-- dump date 20140619_063055 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_003196881.1 258404139 8420362 31..321 1 NC_013223.1 KEGG: dma:DMR_00120 hypothetical protein; hypothetical protein 321 8420362 Dret_0001 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196881.1 31 D 485915 CDS YP_003196882.1 258404140 8417804 703..1515 1 NC_013223.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_0031 chromosome segregation ATPase; Cobyrinic acid ac-diamide synthase 1515 8417804 Dret_0002 Desulfohalobium retbaense DSM 5692 Cobyrinic acid ac-diamide synthase YP_003196882.1 703 D 485915 CDS YP_003196883.1 258404141 8417805 complement(1715..2137) 1 NC_013223.1 KEGG: dma:DMR_00140 hypothetical protein; hypothetical protein 2137 8417805 Dret_0003 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196883.1 1715 R 485915 CDS YP_003196884.1 258404142 8417806 2671..3615 1 NC_013223.1 KEGG: dvu:DVU3360 ParB family protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parB-like partition protein 3615 8417806 Dret_0004 Desulfohalobium retbaense DSM 5692 parB-like partition protein YP_003196884.1 2671 D 485915 CDS YP_003196885.1 258404143 8417807 3740..4756 1 NC_013223.1 TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: dde:Dde_0028 D-alpha,beta-D-heptose 7- phosphate 1-kinase; rfaE bifunctional protein 4756 8417807 Dret_0005 Desulfohalobium retbaense DSM 5692 rfaE bifunctional protein YP_003196885.1 3740 D 485915 CDS YP_003196886.1 258404144 8417808 4842..7070 1 NC_013223.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 7070 8417808 Dret_0006 Desulfohalobium retbaense DSM 5692 ribonucleotide-diphosphate reductase subunit alpha YP_003196886.1 4842 D 485915 CDS YP_003196887.1 258404145 8417809 7122..7817 1 NC_013223.1 KEGG: dde:Dde_0114 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 7817 8417809 Dret_0007 Desulfohalobium retbaense DSM 5692 cell division ATP-binding protein FtsE YP_003196887.1 7122 D 485915 CDS YP_003196888.1 258404146 8417810 7814..8689 1 NC_013223.1 PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0115 cell division protein FtsX; hypothetical protein 8689 8417810 Dret_0008 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196888.1 7814 D 485915 CDS YP_003196889.1 258404147 8417811 8770..10440 1 NC_013223.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 10440 8417811 Dret_0009 Desulfohalobium retbaense DSM 5692 dihydroxy-acid dehydratase YP_003196889.1 8770 D 485915 CDS YP_003196890.1 258404148 8417812 10491..11237 1 NC_013223.1 PFAM: Methyltransferase type 11; Methionine biosynthesis MetW protein; Methyltransferase type 12; KEGG: dvl:Dvul_0026 methyltransferase type 11; type 11 methyltransferase 11237 8417812 Dret_0010 Desulfohalobium retbaense DSM 5692 type 11 methyltransferase YP_003196890.1 10491 D 485915 CDS YP_003196891.1 258404149 8417813 complement(11297..12538) 1 NC_013223.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: dde:Dde_0230 molybdopterin molybdochelatase; molybdenum cofactor synthesis domain-containing protein 12538 8417813 Dret_0011 Desulfohalobium retbaense DSM 5692 molybdenum cofactor synthesis domain-containing protein YP_003196891.1 11297 R 485915 CDS YP_003196892.1 258404150 8417814 complement(12543..13250) 1 NC_013223.1 PFAM: Fe-S cluster domain protein; KEGG: dvl:Dvul_2363 molybdopterin-guanine dinucleotide biosynthesis MobB region; Fe-S cluster domain-containing protein 13250 8417814 Dret_0012 Desulfohalobium retbaense DSM 5692 Fe-S cluster domain-containing protein YP_003196892.1 12543 R 485915 CDS YP_003196893.1 258404151 8417815 13779..15038 1 NC_013223.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 15038 hisS 8417815 hisS Desulfohalobium retbaense DSM 5692 histidyl-tRNA synthetase YP_003196893.1 13779 D 485915 CDS YP_003196894.1 258404152 8417816 15251..17059 1 NC_013223.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 17059 aspS 8417816 aspS Desulfohalobium retbaense DSM 5692 aspartyl-tRNA synthetase YP_003196894.1 15251 D 485915 CDS YP_003196895.1 258404153 8417817 17076..17579 1 NC_013223.1 KEGG: dde:Dde_0013 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 17579 8417817 Dret_0015 Desulfohalobium retbaense DSM 5692 peptide deformylase YP_003196895.1 17076 D 485915 CDS YP_003196896.1 258404154 8417818 17561..18529 1 NC_013223.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: dde:Dde_0014 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 18529 8417818 Dret_0016 Desulfohalobium retbaense DSM 5692 methionyl-tRNA formyltransferase YP_003196896.1 17561 D 485915 CDS YP_003196897.1 258404155 8417819 18603..19499 1 NC_013223.1 PFAM: protein of unknown function DUF116; KEGG: dvl:Dvul_0031 hypothetical protein; hypothetical protein 19499 8417819 Dret_0017 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196897.1 18603 D 485915 CDS YP_003196898.1 258404156 8417820 19568..20857 1 NC_013223.1 PFAM: NusB/RsmB/TIM44; Fmu (Sun) domain protein; KEGG: dma:DMR_00320 rRNA (cytosine-C(5)-)- methyltransferase; NusB/RsmB/TIM44 20857 8417820 Dret_0018 Desulfohalobium retbaense DSM 5692 NusB/RsmB/TIM44 YP_003196898.1 19568 D 485915 CDS YP_003196899.1 258404157 8417821 complement(20979..21893) 1 NC_013223.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate oxidase; KEGG: dvm:DvMF_2143 dihydroorotate dehydrogenase family protein; dihydroorotate dehydrogenase family protein 21893 8417821 Dret_0019 Desulfohalobium retbaense DSM 5692 dihydroorotate dehydrogenase family protein YP_003196899.1 20979 R 485915 CDS YP_003196900.1 258404158 8417822 complement(21893..22672) 1 NC_013223.1 PFAM: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: dvm:DvMF_2142 dihydroorotate oxidase B, electron transfer subunit; dihydroorotate dehydrogenase electron transfer subunit 22672 8417822 Dret_0020 Desulfohalobium retbaense DSM 5692 dihydroorotate dehydrogenase electron transfer subunit YP_003196900.1 21893 R 485915 CDS YP_003196901.1 258404159 8417823 complement(22750..24351) 1 NC_013223.1 PFAM: SMC domain protein; KEGG: dvm:DvMF_0923 SMC domain protein; SMC domain-containing protein 24351 8417823 Dret_0021 Desulfohalobium retbaense DSM 5692 SMC domain-containing protein YP_003196901.1 22750 R 485915 CDS YP_003196902.1 258404160 8417824 complement(24475..25167) 1 NC_013223.1 KEGG: dol:Dole_1611 hypothetical protein; hypothetical protein 25167 8417824 Dret_0022 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196902.1 24475 R 485915 CDS YP_003196903.1 258404161 8417825 25202..25597 1 NC_013223.1 PFAM: protein of unknown function UPF0047; KEGG: dde:Dde_3175 hypothetical protein; hypothetical protein 25597 8417825 Dret_0023 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196903.1 25202 D 485915 CDS YP_003196904.1 258404162 8417826 complement(25691..27022) 1 NC_013223.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dvm:DvMF_1427 metal dependent phosphohydrolase; metal dependent phosphohydrolase 27022 8417826 Dret_0024 Desulfohalobium retbaense DSM 5692 metal dependent phosphohydrolase YP_003196904.1 25691 R 485915 CDS YP_003196905.1 258404163 8417827 27177..28058 1 NC_013223.1 PFAM: periplasmic solute binding protein; KEGG: dvl:Dvul_1725 periplasmic solute binding protein; periplasmic solute binding protein 28058 8417827 Dret_0025 Desulfohalobium retbaense DSM 5692 periplasmic solute binding protein YP_003196905.1 27177 D 485915 CDS YP_003196906.1 258404164 8417828 28055..28876 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2209 ATPase; ABC transporter 28876 8417828 Dret_0026 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003196906.1 28055 D 485915 CDS YP_003196907.1 258404165 8417829 28876..29703 1 NC_013223.1 PFAM: ABC-3 protein; KEGG: dvm:DvMF_0117 ABC-3 protein; ABC transporter 29703 8417829 Dret_0027 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003196907.1 28876 D 485915 CDS YP_003196908.1 258404166 8417830 30016..31941 1 NC_013223.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfu:Sfum_2744 TonB-dependent receptor; TonB-dependent receptor 31941 8417830 Dret_0028 Desulfohalobium retbaense DSM 5692 TonB-dependent receptor YP_003196908.1 30016 D 485915 CDS YP_003196909.1 258404167 8417831 31973..32836 1 NC_013223.1 PFAM: periplasmic binding protein; KEGG: dol:Dole_2060 periplasmic binding protein; periplasmic binding protein 32836 8417831 Dret_0029 Desulfohalobium retbaense DSM 5692 periplasmic binding protein YP_003196909.1 31973 D 485915 CDS YP_003196910.1 258404168 8417832 32833..32988 1 NC_013223.1 hypothetical protein 32988 8417832 Dret_0030 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196910.1 32833 D 485915 CDS YP_003196911.1 258404169 8417833 33426..34427 1 NC_013223.1 PFAM: transport system permease protein; KEGG: dol:Dole_2061 transport system permease protein; transport system permease 34427 8417833 Dret_0031 Desulfohalobium retbaense DSM 5692 transport system permease YP_003196911.1 33426 D 485915 CDS YP_003196912.1 258404170 8417834 34415..35209 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dol:Dole_2062 ABC transporter-related protein; ABC transporter 35209 8417834 Dret_0032 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003196912.1 34415 D 485915 CDS YP_003196913.1 258404171 8417835 complement(35457..36686) 1 NC_013223.1 PFAM: major facilitator superfamily MFS_1; KEGG: dat:HRM2_34570 NarK; major facilitator superfamily protein 36686 8417835 Dret_0033 Desulfohalobium retbaense DSM 5692 major facilitator superfamily protein YP_003196913.1 35457 R 485915 CDS YP_003196914.1 258404172 8417836 37283..39274 1 NC_013223.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: geo:Geob_1218 alpha amylase catalytic region; alpha amylase 39274 8417836 Dret_0034 Desulfohalobium retbaense DSM 5692 alpha amylase YP_003196914.1 37283 D 485915 CDS YP_003196915.1 258404173 8417837 39394..42723 1 NC_013223.1 KEGG: gbm:Gbem_0136 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase- fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose synthase 42723 8417837 Dret_0035 Desulfohalobium retbaense DSM 5692 trehalose synthase YP_003196915.1 39394 D 485915 CDS YP_003196916.1 258404174 8417838 42778..44685 1 NC_013223.1 KEGG: sfu:Sfum_3451 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan-branching protein 44685 8417838 Dret_0036 Desulfohalobium retbaense DSM 5692 1,4-alpha-glucan-branching protein YP_003196916.1 42778 D 485915 CDS YP_003196917.1 258404175 8417839 44682..46526 1 NC_013223.1 KEGG: sfu:Sfum_2349 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose trehalohydrolase 46526 8417839 Dret_0037 Desulfohalobium retbaense DSM 5692 malto-oligosyltrehalose trehalohydrolase YP_003196917.1 44682 D 485915 CDS YP_003196918.1 258404176 8417840 47020..49443 1 NC_013223.1 PFAM: glycoside hydrolase family 57; KEGG: sfu:Sfum_2350 glycoside hydrolase, family 57; glycoside hydrolase family protein 49443 8417840 Dret_0038 Desulfohalobium retbaense DSM 5692 glycoside hydrolase family protein YP_003196918.1 47020 D 485915 CDS YP_003196919.1 258404177 8417841 49440..52169 1 NC_013223.1 KEGG: sfu:Sfum_2351 malto-oligosyltrehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose synthase 52169 8417841 Dret_0039 Desulfohalobium retbaense DSM 5692 malto-oligosyltrehalose synthase YP_003196919.1 49440 D 485915 CDS YP_003196920.1 258404178 8417842 52417..52566 1 NC_013223.1 hypothetical protein 52566 8417842 Dret_0040 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196920.1 52417 D 485915 CDS YP_003196921.1 258404179 8417843 52682..54190 1 NC_013223.1 KEGG: pca:Pcar_0554 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase 54190 8417843 Dret_0041 Desulfohalobium retbaense DSM 5692 4-alpha-glucanotransferase YP_003196921.1 52682 D 485915 CDS YP_003196922.1 258404180 8417844 54631..56523 1 NC_013223.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dps:DP1333 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 56523 8417844 Dret_0042 Desulfohalobium retbaense DSM 5692 AMP-dependent synthetase and ligase YP_003196922.1 54631 D 485915 CDS YP_003196923.1 258404181 8417846 57308..59257 1 NC_013223.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: dde:Dde_2639 threonyl-tRNA synthetase / Ser- tRNA(Thr) hydrolase; threonyl-tRNA synthetase 59257 8417846 Dret_0043 Desulfohalobium retbaense DSM 5692 threonyl-tRNA synthetase YP_003196923.1 57308 D 485915 CDS YP_003196924.1 258404182 8417847 59229..59750 1 NC_013223.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 59750 infC 8417847 infC Desulfohalobium retbaense DSM 5692 translation initiation factor IF-3 YP_003196924.1 59229 D 485915 CDS YP_003196925.1 258404183 8417848 59859..60056 1 NC_013223.