM 5692 8419353 YP_003198389.1 CDS Dret_1525 NC_013223.1 1768821 1769468 D hypothetical protein 1768821..1769468 Desulfohalobium retbaense DSM 5692 8419354 YP_003198390.1 CDS Dret_1526 NC_013223.1 1769556 1770053 R PFAM: TspO/MBR family protein; KEGG: net:Neut_1064 TspO and MBR like proteins; TspO and MBR-like protein complement(1769556..1770053) Desulfohalobium retbaense DSM 5692 8419355 YP_003198391.1 CDS Dret_1527 NC_013223.1 1770445 1770720 R hypothetical protein complement(1770445..1770720) Desulfohalobium retbaense DSM 5692 8419356 YP_003198392.1 CDS Dret_1528 NC_013223.1 1771136 1772101 R KEGG: hch:HCH_03148 response regulator; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase complement(1771136..1772101) Desulfohalobium retbaense DSM 5692 8419357 YP_003198393.1 CDS Dret_1529 NC_013223.1 1772088 1773206 R PFAM: cobalamin B12-binding domain protein; KEGG: sfu:Sfum_3258 cobalamin B12-binding domain protein; cobalamin B12-binding domain-containing protein complement(1772088..1773206) Desulfohalobium retbaense DSM 5692 8419358 YP_003198394.1 CDS Dret_1530 NC_013223.1 1773246 1773503 D hypothetical protein 1773246..1773503 Desulfohalobium retbaense DSM 5692 8419359 YP_003198395.1 CDS Dret_1531 NC_013223.1 1774073 1774717 D hypothetical protein 1774073..1774717 Desulfohalobium retbaense DSM 5692 8419360 YP_003198396.1 CDS Dret_1532 NC_013223.1 1774754 1775266 R KEGG: rle:RL4488 hypothetical protein; hypothetical protein complement(1774754..1775266) Desulfohalobium retbaense DSM 5692 8419361 YP_003198397.1 CDS Dret_1533 NC_013223.1 1775320 1775421 R hypothetical protein complement(1775320..1775421) Desulfohalobium retbaense DSM 5692 8419362 YP_003198398.1 CDS Dret_1534 NC_013223.1 1775587 1776171 R KEGG: mms:mma_2523 hypothetical protein; hypothetical protein complement(1775587..1776171) Desulfohalobium retbaense DSM 5692 8419363 YP_003198399.1 CDS Dret_1535 NC_013223.1 1776469 1776837 R hypothetical protein complement(1776469..1776837) Desulfohalobium retbaense DSM 5692 8419364 YP_003198400.1 CDS Dret_1536 NC_013223.1 1776922 1777275 R hypothetical protein complement(1776922..1777275) Desulfohalobium retbaense DSM 5692 8419365 YP_003198401.1 CDS Dret_1537 NC_013223.1 1777743 1778207 D KEGG: dat:HRM2_39510 IstA2; hypothetical protein 1777743..1778207 Desulfohalobium retbaense DSM 5692 8419366 YP_003198402.1 CDS Dret_1538 NC_013223.1 1778183 1781446 R PFAM: helicase domain protein; SMART: DEAD-like helicase; KEGG: dat:HRM2_44520 DEAD/DEAH box helicase:helicase, C-terminal; helicase domain-containing protein complement(1778183..1781446) Desulfohalobium retbaense DSM 5692 8419367 YP_003198403.1 CDS Dret_1539 NC_013223.1 1781443 1783269 R KEGG: dat:HRM2_44530 hypothetical protein; hypothetical protein complement(1781443..1783269) Desulfohalobium retbaense DSM 5692 8419368 YP_003198404.1 CDS Dret_1540 NC_013223.1 1783262 1784488 R KEGG: dat:HRM2_44540 hypothetical protein; hypothetical protein complement(1783262..1784488) Desulfohalobium retbaense DSM 5692 8419369 YP_003198405.1 CDS Dret_1541 NC_013223.1 1785040 1785210 D hypothetical protein 1785040..1785210 Desulfohalobium retbaense DSM 5692 8419370 YP_003198406.1 CDS Dret_1542 NC_013223.1 1785372 1786598 D PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1785372..1786598 Desulfohalobium retbaense DSM 5692 8419371 YP_003198407.1 CDS Dret_1543 NC_013223.1 1786758 1789697 R PFAM: type III restriction protein res subunit; helicase domain protein; phosphoribosyl-ATP pyrophosphohydrolase; SMART: DEAD-like helicase ; helicase domain protein; KEGG: sfu:Sfum_1438 type III restriction enzyme, res subunit; type III restriction protein res subunit complement(1786758..1789697) Desulfohalobium retbaense DSM 5692 8419372 YP_003198408.1 CDS Dret_1544 NC_013223.1 1789770 1790372 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: vvy:VV2199 tellurite resistance protein- related protein; type 11 methyltransferase complement(1789770..1790372) Desulfohalobium retbaense DSM 5692 8419373 YP_003198409.1 CDS Dret_1547 NC_013223.1 1790770 1791681 R KEGG: nwi:Nwi_1252 restriction endonuclease; restriction endonuclease complement(1790770..1791681) Desulfohalobium retbaense DSM 5692 8419376 YP_003198410.1 CDS Dret_1548 NC_013223.1 1792292 1792648 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: dvl:Dvul_1411 preprotein translocase subunit SecG; preprotein translocase subunit SecG complement(1792292..1792648) Desulfohalobium retbaense DSM 5692 8419378 YP_003198411.1 CDS Dret_1549 NC_013223.1 1792723 1793481 R TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; KEGG: dvm:DvMF_0348 triose-phosphate isomerase; triosephosphate isomerase complement(1792723..1793481) Desulfohalobium retbaense DSM 5692 8419379 YP_003198412.1 CDS Dret_1550 NC_013223.1 1793562 1793756 D hypothetical protein 1793562..1793756 Desulfohalobium retbaense DSM 5692 8419380 YP_003198413.1 CDS Dret_1551 NC_013223.1 1793814 1794992 R PFAM: phosphoglycerate kinase; KEGG: gbm:Gbem_2337 phosphoglycerate kinase; phosphoglycerate kinase complement(1793814..1794992) Desulfohalobium retbaense DSM 5692 8419381 YP_003198414.1 CDS Dret_1552 NC_013223.1 1795569 1796012 R TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: dvm:DvMF_0347 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(1795569..1796012) Desulfohalobium retbaense DSM 5692 8419382 YP_003198415.1 CDS Dret_1553 NC_013223.1 1796011 1796559 D PFAM: NUDIX hydrolase; KEGG: dma:DMR_18290 isopentenyl-diphosphate delta- isomerase family protein; NUDIX hydrolase 1796011..1796559 Desulfohalobium retbaense DSM 5692 8419383 YP_003198416.1 CDS Dret_1554 NC_013223.1 1797287 1798096 R PFAM: inositol monophosphatase; KEGG: dvm:DvMF_0345 inositol-phosphate phosphatase; inositol monophosphatase complement(1797287..1798096) Desulfohalobium retbaense DSM 5692 8419384 YP_003198417.1 CDS Dret_1555 NC_013223.1 1798219 1799244 R TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: dma:DMR_18270 rod shape-determining protein MreB; rod shape-determining protein MreB complement(1798219..1799244) Desulfohalobium retbaense DSM 5692 8419385 YP_003198418.1 CDS Dret_1556 NC_013223.1 1800095 1801093 R PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: dde:Dde_1994 hypothetical protein; putative phytochrome sensor protein complement(1800095..1801093) Desulfohalobium retbaense DSM 5692 8419386 YP_003198419.1 CDS Dret_1557 NC_013223.1 1801147 1801359 R KEGG: sfu:Sfum_3308 conserved hypothetical cytosolic protein; hypothetical protein complement(1801147..1801359) Desulfohalobium retbaense DSM 5692 8419387 YP_003198420.1 CDS Dret_1558 NC_013223.1 1801533 1803359 D KEGG: dde:Dde_1995 hypothetical protein; hypothetical protein 1801533..1803359 Desulfohalobium retbaense DSM 5692 8419388 YP_003198421.1 CDS Dret_1559 NC_013223.1 1803838 1804917 D TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: dvu:DVU1684 glycine cleavage system T protein; glycine cleavage system T protein 1803838..1804917 Desulfohalobium retbaense DSM 5692 8419389 YP_003198422.1 CDS Dret_1560 NC_013223.1 1805467 1805640 D hypothetical protein 1805467..1805640 Desulfohalobium retbaense DSM 5692 8419390 YP_003198423.1 CDS Dret_1561 NC_013223.1 1805987 1807051 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: oan:Oant_4496 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein complement(1805987..1807051) Desulfohalobium retbaense DSM 5692 8419391 YP_003198424.1 CDS Dret_1562 NC_013223.1 1807265 1807999 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1807265..1807999 Desulfohalobium retbaense DSM 5692 8419392 YP_003198425.1 CDS Dret_1563 NC_013223.1 1808307 1808768 D KEGG: hypothetical protein; hypothetical protein 1808307..1808768 Desulfohalobium retbaense DSM 5692 8419393 YP_003198426.1 CDS Dret_1564 NC_013223.1 1809033 1810247 D PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: dma:DMR_18220 putative ATPase; recombination factor protein RarA 1809033..1810247 Desulfohalobium retbaense DSM 5692 8419394 YP_003198427.1 CDS Dret_1565 NC_013223.1 1811157 1814063 R PFAM: Peptidase M16C associated domain protein; peptidase M16 domain protein; KEGG: sfu:Sfum_1661 peptidase M16C associated domain protein; Peptidase M16C associated domain-containing protein complement(1811157..1814063) Desulfohalobium retbaense DSM 5692 8419395 YP_003198428.1 CDS Dret_1566 NC_013223.1 1814909 1815904 R KEGG: dps:DP0367 hypothetical protein; hypothetical protein complement(1814909..1815904) Desulfohalobium retbaense DSM 5692 8419396 YP_003198429.1 CDS Dret_1567 NC_013223.1 1815968 1816987 R PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: dps:DP0368 hypothetical protein; hypothetical protein complement(1815968..1816987) Desulfohalobium retbaense DSM 5692 8419397 YP_003198430.1 CDS Dret_1568 NC_013223.1 1817080 1817910 R KEGG: sfu:Sfum_3885 hypothetical protein; hypothetical protein complement(1817080..1817910) Desulfohalobium retbaense DSM 5692 8419398 YP_003198431.1 CDS Dret_1569 NC_013223.1 1817900 1818529 R KEGG: sfu:Sfum_3886 glycoside hydrolase, family 13 domain protein; glycoside hydrolase family protein complement(1817900..1818529) Desulfohalobium retbaense DSM 5692 8419399 YP_003198432.1 CDS Dret_1570 NC_013223.1 1818526 1819083 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sfu:Sfum_3887 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit complement(1818526..1819083) Desulfohalobium retbaense DSM 5692 8419400 YP_003198433.1 CDS Dret_1571 NC_013223.1 1819609 1819761 D hypothetical protein 1819609..1819761 Desulfohalobium retbaense DSM 5692 8419401 YP_003198434.1 CDS Dret_1572 NC_013223.1 1820072 1821490 R PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: dde:Dde_1315 UTP--glucose-1-phosphate uridylyltransferase; UTP--glucose-1-phosphate uridylyltransferase complement(1820072..1821490) Desulfohalobium retbaense DSM 5692 8419402 YP_003198435.1 CDS Dret_1573 NC_013223.1 1821875 1822861 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; KEGG: gme:Gmet_2329 UDP-galactose 4-epimerase; UDP-glucose 4-epimerase 1821875..1822861 Desulfohalobium retbaense DSM 5692 8419403 YP_003198436.1 CDS Dret_1574 NC_013223.1 1823193 1823684 D KEGG: dma:DMR_11410 hypothetical protein; hypothetical protein 1823193..1823684 Desulfohalobium retbaense DSM 5692 8419404 YP_003198437.1 CDS Dret_1575 NC_013223.1 1824435 1825499 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: oan:Oant_4496 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 1824435..1825499 Desulfohalobium retbaense DSM 5692 8419405 YP_003198438.1 CDS Dret_1576 NC_013223.1 1826109 1827224 R KEGG: dvm:DvMF_3044 hypothetical protein; hypothetical protein complement(1826109..1827224) Desulfohalobium retbaense DSM 5692 8419406 YP_003198439.1 CDS Dret_1577 NC_013223.1 1827560 1827937 D TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: dma:DMR_31770 glycine cleavage system H protein; glycine cleavage system H protein 1827560..1827937 Desulfohalobium retbaense DSM 5692 8419407 YP_003198440.1 CDS Dret_1578 NC_013223.1 1827986 1829317 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 1827986..1829317 Desulfohalobium retbaense DSM 5692 8419408 YP_003198441.1 CDS Dret_1579 NC_013223.1 1829314 1830780 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 1829314..1830780 Desulfohalobium retbaense DSM 5692 8419409 YP_003198442.1 CDS Dret_1580 NC_013223.1 1830767 1832137 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: dvl:Dvul_1653 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1830767..1832137 Desulfohalobium retbaense DSM 5692 8419410 YP_003198443.1 CDS Dret_1581 NC_013223.1 1832263 1832916 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: dvm:DvMF_2587 maf protein; maf protein 1832263..1832916 Desulfohalobium retbaense DSM 5692 8419411 YP_003198444.1 CDS Dret_1582 NC_013223.1 1833016 1833498 D PFAM: phosphatidylglycerophosphatase A; KEGG: dvl:Dvul_2413 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 1833016..1833498 Desulfohalobium retbaense DSM 5692 8419412 YP_003198445.1 CDS Dret_1583 NC_013223.1 1833562 1834218 D TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: ilo:IL2439 hemolysin III-like protein; hemolysin III family channel protein 1833562..1834218 Desulfohalobium retbaense DSM 5692 8419413 YP_003198446.1 CDS Dret_1584 NC_013223.1 1834783 1835382 R TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3633 peptidoglycan-associated lipoprotein, putative; peptidoglycan-associated lipoprotein complement(1834783..1835382) Desulfohalobium retbaense DSM 5692 8419414 YP_003198447.1 CDS Dret_1585 NC_013223.1 1835774 1837087 R PFAM: WD40 domain protein beta Propeller; KEGG: dde:Dde_3632 TolB protein, putative; WD40 domain-containing protein beta Propeller complement(1835774..1837087) Desulfohalobium retbaense DSM 5692 8419415 YP_003198448.1 CDS Dret_1586 NC_013223.1 1837094 1837924 R TIGRFAM: TonB family protein; protein TolA; KEGG: dde:Dde_3631 TonB-like; TonB family protein complement(1837094..1837924) Desulfohalobium retbaense DSM 5692 8419416 YP_003198449.1 CDS Dret_1587 NC_013223.1 1837953 1838369 R TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dvm:DvMF_2363 protein TolR; protein TolR complement(1837953..1838369) Desulfohalobium retbaense DSM 5692 8419417 YP_003198450.1 CDS Dret_1588 NC_013223.1 1838374 1839105 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: dma:DMR_13890 putative protein TolQ; MotA/TolQ/ExbB proton channel complement(1838374..1839105) Desulfohalobium retbaense DSM 5692 8419418 YP_003198451.1 CDS Dret_1589 NC_013223.1 1839282 1839944 R PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dma:DMR_17210 PHP domain protein; hypothetical protein complement(1839282..1839944) Desulfohalobium retbaense DSM 5692 8419419 YP_003198452.1 CDS Dret_1590 NC_013223.1 1839968 1840462 R PFAM: protein of unknown function DUF151; KEGG: dma:DMR_17220 hypothetical protein; hypothetical protein complement(1839968..1840462) Desulfohalobium retbaense DSM 5692 8419420 YP_003198453.1 CDS Dret_1591 NC_013223.1 1840456 1841793 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1840456..1841793) Desulfohalobium retbaense DSM 5692 8419421 YP_003198454.1 CDS Dret_1592 NC_013223.1 1841932 1842549 R KEGG: dma:DMR_17280 putative adenylylsulfate kinase; putative adenylylsulfate kinase complement(1841932..1842549) Desulfohalobium retbaense DSM 5692 8419422 YP_003198455.1 CDS Dret_1593 NC_013223.1 1842840 1843271 R PFAM: nitrogen-fixing NifU domain protein; KEGG: dal:Dalk_4352 nitrogen-fixing NifU domain protein; nitrogen-fixing NifU domain-containing protein complement(1842840..1843271) Desulfohalobium retbaense DSM 5692 8419423 YP_003198456.1 CDS Dret_1594 NC_013223.1 1843513 1844436 R catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase complement(1843513..1844436) Desulfohalobium retbaense DSM 5692 8419424 YP_003198457.1 CDS Dret_1595 NC_013223.1 1844955 1845701 R KEGG: dvl:Dvul_1499 hypothetical protein; hypothetical protein complement(1844955..1845701) Desulfohalobium retbaense DSM 5692 8419425 YP_003198458.1 CDS Dret_1596 NC_013223.1 1845661 1846143 R PFAM: PTS system sorbose subfamily IIB component; KEGG: dde:Dde_1776 PTS system, IIB component; PTS system sorbose subfamily transporter subunit IIB complement(1845661..1846143) Desulfohalobium retbaense DSM 5692 8419426 YP_003198459.1 CDS Dret_1597 NC_013223.1 1846136 1846546 R PFAM: PTS system fructose subfamily IIA component; KEGG: dma:DMR_25830 phosphotransferase system enzyme IIA component; PTS system fructose subfamily transporter subunit IIA complement(1846136..1846546) Desulfohalobium retbaense DSM 5692 8419427 YP_003198460.1 CDS Dret_1598 NC_013223.1 1846615 1847499 R PFAM: conserved hypothetical protein; KEGG: dvm:DvMF_0424 hypothetical protein; hypothetical protein complement(1846615..1847499) Desulfohalobium retbaense DSM 5692 8419428 YP_003198461.1 CDS Dret_1599 NC_013223.1 1847620 1848069 R PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: dma:DMR_25850 putative phosphotransferase system nitrogen regulatory IIA component; putative PTS IIA-like nitrogen-regulatory protein PtsN complement(1847620..1848069) Desulfohalobium retbaense DSM 5692 8419429 YP_003198462.1 CDS Dret_1600 NC_013223.1 1848069 1848617 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: dma:DMR_25860 sigma 54 modulation protein/ribosomal protein S30EA domain protein; sigma 54 modulation protein/30S ribosomal protein S30EA complement(1848069..1848617) Desulfohalobium retbaense DSM 5692 8419430 YP_003198463.1 CDS Dret_1601 NC_013223.1 1848689 1850113 R TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; KEGG: dvl:Dvul_1505 RNA polymerase, sigma 54 subunit, RpoN; RNA polymerase sigma 54 subunit RpoN complement(1848689..1850113) Desulfohalobium retbaense DSM 5692 8419431 YP_003198464.1 CDS Dret_1602 NC_013223.1 1850493 1851221 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvm:DvMF_0428 ABC transporter related; ABC transporter complement(1850493..1851221) Desulfohalobium retbaense DSM 5692 8419432 YP_003198465.1 CDS Dret_1603 NC_013223.1 1851202 1851747 R PFAM: OstA family protein; KEGG: dvm:DvMF_0429 OstA family protein; OstA family protein complement(1851202..1851747) Desulfohalobium retbaense DSM 5692 8419433 YP_003198466.1 CDS Dret_1604 NC_013223.1 1851744 1852322 R PFAM: protein of unknown function DUF1239; KEGG: dde:Dde_1768 hypothetical protein; hypothetical protein complement(1851744..1852322) Desulfohalobium retbaense DSM 5692 8419434 YP_003198467.1 CDS Dret_1605 NC_013223.1 1852301 1852822 R TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: dde:Dde_1767 phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(1852301..1852822) Desulfohalobium retbaense DSM 5692 8419435 YP_003198468.1 CDS Dret_1606 NC_013223.1 1852812 1853627 R TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: dvm:DvMF_0432 2-dehydro-3- deoxyphosphooctonate aldolase; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1852812..1853627) Desulfohalobium retbaense DSM 5692 8419436 YP_003198469.1 CDS pyrG NC_013223.1 1853628 1855268 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(1853628..1855268) Desulfohalobium retbaense DSM 5692 8419437 YP_003198470.1 CDS Dret_1608 NC_013223.1 1855560 1856366 D KEGG: dds:Ddes_0976 phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase 1855560..1856366 Desulfohalobium retbaense DSM 5692 8419438 YP_003198471.1 CDS Dret_1609 NC_013223.1 1856393 1856890 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dde:Dde_1779 tRNA-adenosine deaminase; zinc-binding CMP/dCMP deaminase 1856393..1856890 Desulfohalobium retbaense DSM 5692 8419439 YP_003198472.1 CDS Dret_1610 NC_013223.1 1857181 1858365 D PFAM: integrase family protein; KEGG: lpc:LPC_0202 integrase; integrase family protein 1857181..1858365 Desulfohalobium retbaense DSM 5692 8419441 YP_003198473.1 CDS Dret_1611 NC_013223.1 1859240 1859464 D PFAM: Prophage CP4-57 regulatory; KEGG: gbm:Gbem_3477 phage transcriptional regulator, AlpA; phage transcriptional regulator, AlpA 1859240..1859464 Desulfohalobium retbaense DSM 5692 8419442 YP_003198474.1 CDS Dret_1612 NC_013223.1 1859647 1862247 D KEGG: nwi:Nwi_1258 hypothetical protein; hypothetical protein 1859647..1862247 Desulfohalobium retbaense DSM 5692 8419443 YP_003198475.1 CDS Dret_1613 NC_013223.1 1862555 1863058 R hypothetical protein complement(1862555..1863058) Desulfohalobium retbaense DSM 5692 8419444 YP_003198476.1 CDS Dret_1614 NC_013223.1 1863367 1863888 D KEGG: pne:Pnec_1608 single-strand binding protein; hypothetical protein 1863367..1863888 Desulfohalobium retbaense DSM 5692 8419445 YP_003198477.1 CDS Dret_1615 NC_013223.1 1863974 1864270 D hypothetical protein 1863974..1864270 Desulfohalobium retbaense DSM 5692 8419446 YP_003198478.1 CDS Dret_1616 NC_013223.1 1864286 1865017 D KEGG: sat:SYN_00492 putative cytoplasmic protein; hypothetical protein 1864286..1865017 Desulfohalobium retbaense DSM 5692 8419447 YP_003198479.1 CDS Dret_1617 NC_013223.1 1865049 1865249 D KEGG: dol:Dole_2708 hypothetical protein; hypothetical protein 1865049..1865249 Desulfohalobium retbaense DSM 5692 8419448 YP_003198480.1 CDS Dret_1618 NC_013223.1 1865300 1865791 D KEGG: elf:LF82_p102 hypothetical protein; hypothetical protein 1865300..1865791 Desulfohalobium retbaense DSM 5692 8419449 YP_003198481.1 CDS Dret_1619 NC_013223.1 1865804 1866769 D SMART: AAA ATPase; KEGG: abm:ABSDF2510 putative bacteriophage protein; ATPase AAA 1865804..1866769 Desulfohalobium retbaense DSM 5692 8419450 YP_003198482.1 CDS Dret_1620 NC_013223.1 1867120 1867356 D KEGG: sat:SYN_03173 transposase; hypothetical protein 1867120..1867356 Desulfohalobium retbaense DSM 5692 8419451 YP_003198483.1 CDS Dret_1621 NC_013223.1 1867979 1868671 D hypothetical protein 1867979..1868671 Desulfohalobium retbaense DSM 5692 8419452 YP_003198484.1 CDS Dret_1622 NC_013223.1 1869714 1872056 D KEGG: tgr:Tgr7_2442 hypothetical protein; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR- associated helicase Cas3, Anaes-subtype; PFAM: helicase domain protein; SMART: helicase domain protein; DEAD-like helicase; CRISPR-associated helicase Cas3 1869714..1872056 Desulfohalobium retbaense DSM 5692 8419453 YP_003198485.1 CDS Dret_1623 NC_013223.1 1872049 1874406 D KEGG: tgr:Tgr7_2441 hypothetical protein; hypothetical protein 1872049..1874406 Desulfohalobium retbaense DSM 5692 8419454 YP_003198486.1 CDS Dret_1624 NC_013223.1 1874399 1875382 D PFAM: CRISPR-associated protein GSU0053; KEGG: tgr:Tgr7_2440 hypothetical protein; CRISPR-associated protein 1874399..1875382 Desulfohalobium retbaense DSM 5692 8419455 YP_003198487.1 CDS Dret_1625 NC_013223.1 1875386 1876822 D KEGG: tgr:Tgr7_2439 hypothetical protein; hypothetical protein 1875386..1876822 Desulfohalobium retbaense DSM 5692 8419456 YP_003198488.1 CDS Dret_1626 NC_013223.1 1877522 1877671 D hypothetical protein 1877522..1877671 Desulfohalobium retbaense DSM 5692 8419457 YP_003198489.1 CDS Dret_1627 NC_013223.1 1877730 1878395 R PFAM: nuclease (SNase domain protein); Excalibur domain protein; SMART: nuclease (SNase domain protein); KEGG: dma:DMR_41750 putative nuclease; nuclease (SNase domain-containing protein) complement(1877730..1878395) Desulfohalobium retbaense DSM 5692 8419458 YP_003198490.1 CDS Dret_1628 NC_013223.1 1878376 1878603 R hypothetical protein complement(1878376..1878603) Desulfohalobium retbaense DSM 5692 8419459 YP_003198491.1 CDS Dret_1629 NC_013223.1 1878674 1878874 R hypothetical protein complement(1878674..1878874) Desulfohalobium retbaense DSM 5692 8419460 YP_003198492.1 CDS Dret_1630 NC_013223.1 1879245 1879451 R KEGG: neu:NE0392 hypothetical protein; hypothetical protein complement(1879245..1879451) Desulfohalobium retbaense DSM 5692 8419461 YP_003198493.1 CDS Dret_1631 NC_013223.1 1879606 1880397 D PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3021 nitroreductase family protein; nitroreductase 1879606..1880397 Desulfohalobium retbaense DSM 5692 8419462 YP_003198494.1 CDS Dret_1632 NC_013223.1 1880895 1881191 D KEGG: bpe:BP2183 hypothetical protein; hypothetical protein 1880895..1881191 Desulfohalobium retbaense DSM 5692 8419463 YP_003198495.1 CDS Dret_1633 NC_013223.1 1881291 1884386 R KEGG: gur:Gura_0766 tetratricopeptide TPR_4; hypothetical protein complement(1881291..1884386) Desulfohalobium retbaense DSM 5692 8419464 YP_003198496.1 CDS Dret_1634 NC_013223.1 1884725 1885141 D hypothetical protein 1884725..1885141 Desulfohalobium retbaense DSM 5692 8419465 YP_003198497.1 CDS Dret_1635 NC_013223.1 1885352 1885876 D KEGG: sat:SYN_03033 putative cytoplasmic protein; putative cytoplasmic protein 1885352..1885876 Desulfohalobium retbaense DSM 5692 8419466 YP_003198498.1 CDS Dret_1636 NC_013223.1 1886190 1886333 D PFAM: Desulfoferrodoxin Dfx domain protein; KEGG: ppd:Ppro_1133 desulfoferrodoxin; desulfoferrodoxin Dfx domain-containing protein 1886190..1886333 Desulfohalobium retbaense DSM 5692 8419467 YP_003198499.1 CDS Dret_1637 NC_013223.1 1886407 1886625 D PFAM: Dissimilatory sulfite reductase D; KEGG: dat:HRM2_42380 DsrD; dissimilatory sulfite reductase D 1886407..1886625 Desulfohalobium retbaense DSM 5692 8419468 YP_003198500.1 CDS Dret_1638 NC_013223.1 1886714 1887235 R KEGG: aeh:Mlg_1164 hypothetical protein; hypothetical protein complement(1886714..1887235) Desulfohalobium retbaense DSM 5692 8419469 YP_003198501.1 CDS Dret_1639 NC_013223.1 1887366 1889159 D PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dde:Dde_0310 CBS; Cl- channel voltage-gated family protein 1887366..1889159 Desulfohalobium retbaense DSM 5692 8419470 YP_003198502.1 CDS Dret_1640 NC_013223.1 1889336 1890910 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_2713 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(1889336..1890910) Desulfohalobium retbaense DSM 5692 8419471 YP_003198503.1 CDS Dret_1641 NC_013223.1 1890907 1891827 R PFAM: protein of unknown function DUF362; KEGG: dvm:DvMF_2714 protein of unknown function DUF362; hypothetical protein complement(1890907..1891827) Desulfohalobium retbaense DSM 5692 8419472 YP_003198504.1 CDS Dret_1642 NC_013223.1 1891944 1893422 R KEGG: dde:Dde_3125 hypothetical protein; hypothetical protein complement(1891944..1893422) Desulfohalobium retbaense DSM 5692 8419473 YP_003198505.1 CDS Dret_1643 NC_013223.1 1893488 1894171 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dma:DMR_38640 Crp family transcriptional regulator; CarD family transcriptional regulator complement(1893488..1894171) Desulfohalobium retbaense DSM 5692 8419474 YP_003198506.1 CDS Dret_1644 NC_013223.1 1894803 1895297 D PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dvl:Dvul_0940 rubrerythrin; rubrerythrin 1894803..1895297 Desulfohalobium retbaense DSM 5692 8419475 YP_003198507.1 CDS Dret_1645 NC_013223.1 1895416 1896177 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbt:BBta_6457 ABC transporter ATP-binding protein; ABC transporter complement(1895416..1896177) Desulfohalobium retbaense DSM 5692 8419476 YP_003198508.1 CDS Dret_1646 NC_013223.1 1896390 1897169 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3788 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1896390..1897169) Desulfohalobium retbaense DSM 5692 8419477 YP_003198509.1 CDS Dret_1647 NC_013223.1 1897174 1898148 R KEGG: pfo:Pfl01_4931 putative sulfonate/nitrate transport system substrate-binding protein; putative sulfonate/nitrate transport system substrate-binding protein complement(1897174..1898148) Desulfohalobium retbaense DSM 5692 8419478 YP_003198510.1 CDS Dret_1648 NC_013223.1 1898304 1901834 R KEGG: dol:Dole_3272 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAC repeat-containing protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; multi-sensor hybrid histidine kinase complement(1898304..1901834) Desulfohalobium retbaense DSM 5692 8419479 YP_003198511.1 CDS Dret_1649 NC_013223.1 1902558 1903382 R KEGG: sfu:Sfum_3174 hypothetical protein; hypothetical protein complement(1902558..1903382) Desulfohalobium retbaense DSM 5692 8419480 YP_003198512.1 CDS Dret_1650 NC_013223.1 1903754 1904224 D KEGG: gsu:GSU0472 hypothetical protein; hypothetical protein 1903754..1904224 Desulfohalobium retbaense DSM 5692 8419481 YP_003198513.1 CDS Dret_1651 NC_013223.1 1904379 1904756 R KEGG: dat:HRM2_48580 hypothetical protein; hypothetical protein complement(1904379..1904756) Desulfohalobium retbaense DSM 5692 8419482 YP_003198514.1 CDS Dret_1652 NC_013223.1 1904891 1906147 D PFAM: Tetratricopeptide TPR_4; TPR repeat- containing protein; SMART: Tetratricopeptide repeat; KEGG: dde:Dde_2157 TPR repeat-containing protein; hypothetical protein 1904891..1906147 Desulfohalobium retbaense DSM 5692 8419483 YP_003198515.1 CDS Dret_1653 NC_013223.1 1906213 1907046 D KEGG: dde:Dde_2152 hypothetical protein; hypothetical protein 1906213..1907046 Desulfohalobium retbaense DSM 5692 8419484 YP_003198516.1 CDS Dret_1654 NC_013223.1 1907046 1908488 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_2153 transport protein TolQ-like; MotA/TolQ/ExbB proton channel 1907046..1908488 Desulfohalobium retbaense DSM 5692 8419485 YP_003198517.1 CDS Dret_1655 NC_013223.1 1908478 1909134 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: dal:Dalk_3682 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1908478..1909134 Desulfohalobium retbaense DSM 5692 8419486 YP_003198518.1 CDS Dret_1656 NC_013223.1 1909121 1909549 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dde:Dde_2155 biopolymer transport protein (ExbD2); biopolymer transport protein ExbD/TolR 1909121..1909549 Desulfohalobium retbaense DSM 5692 8419487 YP_003198519.1 CDS Dret_1657 NC_013223.1 1909546 1910259 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: dds:Ddes_1461 TonB family protein; TonB family protein 1909546..1910259 Desulfohalobium retbaense DSM 5692 8419488 YP_003198520.1 CDS Dret_1658 NC_013223.1 1910420 1911238 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: dde:Dde_0435 glycerophosphoryl diester phosphodiesterase family protein; glycerophosphoryl diester phosphodiesterase complement(1910420..1911238) Desulfohalobium retbaense DSM 5692 8419489 YP_003198521.1 CDS Dret_1659 NC_013223.1 1911242 1913599 R PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: sat:SYN_01404 general secretion pathway protein E; type II secretion system protein E complement(1911242..1913599) Desulfohalobium retbaense DSM 5692 8419490 YP_003198522.1 CDS Dret_1660 NC_013223.1 1914099 1915088 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(1914099..1915088) Desulfohalobium retbaense DSM 5692 8419491 YP_003198523.1 CDS ilvH NC_013223.1 1915259 1915747 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(1915259..1915747) Desulfohalobium retbaense DSM 5692 8419492 YP_003198524.1 CDS Dret_1662 NC_013223.1 1915785 1917479 R TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: dvm:DvMF_0153 acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase large subunit complement(1915785..1917479) Desulfohalobium retbaense DSM 5692 8419493 YP_003198525.1 CDS Dret_1663 NC_013223.1 1917482 1917712 R KEGG: dma:DMR_21820 hypothetical protein; hypothetical protein complement(1917482..1917712) Desulfohalobium retbaense DSM 5692 8419494 YP_003198526.1 CDS Dret_1664 NC_013223.1 1917724 1918041 R PFAM: protein of unknown function DUF167; KEGG: dvl:Dvul_1694 hypothetical protein; hypothetical protein complement(1917724..1918041) Desulfohalobium retbaense DSM 5692 8419495 YP_003198527.1 CDS Dret_1665 NC_013223.1 1918092 1918391 R PFAM: protein of unknown function YGGT; KEGG: dvm:DvMF_0149 protein of unknown function YGGT; hypothetical protein complement(1918092..1918391) Desulfohalobium retbaense DSM 5692 8419496 YP_003198528.1 CDS Dret_1666 NC_013223.1 1918519 1919229 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dma:DMR_21780 haloacid dehalogenase-like hydrolase family protein; HAD-superfamily hydrolase complement(1918519..1919229) Desulfohalobium retbaense DSM 5692 8419497 YP_003198529.1 CDS Dret_1667 NC_013223.1 1919246 1920895 R PFAM: AMP-dependent synthetase and ligase; KEGG: sfu:Sfum_0870 acyl-CoA synthetase; AMP-binding domain-containing protein complement(1919246..1920895) Desulfohalobium retbaense DSM 5692 8419498 YP_003198530.1 CDS Dret_1668 NC_013223.1 1920951 1921517 R PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sfu:Sfum_0869 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1920951..1921517) Desulfohalobium retbaense DSM 5692 8419499 YP_003198531.1 CDS Dret_1669 NC_013223.1 1921655 1922449 R KEGG: dvl:Dvul_1698 hypothetical protein; hypothetical protein complement(1921655..1922449) Desulfohalobium retbaense DSM 5692 8419500 YP_003198532.1 CDS Dret_1670 NC_013223.1 1922711 1923463 R hypothetical protein complement(1922711..1923463) Desulfohalobium retbaense DSM 5692 8419501 YP_003198533.1 CDS Dret_1671 NC_013223.1 1923600 1923839 D TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dma:DMR_21750 sec-independent protein translocase protein TatA/E; twin-arginine translocation protein, TatA/E family subunit 1923600..1923839 Desulfohalobium retbaense DSM 5692 8419502 YP_003198534.1 CDS Dret_1672 NC_013223.1 1924220 1925161 R KEGG: dde:Dde_2178 putative lipoprotein; hypothetical protein complement(1924220..1925161) Desulfohalobium retbaense DSM 5692 8419503 YP_003198535.1 CDS Dret_1673 NC_013223.1 1925172 1926098 R KEGG: dde:Dde_2180 hypothetical protein; hypothetical protein complement(1925172..1926098) Desulfohalobium retbaense DSM 5692 8419504 YP_003198536.1 CDS Dret_1674 NC_013223.1 1926310 1927254 R KEGG: dde:Dde_1784 tRNA delta(2)- isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1926310..1927254) Desulfohalobium retbaense DSM 5692 8419505 YP_003198537.1 CDS Dret_1675 NC_013223.1 1927285 1927782 R KEGG: dvm:DvMF_0173 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase complement(1927285..1927782) Desulfohalobium retbaense DSM 5692 8419506 YP_003198538.1 CDS Dret_1676 NC_013223.1 1927767 1928327 R KEGG: dvm:DvMF_0172 methyltransferase; TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; methyltransferase complement(1927767..1928327) Desulfohalobium retbaense DSM 5692 8419507 YP_003198539.1 CDS Dret_1677 NC_013223.1 1928613 1930247 R PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: sat:SYN_00166 metallo-beta-lactamase protein; beta-lactamase domain-containing protein complement(1928613..1930247) Desulfohalobium retbaense DSM 5692 8419508 YP_003198540.1 CDS Dret_1678 NC_013223.1 1930226 1931182 R SMART: GGDEF domain containing protein; KEGG: mxa:MXAN_5791 response regulator/GGDEF domain- containing protein; response regulator receiver modulated diguanylate cyclase complement(1930226..1931182) Desulfohalobium retbaense DSM 5692 8419509 YP_003198541.1 CDS Dret_1679 NC_013223.1 1931515 1932342 D PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; KEGG: dvm:DvMF_3162 Smr protein/MutS2; Smr protein/MutS2 1931515..1932342 Desulfohalobium retbaense DSM 5692 8419510 YP_003198542.1 CDS Dret_1680 NC_013223.1 1932512 1933846 D KEGG: dde:Dde_0560 signal recognition particle- docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 1932512..1933846 Desulfohalobium retbaense DSM 5692 8419511 YP_003198543.1 CDS Dret_1681 NC_013223.1 1934044 1934901 R PFAM: pseudouridine synthase; KEGG: dde:Dde_0975 pseudouridylate synthase 23S RNA- specific-like; pseudouridine synthase complement(1934044..1934901) Desulfohalobium retbaense DSM 5692 8419512 YP_003198544.1 CDS Dret_1682 NC_013223.1 1934976 1935353 D PFAM: protein of unknown function DUF814; KEGG: scl:sce0899 putative fibronectin-binding protein-like protein A; hypothetical protein 1934976..1935353 Desulfohalobium retbaense DSM 5692 8419513 YP_003198545.1 CDS Dret_1683 NC_013223.1 1935443 1936117 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1935443..1936117 Desulfohalobium retbaense DSM 5692 8419514 YP_003198546.1 CDS Dret_1684 NC_013223.1 1936238 1937092 D PFAM: protein of unknown function DUF178; KEGG: dma:DMR_16380 hypothetical protein; hypothetical protein 1936238..1937092 Desulfohalobium retbaense DSM 5692 8419515 YP_003198547.1 CDS rpsT NC_013223.1 1937215 1937478 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1937215..1937478) Desulfohalobium retbaense DSM 5692 8419516 YP_003198548.1 CDS Dret_1686 NC_013223.1 1937713 1939803 R KEGG: dma:DMR_20850 glycyl-tRNA synthetase beta chain; TIGRFAM: glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta complement(1937713..1939803) Desulfohalobium retbaense DSM 5692 8419517 YP_003198549.1 CDS glyQ NC_013223.1 1939848 1940720 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(1939848..1940720) Desulfohalobium retbaense DSM 5692 8419518 YP_003198550.1 CDS Dret_1688 NC_013223.1 1940937 1941695 R TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: dde:Dde_2035 DNA repair protein RecO; DNA repair protein RecO complement(1940937..1941695) Desulfohalobium retbaense DSM 5692 8419519 YP_003198551.1 CDS Dret_1689 NC_013223.1 1941761 1942789 R KEGG: dde:Dde_2036 XRE family transcriptional regulator; XRE family transcriptional regulator complement(1941761..1942789) Desulfohalobium retbaense DSM 5692 8419520 YP_003198552.1 CDS Dret_1690 NC_013223.1 1942886 1943821 R PFAM: SurA domain; PpiC-type peptidyl-prolyl cis- trans isomerase; KEGG: dma:DMR_20800 putative peptidyl-prolyl cis- trans isomerase; SurA domain-containing protein complement(1942886..1943821) Desulfohalobium retbaense DSM 5692 8419521 YP_003198553.1 CDS Dret_1691 NC_013223.1 1943933 1947394 R KEGG: dma:DMR_20780 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase domain protein; transcription factor CarD; TRCF domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; transcription-repair coupling factor complement(1943933..1947394) Desulfohalobium retbaense DSM 5692 8419522 YP_003198554.1 CDS Dret_1692 NC_013223.1 1948046 1948282 D KEGG: dvm:DvMF_0283 hypothetical protein; hypothetical protein 1948046..1948282 Desulfohalobium retbaense DSM 5692 8419523 YP_003198555.1 CDS Dret_1693 NC_013223.1 1948622 1949959 R KEGG: dma:DMR_27530 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase complement(1948622..1949959) Desulfohalobium retbaense DSM 5692 8419524 YP_003198556.1 CDS Dret_1694 NC_013223.1 1950087 1953977 R KEGG: dat:HRM2_27650 PilY1; Tfp pilus assembly protein tip-associated adhesin PilY1-like protein complement(1950087..1953977) Desulfohalobium retbaense DSM 5692 8419525 YP_003198557.1 CDS Dret_1695 NC_013223.1 1954003 1954338 R hypothetical protein complement(1954003..1954338) Desulfohalobium retbaense DSM 5692 8419526 YP_003198558.1 CDS Dret_1696 NC_013223.1 1954359 1955006 R KEGG: dat:HRM2_27660 PilX; hypothetical protein complement(1954359..1955006) Desulfohalobium retbaense DSM 5692 8419527 YP_003198559.1 CDS Dret_1697 NC_013223.1 1955003 1955419 R KEGG: sat:SYN_01760 hypothetical protein; hypothetical protein complement(1955003..1955419) Desulfohalobium retbaense DSM 5692 8419528 YP_003198560.1 CDS Dret_1698 NC_013223.1 1955392 1956291 R KEGG: shn:Shewana3_3131 prepilin-type cleavage/methylation-like protein; hypothetical protein complement(1955392..1956291) Desulfohalobium retbaense DSM 5692 8419529 YP_003198561.1 CDS Dret_1699 NC_013223.1 1956295 1956651 R hypothetical protein complement(1956295..1956651) Desulfohalobium retbaense DSM 5692 8419530 YP_003198562.1 CDS Dret_1700 NC_013223.1 1957066 1957791 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1957066..1957791 Desulfohalobium retbaense DSM 5692 8419531 YP_003198563.1 CDS Dret_1701 NC_013223.1 1958120 1958503 D TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: dvm:DvMF_0280 holo-acyl-carrier-protein synthase; holo-ACP synthase 1958120..1958503 Desulfohalobium retbaense DSM 5692 8419532 YP_003198564.1 CDS Dret_1702 NC_013223.1 1958602 1960152 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF- family domain protein; KEGG: dma:DMR_17920 hypothetical protein; carbohydrate kinase 1958602..1960152 Desulfohalobium retbaense DSM 5692 8419533 YP_003198565.1 CDS Dret_1703 NC_013223.1 1960136 1960582 D PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: sfu:Sfum_2202 CBS domain containing membrane protein; hypothetical protein 1960136..1960582 Desulfohalobium retbaense DSM 5692 8419534 YP_003198566.1 CDS Dret_1704 NC_013223.1 1960589 1961095 D PFAM: protein of unknown function UPF0079; KEGG: dde:Dde_2047 hypothetical protein; hypothetical protein 1960589..1961095 Desulfohalobium retbaense DSM 5692 8419535 YP_003198567.1 CDS Dret_1705 NC_013223.1 1961174 1962427 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1961174..1962427 Desulfohalobium retbaense DSM 5692 8419536 YP_003198568.1 CDS Dret_1706 NC_013223.1 1962424 1964055 D TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; KEGG: dma:DMR_17880 2-isopropylmalate synthase/homocitrate synthase family protein; putative alpha-isopropylmalate/homocitrate synthase family transferase 1962424..1964055 Desulfohalobium retbaense DSM 5692 8419537 YP_003198569.1 CDS Dret_1707 NC_013223.1 1964052 1964903 D PFAM: beta-lactamase domain protein; KEGG: tau:Tola_0320 beta-lactamase domain protein; beta-lactamase domain-containing protein 1964052..1964903 Desulfohalobium retbaense DSM 5692 8419538 YP_003198570.1 CDS Dret_1708 NC_013223.1 1964927 1965700 R KEGG: dvl:Dvul_1336 putative carboxylesterase; putative carboxylesterase complement(1964927..1965700) Desulfohalobium retbaense DSM 5692 8419539 YP_003198571.1 CDS Dret_1709 NC_013223.1 1965726 1967087 R PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; protein of unknown function DUF1566; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: dde:Dde_3468 serine/threonine protein kinase; serine/threonine protein kinase complement(1965726..1967087) Desulfohalobium retbaense DSM 5692 8419540 YP_003198572.1 CDS Dret_1710 NC_013223.1 1967208 1967933 R PFAM: metallophosphoesterase; KEGG: sfu:Sfum_2718 metallophosphoesterase; metallophosphoesterase complement(1967208..1967933) Desulfohalobium retbaense DSM 5692 8419541 YP_003198573.1 CDS Dret_1711 NC_013223.1 1968104 1968484 D TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: dma:DMR_17090 protein CrcB homolog; CrcB protein 1968104..1968484 Desulfohalobium retbaense DSM 5692 8419542 YP_003198574.1 CDS Dret_1712 NC_013223.1 1968689 1969327 D PFAM: CI repressor; KEGG: dvl:Dvul_1413 putative phage repressor; CI repressor 1968689..1969327 Desulfohalobium retbaense DSM 5692 8419543 YP_003198575.1 CDS Dret_1713 NC_013223.1 1969336 1969860 R TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dvl:Dvul_1234 PfpI family intracellular peptidase; Pfpi family intracellular protease complement(1969336..1969860) Desulfohalobium retbaense DSM 5692 8419544 YP_003198576.1 CDS Dret_1714 NC_013223.1 1970068 1970394 D KEGG: dma:DMR_03410 hypothetical protein; hypothetical protein 1970068..1970394 Desulfohalobium retbaense DSM 5692 8419545 YP_003198577.1 CDS Dret_1715 NC_013223.1 1970492 1970977 D KEGG: dde:Dde_0060 hypothetical protein; hypothetical protein 1970492..1970977 Desulfohalobium retbaense DSM 5692 8419546 YP_003198578.1 CDS Dret_1716 NC_013223.1 1971111 1971842 D KEGG: noc:Noc_A0014 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parB-like partition protein 1971111..1971842 Desulfohalobium retbaense DSM 5692 8419547 YP_003198579.1 CDS Dret_1717 NC_013223.1 1972104 1972709 R KEGG: hypothetical protein LOC687931; hypothetical protein complement(1972104..1972709) Desulfohalobium retbaense DSM 5692 8419548 YP_003198580.1 CDS Dret_1718 NC_013223.1 1973194 1973307 R hypothetical protein complement(1973194..1973307) Desulfohalobium retbaense DSM 5692 8419549 YP_003198581.1 CDS asnC NC_013223.1 1978983 1980374 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(1978983..1980374) Desulfohalobium retbaense DSM 5692 8419555 YP_003198582.1 CDS Dret_1720 NC_013223.1 1980489 1982825 R KEGG: dde:Dde_1519 replication restart DNA helicase PriA; TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; primosomal protein N' complement(1980489..1982825) Desulfohalobium retbaense DSM 5692 8419556 YP_003198583.1 CDS Dret_1721 NC_013223.1 1982825 1983589 R hypothetical protein complement(1982825..1983589) Desulfohalobium retbaense DSM 5692 8419557 YP_003198584.1 CDS Dret_1722 NC_013223.1 1983589 1984455 R PFAM: Nucleotidyl transferase; KEGG: dma:DMR_25690 UTP--glucose-1-phosphate uridylyltransferase; nucleotidyl transferase complement(1983589..1984455) Desulfohalobium retbaense DSM 5692 8419558 YP_003198585.1 CDS glmM NC_013223.1 1984923 1986275 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(1984923..1986275) Desulfohalobium retbaense DSM 5692 8419559 YP_003198586.1 CDS Dret_1724 NC_013223.1 1986272 1987234 R PFAM: YbbR family protein; KEGG: dma:DMR_25710 hypothetical protein; hypothetical protein complement(1986272..1987234) Desulfohalobium retbaense DSM 5692 8419560 YP_003198587.1 CDS Dret_1725 NC_013223.1 1987319 1988077 R PFAM: protein of unknown function DUF147; KEGG: dvl:Dvul_1785 hypothetical protein; hypothetical protein complement(1987319..1988077) Desulfohalobium retbaense DSM 5692 8419561 YP_003198588.1 CDS Dret_1726 NC_013223.1 1988319 1989188 R KEGG: dde:Dde_1514 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase complement(1988319..1989188) Desulfohalobium retbaense DSM 5692 8419562 YP_003198589.1 CDS Dret_1727 NC_013223.1 1989185 1991095 R KEGG: dma:DMR_25740 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(1989185..1991095) Desulfohalobium retbaense DSM 5692 8419563 YP_003198590.1 CDS Dret_1728 NC_013223.1 1991351 1992763 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(1991351..1992763) Desulfohalobium retbaense DSM 5692 8419565 YP_003198591.1 CDS Dret_1729 NC_013223.1 1992853 1994076 R KEGG: dde:Dde_2531 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase; argininosuccinate synthase complement(1992853..1994076) Desulfohalobium retbaense DSM 5692 8419566 YP_003198592.1 CDS Dret_1730 NC_013223.1 1994178 1994360 R hypothetical protein complement(1994178..1994360) Desulfohalobium retbaense DSM 5692 8419567 YP_003198593.1 CDS Dret_1731 NC_013223.1 1994330 1995244 R TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: dvm:DvMF_0046 ornithine carbamoyltransferase; ornithine carbamoyltransferase complement(1994330..1995244) Desulfohalobium retbaense DSM 5692 8419568 YP_003198594.1 CDS Dret_1732 NC_013223.1 1995353 1995787 R PFAM: protein of unknown function UPF0054; KEGG: dma:DMR_28860 hypothetical protein; hypothetical protein complement(1995353..1995787) Desulfohalobium retbaense DSM 5692 8419569 YP_003198595.1 CDS Dret_1733 NC_013223.1 1995784 1996764 R PFAM: PhoH family protein; K Homology, type 1, subgroup; KEGG: dma:DMR_28840 PhoH-like protein; PhoH family protein complement(1995784..1996764) Desulfohalobium retbaense DSM 5692 8419570 YP_003198596.1 CDS Dret_1734 NC_013223.1 1997057 1998046 R KEGG: dde:Dde_0709 GTP cyclohydrolase subunit MoaA; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A complement(1997057..1998046) Desulfohalobium retbaense DSM 5692 8419571 YP_003198597.1 CDS Dret_1735 NC_013223.1 1998152 1999708 R PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: dma:DMR_28830 hypothetical protein; hypothetical protein complement(1998152..1999708) Desulfohalobium retbaense DSM 5692 8419572 YP_003198598.1 CDS Dret_1736 NC_013223.1 1999822 2000184 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: dvm:DvMF_0008 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator complement(1999822..2000184) Desulfohalobium retbaense DSM 5692 8419573 YP_003198599.1 CDS Dret_1737 NC_013223.1 2000897 2001637 D PFAM: Methyltransferase-16, putative; Methyltransferase type 12; KEGG: dvl:Dvul_1029 methyltransferase small; methyltransferase-16 2000897..2001637 Desulfohalobium retbaense DSM 5692 8419577 YP_003198600.1 CDS Dret_1738 NC_013223.1 2001627 2003345 D PFAM: protein of unknown function DUF181; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: dma:DMR_15900 hypothetical protein; hypothetical protein 2001627..2003345 Desulfohalobium retbaense DSM 5692 8419578 YP_003198601.1 CDS Dret_1739 NC_013223.1 2003540 2003857 D KEGG: dma:DMR_15890 sulfite reductase gamma subunit; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; TusE/DsrC/DsvC family sulfur relay protein 2003540..2003857 Desulfohalobium retbaense DSM 5692 8419579 YP_003198602.1 CDS Dret_1740 NC_013223.1 2004101 2004466 D KEGG: dvm:DvMF_0872 hypothetical protein; hypothetical protein 2004101..2004466 Desulfohalobium retbaense DSM 5692 8419580 YP_003198603.1 CDS Dret_1741 NC_013223.1 2004495 2005322 R PFAM: glycosyl transferase family 2; KEGG: dol:Dole_0985 glycosyl transferase family protein; family 2 glycosyl transferase complement(2004495..2005322) Desulfohalobium retbaense DSM 5692 8419581 YP_003198604.1 CDS Dret_1742 NC_013223.1 2005333 2006448 D PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1656 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 2005333..2006448 Desulfohalobium retbaense DSM 5692 8419582 YP_003198605.1 CDS Dret_1743 NC_013223.1 2006445 2007188 D PFAM: ApbE family lipoprotein; KEGG: dma:DMR_30660 hypothetical protein; hypothetical protein 2006445..2007188 Desulfohalobium retbaense DSM 5692 8419583 YP_003198606.1 CDS Dret_1744 NC_013223.1 2007819 2008469 R TIGRFAM: thymidylate synthase, flavin-dependent; PFAM: thymidylate synthase complementing protein ThyX; KEGG: dat:HRM2_18050 ThyX; thymidylate synthase, flavin-dependent complement(2007819..2008469) Desulfohalobium retbaense DSM 5692 8419584 YP_003198607.1 CDS ruvB NC_013223.1 2008481 2009449 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(2008481..2009449) Desulfohalobium retbaense DSM 5692 8419585 YP_003198608.1 CDS ruvA NC_013223.1 2009446 2010060 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(2009446..2010060) Desulfohalobium retbaense DSM 5692 8419586 YP_003198609.1 CDS ruvC NC_013223.1 2010136 2010648 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(2010136..2010648) Desulfohalobium retbaense DSM 5692 8419587 YP_003198610.1 CDS Dret_1748 NC_013223.1 2010667 2011416 R PFAM: protein of unknown function DUF28; KEGG: dvu:DVU2259 hypothetical protein; hypothetical protein complement(2010667..2011416) Desulfohalobium retbaense DSM 5692 8419588 YP_003198611.1 CDS Dret_1749 NC_013223.1 2011571 2012170 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dma:DMR_30870 ribosomal RNA large subunit methyltransferase J; ribosomal RNA methyltransferase RrmJ/FtsJ complement(2011571..2012170) Desulfohalobium retbaense DSM 5692 8419589 YP_003198612.1 CDS Dret_1750 NC_013223.1 2012483 2014843 R PFAM: Transketolase domain protein; Transketolase central region; KEGG: MGC69114; transketolase; K00615 transketolase; transketolase complement(2012483..2014843) Desulfohalobium retbaense DSM 5692 8419591 YP_003198613.1 CDS Dret_1751 NC_013223.1 2015257 2016435 D TIGRFAM: TraB family protein; PFAM: TraB determinant protein; KEGG: dol:Dole_2685 TraB family protein; TraB family protein 2015257..2016435 Desulfohalobium retbaense DSM 5692 8419592 YP_003198614.1 CDS Dret_1752 NC_013223.1 2016677 2018170 D PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: sat:SYN_00178 superfamily II DNA/RNA helicase; DEAD/DEAH box helicase 2016677..2018170 Desulfohalobium retbaense DSM 5692 8419593 YP_003198615.1 CDS Dret_1753 NC_013223.1 2018601 2018864 D PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1; RNP-1 like RNA-binding protein 2018601..2018864 Desulfohalobium retbaense DSM 5692 8419594 YP_003198616.1 CDS Dret_1754 NC_013223.1 2019122 2019418 D KEGG: dvm:DvMF_0606 hypothetical protein; hypothetical protein 2019122..2019418 Desulfohalobium retbaense DSM 5692 8419595 YP_003198617.1 CDS Dret_1755 NC_013223.1 2019643 2020818 D PFAM: (Uracil-5)-methyltransferase; KEGG: psa:PST_2670 23S rRNA 5-methyluridine methyltransferase; (uracil-5)-methyltransferase 2019643..2020818 Desulfohalobium retbaense DSM 5692 8419596 YP_003198618.1 CDS Dret_1756 NC_013223.1 2020861 2022555 D PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_1725 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 2020861..2022555 Desulfohalobium retbaense DSM 5692 8419597 YP_003198619.1 CDS Dret_1757 NC_013223.1 2022610 2022768 D PFAM: protein of unknown function UPF0057; KEGG: pat:Patl_4140 hypothetical protein; hypothetical protein 2022610..2022768 Desulfohalobium retbaense DSM 5692 8419598 YP_003198620.1 CDS Dret_1758 NC_013223.1 2023374 2025275 R TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: dde:Dde_2200 1-deoxy-D-xylulose-5-phosphate synthase; deoxyxylulose-5-phosphate synthase complement(2023374..2025275) Desulfohalobium retbaense DSM 5692 8419599 YP_003198621.1 CDS Dret_1759 NC_013223.1 2025346 2026224 R PFAM: Polyprenyl synthetase; KEGG: dde:Dde_2201 farnesyl-diphosphate synthase; polyprenyl synthetase complement(2025346..2026224) Desulfohalobium retbaense DSM 5692 8419600 YP_003198622.1 CDS Dret_1760 NC_013223.1 2026205 2026477 R PFAM: Exonuclease VII small subunit; KEGG: dde:Dde_2202 exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit complement(2026205..2026477) Desulfohalobium retbaense DSM 5692 8419601 YP_003198623.1 CDS Dret_1761 NC_013223.1 2026544 2027911 R KEGG: dma:DMR_24350 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit complement(2026544..2027911) Desulfohalobium retbaense DSM 5692 8419602 YP_003198624.1 CDS Dret_1762 NC_013223.1 2028017 2029756 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(2028017..2029756) Desulfohalobium retbaense DSM 5692 8419603 YP_003198625.1 CDS Dret_1763 NC_013223.1 2029759 2030331 R hypothetical protein complement(2029759..2030331) Desulfohalobium retbaense DSM 5692 8419604 YP_003198626.1 CDS ispG NC_013223.1 2030353 2031477 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2030353..2031477) Desulfohalobium retbaense DSM 5692 8419605 YP_003198627.1 CDS Dret_1765 NC_013223.1 2031544 2032224 R PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dvm:DvMF_0181 phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase complement(2031544..2032224) Desulfohalobium retbaense DSM 5692 8419606 YP_003198628.1 CDS Dret_1766 NC_013223.1 2032390 2032491 R KEGG: vha:VIBHAR_02897 hypothetical protein; hypothetical protein complement(2032390..2032491) Desulfohalobium retbaense DSM 5692 8419607 YP_003198629.1 CDS Dret_1767 NC_013223.1 2032513 2033991 R PFAM: sodium:neurotransmitter symporter; KEGG: dat:HRM2_44940 Na+-dependent transporter; sodium:neurotransmitter symporter complement(2032513..2033991) Desulfohalobium retbaense DSM 5692 8419608 YP_003198630.1 CDS Dret_1768 NC_013223.1 2034584 2036176 D PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: dvl:Dvul_2138 5-enolpyruvylshikimate-3- phosphate synthase-like protein; 3-phosphoshikimate 1- carboxyvinyltransferase 2034584..2036176 Desulfohalobium retbaense DSM 5692 8419609 YP_003198631.1 CDS Dret_1769 NC_013223.1 2036142 2036408 D KEGG: dvm:DvMF_2890 hypothetical protein; hypothetical protein 2036142..2036408 Desulfohalobium retbaense DSM 5692 8419610 YP_003198632.1 CDS Dret_1770 NC_013223.1 2036413 2037858 D PFAM: histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; histidine kinase A domain protein; KEGG: sat:SYN_01077 sensor proteinluxq; putative PAS/PAC sensor protein 2036413..2037858 Desulfohalobium retbaense DSM 5692 8419611 YP_003198633.1 CDS Dret_1771 NC_013223.1 2037864 2039789 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2037864..2039789 Desulfohalobium retbaense DSM 5692 8419612 YP_003198634.1 CDS Dret_1772 NC_013223.1 2040061 2041941 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dde:Dde_1407 peptidyl-prolyl cis-trans isomerse domain-containing protein; PpiC-type peptidyl-prolyl cis-trans isomerase 2040061..2041941 Desulfohalobium retbaense DSM 5692 8419613 YP_003198635.1 CDS Dret_1773 NC_013223.1 2042072 2043265 R PFAM: UMUC domain protein DNA-repair protein; KEGG: sfu:Sfum_0738 DNA-directed DNA polymerase; DNA-directed DNA polymerase complement(2042072..2043265) Desulfohalobium retbaense DSM 5692 8419614 YP_003198636.1 CDS Dret_1774 NC_013223.1 2043436 2044155 D PFAM: beta-lactamase domain protein; KEGG: dvl:Dvul_0081 beta-lactamase domain- containing protein; beta-lactamase domain-containing protein 2043436..2044155 Desulfohalobium retbaense DSM 5692 8419615 YP_003198637.1 CDS Dret_1775 NC_013223.1 2044655 2045869 R TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: sat:SYN_02732 protein HipA; HipA N-terminal domain-containing protein complement(2044655..2045869) Desulfohalobium retbaense DSM 5692 8419616 YP_003198638.1 CDS Dret_1776 NC_013223.1 2045866 2046105 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rhi:NGR234_237 Y4mF; XRE family transcriptional regulator complement(2045866..2046105) Desulfohalobium retbaense DSM 5692 8419617 YP_003198639.1 CDS Dret_1777 NC_013223.1 2046261 2048171 R KEGG: lip:LI0701 nuclease subunit of the excinuclease complex; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; helix-hairpin- helix motif; UvrB/UvrC protein; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1; excinuclease ABC subunit C complement(2046261..2048171) Desulfohalobium retbaense DSM 5692 8419618 YP_003198640.1 CDS Dret_1778 NC_013223.1 2048528 2049874 R PFAM: Peptidase M23; KEGG: dma:DMR_28080 peptidase M23B family protein; peptidase M23 complement(2048528..2049874) Desulfohalobium retbaense DSM 5692 8419619 YP_003198641.1 CDS Dret_1779 NC_013223.1 2049947 2051278 R PFAM: peptidase M48 Ste24p; KEGG: dol:Dole_2972 peptidase M48 Ste24p; peptidase M48 Ste24p complement(2049947..2051278) Desulfohalobium retbaense DSM 5692 8419620 YP_003198642.1 CDS Dret_1780 NC_013223.1 2051462 2051926 R PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: pca:Pcar_1772 protein-tyrosine-phosphatase; protein tyrosine phosphatase complement(2051462..2051926) Desulfohalobium retbaense DSM 5692 8419621 YP_003198643.1 CDS Dret_1781 NC_013223.1 2052055 2052378 R PFAM: Carboxymuconolactone decarboxylase; KEGG: dma:DMR_20120 hypothetical protein; Carboxymuconolactone decarboxylase complement(2052055..2052378) Desulfohalobium retbaense DSM 5692 8419622 YP_003198644.1 CDS Dret_1782 NC_013223.1 2052779 2053018 R TIGRFAM: redox-active disulfide protein 2; KEGG: dal:Dalk_4732 redox-active disulfide protein 2; redox-active disulfide protein 2 complement(2052779..2053018) Desulfohalobium retbaense DSM 5692 8419623 YP_003198645.1 CDS Dret_1783 NC_013223.1 2053228 2054316 R PFAM: permease; KEGG: dal:Dalk_4734 permease; permease complement(2053228..2054316) Desulfohalobium retbaense DSM 5692 8419624 YP_003198646.1 CDS Dret_1784 NC_013223.1 2054439 2054783 R PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: dps:DP0944 ArsR-family transcription regulator; ArsR family transcriptional regulator complement(2054439..2054783) Desulfohalobium retbaense DSM 5692 8419625 YP_003198647.1 CDS Dret_1785 NC_013223.1 2055086 2056009 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dma:DMR_41050 hypothetical membrane protein; 4Fe-4S ferredoxin complement(2055086..2056009) Desulfohalobium retbaense DSM 5692 8419626 YP_003198648.1 CDS Dret_1786 NC_013223.1 2056010 2056153 R hypothetical protein complement(2056010..2056153) Desulfohalobium retbaense DSM 5692 8419627 YP_003198649.1 CDS Dret_1787 NC_013223.1 2056156 2056464 R hypothetical protein complement(2056156..2056464) Desulfohalobium retbaense DSM 5692 8419628 YP_003198650.1 CDS Dret_1788 NC_013223.1 2056606 2057094 R PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_2114 thioredoxin family protein; redoxin domain-containing protein complement(2056606..2057094) Desulfohalobium retbaense DSM 5692 8419629 YP_003198651.1 CDS Dret_1789 NC_013223.1 2057280 2057624 R PFAM: protein of unknown function DUF498; KEGG: 1810020D17Rik; RIKEN cDNA 1810020D17 gene ; K09008 hypothetical protein; hypothetical protein complement(2057280..2057624) Desulfohalobium retbaense DSM 5692 8419630 YP_003198652.1 CDS Dret_1790 NC_013223.1 2057799 2058722 R PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_1696 radical SAM domain protein; radical SAM protein complement(2057799..2058722) Desulfohalobium retbaense DSM 5692 8419631 YP_003198653.1 CDS Dret_1791 NC_013223.1 2058993 2060024 R PFAM: protein of unknown function DUF1566; KEGG: dde:Dde_1619 hypothetical protein; hypothetical protein complement(2058993..2060024) Desulfohalobium retbaense DSM 5692 8419632 YP_003198654.1 CDS Dret_1792 NC_013223.1 2060074 2060964 R PFAM: Patatin; KEGG: she:Shewmr4_3733 patatin; patatin complement(2060074..2060964) Desulfohalobium retbaense DSM 5692 8419633 YP_003198655.1 CDS Dret_1793 NC_013223.1 2060974 2061636 R PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dma:DMR_01740 putative potassium transport systems NAD-binding component; TrkA-N domain-containing protein