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: pca:Pcar_1420 ribosomal protein L35; 50S ribosomal protein L35 60056 8417848 Dret_0045 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L35 YP_003196925.1 59859 D 485915 CDS YP_003196926.1 258404184 8417849 60097..60450 1 NC_013223.1 TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: dvl:Dvul_0710 50S ribosomal protein L20; 50S ribosomal protein L20 60450 8417849 Dret_0046 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L20 YP_003196926.1 60097 D 485915 CDS YP_003196927.1 258404185 8417850 60452..61504 1 NC_013223.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 61504 pheS 8417850 pheS Desulfohalobium retbaense DSM 5692 phenylalanyl-tRNA synthetase subunit alpha YP_003196927.1 60452 D 485915 CDS YP_003196928.1 258404186 8417851 61966..64362 1 NC_013223.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 64362 pheT 8417851 pheT Desulfohalobium retbaense DSM 5692 phenylalanyl-tRNA synthetase subunit beta YP_003196928.1 61966 D 485915 CDS YP_003196929.1 258404187 8417852 64806..65099 1 NC_013223.1 KEGG: dvl:Dvul_1822 hypothetical protein; hypothetical protein 65099 8417852 Dret_0049 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196929.1 64806 D 485915 CDS YP_003196930.1 258404188 8417853 65099..65701 1 NC_013223.1 PFAM: protein of unknown function DUF340 membrane; KEGG: dde:Dde_2305 hypothetical protein; hypothetical protein 65701 8417853 Dret_0050 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196930.1 65099 D 485915 CDS YP_003196931.1 258404189 8417854 complement(66118..66459) 1 NC_013223.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: dma:DMR_10720 MerR family transcriptional regulator; transcriptional regulator, MerR family 66459 8417854 Dret_0051 Desulfohalobium retbaense DSM 5692 transcriptional regulator, MerR family YP_003196931.1 66118 R 485915 CDS YP_003196932.1 258404190 8417855 complement(66804..67232) 1 NC_013223.1 KEGG: dvm:DvMF_0531 hypothetical protein; hypothetical protein 67232 8417855 Dret_0052 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196932.1 66804 R 485915 CDS YP_003196933.1 258404191 8417856 67565..68833 1 NC_013223.1 KEGG: dvl:Dvul_0331 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 68833 8417856 Dret_0053 Desulfohalobium retbaense DSM 5692 putative PAS/PAC sensor protein YP_003196933.1 67565 D 485915 CDS YP_003196934.1 258404192 8417857 69042..70058 1 NC_013223.1 KEGG: dde:Dde_0097 hypothetical protein; hypothetical protein 70058 8417857 Dret_0054 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196934.1 69042 D 485915 CDS YP_003196935.1 258404193 8417858 complement(70510..71709) 1 NC_013223.1 PFAM: sulphate transporter; KEGG: dat:HRM2_13280 SulP1; sulfate transporter 71709 8417858 Dret_0055 Desulfohalobium retbaense DSM 5692 sulfate transporter YP_003196935.1 70510 R 485915 CDS YP_003196936.1 258404194 8417859 complement(73677..74741) 1 NC_013223.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: oan:Oant_4496 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 74741 8417859 Dret_0056 Desulfohalobium retbaense DSM 5692 transposase IS116/IS110/IS902 family protein YP_003196936.1 73677 R 485915 CDS YP_003196937.1 258404195 8417860 complement(74991..76643) 1 NC_013223.1 KEGG: rpb:RPB_2521 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 76643 8417860 Dret_0057 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor-containing diguanylate cyclase YP_003196937.1 74991 R 485915 CDS YP_003196938.1 258404196 8417861 complement(77169..77591) 1 NC_013223.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: pca:Pcar_1342 putative acetoin utilization protein AcuB; hypothetical protein 77591 8417861 Dret_0058 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196938.1 77169 R 485915 CDS YP_003196939.1 258404197 8417862 77997..79796 1 NC_013223.1 PFAM: Extracellular ligand-binding receptor; KEGG: sat:SYN_00659 methyl-accepting chemotaxis protein; extracellular ligand-binding receptor 79796 8417862 Dret_0059 Desulfohalobium retbaense DSM 5692 extracellular ligand-binding receptor YP_003196939.1 77997 D 485915 CDS YP_003196940.1 258404198 8417864 complement(80362..81225) 1 NC_013223.1 PFAM: beta-lactamase domain protein; KEGG: dal:Dalk_1100 metal-dependent hydrolase; beta-lactamase domain-containing protein 81225 8417864 Dret_0060 Desulfohalobium retbaense DSM 5692 beta-lactamase domain-containing protein YP_003196940.1 80362 R 485915 CDS YP_003196941.1 258404199 8417865 81586..82419 1 NC_013223.1 PFAM: Rhodanese domain protein; Rubrerythrin; SMART: Rhodanese domain protein; KEGG: dat:HRM2_46820 rhodanese-like domain protein; rhodanese domain-containing protein 82419 8417865 Dret_0061 Desulfohalobium retbaense DSM 5692 rhodanese domain-containing protein YP_003196941.1 81586 D 485915 CDS YP_003196942.1 258404200 8417866 82462..82578 1 NC_013223.1 hypothetical protein 82578 8417866 Dret_0062 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196942.1 82462 D 485915 CDS YP_003196943.1 258404201 8417867 82604..82747 1 NC_013223.1 hypothetical protein 82747 8417867 Dret_0063 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196943.1 82604 D 485915 CDS YP_003196944.1 258404202 8417868 82862..83926 1 NC_013223.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: oan:Oant_4496 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 83926 8417868 Dret_0064 Desulfohalobium retbaense DSM 5692 transposase IS116/IS110/IS902 family protein YP_003196944.1 82862 D 485915 CDS YP_003196945.1 258404203 8417869 84795..85904 1 NC_013223.1 TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2562 pyridine nucleotide-disulfide oxidoreductase; pyridine nucleotide-disulfide oxidoreductase family protein 85904 8417869 Dret_0065 Desulfohalobium retbaense DSM 5692 pyridine nucleotide-disulfide oxidoreductase family protein YP_003196945.1 84795 D 485915 CDS YP_003196946.1 258404204 8417870 complement(86168..86707) 1 NC_013223.1 PFAM: Ferritin Dps family protein; Rubrerythrin; KEGG: dvm:DvMF_1981 ferritin Dps family protein; ferritin Dps family protein 86707 8417870 Dret_0066 Desulfohalobium retbaense DSM 5692 ferritin Dps family protein YP_003196946.1 86168 R 485915 CDS YP_003196947.1 258404205 8417871 complement(86664..87353) 1 NC_013223.1 hypothetical protein 87353 8417871 Dret_0067 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196947.1 86664 R 485915 CDS YP_003196948.1 258404206 8417872 complement(87655..89748) 1 NC_013223.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 89748 8417872 Dret_0068 Desulfohalobium retbaense DSM 5692 anaerobic ribonucleoside triphosphate reductase YP_003196948.1 87655 R 485915 CDS YP_003196949.1 258404207 8417873 complement(89885..90511) 1 NC_013223.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: dde:Dde_0278 radical SAM domain-containing protein; anaerobic ribonucleoside-triphosphate reductase activating protein 90511 8417873 Dret_0069 Desulfohalobium retbaense DSM 5692 anaerobic ribonucleoside-triphosphate reductase activating protein YP_003196949.1 89885 R 485915 CDS YP_003196950.1 258404208 8417874 91055..91342 1 NC_013223.1 PFAM: cysteine-rich small domain; KEGG: dma:DMR_05450 hypothetical protein; hypothetical protein 91342 8417874 Dret_0070 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196950.1 91055 D 485915 CDS YP_003196951.1 258404209 8417875 92311..92799 1 NC_013223.1 KEGG: dps:DP0488 DctQ (C4-dicarboxylate permease, small subunit); DctQ (C4-dicarboxylate permease, small subunit) 92799 8417875 Dret_0071 Desulfohalobium retbaense DSM 5692 DctQ (C4-dicarboxylate permease, small subunit) YP_003196951.1 92311 D 485915 CDS YP_003196952.1 258404210 8417876 92792..94090 1 NC_013223.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dps:DP0487 DctM (C4-dicarboxylate permease, large subunit); TRAP dicarboxylate transporter subunit DctM 94090 8417876 Dret_0072 Desulfohalobium retbaense DSM 5692 TRAP dicarboxylate transporter subunit DctM YP_003196952.1 92792 D 485915 CDS YP_003196953.1 258404211 8417877 94117..95109 1 NC_013223.1 PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dps:DP0483 DctP (periplasmic C4-dicarboxylate binding protein); Extracellular solute-binding protein 95109 8417877 Dret_0073 Desulfohalobium retbaense DSM 5692 Extracellular solute-binding protein YP_003196953.1 94117 D 485915 CDS YP_003196954.1 258404212 8417878 complement(95582..97477) 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: dps:DP0482 sigma54-dependent transcriptional regulator; Fis family sigma-54 specific transcriptional regulator 97477 8417878 Dret_0074 Desulfohalobium retbaense DSM 5692 Fis family sigma-54 specific transcriptional regulator YP_003196954.1 95582 R 485915 CDS YP_003196955.1 258404213 8417879 97749..98843 1 NC_013223.1 PFAM: NAD/NADP octopine/nopaline dehydrogenase; NAD- dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: glo:Glov_2392 NAD/NADP octopine/nopaline dehydrogenase; NAD/NADP octopine/nopaline dehydrogenase 98843 8417879 Dret_0075 Desulfohalobium retbaense DSM 5692 NAD/NADP octopine/nopaline dehydrogenase YP_003196955.1 97749 D 485915 CDS YP_003196956.1 258404214 8417880 complement(99320..102208) 1 NC_013223.1 PFAM: DEAD/DEAH box helicase domain protein; Protein of unknown function DUF1998; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dma:DMR_45970 putative helicase; DEAD/DEAH box helicase 102208 8417880 Dret_0076 Desulfohalobium retbaense DSM 5692 DEAD/DEAH box helicase YP_003196956.1 99320 R 485915 CDS YP_003196957.1 258404215 8417881 complement(102208..103581) 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dma:DMR_45950 response regulator; two component, sigma54 specific, transcriptional regulator, Fis family 103581 8417881 Dret_0077 Desulfohalobium retbaense DSM 5692 two component, sigma54 specific, transcriptional regulator, Fis family YP_003196957.1 102208 R 485915 CDS YP_003196958.1 258404216 8417882 complement(103606..105033) 1 NC_013223.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dvm:DvMF_2201 integral membrane sensor signal transduction histidine kinase; histidine kinase 105033 8417882 Dret_0078 Desulfohalobium retbaense DSM 5692 histidine kinase YP_003196958.1 103606 R 485915 CDS YP_003196959.1 258404217 8417883 complement(105309..106487) 1 NC_013223.1 PFAM: aminotransferase class I and II; KEGG: dvm:DvMF_2204 aminotransferase class I and II; class I and II aminotransferase 106487 8417883 Dret_0079 Desulfohalobium retbaense DSM 5692 class I and II aminotransferase YP_003196959.1 105309 R 485915 CDS YP_003196960.1 258404218 8417884 106922..107356 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2277 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 107356 8417884 Dret_0080 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003196960.1 106922 D 485915 CDS YP_003196961.1 258404219 8417885 107346..109112 1 NC_013223.1 KEGG: dvl:Dvul_2276 aldehyde ferredoxin oxidoreductase; PFAM: Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase 109112 8417885 Dret_0081 Desulfohalobium retbaense DSM 5692 Aldehyde ferredoxin oxidoreductase YP_003196961.1 107346 D 485915 CDS YP_003196962.1 258404220 8417886 109380..112220 1 NC_013223.1 KEGG: dal:Dalk_0107 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; PAS fold-3 domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3; PAC repeat-containing protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein; ATP-binding region ATPase domain protein; PAS/PAC sensor hybrid histidine kinase 112220 8417886 Dret_0082 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor hybrid histidine kinase YP_003196962.1 109380 D 485915 CDS YP_003196963.1 258404221 8417887 complement(112305..114560) 1 NC_013223.1 KEGG: dde:Dde_0106 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; DNA topoisomerase I 114560 8417887 Dret_0083 Desulfohalobium retbaense DSM 5692 DNA topoisomerase I YP_003196963.1 112305 R 485915 CDS YP_003196964.1 258404222 8417888 114610..115548 1 NC_013223.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 115548 era 8417888 era Desulfohalobium retbaense DSM 5692 GTP-binding protein Era YP_003196964.1 114610 D 485915 CDS YP_003196965.1 258404223 8417889 115576..116283 1 NC_013223.1 PFAM: alanine racemase domain protein; KEGG: dma:DMR_46160 hypothetical protein; alanine racemase domain-containing protein 116283 8417889 Dret_0085 Desulfohalobium retbaense DSM 5692 alanine racemase domain-containing protein YP_003196965.1 115576 D 485915 CDS YP_003196966.1 258404224 8417890 complement(116843..117577) 1 NC_013223.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: dde:Dde_3581 RNA methyltransferase TrmH, group 3; TrmH family RNA methyltransferase 117577 8417890 Dret_0086 Desulfohalobium retbaense DSM 5692 TrmH family RNA methyltransferase YP_003196966.1 116843 R 485915 CDS YP_003196967.1 258404225 8417891 117707..119569 1 NC_013223.1 PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: dde:Dde_3580 peptidoglycan-binding LysM; Lytic transglycosylase catalytic 119569 8417891 Dret_0087 Desulfohalobium retbaense DSM 5692 Lytic transglycosylase catalytic YP_003196967.1 117707 D 485915 CDS YP_003196968.1 258404226 8417892 complement(119747..120562) 1 NC_013223.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: dvu:DVU0115 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 120562 8417892 Dret_0088 Desulfohalobium retbaense DSM 5692 shikimate 5-dehydrogenase YP_003196968.1 119747 R 485915 CDS YP_003196969.1 258404227 8417893 complement(120640..121197) 1 NC_013223.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: dde:Dde_0046 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit; pyruvate/ketoisovalerate oxidoreductase 121197 8417893 Dret_0089 Desulfohalobium retbaense DSM 5692 pyruvate/ketoisovalerate oxidoreductase YP_003196969.1 120640 R 485915 CDS YP_003196970.1 258404228 8417894 complement(121194..121964) 1 NC_013223.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dde:Dde_0045 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative; thiamine pyrophosphate TPP-binding domain-containing protein 121964 8417894 Dret_0090 Desulfohalobium retbaense DSM 5692 thiamine pyrophosphate TPP-binding domain-containing protein YP_003196970.1 121194 R 485915 CDS YP_003196971.1 258404229 8417895 complement(121957..123036) 1 NC_013223.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; 2-ketoisovalerate ferredoxin reductase 123036 8417895 Dret_0091 Desulfohalobium retbaense DSM 5692 2-ketoisovalerate ferredoxin reductase YP_003196971.1 121957 R 485915 CDS YP_003196972.1 258404230 8417896 complement(123026..123268) 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0043 2-oxoglutarate ferredoxin oxidoreductase, delta subunit; 4Fe-4S ferredoxin 123268 8417896 Dret_0092 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003196972.1 123026 R 485915 CDS YP_003196973.1 258404231 8417897 complement(123460..124551) 1 NC_013223.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 124551 queA 8417897 queA Desulfohalobium retbaense DSM 5692 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_003196973.1 123460 R 485915 CDS YP_003196974.1 258404232 8417898 124913..125872 1 NC_013223.1 KEGG: dal:Dalk_3658 hypothetical protein; hypothetical protein 125872 8417898 Dret_0094 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196974.1 124913 D 485915 CDS YP_003196975.1 258404233 8417899 126452..128056 1 NC_013223.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dat:HRM2_09100 putative methyl-accepting chemotaxis protein; phosphonate ABC transporter substrate-binding protein 128056 8417899 Dret_0095 Desulfohalobium retbaense DSM 5692 phosphonate ABC transporter substrate-binding protein YP_003196975.1 126452 D 485915 CDS YP_003196976.1 258404234 8417900 128053..129630 1 NC_013223.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gme:Gmet_2454 histidine kinase; histidine kinase 129630 8417900 Dret_0096 Desulfohalobium retbaense DSM 5692 histidine kinase YP_003196976.1 128053 D 485915 CDS YP_003196977.1 258404235 8417901 129627..130973 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: scl:sce5791 sigma-54 dependent DNA-binding response regulator; two component, sigma54 specific, transcriptional regulator, Fis family 130973 8417901 Dret_0097 Desulfohalobium retbaense DSM 5692 two component, sigma54 specific, transcriptional regulator, Fis family YP_003196977.1 129627 D 485915 CDS YP_003196978.1 258404236 8417902 131134..133569 1 NC_013223.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: dde:Dde_0604 pyruvate,water dikinase; pyruvate phosphate dikinase PEP/pyruvate- binding protein 133569 8417902 Dret_0098 Desulfohalobium retbaense DSM 5692 pyruvate phosphate dikinase PEP/pyruvate- binding protein YP_003196978.1 131134 D 485915 CDS YP_003196979.1 258404237 8417903 133739..134851 1 NC_013223.1 PFAM: Dual specificity protein phosphatase; SMART: Dual specificity phosphatase, subgroup, catalytic domain; KEGG: dde:Dde_0605 protein tyrosine phosphatase / dual specificity protein phosphatase; dual specificity protein phosphatase 134851 8417903 Dret_0099 Desulfohalobium retbaense DSM 5692 dual specificity protein phosphatase YP_003196979.1 133739 D 485915 CDS YP_003196980.1 258404238 8417904 complement(135040..136242) 1 NC_013223.1 TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dvm:DvMF_2659 cysteine desulfurase NifS; cysteine desulfurase NifS 136242 8417904 Dret_0100 Desulfohalobium retbaense DSM 5692 cysteine desulfurase NifS YP_003196980.1 135040 R 485915 CDS YP_003196981.1 258404239 8417905 complement(136239..137090) 1 NC_013223.1 TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dma:DMR_17100 nitrogen fixation protein NifU; Fe-S cluster assembly protein NifU 137090 8417905 Dret_0101 Desulfohalobium retbaense DSM 5692 Fe-S cluster assembly protein NifU YP_003196981.1 136239 R 485915 CDS YP_003196982.1 258404240 8417906 complement(137214..138083) 1 NC_013223.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dal:Dalk_4375 protein of unknown function DUF6 transmembrane; hypothetical protein 138083 8417906 Dret_0102 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196982.1 137214 R 485915 CDS YP_003196983.1 258404241 8417907 complement(138086..138430) 1 NC_013223.1 PFAM: protein of unknown function DUF1291; KEGG: dal:Dalk_4103 protein of unknown function DUF1291; hypothetical protein 138430 8417907 Dret_0103 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003196983.1 138086 R 485915 CDS YP_003196984.1 258404242 8417908 complement(138947..140266) 1 NC_013223.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sfu:Sfum_3082 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 140266 8417908 Dret_0104 Desulfohalobium retbaense DSM 5692 aromatic hydrocarbon degradation membrane protein YP_003196984.1 138947 R 485915 CDS YP_003196985.1 258404243 8417909 140473..140922 1 NC_013223.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gur:Gura_1130 MarR family transcriptional regulator; transcriptional regulator, MarR family 140922 8417909 Dret_0105 Desulfohalobium retbaense DSM 5692 transcriptional regulator, MarR family YP_003196985.1 140473 D 485915 CDS YP_003196986.1 258404244 8417910 complement(141458..142153) 1 NC_013223.1 PFAM: regulatory protein MerR; KEGG: dde:Dde_0126 MerR family transcriptional regulator; regulatory protein MerR 142153 8417910 Dret_0106 Desulfohalobium retbaense DSM 5692 regulatory protein MerR YP_003196986.1 141458 R 485915 CDS YP_003196987.1 258404245 8417911 142274..143521 1 NC_013223.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tgr:Tgr7_1569 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit 143521 8417911 Dret_0107 Desulfohalobium retbaense DSM 5692 RND family efflux transporter MFP subunit YP_003196987.1 142274 D 485915 CDS YP_003196988.1 258404246 8417912 143518..146619 1 NC_013223.1 PFAM: acriflavin resistance protein; KEGG: pca:Pcar_0669 AcrB/AcrD/AcrF family cation efflux protein; acriflavin resistance protein 146619 8417912 Dret_0108 Desulfohalobium retbaense DSM 5692 acriflavin resistance protein YP_003196988.1 143518 D 485915 CDS YP_003196989.1 258404247 8417913 146845..147420 1 NC_013223.1 PFAM: NADPH-dependent FMN reductase; KEGG: sat:SYN_02920 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 147420 8417913 Dret_0109 Desulfohalobium retbaense DSM 5692 NADPH-dependent FMN reductase YP_003196989.1 146845 D 485915 CDS YP_003196990.1 258404248 8417914 147675..149789 1 NC_013223.1 PFAM: AsmA family protein; KEGG: dal:Dalk_3707 AsmA family protein; AsmA family protein 149789 8417914 Dret_0110 Desulfohalobium retbaense DSM 5692 AsmA family protein YP_003196990.1 147675 D 485915 CDS YP_003196991.1 258404249 8417915 149877..150668 1 NC_013223.1 PFAM: alpha/beta hydrolase fold; KEGG: sfu:Sfum_3016 3-oxoadipate enol-lactonase; alpha/beta hydrolase fold protein 150668 8417915 Dret_0111 Desulfohalobium retbaense DSM 5692 alpha/beta hydrolase fold protein YP_003196991.1 149877 D 485915 CDS YP_003196992.1 258404250 8417916 complement(150812..151153) 1 NC_013223.1 PFAM: nitrogen regulatory protein P-II; KEGG: dde:Dde_3493 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 151153 8417916 Dret_0112 Desulfohalobium retbaense DSM 5692 nitrogen regulatory protein P-II YP_003196992.1 150812 R 485915 CDS YP_003196993.1 258404251 8417917 complement(151165..152541) 1 NC_013223.1 TIGRFAM: ammonium transporter; PFAM: ammonium transporter; KEGG: dde:Dde_3492 ammonium transporter; ammonium transporter 152541 8417917 Dret_0113 Desulfohalobium retbaense DSM 5692 ammonium transporter YP_003196993.1 151165 R 485915 CDS YP_003196994.1 258404252 8417918 153117..153920 1 NC_013223.1 catalyzes the reversible formation of fructose 1,6-bisphosphate from glycerone phosphate and D-glyceraldehyde 3-phosphate; fructose-bisphosphate aldolase 153920 8417918 Dret_0114 Desulfohalobium retbaense DSM 5692 fructose-bisphosphate aldolase YP_003196994.1 153117 D 485915 CDS YP_003196995.1 258404253 8417919 153967..154938 1 NC_013223.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-aribino-heptulonate 7-phosphate; 3-dehydroquinate synthase 154938 8417919 Dret_0115 Desulfohalobium retbaense DSM 5692 3-dehydroquinate synthase YP_003196995.1 153967 D 485915 CDS YP_003196996.1 258404254 8417920 154942..156075 1 NC_013223.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; Chorismate mutase; KEGG: dvm:DvMF_1749 prephenate dehydratase; chorismate mutase 156075 8417920 Dret_0116 Desulfohalobium retbaense DSM 5692 chorismate mutase YP_003196996.1 154942 D 485915 CDS YP_003196997.1 258404255 8417921 156078..157412 1 NC_013223.1 KEGG: dma:DMR_05340 3-phosphoshikimate 1- carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); 3-phosphoshikimate 1-carboxyvinyltransferase 157412 8417921 Dret_0117 Desulfohalobium retbaense DSM 5692 3-phosphoshikimate 1-carboxyvinyltransferase YP_003196997.1 156078 D 485915 CDS YP_003196998.1 258404256 8417922 157412..158200 1 NC_013223.1 PFAM: Prephenate dehydrogenase; KEGG: dvm:DvMF_1747 prephenate dehydrogenase; prephenate dehydrogenase 158200 8417922 Dret_0118 Desulfohalobium retbaense DSM 5692 prephenate dehydrogenase YP_003196998.1 157412 D 485915 CDS YP_003196999.1 258404257 8417923 158436..159857 1 NC_013223.1 PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; KEGG: dma:DMR_05320 anthranilate synthase component I; anthranilate synthase 159857 8417923 Dret_0119 Desulfohalobium retbaense DSM 5692 anthranilate synthase YP_003196999.1 158436 D 485915 CDS YP_003197000.1 258404258 8417924 159838..160410 1 NC_013223.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: dma:DMR_05310 anthranilate synthase component II; glutamine amidotransferase of anthranilate synthase 160410 8417924 Dret_0120 Desulfohalobium retbaense DSM 5692 glutamine amidotransferase of anthranilate synthase YP_003197000.1 159838 D 485915 CDS YP_003197001.1 258404259 8417925 160436..161443 1 NC_013223.1 KEGG: dvu:DVU0467 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; anthranilate phosphoribosyltransferase 161443 8417925 Dret_0121 Desulfohalobium retbaense DSM 5692 anthranilate phosphoribosyltransferase YP_003197001.1 160436 D 485915 CDS YP_003197002.1 258404260 8417926 161436..162254 1 NC_013223.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: dvl:Dvul_2469 indole-3-glycerol-phosphate synthase; indole-3-glycerol-phosphate synthase 162254 8417926 Dret_0122 Desulfohalobium retbaense DSM 5692 indole-3-glycerol-phosphate synthase YP_003197002.1 161436 D 485915 CDS YP_003197003.1 258404261 8417927 162259..162912 1 NC_013223.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dds:Ddes_1589 phosphoribosylanthranilate isomerase; Phosphoribosylanthranilate isomerase 162912 8417927 Dret_0123 Desulfohalobium retbaense DSM 5692 Phosphoribosylanthranilate isomerase YP_003197003.1 162259 D 485915 CDS YP_003197004.1 258404262 8417928 163151..164356 1 NC_013223.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 164356 8417928 Dret_0124 Desulfohalobium retbaense DSM 5692 tryptophan synthase subunit beta YP_003197004.1 163151 D 485915 CDS YP_003197005.1 258404263 8417929 164400..165167 1 NC_013223.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 165167 trpA 8417929 trpA Desulfohalobium retbaense DSM 5692 tryptophan synthase subunit alpha YP_003197005.1 164400 D 485915 CDS YP_003197006.1 258404264 8417930 165374..166030 1 NC_013223.1 PFAM: sulfotransferase; KEGG: CG9550 gene product from transcript CG9550-RA; sulfotransferase 166030 8417930 Dret_0126 Desulfohalobium retbaense DSM 5692 sulfotransferase YP_003197006.1 165374 D 485915 CDS YP_003197007.1 258404265 8417931 166683..167459 1 NC_013223.1 PFAM: protein of unknown function DUF218; KEGG: spq:SPAB_02523 hypothetical protein; hypothetical protein 167459 8417931 Dret_0127 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197007.1 166683 D 485915 CDS YP_003197008.1 258404266 8417932 complement(167972..168925) 1 NC_013223.