complement(2060974..2061636) Desulfohalobium retbaense DSM 5692 8419634 YP_003198656.1 CDS Dret_1794 NC_013223.1 2061705 2063066 R PFAM: cation transporter; KEGG: dma:DMR_01730 putative potassium uptake system membrane components; H(+)-transporting two-sector ATPase complement(2061705..2063066) Desulfohalobium retbaense DSM 5692 8419635 YP_003198657.1 CDS Dret_1795 NC_013223.1 2063079 2064248 R PFAM: sodium/hydrogen exchanger; KEGG: pca:Pcar_0178 Na+/H+ antiporter; sodium/hydrogen exchanger complement(2063079..2064248) Desulfohalobium retbaense DSM 5692 8419636 YP_003198658.1 CDS Dret_1796 NC_013223.1 2064378 2065793 R PFAM: TrkA-N domain protein; TrkA-C domain protein; UspA domain protein; KEGG: pca:Pcar_0177 K+ transport systems, NAD- binding component; TrkA-N domain-containing protein complement(2064378..2065793) Desulfohalobium retbaense DSM 5692 8419637 YP_003198659.1 CDS Dret_1797 NC_013223.1 2066200 2067174 R KEGG: mmw:Mmwyl1_1898 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(2066200..2067174) Desulfohalobium retbaense DSM 5692 8419638 YP_003198660.1 CDS Dret_1798 NC_013223.1 2067554 2067931 D hypothetical protein 2067554..2067931 Desulfohalobium retbaense DSM 5692 8419639 YP_003198661.1 CDS Dret_1799 NC_013223.1 2068062 2068634 D PFAM: protein of unknown function DUF204; KEGG: dvl:Dvul_0455 hypothetical protein; hypothetical protein 2068062..2068634 Desulfohalobium retbaense DSM 5692 8419640 YP_003198662.1 CDS Dret_1800 NC_013223.1 2068709 2069164 D PFAM: cytochrome c class III; KEGG: dma:DMR_02560 cytochrome c3; cytochrome c class III 2068709..2069164 Desulfohalobium retbaense DSM 5692 8419641 YP_003198663.1 CDS Dret_1801 NC_013223.1 2069254 2069814 R SMART: Tetratricopeptide repeat; KEGG: dvm:DvMF_3127 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(2069254..2069814) Desulfohalobium retbaense DSM 5692 8419642 YP_003198664.1 CDS Dret_1802 NC_013223.1 2069807 2071729 R PFAM: cytochrome c assembly protein; KEGG: dma:DMR_22500 cytochrome c-type biogenesis protein CcmF; cytochrome c assembly protein complement(2069807..2071729) Desulfohalobium retbaense DSM 5692 8419643 YP_003198665.1 CDS Dret_1803 NC_013223.1 2071961 2072416 R PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: ppr:PBPRA3092 hypothetical protein; sigma E positive regulator RseC/MucC complement(2071961..2072416) Desulfohalobium retbaense DSM 5692 8419644 YP_003198666.1 CDS Dret_1804 NC_013223.1 2072457 2072747 R PFAM: Protein of unknown function DUF2078, membrane; KEGG: sat:SYN_02429 hypothetical protein; hypothetical protein complement(2072457..2072747) Desulfohalobium retbaense DSM 5692 8419645 YP_003198667.1 CDS Dret_1805 NC_013223.1 2072820 2073473 R KEGG: GG21082 gene product from transcript GG21082- RA; hypothetical protein complement(2072820..2073473) Desulfohalobium retbaense DSM 5692 8419646 YP_003198668.1 CDS Dret_1806 NC_013223.1 2073998 2074768 D hypothetical protein 2073998..2074768 Desulfohalobium retbaense DSM 5692 8419647 YP_003198669.1 CDS Dret_1807 NC_013223.1 2074987 2076024 D PFAM: molybdopterin binding domain; KEGG: dma:DMR_05970 molybdopterin binding domain protein; molybdopterin binding domain-containing protein 2074987..2076024 Desulfohalobium retbaense DSM 5692 8419648 YP_003198670.1 CDS Dret_1808 NC_013223.1 2076118 2078832 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: dat:HRM2_07080 Mop1; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 2076118..2078832 Desulfohalobium retbaense DSM 5692 8419649 YP_003198671.1 CDS Dret_1809 NC_013223.1 2079112 2081418 D KEGG: gur:Gura_0999 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 2079112..2081418 Desulfohalobium retbaense DSM 5692 8419650 YP_003198672.1 CDS Dret_1810 NC_013223.1 2081418 2081633 D KEGG: dds:Ddes_1821 hypothetical protein; hypothetical protein 2081418..2081633 Desulfohalobium retbaense DSM 5692 8419651 YP_003198673.1 CDS Dret_1811 NC_013223.1 2081643 2082350 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pca:Pcar_0223 SAM-dependent methyltransferase; type 11 methyltransferase 2081643..2082350 Desulfohalobium retbaense DSM 5692 8419652 YP_003198674.1 CDS Dret_1812 NC_013223.1 2082358 2082816 D PFAM: C_GCAxxG_C_C family protein; KEGG: ppd:Ppro_1533 hypothetical protein; C_GCAxxG_C_C family protein 2082358..2082816 Desulfohalobium retbaense DSM 5692 8419653 YP_003198675.1 CDS Dret_1813 NC_013223.1 2082806 2084134 D PFAM: Radical SAM domain protein; KEGG: dde:Dde_3544 elongator protein 3/MiaB/NifB; radical SAM protein 2082806..2084134 Desulfohalobium retbaense DSM 5692 8419654 YP_003198676.1 CDS Dret_1814 NC_013223.1 2084555 2085928 D KEGG: gur:Gura_1004 coenzyme F390 synthetase-like protein; coenzyme F390 synthetase-like protein 2084555..2085928 Desulfohalobium retbaense DSM 5692 8419655 YP_003198677.1 CDS Dret_1815 NC_013223.1 2085912 2086946 D KEGG: gur:Gura_1005 hypothetical protein; hypothetical protein 2085912..2086946 Desulfohalobium retbaense DSM 5692 8419656 YP_003198678.1 CDS Dret_1816 NC_013223.1 2086947 2088065 D KEGG: sfu:Sfum_1317 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 2086947..2088065 Desulfohalobium retbaense DSM 5692 8419657 YP_003198679.1 CDS Dret_1817 NC_013223.1 2088062 2088688 D PFAM: Phosphoglycerate mutase; KEGG: gur:Gura_1007 phosphoglycerate mutase; phosphoglycerate mutase 2088062..2088688 Desulfohalobium retbaense DSM 5692 8419658 YP_003198680.1 CDS Dret_1818 NC_013223.1 2088695 2089420 R KEGG: dol:Dole_0215 hypothetical protein; hypothetical protein complement(2088695..2089420) Desulfohalobium retbaense DSM 5692 8419659 YP_003198681.1 CDS Dret_1819 NC_013223.1 2089543 2090604 R KEGG: dat:HRM2_01680 putative molybdenum ABC-type transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase complement(2089543..2090604) Desulfohalobium retbaense DSM 5692 8419660 YP_003198682.1 CDS Dret_1820 NC_013223.1 2090601 2091386 R TIGRFAM: NifC-like ABC-type porter; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_01690 putative molybdenum ABC-type transporter, permease subunit; ABC transporter complement(2090601..2091386) Desulfohalobium retbaense DSM 5692 8419661 YP_003198683.1 CDS Dret_1821 NC_013223.1 2091371 2092135 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: dat:HRM2_01700 ModA3; molybdenum ABC transporter periplasmic molybdate-binding protein complement(2091371..2092135) Desulfohalobium retbaense DSM 5692 8419662 YP_003198684.1 CDS Dret_1822 NC_013223.1 2092229 2092372 D hypothetical protein 2092229..2092372 Desulfohalobium retbaense DSM 5692 8419663 YP_003198685.1 CDS Dret_1823 NC_013223.1 2092392 2093900 D PFAM: deoxyribodipyrimidine photolyase-related protein; DNA photolyase FAD-binding; KEGG: pat:Patl_2797 deoxyribodipyrimidine photolyase-related protein; deoxyribodipyrimidine photolyase-like protein 2092392..2093900 Desulfohalobium retbaense DSM 5692 8419664 YP_003198686.1 CDS Dret_1824 NC_013223.1 2094873 2095127 D KEGG: pin:Ping_0486 hypothetical protein; hypothetical protein 2094873..2095127 Desulfohalobium retbaense DSM 5692 8419665 YP_003198687.1 CDS Dret_1825 NC_013223.1 2095407 2096093 D KEGG: cbc:CbuK_0049 ATP synthase B chain; hypothetical protein 2095407..2096093 Desulfohalobium retbaense DSM 5692 8419666 YP_003198688.1 CDS Dret_1826 NC_013223.1 2096090 2096629 D hypothetical protein 2096090..2096629 Desulfohalobium retbaense DSM 5692 8419667 YP_003198689.1 CDS Dret_1827 NC_013223.1 2096680 2098449 D produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 2096680..2098449 Desulfohalobium retbaense DSM 5692 8419668 YP_003198690.1 CDS Dret_1828 NC_013223.1 2098442 2099773 D produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 2098442..2099773 Desulfohalobium retbaense DSM 5692 8419669 YP_003198691.1 CDS Dret_1829 NC_013223.1 2099751 2100356 D produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 2099751..2100356 Desulfohalobium retbaense DSM 5692 8419670 YP_003198692.1 CDS Dret_1830 NC_013223.1 2100353 2102125 D PFAM: V-type ATPase 116 kDa subunit; KEGG: gur:Gura_0418 H(+)-transporting two-sector ATPase; V-type ATPase 116 kDa subunit 2100353..2102125 Desulfohalobium retbaense DSM 5692 8419671 YP_003198693.1 CDS Dret_1831 NC_013223.1 2102400 2102873 D produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 2102400..2102873 Desulfohalobium retbaense DSM 5692 8419672 YP_003198694.1 CDS Dret_1832 NC_013223.1 2103080 2103541 R KEGG: maq:Maqu_1646 hypothetical protein; hypothetical protein complement(2103080..2103541) Desulfohalobium retbaense DSM 5692 8419673 YP_003198695.1 CDS Dret_1833 NC_013223.1 2103826 2104416 R KEGG: dol:Dole_2802 hypothetical protein; hypothetical protein complement(2103826..2104416) Desulfohalobium retbaense DSM 5692 8419674 YP_003198696.1 CDS Dret_1834 NC_013223.1 2104409 2104951 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dol:Dole_2803 protein of unknown function DUF395 YeeE/YedE; hypothetical protein complement(2104409..2104951) Desulfohalobium retbaense DSM 5692 8419675 YP_003198697.1 CDS Dret_1835 NC_013223.1 2104944 2105477 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dol:Dole_2804 hypothetical protein; hypothetical protein complement(2104944..2105477) Desulfohalobium retbaense DSM 5692 8419676 YP_003198698.1 CDS Dret_1836 NC_013223.1 2105484 2106599 R PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: dol:Dole_2805 rhodanese domain-containing protein; rhodanese domain-containing protein complement(2105484..2106599) Desulfohalobium retbaense DSM 5692 8419677 YP_003198699.1 CDS Dret_1837 NC_013223.1 2106831 2108465 R KEGG: pca:Pcar_0911 sensory box histidine kinase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase complement(2106831..2108465) Desulfohalobium retbaense DSM 5692 8419678 YP_003198700.1 CDS Dret_1838 NC_013223.1 2108462 2109781 R PFAM: major facilitator superfamily MFS_1; KEGG: pca:Pcar_1854 major facilitator superfamily permease/BtlA-like; major facilitator superfamily protein complement(2108462..2109781) Desulfohalobium retbaense DSM 5692 8419679 YP_003198701.1 CDS Dret_1839 NC_013223.1 2110076 2110465 D PFAM: protein of unknown function UPF0066; KEGG: dol:Dole_1581 hypothetical protein; hypothetical protein 2110076..2110465 Desulfohalobium retbaense DSM 5692 8419680 YP_003198702.1 CDS Dret_1840 NC_013223.1 2110587 2111243 R PFAM: SNARE associated Golgi protein; KEGG: dol:Dole_2781 SNARE associated Golgi protein; hypothetical protein complement(2110587..2111243) Desulfohalobium retbaense DSM 5692 8419681 YP_003198703.1 CDS Dret_1841 NC_013223.1 2112581 2113000 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_0703 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2112581..2113000 Desulfohalobium retbaense DSM 5692 8419682 YP_003198704.1 CDS Dret_1842 NC_013223.1 2112993 2114849 D KEGG: dal:Dalk_0704 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase 2112993..2114849 Desulfohalobium retbaense DSM 5692 8419683 YP_003198705.1 CDS Dret_1843 NC_013223.1 2115198 2115650 D KEGG: dps:DP0122 17 kDa surface antigen; 17 kDa surface antigen 2115198..2115650 Desulfohalobium retbaense DSM 5692 8419684 YP_003198706.1 CDS Dret_1844 NC_013223.1 2116165 2116842 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dal:Dalk_0291 methyltransferase type 11; type 11 methyltransferase complement(2116165..2116842) Desulfohalobium retbaense DSM 5692 8419685 YP_003198707.1 CDS Dret_1845 NC_013223.1 2116967 2117602 D PFAM: regulatory protein TetR; KEGG: dde:Dde_2217 TetR family transcriptional regulator; TetR family transcriptional regulator 2116967..2117602 Desulfohalobium retbaense DSM 5692 8419686 YP_003198708.1 CDS Dret_1846 NC_013223.1 2117596 2117739 D KEGG: dde:Dde_1338 hypothetical protein; hypothetical protein 2117596..2117739 Desulfohalobium retbaense DSM 5692 8419687 YP_003198709.1 CDS Dret_1847 NC_013223.1 2117767 2119398 D PFAM: Na+/solute symporter; KEGG: dde:Dde_1337 sodium/proline symporter (proline permease); Na+/solute symporter 2117767..2119398 Desulfohalobium retbaense DSM 5692 8419688 YP_003198710.1 CDS Dret_1848 NC_013223.1 2119840 2120550 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_1342 two component transcriptional regulator, winged helix family; two component transcriptional regulator, winged helix family complement(2119840..2120550) Desulfohalobium retbaense DSM 5692 8419689 YP_003198711.1 CDS Dret_1849 NC_013223.1 2120534 2121568 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gur:Gura_1335 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(2120534..2121568) Desulfohalobium retbaense DSM 5692 8419690 YP_003198712.1 CDS Dret_1850 NC_013223.1 2121623 2121967 R hypothetical protein complement(2121623..2121967) Desulfohalobium retbaense DSM 5692 8419691 YP_003198713.1 CDS Dret_1851 NC_013223.1 2122012 2123133 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: dds:Ddes_0977 2-nitropropane dioxygenase NPD; 2-nitropropane dioxygenase 2122012..2123133 Desulfohalobium retbaense DSM 5692 8419692 YP_003198714.1 CDS Dret_1852 NC_013223.1 2123525 2124451 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_0146 putative glycine betaine/L- proline ABC transporter, solute-binding protein; glycine/betaine ABC transporter substrate-binding protein 2123525..2124451 Desulfohalobium retbaense DSM 5692 8419693 YP_003198715.1 CDS Dret_1853 NC_013223.1 2124645 2126711 R PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: dol:Dole_0855 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(2124645..2126711) Desulfohalobium retbaense DSM 5692 8419694 YP_003198716.1 CDS Dret_1854 NC_013223.1 2126954 2127307 R KEGG: pca:Pcar_0926 sensory box protein; hypothetical protein complement(2126954..2127307) Desulfohalobium retbaense DSM 5692 8419695 YP_003198717.1 CDS Dret_1855 NC_013223.1 2127322 2127708 R hypothetical protein complement(2127322..2127708) Desulfohalobium retbaense DSM 5692 8419696 YP_003198718.1 CDS Dret_1856 NC_013223.1 2128183 2129169 D PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: dma:DMR_30690 curved DNA-binding protein; chaperone DnaJ domain-containing protein 2128183..2129169 Desulfohalobium retbaense DSM 5692 8419697 YP_003198719.1 CDS Dret_1857 NC_013223.1 2129316 2129633 D KEGG: dvm:DvMF_0568 hypothetical protein; hypothetical protein 2129316..2129633 Desulfohalobium retbaense DSM 5692 8419698 YP_003198720.1 CDS Dret_1858 NC_013223.1 2129829 2132429 D KEGG: dvm:DvMF_0567 ATP-dependent chaperone ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; AAA ATPase central domain protein; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB 2129829..2132429 Desulfohalobium retbaense DSM 5692 8419699 YP_003198721.1 CDS Dret_1859 NC_013223.1 2132826 2133167 R PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: hypothetical protein; heat shock protein DnaJ domain-containing protein complement(2132826..2133167) Desulfohalobium retbaense DSM 5692 8419702 YP_003198722.1 CDS Dret_1860 NC_013223.1 2133215 2133466 R hypothetical protein complement(2133215..2133466) Desulfohalobium retbaense DSM 5692 8419703 YP_003198723.1 CDS Dret_1861 NC_013223.1 2133542 2133940 R KEGG: dol:Dole_2162 alkyl hydroperoxide reductase; alkyl hydroperoxide reductase complement(2133542..2133940) Desulfohalobium retbaense DSM 5692 8419704 YP_003198724.1 CDS Dret_1862 NC_013223.1 2134010 2134264 R KEGG: dol:Dole_2161 peroxiredoxin-like protein; peroxiredoxin-like protein complement(2134010..2134264) Desulfohalobium retbaense DSM 5692 8419705 YP_003198725.1 CDS Dret_1863 NC_013223.1 2134455 2135093 R PFAM: cyclase family protein; KEGG: dal:Dalk_2911 cyclase family protein; cyclase family protein complement(2134455..2135093) Desulfohalobium retbaense DSM 5692 8419706 YP_003198726.1 CDS Dret_1864 NC_013223.1 2135595 2135876 D KEGG: dvl:Dvul_1334 hypothetical protein; hypothetical protein 2135595..2135876 Desulfohalobium retbaense DSM 5692 8419707 YP_003198727.1 CDS Dret_1865 NC_013223.1 2136104 2137324 D catalyzes the transamination of diaminopimelate with 2-oxoglutarate to produce tetrahydrodipicolinate and glutamate; diaminopimelate aminotransferase 2136104..2137324 Desulfohalobium retbaense DSM 5692 8419708 YP_003198728.1 CDS Dret_1866 NC_013223.1 2137327 2139207 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 2137327..2139207 Desulfohalobium retbaense DSM 5692 8419709 YP_003198729.1 CDS Dret_1867 NC_013223.1 2140216 2141073 D PFAM: CBS domain containing protein; transporter- associated region; SMART: CBS domain containing protein; KEGG: dde:Dde_1807 CBS; hypothetical protein 2140216..2141073 Desulfohalobium retbaense DSM 5692 8419710 YP_003198730.1 CDS Dret_1868 NC_013223.1 2141076 2142593 D TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dma:DMR_26090 apolipoprotein N- acyltransferase; apolipoprotein N-acyltransferase 2141076..2142593 Desulfohalobium retbaense DSM 5692 8419711 YP_003198731.1 CDS Dret_1869 NC_013223.1 2143058 2144174 D KEGG: GH18944 gene product from transcript GH18944- RA; hypothetical protein join(2143058..2143132,2143134..2144174) Desulfohalobium retbaense DSM 5692 8419712 YP_003198732.1 CDS Dret_1870 NC_013223.1 2144561 2144836 D PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: dde:Dde_1799 histone-like DNA-binding protein; histone family protein DNA-binding protein 2144561..2144836 Desulfohalobium retbaense DSM 5692 8419713 YP_003198733.1 CDS Dret_1871 NC_013223.1 2144833 2145000 D hypothetical protein 2144833..2145000 Desulfohalobium retbaense DSM 5692 8419714 YP_003198734.1 CDS Dret_1872 NC_013223.1 2145130 2145708 D KEGG: dma:DMR_26140 hypothetical protein; hypothetical protein 2145130..2145708 Desulfohalobium retbaense DSM 5692 8419715 YP_003198735.1 CDS dapF NC_013223.1 2145989 2146834 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 2145989..2146834 Desulfohalobium retbaense DSM 5692 8419716 YP_003198736.1 CDS Dret_1874 NC_013223.1 2147054 2147932 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2147054..2147932 Desulfohalobium retbaense DSM 5692 8419717 YP_003198737.1 CDS Dret_1875 NC_013223.1 2148640 2149182 R regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase complement(2148640..2149182) Desulfohalobium retbaense DSM 5692 8419718 YP_003198738.1 CDS Dret_1876 NC_013223.1 2150311 2151009 D TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; KEGG: dat:HRM2_40650 SfsA; sugar fermentation stimulation protein 2150311..2151009 Desulfohalobium retbaense DSM 5692 8419719 YP_003198739.1 CDS Dret_1877 NC_013223.1 2151124 2153637 D TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: dvm:DvMF_3170 heavy metal translocating P- type ATPase; heavy metal translocating P-type ATPase 2151124..2153637 Desulfohalobium retbaense DSM 5692 8419720 YP_003198740.1 CDS Dret_1878 NC_013223.1 2153735 2154040 D KEGG: dma:DMR_38440 hypothetical protein; Contains selenocysteine; hypothetical protein 2153735..2154040 Desulfohalobium retbaense DSM 5692 8419721 YP_003198741.1 CDS Dret_1879 NC_013223.1 2154685 2154999 D KEGG: dma:DMR_38440 hypothetical protein; hypothetical protein 2154685..2154999 Desulfohalobium retbaense DSM 5692 8419722 YP_003198742.1 CDS Dret_1880 NC_013223.1 2156067 2157236 D PFAM: filamentation induced by cAMP protein Fic; KEGG: dde:Dde_0970 fic family protein; filamentation induced by cAMP protein fic 2156067..2157236 Desulfohalobium retbaense DSM 5692 8419723 YP_003198743.1 CDS Dret_1881 NC_013223.1 2157941 2159623 D PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: dal:Dalk_4398 peptidoglycan-binding LysM; Peptidoglycan-binding lysin domain-containing protein 2157941..2159623 Desulfohalobium retbaense DSM 5692 8419724 YP_003198744.1 CDS Dret_1882 NC_013223.1 2160852 2162510 D KEGG: dde:Dde_0121 hypothetical protein; hypothetical protein 2160852..2162510 Desulfohalobium retbaense DSM 5692 8419725 YP_003198745.1 CDS Dret_1883 NC_013223.1 2162653 2164083 D KEGG: dde:Dde_1011 hypothetical protein; hypothetical protein 2162653..2164083 Desulfohalobium retbaense DSM 5692 8419726 YP_003198746.1 CDS Dret_1884 NC_013223.1 2164262 2165128 D KEGG: bgl:bglu_1g23150 auxin-binding protein; hypothetical protein 2164262..2165128 Desulfohalobium retbaense DSM 5692 8419727 YP_003198747.1 CDS Dret_1885 NC_013223.1 2166314 2167564 D PFAM: Di-haem cytochrome c peroxidase; KEGG: mlo:mll1163 methylamine utilization protein; Di-heme cytochrome c peroxidase 2166314..2167564 Desulfohalobium retbaense DSM 5692 8419728 YP_003198748.1 CDS Dret_1886 NC_013223.1 2168406 2169428 R KEGG: dma:DMR_34450 hypothetical protein; hypothetical protein complement(2168406..2169428) Desulfohalobium retbaense DSM 5692 8419729 YP_003198749.1 CDS Dret_1887 NC_013223.1 2170327 2171433 D PFAM: Polynucleotide adenylyltransferase region; KEGG: dma:DMR_28110 putative tRNA nucleotidyltransferase; tRNA adenylyltransferase 2170327..2171433 Desulfohalobium retbaense DSM 5692 8419730 YP_003198750.1 CDS Dret_1888 NC_013223.1 2171772 2172287 D KEGG: dal:Dalk_2791 hypothetical protein; hypothetical protein 2171772..2172287 Desulfohalobium retbaense DSM 5692 8419731 YP_003198751.1 CDS Dret_1889 NC_013223.1 2172452 2173126 D PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: dma:DMR_22330 hypothetical protein; nuclease (SNase domain-containing protein) 2172452..2173126 Desulfohalobium retbaense DSM 5692 8419732 YP_003198752.1 CDS Dret_1890 NC_013223.1 2173212 2173373 R hypothetical protein complement(2173212..2173373) Desulfohalobium retbaense DSM 5692 8419733 YP_003198753.1 CDS Dret_1891 NC_013223.1 2173630 2173983 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sat:SYN_01508 transcriptional regulator helix turn helix; XRE family transcriptional regulator complement(2173630..2173983) Desulfohalobium retbaense DSM 5692 8419734 YP_003198754.1 CDS Dret_1892 NC_013223.1 2173952 2174230 R KEGG: glo:Glov_1134 conserved hypothetical cytosolic protein; hypothetical protein complement(2173952..2174230) Desulfohalobium retbaense DSM 5692 8419735 YP_003198755.1 CDS Dret_1893 NC_013223.1 2174345 2174500 R hypothetical protein complement(2174345..2174500) Desulfohalobium retbaense DSM 5692 8419736 YP_003198756.1 CDS Dret_1894 NC_013223.1 2174960 2176723 R TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein; KEGG: dde:Dde_2052 sigma-70 factor; RpoD subfamily RNA polymerase sigma-70 subunit complement(2174960..2176723) Desulfohalobium retbaense DSM 5692 8419737 YP_003198757.1 CDS Dret_1895 NC_013223.1 2176716 2178437 R KEGG: dma:DMR_20690 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein; DNA primase complement(2176716..2178437) Desulfohalobium retbaense DSM 5692 8419738 YP_003198758.1 CDS Dret_1896 NC_013223.1 2178767 2178961 R hypothetical protein complement(2178767..2178961) Desulfohalobium retbaense DSM 5692 8419739 YP_003198759.1 CDS Dret_1897 NC_013223.1 2178954 2181257 R KEGG: dvu:DVU1790 MutS2 family protein; TIGRFAM: MutS2 family protein; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; MutS III domain protein; MutS2 family protein complement(2178954..2181257) Desulfohalobium retbaense DSM 5692 8419740 YP_003198760.1 CDS rpsU NC_013223.1 2181840 2182040 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(2181840..2182040) Desulfohalobium retbaense DSM 5692 8419741 YP_003198761.1 CDS Dret_1899 NC_013223.1 2182190 2182363 R KEGG: dvl:Dvul_1365 hypothetical protein; hypothetical protein complement(2182190..2182363) Desulfohalobium retbaense DSM 5692 8419742 YP_003198762.1 CDS Dret_1900 NC_013223.1 2182379 2182651 R PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: dma:DMR_20640 HU_IHF family transcriptional regulator; histone family protein DNA-binding protein complement(2182379..2182651) Desulfohalobium retbaense DSM 5692 8419743 YP_003198763.1 CDS Dret_1901 NC_013223.1 2183400 2184218 R KEGG: dvm:DvMF_0501 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase; dimethyladenosine transferase complement(2183400..2184218) Desulfohalobium retbaense DSM 5692 8419744 YP_003198764.1 CDS Dret_1902 NC_013223.1 2184215 2185702 R PFAM: glycosyl transferase family 20; KEGG: sat:SYN_02628 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Alpha,alpha-trehalose-phosphate synthase (UDP- forming) complement(2184215..2185702) Desulfohalobium retbaense DSM 5692 8419745 YP_003198765.1 CDS Dret_1903 NC_013223.1 2185808 2186641 R TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; KEGG: dde:Dde_2061 trehalose-phosphatase; trehalose-phosphatase complement(2185808..2186641) Desulfohalobium retbaense DSM 5692 8419746 YP_003198766.1 CDS Dret_1904 NC_013223.1 2187066 2189114 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(2187066..2189114) Desulfohalobium retbaense DSM 5692 8419747 YP_003198767.1 CDS Dret_1905 NC_013223.1 2189111 2189977 R KEGG: dde:Dde_2064 hypothetical protein; hypothetical protein complement(2189111..2189977) Desulfohalobium retbaense DSM 5692 8419748 YP_003198768.1 CDS Dret_1906 NC_013223.1 2190543 2191277 R TIGRFAM: outer membrane assembly lipoprotein YfiO; SMART: Tetratricopeptide repeat; KEGG: dde:Dde_2065 putative lipoprotein; outer membrane assembly lipoprotein YfiO complement(2190543..2191277) Desulfohalobium retbaense DSM 5692 8419749 YP_003198769.1 CDS Dret_1907 NC_013223.1 2191267 2192199 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvl:Dvul_1324 thioredoxin reductase; thioredoxin-disulfide reductase complement(2191267..2192199) Desulfohalobium retbaense DSM 5692 8419750 YP_003198770.1 CDS Dret_1908 NC_013223.1 2192202 2192522 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dma:DMR_21650 thioredoxin; thioredoxin complement(2192202..2192522) Desulfohalobium retbaense DSM 5692 8419751 YP_003198771.1 CDS Dret_1909 NC_013223.1 2192636 2193721 R KEGG: dvl:Dvul_1322 metalloendopeptidase glycoprotease family; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase complement(2192636..2193721) Desulfohalobium retbaense DSM 5692 8419752 YP_003198772.1 CDS Dret_1910 NC_013223.1 2193721 2194725 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(2193721..2194725) Desulfohalobium retbaense DSM 5692 8419753 YP_003198773.1 CDS Dret_1911 NC_013223.1 2194713 2195513 R KEGG: dma:DMR_21620 hypothetical protein; hypothetical protein complement(2194713..2195513) Desulfohalobium retbaense DSM 5692 8419754 YP_003198774.1 CDS Dret_1912 NC_013223.1 2195566 2196480 R KEGG: dvm:DvMF_0406 tetratricopeptide TPR_4; hypothetical protein complement(2195566..2196480) Desulfohalobium retbaense DSM 5692 8419755 YP_003198775.1 CDS Dret_1913 NC_013223.1 2196470 2196778 R PFAM: Septum formation initiator; KEGG: dds:Ddes_1194 septum formation initiator; septum formation initiator complement(2196470..2196778) Desulfohalobium retbaense DSM 5692 8419756 YP_003198776.1 CDS Dret_1914 NC_013223.1 2197064 2197321 R KEGG: dde:Dde_2073 hypothetical protein; hypothetical protein complement(2197064..2197321) Desulfohalobium retbaense DSM 5692 8419757 YP_003198777.1 CDS Dret_1915 NC_013223.1 2197318 2197965 R KEGG: dat:HRM2_05010 hypothetical protein; hypothetical protein complement(2197318..2197965) Desulfohalobium retbaense DSM 5692 8419758 YP_003198778.1 CDS Dret_1916 NC_013223.1 2198030 2199211 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: sat:SYN_00126 pili retraction protein; twitching motility protein complement(2198030..2199211) Desulfohalobium retbaense DSM 5692 8419759 YP_003198779.1 CDS Dret_1917 NC_013223.1 2199214 2200296 R KEGG: dal:Dalk_3302 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein complement(2199214..2200296) Desulfohalobium retbaense DSM 5692 8419760 YP_003198780.1 CDS Dret_1918 NC_013223.1 2200345 2200905 R TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dvl:Dvul_1316 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(2200345..2200905) Desulfohalobium retbaense DSM 5692 8419761 YP_003198781.1 CDS Dret_1919 NC_013223.1 2200886 2201485 R PFAM: Lytic transglycosylase catalytic; KEGG: dvm:DvMF_1036 lytic transglycosylase catalytic; Lytic transglycosylase catalytic complement(2200886..2201485) Desulfohalobium retbaense DSM 5692 8419762 YP_003198782.1 CDS Dret_1920 NC_013223.1 2201601 2202491 R PFAM: ATPase-like, ParA/MinD; KEGG: dvl:Dvul_1315 hypothetical protein; ParA/MinD-like ATPase complement(2201601..2202491) Desulfohalobium retbaense DSM 5692 8419763 YP_003198783.1 CDS Dret_1921 NC_013223.1 2202484 2203389 R PFAM: protein of unknown function DUF368; KEGG: dol:Dole_2007 hypothetical protein; hypothetical protein complement(2202484..2203389) Desulfohalobium retbaense DSM 5692 8419764 YP_003198784.1 CDS Dret_1922 NC_013223.1 2203514 2204176 R KEGG: dvu:DVU1849 protein-L-isoaspartate O- methyltransferase; TIGRFAM: protein-L-isoaspartate O- methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase; protein-L-isoaspartate O-methyltransferase complement(2203514..2204176) Desulfohalobium retbaense DSM 5692 8419765 YP_003198785.1 CDS Dret_1923 NC_013223.1 2204371 2204835 D PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dde:Dde_2078 CBS; hypothetical protein 2204371..2204835 Desulfohalobium retbaense DSM 5692 8419766 YP_003198786.1 CDS Dret_1924 NC_013223.1 2204992 2205468 R TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dat:HRM2_11670 HyaD1; hydrogenase maturation protease complement(2204992..2205468) Desulfohalobium retbaense DSM 5692 8419767 YP_003198787.1 CDS Dret_1925 NC_013223.1 2205565 2205669 R hypothetical protein complement(2205565..2205669) Desulfohalobium retbaense DSM 5692 8419768 YP_003198788.1 CDS Dret_1926 NC_013223.1 2205834 2207243 D KEGG: psb:Psyr_4480 TonB, C-terminal; hypothetical protein 2205834..2207243 Desulfohalobium retbaense DSM 5692 8419769 YP_003198789.1 CDS Dret_1927 NC_013223.1 2207538 2208962 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ade:Adeh_3385 ABC transporter, ATPase subunit; ABC transporter complement(2207538..2208962) Desulfohalobium retbaense DSM 5692 8419771 YP_003198790.1 CDS Dret_1928 NC_013223.1 2209545 2210717 D PFAM: aminotransferase class I and II; KEGG: dde:Dde_2730 aminotransferase; class I and II