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pag:PLES_57731 putative glycine betaine/L- proline ABC transporter, periplasmic component; glycine/betaine ABC transporter substrate-binding protein 168925 8417932 Dret_0128 Desulfohalobium retbaense DSM 5692 glycine/betaine ABC transporter substrate-binding protein YP_003197008.1 167972 R 485915 CDS YP_003197009.1 258404267 8417933 complement(169059..170543) 1 NC_013223.1 TIGRFAM: betaine aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: reu:Reut_B5835 aldehyde dehydrogenase (acceptor); betaine aldehyde dehydrogenase 170543 8417933 Dret_0129 Desulfohalobium retbaense DSM 5692 betaine aldehyde dehydrogenase YP_003197009.1 169059 R 485915 CDS YP_003197010.1 258404268 8417934 complement(170552..172195) 1 NC_013223.1 TIGRFAM: choline dehydrogenase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: dal:Dalk_0705 choline dehydrogenase; choline dehydrogenase 172195 8417934 Dret_0130 Desulfohalobium retbaense DSM 5692 choline dehydrogenase YP_003197010.1 170552 R 485915 CDS YP_003197011.1 258404269 8417935 172603..173073 1 NC_013223.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: scl:sce5381 MarR family transcriptional regulator; transcriptional regulator, MarR family 173073 8417935 Dret_0131 Desulfohalobium retbaense DSM 5692 transcriptional regulator, MarR family YP_003197011.1 172603 D 485915 CDS YP_003197012.1 258404270 8417936 complement(173216..173500) 1 NC_013223.1 KEGG: ade:Adeh_1817 hypothetical protein; hypothetical protein 173500 8417936 Dret_0132 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197012.1 173216 R 485915 CDS YP_003197013.1 258404271 8417937 complement(173835..175046) 1 NC_013223.1 PFAM: protein of unknown function DUF482; KEGG: dma:DMR_08250 hypothetical protein; hypothetical protein 175046 8417937 Dret_0133 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197013.1 173835 R 485915 CDS YP_003197014.1 258404272 8417938 complement(175287..176015) 1 NC_013223.1 PFAM: PHP domain protein; KEGG: dal:Dalk_5110 PHP domain protein; PHP domain-containing protein 176015 8417938 Dret_0134 Desulfohalobium retbaense DSM 5692 PHP domain-containing protein YP_003197014.1 175287 R 485915 CDS YP_003197015.1 258404273 8417939 complement(176147..177172) 1 NC_013223.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: dma:DMR_28310 cytochrome d ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II 177172 8417939 Dret_0135 Desulfohalobium retbaense DSM 5692 cytochrome d ubiquinol oxidase, subunit II YP_003197015.1 176147 R 485915 CDS YP_003197016.1 258404274 8417940 complement(177350..178654) 1 NC_013223.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: dde:Dde_3204 cytochrome d ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 178654 8417940 Dret_0136 Desulfohalobium retbaense DSM 5692 cytochrome bd ubiquinol oxidase subunit I YP_003197016.1 177350 R 485915 CDS YP_003197017.1 258404275 8417941 complement(178671..179384) 1 NC_013223.1 KEGG: dde:Dde_0372 hypothetical protein; hypothetical protein 179384 8417941 Dret_0137 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197017.1 178671 R 485915 CDS YP_003197018.1 258404276 8417942 complement(179501..180706) 1 NC_013223.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: sfu:Sfum_3253 flavodoxin/nitric oxide synthase; beta-lactamase domain-containing protein 180706 8417942 Dret_0138 Desulfohalobium retbaense DSM 5692 beta-lactamase domain-containing protein YP_003197018.1 179501 R 485915 CDS YP_003197019.1 258404277 8417943 complement(180980..181141) 1 NC_013223.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_3222 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 181141 8417943 Dret_0139 Desulfohalobium retbaense DSM 5692 rubredoxin-type Fe(Cys)4 protein YP_003197019.1 180980 R 485915 CDS YP_003197020.1 258404278 8417944 complement(181333..181713) 1 NC_013223.1 TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: dma:DMR_17610 desulfoferrodoxin; desulfoferrodoxin 181713 8417944 Dret_0140 Desulfohalobium retbaense DSM 5692 desulfoferrodoxin YP_003197020.1 181333 R 485915 CDS YP_003197021.1 258404279 8417945 complement(181968..182369) 1 NC_013223.1 PFAM: ferric-uptake regulator; KEGG: dps:DP2867 ferric uptake regulatory protein; ferric uptake regulator, Fur family 182369 8417945 Dret_0141 Desulfohalobium retbaense DSM 5692 ferric uptake regulator, Fur family YP_003197021.1 181968 R 485915 CDS YP_003197022.1 258404280 8417946 complement(182491..184302) 1 NC_013223.1 KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; N-acetylmuramoyl-L-alanine amidase 184302 8417946 Dret_0142 Desulfohalobium retbaense DSM 5692 N-acetylmuramoyl-L-alanine amidase YP_003197022.1 182491 R 485915 CDS YP_003197023.1 258404281 8417947 complement(184324..186147) 1 NC_013223.1 TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; KEGG: dde:Dde_0502 glutamine--fructose-6-phosphate transaminase; glucosamine/fructose-6-phosphate aminotransferase 186147 8417947 Dret_0143 Desulfohalobium retbaense DSM 5692 glucosamine/fructose-6-phosphate aminotransferase YP_003197023.1 184324 R 485915 CDS YP_003197024.1 258404282 8417948 complement(186159..186788) 1 NC_013223.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 186788 8417948 Dret_0144 Desulfohalobium retbaense DSM 5692 putative deoxyribonucleotide triphosphate pyrophosphatase YP_003197024.1 186159 R 485915 CDS YP_003197025.1 258404283 8417949 complement(186886..189273) 1 NC_013223.1 PFAM: MscS Mechanosensitive ion channel; KEGG: dvm:DvMF_2529 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 189273 8417949 Dret_0145 Desulfohalobium retbaense DSM 5692 mechanosensitive ion channel MscS YP_003197025.1 186886 R 485915 CDS YP_003197026.1 258404284 8417950 189631..190947 1 NC_013223.1 KEGG: dvl:Dvul_0234 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme YliG 190947 8417950 Dret_0146 Desulfohalobium retbaense DSM 5692 MiaB-like tRNA modifying enzyme YliG YP_003197026.1 189631 D 485915 CDS YP_003197027.1 258404285 8417951 191085..192812 1 NC_013223.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 192812 rpsA 8417951 rpsA Desulfohalobium retbaense DSM 5692 30S ribosomal protein S1 YP_003197027.1 191085 D 485915 CDS YP_003197028.1 258404286 8417952 192805..193695 1 NC_013223.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: dvm:DvMF_1703 signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 36K type 193695 8417952 Dret_0148 Desulfohalobium retbaense DSM 5692 signal peptide peptidase SppA, 36K type YP_003197028.1 192805 D 485915 CDS YP_003197029.1 258404287 8417953 193688..194764 1 NC_013223.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dma:DMR_08720 hypothetical protein; radical SAM protein 194764 8417953 Dret_0149 Desulfohalobium retbaense DSM 5692 radical SAM protein YP_003197029.1 193688 D 485915 CDS YP_003197030.1 258404288 8417954 194878..195030 1 NC_013223.1 hypothetical protein 195030 8417954 Dret_0150 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197030.1 194878 D 485915 CDS YP_003197031.1 258404289 8417955 195260..195442 1 NC_013223.1 hypothetical protein 195442 8417955 Dret_0151 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197031.1 195260 D 485915 CDS YP_003197032.1 258404290 8417956 195505..196905 1 NC_013223.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: sfu:Sfum_3200 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 196905 8417956 Dret_0152 Desulfohalobium retbaense DSM 5692 RNA-directed DNA polymerase YP_003197032.1 195505 D 485915 CDS YP_003197033.1 258404291 8417957 complement(197120..198196) 1 NC_013223.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: dma:DMR_39140 glucose 1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 198196 8417957 Dret_0153 Desulfohalobium retbaense DSM 5692 glucose-1-phosphate thymidylyltransferase YP_003197033.1 197120 R 485915 CDS YP_003197034.1 258404292 8417958 complement(198245..198436) 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_2933 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 198436 8417958 Dret_0154 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003197034.1 198245 R 485915 CDS YP_003197035.1 258404293 8417959 199079..199570 1 NC_013223.1 KEGG: tmz:Tmz1t_2118 hypothetical protein; hypothetical protein 199570 8417959 Dret_0155 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197035.1 199079 D 485915 CDS YP_003197036.1 258404294 8417960 199625..200317 1 NC_013223.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dvm:DvMF_1205 GntR domain protein; GntR family transcriptional regulator 200317 8417960 Dret_0156 Desulfohalobium retbaense DSM 5692 GntR family transcriptional regulator YP_003197036.1 199625 D 485915 CDS YP_003197037.1 258404295 8417961 200440..201450 1 NC_013223.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: dat:HRM2_12470 LldD; FMN-dependent alpha-hydroxy acid dehydrogenase 201450 8417961 Dret_0157 Desulfohalobium retbaense DSM 5692 FMN-dependent alpha-hydroxy acid dehydrogenase YP_003197037.1 200440 D 485915 CDS YP_003197038.1 258404296 8417962 201464..202261 1 NC_013223.1 PFAM: protein of unknown function DUF81; KEGG: dvl:Dvul_0529 hypothetical protein; hypothetical protein 202261 8417962 Dret_0158 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197038.1 201464 D 485915 CDS YP_003197039.1 258404297 8417963 complement(202804..203313) 1 NC_013223.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_1731 hypothetical protein; N-acetyltransferase GCN5 203313 8417963 Dret_0159 Desulfohalobium retbaense DSM 5692 N-acetyltransferase GCN5 YP_003197039.1 202804 R 485915 CDS YP_003197040.1 258404298 8417964 complement(203491..204273) 1 NC_013223.1 PFAM: anaerobic cobalt chelatase; KEGG: dvl:Dvul_1703 anaerobic cobalt chelatase; anaerobic cobalt chelatase 204273 8417964 Dret_0160 Desulfohalobium retbaense DSM 5692 anaerobic cobalt chelatase YP_003197040.1 203491 R 485915 CDS YP_003197041.1 258404299 8417965 complement(204270..205025) 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1193 ATPase; ABC transporter 205025 8417965 Dret_0161 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003197041.1 204270 R 485915 CDS YP_003197042.1 258404300 8417966 complement(205018..205776) 1 NC_013223.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dvl:Dvul_1937 cobalt ABC transporter, inner membrane subunit CbiQ; cobalt ABC transporter permease 205776 8417966 Dret_0162 Desulfohalobium retbaense DSM 5692 cobalt ABC transporter permease YP_003197042.1 205018 R 485915 CDS YP_003197043.1 258404301 8417967 205967..207106 1 NC_013223.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: dde:Dde_2559 beta-N-acetylhexosaminidase; glycoside hydrolase family 3 207106 8417967 Dret_0163 Desulfohalobium retbaense DSM 5692 glycoside hydrolase family 3 YP_003197043.1 205967 D 485915 CDS YP_003197044.1 258404302 8417968 207223..208188 1 NC_013223.1 PFAM: Twin-arginine translocation pathway, signal sequence; KEGG: dma:DMR_38630 iron-sulfur binding protein; hypothetical protein 208188 8417968 Dret_0164 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197044.1 207223 D 485915 CDS YP_003197045.1 258404303 8417969 208181..208642 1 NC_013223.1 KEGG: dde:Dde_0656 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 208642 8417969 Dret_0165 Desulfohalobium retbaense DSM 5692 iron-sulfur cluster-binding protein YP_003197045.1 208181 D 485915 CDS YP_003197046.1 258404304 8417970 complement(209038..209679) 1 NC_013223.1 PFAM: cytochrome B561; KEGG: dvl:Dvul_0241 cytochrome b561; cytochrome B561 209679 8417970 Dret_0166 Desulfohalobium retbaense DSM 5692 cytochrome B561 YP_003197046.1 209038 R 485915 CDS YP_003197047.1 258404305 8417971 complement(209672..211345) 1 NC_013223.1 KEGG: dvl:Dvul_0242 cytochrome c family protein; Contains selenocysteine; cytochrome c family protein 211345 8417971 Dret_0167 Desulfohalobium retbaense DSM 5692 cytochrome c family protein YP_003197047.1 209672 R 485915 CDS YP_003197048.1 258404306 8417972 211703..213091 1 NC_013223.1 KEGG: dvm:DvMF_1692 PAS modulated sigma54 specific transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold domain protein; PAS fold-4 domain protein; SMART: AAA ATPase; PAS domain containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator 213091 8417972 Dret_0168 Desulfohalobium retbaense DSM 5692 PAS modulated Fis family sigma-54-specific transcriptional regulator YP_003197048.1 211703 D 485915 CDS YP_003197049.1 258404307 8417973 complement(213286..213510) 1 NC_013223.1 KEGG: dps:DP1865 ferredoxin; ferredoxin 213510 8417973 Dret_0169 Desulfohalobium retbaense DSM 5692 ferredoxin YP_003197049.1 213286 R 485915 CDS YP_003197050.1 258404308 8417974 complement(213796..214905) 1 NC_013223.1 KEGG: dma:DMR_25670 hypothetical protein; hypothetical protein 214905 8417974 Dret_0170 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197050.1 213796 R 485915 CDS YP_003197051.1 258404309 8417975 complement(215007..217952) 1 NC_013223.1 PFAM: Glu/Leu/Phe/Val dehydrogenase; KEGG: dde:Dde_1382 glutamate dehydrogenase (NAD); Glu/Leu/Phe/Val dehydrogenase 217952 8417975 Dret_0171 Desulfohalobium retbaense DSM 5692 Glu/Leu/Phe/Val dehydrogenase YP_003197051.1 215007 R 485915 CDS YP_003197052.1 258404310 8417976 complement(218129..219526) 1 NC_013223.1 PFAM: Peptidase M23; KEGG: dde:Dde_3784 M24/M37 family peptidase; peptidase M23 219526 8417976 Dret_0172 Desulfohalobium retbaense DSM 5692 peptidase M23 YP_003197052.1 218129 R 485915 CDS YP_003197053.1 258404311 8417977 complement(219570..219797) 1 NC_013223.1 PFAM: thiamineS protein; KEGG: dma:DMR_26290 hypothetical protein; hypothetical protein 219797 8417977 Dret_0173 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197053.1 219570 R 485915 CDS YP_003197054.1 258404312 8417978 complement(220024..220644) 1 NC_013223.1 KEGG: gur:Gura_3547 hypothetical protein; hypothetical protein 220644 8417978 Dret_0174 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197054.1 220024 R 485915 CDS YP_003197055.1 258404313 8417979 complement(220690..222426) 1 NC_013223.1 KEGG: gur:Gura_3550 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase 222426 8417979 Dret_0175 Desulfohalobium retbaense DSM 5692 Aldehyde ferredoxin oxidoreductase YP_003197055.1 220690 R 485915 CDS YP_003197056.1 258404314 8417980 223008..225368 1 NC_013223.1 PFAM: EAL domain protein; GGDEF domain containing protein; CBS domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; KEGG: dvm:DvMF_0617 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 225368 8417980 Dret_0176 Desulfohalobium retbaense DSM 5692 diguanylate cyclase/phosphodiesterase YP_003197056.1 223008 D 485915 CDS YP_003197057.1 258404315 8417981 complement(225429..225686) 1 NC_013223.1 hypothetical protein 225686 8417981 Dret_0177 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197057.1 225429 R 485915 CDS YP_003197058.1 258404316 8417982 complement(226313..227356) 1 NC_013223.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pap:PSPA7_3488 ABC transporter permease; binding-protein-dependent transport system inner membrane protein 227356 8417982 Dret_0178 Desulfohalobium retbaense DSM 5692 binding-protein-dependent transport system inner membrane protein YP_003197058.1 226313 R 485915 CDS YP_003197059.1 258404317 8417983 complement(227364..228458) 1 NC_013223.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psa:PST_2259 peptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 228458 8417983 Dret_0179 Desulfohalobium retbaense DSM 5692 binding-protein-dependent transport system inner membrane protein YP_003197059.1 227364 R 485915 CDS YP_003197060.1 258404318 8417984 complement(228572..230395) 1 NC_013223.1 PFAM: extracellular solute-binding protein family 5; KEGG: aeh:Mlg_2274 extracellular solute-binding protein; family 5 extracellular solute-binding protein 230395 8417984 Dret_0180 Desulfohalobium retbaense DSM 5692 family 5 extracellular solute-binding protein YP_003197060.1 228572 R 485915 CDS YP_003197061.1 258404319 8417985 complement(230570..231856) 1 NC_013223.1 PFAM: OmpA/MotB domain protein; Thrombospondin type 3 repeat; von Willebrand factor type A; KEGG: sat:SYN_00198 outer membrane porin protein; OmpA/MotB domain-containing protein 231856 8417985 Dret_0181 Desulfohalobium retbaense DSM 5692 OmpA/MotB domain-containing protein YP_003197061.1 230570 R 485915 CDS YP_003197062.1 258404320 8417986 232292..232891 1 NC_013223.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_2198 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 232891 8417986 Dret_0182 Desulfohalobium retbaense DSM 5692 multiple antibiotic resistance (MarC)-like protein YP_003197062.1 232292 D 485915 CDS YP_003197063.1 258404321 8417987 233075..233860 1 NC_013223.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: dds:Ddes_0652 molybdenum cofactor synthesis domain protein; molybdenum cofactor synthesis domain-containing protein 233860 8417987 Dret_0183 Desulfohalobium retbaense DSM 5692 molybdenum cofactor synthesis domain-containing protein YP_003197063.1 233075 D 485915 CDS YP_003197064.1 258404322 8417988 233826..235493 1 NC_013223.1 PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; KEGG: acp:A2cp1_0659 PAS/PAC sensor signal transduction histidine kinase; signal transduction histidine kinase, nitrogen specific, NtrB 235493 8417988 Dret_0184 Desulfohalobium retbaense DSM 5692 signal transduction histidine kinase, nitrogen specific, NtrB YP_003197064.1 233826 D 485915 CDS YP_003197065.1 258404323 8417989 235493..236632 1 NC_013223.1 PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_06688 spermidine/putrescine-binding periplasmic protein; extracellular solute-binding protein 236632 8417989 Dret_0185 Desulfohalobium retbaense DSM 5692 extracellular solute-binding protein YP_003197065.1 235493 D 485915 CDS YP_003197066.1 258404324 8417990 236698..239130 1 NC_013223.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gme:Gmet_2426 Hpt sensor hybrid histidine kinase; histidine kinase 239130 8417990 Dret_0186 Desulfohalobium retbaense DSM 5692 histidine kinase YP_003197066.1 236698 D 485915 CDS YP_003197067.1 258404325 8417991 239360..240661 1 NC_013223.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: pca:Pcar_2050 hypothetical protein; hypothetical protein 240661 8417991 Dret_0187 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197067.1 239360 D 485915 CDS YP_003197068.1 258404326 8417992 complement(240795..240956) 1 NC_013223.1 KEGG: dvl:Dvul_1412 hypothetical protein; hypothetical protein 240956 8417992 Dret_0188 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197068.1 240795 R 485915 CDS YP_003197069.1 258404327 8417993 complement(241089..241724) 1 NC_013223.1 PFAM: Peptidase S24, S26A and S26B, conserved region; CI repressor; KEGG: dma:DMR_33970 hypothetical protein; putative phage repressor 241724 8417993 Dret_0189 Desulfohalobium retbaense DSM 5692 putative phage repressor YP_003197069.1 241089 R 485915 CDS YP_003197070.1 258404328 8417994 241983..242927 1 NC_013223.1 PFAM: Patatin; KEGG: pna:Pnap_4178 patatin; patatin 242927 8417994 Dret_0190 Desulfohalobium retbaense DSM 5692 patatin YP_003197070.1 241983 D 485915 CDS YP_003197071.1 258404329 8417995 complement(243074..243553) 1 NC_013223.1 PFAM: Rubrerythrin; KEGG: dde:Dde_1214 hypothetical protein; rubrerythrin 243553 8417995 Dret_0191 Desulfohalobium retbaense DSM 5692 rubrerythrin YP_003197071.1 243074 R 485915 CDS YP_003197072.1 258404330 8417996 complement(243569..244414) 1 NC_013223.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dma:DMR_01960 putative oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein 244414 8417996 Dret_0192 Desulfohalobium retbaense DSM 5692 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_003197072.1 243569 R 485915 CDS YP_003197073.1 258404331 8417997 complement(244407..245456) 1 NC_013223.1 KEGG: dma:DMR_01950 iron-sulfur binding protein; iron-sulfur binding protein 245456 8417997 Dret_0193 Desulfohalobium retbaense DSM 5692 iron-sulfur binding protein YP_003197073.1 244407 R 485915 CDS YP_003197074.1 258404332 8417998 complement(245456..246412) 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: dvl:Dvul_0829 methyl-viologen-reducing hydrogenase, delta subunit; 4Fe-4S ferredoxin 246412 8417998 Dret_0194 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003197074.1 245456 R 485915 CDS YP_003197075.1 258404333 8417999 complement(246440..246886) 1 NC_013223.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_3527 hydrogenase, iron-sulfur cluster- binding subunit, putative; methyl-viologen-reducing hydrogenase delta subunit 246886 8417999 Dret_0195 Desulfohalobium retbaense DSM 5692 methyl-viologen-reducing hydrogenase delta subunit YP_003197075.1 246440 R 485915 CDS YP_003197076.1 258404334 8418000 complement(246853..248835) 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dma:DMR_01920 heterodisulfide reductase subunit A; 4Fe-4S ferredoxin 248835 8418000 Dret_0196 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003197076.1 246853 R 485915 CDS YP_003197077.1 258404335 8418001 complement(248921..249823) 1 NC_013223.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dde:Dde_1208 succinate dehydrogenase subunit C; CoB--CoM heterodisulfide reductase 249823 8418001 Dret_0197 Desulfohalobium retbaense DSM 5692 CoB--CoM heterodisulfide reductase YP_003197077.1 248921 R 485915 CDS YP_003197078.1 258404336 8418002 complement(249826..250467) 1 NC_013223.1 KEGG: dma:DMR_01900 heterodisulfide reductase subunit C; heterodisulfide reductase subunit C 250467 8418002 Dret_0198 Desulfohalobium retbaense DSM 5692 heterodisulfide reductase subunit C YP_003197078.1 249826 R 485915 CDS YP_003197079.1 258404337 8418003 complement(250600..251781) 1 NC_013223.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3523 alcohol dehydrogenase, iron- containing; iron-containing alcohol dehydrogenase 251781 8418003 Dret_0199 Desulfohalobium retbaense DSM 5692 iron-containing alcohol dehydrogenase YP_003197079.1 250600 R 485915 CDS YP_003197080.1 258404338 8418004 complement(252195..253544) 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: dma:DMR_02400 NtrC family two-component response regulator; two component, sigma54 specific, transcriptional regulator, Fis family 253544 8418004 Dret_0200 Desulfohalobium retbaense DSM 5692 two component, sigma54 specific, transcriptional regulator, Fis family YP_003197080.1 252195 R 485915 CDS YP_003197081.1 258404339 8418005 complement(253513..254739) 1 NC_013223.1 PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3535 histidine kinase; PAS/PAC sensor signal transduction histidine kinase 254739 8418005 Dret_0201 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor signal transduction histidine kinase YP_003197081.1 253513 R 485915 CDS YP_003197082.1 258404340 8418006 complement(254739..255881) 1 NC_013223.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3534 alcohol dehydrogenase, iron- containing; iron-containing alcohol dehydrogenase 255881 8418006 Dret_0202 Desulfohalobium retbaense DSM 5692 iron-containing alcohol dehydrogenase YP_003197082.1 254739 R 485915 CDS YP_003197083.1 258404341 8418007 complement(256121..256429) 1 NC_013223.1 PFAM: Hpt domain protein; KEGG: sat:SYN_00227 putative cytoplasmic protein; Hpt protein 256429 8418007 Dret_0203 Desulfohalobium retbaense DSM 5692 Hpt protein YP_003197083.1 256121 R 485915 CDS YP_003197084.1 258404342 8418008 complement(256461..257687) 1 NC_013223.1 PFAM: Phosphoglycerate mutase; 6-phosphofructo-2- kinase; KEGG: dde:Dde_0511 6-phosphofructo-2-kinase; phosphoglycerate mutase 257687 8418008 Dret_0204 Desulfohalobium retbaense DSM 5692 phosphoglycerate mutase YP_003197084.1 256461 R 485915 CDS YP_003197085.1 258404343 8418009 complement(257680..260949) 1 NC_013223.1 PFAM: acriflavin resistance protein; KEGG: dal:Dalk_2343 acriflavin resistance protein; acriflavin resistance protein 260949 8418009 Dret_0205 Desulfohalobium retbaense DSM 5692 acriflavin resistance protein YP_003197085.1 257680 R 485915 CDS YP_003197086.1 258404344 8418010 complement(260939..262099) 1 NC_013223.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dal:Dalk_2344 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 262099 8418010 Dret_0206 Desulfohalobium retbaense DSM 5692 RND family efflux transporter MFP subunit YP_003197086.1 260939 R 485915 CDS YP_003197087.1 258404345 8418011 complement(262116..263687) 1 NC_013223.1 PFAM: outer membrane efflux protein; KEGG: dal:Dalk_2345 outer membrane efflux protein; outer membrane efflux protein 263687 8418011 Dret_0207 Desulfohalobium retbaense DSM 5692 outer membrane efflux protein YP_003197087.1 262116 R 485915 CDS YP_003197088.1 258404346 8418012 complement(264013..264819) 1 NC_013223.1 PFAM: protein of unknown function DUF52; KEGG: dma:DMR_31670 hypothetical protein; hypothetical protein 264819 8418012 Dret_0208 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197088.1 264013 R 485915 CDS YP_003197089.1 258404347 8418013 complement(265056..265850) 1 NC_013223.