aminotransferase 2209545..2210717 Desulfohalobium retbaense DSM 5692 8419773 YP_003198791.1 CDS Dret_1929 NC_013223.1 2210718 2212010 D PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; oxidoreductase domain protein; KEGG: dde:Dde_2731 homoserine dehydrogenase; Homoserine dehydrogenase 2210718..2212010 Desulfohalobium retbaense DSM 5692 8419774 YP_003198792.1 CDS Dret_1930 NC_013223.1 2212082 2213278 D KEGG: dma:DMR_28980 2,3-bisphosphoglycerate- independent phosphoglycerate mutase; TIGRFAM: phosphonopyruvate decarboxylase-related protein; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; metalloenzyme domain protein; phosphonopyruvate decarboxylase-like protein 2212082..2213278 Desulfohalobium retbaense DSM 5692 8419775 YP_003198793.1 CDS Dret_1931 NC_013223.1 2213275 2213706 D PFAM: thioesterase superfamily protein; KEGG: dde:Dde_2735 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 2213275..2213706 Desulfohalobium retbaense DSM 5692 8419776 YP_003198794.1 CDS Dret_1932 NC_013223.1 2213703 2214545 D PFAM: amidohydrolase 2; TatD-related deoxyribonuclease; KEGG: dma:DMR_28960 amidohydrolase 2 family protein; amidohydrolase 2 2213703..2214545 Desulfohalobium retbaense DSM 5692 8419777 YP_003198795.1 CDS Dret_1933 NC_013223.1 2214542 2215057 D KEGG: dds:Ddes_1271 hypothetical protein; hypothetical protein 2214542..2215057 Desulfohalobium retbaense DSM 5692 8419778 YP_003198796.1 CDS Dret_1934 NC_013223.1 2215825 2216709 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: dat:HRM2_44930 YwkC; 6-phosphogluconate dehydrogenase complement(2215825..2216709) Desulfohalobium retbaense DSM 5692 8419779 YP_003198797.1 CDS Dret_1935 NC_013223.1 2216869 2217996 R PFAM: Radical SAM domain protein; KEGG: dma:DMR_45420 hypothetical protein; radical SAM protein complement(2216869..2217996) Desulfohalobium retbaense DSM 5692 8419780 YP_003198798.1 CDS Dret_1936 NC_013223.1 2217993 2219000 R KEGG: dma:DMR_45410 hypothetical protein; hypothetical protein complement(2217993..2219000) Desulfohalobium retbaense DSM 5692 8419781 YP_003198799.1 CDS Dret_1937 NC_013223.1 2219266 2221323 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2219266..2221323 Desulfohalobium retbaense DSM 5692 8419782 YP_003198800.1 CDS Dret_1938 NC_013223.1 2221721 2222464 D KEGG: dma:DMR_37970 acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 2221721..2222464 Desulfohalobium retbaense DSM 5692 8419783 YP_003198801.1 CDS Dret_1939 NC_013223.1 2222434 2224101 D PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: dma:DMR_37960 hypothetical protein; beta-lactamase domain-containing protein 2222434..2224101 Desulfohalobium retbaense DSM 5692 8419784 YP_003198802.1 CDS Dret_1940 NC_013223.1 2224319 2225068 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: dde:Dde_1138 5-oxopent-3-ene-1,2,5- tricarboxylate decarboxylase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 2224319..2225068 Desulfohalobium retbaense DSM 5692 8419785 YP_003198803.1 CDS Dret_1941 NC_013223.1 2225261 2226049 D TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: dvl:Dvul_2108 30S ribosomal protein S2; 30S ribosomal protein S2 2225261..2226049 Desulfohalobium retbaense DSM 5692 8419786 YP_003198804.1 CDS Dret_1942 NC_013223.1 2226051 2226911 D TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; KEGG: dvl:Dvul_2109 elongation factor Ts; translation elongation factor Ts 2226051..2226911 Desulfohalobium retbaense DSM 5692 8419787 YP_003198805.1 CDS Dret_1943 NC_013223.1 2226959 2227678 D KEGG: dvl:Dvul_2111 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; uridylate kinase 2226959..2227678 Desulfohalobium retbaense DSM 5692 8419788 YP_003198806.1 CDS Dret_1944 NC_013223.1 2227683 2228237 D TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: dde:Dde_1128 ribosome recycling factor; ribosome recycling factor 2227683..2228237 Desulfohalobium retbaense DSM 5692 8419789 YP_003198807.1 CDS Dret_1945 NC_013223.1 2228441 2229136 D KEGG: dvu:DVU0869 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; UDP diphosphate synthase 2228441..2229136 Desulfohalobium retbaense DSM 5692 8419790 YP_003198808.1 CDS Dret_1946 NC_013223.1 2229144 2229944 D PFAM: phosphatidate cytidylyltransferase; KEGG: dvl:Dvul_2114 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 2229144..2229944 Desulfohalobium retbaense DSM 5692 8419791 YP_003198809.1 CDS Dret_1947 NC_013223.1 2229941 2231170 D KEGG: dde:Dde_1123 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2229941..2231170 Desulfohalobium retbaense DSM 5692 8419792 YP_003198810.1 CDS Dret_1948 NC_013223.1 2231180 2232250 D KEGG: dde:Dde_1122 peptidase RseP; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc metalloprotease 2231180..2232250 Desulfohalobium retbaense DSM 5692 8419793 YP_003198811.1 CDS Dret_1949 NC_013223.1 2232222 2232983 D PFAM: peptidase M22 glycoprotease; KEGG: dvu:DVU0864 glycoprotease family protein, putative; peptidase M22 glycoprotease 2232222..2232983 Desulfohalobium retbaense DSM 5692 8419794 YP_003198812.1 CDS Dret_1950 NC_013223.1 2233145 2233651 D PFAM: iron dependent repressor; regulatory protein MarR; SMART: iron dependent repressor; KEGG: sfu:Sfum_3768 iron (metal) dependent repressor, DtxR family; DtxR family iron (metal) dependent repressor 2233145..2233651 Desulfohalobium retbaense DSM 5692 8419795 YP_003198813.1 CDS Dret_1951 NC_013223.1 2233732 2234697 D TIGRFAM: MJ0042 family finger-like protein; PFAM: Protein of unknown function DUF2143; KEGG: dvu:DVU0859 hypothetical protein; hypothetical protein 2233732..2234697 Desulfohalobium retbaense DSM 5692 8419796 YP_003198814.1 CDS Dret_1952 NC_013223.1 2234708 2235046 D KEGG: dvm:DvMF_2907 hypothetical protein; hypothetical protein 2234708..2235046 Desulfohalobium retbaense DSM 5692 8419797 YP_003198815.1 CDS Dret_1953 NC_013223.1 2235648 2236832 D PFAM: Radical SAM domain protein; KEGG: dvl:Dvul_2126 radical SAM domain-containing protein; radical SAM protein 2235648..2236832 Desulfohalobium retbaense DSM 5692 8419798 YP_003198816.1 CDS Dret_1954 NC_013223.1 2236942 2237919 D PFAM: delta-aminolevulinic acid dehydratase; KEGG: dma:DMR_04460 delta-aminolevulinic acid dehydratase; porphobilinogen synthase 2236942..2237919 Desulfohalobium retbaense DSM 5692 8419799 YP_003198817.1 CDS Dret_1955 NC_013223.1 2238023 2239114 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dma:DMR_04480 hypothetical protein; radical SAM protein 2238023..2239114 Desulfohalobium retbaense DSM 5692 8419800 YP_003198818.1 CDS Dret_1956 NC_013223.1 2239198 2239695 D SMART: Transcription regulator, AsnC-type; KEGG: dde:Dde_2578 AsnC family transcriptional regulator; putative transcriptional regulator, AsnC family 2239198..2239695 Desulfohalobium retbaense DSM 5692 8419801 YP_003198819.1 CDS Dret_1957 NC_013223.1 2239692 2240369 D KEGG: dma:DMR_38890 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 2239692..2240369 Desulfohalobium retbaense DSM 5692 8419802 YP_003198820.1 CDS Dret_1958 NC_013223.1 2240728 2241195 D PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type; KEGG: dma:DMR_43700 AsnC family transcriptional regulator; transcriptional regulator, AsnC family 2240728..2241195 Desulfohalobium retbaense DSM 5692 8419803 YP_003198821.1 CDS Dret_1959 NC_013223.1 2241236 2244241 D TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: dvl:Dvul_0070 putative delta-1-pyrroline-5- carboxylate dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase 2241236..2244241 Desulfohalobium retbaense DSM 5692 8419804 YP_003198822.1 CDS Dret_1960 NC_013223.1 2244324 2244437 D hypothetical protein 2244324..2244437 Desulfohalobium retbaense DSM 5692 8419805 YP_003198823.1 CDS Dret_1961 NC_013223.1 2244434 2245882 D TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pla:Plav_3085 sodium/proline symporter; sodium/proline symporter 2244434..2245882 Desulfohalobium retbaense DSM 5692 8419806 YP_003198824.1 CDS Dret_1962 NC_013223.1 2246298 2246966 R KEGG: dma:DMR_05440 hypothetical protein; hypothetical protein complement(2246298..2246966) Desulfohalobium retbaense DSM 5692 8419807 YP_003198825.1 CDS Dret_1963 NC_013223.1 2246979 2248202 R KEGG: dma:DMR_05430 quinone-interacting membrane- bound oxidoreductase complex subunit C; quinone-interacting membrane-bound oxidoreductase complex subunit C complement(2246979..2248202) Desulfohalobium retbaense DSM 5692 8419808 YP_003198826.1 CDS Dret_1964 NC_013223.1 2248215 2250515 R PFAM: methyl-viologen-reducing hydrogenase delta subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: dvu:DVU0849 heterodisulfide reductase, iron- sulfur-binding subunit, putative; methyl-viologen-reducing hydrogenase delta subunit complement(2248215..2250515) Desulfohalobium retbaense DSM 5692 8419809 YP_003198827.1 CDS Dret_1965 NC_013223.1 2250520 2251755 R KEGG: dma:DMR_05410 quinone-interacting membrane- bound oxidoreductase complex subunit A; quinone-interacting membrane-bound oxidoreductase complex subunit A complement(2250520..2251755) Desulfohalobium retbaense DSM 5692 8419810 YP_003198828.1 CDS Dret_1966 NC_013223.1 2252103 2254106 R catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; adenylylsulfate reductase subunit alpha complement(2252103..2254106) Desulfohalobium retbaense DSM 5692 8419811 YP_003198829.1 CDS Dret_1967 NC_013223.1 2254155 2254658 R TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2137 adenylylsulfate reductase, beta subunit; adenylylsulfate reductase subunit beta complement(2254155..2254658) Desulfohalobium retbaense DSM 5692 8419812 YP_003198830.1 CDS Dret_1968 NC_013223.1 2254963 2256267 R KEGG: dma:DMR_39470 putative sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase; sulfate adenylyltransferase complement(2254963..2256267) Desulfohalobium retbaense DSM 5692 8419813 YP_003198831.1 CDS Dret_1969 NC_013223.1 2256720 2258168 R TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: dal:Dalk_0381 potassium uptake protein, TrkH family; TrkH family potassium uptake protein complement(2256720..2258168) Desulfohalobium retbaense DSM 5692 8419814 YP_003198832.1 CDS trkA NC_013223.1 2258171 2259532 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(2258171..2259532) Desulfohalobium retbaense DSM 5692 8419815 YP_003198833.1 CDS Dret_1971 NC_013223.1 2260028 2260792 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dvm:DvMF_2816 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2260028..2260792 Desulfohalobium retbaense DSM 5692 8419816 YP_003198834.1 CDS Dret_1972 NC_013223.1 2261046 2261396 D KEGG: sfu:Sfum_0244 hypothetical protein; hypothetical protein 2261046..2261396 Desulfohalobium retbaense DSM 5692 8419817 YP_003198835.1 CDS Dret_1973 NC_013223.1 2261405 2263048 D PFAM: ABC-1 domain protein; KEGG: pca:Pcar_2342 ubiquinone biosynthesis protein AarF, putative; ABC transporter 2261405..2263048 Desulfohalobium retbaense DSM 5692 8419818 YP_003198836.1 CDS Dret_1974 NC_013223.1 2263071 2263625 D TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_1591 hypothetical protein; metal dependent phosphohydrolase 2263071..2263625 Desulfohalobium retbaense DSM 5692 8419819 YP_003198837.1 CDS Dret_1975 NC_013223.1 2263632 2267030 R PFAM: UvrD/REP helicase; KEGG: noc:Noc_0988 UvrD/REP helicase; UvrD/REP helicase complement(2263632..2267030) Desulfohalobium retbaense DSM 5692 8419820 YP_003198838.1 CDS Dret_1976 NC_013223.1 2267030 2267434 R PFAM: VanZ family protein; KEGG: reh:H16_A1479 hypothetical protein; VanZ family protein complement(2267030..2267434) Desulfohalobium retbaense DSM 5692 8419821 YP_003198839.1 CDS Dret_1977 NC_013223.1 2267487 2270228 R TIGRFAM: probable DNA repair protein; KEGG: noc:Noc_0987 hypothetical protein; putative DNA repair protein complement(2267487..2270228) Desulfohalobium retbaense DSM 5692 8419822 YP_003198840.1 CDS Dret_1978 NC_013223.1 2270304 2271524 R TIGRFAM: glycogen synthase; PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_3629 glycosyl transferase, group 1; glycogen synthase complement(2270304..2271524) Desulfohalobium retbaense DSM 5692 8419823 YP_003198841.1 CDS Dret_1979 NC_013223.1 2271877 2273157 R PFAM: protein of unknown function DUF401; KEGG: dde:Dde_2515 hypothetical protein; hypothetical protein complement(2271877..2273157) Desulfohalobium retbaense DSM 5692 8419824 YP_003198842.1 CDS Dret_1980 NC_013223.1 2273412 2274041 D PFAM: NUDIX hydrolase; KEGG: ecq:ECED1_1012 putative NUDIX hydrolase; NUDIX hydrolase 2273412..2274041 Desulfohalobium retbaense DSM 5692 8419825 YP_003198843.1 CDS Dret_1981 NC_013223.1 2274357 2275508 D KEGG: dma:DMR_33400 hypothetical protein; hypothetical protein 2274357..2275508 Desulfohalobium retbaense DSM 5692 8419826 YP_003198844.1 CDS Dret_1982 NC_013223.1 2275588 2275857 D KEGG: tcx:Tcr_1766 hypothetical protein; hypothetical protein 2275588..2275857 Desulfohalobium retbaense DSM 5692 8419827 YP_003198845.1 CDS Dret_1983 NC_013223.1 2275982 2277628 D PFAM: PhoU family protein; aminoglycoside phosphotransferase; KEGG: dma:DMR_18080 hypothetical protein; phosphate uptake regulator PhoU 2275982..2277628 Desulfohalobium retbaense DSM 5692 8419828 YP_003198846.1 CDS Dret_1984 NC_013223.1 2277796 2278674 D PFAM: RimK domain protein ATP-grasp; KEGG: dma:DMR_18070 hypothetical protein; RimK domain-containing protein ATP-grasp 2277796..2278674 Desulfohalobium retbaense DSM 5692 8419829 YP_003198847.1 CDS Dret_1985 NC_013223.1 2278772 2279899 D KEGG: dma:DMR_18060 hypothetical protein; HPr kinase 2278772..2279899 Desulfohalobium retbaense DSM 5692 8419830 YP_003198848.1 CDS Dret_1986 NC_013223.1 2279869 2281074 D PFAM: protein of unknown function UPF0052 and CofD; KEGG: dde:Dde_3600 hypothetical protein; hypothetical protein 2279869..2281074 Desulfohalobium retbaense DSM 5692 8419831 YP_003198849.1 CDS Dret_1987 NC_013223.1 2281270 2281635 D KEGG: dvm:DvMF_2199 hypothetical protein; hypothetical protein 2281270..2281635 Desulfohalobium retbaense DSM 5692 8419832 YP_003198850.1 CDS Dret_1988 NC_013223.1 2281817 2282560 R KEGG: dol:Dole_2867 hypothetical protein; hypothetical protein complement(2281817..2282560) Desulfohalobium retbaense DSM 5692 8419833 YP_003198851.1 CDS Dret_1989 NC_013223.1 2282805 2285267 R PFAM: glycosyl transferase group 1; KEGG: dde:Dde_3613 glycosyl transferase domain- containing protein; group 1 glycosyl transferase complement(2282805..2285267) Desulfohalobium retbaense DSM 5692 8419834 YP_003198852.1 CDS Dret_1990 NC_013223.1 2285460 2286704 R PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein; KEGG: dde:Dde_2343 diguanylate phosphodiesterase; diguanylate phosphodiesterase complement(2285460..2286704) Desulfohalobium retbaense DSM 5692 8419835 YP_003198853.1 CDS Dret_1991 NC_013223.1 2287245 2289110 D KEGG: dvm:DvMF_1024 hypothetical protein; Tfp pilus assembly protein ATPase PilM-like protein 2287245..2289110 Desulfohalobium retbaense DSM 5692 8419836 YP_003198854.1 CDS Dret_1992 NC_013223.1 2289112 2289690 D KEGG: dvl:Dvul_1789 hypothetical protein; hypothetical protein 2289112..2289690 Desulfohalobium retbaense DSM 5692 8419837 YP_003198855.1 CDS Dret_1993 NC_013223.1 2289730 2290215 D KEGG: dvl:Dvul_1790 hypothetical protein; hypothetical protein 2289730..2290215 Desulfohalobium retbaense DSM 5692 8419838 YP_003198856.1 CDS Dret_1994 NC_013223.1 2290231 2291730 D PFAM: type II and III secretion system protein; KEGG: dal:Dalk_4815 type II and III secretion system protein; type II and III secretion system protein 2290231..2291730 Desulfohalobium retbaense DSM 5692 8419839 YP_003198857.1 CDS Dret_1995 NC_013223.1 2291774 2293423 D PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: dal:Dalk_4816 type II secretory pathway component ExeA (predicted ATPase)-like protein; Peptidoglycan-binding lysin domain-containing protein 2291774..2293423 Desulfohalobium retbaense DSM 5692 8419840 YP_003198858.1 CDS Dret_1996 NC_013223.1 2293439 2295142 D PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: dvm:DvMF_1028 type II secretion system protein E; type II secretion system protein E 2293439..2295142 Desulfohalobium retbaense DSM 5692 8419841 YP_003198859.1 CDS Dret_1997 NC_013223.1 2295167 2296390 D PFAM: Type II secretion system F domain; KEGG: dvm:DvMF_1029 type II secretion system protein; type II secretion system F domain-containing protein 2295167..2296390 Desulfohalobium retbaense DSM 5692 8419842 YP_003198860.1 CDS Dret_1998 NC_013223.1 2296703 2297578 R KEGG: GM23831 gene product from transcript GM23831- RA; hypothetical protein complement(2296703..2297578) Desulfohalobium retbaense DSM 5692 8419843 YP_003198861.1 CDS Dret_1999 NC_013223.1 2297640 2298005 R KEGG: aha:AHA_0398 putative msha biogenesis protein msho; hypothetical protein complement(2297640..2298005) Desulfohalobium retbaense DSM 5692 8419844 YP_003198862.1 CDS Dret_2000 NC_013223.1 2298015 2298371 R hypothetical protein complement(2298015..2298371) Desulfohalobium retbaense DSM 5692 8419845 YP_003198863.1 CDS Dret_2001 NC_013223.1 2298386 2298889 R KEGG: hha:Hhal_0319 hypothetical protein; hypothetical protein complement(2298386..2298889) Desulfohalobium retbaense DSM 5692 8419846 YP_003198864.1 CDS Dret_2002 NC_013223.1 2299335 2300561 D PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 2299335..2300561 Desulfohalobium retbaense DSM 5692 8419847 YP_003198865.1 CDS Dret_2003 NC_013223.1 2301299 2301841 R KEGG: rfr:Rfer_3364 hypothetical protein; hypothetical protein complement(2301299..2301841) Desulfohalobium retbaense DSM 5692 8419848 YP_003198866.1 CDS Dret_2004 NC_013223.1 2302416 2303030 D KEGG: dvm:DvMF_0918 hypothetical protein; hypothetical protein 2302416..2303030 Desulfohalobium retbaense DSM 5692 8419849 YP_003198867.1 CDS Dret_2005 NC_013223.1 2303031 2303570 D KEGG: dde:Dde_2592 hypothetical protein; hypothetical protein 2303031..2303570 Desulfohalobium retbaense DSM 5692 8419850 YP_003198868.1 CDS Dret_2006 NC_013223.1 2303845 2304834 R KEGG: dvl:Dvul_2811 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase complement(2303845..2304834) Desulfohalobium retbaense DSM 5692 8419851 YP_003198869.1 CDS Dret_2007 NC_013223.1 2304961 2307105 R PFAM: UvrD/REP helicase; KEGG: dvu:DVU0156 ATP-dependent DNA helicase UvrD; UvrD/REP helicase complement(2304961..2307105) Desulfohalobium retbaense DSM 5692 8419852 YP_003198870.1 CDS Dret_2008 NC_013223.1 2307121 2307747 R KEGG: pla:Plav_0995 TonB family protein; hypothetical protein complement(2307121..2307747) Desulfohalobium retbaense DSM 5692 8419853 YP_003198871.1 CDS Dret_2009 NC_013223.1 2307722 2308342 R PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dvl:Dvul_0799 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(2307722..2308342) Desulfohalobium retbaense DSM 5692 8419854 YP_003198872.1 CDS argJ NC_013223.1 2308394 2309572 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase complement(2308394..2309572) Desulfohalobium retbaense DSM 5692 8419855 YP_003198873.1 CDS Dret_2011 NC_013223.1 2309679 2312189 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(2309679..2312189) Desulfohalobium retbaense DSM 5692 8419856 YP_003198874.1 CDS Dret_2012 NC_013223.1 2312200 2313354 R PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dde:Dde_1085 glycolate oxidase, iron-sulfur subunit, putative; hypothetical protein complement(2312200..2313354) Desulfohalobium retbaense DSM 5692 8419857 YP_003198875.1 CDS Dret_2013 NC_013223.1 2313354 2314748 R PFAM: FAD linked oxidase domain protein; KEGG: dvu:DVU0827 glycolate oxidase, subunit GlcD, putative; FAD linked oxidase domain-containing protein complement(2313354..2314748) Desulfohalobium retbaense DSM 5692 8419858 YP_003198876.1 CDS smpB NC_013223.1 2314763 2315218 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(2314763..2315218) Desulfohalobium retbaense DSM 5692 8419859 YP_003198877.1 CDS Dret_2015 NC_013223.1 2315311 2317110 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; KEGG: dma:DMR_07500 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase complement(2315311..2317110) Desulfohalobium retbaense DSM 5692 8419860 YP_003198878.1 CDS Dret_2016 NC_013223.1 2317111 2317446 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: dvl:Dvul_2151 phosphotransferase system, phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr complement(2317111..2317446) Desulfohalobium retbaense DSM 5692 8419861 YP_003198879.1 CDS Dret_2017 NC_013223.1 2317471 2318208 R PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: dvm:DvMF_2879 PTS system mannose/fructose/sorbose family IID component; PTS system mannose/fructose/sorbose family transporter subunit IID complement(2317471..2318208) Desulfohalobium retbaense DSM 5692 8419862 YP_003198880.1 CDS Dret_2018 NC_013223.1 2318217 2319056 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dvl:Dvul_2149 uroporphyrin-III C/tetrapyrrole methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase complement(2318217..2319056) Desulfohalobium retbaense DSM 5692 8419863 YP_003198881.1 CDS Dret_2019 NC_013223.1 2318998 2319402 R PFAM: protein of unknown function UPF0102; KEGG: dvl:Dvul_2148 hypothetical protein; hypothetical protein complement(2318998..2319402) Desulfohalobium retbaense DSM 5692 8419864 YP_003198882.1 CDS Dret_2020 NC_013223.1 2319384 2319977 R PFAM: ribonuclease HII/HIII; KEGG: dma:DMR_34650 ribonuclease HII; Ribonuclease H complement(2319384..2319977) Desulfohalobium retbaense DSM 5692 8419865 YP_003198883.1 CDS Dret_2021 NC_013223.1 2320156 2320512 R TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; KEGG: dvl:Dvul_2146 50S ribosomal protein L19; 50S ribosomal protein L19 complement(2320156..2320512) Desulfohalobium retbaense DSM 5692 8419866 YP_003198884.1 CDS Dret_2022 NC_013223.1 2320615 2321892 R KEGG: dde:Dde_1096 tRNA (guanine37-N1) methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: Protein of unknown function DUF2168; tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase complement(2320615..2321892) Desulfohalobium retbaense DSM 5692 8419867 YP_003198885.1 CDS Dret_2023 NC_013223.1 2321915 2322463 R TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: dvl:Dvul_2144 16S rRNA processing protein RimM; 16S rRNA processing protein RimM complement(2321915..2322463) Desulfohalobium retbaense DSM 5692 8419868 YP_003198886.1 CDS Dret_2024 NC_013223.1 2322478 2322711 R KEGG: dma:DMR_34690 hypothetical protein; hypothetical protein complement(2322478..2322711) Desulfohalobium retbaense DSM 5692 8419869 YP_003198887.1 CDS Dret_2025 NC_013223.1 2322839 2323084 R TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: dma:DMR_34700 30S ribosomal protein S16; 30S ribosomal protein S16 complement(2322839..2323084) Desulfohalobium retbaense DSM 5692 8419870 YP_003198888.1 CDS Dret_2026 NC_013223.1 2323292 2324773 R KEGG: dma:DMR_34710 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein complement(2323292..2324773) Desulfohalobium retbaense DSM 5692 8419871 YP_003198889.1 CDS Dret_2027 NC_013223.1 2324906 2326096 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(2324906..2326096) Desulfohalobium retbaense DSM 5692 8419872 YP_003198890.1 CDS Dret_2028 NC_013223.1 2326508 2327236 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2763 ATPase; ABC transporter 2326508..2327236 Desulfohalobium retbaense DSM 5692 8419873 YP_003198891.1 CDS Dret_2029 NC_013223.1 2327433 2328260 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: dde:Dde_2764 extracellular solute-binding protein; family 3 extracellular solute-binding protein 2327433..2328260 Desulfohalobium retbaense DSM 5692 8419874 YP_003198892.1 CDS Dret_2030 NC_013223.1 2328546 2330342 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvu:DVU0751 His/Glu/Gln/Arg/opine ABC transporter permease; polar amino acid ABC transporter inner membrane subunit 2328546..2330342 Desulfohalobium retbaense DSM 5692 8419875 YP_003198893.1 CDS Dret_2031 NC_013223.1 2330350 2331108 D PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: dde:Dde_1404 NCAIR mutase (PurE)-related proteins-like; 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase 2330350..2331108 Desulfohalobium retbaense DSM 5692 8419876 YP_003198894.1 CDS Dret_2032 NC_013223.1 2331312 2332379 D PFAM: glycosyl transferase group 1; KEGG: dvu:DVU1061 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 2331312..2332379 Desulfohalobium retbaense DSM 5692 8419877 YP_003198895.1 CDS Dret_2033 NC_013223.1 2332848 2333129 R TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: cjr:CJE0010 competence protein ComEA; competence protein ComEA complement(2332848..2333129) Desulfohalobium retbaense DSM 5692 8419878 YP_003198896.1 CDS Dret_2034 NC_013223.1 2333408 2335123 R in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from Escherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase complement(2333408..2335123) Desulfohalobium retbaense DSM 5692 8419879 YP_003198897.1 CDS Dret_2035 NC_013223.1 2335496 2337040 R PFAM: ferredoxin; KEGG: dma:DMR_17970 hypothetical protein; ferredoxin complement(2335496..2337040) Desulfohalobium retbaense DSM 5692 8419880 YP_003198898.1 CDS Dret_2036 NC_013223.1 2337049 2338005 R TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dma:DMR_20900 selenide, water dikinase; selenide, water dikinase complement(2337049..2338005) Desulfohalobium retbaense DSM 5692 8419881 YP_003198899.1 CDS Dret_2037 NC_013223.1 2338082 2338996 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dma:DMR_12480 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2338082..2338996) Desulfohalobium retbaense DSM 5692 8419882 YP_003198900.1 CDS Dret_2038 NC_013223.1 2339318 2339716 R TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: dvl:Dvul_1738 50S ribosomal protein L17; 50S ribosomal protein L17 complement(2339318..2339716) Desulfohalobium retbaense DSM 5692 8419883 YP_003198901.1 CDS Dret_2039 NC_013223.1 2339706 2340749 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(2339706..2340749) Desulfohalobium retbaense DSM 5692 8419884 YP_003198902.1 CDS Dret_2040 NC_013223.1 2340761 2341387 R KEGG: dds:Ddes_0685 ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; 30S ribosomal protein S4 complement(2340761..2341387) Desulfohalobium retbaense DSM 5692 8419885 YP_003198903.1 CDS Dret_2041 NC_013223.1 2341415 2341810 R TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11; KEGG: dvl:Dvul_1741 30S ribosomal protein S11; 30S ribosomal protein S11 complement(2341415..2341810) Desulfohalobium retbaense DSM 5692 8419886 YP_003198904.1 CDS rpsM NC_013223.1 2341835 2342206 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(2341835..2342206) Desulfohalobium retbaense DSM 5692 8419887 YP_003198905.1 CDS Dret_2043 NC_013223.1 2342223 2342336 R TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: dvl:Dvul_1743 50S ribosomal protein L36; 50S ribosomal protein L36 complement(2342223..2342336) Desulfohalobium retbaense DSM 5692 8419888 YP_003198906.1 CDS Dret_2044 NC_013223.1 2342365 2343129 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dde:Dde_2236 methionine aminopeptidase, type I; methionine aminopeptidase complement(2342365..2343129) Desulfohalobium retbaense DSM 5692 8419889 YP_003198907.1 CDS Dret_2045 NC_013223.1 2343132 2344439 R TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: dde:Dde_2237 preprotein translocase subunit SecY; preprotein translocase subunit SecY complement(2343132..2344439) Desulfohalobium retbaense DSM 5692 8419890 YP_003198908.1 CDS rplO NC_013223.1 2344444 2344890 R late assembly protein; 50S ribosomal protein L15 complement(2344444..2344890) Desulfohalobium retbaense DSM 5692 8419891 YP_003198909.1 CDS Dret_2047 NC_013223.1 2344877 2345059 R TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: dde:Dde_2239 50S ribosomal protein L30; 50S ribosomal protein L30 complement(2344877..2345059) Desulfohalobium retbaense DSM 5692 8419892 YP_003198910.1 CDS rpsE NC_013223.1 2345069 2345560 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(2345069..2345560) Desulfohalobium retbaense DSM 5692 8419893 YP_003198911.1 CDS Dret_2049 NC_013223.1 2345574 2345924 R TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: dma:DMR_12360 50S ribosomal protein L18; 50S ribosomal protein L18 complement(2345574..2345924) Desulfohalobium retbaense DSM 5692 8419894 YP_003198912.1 CDS Dret_2050 NC_013223.1 2345934 2346470 R TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; KEGG: dvm:DvMF_0094 50S ribosomal protein L6; 50S ribosomal protein L6 complement(2345934..2346470) Desulfohalobium retbaense DSM 5692 8419895 YP_003198913.1 CDS rpsH NC_013223.1 2346484 2346867 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(2346484..2346867) Desulfohalobium retbaense DSM 5692 8419896 YP_003198914.1 CDS Dret_2052 NC_013223.1 2346881 2347066 R PFAM: ribosomal protein S14; KEGG: dma:DMR_12330 30S ribosomal protein S14; 30S ribosomal protein S14 complement(2346881..2347066) Desulfohalobium retbaense DSM 5692 8419897 YP_003198915.1 CDS rplE NC_013223.1 2347077 2347616 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(2347077..2347616) Desulfohalobium retbaense DSM 5692 8419898 YP_003198916.1 CDS rplX NC_013223.1 2347626 2347949 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(2347626..2347949) Desulfohalobium retbaense DSM 5692 8419899 YP_003198917.1 CDS Dret_2055 NC_013223.1 2347961 2348329 R TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: dde:Dde_2247 50S ribosomal protein L14; 50S ribosomal protein L14 complement(2347961..2348329) Desulfohalobium retbaense DSM 5692 8419900 YP_003198918.1 CDS rpsQ NC_013223.1 2348339 2348605 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(2348339..2348605) Desulfohalobium retbaense DSM 5692 8419901 YP_003198919.1 CDS Dret_2057 NC_013223.1 2348598 2348801 R TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: dvl:Dvul_1757 50S ribosomal protein L29; 50S ribosomal protein L29 complement(2348598..2348801) Desulfohalobium retbaense DSM 5692 8419902 YP_003198920.1 CDS Dret_2058 NC_013223.1 2348804 2349217 R TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; KEGG: lip:LI0967 50S ribosomal protein L16; 50S ribosomal protein L16 complement(2348804..2349217) Desulfohalobium retbaense DSM 5692 8419903 YP_003198921.1 CDS rpsC NC_013223.1 2349217 2349858 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(2349217..2349858) Desulfohalobium retbaense DSM 5692 8419904 YP_003198922.1 CDS Dret_2060 NC_013223.1 2349871 2350203 R TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: dde:Dde_2252 50S ribosomal protein L22; 50S ribosomal protein L22 complement(2349871..2350203) Desulfohalobium retbaense DSM 5692 8419905 YP_003198923.1 CDS Dret_2061 NC_013223.1 2350218 2350490 R TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: dde:Dde_2253 SSU ribosomal protein S19P; 30S ribosomal protein S19 complement(2350218..2350490) Desulfohalobium retbaense DSM 5692 8419906 YP_003198924.1 CDS rplB NC_013223.1 2350499 2351326 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(2350499..2351326) Desulfohalobium retbaense DSM 5692 8419907 YP_003198925.1 CDS rplW NC_013223.1 2351329 2351619 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(2351329..2351619) Desulfohalobium retbaense DSM 5692 8419908 YP_003198926.1 CDS rplD NC_013223.1 2351622 2352242 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(2351622..2352242) Desulfohalobium retbaense DSM 5692 8419909 YP_003198927.1 CDS Dret_2065 NC_013223.1 2352254 2352883 R TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3; KEGG: dvm:DvMF_0079 50S ribosomal protein L3; 50S ribosomal protein L3 complement(2352254..2352883) Desulfohalobium retbaense DSM 5692 8419910 YP_003198928.1 CDS rpsJ NC_013223.1 2352895 2353212 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(2352895..2353212) Desulfohalobium retbaense DSM 5692 8419911 YP_003198929.1 CDS Dret_2067 NC_013223.1 2353218 2354414 R TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: dvl:Dvul_0447 elongation factor Tu; translation elongation factor Tu complement(2353218..2354414) Desulfohalobium retbaense DSM 5692 8419912 YP_003198930.1 CDS Dret_2068 NC_013223.1 2354425 2356494 R TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: dma:DMR_12170 elongation factor G; translation elongation factor G complement(2354425..2356494) Desulfohalobium retbaense DSM 5692 8419913 YP_003198931.1 CDS Dret_2069 NC_013223.1 2356507 2356977 R TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: dvm:DvMF_0076 30S ribosomal protein S7; 30S ribosomal protein S7 complement(2356507..2356977) Desulfohalobium retbaense DSM 5692 8419914 YP_003198932.1 CDS Dret_2070 NC_013223.1 2356990 2357361 R TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: dvl:Dvul_1770 30S ribosomal protein S12; 30S ribosomal protein S12 complement(2356990..2357361) Desulfohalobium retbaense DSM 5692 8419915 YP_003198933.1 CDS Dret_2071 NC_013223.1 2357452 2361609 R KEGG: dde:Dde_2998 DNA-directed RNA polymerase, acetylornithine deacetylase; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' complement(2357452..2361609) Desulfohalobium retbaense DSM 5692 8419916 YP_003198934.1 CDS rpoB NC_013223.1 2361673 2365764 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(2361673..2365764) Desulfohalobium retbaense DSM 5692 8419917 YP_003198935.1 CDS Dret_2073 NC_013223.1 2365999 2366385 R TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: dma:DMR_31170 50S ribosomal protein L7/L12; 50S ribosomal protein L7/L12 complement(2365999..2366385) Desulfohalobium retbaense DSM 5692 8419918 YP_003198936.1 CDS rplJ NC_013223.1 2366415 2366933 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(2366415..2366933) Desulfohalobium retbaense DSM 5692 8419919 YP_003198937.1 CDS Dret_2075 NC_013223.1 2367080 2367784 R TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; KEGG: dvl:Dvul_0442 50S ribosomal protein L1; 50S ribosomal protein L1 complement(2367080..2367784) Desulfohalobium retbaense DSM 5692 8419920 YP_003198938.1 CDS Dret_2076 NC_013223.1 2367802 2368227 R KEGG: dvm:DvMF_1451 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11; 50S ribosomal protein L11 complement(2367802..2368227) Desulfohalobium retbaense DSM 5692 8419921 YP_003198939.1 CDS Dret_2077 NC_013223.1 2368294 2368833 R KEGG: dvm:DvMF_1450 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein; KOW domain protein; NusG antitermination factor complement(2368294..2368833) Desulfohalobium retbaense DSM 5692 8419922 YP_003198940.1 CDS Dret_2078 NC_013223.1 2368848 2369096 R TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: dde:Dde_2990 preprotein translocase subunit SecE; Preprotein translocase subunit SecE complement(2368848..2369096) Desulfohalobium retbaense DSM 5692 8419923 YP_003198941.1 CDS rpmG NC_013223.1 2369204 2369353 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(2369204..2369353) Desulfohalobium retbaense DSM 5692 8419925 YP_003198942.1 CDS Dret_2080 NC_013223.1 2369357 2370553 R TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: dvl:Dvul_0447 elongation factor Tu; translation elongation factor Tu complement(2369357..2370553) Desulfohalobium retbaense DSM 5692 8419926 YP_003198943.1 CDS lpxC NC_013223.1 2371357 2372277 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(2371357..2372277) Desulfohalobium retbaense DSM 5692 8419931 YP_003198944.1 CDS Dret_2082 NC_013223.1 2372396 2373298 R KEGG: dma:DMR_31270 protein methyltransferase HemK; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small; protein-(glutamine-N5) methyltransferase complement(2372396..2373298) Desulfohalobium retbaense DSM 5692 8419932 YP_003198945.1 CDS Dret_2083 NC_013223.1 2373307 2374377 R TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: dma:DMR_31280 peptide chain release factor 1; peptide chain release factor 1 complement(2373307..2374377) Desulfohalobium retbaense DSM 5692 8419933 YP_003198946.1 CDS Dret_2084 NC_013223.1 2374470 2374694 R TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: dvm:DvMF_1442 50S ribosomal protein L31; 50S ribosomal protein L31 complement(2374470..2374694) Desulfohalobium retbaense DSM 5692 8419934 YP_003198947.1 CDS Dret_2085 NC_013223.1 2374873 2375526 R modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex complement(2374873..2375526) Desulfohalobium retbaense DSM 5692 8419935 YP_003198948.1 CDS Dret_2086 NC_013223.1 2375606 2375926 R TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: dvl:Dvul_2067 ATP synthase F0, C subunit; ATP synthase F0 subunit C complement(2375606..2375926) Desulfohalobium retbaense DSM 5692 8419936 YP_003198949.1 CDS Dret_2087 NC_013223.1 2375979 2376659 R TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: dma:DMR_42160 ATP synthase subunit A; ATP synthase F0 subunit A complement(2375979..2376659) Desulfohalobium retbaense DSM 5692 8419937 YP_003198950.1 CDS Dret_2088 NC_013223.1 2376675 2377094 R PFAM: ATP synthase I; KEGG: dma:DMR_42150 hypothetical membrane protein; ATP synthase I complement(2376675..2377094) Desulfohalobium retbaense DSM 5692 8419938 YP_003198951.1 CDS Dret_2089 NC_013223.1 2377066 2377371 R KEGG: dvl:Dvul_2064 ATP synthase protein I; ATP synthase protein I complement(2377066..2377371) Desulfohalobium retbaense DSM 5692 8419939 YP_003198952.1 CDS Dret_2090 NC_013223.1 2377642 2378418 D KEGG: dma:DMR_45820 hypothetical protein; hypothetical protein 2377642..2378418 Desulfohalobium retbaense DSM 5692 8419940 YP_003198953.1 CDS Dret_2091 NC_013223.1 2378492 2378995 D KEGG: pca:Pcar_1039 LysM domain-containing protein; hypothetical protein 2378492..2378995 Desulfohalobium retbaense DSM 5692 8419941 YP_003198954.1 CDS Dret_2092 NC_013223.1 2379470 2381332 D PFAM: pyruvate carboxyltransferase; KEGG: dde:Dde_0520 HMGL-like domain-containing protein; pyruvate carboxyltransferase 2379470..2381332 Desulfohalobium retbaense DSM 5692 8419942 YP_003198955.1 CDS Dret_2093 NC_013223.1 2381509 2382336 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dal:Dalk_1983 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein complement(2381509..2382336) Desulfohalobium retbaense DSM 5692 8419943 YP_003198956.1 CDS Dret_2094 NC_013223.1 2382411 2383928 R TIGRFAM: glycerol kinase; PFAM: Carbohydrate kinase, FGGY-like; KEGG: dat:HRM2_18340 GlpK; glycerol kinase complement(2382411..2383928) Desulfohalobium retbaense DSM 5692 8419944 YP_003198957.1 CDS Dret_2095 NC_013223.1 2384042 2385751 R KEGG: hch:HCH_06973 ABC-type sugar transport system, periplasmic component; sugar ABC transporter substrate-binding protein complement(2384042..2385751) Desulfohalobium retbaense DSM 5692 8419945 YP_003198958.1 CDS Dret_2096 NC_013223.1 2385979 2386278 R PFAM: Protein of unknown function DUF2160, transmembrane; KEGG: csa:Csal_2090 hypothetical protein; hypothetical protein complement(2385979..2386278) Desulfohalobium retbaense DSM 5692 8419946 YP_003198959.1 CDS Dret_2097 NC_013223.1 2386282 2387079 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3980 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2386282..2387079) Desulfohalobium retbaense DSM 5692 8419947 YP_003198960.1 CDS Dret_2098 NC_013223.1 2387076 2387945 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pin:Ping_3172 ABC sugar (glycerol) transporter binding protein inner membrane protein; binding-protein-dependent transport system inner membrane protein complement(2387076..2387945) Desulfohalobium retbaense DSM 5692 8419948 YP_003198961.1 CDS Dret_2099 NC_013223.1 2388072 2389169 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mmw:Mmwyl1_0379 ABC transporter related; ABC transporter complement(2388072..2389169) Desulfohalobium retbaense DSM 5692 8419949 YP_003198962.1 CDS Dret_2100 NC_013223.1 2389175 2390305 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rpe:RPE_1379 ABC transporter related; ABC transporter complement(2389175..2390305) Desulfohalobium retbaense DSM 5692 8419950 YP_003198963.1 CDS Dret_2101 NC_013223.1 2390654 2391928 R sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B complement(2390654..2391928) Desulfohalobium retbaense DSM 5692 8419951 YP_003198964.1 CDS Dret_2102 NC_013223.1 2391925 2393463 R TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dat:HRM2_42310 GlpA3; glycerol-3-phosphate dehydrogenase complement(2391925..2393463) Desulfohalobium retbaense DSM 5692 8419952 YP_003198965.1 CDS Dret_2103 NC_013223.1 2393564 2394223 R KEGG: dma:DMR_30760 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(2393564..2394223) Desulfohalobium retbaense DSM 5692 8419953 YP_003198966.1 CDS Dret_2104 NC_013223.1 2394220 2395026 R KEGG: dvm:DvMF_3006 hydroxyethylthiazole kinase; TIGRFAM: hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase; hydroxyethylthiazole kinase complement(2394220..2395026) Desulfohalobium retbaense DSM 5692 8419954 YP_003198967.1 CDS Dret_2105 NC_013223.1 2395353 2396270 D PFAM: conserved hypothetical protein; KEGG: pca:Pcar_0641 hypothetical protein; hypothetical protein 2395353..2396270 Desulfohalobium retbaense DSM 5692 8419955 YP_003198968.1 CDS Dret_2106 NC_013223.1 2396533 2396976 R PFAM: protein of unknown function DUF606; KEGG: dvm:DvMF_2381 protein of unknown function DUF606; hypothetical protein complement(2396533..2396976) Desulfohalobium retbaense DSM 5692 8419956 YP_003198969.1 CDS Dret_2107 NC_013223.1 2397178 2398047 D PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: dvl:Dvul_0536 hypothetical protein; hypothetical protein 2397178..2398047 Desulfohalobium retbaense DSM 5692 8419957 YP_003198970.1 CDS Dret_2108 NC_013223.1 2398057 2398875 D PFAM: protein of unknown function DUF62; KEGG: dvm:DvMF_1391 protein of unknown function DUF62; hypothetical protein 2398057..2398875 Desulfohalobium retbaense DSM 5692 8419958 YP_003198971.1 CDS Dret_2109 NC_013223.1 2398886 2399302 R PFAM: protein of unknown function UPF0047; KEGG: dde:Dde_3072 hypothetical protein; hypothetical protein complement(2398886..2399302) Desulfohalobium retbaense DSM 5692 8419959 YP_003198972.1 CDS Dret_2110 NC_013223.1 2399334 2401283 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: dvl:Dvul_0382 molybdenum cofactor synthesis domain-containing protein; LysR family transcriptional regulator complement(2399334..2401283) Desulfohalobium retbaense DSM 5692 8419960 YP_003198973.1 CDS truA NC_013223.1 2401518 2402282 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2401518..2402282 Desulfohalobium retbaense DSM 5692 8419961 YP_003198974.1 CDS Dret_2112 NC_013223.1 2402248 2403525 R TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: dde:Dde_3064 ribonuclease BN, putative; ribonuclease BN complement(2402248..2403525) Desulfohalobium retbaense DSM 5692 8419962 YP_003198975.1 CDS Dret_2113 NC_013223.1 2403693 2404442 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; KEGG: esa:ESA_01859 hypothetical protein; short-chain dehydrogenase/reductase SDR 2403693..2404442 Desulfohalobium retbaense DSM 5692 8419963 YP_003198976.1 CDS Dret_2114 NC_013223.1 2404468 2405781 D catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 2404468..2405781 Desulfohalobium retbaense DSM 5692 8419964 YP_003198977.1 CDS Dret_2115 NC_013223.1 2405994 2406434 R hypothetical protein complement(2405994..2406434) Desulfohalobium retbaense DSM 5692 8419965 YP_003198978.1 CDS Dret_2116 NC_013223.1 2406624 2407157 R PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: xac:XAC3515 cellulose synthase subunit C; hypothetical protein complement(2406624..2407157) Desulfohalobium retbaense DSM 5692 8419966 YP_003198979.1 CDS Dret_2117 NC_013223.1 2407308 2408483 D PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1647 major facilitator superfamily protein; major facilitator superfamily protein 2407308..2408483 Desulfohalobium retbaense DSM 5692 8419967 YP_003198980.1 CDS Dret_2118 NC_013223.1 2408742 2409716 D PFAM: protein of unknown function DUF81; KEGG: dvl:Dvul_0412 hypothetical protein; hypothetical protein 2408742..2409716 Desulfohalobium retbaense DSM 5692 8419968 YP_003198981.1 CDS Dret_2119 NC_013223.1 2409733 2410155 D KEGG: dvm:DvMF_1765 hypothetical protein; hypothetical protein 2409733..2410155 Desulfohalobium retbaense DSM 5692 8419969 YP_003198982.1 CDS Dret_2120 NC_013223.1 2410275 2411981 D PFAM: Protein of unknown function DUF2064; aminoglycoside phosphotransferase; KEGG: dde:Dde_0214 hypothetical protein; hypothetical protein 2410275..2411981 Desulfohalobium retbaense DSM 5692 8419970 YP_003198983.1 CDS Dret_2121 NC_013223.1 2411966 2412916 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: dde:Dde_0213 ATPase; ABC transporter 2411966..2412916 Desulfohalobium retbaense DSM 5692 8419971 YP_003198984.1 CDS Dret_2122 NC_013223.1 2412990 2414219 D PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_0759 putative ABC transporter solute- binding protein; putative ABC transporter solute-binding protein 2412990..2414219 Desulfohalobium retbaense DSM 5692 8419972 YP_003198985.1 CDS Dret_2123 NC_013223.1 2414222 2415085 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0308 ABC transporter, permease protein, putative; binding-protein-dependent transport system inner membrane protein 2414222..2415085 Desulfohalobium retbaense DSM 5692 8419973 YP_003198986.1 CDS Dret_2124 NC_013223.1 2415089 2415904 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0309 ABC transporter, permease protein, putative; binding-protein-dependent transport system inner membrane protein 2415089..2415904 Desulfohalobium retbaense DSM 5692 8419974 YP_003198987.1 CDS Dret_2125 NC_013223.1 2415986 2417419 D PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: dde:Dde_0590 cardiolipin synthetase 2; phospholipase D/Transphosphatidylase 2415986..2417419 Desulfohalobium retbaense DSM 5692 8419975 YP_003198988.1 CDS Dret_2126 NC_013223.1 2417557 2418207 R PFAM: protein of unknown function DUF1121; KEGG: sfu:Sfum_0236 protein of unknown function DUF1121; hypothetical protein complement(2417557..2418207) Desulfohalobium retbaense DSM 5692 8419976 YP_003198989.1 CDS Dret_2127 NC_013223.1 2418542 2420800 D KEGG: hch:HCH_03963 hypothetical protein; hypothetical protein 2418542..2420800 Desulfohalobium retbaense DSM 5692 8419977 YP_003198990.1 CDS Dret_2128 NC_013223.1 2420797 2422104 D PFAM: glycosyl transferase group 1; KEGG: sat:SYN_00036 glycosyltransferase; group 1 glycosyl transferase 2420797..2422104 Desulfohalobium retbaense DSM 5692 8419978 YP_003198991.1 CDS Dret_2129 NC_013223.1 2422107 2422784 D KEGG: dol:Dole_2781 SNARE associated Golgi protein; hypothetical protein 2422107..2422784 Desulfohalobium retbaense DSM 5692 8419979 YP_003198992.1 CDS Dret_2130 NC_013223.1 2423072 2425831 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: dde:Dde_2486 excinuclease ABC subunit A; excinuclease ABC subunit A 2423072..2425831 Desulfohalobium retbaense DSM 5692 8419980 YP_003198993.1 CDS Dret_2131 NC_013223.1 2425979 2428693 R PFAM: CoA-binding domain protein; GCN5-related N- acetyltransferase; KEGG: dvm:DvMF_1776 GCN5-related N- acetyltransferase; CoA-binding domain-containing protein complement(2425979..2428693) Desulfohalobium retbaense DSM 5692 8419981 YP_003198994.1 CDS Dret_2132 NC_013223.1 2429093 2431078 D TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: dvl:Dvul_0401 acetate--CoA ligase; acetate/CoA ligase 2429093..2431078 Desulfohalobium retbaense DSM 5692 8419982 YP_003198995.1 CDS Dret_2133 NC_013223.1 2431139 2431522 R KEGG: gsu:GSU1496 pilin domain-containing protein; hypothetical protein complement(2431139..2431522) Desulfohalobium retbaense DSM 5692 8419983 YP_003198996.1 CDS Dret_2134 NC_013223.1 2431800 2432507 D PFAM: protein of unknown function UPF0005; KEGG: dvm:DvMF_0927 protein of unknown function UPF0005; hypothetical protein 2431800..2432507 Desulfohalobium retbaense DSM 5692 8419984 YP_003198997.1 CDS Dret_2135 NC_013223.1 2432610 2433671 D KEGG: dvm:DvMF_0926 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 2432610..2433671 Desulfohalobium retbaense DSM 5692 8419985 YP_003198998.1 CDS Dret_2136 NC_013223.1 2433784 2435928 D KEGG: dma:DMR_37770 ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; SMART: Cold shock protein; ribonuclease R 2433784..2435928 Desulfohalobium retbaense DSM 5692 8419986 YP_003198999.1 CDS trmE NC_013223.1 2436109 2437494 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(2436109..2437494) Desulfohalobium retbaense DSM 5692 8419987 YP_003199000.1 CDS Dret_2138 NC_013223.1 2437847 2438527 R PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: dma:DMR_14810 hypothetical protein; single-stranded nucleic acid binding R3H domain-containing protein complement(2437847..2438527) Desulfohalobium retbaense DSM 5692 8419988 YP_003199001.1 CDS Dret_2139 NC_013223.1 2438552 2440204 R TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: 60 kDa inner membrane insertion protein; KEGG: dma:DMR_14800 inner membrane protein OxaA; YidC/Oxa1 family membrane protein insertase complement(2438552..2440204) Desulfohalobium retbaense DSM 5692 8419989 YP_003199002.1 CDS Dret_2140 NC_013223.1 2440216 2440455 R PFAM: protein of unknown function DUF37; KEGG: ank:AnaeK_4496 protein of unknown function DUF37; hypothetical protein complement(2440216..2440455) Desulfohalobium retbaense DSM 5692 8419990 YP_003199003.1 CDS Dret_2141 NC_013223.1 2440443 2440835 R TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: dvm:DvMF_0890 ribonuclease P protein component; ribonuclease P protein component complement(2440443..2440835) Desulfohalobium retbaense DSM 5692 8419991 YP_003199004.1 CDS Dret_2142 NC_013223.1 2440823 2440957 R TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: ngk:NGK_2661 50S ribosomal protein L34; 50S ribosomal protein L34 complement(2440823..2440957) Desulfohalobium retbaense DSM 5692 8419992 YP_003199005.1 CDS Dret_2143 NC_013223.1 2441135 2441743 D PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: dde:Dde_0373 phosphoesterase, PA-phosphatase related; PA-phosphatase like phosphoesterase 2441135..2441743 Desulfohalobium retbaense DSM 5692 8419993 YP_003199006.1 CDS Dret_2144 NC_013223.1 2441698 2441970 R KEGG: pca:Pcar_1272 hypothetical protein; hypothetical protein complement(2441698..2441970) Desulfohalobium retbaense DSM 5692 8419994 YP_003199007.1 CDS Dret_2145 NC_013223.1 2441954 2442703 R PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_1174 glycosyl transferase family protein; family 2 glycosyl transferase complement(2441954..2442703) Desulfohalobium retbaense DSM 5692 8419995 YP_003199008.1 CDS Dret_2146 NC_013223.1 2442868 2442960 D hypothetical protein 2442868..2442960 Desulfohalobium retbaense DSM 5692 8419997 YP_003199009.1 CDS Dret_2147 NC_013223.1 2443171 2444334 D PFAM: periplasmic binding protein; KEGG: dde:Dde_1622 iron transport periplasmic binding protein; periplasmic binding protein 2443171..2444334 Desulfohalobium retbaense DSM 5692 8419998 YP_003199010.1 CDS Dret_2148 NC_013223.1 2444336 2445406 D PFAM: transport system permease protein; KEGG: dde:Dde_1623 iron(III) dicitrate transport system permease protein; transport system permease 2444336..2445406 Desulfohalobium retbaense DSM 5692 8419999 YP_003199011.1 CDS Dret_2149 NC_013223.1 2445403 2446161 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1624 ATPase; ABC transporter 2445403..2446161 Desulfohalobium retbaense DSM 5692 8420000 YP_003199012.1 CDS Dret_2150 NC_013223.1 2446222 2446833 D PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: dde:Dde_1625 formylmethanofuran dehydrogenase, subunit E; formylmethanofuran dehydrogenase subunit E 2446222..2446833 Desulfohalobium retbaense DSM 5692 8420001 YP_003199013.1 CDS Dret_2151 NC_013223.1 2447203 2448420 D catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 2447203..2448420 Desulfohalobium retbaense DSM 5692 8420002 YP_003199014.1 CDS Dret_2152 NC_013223.1 2448609 2449337 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_0916 ABC transporter related; ABC transporter 2448609..2449337 Desulfohalobium retbaense DSM 5692 8420003 YP_003199015.1 CDS Dret_2153 NC_013223.1 2449379 2450200 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dvm:DvMF_3152 extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 2449379..2450200 Desulfohalobium retbaense DSM 5692 8420004 YP_003199016.1 CDS Dret_2154 NC_013223.1 2450348 2451049 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_3153 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 2450348..2451049 Desulfohalobium retbaense DSM 5692 8420005 YP_003199017.1 CDS Dret_2155 NC_013223.1 2451068 2451772 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_0919 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 2451068..2451772 Desulfohalobium retbaense DSM 5692 8420006 YP_003199018.1 CDS Dret_2156 NC_013223.1 2451762 2452652 D PFAM: ribosomal L11 methyltransferase; methyltransferase small; KEGG: dds:Ddes_1004 ribosomal L11 methyltransferase; ribosomal L11 methyltransferase 2451762..2452652 Desulfohalobium retbaense DSM 5692 8420007 YP_003199019.1 CDS Dret_2157 NC_013223.1 2452755 2453411 D PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; KEGG: dma:DMR_17660 putative DNA glycosylase; HhH-GPD family protein 2452755..2453411 Desulfohalobium retbaense DSM 5692 8420008 YP_003199020.1 CDS Dret_2158 NC_013223.1 2453417 2454565 D PFAM: Peptidase M23; KEGG: dvl:Dvul_0922 peptidase M23B; peptidase M23 2453417..2454565 Desulfohalobium retbaense DSM 5692 8420009 YP_003199021.1 CDS Dret_2159 NC_013223.1 2454927 2456195 D KEGG: dds:Ddes_0896 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; carboxyl-terminal protease 2454927..2456195 Desulfohalobium retbaense DSM 5692 8420010 YP_003199022.1 CDS Dret_2160 NC_013223.1 2456280 2457491 D PFAM: protein of unknown function DUF610 YibQ; KEGG: dvl:Dvul_0924 protein of unknown function DUF610, YibQ; hypothetical protein 2456280..2457491 Desulfohalobium retbaense DSM 5692 8420011 YP_003199023.1 CDS Dret_2161 NC_013223.1 2457518 2458492 D PFAM: protein of unknown function DUF534; KEGG: dps:DP3100 hypothetical protein; hypothetical protein 2457518..2458492 Desulfohalobium retbaense DSM 5692 8420012 YP_003199024.1 CDS Dret_2162 NC_013223.1 2458701 2459588 D PFAM: inner-membrane translocator; KEGG: dps:DP3101 hypothetical protein; inner-membrane translocator 2458701..2459588 Desulfohalobium retbaense DSM 5692 8420013 YP_003199025.1 CDS Dret_2163 NC_013223.1 2459585 2460379 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP3102 ABC transporter, ATP-binding protein; ABC transporter 2459585..2460379 Desulfohalobium retbaense DSM 5692 8420014 YP_003199026.1 CDS Dret_2164 NC_013223.1 2460515 2460934 D KEGG: dvm:DvMF_3160 nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase; nucleoside-diphosphate kinase 2460515..2460934 Desulfohalobium retbaense DSM 5692 8420015 YP_003199027.1 CDS Dret_2165 NC_013223.1 2460931 2461740 D KEGG: dde:Dde_1440 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 2460931..2461740 Desulfohalobium retbaense DSM 5692 8420016 YP_003199028.1 CDS Dret_2166 NC_013223.1 2462033 2462434 R PFAM: ROSMUCR transcriptional regulator; KEGG: dma:DMR_34370 hypothetical protein; MucR family transcriptional regulator complement(2462033..2462434) Desulfohalobium retbaense DSM 5692 8420017 YP_003199029.1 CDS aspA NC_013223.1 2462599 2464041 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(2462599..2464041) Desulfohalobium retbaense DSM 5692 8420018 YP_003199030.1 CDS Dret_2168 NC_013223.1 2464099 2464560 R TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: dvl:Dvul_0913 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut complement(2464099..2464560) Desulfohalobium retbaense DSM 5692 8420019 YP_003199031.1 CDS Dret_2169 NC_013223.1 2465043 2467619 D KEGG: dma:DMR_45660 putative glycogen phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; alpha-glucan phosphorylase 2465043..2467619 Desulfohalobium retbaense DSM 5692 8420020 YP_003199032.1 CDS Dret_2170 NC_013223.1 2467623 2468231 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_1484 tRNA (guanosine-2'-O-)- methyltransferase; tRNA guanosine-2'-O-methyltransferase 2467623..2468231 Desulfohalobium retbaense DSM 5692 8420021 YP_003199033.1 CDS Dret_2171 NC_013223.1 2468271 2469350 D KEGG: dvm:DvMF_1408 chorismate synthase; TIGRFAM: chorismate synthase; PFAM: chorismate synthase; chorismate synthase 2468271..2469350 Desulfohalobium retbaense DSM 5692 8420022 YP_003199034.1 CDS Dret_2172 NC_013223.1 2469594 2469989 R PFAM: regulatory protein LysR; KEGG: dma:DMR_43980 ModE family transcriptional regulator; putative ModE family transcriptional regulator complement(2469594..2469989) Desulfohalobium retbaense DSM 5692 8420023 YP_003199035.1 CDS Dret_2173 NC_013223.1 2470312 2471757 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2651 MATE efflux family protein; MATE efflux family protein 2470312..2471757 Desulfohalobium retbaense DSM 5692 8420024 YP_003199036.1 CDS Dret_2174 NC_013223.1 2471714 2472625 D PFAM: Uncharacterised conserved protein UCP018688; KEGG: dma:DMR_43960 hypothetical protein; hypothetical protein 2471714..2472625 Desulfohalobium retbaense DSM 5692 8420025 YP_003199037.1 CDS Dret_2175 NC_013223.1 2472818 2473108 D PFAM: chaperonin Cpn10; KEGG: dvl:Dvul_1195 chaperonin Cpn10; chaperonin Cpn10 2472818..2473108 Desulfohalobium retbaense DSM 5692 8420026 YP_003199038.1 CDS groEL NC_013223.1 2473141 2474790 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 2473141..2474790 Desulfohalobium retbaense DSM 5692 8420027 YP_003199039.1 CDS Dret_2177 NC_013223.1 2474990 2475838 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_1740 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 2474990..2475838 Desulfohalobium retbaense DSM 5692 8420028 YP_003199040.1 CDS Dret_2178 NC_013223.1 2475918 2476925 R KEGG: dde:Dde_3077 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(2475918..2476925) Desulfohalobium retbaense DSM 5692 8420029 YP_003199041.1 CDS Dret_2179 NC_013223.1 2482956 2484092 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(2482956..2484092) Desulfohalobium retbaense DSM 5692 8420035 YP_003199042.1 CDS obgE NC_013223.1 2484079 2485131 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(2484079..2485131) Desulfohalobium retbaense DSM 5692 8420036 YP_003199043.1 CDS rpmA NC_013223.1 2485239 2485505 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(2485239..2485505) Desulfohalobium retbaense DSM 5692 8420037 YP_003199044.1 CDS Dret_2182 NC_013223.1 2485521 2485832 R TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: dvl:Dvul_2058 50S ribosomal protein L21; 50S ribosomal protein L21 complement(2485521..2485832) Desulfohalobium retbaense DSM 5692 8420038 YP_003199045.1 CDS Dret_2183 NC_013223.1 2486011 2486781 R KEGG: dma:DMR_11140 competence protein F; competence protein F complement(2486011..2486781) Desulfohalobium retbaense DSM 5692 8420039 YP_003199046.1 CDS Dret_2184 NC_013223.1 2486741 2487346 R KEGG: dvu:DVU2767 iron-sulfur flavoprotein, putative; iron-sulfur flavoprotein complement(2486741..2487346) Desulfohalobium retbaense DSM 5692 8420040 YP_003199047.1 CDS Dret_2185 NC_013223.1 2487354 2487476 R hypothetical protein complement(2487354..2487476) Desulfohalobium retbaense DSM 5692 8420041 YP_003199048.1 CDS Dret_2186 NC_013223.1 2487721 2488353 R PFAM: beta-lactamase domain protein; KEGG: dde:Dde_0786 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein complement(2487721..2488353) Desulfohalobium retbaense DSM 5692 8420042 YP_003199049.1 CDS Dret_2187 NC_013223.1 2488353 2488874 R PFAM: nitroreductase; KEGG: dvl:Dvul_0545 nitroreductase; nitroreductase complement(2488353..2488874) Desulfohalobium retbaense DSM 5692 8420043 YP_003199050.1 CDS Dret_2188 NC_013223.1 2489165 2491570 D KEGG: dma:DMR_11170 GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat- containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: GGDEF domain containing protein; Tetratricopeptide repeat; diguanylate cyclase and serine/threonine protein kinase with TPR repeats 2489165..2491570 Desulfohalobium retbaense DSM 5692 8420044 YP_003199051.1 CDS Dret_2189 NC_013223.1 2491631 2491765 D hypothetical protein 2491631..2491765 Desulfohalobium retbaense DSM 5692 8420045 YP_003199052.1 CDS Dret_2190 NC_013223.1 2491746 2494385 R PFAM: peptidase M16 domain protein; KEGG: dde:Dde_1699 M16 family peptidase; peptidase M16 domain-containing protein complement(2491746..2494385) Desulfohalobium retbaense DSM 5692 8420046 YP_003199053.1 CDS Dret_2191 NC_013223.1 2494462 2494731 R KEGG: dvm:DvMF_0238 hypothetical protein; hypothetical protein complement(2494462..2494731) Desulfohalobium retbaense DSM 5692 8420047 YP_003199054.1 CDS Dret_2192 NC_013223.1 2494758 2497286 R PFAM: Protein of unknown function DUF2344; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvu:DVU1432 radical SAM domain-containing protein; hypothetical protein complement(2494758..2497286) Desulfohalobium retbaense DSM 5692 8420048 YP_003199055.1 CDS Dret_2193 NC_013223.1 2497359 2497721 R KEGG: dma:DMR_26780 hypothetical protein; hypothetical protein complement(2497359..2497721) Desulfohalobium retbaense DSM 5692 8420049 YP_003199056.1 CDS Dret_2194 NC_013223.1 2497818 2498378 D PFAM: Colicin V production protein; KEGG: dat:HRM2_35760 putative colicin V production protein-like protein; colicin V production protein 2497818..2498378 Desulfohalobium retbaense DSM 5692 8420050 YP_003199057.1 CDS mazG NC_013223.1 2498385 2499197 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 2498385..2499197 Desulfohalobium retbaense DSM 5692 8420051 YP_003199058.1 CDS Dret_2196 NC_013223.1 2499288 2499989 R TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: dde:Dde_1452 cytidylate kinase; cytidylate kinase complement(2499288..2499989) Desulfohalobium retbaense DSM 5692 8420052 YP_003199059.1 CDS Dret_2197 NC_013223.1 2499979 2501079 R TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: dma:DMR_39240 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase complement(2499979..2501079) Desulfohalobium retbaense DSM 5692 8420053 YP_003199060.1 CDS Dret_2198 NC_013223.1 2501445 2501723 R hypothetical protein complement(2501445..2501723) Desulfohalobium retbaense DSM 5692 8420054 YP_003199061.1 CDS Dret_2199 NC_013223.1 2501727 2503886 R TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; Secretin/TonB short domain; NolW domain protein; KEGG: aeh:Mlg_2759 type IV pilus secretin PilQ; type IV pilus secretin PilQ complement(2501727..2503886) Desulfohalobium retbaense DSM 5692 8420055 YP_003199062.1 CDS Dret_2200 NC_013223.1 2503873 2504415 R KEGG: dat:HRM2_11020 PilP; PilP protein complement(2503873..2504415) Desulfohalobium retbaense DSM 5692 8420056 YP_003199063.1 CDS Dret_2201 NC_013223.1 2504470 2505087 R KEGG: dat:HRM2_11010 PilO; Tfp pilus assembly protein PilO-like protein complement(2504470..2505087) Desulfohalobium retbaense DSM 5692 8420057 YP_003199064.1 CDS Dret_2202 NC_013223.1 2505080 2505655 R PFAM: Fimbrial assembly family protein; KEGG: dps:DP0109 fimbrial assembly protein PilN; fimbrial assembly family protein complement(2505080..2505655) Desulfohalobium retbaense DSM 5692 8420058 YP_003199065.1 CDS Dret_2203 NC_013223.1 2505665 2506642 R TIGRFAM: type IV pilus assembly protein PilM; KEGG: glo:Glov_1640 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM complement(2505665..2506642) Desulfohalobium retbaense DSM 5692 8420059 YP_003199066.1 CDS Dret_2204 NC_013223.1 2506797 2507249 R PFAM: UspA domain protein; KEGG: dvm:DvMF_0906 UspA domain protein; UspA domain-containing protein complement(2506797..2507249) Desulfohalobium retbaense DSM 5692 8420060 YP_003199067.1 CDS Dret_2205 NC_013223.1 2507474 2508358 R TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: dma:DMR_04930 4-hydroxybenzoate octaprenyltransferase; 4-hydroxybenzoate polyprenyltransferase complement(2507474..2508358) Desulfohalobium retbaense DSM 5692 8420061 YP_003199068.1 CDS Dret_2206 NC_013223.1 2508355 2509554 R KEGG: dde:Dde_0228 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA- binding S4 domain protein; tyrosyl-tRNA synthetase complement(2508355..2509554) Desulfohalobium retbaense DSM 5692 8420062 YP_003199069.1 CDS Dret_2207 NC_013223.1 2509595 2511151 R protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase complement(2509595..2511151) Desulfohalobium retbaense DSM 5692 8420063 YP_003199070.1 CDS Dret_2208 NC_013223.1 2511567 2511836 R KEGG: dma:DMR_04860 hypothetical protein; hypothetical protein complement(2511567..2511836) Desulfohalobium retbaense DSM 5692 8420065 YP_003199071.1 CDS Dret_2209 NC_013223.1 2511840 2512028 R KEGG: dma:DMR_04850 hypothetical protein; hypothetical protein complement(2511840..2512028) Desulfohalobium retbaense DSM 5692 8420066 YP_003199072.1 CDS glmU NC_013223.1 2512015 2513424 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(2512015..2513424) Desulfohalobium retbaense DSM 5692 8420067 YP_003199073.1 CDS atpC NC_013223.1 2513672 2514088 R produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit epsilon complement(2513672..2514088) Desulfohalobium retbaense DSM 5692 8420068 YP_003199074.1 CDS Dret_2212 NC_013223.1 2514112 2515518 R KEGG: dvl:Dvul_2195 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; ATP synthase F1 subunit beta complement(2514112..2515518) Desulfohalobium retbaense DSM 5692 8420069 YP_003199075.1 CDS Dret_2213 NC_013223.1 2515539 2516408 R produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(2515539..2516408) Desulfohalobium retbaense DSM 5692 8420070 YP_003199076.1 CDS Dret_2214 NC_013223.1 2516420 2517934 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(2516420..2517934) Desulfohalobium retbaense DSM 5692 8420071 YP_003199077.1 CDS Dret_2215 NC_013223.1 2517940 2518479 R produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(2517940..2518479) Desulfohalobium retbaense DSM 5692 8420072 YP_003199078.1 CDS Dret_2216 NC_013223.1 2518488 2519066 R TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dvm:DvMF_2827 H+transporting two-sector ATPase B/B' subunit; ATP synthase F0 subunit B complement(2518488..2519066) Desulfohalobium retbaense DSM 5692 8420073 YP_003199079.1 CDS Dret_2217 NC_013223.1 2519093 2519515 R PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dvm:DvMF_2826 H+transporting two-sector ATPase B/B' subunit; H+transporting two-sector ATPase subunit B/B' complement(2519093..2519515) Desulfohalobium retbaense DSM 5692 8420074 YP_003199080.1 CDS Dret_2218 NC_013223.1 2520079 2521200 R TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: dde:Dde_0992 rod shape-determining protein RodA; rod shape-determining protein RodA complement(2520079..2521200) Desulfohalobium retbaense DSM 5692 8420075 YP_003199081.1 CDS Dret_2219 NC_013223.1 2521187 2522989 R KEGG: dde:Dde_0993 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 complement(2521187..2522989) Desulfohalobium retbaense DSM 5692 8420076 YP_003199082.1 CDS Dret_2220 NC_013223.1 2522982 2523440 R KEGG: dvl:Dvul_2186 hypothetical protein; hypothetical protein complement(2522982..2523440) Desulfohalobium retbaense DSM 5692 8420077 YP_003199083.1 CDS Dret_2221 NC_013223.1 2523446 2524297 R TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: dde:Dde_0995 rod shape-determining protein MreC; rod shape-determining protein MreC complement(2523446..2524297) Desulfohalobium retbaense DSM 5692 8420078 YP_003199084.1 CDS Dret_2222 NC_013223.1 2524323 2525363 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(2524323..2525363) Desulfohalobium retbaense DSM 5692 8420079 YP_003199085.1 CDS Dret_2223 NC_013223.1 2525480 2526469 D KEGG: dvm:DvMF_2819 conserved hypothetical radical SAM protein; TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein 2525480..2526469 Desulfohalobium retbaense DSM 5692 8420080 YP_003199086.1 CDS Dret_2224 NC_013223.1 2526462 2526947 D TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: dma:DMR_04660 putative methylated-DNA-- protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 2526462..2526947 Desulfohalobium retbaense DSM 5692 8420081 YP_003199087.1 CDS Dret_2225 NC_013223.1 2526944 2528542 D PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: pag:PLES_35201 putative ATP-binding component of ABC transporter; ABC transporter 2526944..2528542 Desulfohalobium retbaense DSM 5692 8420082 YP_003199088.1 CDS Dret_2226 NC_013223.1 2528667 2529503 R PFAM: protein of unknown function DUF1009; KEGG: dvm:DvMF_3002 protein of unknown function DUF1009; hypothetical protein complement(2528667..2529503) Desulfohalobium retbaense DSM 5692 8420083 YP_003199089.1 CDS Dret_2227 NC_013223.1 2529615 2530415 R TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N- acetylglu cosamineO-acyltransferase; KEGG: dvm:DvMF_3001 UDP-N-acetylglucosamine acyltransferase; acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase complement(2529615..2530415) Desulfohalobium retbaense DSM 5692 8420084 YP_003199090.1 CDS Dret_2228 NC_013223.1 2530418 2530876 R TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: dde:Dde_1373 (3R)-hydroxymyristoyl-ACP dehydratase; 3-hydroxyacyl-ACP dehydratase complement(2530418..2530876) Desulfohalobium retbaense DSM 5692 8420085 YP_003199091.1 CDS Dret_2229 NC_013223.1 2530869 2531909 R TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase LpxD; transferase hexapeptide repeat containing protein; KEGG: dde:Dde_1372 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase complement(2530869..2531909) Desulfohalobium retbaense DSM 5692 8420086 YP_003199092.1 CDS Dret_2230 NC_013223.1 2531924 2532463 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: gme:Gmet_2356 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp complement(2531924..2532463) Desulfohalobium retbaense DSM 5692 8420087 YP_003199093.1 CDS Dret_2231 NC_013223.1 2532495 2535173 R TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: dma:DMR_38540 hypothetical protein; outer membrane protein assembly complex, YaeT protein complement(2532495..2535173) Desulfohalobium retbaense DSM 5692 8420088 YP_003199094.1 CDS Dret_2232 NC_013223.1 2535320 2536009 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dma:DMR_38530 lipoprotein releasing system ATP-binding protein LolD; ABC transporter complement(2535320..2536009) Desulfohalobium retbaense DSM 5692 8420089 YP_003199095.1 CDS Dret_2233 NC_013223.1 2536002 2537231 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: dma:DMR_38520 lipoprotein releasing system transmembrane protein LolC; lipoprotein releasing system transmembrane protein LolC/E family complement(2536002..2537231) Desulfohalobium retbaense DSM 5692 8420090 YP_003199096.1 CDS Dret_2234 NC_013223.1 2537231 2538745 R TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dde:Dde_1365 lysyl-tRNA synthetase; lysyl-tRNA synthetase complement(2537231..2538745) Desulfohalobium retbaense DSM 5692 8420091 YP_003199097.1 CDS Dret_2235 NC_013223.1 2539261 2540010 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: dvl:Dvul_2537 rare lipoprotein A; rare lipoprotein A 2539261..2540010 Desulfohalobium retbaense DSM 5692 8420093 YP_003199098.1 CDS Dret_2236 NC_013223.1 2539994 2540290 R PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: dde:Dde_0517 histone-like DNA-binding protein; histone family protein DNA-binding protein complement(2539994..2540290) Desulfohalobium retbaense DSM 5692 8420094 YP_003199099.1 CDS Dret_2237 NC_013223.1 2540302 2540718 R PFAM: histidine triad (HIT) protein; KEGG: dvl:Dvul_2539 histidine triad (HIT) protein; histidine triad (HIT) protein complement(2540302..2540718) Desulfohalobium retbaense DSM 5692 8420095 YP_003199100.1 CDS Dret_2238 NC_013223.1 2541243 2542307 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dma:DMR_02290 hypothetical protein; radical SAM protein 2541243..2542307 Desulfohalobium retbaense DSM 5692 8420096 YP_003199101.1 CDS Dret_2239 NC_013223.1 2542621 2543799 D PFAM: amidohydrolase; Amidohydrolase 3; KEGG: dma:DMR_02310 amidohydrolase family protein; S-adenosylhomocysteine deaminase 2542621..2543799 Desulfohalobium retbaense DSM 5692 8420097 YP_003199102.1 CDS pyrB NC_013223.1 2543858 2544790 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 2543858..2544790 Desulfohalobium retbaense DSM 5692 8420098 YP_003199103.1 CDS Dret_2241 NC_013223.1 2544792 2546096 D TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: dvl:Dvul_0463 dihydroorotase, multifunctional complex type; dihydroorotase, multifunctional complex type 2544792..2546096 Desulfohalobium retbaense DSM 5692 8420099 YP_003199104.1 CDS Dret_2242 NC_013223.1 2546103 2547497 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: geo:Geob_3370 two component, sigma54 specific, transcriptional regulator, Fis family; two component, sigma54 specific, transcriptional regulator, Fis family 2546103..2547497 Desulfohalobium retbaense DSM 5692 8420100 YP_003199105.1 CDS Dret_2243 NC_013223.1 2547748 2548827 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2547748..2548827 Desulfohalobium retbaense DSM 5692 8420101 YP_003199106.1 CDS hisI NC_013223.1 2548850 2549224 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 2548850..2549224 Desulfohalobium retbaense DSM 5692 8420102 YP_003199107.1 CDS Dret_2245 NC_013223.1 2549226 2550107 D KEGG: dma:DMR_00640 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain; ATP phosphoribosyltransferase 2549226..2550107 Desulfohalobium retbaense DSM 5692 8420103 YP_003199108.1 CDS Dret_2246 NC_013223.1 2550453 2551211 D PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: dat:HRM2_11040 TPR repeat domain protein; hypothetical protein 2550453..2551211 Desulfohalobium retbaense DSM 5692 8420104 YP_003199109.1 CDS Dret_2247 NC_013223.1 2551150 2552547 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dal:Dalk_2572 radical SAM domain protein; radical SAM protein 2551150..2552547 Desulfohalobium retbaense DSM 5692 8420105 YP_003199110.1 CDS Dret_2248 NC_013223.1 2552762 2554573 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2552762..2554573 Desulfohalobium retbaense DSM 5692 8420106 YP_003199111.1 CDS Dret_2249 NC_013223.1 2554682 2555281 D KEGG: dma:DMR_39450 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24, S26A and S26B, conserved region; signal peptidase I 2554682..2555281 Desulfohalobium retbaense DSM 5692 8420107 YP_003199112.1 CDS Dret_2250 NC_013223.1 2555334 2556869 D KEGG: dma:DMR_39060 competence protein ComM; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 2555334..2556869 Desulfohalobium retbaense DSM 5692 8420108 YP_003199113.1 CDS Dret_2251 NC_013223.1 2556950 2558314 D PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: dvm:DvMF_0011 serine dehydratase alpha chain; serine dehydratase subunit alpha 2556950..2558314 Desulfohalobium retbaense DSM 5692 8420109 YP_003199114.1 CDS Dret_2252 NC_013223.1 2558423 2559847 R KEGG: dma:DMR_05180 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase complement(2558423..2559847) Desulfohalobium retbaense DSM 5692 8420110 YP_003199115.1 CDS Dret_2253 NC_013223.1 2560068 2560838 R PFAM: acyl-ACP thioesterase; KEGG: dvm:DvMF_1428 acyl-ACP thioesterase; acyl-ACP thioesterase complement(2560068..2560838) Desulfohalobium retbaense DSM 5692 8420111 YP_003199116.1 CDS Dret_2254 NC_013223.1 2560950 2562644 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: ppd:Ppro_1974 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2560950..2562644) Desulfohalobium retbaense DSM 5692 8420112 YP_003199117.1 CDS Dret_2255 NC_013223.1 2563000 2564052 R PFAM: homocysteine S-methyltransferase; KEGG: pub:SAR11_1173 betaine-homocysteine methyltransferase; homocysteine S-methyltransferase complement(2563000..2564052) Desulfohalobium retbaense DSM 5692 8420113 YP_003199118.1 CDS Dret_2256 NC_013223.1 2564224 2565072 R KEGG: rfr:Rfer_1769 hypothetical protein; hypothetical protein complement(2564224..2565072) Desulfohalobium retbaense DSM 5692 8420114 YP_003199119.1 CDS Dret_2257 NC_013223.1 2565094 2565630 R TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: gbm:Gbem_3881 hydrogenase maturation protease; hydrogenase maturation protease complement(2565094..2565630) Desulfohalobium retbaense DSM 5692 8420115 YP_003199120.1 CDS Dret_2258 NC_013223.1 2565630 2567090 R PFAM: nickel-dependent hydrogenase large subunit; KEGG: afw:Anae109_4306 nickel-dependent hydrogenase large subunit; nickel-dependent hydrogenase large subunit complement(2565630..2567090) Desulfohalobium retbaense DSM 5692 8420116 YP_003199121.1 CDS Dret_2259 NC_013223.1 2567107 2568111 R PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: afw:Anae109_4307 methyl-viologen-reducing hydrogenase delta subunit; NADH ubiquinone oxidoreductase 20 kDa subunit complement(2567107..2568111) Desulfohalobium retbaense DSM 5692 8420117 YP_003199122.1 CDS Dret_2260 NC_013223.1 2568135 2570558 R PFAM: methyl-viologen-reducing hydrogenase delta subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; KEGG: dal:Dalk_1624 methyl-viologen-reducing hydrogenase delta subunit; methyl-viologen-reducing hydrogenase delta subunit complement(2568135..2570558) Desulfohalobium retbaense DSM 5692 8420118 YP_003199123.1 CDS Dret_2261 NC_013223.1 2570686 2572662 R TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: wsu:WS1121 heavy metal-transporting ATPase; heavy metal translocating P-type ATPase complement(2570686..2572662) Desulfohalobium retbaense DSM 5692 8420119 YP_003199124.1 CDS Dret_2262 NC_013223.1 2572846 2573205 R PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: dde:Dde_0747 ArsR family transcriptional regulator; ArsR family transcriptional regulator complement(2572846..2573205) Desulfohalobium retbaense DSM 5692 8420120 YP_003199125.1 CDS Dret_2263 NC_013223.1 2573306 2574220 R PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: dol:Dole_0958 hypothetical protein; hypothetical protein complement(2573306..2574220) Desulfohalobium retbaense DSM 5692 8420121 YP_003199126.1 CDS Dret_2264 NC_013223.1 2574467 2575522 D KEGG: pca:Pcar_2611 peptide methionine sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; Methionine sulfoxide reductase A; methionine-R-sulfoxide reductase 2574467..2575522 Desulfohalobium retbaense DSM 5692 8420122 YP_003199127.1 CDS Dret_2265 NC_013223.1 2575602 2576501 R PFAM: Peptidase M23; KEGG: dde:Dde_2203 M24/M37 family peptidase; peptidase M23 complement(2575602..2576501) Desulfohalobium retbaense DSM 5692 8420123 YP_003199128.1 CDS Dret_2266 NC_013223.1 2576643 2577146 R PFAM: protein of unknown function UPF0066; KEGG: dde:Dde_2646 hypothetical protein; hypothetical protein complement(2576643..2577146) Desulfohalobium retbaense DSM 5692 8420124 YP_003199129.1 CDS Dret_2267 NC_013223.1 2577414 2578631 D TIGRFAM: ammonium transporter; PFAM: ammonium transporter; KEGG: dma:DMR_34890 ammonium transporter; ammonium transporter 2577414..2578631 Desulfohalobium retbaense DSM 5692 8420125 YP_003199130.1 CDS Dret_2268 NC_013223.1 2578686 2579024 D PFAM: nitrogen regulatory protein P-II; KEGG: dvl:Dvul_1830 nitrogen regulatory protein P- II; nitrogen regulatory protein P-II 2578686..2579024 Desulfohalobium retbaense DSM 5692 8420126 YP_003199131.1 CDS Dret_2269 NC_013223.1 2579036 2581492 D PFAM: GlnD PII-uridylyltransferase; amino acid- binding ACT domain protein; KEGG: dde:Dde_2309 metal dependent phosphohydrolase; (Protein-PII) uridylyltransferase 2579036..2581492 Desulfohalobium retbaense DSM 5692 8420127 YP_003199132.1 CDS Dret_2270 NC_013223.1 2581560 2581871 R KEGG: dvm:DvMF_2817 hypothetical protein; hypothetical protein complement(2581560..2581871) Desulfohalobium retbaense DSM 5692 8420128 YP_003199133.1 CDS Dret_2271 NC_013223.1 2582049 2582894 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dol:Dole_2763 substrate-binding region of ABC- type glycine betaine transport system; glycine/betaine ABC transporter substrate-binding protein complement(2582049..2582894) Desulfohalobium retbaense DSM 5692 8420129 YP_003199134.1 CDS Dret_2272 NC_013223.1 2582973 2583812 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dol:Dole_2764 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2582973..2583812) Desulfohalobium retbaense DSM 5692 8420130 YP_003199135.1 CDS Dret_2273 NC_013223.1 2583912 2585111 R KEGG: dol:Dole_2765 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase complement(2583912..2585111) Desulfohalobium retbaense DSM 5692 8420131 YP_003199136.1 CDS Dret_2274 NC_013223.1 2585655 2585843 D hypothetical protein 2585655..2585843 Desulfohalobium retbaense DSM 5692 8420132 YP_003199137.1 CDS Dret_2275 NC_013223.1 2585846 2586046 D TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dma:DMR_08090 hypothetical protein; FmdB family regulatory protein 2585846..2586046 Desulfohalobium retbaense DSM 5692 8420133 YP_003199138.1 CDS Dret_2276 NC_013223.1 2586178 2586888 R PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_1271 glycosyl transferase family protein; family 2 glycosyl transferase complement(2586178..2586888) Desulfohalobium retbaense DSM 5692 8420134 YP_003199139.1 CDS Dret_2277 NC_013223.1 2587228 2587719 D TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; KEGG: dde:Dde_3605 bifunctional ADP-heptose synthase; rfaE bifunctional protein 2587228..2587719 Desulfohalobium retbaense DSM 5692 8420135 YP_003199140.1 CDS Dret_2278 NC_013223.1 2587716 2589515 D PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: gbm:Gbem_0904 type II secretion system protein E; type II secretion system protein E 2587716..2589515 Desulfohalobium retbaense DSM 5692 8420136 YP_003199141.1 CDS Dret_2279 NC_013223.1 2589569 2590693 D PFAM: iron-containing alcohol dehydrogenase; KEGG: mxa:MXAN_2881 alcohol dehydrogenase, iron- containing; iron-containing alcohol dehydrogenase 2589569..2590693 Desulfohalobium retbaense DSM 5692 8420137 YP_003199142.1 CDS Dret_2280 NC_013223.1 2590779 2591606 D KEGG: dat:HRM2_16410 UspA12; UspA protein 2590779..2591606 Desulfohalobium retbaense DSM 5692 8420138 YP_003199143.1 CDS Dret_2281 NC_013223.1 2591823 2592179 R TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: sfu:Sfum_1903 putative regulatory protein, FmdB family; FmdB family regulatory protein complement(2591823..2592179) Desulfohalobium retbaense DSM 5692 8420139 YP_003199144.1 CDS Dret_2282 NC_013223.1 2592657 2593259 D PFAM: MGS domain protein; KEGG: dds:Ddes_0880 IMP cyclohydrolase; IMP cyclohydrolase 2592657..2593259 Desulfohalobium retbaense DSM 5692 8420140 YP_003199145.1 CDS Dret_2283 NC_013223.1 2593269 2594918 D TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: dvm:DvMF_1947 GTP-binding protein HflX; GTP-binding proten HflX 2593269..2594918 Desulfohalobium retbaense DSM 5692 8420141 YP_003199146.1 CDS Dret_2284 NC_013223.1 2595262 2595852 R PFAM: protein of unknown function DUF205; KEGG: dvm:DvMF_1944 protein of unknown function DUF205; hypothetical protein complement(2595262..2595852) Desulfohalobium retbaense DSM 5692 8420142 YP_003199147.1 CDS Dret_2285 NC_013223.1 2595828 2597897 R PFAM: ribonuclease II; KEGG: dde:Dde_0173 RNB-like family protein; ribonuclease II complement(2595828..2597897) Desulfohalobium retbaense DSM 5692 8420143 YP_003199148.1 CDS Dret_2286 NC_013223.1 2597988 2599265 R KEGG: dde:Dde_0174 phosphoribosylaminoimidazolecarboxamide formyltransferase; PFAM: AICARFT/IMPCHase bienzyme formylation region; SMART: AICARFT/IMPCHase bienzyme formylation region; IMP cyclohydrolase complement(2597988..2599265) Desulfohalobium retbaense DSM 5692 8420144 YP_003199149.1 CDS Dret_2287 NC_013223.1 2599424 2599756 D KEGG: dvm:DvMF_1941 hypothetical protein; hypothetical protein 2599424..2599756 Desulfohalobium retbaense DSM 5692 8420145 YP_003199150.1 CDS Dret_2288 NC_013223.1 2599670 2601118 R PFAM: Lytic transglycosylase catalytic; KEGG: dde:Dde_0175 transglycosylase SLT domain- containing protein; Lytic transglycosylase catalytic complement(2599670..2601118) Desulfohalobium retbaense DSM 5692 8420146 YP_003199151.1 CDS Dret_2289 NC_013223.1 2601220 2602500 D KEGG: dvl:Dvul_0183 adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase; adenylosuccinate synthetase 2601220..2602500 Desulfohalobium retbaense DSM 5692 8420147 YP_003199152.1 CDS Dret_2290 NC_013223.1 2602595 2603455 D KEGG: dde:Dde_0177 DNA polymerase III, delta prime subunit, putative; DNA polymerase III, delta prime subunit 2602595..2603455 Desulfohalobium retbaense DSM 5692 8420148 YP_003199153.1 CDS Dret_2291 NC_013223.1 2603385 2604575 R PFAM: YibE/F family protein; KEGG: dde:Dde_1217 multitransmembrane protein-like; hypothetical protein complement(2603385..2604575) Desulfohalobium retbaense DSM 5692 8420149 YP_003199154.1 CDS Dret_2292 NC_013223.1 2604653 2606116 R PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; KEGG: dde:Dde_1216 alkaline phosphatase; alkaline phosphatase complement(2604653..2606116) Desulfohalobium retbaense DSM 5692 8420150 YP_003199155.1 CDS Dret_2293 NC_013223.1 2606371 2606718 D PFAM: zinc finger DksA/TraR C4-type; KEGG: dvm:DvMF_0008 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 2606371..2606718 Desulfohalobium retbaense DSM 5692 8420151 YP_003199156.1 CDS Dret_2294 NC_013223.1 2607058 2607867 D TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: gme:Gmet_2909 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase 2607058..2607867 Desulfohalobium retbaense DSM 5692 8420152 YP_003199157.1 CDS Dret_2295 NC_013223.1 2607848 2608630 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:bll3318 ABC transporter ATP-binding protein; ABC transporter 2607848..2608630 Desulfohalobium retbaense DSM 5692 8420153 YP_003199158.1 CDS Dret_2296 NC_013223.1 2608612 2609364 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_04310 ABC-type transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2608612..2609364 Desulfohalobium retbaense DSM 5692 8420154 YP_003199159.1 CDS Dret_2297 NC_013223.1 2609697 2610635 D PFAM: NMT1/THI5 like domain protein; KEGG: csa:Csal_1934 NlpA lipoprotein; NMT1/THI5 like domain-containing protein 2609697..2610635 Desulfohalobium retbaense DSM 5692 8420155 YP_003199160.1 CDS Dret_2298 NC_013223.1 2610769 2612169 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: sfu:Sfum_3200 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase complement(2610769..2612169) Desulfohalobium retbaense DSM 5692 8420156 YP_003199161.1 CDS Dret_2299 NC_013223.1 2612232 2612414 R hypothetical protein complement(2612232..2612414) Desulfohalobium retbaense DSM 5692 8420157 YP_003199162.1 CDS Dret_2300 NC_013223.1 2612651 2613820 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(2612651..2613820) Desulfohalobium retbaense DSM 5692 8420158 YP_003199163.1 CDS Dret_2301 NC_013223.1 2613880 2615301 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(2613880..2615301) Desulfohalobium retbaense DSM 5692 8420159 YP_003199164.1 CDS Dret_2302 NC_013223.1 2615448 2616377 R PFAM: Methyltransferase type 11; regulatory protein ArsR; Methyltransferase type 12; SMART: regulatory protein ArsR; KEGG: dvl:Dvul_2348 methyltransferase type 11; ArsR family transcriptional regulator complement(2615448..2616377) Desulfohalobium retbaense DSM 5692 8420160 YP_003199165.1 CDS Dret_2303 NC_013223.1 2616599 2617069 D PFAM: protein of unknown function DUF721; KEGG: dma:DMR_42040 hypothetical protein; hypothetical protein 2616599..2617069 Desulfohalobium retbaense DSM 5692 8420161 YP_003199166.1 CDS Dret_2304 NC_013223.1 2617160 2617504 D KEGG: dma:DMR_42030 hypothetical protein; hypothetical protein 2617160..2617504 Desulfohalobium retbaense DSM 5692 8420162 YP_003199167.1 CDS Dret_2305 NC_013223.1 2618453 2619622 D PFAM: domain of unknown function DUF1745; FIST C domain; KEGG: dma:DMR_35190 putative phosphatase; hypothetical protein 2618453..2619622 Desulfohalobium retbaense DSM 5692 8420165 YP_003199168.1 CDS Dret_2306 NC_013223.1 2619622 2621061 D PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: dma:DMR_43850 two-component hybrid sensor and regulator; histidine kinase 2619622..2621061 Desulfohalobium retbaense DSM 5692 8420166 YP_003199169.1 CDS Dret_2307 NC_013223.1 2621087 2622541 R TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: dma:DMR_17530 succinate-semialdehyde dehydrogenase; succinate-semialdehyde dehydrogenase complement(2621087..2622541) Desulfohalobium retbaense DSM 5692 8420167 YP_003199170.1 CDS Dret_2308 NC_013223.1 2622651 2626340 R biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase complement(2622651..2626340) Desulfohalobium retbaense DSM 5692 8420168 YP_003199171.1 CDS Dret_2309 NC_013223.1 2626387 2627160 R PFAM: ketose-bisphosphate aldolase class-II; KEGG: hypothetical protein LOC100262718; ketose-bisphosphate aldolase class-II complement(2626387..2627160) Desulfohalobium retbaense DSM 5692 8420169 YP_003199172.1 CDS Dret_2310 NC_013223.1 2627178 2627666 R PFAM: Rubrerythrin; KEGG: dde:Dde_1214 hypothetical protein; rubrerythrin complement(2627178..2627666) Desulfohalobium retbaense DSM 5692 8420170 YP_003199173.1 CDS Dret_2311 NC_013223.1 2627682 2628527 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dma:DMR_01960 putative oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(2627682..2628527) Desulfohalobium retbaense DSM 5692 8420171 YP_003199174.1 CDS Dret_2312 NC_013223.1 2628520 2629569 R KEGG: dma:DMR_01950 iron-sulfur binding protein; iron-sulfur binding protein complement(2628520..2629569) Desulfohalobium retbaense DSM 5692 8420172 YP_003199175.1 CDS Dret_2313 NC_013223.1 2629569 2630525 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: dvl:Dvul_0829 methyl-viologen-reducing hydrogenase, delta subunit; 4Fe-4S ferredoxin complement(2629569..2630525) Desulfohalobium