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase 265850 8418013 Dret_0209 Desulfohalobium retbaense DSM 5692 putative GTP cyclohydrolase YP_003197089.1 265056 R 485915 CDS YP_003197090.1 258404348 8418014 complement(265850..266272) 1 NC_013223.1 PFAM: NikR nickel binding; CopG domain protein DNA- binding domain protein; KEGG: dvl:Dvul_0474 nickel responsive regulator; CopG family transcriptional regulator 266272 8418014 Dret_0210 Desulfohalobium retbaense DSM 5692 CopG family transcriptional regulator YP_003197090.1 265850 R 485915 CDS YP_003197091.1 258404349 8418015 complement(266405..267049) 1 NC_013223.1 PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: dma:DMR_31760 hypothetical protein; type 12 methyltransferase 267049 8418015 Dret_0211 Desulfohalobium retbaense DSM 5692 type 12 methyltransferase YP_003197091.1 266405 R 485915 CDS YP_003197092.1 258404350 8418016 complement(267049..268539) 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1510 ATPase; ABC transporter 268539 8418016 Dret_0212 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003197092.1 267049 R 485915 CDS YP_003197093.1 258404351 8418017 complement(268536..269027) 1 NC_013223.1 PFAM: phosphoribosyltransferase; KEGG: dde:Dde_1506 xanthine-guanine phosphoribosyltransferase; Xanthine phosphoribosyltransferase 269027 8418017 Dret_0213 Desulfohalobium retbaense DSM 5692 Xanthine phosphoribosyltransferase YP_003197093.1 268536 R 485915 CDS YP_003197094.1 258404352 8418018 complement(269059..269979) 1 NC_013223.1 PFAM: inner-membrane translocator; KEGG: dvm:DvMF_3028 inner-membrane translocator; inner-membrane translocator 269979 8418018 Dret_0214 Desulfohalobium retbaense DSM 5692 inner-membrane translocator YP_003197094.1 269059 R 485915 CDS YP_003197095.1 258404353 8418019 complement(270072..271139) 1 NC_013223.1 PFAM: inner-membrane translocator; KEGG: dps:DP0678 sugar ABC transporter, permease protein; inner-membrane translocator 271139 8418019 Dret_0215 Desulfohalobium retbaense DSM 5692 inner-membrane translocator YP_003197095.1 270072 R 485915 CDS YP_003197096.1 258404354 8418020 complement(271242..272306) 1 NC_013223.1 PFAM: basic membrane lipoprotein; KEGG: dvl:Dvul_1927 basic membrane lipoprotein; basic membrane lipoprotein 272306 8418020 Dret_0216 Desulfohalobium retbaense DSM 5692 basic membrane lipoprotein YP_003197096.1 271242 R 485915 CDS YP_003197097.1 258404355 8418021 272471..273442 1 NC_013223.1 PFAM: class II aldolase/adducin family protein; protein of unknown function UPF0066; KEGG: dde:Dde_3569 hypothetical protein; class II aldolase/adducin family protein 273442 8418021 Dret_0217 Desulfohalobium retbaense DSM 5692 class II aldolase/adducin family protein YP_003197097.1 272471 D 485915 CDS YP_003197098.1 258404356 8418022 complement(273519..274367) 1 NC_013223.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 274367 8418022 Dret_0218 Desulfohalobium retbaense DSM 5692 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_003197098.1 273519 R 485915 CDS YP_003197099.1 258404357 8418023 complement(274372..275535) 1 NC_013223.1 KEGG: dvu:DVU1801 hypothetical protein; hypothetical protein 275535 8418023 Dret_0219 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197099.1 274372 R 485915 CDS YP_003197100.1 258404358 8418024 complement(275536..276039) 1 NC_013223.1 KEGG: dde:Dde_3459 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 276039 8418024 Dret_0220 Desulfohalobium retbaense DSM 5692 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_003197100.1 275536 R 485915 CDS YP_003197101.1 258404359 8418025 complement(276036..277319) 1 NC_013223.1 KEGG: dde:Dde_3458 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; phosphoribosylamine/glycine ligase 277319 8418025 Dret_0221 Desulfohalobium retbaense DSM 5692 phosphoribosylamine/glycine ligase YP_003197101.1 276036 R 485915 CDS YP_003197102.1 258404360 8418026 277558..279231 1 NC_013223.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dvl:Dvul_1002 hydantoinase/oxoprolinase; hydantoinase/oxoprolinase 279231 8418026 Dret_0222 Desulfohalobium retbaense DSM 5692 hydantoinase/oxoprolinase YP_003197102.1 277558 D 485915 CDS YP_003197103.1 258404361 8418027 279225..280565 1 NC_013223.1 PFAM: histone deacetylase superfamily; KEGG: dde:Dde_2337 histone deacetylase family protein; histone deacetylase 280565 8418027 Dret_0223 Desulfohalobium retbaense DSM 5692 histone deacetylase YP_003197103.1 279225 D 485915 CDS YP_003197104.1 258404362 8418028 280673..281728 1 NC_013223.1 KEGG: dps:DP0721 hypothetical protein; hypothetical protein 281728 8418028 Dret_0224 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197104.1 280673 D 485915 CDS YP_003197105.1 258404363 8418029 282419..282637 1 NC_013223.1 KEGG: dvm:DvMF_1218 hypothetical protein; hypothetical protein 282637 8418029 Dret_0225 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197105.1 282419 D 485915 CDS YP_003197106.1 258404364 8418030 282666..285683 1 NC_013223.1 Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; Twin-arginine translocation pathway, signal sequence; KEGG: dvm:DvMF_1217 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 285683 8418030 Dret_0226 Desulfohalobium retbaense DSM 5692 formate dehydrogenase subunit alpha YP_003197106.1 282666 D 485915 CDS YP_003197107.1 258404365 8418031 285717..286445 1 NC_013223.1 KEGG: dde:Dde_0718 formate dehydrogenase, beta subunit, putative; formate dehydrogenase subunit beta 286445 8418031 Dret_0227 Desulfohalobium retbaense DSM 5692 formate dehydrogenase subunit beta YP_003197107.1 285717 D 485915 CDS YP_003197108.1 258404366 8418032 286705..287649 1 NC_013223.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dvl:Dvul_2728 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter substrate-binding protein 287649 8418032 Dret_0228 Desulfohalobium retbaense DSM 5692 phosphonate ABC transporter substrate-binding protein YP_003197108.1 286705 D 485915 CDS YP_003197109.1 258404367 8418033 287642..289747 1 NC_013223.1 KEGG: dvm:DvMF_2189 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 289747 8418033 Dret_0229 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor signal transduction histidine kinase YP_003197109.1 287642 D 485915 CDS YP_003197110.1 258404368 8418034 289716..289835 1 NC_013223.1 hypothetical protein 289835 8418034 Dret_0230 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197110.1 289716 D 485915 CDS YP_003197111.1 258404369 8418035 289916..290278 1 NC_013223.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dma:DMR_38710 response regulator receiver protein; response regulator receiver protein 290278 8418035 Dret_0231 Desulfohalobium retbaense DSM 5692 response regulator receiver protein YP_003197111.1 289916 D 485915 CDS YP_003197112.1 258404370 8418036 290664..295196 1 NC_013223.1 PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamine amidotransferase class-II; KEGG: gur:Gura_0393 glutamate synthase (ferredoxin); Glutamate synthase (ferredoxin) 295196 8418036 Dret_0232 Desulfohalobium retbaense DSM 5692 Glutamate synthase (ferredoxin) YP_003197112.1 290664 D 485915 CDS YP_003197113.1 258404371 8418037 295313..296158 1 NC_013223.1 PFAM: peptidase M48 Ste24p; KEGG: dvm:DvMF_0946 peptidase M48 Ste24p; peptidase M48 Ste24p 296158 8418037 Dret_0233 Desulfohalobium retbaense DSM 5692 peptidase M48 Ste24p YP_003197113.1 295313 D 485915 CDS YP_003197114.1 258404372 8418038 296455..297024 1 NC_013223.1 KEGG: sfu:Sfum_1145 hypothetical protein; hypothetical protein 297024 8418038 Dret_0234 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197114.1 296455 D 485915 CDS YP_003197115.1 258404373 8418039 297062..298060 1 NC_013223.1 PFAM: Nitrate reductase gamma subunit; KEGG: sfu:Sfum_1146 nitrate reductase, gamma subunit; Nitrate reductase gamma subunit 298060 8418039 Dret_0235 Desulfohalobium retbaense DSM 5692 Nitrate reductase gamma subunit YP_003197115.1 297062 D 485915 CDS YP_003197116.1 258404374 8418040 298064..299668 1 NC_013223.1 KEGG: sfu:Sfum_1147 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 299668 8418040 Dret_0236 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003197116.1 298064 D 485915 CDS YP_003197117.1 258404375 8418041 299673..300092 1 NC_013223.1 KEGG: dde:Dde_2273 cytochrome c family protein; cytochrome c family protein 300092 8418041 Dret_0237 Desulfohalobium retbaense DSM 5692 cytochrome c family protein YP_003197117.1 299673 D 485915 CDS YP_003197118.1 258404376 8418042 300085..300861 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Twin-arginine translocation pathway, signal sequence; KEGG: dvl:Dvul_1778 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 300861 8418042 Dret_0238 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003197118.1 300085 D 485915 CDS YP_003197119.1 258404377 8418043 300874..302034 1 NC_013223.1 PFAM: Polysulphide reductase NrfD; KEGG: dvu:DVU1286 reductase, transmembrane subunit, putative; polysulfide reductase NrfD 302034 8418043 Dret_0239 Desulfohalobium retbaense DSM 5692 polysulfide reductase NrfD YP_003197119.1 300874 D 485915 CDS YP_003197120.1 258404378 8418044 302392..302580 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_2120 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 302580 8418044 Dret_0240 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003197120.1 302392 D 485915 CDS YP_003197121.1 258404379 8418045 302894..303613 1 NC_013223.1 KEGG: dma:DMR_39580 hypothetical protein; hypothetical protein 303613 8418045 Dret_0241 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197121.1 302894 D 485915 CDS YP_003197122.1 258404380 8418046 303617..303964 1 NC_013223.1 KEGG: dde:Dde_3773 hypothetical protein; hypothetical protein 303964 8418046 Dret_0242 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197122.1 303617 D 485915 CDS YP_003197123.1 258404381 8418047 304057..304683 1 NC_013223.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: dma:DMR_39600 hypothetical protein; hypothetical protein 304683 8418047 Dret_0243 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197123.1 304057 D 485915 CDS YP_003197124.1 258404382 8418048 304913..306226 1 NC_013223.1 KEGG: dol:Dole_2669 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type alpha subunit 306226 8418048 Dret_0244 Desulfohalobium retbaense DSM 5692 sulfite reductase, dissimilatory-type alpha subunit YP_003197124.1 304913 D 485915 CDS YP_003197125.1 258404383 8418049 306243..307442 1 NC_013223.1 KEGG: dol:Dole_2670 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; sulfite reductase, dissimilatory-type beta subunit 307442 8418049 Dret_0245 Desulfohalobium retbaense DSM 5692 sulfite reductase, dissimilatory-type beta subunit YP_003197125.1 306243 D 485915 CDS YP_003197126.1 258404384 8418050 307505..307744 1 NC_013223.1 PFAM: Dissimilatory sulfite reductase D; KEGG: dol:Dole_2671 dissimilatory sulfite reductase D; dissimilatory sulfite reductase D 307744 8418050 Dret_0246 Desulfohalobium retbaense DSM 5692 dissimilatory sulfite reductase D YP_003197126.1 307505 D 485915 CDS YP_003197127.1 258404385 8418051 307756..309147 1 NC_013223.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; Cobyrinic acid ac-diamide synthase; KEGG: dma:DMR_03630 putative Dsr related protein; cobyrinic acid a,c-diamide synthase 309147 8418051 Dret_0247 Desulfohalobium retbaense DSM 5692 cobyrinic acid a,c-diamide synthase YP_003197127.1 307756 D 485915 CDS YP_003197128.1 258404386 8418052 309578..309922 1 NC_013223.1 KEGG: dal:Dalk_2382 hypothetical protein; hypothetical protein 309922 8418052 Dret_0248 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197128.1 309578 D 485915 CDS YP_003197129.1 258404387 8418053 310174..310824 1 NC_013223.1 KEGG: dde:Dde_3467 hypothetical protein; hypothetical protein 310824 8418053 Dret_0249 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197129.1 310174 D 485915 CDS YP_003197130.1 258404388 8418054 complement(310847..312124) 1 NC_013223.1 KEGG: dvm:DvMF_2764 hypothetical protein; hypothetical protein 312124 8418054 Dret_0250 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197130.1 310847 R 485915 CDS YP_003197131.1 258404389 8418055 312574..315234 1 NC_013223.1 TIGRFAM: valyl-tRNA synthetase; KEGG: dde:Dde_2839 valyl-tRNA synthetase; valyl-tRNA synthetase 315234 8418055 Dret_0251 Desulfohalobium retbaense DSM 5692 valyl-tRNA synthetase YP_003197131.1 312574 D 485915 CDS YP_003197132.1 258404390 8418056 315245..316780 1 NC_013223.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dvl:Dvul_2236 uroporphyrin-III C- methyltransferase; uroporphyrin-III C-methyltransferase 316780 8418056 Dret_0252 Desulfohalobium retbaense DSM 5692 uroporphyrin-III C-methyltransferase YP_003197132.1 315245 D 485915 CDS YP_003197133.1 258404391 8418057 316828..317517 1 NC_013223.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: dma:DMR_44060 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 317517 8418057 Dret_0253 Desulfohalobium retbaense DSM 5692 phosphoribosylglycinamide formyltransferase YP_003197133.1 316828 D 485915 CDS YP_003197134.1 258404392 8418058 317658..318482 1 NC_013223.1 KEGG: dma:DMR_16970 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; zinc finger Fpg domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase 318482 8418058 Dret_0254 Desulfohalobium retbaense DSM 5692 formamidopyrimidine-DNA glycosylase YP_003197134.1 317658 D 485915 CDS YP_003197135.1 258404393 8418059 complement(318494..319201) 1 NC_013223.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dvl:Dvul_0752 phosphoribosylanthranilate isomerase; N-(5 -phosphoribosyl)anthranilate isomerase 319201 8418059 Dret_0255 Desulfohalobium retbaense DSM 5692 N-(5 -phosphoribosyl)anthranilate isomerase YP_003197135.1 318494 R 485915 CDS YP_003197136.1 258404394 8418060 complement(319289..319837) 1 NC_013223.1 PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: tdn:Suden_1179 tellurite resistance protein TehB; type 12 methyltransferase 319837 8418060 Dret_0256 Desulfohalobium retbaense DSM 5692 type 12 methyltransferase YP_003197136.1 319289 R 485915 CDS YP_003197137.1 258404395 8418061 complement(319830..320102) 1 NC_013223.1 KEGG: dma:DMR_03400 hypothetical protein; hypothetical protein 320102 8418061 Dret_0257 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197137.1 319830 R 485915 CDS YP_003197138.1 258404396 8418062 complement(320167..320829) 1 NC_013223.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dal:Dalk_1233 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase 320829 8418062 Dret_0258 Desulfohalobium retbaense DSM 5692 HAD-superfamily hydrolase YP_003197138.1 320167 R 485915 CDS YP_003197139.1 258404397 8418063 complement(320851..321921) 1 NC_013223.1 PFAM: protein of unknown function UPF0118; KEGG: dol:Dole_2006 hypothetical protein; hypothetical protein 321921 8418063 Dret_0259 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197139.1 320851 R 485915 CDS YP_003197140.1 258404398 8418064 complement(322105..323952) 1 NC_013223.1 PFAM: Carboxylyase-related protein; KEGG: dvu:DVU2320 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein; Carboxylyase-like protein 323952 8418064 Dret_0260 Desulfohalobium retbaense DSM 5692 Carboxylyase-like protein YP_003197140.1 322105 R 485915 CDS YP_003197141.1 258404399 8418065 complement(324013..324411) 1 NC_013223.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: dat:HRM2_32730 FsxA; FxsA cytoplasmic membrane protein 324411 8418065 Dret_0261 Desulfohalobium retbaense DSM 5692 FxsA cytoplasmic membrane protein YP_003197141.1 324013 R 485915 CDS YP_003197142.1 258404400 8418066 complement(324577..324852) 1 NC_013223.1 hypothetical protein 324852 8418066 Dret_0262 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197142.1 324577 R 485915 CDS YP_003197143.1 258404401 8418067 complement(324962..325531) 1 NC_013223.1 PFAM: isochorismatase hydrolase; KEGG: ppd:Ppro_2976 isochorismatase hydrolase; isochorismatase hydrolase 325531 8418067 Dret_0263 Desulfohalobium retbaense DSM 5692 isochorismatase hydrolase YP_003197143.1 324962 R 485915 CDS YP_003197144.1 258404402 8418068 complement(325641..326855) 1 NC_013223.1 KEGG: dma:DMR_33050 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD- superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; amino acid-binding ACT domain protein; HAD- superfamily hydrolase subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB 326855 8418068 Dret_0264 Desulfohalobium retbaense DSM 5692 phosphoserine phosphatase SerB YP_003197144.1 325641 R 485915 CDS YP_003197145.1 258404403 8418069 327349..328302 1 NC_013223.1 KEGG: dde:Dde_2137 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA 328302 8418069 Dret_0265 Desulfohalobium retbaense DSM 5692 hydrogenase (NiFe) small subunit HydA YP_003197145.1 327349 D 485915 CDS YP_003197146.1 258404404 8418070 328370..330070 1 NC_013223.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2138 periplasmic (NiFe) hydrogenase, large subunit, isozyme 1; nickel-dependent hydrogenase large subunit 330070 8418070 Dret_0266 Desulfohalobium retbaense DSM 5692 nickel-dependent hydrogenase large subunit YP_003197146.1 328370 D 485915 CDS YP_003197147.1 258404405 8418071 330432..330929 1 NC_013223.1 TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dvl:Dvul_1244 hydrogenase expression/formation protein; hydrogenase expression/formation protein 330929 8418071 Dret_0267 Desulfohalobium retbaense DSM 5692 hydrogenase expression/formation protein YP_003197147.1 330432 D 485915 CDS YP_003197148.1 258404406 8418072 330945..331181 1 NC_013223.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dds:Ddes_0384 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF 331181 8418072 Dret_0268 Desulfohalobium retbaense DSM 5692 hydrogenase assembly chaperone HypC/HupF YP_003197148.1 330945 D 485915 CDS YP_003197149.1 258404407 8418073 331286..332707 1 NC_013223.1 KEGG: dma:DMR_18000 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose- 6-phosphate isomerase 332707 8418073 Dret_0269 Desulfohalobium retbaense DSM 5692 mannose-1-phosphate guanylyltransferase/mannose- 6-phosphate isomerase YP_003197149.1 331286 D 485915 CDS YP_003197150.1 258404408 8418074 333097..333633 1 NC_013223.1 KEGG: dde:Dde_2932 hypothetical protein; hypothetical protein 333633 8418074 Dret_0270 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197150.1 333097 D 485915 CDS YP_003197151.1 258404409 8418075 333651..335717 1 NC_013223.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dde:Dde_2933 molybdopterin oxidoreductase, molybdopterin-binding subunit, putative; molybdopterin oxidoreductase 335717 8418075 Dret_0271 Desulfohalobium retbaense DSM 5692 molybdopterin oxidoreductase YP_003197151.1 333651 D 485915 CDS YP_003197152.1 258404410 8418076 335730..336506 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2270 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 336506 8418076 Dret_0272 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003197152.1 335730 D 485915 CDS YP_003197153.1 258404411 8418077 336510..337739 1 NC_013223.1 KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit, putative; molybdopterin oxidoreductase, transmembrane subunit 337739 8418077 Dret_0273 Desulfohalobium retbaense DSM 5692 molybdopterin oxidoreductase, transmembrane subunit YP_003197153.1 336510 D 485915 CDS YP_003197154.1 258404412 8418078 complement(337891..338382) 1 NC_013223.1 KEGG: bja:bll7773 hypothetical protein; hypothetical protein 338382 8418078 Dret_0274 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197154.1 337891 R 485915 CDS YP_003197155.1 258404413 8418079 complement(338393..338953) 1 NC_013223.1 KEGG: hha:Hhal_1487 hypothetical protein; hypothetical protein 338953 8418079 Dret_0275 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197155.1 338393 R 485915 CDS YP_003197156.1 258404414 8418080 339230..340450 1 NC_013223.1 PFAM: peptidase M29 aminopeptidase II; KEGG: dol:Dole_2013 peptidase M29 aminopeptidase II; peptidase M29 aminopeptidase II 340450 8418080 Dret_0276 Desulfohalobium retbaense DSM 5692 peptidase M29 aminopeptidase II YP_003197156.1 339230 D 485915 CDS YP_003197157.1 258404415 8418081 340546..341523 1 NC_013223.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dma:DMR_31000 hypothetical membrane protein; hypothetical protein 341523 8418081 Dret_0277 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197157.1 340546 D 485915 CDS YP_003197158.1 258404416 8418082 341578..342225 1 NC_013223.1 KEGG: dvu:DVU0579 molybdopterin-guanine dinucleotide biosynthesis protein A, putative; molybdopterin-guanine dinucleotide biosynthesis protein A 342225 8418082 Dret_0278 Desulfohalobium retbaense DSM 5692 molybdopterin-guanine dinucleotide biosynthesis protein A YP_003197158.1 341578 D 485915 CDS YP_003197159.1 258404417 8418083 342354..343238 1 NC_013223.1 PFAM: formate dehydrogenase accessory protein; KEGG: dde:Dde_0706 formate dehydrogenase formation protein FdhE, putative; formate dehydrogenase accessory protein 343238 8418083 Dret_0279 Desulfohalobium retbaense DSM 5692 formate dehydrogenase accessory protein YP_003197159.1 342354 D 485915 CDS YP_003197160.1 258404418 8418084 343344..344528 1 NC_013223.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mca:MCA2125 aminotransferase; Glutamine--scyllo-inositol transaminase 344528 8418084 Dret_0280 Desulfohalobium retbaense DSM 5692 Glutamine--scyllo-inositol transaminase YP_003197160.1 343344 D 485915 CDS YP_003197161.1 258404419 8418085 344557..344709 1 NC_013223.1 hypothetical protein 344709 8418085 Dret_0281 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197161.1 344557 D 485915 CDS YP_003197162.1 258404420 8418086 344824..345876 1 NC_013223.1 PFAM: glycosyl transferase family 9; KEGG: dvu:DVU0998 heptosyltransferase family protein; glycosyl transferase family protein 345876 8418086 Dret_0282 Desulfohalobium retbaense DSM 5692 glycosyl transferase family protein YP_003197162.1 344824 D 485915 CDS YP_003197163.1 258404421 8418087 345965..349153 1 NC_013223.1 PFAM: SNF2-related protein; zinc finger SWIM domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dvm:DvMF_0789 non-specific serine/threonine protein kinase; SNF2-like protein 349153 8418087 Dret_0283 Desulfohalobium retbaense DSM 5692 SNF2-like protein YP_003197163.1 345965 D 485915 CDS YP_003197164.1 258404422 8418088 complement(349660..350223) 1 NC_013223.1 KEGG: mca:MCA0837 hypothetical protein; hypothetical protein 350223 8418088 Dret_0284 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197164.1 349660 R 485915 CDS YP_003197165.1 258404423 8418089 complement(350712..352922) 1 NC_013223.1 PFAM: Oligosaccharyl transferase STT3 subunit; KEGG: dvl:Dvul_1810 hypothetical protein; oligosaccharyl transferase STT3 subunit 352922 8418089 Dret_0285 Desulfohalobium retbaense DSM 5692 oligosaccharyl transferase STT3 subunit YP_003197165.1 350712 R 485915 CDS YP_003197166.1 258404424 8418090 complement(352968..353762) 1 NC_013223.1 KEGG: smd:Smed_4582 sulfotransferase; hypothetical protein 353762 8418090 Dret_0286 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197166.1 352968 R 485915 CDS YP_003197167.1 258404425 8418091 complement(354987..356234) 1 NC_013223.1 PFAM: O-antigen polymerase; KEGG: dat:HRM2_25350 hypothetical protein; O-antigen polymerase 356234 8418091 Dret_0287 Desulfohalobium retbaense DSM 5692 O-antigen polymerase YP_003197167.1 354987 R 485915 CDS YP_003197168.1 258404426 8418092 complement(356239..357354) 1 NC_013223.1 PFAM: glycosyl transferase group 1; KEGG: geo:Geob_2965 glycosyl transferase group 1; group 1 glycosyl transferase 357354 8418092 Dret_0288 Desulfohalobium retbaense DSM 5692 group 1 glycosyl transferase YP_003197168.1 356239 R 485915 CDS YP_003197169.1 258404427 8418093 complement(357323..359125) 1 NC_013223.1 KEGG: dde:Dde_1960 lipid A export ATP- binding/permease protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 359125 8418093 Dret_0289 Desulfohalobium retbaense DSM 5692 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA YP_003197169.1 357323 R 485915 CDS YP_003197170.1 258404428 8418094 complement(359338..360306) 1 NC_013223.1 PFAM: polysaccharide deacetylase; KEGG: smt:Smal_2837 polysaccharide deacetylase; polysaccharide deacetylase 360306 8418094 Dret_0290 Desulfohalobium retbaense DSM 5692 polysaccharide deacetylase YP_003197170.1 359338 R 485915 CDS YP_003197171.1 258404429 8418095 complement(360297..361427) 1 NC_013223.1 PFAM: glycosyl transferase group 1; KEGG: dvu:DVU2635 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 361427 8418095 Dret_0291 Desulfohalobium retbaense DSM 5692 group 1 glycosyl transferase YP_003197171.1 360297 R 485915 CDS YP_003197172.1 258404430 8418096 complement(361500..363233) 1 NC_013223.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_2715 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 363233 8418096 Dret_0292 Desulfohalobium retbaense DSM 5692 single-stranded-DNA-specific exonuclease RecJ YP_003197172.1 361500 R 485915 CDS YP_003197173.1 258404431 8418097 complement(363508..364209) 1 NC_013223.1 KEGG: dvl:Dvul_2083 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 364209 8418097 Dret_0293 Desulfohalobium retbaense DSM 5692 orotidine 5'-phosphate decarboxylase YP_003197173.1 363508 R 485915 CDS YP_003197174.1 258404432 8418098 complement(364202..364840) 1 NC_013223.1 KEGG: dvl:Dvul_2084 guanylate kinase; TIGRFAM: guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase 364840 8418098 Dret_0294 Desulfohalobium retbaense DSM 5692 guanylate kinase YP_003197174.1 364202 R 485915 CDS YP_003197175.1 258404433 8418099 complement(364827..365093) 1 NC_013223.1 PFAM: protein of unknown function DUF370; KEGG: dvm:DvMF_1139 hypothetical protein; hypothetical protein 365093 8418099 Dret_0295 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197175.1 364827 R 485915 CDS YP_003197176.1 258404434 8418100 complement(365270..366151) 1 NC_013223.1 PFAM: domain of unknown function DUF1732; YicC domain protein; KEGG: dvl:Dvul_2086 hypothetical protein; hypothetical protein 366151 8418100 Dret_0296 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197176.1 365270 R 485915 CDS YP_003197177.1 258404435 8418101 complement(366376..366948) 1 NC_013223.1 KEGG: dma:DMR_32830 hypothetical protein; hypothetical protein 366948 8418101 Dret_0297 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197177.1 366376 R 485915 CDS YP_003197178.1 258404436 8418102 complement(366998..368293) 1 NC_013223.1 KEGG: dde:Dde_2722 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein 368293 8418102 Dret_0298 Desulfohalobium retbaense DSM 5692 MiaB family RNA modification protein YP_003197178.1 366998 R 485915 CDS YP_003197179.1 258404437 8418103 complement(368298..369347) 1 NC_013223.1 TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; PFAM: tRNA methyl transferase-like; KEGG: dma:DMR_17320 putative tRNA uridine- sulfurtransferase; tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase 369347 8418103 Dret_0299 Desulfohalobium retbaense DSM 5692 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase YP_003197179.1 368298 R 485915 CDS YP_003197180.1 258404438 8418104 complement(369509..370978) 1 NC_013223.