retbaense DSM 5692 8420173 YP_003199176.1 CDS Dret_2314 NC_013223.1 2630553 2630999 R PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_3527 hydrogenase, iron-sulfur cluster- binding subunit, putative; methyl-viologen-reducing hydrogenase delta subunit complement(2630553..2630999) Desulfohalobium retbaense DSM 5692 8420174 YP_003199177.1 CDS Dret_2315 NC_013223.1 2630966 2632948 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dma:DMR_01920 heterodisulfide reductase subunit A; 4Fe-4S ferredoxin complement(2630966..2632948) Desulfohalobium retbaense DSM 5692 8420175 YP_003199178.1 CDS Dret_2316 NC_013223.1 2633034 2633936 R PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dde:Dde_1208 succinate dehydrogenase subunit C; CoB--CoM heterodisulfide reductase complement(2633034..2633936) Desulfohalobium retbaense DSM 5692 8420176 YP_003199179.1 CDS Dret_2317 NC_013223.1 2633939 2634580 R KEGG: dma:DMR_01900 heterodisulfide reductase subunit C; heterodisulfide reductase subunit C complement(2633939..2634580) Desulfohalobium retbaense DSM 5692 8420177 YP_003199180.1 CDS Dret_2318 NC_013223.1 2634698 2634922 R PFAM: thiamineS protein; KEGG: gme:Gmet_1044 thiamine S; hypothetical protein complement(2634698..2634922) Desulfohalobium retbaense DSM 5692 8420178 YP_003199181.1 CDS Dret_2319 NC_013223.1 2634930 2636810 R KEGG: gsu:GSU0910 aldehyde:ferredoxin oxidoreductase, tungsten-containing; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase complement(2634930..2636810) Desulfohalobium retbaense DSM 5692 8420179 YP_003199182.1 CDS Dret_2320 NC_013223.1 2636861 2638165 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Citrate transporter; KEGG: tmz:Tmz1t_0543 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(2636861..2638165) Desulfohalobium retbaense DSM 5692 8420180 YP_003199183.1 CDS Dret_2321 NC_013223.1 2638167 2638694 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dat:HRM2_03160 DctQ1; tripartite AtP-independent periplasmic transporter subunit DctQ complement(2638167..2638694) Desulfohalobium retbaense DSM 5692 8420181 YP_003199184.1 CDS Dret_2322 NC_013223.1 2638728 2639726 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dat:HRM2_03170 DctP1; TRAP dicarboxylate transporter subunit DctP complement(2638728..2639726) Desulfohalobium retbaense DSM 5692 8420182 YP_003199185.1 CDS Dret_2323 NC_013223.1 2639799 2640653 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rpc:RPC_1046 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase complement(2639799..2640653) Desulfohalobium retbaense DSM 5692 8420183 YP_003199186.1 CDS Dret_2324 NC_013223.1 2640716 2641879 R PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: dvm:DvMF_2005 altronate dehydratase; altronate dehydratase complement(2640716..2641879) Desulfohalobium retbaense DSM 5692 8420184 YP_003199187.1 CDS Dret_2325 NC_013223.1 2641883 2642161 R PFAM: SAF domain protein; KEGG: dds:Ddes_2374 SAF domain protein; SAF domain-containing protein complement(2641883..2642161) Desulfohalobium retbaense DSM 5692 8420185 YP_003199188.1 CDS Dret_2326 NC_013223.1 2642207 2643469 R PFAM: Protein of unknown function DUF2088; KEGG: dvm:DvMF_1997 hypothetical protein; hypothetical protein complement(2642207..2643469) Desulfohalobium retbaense DSM 5692 8420186 YP_003199189.1 CDS Dret_2327 NC_013223.1 2643739 2645307 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; GAF domain protein; KEGG: dds:Ddes_2373 sigma54 specific transcriptional regulator, fis family; Fis family NifA subfamily transcriptional regulator 2643739..2645307 Desulfohalobium retbaense DSM 5692 8420187 YP_003199190.1 CDS Dret_2328 NC_013223.1 2645350 2645688 R KEGG: dvm:DvMF_1926 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator complement(2645350..2645688) Desulfohalobium retbaense DSM 5692 8420188 YP_003199191.1 CDS Dret_2330 NC_013223.1 2648889 2649155 D PFAM: lipid A biosynthesis domain protein; KEGG: atc:AGR_C_4037 hypothetical protein; lipid A biosynthesis domain-containing protein 2648889..2649155 Desulfohalobium retbaense DSM 5692 8420190 YP_003199192.1 CDS Dret_2331 NC_013223.1 2649536 2650669 D PFAM: Extracellular ligand-binding receptor; KEGG: dma:DMR_01770 putative ABC transporter substrate binding protein; extracellular ligand-binding receptor 2649536..2650669 Desulfohalobium retbaense DSM 5692 8420191 YP_003199193.1 CDS Dret_2332 NC_013223.1 2650669 2653551 D KEGG: pin:Ping_1111 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; metal-dependent phosphohydrolase HD sub domain; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; metal-dependent phosphohydrolase HD region; PAS domain containing protein; diguanylate cyclase and metal dependent phosphohydrolase 2650669..2653551 Desulfohalobium retbaense DSM 5692 8420192 YP_003199194.1 CDS Dret_2333 NC_013223.1 2653786 2655522 D KEGG: dvm:DvMF_2350 diguanylate cyclase with PAS/PAC and GAF sensors; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 2653786..2655522 Desulfohalobium retbaense DSM 5692 8420193 YP_003199195.1 CDS Dret_2334 NC_013223.1 2655816 2656277 R PFAM: thioesterase superfamily protein; KEGG: dar:Daro_1078 thioesterase superfamily protein; thioesterase superfamily protein complement(2655816..2656277) Desulfohalobium retbaense DSM 5692 8420194 YP_003199196.1 CDS Dret_2335 NC_013223.1 2656437 2656715 R hypothetical protein complement(2656437..2656715) Desulfohalobium retbaense DSM 5692 8420195 YP_003199197.1 CDS Dret_2336 NC_013223.1 2656766 2657044 D hypothetical protein 2656766..2657044 Desulfohalobium retbaense DSM 5692 8420196 YP_003199198.1 CDS Dret_2337 NC_013223.1 2657154 2658719 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gur:Gura_1282 putative GAF sensor protein; Fis family sigma-54 specific transcriptional regulator complement(2657154..2658719) Desulfohalobium retbaense DSM 5692 8420197 YP_003199199.1 CDS Dret_2338 NC_013223.1 2658973 2660094 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_0402 secretion protein HlyD; RND family efflux transporter MFP subunit 2658973..2660094 Desulfohalobium retbaense DSM 5692 8420198 YP_003199200.1 CDS Dret_2339 NC_013223.1 2660098 2663226 D TIGRFAM: transporter, hydrophobe/amphiphile efflux- 1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: dde:Dde_0401 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 2660098..2663226 Desulfohalobium retbaense DSM 5692 8420199 YP_003199201.1 CDS Dret_2340 NC_013223.1 2663335 2664843 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dat:HRM2_48490 outer membrane protein; NodT family RND efflux system outer membrane lipoprotein 2663335..2664843 Desulfohalobium retbaense DSM 5692 8420200 YP_003199202.1 CDS Dret_2341 NC_013223.1 2664987 2665262 D KEGG: dat:HRM2_34670 hypothetical protein; hypothetical protein 2664987..2665262 Desulfohalobium retbaense DSM 5692 8420201 YP_003199203.1 CDS Dret_2342 NC_013223.1 2665672 2666745 D hypothetical protein 2665672..2666745 Desulfohalobium retbaense DSM 5692 8420202 YP_003199204.1 CDS Dret_2343 NC_013223.1 2666742 2666918 D hypothetical protein 2666742..2666918 Desulfohalobium retbaense DSM 5692 8420203 YP_003199205.1 CDS Dret_2344 NC_013223.1 2667134 2671060 D KEGG: dat:HRM2_00160 hypothetical protein; hypothetical protein 2667134..2671060 Desulfohalobium retbaense DSM 5692 8420204 YP_003199206.1 CDS Dret_2345 NC_013223.1 2671557 2672507 R PFAM: 17 kDa surface antigen; SH3 type 3 domain protein; protein of unknown function DUF1058; KEGG: ppw:PputW619_3912 SH3 type 3 domain- containing protein; 17 kDa surface antigen complement(2671557..2672507) Desulfohalobium retbaense DSM 5692 8420205 YP_003199207.1 CDS Dret_2346 NC_013223.1 2672973 2674511 R PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; KEGG: hypothetical protein; WD40 repeat, subgroup complement(2672973..2674511) Desulfohalobium retbaense DSM 5692 8420206 YP_003199208.1 CDS Dret_2347 NC_013223.1 2674626 2676680 R KEGG: mxa:MXAN_4149 response regulator FrzS; hypothetical protein complement(2674626..2676680) Desulfohalobium retbaense DSM 5692 8420207 YP_003199209.1 CDS Dret_2348 NC_013223.1 2676647 2678797 R KEGG: mucin-associated surface protein (MASP); hypothetical protein complement(2676647..2678797) Desulfohalobium retbaense DSM 5692 8420208 YP_003199210.1 CDS Dret_2349 NC_013223.1 2678808 2681639 R SMART: PDZ/DHR/GLGF domain protein; KEGG: pmy:Pmen_3046 putative membrane-associated zinc metalloprotease; PDZ/DHR/GLGF domain-containing protein complement(2678808..2681639) Desulfohalobium retbaense DSM 5692 8420209 YP_003199211.1 CDS Dret_2350 NC_013223.1 2681733 2682275 R hypothetical protein complement(2681733..2682275) Desulfohalobium retbaense DSM 5692 8420210 YP_003199212.1 CDS Dret_2351 NC_013223.1 2682734 2683210 R PFAM: heat shock protein Hsp20; KEGG: bja:blr4637 HspC2 heat shock protein; heat shock protein Hsp20 complement(2682734..2683210) Desulfohalobium retbaense DSM 5692 8420211 YP_003199213.1 CDS Dret_2352 NC_013223.1 2683797 2684504 R PFAM: Abortive infection protein; KEGG: tgr:Tgr7_3154 hypothetical protein; Abortive infection protein complement(2683797..2684504) Desulfohalobium retbaense DSM 5692 8420212 YP_003199214.1 CDS Dret_2353 NC_013223.1 2684636 2685196 R hypothetical protein complement(2684636..2685196) Desulfohalobium retbaense DSM 5692 8420213 YP_003199215.1 CDS Dret_2354 NC_013223.1 2685366 2685644 D hypothetical protein 2685366..2685644 Desulfohalobium retbaense DSM 5692 8420214 YP_003199216.1 CDS Dret_2355 NC_013223.1 2686238 2687395 D PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1647 major facilitator superfamily protein; major facilitator superfamily protein 2686238..2687395 Desulfohalobium retbaense DSM 5692 8420215 YP_003199217.1 CDS Dret_2356 NC_013223.1 2688186 2690225 D PFAM: histidine kinase HAMP region domain protein; Stage II sporulation E family protein; SMART: histidine kinase HAMP region domain protein; protein phosphatase 2C domain protein; KEGG: pau:PA14_02150 hypothetical protein; protein serine/threonine phosphatase 2688186..2690225 Desulfohalobium retbaense DSM 5692 8420216 YP_003199218.1 CDS Dret_2357 NC_013223.1 2690407 2691165 D KEGG: ppd:Ppro_1341 response regulator receiver modulated diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 2690407..2691165 Desulfohalobium retbaense DSM 5692 8420217 YP_003199219.1 CDS Dret_2358 NC_013223.1 2691155 2691700 D KEGG: dde:Dde_3046 hypothetical protein; hypothetical protein 2691155..2691700 Desulfohalobium retbaense DSM 5692 8420218 YP_003199220.1 CDS Dret_2359 NC_013223.1 2691887 2692270 D PFAM: Domain of unknown function DUF1987; KEGG: dde:Dde_3045 hypothetical protein; hypothetical protein 2691887..2692270 Desulfohalobium retbaense DSM 5692 8420219 YP_003199221.1 CDS Dret_2360 NC_013223.1 2693201 2694052 R KEGG: acp:A2cp1_0340 split soret cytochrome c precursor; split soret cytochrome c precursor complement(2693201..2694052) Desulfohalobium retbaense DSM 5692 8420220 YP_003199222.1 CDS Dret_2361 NC_013223.1 2694285 2695637 D KEGG: sat:SYN_01191 transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; SMART: AAA ATPase; PAS modulated Fis family sigma-54-specific transcriptional regulator 2694285..2695637 Desulfohalobium retbaense DSM 5692 8420221 YP_003199223.1 CDS Dret_2362 NC_013223.1 2696487 2697881 D PFAM: ATPase; DUF234 DEXX-box ATPase; KEGG: sat:SYN_01513 ATPase; ATPase 2696487..2697881 Desulfohalobium retbaense DSM 5692 8420222 YP_003199224.1 CDS Dret_2363 NC_013223.1 2697920 2698273 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sat:SYN_01508 transcriptional regulator helix turn helix; XRE family transcriptional regulator 2697920..2698273 Desulfohalobium retbaense DSM 5692 8420223 YP_003199225.1 CDS Dret_2364 NC_013223.1 2698945 2699478 R hypothetical protein complement(2698945..2699478) Desulfohalobium retbaense DSM 5692 8420224 YP_003199226.1 CDS Dret_2365 NC_013223.1 2700179 2701000 D PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_0500 ferredoxin-nitroreductase protein; nitroreductase 2700179..2701000 Desulfohalobium retbaense DSM 5692 8420225 YP_003199227.1 CDS Dret_2366 NC_013223.1 2701212 2701724 R hypothetical protein complement(2701212..2701724) Desulfohalobium retbaense DSM 5692 8420226 YP_003199228.1 CDS Dret_2367 NC_013223.1 2702121 2703467 D KEGG: asu:Asuc_1537 hypothetical protein; hypothetical protein 2702121..2703467 Desulfohalobium retbaense DSM 5692 8420227 YP_003199229.1 CDS Dret_2369 NC_013223.1 2704409 2708359 D KEGG: mca:MCA1204 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold- 3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein; ATP- binding region ATPase domain protein; multi-sensor hybrid histidine kinase 2704409..2708359 Desulfohalobium retbaense DSM 5692 8420229 YP_003199230.1 CDS Dret_2370 NC_013223.1 2708352 2709464 D PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: dma:DMR_29640 response regulator receiver protein; response regulator receiver modulated metal dependent phosphohydrolase 2708352..2709464 Desulfohalobium retbaense DSM 5692 8420230 YP_003199231.1 CDS Dret_2371 NC_013223.1 2709728 2710021 R hypothetical protein complement(2709728..2710021) Desulfohalobium retbaense DSM 5692 8420231 YP_003199232.1 CDS Dret_2372 NC_013223.1 2710179 2710760 R hypothetical protein complement(2710179..2710760) Desulfohalobium retbaense DSM 5692 8420232 YP_003199233.1 CDS Dret_2373 NC_013223.1 2710810 2712966 R PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_0094 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2710810..2712966) Desulfohalobium retbaense DSM 5692 8420233 YP_003199234.1 CDS Dret_2374 NC_013223.1 2713607 2714563 D KEGG: dat:HRM2_06360 hypothetical protein; serine/threonine protein kinase 2713607..2714563 Desulfohalobium retbaense DSM 5692 8420234 YP_003199235.1 CDS Dret_2375 NC_013223.1 2714699 2715208 D PFAM: UspA domain protein; KEGG: dma:DMR_22770 hypothetical protein; UspA domain-containing protein 2714699..2715208 Desulfohalobium retbaense DSM 5692 8420235 YP_003199236.1 CDS Dret_2376 NC_013223.1 2715395 2716921 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: cvi:CV_4302 high-affinity choline transport protein; choline/carnitine/betaine transporter complement(2715395..2716921) Desulfohalobium retbaense DSM 5692 8420236 YP_003199237.1 CDS Dret_2377 NC_013223.1 2716925 2717725 R PFAM: UspA domain protein; KEGG: lpf:lpl2309 hypothetical protein; UspA domain-containing protein complement(2716925..2717725) Desulfohalobium retbaense DSM 5692 8420237 YP_003199238.1 CDS Dret_2378 NC_013223.1 2717975 2721091 R PFAM: acriflavin resistance protein; KEGG: dat:HRM2_02370 cobalt-zinc-cadmium resistance protein CzcA-like protein; acriflavin resistance protein complement(2717975..2721091) Desulfohalobium retbaense DSM 5692 8420238 YP_003199239.1 CDS Dret_2379 NC_013223.1 2721088 2722320 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dat:HRM2_02380 putative membrane-fusion protein; RND family efflux transporter MFP subunit complement(2721088..2722320) Desulfohalobium retbaense DSM 5692 8420239 YP_003199240.1 CDS Dret_2380 NC_013223.1 2722317 2723762 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dat:HRM2_02390 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein complement(2722317..2723762) Desulfohalobium retbaense DSM 5692 8420240 YP_003199241.1 CDS Dret_2381 NC_013223.1 2724267 2724668 D PFAM: AIG2 family protein; KEGG: azo:azo2848 putative AIG2-like protein; AIG2 family protein 2724267..2724668 Desulfohalobium retbaense DSM 5692 8420241 YP_003199242.1 CDS Dret_2382 NC_013223.1 2724830 2725144 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: dal:Dalk_2029 cupin 2 conserved barrel domain protein; cupin 2 barrel domain-containing protein complement(2724830..2725144) Desulfohalobium retbaense DSM 5692 8420242 YP_003199243.1 CDS Dret_2383 NC_013223.1 2725365 2726786 R KEGG: dal:Dalk_2563 hypothetical protein; hypothetical protein complement(2725365..2726786) Desulfohalobium retbaense DSM 5692 8420243 YP_003199244.1 CDS Dret_2384 NC_013223.1 2726822 2727379 R PFAM: NapC/NirT cytochrome c domain protein; KEGG: dal:Dalk_2564 NapC/NirT cytochrome c domain protein; NapC/NirT cytochrome c domain-containing protein complement(2726822..2727379) Desulfohalobium retbaense DSM 5692 8420244 YP_003199245.1 CDS Dret_2385 NC_013223.1 2727720 2728520 R KEGG: dma:DMR_24470 hypothetical protein; hypothetical protein complement(2727720..2728520) Desulfohalobium retbaense DSM 5692 8420245 YP_003199246.1 CDS Dret_2386 NC_013223.1 2728577 2730277 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(2728577..2730277) Desulfohalobium retbaense DSM 5692 8420246 YP_003199247.1 CDS Dret_2387 NC_013223.1 2730589 2731500 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pag:PLES_42621 hypothetical protein; hypothetical protein 2730589..2731500 Desulfohalobium retbaense DSM 5692 8420247 YP_003199248.1 CDS Dret_2388 NC_013223.1 2731702 2732130 D KEGG: hypothetical protein; hypothetical protein 2731702..2732130 Desulfohalobium retbaense DSM 5692 8420248 YP_003199249.1 CDS Dret_2389 NC_013223.1 2732368 2733714 R KEGG: dma:DMR_06110 glutamine synthetase type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; glutamine synthetase, type I complement(2732368..2733714) Desulfohalobium retbaense DSM 5692 8420249 YP_003199250.1 CDS Dret_2390 NC_013223.1 2734719 2735189 D KEGG: dma:DMR_45210 putative zinc resistance- associated protein precursor; putative zinc resistance-associated protein 2734719..2735189 Desulfohalobium retbaense DSM 5692 8420250 YP_003199251.1 CDS Dret_2391 NC_013223.1 2735314 2737035 D PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; KEGG: dde:Dde_1684 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase 2735314..2737035 Desulfohalobium retbaense DSM 5692 8420251 YP_003199252.1 CDS Dret_2392 NC_013223.1 2737103 2738479 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dde:Dde_1685 two component Fis family transcriptional regulator; two component, sigma54 specific, transcriptional regulator, Fis family 2737103..2738479 Desulfohalobium retbaense DSM 5692 8420252 YP_003199253.1 CDS Dret_2393 NC_013223.1 2739216 2739857 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; Redoxin domain protein; KEGG: dde:Dde_2560 3-Cys thioredoxin peroxidase / 1- Cys peroxiredoxin; peroxiredoxin 2739216..2739857 Desulfohalobium retbaense DSM 5692 8420253 YP_003199254.1 CDS Dret_2394 NC_013223.1 2740034 2740864 R PFAM: aspartate/glutamate/uridylate kinase; KEGG: dps:DP0145 hypothetical protein; aspartate/glutamate/uridylate kinase complement(2740034..2740864) Desulfohalobium retbaense DSM 5692 8420254 YP_003199255.1 CDS Dret_2395 NC_013223.1 2740861 2741076 R KEGG: pca:Pcar_2385 hypothetical protein; hypothetical protein complement(2740861..2741076) Desulfohalobium retbaense DSM 5692 8420255 YP_003199256.1 CDS Dret_2396 NC_013223.1 2741264 2742277 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dal:Dalk_1502 ABC transporter related; ABC transporter complement(2741264..2742277) Desulfohalobium retbaense DSM 5692 8420256 YP_003199257.1 CDS Dret_2397 NC_013223.1 2742278 2742973 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_1501 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2742278..2742973) Desulfohalobium retbaense DSM 5692 8420257 YP_003199258.1 CDS Dret_2398 NC_013223.1 2743060 2743965 R KEGG: dps:DP0331 hypothetical protein; hypothetical protein complement(2743060..2743965) Desulfohalobium retbaense DSM 5692 8420258 YP_003199259.1 CDS Dret_2399 NC_013223.1 2744285 2745145 D KEGG: dvu:DVU0064 hypothetical protein; hypothetical protein 2744285..2745145 Desulfohalobium retbaense DSM 5692 8420259 YP_003199260.1 CDS Dret_2400 NC_013223.1 2745146 2745952 R PFAM: protein of unknown function DUF82; KEGG: acp:A2cp1_3352 protein of unknown function DUF82; hypothetical protein complement(2745146..2745952) Desulfohalobium retbaense DSM 5692 8420260 YP_003199261.1 CDS Dret_2401 NC_013223.1 2745972 2747219 D PFAM: peptidase M48 Ste24p; KEGG: dat:HRM2_15460 endopeptidase family protein; Ste24 endopeptidase 2745972..2747219 Desulfohalobium retbaense DSM 5692 8420261 YP_003199262.1 CDS Dret_2402 NC_013223.1 2747212 2750295 D PFAM: UvrD/REP helicase; KEGG: dde:Dde_3499 ATP-dependent DNA helicase UvrD; UvrD/REP helicase 2747212..2750295 Desulfohalobium retbaense DSM 5692 8420262 YP_003199263.1 CDS Dret_2403 NC_013223.1 2750341 2751438 D PFAM: phosphoesterase RecJ domain protein; KEGG: dvm:DvMF_1755 phosphoesterase RecJ domain protein; phosphoesterase RecJ domain-containing protein 2750341..2751438 Desulfohalobium retbaense DSM 5692 8420263 YP_003199264.1 CDS Dret_2404 NC_013223.1 2751447 2753984 D KEGG: dvm:DvMF_1713 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: DNA-directed DNA polymerase; Helix-hairpin- helix domain protein class 2; 5'-3' exonuclease; DNA polymerase I 2751447..2753984 Desulfohalobium retbaense DSM 5692 8420264 YP_003199265.1 CDS Dret_2405 NC_013223.1 2754104 2755291 D PFAM: aminotransferase class V; KEGG: dvu:DVU0494 aminotransferase, class V; class V aminotransferase 2754104..2755291 Desulfohalobium retbaense DSM 5692 8420265 YP_003199266.1 CDS Dret_2406 NC_013223.1 2755359 2755691 D PFAM: Domain of unknown function DUF1844; KEGG: dal:Dalk_3378 domain of unknown function DUF1844; hypothetical protein 2755359..2755691 Desulfohalobium retbaense DSM 5692 8420266 YP_003199267.1 CDS argC NC_013223.1 2755702 2756757 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 2755702..2756757 Desulfohalobium retbaense DSM 5692 8420267 YP_003199268.1 CDS Dret_2408 NC_013223.1 2756801 2758090 R KEGG: dma:DMR_05110 putative phenylacetate-coenzyme A ligase; phenylacetate--CoA ligase complement(2756801..2758090) Desulfohalobium retbaense DSM 5692 8420268 YP_003199269.1 CDS Dret_2409 NC_013223.1 2758163 2758936 D PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: dvm:DvMF_1037 peptidase A24A domain protein; prepilin peptidase 2758163..2758936 Desulfohalobium retbaense DSM 5692 8420269 YP_003199270.1 CDS Dret_2410 NC_013223.1 2759054 2759776 D PFAM: formate dehydrogenase subunit FdhD; KEGG: dvm:DvMF_1232 formate dehydrogenase accessory protein FdhD, putative; formate dehydrogenase subunit FdhD 2759054..2759776 Desulfohalobium retbaense DSM 5692 8420270 YP_003199271.1 CDS Dret_2411 NC_013223.1 2760423 2763410 R PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: dde:Dde_3191 phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase complement(2760423..2763410) Desulfohalobium retbaense DSM 5692 8420271 YP_003199272.1 CDS Dret_2412 NC_013223.1 2763438 2764406 R PFAM: Polyprenyl synthetase; KEGG: dma:DMR_35820 octaprenyl-diphosphate synthase; Dimethylallyltranstransferase complement(2763438..2764406) Desulfohalobium retbaense DSM 5692 8420272 YP_003199273.1 CDS Dret_2413 NC_013223.1 2764448 2765308 R PFAM: protein of unknown function DUF191; KEGG: dma:DMR_35810 hypothetical protein; hypothetical protein complement(2764448..2765308) Desulfohalobium retbaense DSM 5692 8420273 YP_003199274.1 CDS Dret_2414 NC_013223.1 2765305 2766063 R TIGRFAM: futalosine nucleosidase; PFAM: purine or other phosphorylase family 1; KEGG: dde:Dde_3188 hypothetical protein; futalosine nucleosidase complement(2765305..2766063) Desulfohalobium retbaense DSM 5692 8420274 YP_003199275.1 CDS Dret_2415 NC_013223.1 2766065 2767396 R TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; KEGG: dde:Dde_3187 UDP-glucose/GDP-mannose dehydrogenase family protein; nucleotide sugar dehydrogenase complement(2766065..2767396) Desulfohalobium retbaense DSM 5692 8420275 YP_003199276.1 CDS Dret_2416 NC_013223.1 2767488 2767691 D PFAM: Protein of unknown function DUF2065; KEGG: dma:DMR_35780 hypothetical membrane protein; hypothetical protein 2767488..2767691 Desulfohalobium retbaense DSM 5692 8420276 YP_003199277.1 CDS Dret_2417 NC_013223.1 2767784 2768536 R TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dvm:DvMF_2496 ubiquinone/menaquinone biosynthesis methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase complement(2767784..2768536) Desulfohalobium retbaense DSM 5692 8420277 YP_003199278.1 CDS Dret_2418 NC_013223.1 2768520 2768699 R KEGG: dma:DMR_35760 hypothetical protein; hypothetical protein complement(2768520..2768699) Desulfohalobium retbaense DSM 5692 8420278 YP_003199279.1 CDS Dret_2419 NC_013223.1 2768948 2769820 R KEGG: hypothetical protein; hypothetical protein complement(2768948..2769820) Desulfohalobium retbaense DSM 5692 8420279 YP_003199280.1 CDS Dret_2420 NC_013223.1 2770039 2770449 R PFAM: cytochrome c class III; KEGG: dma:DMR_02560 cytochrome c3; cytochrome c class III complement(2770039..2770449) Desulfohalobium retbaense DSM 5692 8420280 YP_003199281.1 CDS Dret_2421 NC_013223.1 2770570 2771838 R TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: dde:Dde_3180 glutamate-1-semialdehyde aminotransferase; glutamate-1-semialdehyde-2,1-aminomutase complement(2770570..2771838) Desulfohalobium retbaense DSM 5692 8420281 YP_003199282.1 CDS Dret_2422 NC_013223.1 2771983 2772468 R SMART: Transcription regulator, AsnC-type; KEGG: dma:DMR_11820 putative DNA-binding protein; putative transcriptional regulator, AsnC family complement(2771983..2772468) Desulfohalobium retbaense DSM 5692 8420282 YP_003199283.1 CDS Dret_2423 NC_013223.1 2772816 2773808 D PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; NADP oxidoreductase coenzyme F420-dependent; KEGG: dma:DMR_11830 NAD(P)H-dependent glycerol-3- phosphate dehydrogenase; glycerol-3-phosphate dehydrogenase 2772816..2773808 Desulfohalobium retbaense DSM 5692 8420283 YP_003199284.1 CDS Dret_2424 NC_013223.1 2773774 2776218 D PFAM: outer membrane efflux protein; KEGG: pca:Pcar_3003 outer membrane efflux protein; outer membrane efflux protein 2773774..2776218 Desulfohalobium retbaense DSM 5692 8420284 YP_003199285.1 CDS Dret_2425 NC_013223.1 2776272 2777840 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: tgr:Tgr7_0656 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase 2776272..2777840 Desulfohalobium retbaense DSM 5692 8420285 YP_003199286.1 CDS Dret_2426 NC_013223.1 2777837 2778934 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pca:Pcar_3002 membrane-fusion protein, component of multidrug efflux system; RND family efflux transporter MFP subunit 2777837..2778934 Desulfohalobium retbaense DSM 5692 8420286 YP_003199287.1 CDS Dret_2427 NC_013223.1 2778973 2782032 D PFAM: acriflavin resistance protein; KEGG: pca:Pcar_3001 cation-multidrug efflux pump; acriflavin resistance protein 2778973..2782032 Desulfohalobium retbaense DSM 5692 8420287 YP_003199288.1 CDS Dret_2428 NC_013223.1 2782035 2782781 D KEGG: pca:Pcar_1926 putative lipoprotein; putative lipoprotein 2782035..2782781 Desulfohalobium retbaense DSM 5692 8420288 YP_003199289.1 CDS Dret_2429 NC_013223.1 2782787 2784346 R PFAM: FAD dependent oxidoreductase; KEGG: dat:HRM2_22630 GlpA; FAD dependent oxidoreductase complement(2782787..2784346) Desulfohalobium retbaense DSM 5692 8420289 YP_003199290.1 CDS Dret_2430 NC_013223.1 2784377 2784739 R PFAM: diacylglycerol kinase; KEGG: tau:Tola_1000 diacylglycerol kinase; diacylglycerol kinase complement(2784377..2784739) Desulfohalobium retbaense DSM 5692 8420290 YP_003199291.1 CDS Dret_2431 NC_013223.1 2784790 2785341 R KEGG: dvu:DVU0400 hypothetical protein; hypothetical protein complement(2784790..2785341) Desulfohalobium retbaense DSM 5692 8420291 YP_003199292.1 CDS Dret_2432 NC_013223.1 2785642 2786928 D KEGG: dvm:DvMF_1153 phenylacetate--CoA ligase; phenylacetate--CoA ligase 2785642..2786928 Desulfohalobium retbaense DSM 5692 8420292 YP_003199293.1 CDS Dret_2433 NC_013223.1 2787022 2788344 R PFAM: Citrate transporter; Arsenical pump membrane protein; KEGG: dma:DMR_06440 arsenical pump membrane protein; citrate transporter complement(2787022..2788344) Desulfohalobium retbaense DSM 5692 8420293 YP_003199294.1 CDS Dret_2434 NC_013223.1 2788421 2788927 R PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dma:DMR_06450 hypothetical protein; hypothetical protein complement(2788421..2788927) Desulfohalobium retbaense DSM 5692 8420294 YP_003199295.1 CDS Dret_2435 NC_013223.1 2789319 2789825 R PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dma:DMR_06450 hypothetical protein; hypothetical protein complement(2789319..2789825) Desulfohalobium retbaense DSM 5692 8420295 YP_003199296.1 CDS Dret_2436 NC_013223.1 2790018 2792828 R PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; cytoplasmic chaperone TorD family protein; molydopterin dinucleotide-binding region; KEGG: dat:HRM2_41650 multi-domain fusion protein (anaerobic dehydrogenase/molybdopterin oxidoreductase/anaerobic formate hydrogen lyase 4Fe-4S complex); molybdopterin oxidoreductase complement(2790018..2792828) Desulfohalobium retbaense DSM 5692 8420296 YP_003199297.1 CDS Dret_2437 NC_013223.1 2793016 2793804 R PFAM: protein of unknown function DUF169; KEGG: dvm:DvMF_2193 protein of unknown function DUF169; hypothetical protein complement(2793016..2793804) Desulfohalobium retbaense DSM 5692 8420297 YP_003199298.1 CDS Dret_2438 NC_013223.1 2793853 2794287 R KEGG: ret:RHE_PE00114 sugar ABC transporter, permease protein; hypothetical protein complement(2793853..2794287) Desulfohalobium retbaense DSM 5692 8420298 YP_003199299.1 CDS Dret_2439 NC_013223.1 2794271 2794870 R KEGG: dat:HRM2_12100 hypothetical protein; hypothetical protein complement(2794271..2794870) Desulfohalobium retbaense DSM 5692 8420299 YP_003199300.1 CDS Dret_2440 NC_013223.1 2795013 2796716 R PFAM: protein of unknown function DUF81; KEGG: dat:HRM2_12110 hypothetical protein; hypothetical protein complement(2795013..2796716) Desulfohalobium retbaense DSM 5692 8420300 YP_003199301.1 CDS Dret_2441 NC_013223.1 2797571 2798932 D PFAM: outer membrane efflux protein; KEGG: dvl:Dvul_0283 outer membrane efflux protein; outer membrane efflux protein 2797571..2798932 Desulfohalobium retbaense DSM 5692 8420301 YP_003199302.1 CDS Dret_2442 NC_013223.1 2799006 2800958 D KEGG: dma:DMR_02070 putative response regulator receiver protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2799006..2800958 Desulfohalobium retbaense DSM 5692 8420302 YP_003199303.1 CDS Dret_2443 NC_013223.1 2800985 2801902 D PFAM: Auxin Efflux Carrier; KEGG: avn:Avin_49900 permease; auxin efflux carrier family protein 2800985..2801902 Desulfohalobium retbaense DSM 5692 8420303 YP_003199304.1 CDS Dret_2444 NC_013223.1 2802965 2803594 D KEGG: lhk:LHK_00160 hypothetical protein; hypothetical protein 2802965..2803594 Desulfohalobium retbaense DSM 5692 8420304 YP_003199305.1 CDS Dret_2445 NC_013223.1 2803624 2804925 D KEGG: smt:Smal_2090 hypothetical protein; hypothetical protein 2803624..2804925 Desulfohalobium retbaense DSM 5692 8420305 YP_003199306.1 CDS Dret_2446 NC_013223.1 2805010 2805717 D PFAM: peptidase C39 bacteriocin processing; KEGG: pag:PLES_33701 putative double-glycine peptidase; peptidase C39 bacteriocin processing 2805010..2805717 Desulfohalobium retbaense DSM 5692 8420306 YP_003199307.1 CDS Dret_2447 NC_013223.1 2805742 2806221 D hypothetical protein 2805742..2806221 Desulfohalobium retbaense DSM 5692 8420307 YP_003199308.1 CDS Dret_2448 NC_013223.1 2806488 2807957 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: geo:Geob_1785 sigma54 specific transcriptional regulator, Fis family; Fis family sigma-54 specific transcriptional regulator 2806488..2807957 Desulfohalobium retbaense DSM 5692 8420308 YP_003199309.1 CDS Dret_2449 NC_013223.1 2808127 2808645 D PFAM: outer membrane chaperone Skp (OmpH); KEGG: dat:HRM2_22420 outer membrane protein (putative Skp protein); outer membrane chaperone Skp 2808127..2808645 Desulfohalobium retbaense DSM 5692 8420309 YP_003199310.1 CDS Dret_2450 NC_013223.1 2808685 2809674 D KEGG: gur:Gura_1157 hypothetical protein; hypothetical protein 2808685..2809674 Desulfohalobium retbaense DSM 5692 8420310 YP_003199311.1 CDS Dret_2451 NC_013223.1 2810442 2811383 D TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: dde:Dde_3505 riboflavin kinase / FMN adenylyltransferase; riboflavin biosynthesis protein RibF 2810442..2811383 Desulfohalobium retbaense DSM 5692 8420313 YP_003199312.1 CDS Dret_2452 NC_013223.1 2811515 2813326 D PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; KEGG: dde:Dde_3504 chloride channel family protein; Cl- channel voltage-gated family protein 2811515..2813326 Desulfohalobium retbaense DSM 5692 8420314 YP_003199313.1 CDS Dret_2453 NC_013223.1 2813334 2815151 D PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dat:HRM2_22170 EriC2; Cl- channel voltage-gated family protein 2813334..2815151 Desulfohalobium retbaense DSM 5692 8420315 YP_003199314.1 CDS Dret_2454 NC_013223.1 2815229 2816014 R PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; KEGG: dma:DMR_06140 putative aldolase; Fructose-bisphosphate aldolase complement(2815229..2816014) Desulfohalobium retbaense DSM 5692 8420316 YP_003199315.1 CDS Dret_2455 NC_013223.1 2816138 2817403 R PFAM: Fmu (Sun) domain protein; KEGG: dde:Dde_0122 NOL1/NOP2/sun family protein; Fmu (Sun) domain-containing protein complement(2816138..2817403) Desulfohalobium retbaense DSM 5692 8420317 YP_003199316.1 CDS Dret_2456 NC_013223.1 2817806 2818819 D PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dde:Dde_0634 extracellular solute-binding protein; Extracellular solute-binding protein 2817806..2818819 Desulfohalobium retbaense DSM 5692 8420318 YP_003199317.1 CDS Dret_2457 NC_013223.1 2818825 2819295 D KEGG: dde:Dde_0635 tripartite ATP-independent periplasmic transporters, DctQ component, putative; tripartite ATP-independent periplasmic transporters, DctQ component 2818825..2819295 Desulfohalobium retbaense DSM 5692 8420319 YP_003199318.1 CDS Dret_2458 NC_013223.1 2819295 2820593 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dde:Dde_0636 TRAP dicarboxylate transporter- DctM subunit; TRAP dicarboxylate transporter subunit DctM 2819295..2820593 Desulfohalobium retbaense DSM 5692 8420320 YP_003199319.1 CDS Dret_2459 NC_013223.1 2820626 2821525 D PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: dma:DMR_38980 pseudouridine synthase; pseudouridine synthase 2820626..2821525 Desulfohalobium retbaense DSM 5692 8420321 YP_003199320.1 CDS Dret_2460 NC_013223.1 2821731 2822543 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: dvm:DvMF_2599 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein TIM barrel complement(2821731..2822543) Desulfohalobium retbaense DSM 5692 8420322 YP_003199321.1 CDS Dret_2461 NC_013223.1 2822870 2823784 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dvl:Dvul_0424 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein complement(2822870..2823784) Desulfohalobium retbaense DSM 5692 8420323 YP_003199322.1 CDS Dret_2462 NC_013223.1 2823760 2824368 R KEGG: sat:SYN_00425 hypothetical protein; hypothetical protein complement(2823760..2824368) Desulfohalobium retbaense DSM 5692 8420324 YP_003199323.1 CDS Dret_2463 NC_013223.1 2824365 2824931 R KEGG: dvl:Dvul_0425 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase complement(2824365..2824931) Desulfohalobium retbaense DSM 5692 8420325 YP_003199324.1 CDS Dret_2464 NC_013223.1 2825085 2826401 R TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase-like; KEGG: dvm:DvMF_1468 adenylosuccinate lyase; adenylosuccinate lyase complement(2825085..2826401) Desulfohalobium retbaense DSM 5692 8420326 YP_003199325.1 CDS Dret_2465 NC_013223.1 2826489 2826809 R TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dde:Dde_3010 hypothetical protein; FmdB family regulatory protein complement(2826489..2826809) Desulfohalobium retbaense DSM 5692 8420327 YP_003199326.1 CDS Dret_2466 NC_013223.1 2826886 2827002 R KEGG: dvm:DvMF_1466 hypothetical protein; hypothetical protein complement(2826886..2827002) Desulfohalobium retbaense DSM 5692 8420328 YP_003199327.1 CDS Dret_2467 NC_013223.1 2827162 2828277 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DP1667 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin complement(2827162..2828277) Desulfohalobium retbaense DSM 5692 8420329 YP_003199328.1 CDS Dret_2468 NC_013223.1 2828274 2829020 R KEGG: dvm:DvMF_1465 hypothetical protein; hypothetical protein complement(2828274..2829020) Desulfohalobium retbaense DSM 5692 8420330 YP_003199329.1 CDS Dret_2469 NC_013223.1 2829061 2830227 R PFAM: protein of unknown function DUF39; KEGG: dvm:DvMF_1464 protein of unknown function DUF39; hypothetical protein complement(2829061..2830227) Desulfohalobium retbaense DSM 5692 8420331 YP_003199330.1 CDS Dret_2470 NC_013223.1 2830406 2831761 D PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; KEGG: dvm:DvMF_2081 chromosomal replication initiator protein DnaA; chromosomal replication initiator DnaA domain-containing protein 2830406..2831761 Desulfohalobium retbaense DSM 5692 8420332 YP_003199331.1 CDS Dret_2471 NC_013223.1 2831894 2833075 D KEGG: dde:Dde_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain; DNA polymerase III subunit beta 2831894..2833075 Desulfohalobium retbaense DSM 5692 8420333 YP_003199332.1 CDS Dret_2472 NC_013223.1 2833079 2835463 D KEGG: dde:Dde_0003 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA gyrase subunit B 2833079..2835463 Desulfohalobium retbaense DSM 5692 8420334 YP_003199333.1 CDS Dret_2473 NC_013223.1 2835518 2837947 D KEGG: dde:Dde_0004 DNA gyrase subunit A; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A; DNA gyrase subunit A 2835518..2837947 Desulfohalobium retbaense DSM 5692 8420335 YP_003199334.1 CDS Dret_2474 NC_013223.1 2838212 2839021 R TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_0264 ferredoxin; RnfABCDGE type electron transport complex subunit B complement(2838212..2839021) Desulfohalobium retbaense DSM 5692 8420336 YP_003199335.1 CDS Dret_2475 NC_013223.1 2839183 2840112 D KEGG: dat:HRM2_32230 hypothetical protein; hypothetical protein 2839183..2840112 Desulfohalobium retbaense DSM 5692 8420337 YP_003199336.1 CDS Dret_2476 NC_013223.1 2840324 2840677 D KEGG: vcj:VCD_000689 GlpM protein; GlpM protein 2840324..2840677 Desulfohalobium retbaense DSM 5692 8420338 YP_003199337.1 CDS Dret_2477 NC_013223.1 2840739 2841440 R PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: dde:Dde_0628 DNA polymerase III, epsilon subunit; Exonuclease RNase T and DNA polymerase III complement(2840739..2841440) Desulfohalobium retbaense DSM 5692 8420339 YP_003199338.1 CDS Dret_2478 NC_013223.1 2841524 2843452 R PFAM: protein of unknown function DUF294 nucleotidyltransferase putative; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; cyclic nucleotide-binding; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dde:Dde_0629 cyclic nucleotide-binding domain- containing protein; putative CBS domain and cyclic nucleotide- regulated nucleotidyltransferase complement(2841524..2843452) Desulfohalobium retbaense DSM 5692 8420340 YP_003199339.1 CDS Dret_2479 NC_013223.1 2843510 2845291 R TIGRFAM: probable sodium symporter protein; PFAM: Na+/solute symporter; KEGG: dde:Dde_0630 sodium:solute symporter family protein; putative sodium symporter protein complement(2843510..2845291) Desulfohalobium retbaense DSM 5692 8420341 YP_003199340.1 CDS Dret_2480 NC_013223.1 2845378 2845626 R TIGRFAM: probable solute symporter protein; KEGG: hch:HCH_05071 hypothetical protein; putative solute symporter protein complement(2845378..2845626) Desulfohalobium retbaense DSM 5692 8420342 YP_003199341.1 CDS Dret_2481 NC_013223.1 2845926 2847788 R PFAM: AMP-dependent synthetase and ligase; KEGG: dvl:Dvul_2222 acetate--CoA ligase; AMP-dependent synthetase and ligase complement(2845926..2847788) Desulfohalobium retbaense DSM 5692 8420343 YP_003199342.1 CDS Dret_2482 NC_013223.1 2847866 2848732 R PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: dma:DMR_06670 putative response regulator receiver protein; LytTR family two component transcriptional regulator complement(2847866..2848732) Desulfohalobium retbaense DSM 5692 8420344 YP_003199343.1 CDS Dret_2483 NC_013223.1 2848929 2849297 D KEGG: tbd:Tbd_1218 transmembrane protein; transmembrane protein 2848929..2849297 Desulfohalobium retbaense DSM 5692 8420345 YP_003199344.1 CDS Dret_2484 NC_013223.1 2849421 2849813 D PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: aeh:Mlg_1512 rhodanese domain-containing protein; rhodanese domain-containing protein 2849421..2849813 Desulfohalobium retbaense DSM 5692 8420346 YP_003199345.1 CDS Dret_2485 NC_013223.1 2849810 2850424 D PFAM: protein of unknown function UPF0029; KEGG: dvm:DvMF_3177 protein of unknown function UPF0029; hypothetical protein 2849810..2850424 Desulfohalobium retbaense DSM 5692 8420347 YP_003199346.1 CDS Dret_2486 NC_013223.1 2850536 2851444 D TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase domain protein; KEGG: dma:DMR_05560 putative 6-phosphogluconate dehydrogenase; 6-phosphogluconate dehydrogenase 2850536..2851444 Desulfohalobium retbaense DSM 5692 8420348 YP_003199347.1 CDS Dret_2487 NC_013223.1 2851486 2853018 D KEGG: dma:DMR_05550 glucose-6-phosphate 1- dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 2851486..2853018 Desulfohalobium retbaense DSM 5692 8420349 YP_003199348.1 CDS Dret_2488 NC_013223.1 2853180 2853977 D TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: gme:Gmet_2618 6-phosphogluconolactonase; 6-phosphogluconolactonase 2853180..2853977 Desulfohalobium retbaense DSM 5692 8420350 YP_003199349.1 CDS Dret_2489 NC_013223.1 2854094 2854264 D KEGG: dvl:Dvul_2023 hypothetical protein; hypothetical protein 2854094..2854264 Desulfohalobium retbaense DSM 5692 8420351 YP_003199350.1 CDS Dret_2490 NC_013223.1 2854592 2855413 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dvl:Dvul_2022 extracellular solute-binding protein; family 3 extracellular solute-binding protein 2854592..2855413 Desulfohalobium retbaense DSM 5692 8420352 YP_003199351.1 CDS Dret_2491 NC_013223.1 2855672 2856679 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_2021 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 2855672..2856679 Desulfohalobium retbaense DSM 5692 8420353 YP_003199352.1 CDS Dret_2492 NC_013223.1 2856685 2857416 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvm:DvMF_1342 ABC transporter related; ABC transporter 2856685..2857416 Desulfohalobium retbaense DSM 5692 8420354 YP_003199353.1 CDS Dret_2493 NC_013223.1 2857432 2857734 D PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: dde:Dde_0194 hypothetical protein; stress responsive alpha-beta barrel domain-containing protein 2857432..2857734 Desulfohalobium retbaense DSM 5692 8420355 YP_003199354.1 CDS Dret_2494 NC_013223.1 2858097 2859752 D PFAM: phosphoglucose isomerase (PGI); KEGG: tgr:Tgr7_0871 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 2858097..2859752 Desulfohalobium retbaense DSM 5692 8420356 YP_003199355.1 CDS Dret_2495 NC_013223.1 2859770 2860534 R PFAM: Silent information regulator protein Sir2; KEGG: dma:DMR_13880 NAD-dependent deacetylase; silent information regulator protein Sir2 complement(2859770..2860534) Desulfohalobium retbaense DSM 5692 8420357 YP_003199356.1 CDS Dret_2496 NC_013223.1 2860721 2861221 D KEGG: dal:Dalk_4409 putative lipoprotein; putative lipoprotein 2860721..2861221 Desulfohalobium retbaense DSM 5692 8420358 YP_003199357.1 CDS Dret_2497 NC_013223.1 2861248 2862465 D KEGG: dvu:DVU3353 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase 2861248..2862465 Desulfohalobium retbaense DSM 5692 8420359 YP_003199358.1 CDS Dret_2498 NC_013223.1 2862447 2863046 D KEGG: dvl:Dvul_0040 hypothetical protein; hypothetical protein 2862447..2863046 Desulfohalobium retbaense DSM 5692 8420360 YP_003199359.1 CDS Dret_2499 NC_013223.1 2863156 2864169 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4- dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: dvl:Dvul_0038 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2863156..2864169 Desulfohalobium retbaense DSM 5692 8420361 YP_003199360.1 CDS Dret_2501 NC_013224.1 661 888 D KEGG: pna:Pnap_4979 hypothetical protein; hypothetical protein 661..888 Desulfohalobium retbaense DSM 5692 8420410 YP_003199361.1 CDS Dret_2502 NC_013224.1 930 1361 R hypothetical protein complement(930..1361) Desulfohalobium retbaense DSM 5692 8420364 YP_003199362.1 CDS Dret_2503 NC_013224.1 1500 1853 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sat:SYN_01508 transcriptional regulator helix turn helix; XRE family transcriptional regulator complement(1500..1853) Desulfohalobium retbaense DSM 5692 8420365 YP_003199363.1 CDS Dret_2504 NC_013224.1 1822 2100 R KEGG: sat:SYN_03526 putative cytoplasmic protein; putative cytoplasmic protein complement(1822..2100) Desulfohalobium retbaense DSM 5692 8420366 YP_003199364.1 CDS Dret_2505 NC_013224.1 2420 2821 D hypothetical protein 2420..2821 Desulfohalobium retbaense DSM 5692 8420367 YP_003199365.1 CDS Dret_2506 NC_013224.1 2835 3653 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dma:DMR_p2_00010 putative chromosome partitioning protein ParA; Cobyrinic acid ac-diamide synthase 2835..3653 Desulfohalobium retbaense DSM 5692 8420368 YP_003199366.1 CDS Dret_2507 NC_013224.1 3657 5123 D KEGG: dma:DMR_p1_00020 hypothetical protein; hypothetical protein 3657..5123 Desulfohalobium retbaense DSM 5692 8420369 YP_003199367.1 CDS Dret_2509 NC_013224.1 6547 6786 D hypothetical protein 6547..6786 Desulfohalobium retbaense DSM 5692 8420411 YP_003199368.1 CDS Dret_2510 NC_013224.1 6987 7610 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pna:Pnap_4980 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 6987..7610 Desulfohalobium retbaense DSM 5692 8420371 YP_003199369.1 CDS Dret_2511 NC_013224.1 7620 7847 D KEGG: pna:Pnap_4979 hypothetical protein; hypothetical protein 7620..7847 Desulfohalobium retbaense DSM 5692 8420372 YP_003199370.1 CDS Dret_2512 NC_013224.1 8925 9404 D hypothetical protein 8925..9404 Desulfohalobium retbaense DSM 5692 8420373 YP_003199371.1 CDS Dret_2513 NC_013224.1 9533 10174 D KEGG: conserved hypothetical protein; hypothetical protein 9533..10174 Desulfohalobium retbaense DSM 5692 8420374 YP_003199372.1 CDS Dret_2514 NC_013224.1 10683 10805 D hypothetical protein 10683..10805 Desulfohalobium retbaense DSM 5692 8420375 YP_003199373.1 CDS Dret_2515 NC_013224.1 10786 11451 D PFAM: nuclease (SNase domain protein); Excalibur domain protein; SMART: nuclease (SNase domain protein); KEGG: dma:DMR_41750 putative nuclease; nuclease (SNase domain protein) 10786..11451 Desulfohalobium retbaense DSM 5692 8420376 YP_003199374.1 CDS Dret_2516 NC_013224.1 11423 11635 D hypothetical protein 11423..11635 Desulfohalobium retbaense DSM 5692 8420377 YP_003199375.1 CDS Dret_2517 NC_013224.1 11686 12366 D KEGG: conserved hypothetical protein; hypothetical protein 11686..12366 Desulfohalobium retbaense DSM 5692 8420378 YP_003199376.1 CDS Dret_2518 NC_013224.1 12631 12978 D hypothetical protein 12631..12978 Desulfohalobium retbaense DSM 5692 8420379 YP_003199377.1 CDS Dret_2519 NC_013224.1 13024 13407 D KEGG: dma:DMR_36590 putative transposase; hypothetical protein 13024..13407 Desulfohalobium retbaense DSM 5692 8420380 YP_003199378.1 CDS Dret_2520 NC_013224.1 13404 14297 D PFAM: Integrase catalytic region; KEGG: dma:DMR_40700 putative transposase orfB; Integrase catalytic region 13404..14297 Desulfohalobium retbaense DSM 5692 8420381 YP_003199379.1 CDS Dret_2521 NC_013224.1 14311 15426 D KEGG: dat:HRM2_19930 hypothetical protein; hypothetical protein 14311..15426 Desulfohalobium retbaense DSM 5692 8420382 YP_003199380.1 CDS Dret_2522 NC_013224.1 15496 16902 D KEGG: hps:HPSH_02375 type II DNA modification enzyme (methyltransferase); TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; helix- turn-helix domain protein; SMART: helix-turn-helix domain protein; XRE family transcriptional regulator 15496..16902 Desulfohalobium retbaense DSM 5692 8420383 YP_003199381.1 CDS Dret_2523 NC_013224.1 16873 17844 R hypothetical protein complement(16873..17844) Desulfohalobium retbaense DSM 5692 8420384 YP_003199382.1 CDS Dret_2524 NC_013224.1 17825 18055 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: slo:Shew_3490 XRE family transcriptional regulator; XRE family transcriptional regulator complement(17825..18055) Desulfohalobium retbaense DSM 5692 8420385 YP_003199383.1 CDS Dret_2527 NC_013224.1 19838 20239 D hypothetical protein 19838..20239 Desulfohalobium retbaense DSM 5692 8420413 YP_003199384.1 CDS Dret_2528 NC_013224.1 20229 20822 D PFAM: Excinuclease ABC C subunit domain protein; KEGG: bgl:bglu_1g23800 hypothetical protein; excinuclease ABC subunit C 20229..20822 Desulfohalobium retbaense DSM 5692 8420387 YP_003199385.1 CDS Dret_2529 NC_013224.1 20925 21581 R PFAM: integrase family protein; KEGG: sfu:Sfum_2367 phage integrase family protein; integrase family protein complement(20925..21581) Desulfohalobium retbaense DSM 5692 8420388 YP_003199386.1 CDS Dret_2530 NC_013224.1 22822 23283 D hypothetical protein 22822..23283 Desulfohalobium retbaense DSM 5692 8420389 YP_003199387.1 CDS Dret_2531 NC_013224.1 23319 23747 D hypothetical protein 23319..23747 Desulfohalobium retbaense DSM 5692 8420390 YP_003199388.1 CDS Dret_2532 NC_013224.1 23849 24571 D KEGG: hypothetical protein; hypothetical protein 23849..24571 Desulfohalobium retbaense DSM 5692 8420391 YP_003199389.1 CDS Dret_2533 NC_013224.1 25239 25475 D hypothetical protein 25239..25475 Desulfohalobium retbaense DSM 5692 8420392 YP_003199390.1 CDS Dret_2535 NC_013224.1 27776 28258 D KEGG: ppr:PBPRA2370 putative transposase; putative transposase 27776..28258 Desulfohalobium retbaense DSM 5692 8420414 YP_003199391.1 CDS Dret_2536 NC_013224.1 28324 29301 D PFAM: Integrase catalytic region; KEGG: ppr:PBPRA1704 putative transposase; Integrase catalytic region 28324..29301 Desulfohalobium retbaense DSM 5692 8420394 YP_003199392.1 CDS Dret_2537 NC_013224.1 30203 30607 D PFAM: ROSMUCR transcriptional regulator; KEGG: dde:Dde_0303 MucR family transcriptional regulator; transcriptional regulator, MucR family 30203..30607 Desulfohalobium retbaense DSM 5692 8420395 YP_003199393.1 CDS Dret_2539 NC_013224.1 30965 32182 R PFAM: protein of unknown function DUF262; KEGG: sbl:Sbal_3373 hypothetical protein; hypothetical protein complement(30965..32182) Desulfohalobium retbaense DSM 5692 8420415 YP_003199394.1 CDS Dret_2540 NC_013224.1 32807 32935 D hypothetical protein 32807..32935 Desulfohalobium retbaense DSM 5692 8420397 YP_003199395.1 CDS Dret_2541 NC_013224.1 33990 34469 R hypothetical protein complement(33990..34469) Desulfohalobium retbaense DSM 5692 8420398 YP_003199396.1 CDS Dret_2542 NC_013224.1 35091 35288 R hypothetical protein complement(35091..35288) Desulfohalobium retbaense DSM 5692 8420399 YP_003199397.1 CDS Dret_2543 NC_013224.1 35641 35877 D hypothetical protein 35641..35877 Desulfohalobium retbaense DSM 5692 8420400 YP_003199398.1 CDS Dret_2544 NC_013224.1 35877 39185 D KEGG: dma:DMR_36280 hypothetical protein; hypothetical protein 35877..39185 Desulfohalobium retbaense DSM 5692 8420401 YP_003199399.1 CDS Dret_2545 NC_013224.1 40214 40417 D hypothetical protein 40214..40417 Desulfohalobium retbaense DSM 5692 8420402 YP_003199400.1 CDS Dret_2546 NC_013224.1 40444 41844 D KEGG: dma:DMR_14600 hypothetical protein; hypothetical protein 40444..41844 Desulfohalobium retbaense DSM 5692 8420403 YP_003199401.1 CDS Dret_2547 NC_013224.1 41841 42299 D hypothetical protein 41841..42299 Desulfohalobium retbaense DSM 5692 8420404 YP_003199402.1 CDS Dret_2548 NC_013224.1 42389 43027 D PFAM: metallophosphoesterase; KEGG: reu:Reut_C6150 metallophosphoesterase; metallophosphoesterase 42389..43027 Desulfohalobium retbaense DSM 5692 8420405 YP_003199403.1 CDS Dret_2549 NC_013224.1 43139 43897 D KEGG: xcc:XCC4191 phage-related regulatory protein CII; ATPase involved in chromosome partitioning-like protein 43139..43897 Desulfohalobium retbaense DSM 5692 8420406 YP_003199404.1 CDS Dret_2550 NC_013224.1 43922 44275 D hypothetical protein 43922..44275 Desulfohalobium retbaense DSM 5692 8420407 YP_003199405.1 CDS Dret_2551 NC_013224.1 44265 44822 R hypothetical protein complement(44265..44822) Desulfohalobium retbaense DSM 5692 8420408 YP_003199406.1 CDS Dret_2552 NC_013224.1 44877 45173 D hypothetical protein 44877..45173 Desulfohalobium retbaense DSM 5692 8420409 Dret_R0001 tRNA Dret_R0001 NC_013223.1 56925 57000 D tRNA-Val 56925..57000 Desulfohalobium retbaense DSM 5692 8417845 Dret_R0002 tRNA Dret_R0002 NC_013223.1 80245 80320 R tRNA-Ala complement(80245..80320) Desulfohalobium retbaense DSM 5692 8417863 Dret_R0003 tRNA Dret_R0003 NC_013223.1 423484 423560 D tRNA-Pro 423484..423560 Desulfohalobium retbaense DSM 5692 8418145 Dret_R0004 tRNA Dret_R0004 NC_013223.1 550808 550884 D tRNA-Val 550808..550884 Desulfohalobium retbaense DSM 5692 8418255 Dret_R0005 tRNA Dret_R0005 NC_013223.1 605194 605269 R tRNA-Gly complement(605194..605269) Desulfohalobium retbaense DSM 5692 8418305 Dret_R0006 tRNA Dret_R0006 NC_013223.1 619264 619347 D tRNA-Leu 619264..619347 Desulfohalobium retbaense DSM 5692 8418317 Dret_R0008 tRNA Dret_R0008 NC_013223.1 651526 651601 R tRNA-Met complement(651526..651601) Desulfohalobium retbaense DSM 5692 8418351 Dret_R0009 tRNA Dret_R0009 NC_013223.1 660714 660790 R tRNA-Arg complement(660714..660790) Desulfohalobium retbaense DSM 5692 8418359 Dret_R0010 tRNA Dret_R0010 NC_013223.1 665464 665540 R tRNA-Arg complement(665464..665540) Desulfohalobium retbaense DSM 5692 8418365 Dret_R0011 tRNA Dret_R0011 NC_013223.1 805428 805516 R tRNA-Leu complement(805428..805516) Desulfohalobium retbaense DSM 5692 8418487 Dret_R0012 tRNA Dret_R0012 NC_013223.1 862938 863014 R tRNA-Pro complement(862938..863014) Desulfohalobium retbaense DSM 5692 8418544 Dret_R0013 tRNA Dret_R0013 NC_013223.1 896683 896759 R tRNA-Arg complement(896683..896759) Desulfohalobium retbaense DSM 5692 8418573 Dret_R0014 tRNA Dret_R0014 NC_013223.1 903201 903276 R tRNA-His complement(903201..903276) Desulfohalobium retbaense DSM 5692 8418578 Dret_R0015 tRNA Dret_R0015 NC_013223.1 927152 927228 D tRNA-Arg 927152..927228 Desulfohalobium retbaense DSM 5692 8418596 Dret_R0017 tRNA Dret_R0017 NC_013223.1 995818 995892 D tRNA-Gln 995818..995892 Desulfohalobium retbaense DSM 5692 8418657 Dret_R0018 tRNA Dret_R0018 NC_013223.1 1050129 1050206 R tRNA-Pro complement(1050129..1050206) Desulfohalobium retbaense DSM 5692 8418706 Dret_R0019 tRNA Dret_R0019 NC_013223.1 1138318 1138394 R tRNA-Glu complement(1138318..1138394) Desulfohalobium retbaense DSM 5692 8418785 Dret_R0020 tRNA Dret_R0020 NC_013223.1 1138407 1138482 R tRNA-Lys complement(1138407..1138482) Desulfohalobium retbaense DSM 5692 8418786 Dret_R0021 tRNA Dret_R0021 NC_013223.1 1183116 1183191 D tRNA-Lys 1183116..1183191 Desulfohalobium retbaense DSM 5692 8418831 Dret_R0022 tRNA Dret_R0022 NC_013223.1 1235885 1235971 R tRNA-Leu complement(1235885..1235971) Desulfohalobium retbaense DSM 5692 8418868 Dret_R0023 tRNA Dret_R0023 NC_013223.1 1241968 1242044 D tRNA-Met 1241968..1242044 Desulfohalobium retbaense DSM 5692 8418876 Dret_R0025 tRNA Dret_R0025 NC_013223.1 1303130 1303222 R tRNA-Ser complement(1303130..1303222) Desulfohalobium retbaense DSM 5692 8418937 Dret_R0026 tRNA Dret_R0026 NC_013223.1 1342748 1342823 D tRNA-Thr 1342748..1342823 Desulfohalobium retbaense DSM 5692 8418973 Dret_R0027 tRNA Dret_R0027 NC_013223.1 1510002 1510078 R tRNA-Met complement(1510002..1510078) Desulfohalobium retbaense DSM 5692 8419116 Dret_R0028 tRNA Dret_R0028 NC_013223.1 1792131 1792216 R tRNA-Leu complement(1792131..1792216) Desulfohalobium retbaense DSM 5692 8419377 Dret_R0029 tRNA Dret_R0029 NC_013223.1 1856915 1857009 D tRNA-Ser 1856915..1857009 Desulfohalobium retbaense DSM 5692 8419440 Dret_R0032 tRNA Dret_R0032 NC_013223.1 1976547 1976622 R tRNA-Ala complement(1976547..1976622) Desulfohalobium retbaense DSM 5692 8419552 Dret_R0033 tRNA Dret_R0033 NC_013223.1 1976630 1976708 R tRNA-Ile complement(1976630..1976708) Desulfohalobium retbaense DSM 5692 8419553 Dret_R0035 tRNA Dret_R0035 NC_013223.1 1991273 1991362 D tRNA-Sec 1991273..1991362 Desulfohalobium retbaense DSM 5692 8419564 Dret_R0036 tRNA Dret_R0036 NC_013223.1 2000582 2000656 D tRNA-Gly 2000582..2000656 Desulfohalobium retbaense DSM 5692 8419574 Dret_R0037 tRNA Dret_R0037 NC_013223.1 2000664 2000738 D tRNA-Cys 2000664..2000738 Desulfohalobium retbaense DSM 5692 8419575 Dret_R0038 tRNA Dret_R0038 NC_013223.1 2000748 2000822 D tRNA-Gly 2000748..2000822 Desulfohalobium retbaense DSM 5692 8419576 Dret_R0039 tRNA Dret_R0039 NC_013223.1 2012324 2012399 D tRNA-Ala 2012324..2012399 Desulfohalobium retbaense DSM 5692 8419590 Dret_R0040 tRNA Dret_R0040 NC_013223.1 2132544 2132619 D tRNA-Val 2132544..2132619 Desulfohalobium retbaense DSM 5692 8419700 Dret_R0041 tRNA Dret_R0041 NC_013223.1 2132635 2132711 D tRNA-Asp 2132635..2132711 Desulfohalobium retbaense DSM 5692 8419701 Dret_R0042 tRNA Dret_R0042 NC_013223.1 2207345 2207436 R tRNA-Ser complement(2207345..2207436) Desulfohalobium retbaense DSM 5692 8419770 Dret_R0043 tRNA Dret_R0043 NC_013223.1 2209072 2209164 R tRNA-Ser complement(2209072..2209164) Desulfohalobium retbaense DSM 5692 8419772 Dret_R0044 tRNA Dret_R0044 NC_013223.1 2369108 2369184 R tRNA-Trp complement(2369108..2369184) Desulfohalobium retbaense DSM 5692 8419924 Dret_R0045 tRNA Dret_R0045 NC_013223.1 2370630 2370705 R tRNA-Thr complement(2370630..2370705) Desulfohalobium retbaense DSM 5692 8419927 Dret_R0046 tRNA Dret_R0046 NC_013223.1 2370723 2370799 R tRNA-Gly complement(2370723..2370799) Desulfohalobium retbaense DSM 5692 8419928 Dret_R0047 tRNA Dret_R0047 NC_013223.1 2370850 2370935 R tRNA-Tyr complement(2370850..2370935) Desulfohalobium retbaense DSM 5692 8419929 Dret_R0048 tRNA Dret_R0048 NC_013223.1 2370951 2371026 R tRNA-Thr complement(2370951..2371026) Desulfohalobium retbaense DSM 5692 8419930 Dret_R0049 tRNA Dret_R0049 NC_013223.1 2442768 2442844 D tRNA-Met 2442768..2442844 Desulfohalobium retbaense DSM 5692 8419996 Dret_R0052 tRNA Dret_R0052 NC_013223.1 2480679 2480754 R tRNA-Ala complement(2480679..2480754) Desulfohalobium retbaense DSM 5692 8420032 Dret_R0053 tRNA Dret_R0053 NC_013223.1 2480762 2480840 R tRNA-Ile complement(2480762..2480840) Desulfohalobium retbaense DSM 5692 8420033 Dret_R0056 tRNA Dret_R0056 NC_013223.1 2538947 2539022 D tRNA-Asn 2538947..2539022 Desulfohalobium retbaense DSM 5692 8420092 Dret_R0057 tRNA Dret_R0057 NC_013223.1 2617678 2617751 D tRNA-Gln 2617678..2617751 Desulfohalobium retbaense DSM 5692 8420163 Dret_R0058 tRNA Dret_R0058 NC_013223.1 2617765 2617842 D tRNA-Glu 2617765..2617842 Desulfohalobium retbaense DSM 5692 8420164 Dret_R0059 tRNA Dret_R0059 NC_013223.1 2809872 2809947 R tRNA-Phe complement(2809872..2809947) Desulfohalobium retbaense DSM 5692 8420311 Dret_R0060 tRNA Dret_R0060 NC_013223.1 2809980 2810066 R tRNA-Leu complement(2809980..2810066) Desulfohalobium retbaense DSM 5692 8420312 Dret_R0030 rRNA Dret_R0030 NC_013223.1 1973347 1973460 R 5S ribosomal RNA complement(1973347..1973460) Desulfohalobium retbaense DSM 5692 8419550 Dret_R0031 rRNA Dret_R0031 NC_013223.1 1973502 1976440 R 23S ribosomal RNA complement(1973502..1976440) Desulfohalobium retbaense DSM 5692 8419551 Dret_R0034 rRNA Dret_R0034 NC_013223.1 1976777 1978319 R 16S ribosomal RNA complement(1976777..1978319) Desulfohalobium retbaense DSM 5692 8419554 Dret_R0050 rRNA Dret_R0050 NC_013223.1 2477479 2477592 R 5S ribosomal RNA complement(2477479..2477592) Desulfohalobium retbaense DSM 5692 8420030 Dret_R0051 rRNA Dret_R0051 NC_013223.1 2477634 2480572 R 23S ribosomal RNA complement(2477634..2480572) Desulfohalobium retbaense DSM 5692 8420031 Dret_R0054 rRNA Dret_R0054 NC_013223.1 2480909 2482451 R 16S ribosomal RNA complement(2480909..2482451) Desulfohalobium retbaense DSM 5692 8420034