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 370978 gatA 8418104 gatA Desulfohalobium retbaense DSM 5692 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_003197180.1 369509 R 485915 CDS YP_003197181.1 258404439 8418105 complement(371048..371332) 1 NC_013223.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: dma:DMR_17350 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; glutamyl-tRNA(Gln) amidotransferase subunit C 371332 8418105 Dret_0301 Desulfohalobium retbaense DSM 5692 glutamyl-tRNA(Gln) amidotransferase subunit C YP_003197181.1 371048 R 485915 CDS YP_003197182.1 258404440 8418106 complement(371475..373592) 1 NC_013223.1 KEGG: dvl:Dvul_2167 hypothetical protein; hypothetical protein 373592 8418106 Dret_0302 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197182.1 371475 R 485915 CDS YP_003197183.1 258404441 8418107 complement(374128..376041) 1 NC_013223.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 376041 dnaK 8418107 dnaK Desulfohalobium retbaense DSM 5692 molecular chaperone DnaK YP_003197183.1 374128 R 485915 CDS YP_003197184.1 258404442 8418108 complement(376122..376709) 1 NC_013223.1 PFAM: GrpE protein; KEGG: dde:Dde_1025 heat shock protein GrpE; GrpE protein HSP-70 cofactor 376709 8418108 Dret_0304 Desulfohalobium retbaense DSM 5692 GrpE protein HSP-70 cofactor YP_003197184.1 376122 R 485915 CDS YP_003197185.1 258404443 8418109 complement(376849..377877) 1 NC_013223.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: dde:Dde_1026 heat-inducible transcription repressor HrcA; heat-inducible transcription repressor HrcA 377877 8418109 Dret_0305 Desulfohalobium retbaense DSM 5692 heat-inducible transcription repressor HrcA YP_003197185.1 376849 R 485915 CDS YP_003197186.1 258404444 8418110 complement(377898..378779) 1 NC_013223.1 KEGG: dvl:Dvul_1705 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; NAD- dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase 378779 8418110 Dret_0306 Desulfohalobium retbaense DSM 5692 dTDP-4-dehydrorhamnose reductase YP_003197186.1 377898 R 485915 CDS YP_003197187.1 258404445 8418111 complement(378766..379785) 1 NC_013223.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; KEGG: dvl:Dvul_1704 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 379785 8418111 Dret_0307 Desulfohalobium retbaense DSM 5692 dTDP-glucose 4,6-dehydratase YP_003197187.1 378766 R 485915 CDS YP_003197188.1 258404446 8418112 complement(379955..380884) 1 NC_013223.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: dde:Dde_2409 K+-dependent Na+/Ca+ exchanger related-protein; CaCA family Na+/Ca+ antiporter 380884 8418112 Dret_0308 Desulfohalobium retbaense DSM 5692 CaCA family Na+/Ca+ antiporter YP_003197188.1 379955 R 485915 CDS YP_003197189.1 258404447 8418113 complement(380952..382001) 1 NC_013223.1 KEGG: dma:DMR_43250 hypothetical protein; hypothetical protein 382001 8418113 Dret_0309 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197189.1 380952 R 485915 CDS YP_003197190.1 258404448 8418114 382259..383326 1 NC_013223.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 383326 recA 8418114 recA Desulfohalobium retbaense DSM 5692 recombinase A YP_003197190.1 382259 D 485915 CDS YP_003197191.1 258404449 8418115 383393..386035 1 NC_013223.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 386035 alaS 8418115 alaS Desulfohalobium retbaense DSM 5692 alanyl-tRNA synthetase YP_003197191.1 383393 D 485915 CDS YP_003197192.1 258404450 8418116 386177..387031 1 NC_013223.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dde:Dde_1251 ferredoxin-NADP(+) reductase subunit alpha; ferredoxin-NADP(+) reductase subunit alpha 387031 8418116 Dret_0312 Desulfohalobium retbaense DSM 5692 ferredoxin-NADP(+) reductase subunit alpha YP_003197192.1 386177 D 485915 CDS YP_003197193.1 258404451 8418117 387024..388445 1 NC_013223.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 388445 8418117 Dret_0313 Desulfohalobium retbaense DSM 5692 putative oxidoreductase YP_003197193.1 387024 D 485915 CDS YP_003197194.1 258404452 8418118 388568..389722 1 NC_013223.1 PFAM: PSP1 domain protein; KEGG: dma:DMR_08030 hypothetical protein; PSP1 domain-containing protein 389722 8418118 Dret_0314 Desulfohalobium retbaense DSM 5692 PSP1 domain-containing protein YP_003197194.1 388568 D 485915 CDS YP_003197195.1 258404453 8418119 389990..391936 1 NC_013223.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 391936 8418119 Dret_0315 Desulfohalobium retbaense DSM 5692 methionyl-tRNA synthetase YP_003197195.1 389990 D 485915 CDS YP_003197196.1 258404454 8418120 complement(392380..394557) 1 NC_013223.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Miro domain protein; Ferrous iron transport B domain protein; KEGG: dvm:DvMF_1015 ferrous iron transport protein B; ferrous iron transport protein B 394557 8418120 Dret_0316 Desulfohalobium retbaense DSM 5692 ferrous iron transport protein B YP_003197196.1 392380 R 485915 CDS YP_003197197.1 258404455 8418121 complement(394550..394804) 1 NC_013223.1 PFAM: FeoA family protein; KEGG: dma:DMR_19560 ferrous iron transport protein A; FeoA family protein 394804 8418121 Dret_0317 Desulfohalobium retbaense DSM 5692 FeoA family protein YP_003197197.1 394550 R 485915 CDS YP_003197198.1 258404456 8418122 complement(394797..394982) 1 NC_013223.1 hypothetical protein 394982 8418122 Dret_0318 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197198.1 394797 R 485915 CDS YP_003197199.1 258404457 8418123 complement(395036..395272) 1 NC_013223.1 PFAM: FeoA family protein; KEGG: dma:DMR_19550 putative ferrous iron transport protein; FeoA family protein 395272 8418123 Dret_0319 Desulfohalobium retbaense DSM 5692 FeoA family protein YP_003197199.1 395036 R 485915 CDS YP_003197200.1 258404458 8418124 395568..398804 1 NC_013223.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide synthetase; RimK domain protein ATP-grasp; MGS domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: dma:DMR_22160 carbamoyl-phosphate synthase large chain; carbamoyl-phosphate synthase large subunit 398804 8418124 Dret_0320 Desulfohalobium retbaense DSM 5692 carbamoyl-phosphate synthase large subunit YP_003197200.1 395568 D 485915 CDS YP_003197201.1 258404459 8418125 399414..400799 1 NC_013223.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: dma:DMR_22150 amidophosphoribosyltransferase; amidophosphoribosyltransferase 400799 8418125 Dret_0321 Desulfohalobium retbaense DSM 5692 amidophosphoribosyltransferase YP_003197201.1 399414 D 485915 CDS YP_003197202.1 258404460 8418126 400811..401833 1 NC_013223.1 KEGG: dvm:DvMF_2308 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; SMART: CBS domain containing protein; KpsF/GutQ family protein 401833 8418126 Dret_0322 Desulfohalobium retbaense DSM 5692 KpsF/GutQ family protein YP_003197202.1 400811 D 485915 CDS YP_003197203.1 258404461 8418127 401988..403574 1 NC_013223.1 KEGG: dde:Dde_3122 dolichyl-phosphate-mannose- protein mannosyltransferase family protein; dolichyl-phosphate-mannose-protein mannosyltransferase family protein 403574 8418127 Dret_0323 Desulfohalobium retbaense DSM 5692 dolichyl-phosphate-mannose-protein mannosyltransferase family protein YP_003197203.1 401988 D 485915 CDS YP_003197204.1 258404462 8418128 403985..406393 1 NC_013223.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: dde:Dde_3124 penicillin-binding protein 1A; penicillin-binding protein 406393 8418128 Dret_0324 Desulfohalobium retbaense DSM 5692 penicillin-binding protein YP_003197204.1 403985 D 485915 CDS YP_003197205.1 258404463 8418129 406390..407367 1 NC_013223.1 PFAM: nucleoside recognition domain protein; KEGG: sfu:Sfum_3415 nucleoside recognition domain protein; nucleoside recognition domain-containing protein 407367 8418129 Dret_0325 Desulfohalobium retbaense DSM 5692 nucleoside recognition domain-containing protein YP_003197205.1 406390 D 485915 CDS YP_003197206.1 258404464 8418130 complement(407494..407847) 1 NC_013223.1 PFAM: macrophage migration inhibitory factor family protein; KEGG: mca:MCA2795 phenylpyruvate tautomerase, putative; macrophage migration inhibitory factor family protein 407847 8418130 Dret_0326 Desulfohalobium retbaense DSM 5692 macrophage migration inhibitory factor family protein YP_003197206.1 407494 R 485915 CDS YP_003197207.1 258404465 8418131 complement(408030..410000) 1 NC_013223.1 PFAM: peptidase U32; KEGG: dvl:Dvul_0074 peptidase U32; peptidase U32 410000 8418131 Dret_0327 Desulfohalobium retbaense DSM 5692 peptidase U32 YP_003197207.1 408030 R 485915 CDS YP_003197208.1 258404466 8418132 410325..410792 1 NC_013223.1 PFAM: thioesterase superfamily protein; KEGG: sfu:Sfum_3091 uncharacterized domain 1; thioesterase superfamily protein 410792 8418132 Dret_0328 Desulfohalobium retbaense DSM 5692 thioesterase superfamily protein YP_003197208.1 410325 D 485915 CDS YP_003197209.1 258404467 8418133 410939..412069 1 NC_013223.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase 412069 8418133 Dret_0329 Desulfohalobium retbaense DSM 5692 cyclopropane-fatty-acyl-phospholipid synthase YP_003197209.1 410939 D 485915 CDS YP_003197210.1 258404468 8418134 412467..414062 1 NC_013223.1 KEGG: cvi:CV_0964 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 414062 8418134 Dret_0330 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor-containing diguanylate cyclase YP_003197210.1 412467 D 485915 CDS YP_003197211.1 258404469 8418135 414405..416594 1 NC_013223.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 416594 8418135 Dret_0331 Desulfohalobium retbaense DSM 5692 malate synthase G YP_003197211.1 414405 D 485915 CDS YP_003197212.1 258404470 8418136 416812..417234 1 NC_013223.1 PFAM: protein of unknown function DUF101; KEGG: mca:MCA0196 hypothetical protein; hypothetical protein 417234 8418136 Dret_0332 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197212.1 416812 D 485915 CDS YP_003197213.1 258404471 8418137 417251..418681 1 NC_013223.1 PFAM: protein of unknown function UPF0027; KEGG: tgr:Tgr7_1950 protein of unknown function UPF0027; hypothetical protein 418681 8418137 Dret_0333 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197213.1 417251 D 485915 CDS YP_003197214.1 258404472 8418138 418989..419549 1 NC_013223.1 KEGG: bba:Bd3498 hypothetical protein; hypothetical protein 419549 8418138 Dret_0334 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197214.1 418989 D 485915 CDS YP_003197215.1 258404473 8418139 419811..420101 1 NC_013223.1 KEGG: dvm:DvMF_2059 hypothetical protein; hypothetical protein 420101 8418139 Dret_0335 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197215.1 419811 D 485915 CDS YP_003197216.1 258404474 8418140 420126..420269 1 NC_013223.1 PFAM: Entericidin EcnAB; entericidin EcnAB 420269 8418140 Dret_0336 Desulfohalobium retbaense DSM 5692 entericidin EcnAB YP_003197216.1 420126 D 485915 CDS YP_003197217.1 258404475 8418141 420372..420509 1 NC_013223.1 KEGG: tgr:Tgr7_1149 hypothetical protein; hypothetical protein 420509 8418141 Dret_0337 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197217.1 420372 D 485915 CDS YP_003197218.1 258404476 8418142 complement(420623..421369) 1 NC_013223.1 PFAM: protein of unknown function DUF364; KEGG: sfu:Sfum_0019 conserved hypothetical cytosolic protein; hypothetical protein 421369 8418142 Dret_0338 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197218.1 420623 R 485915 CDS YP_003197219.1 258404477 8418143 421659..422228 1 NC_013223.1 PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: dma:DMR_28800 GAF domain protein; putative phytochrome sensor protein 422228 8418143 Dret_0339 Desulfohalobium retbaense DSM 5692 putative phytochrome sensor protein YP_003197219.1 421659 D 485915 CDS YP_003197220.1 258404478 8418144 422243..423259 1 NC_013223.1 KEGG: dvm:DvMF_1440 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 423259 8418144 Dret_0340 Desulfohalobium retbaense DSM 5692 glyceraldehyde-3-phosphate dehydrogenase, type I YP_003197220.1 422243 D 485915 CDS YP_003197221.1 258404479 8418146 423782..425008 1 NC_013223.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 425008 8418146 Dret_0341 Desulfohalobium retbaense DSM 5692 transposase IS204/IS1001/IS1096/IS1165 family protein YP_003197221.1 423782 D 485915 CDS YP_003197222.1 258404480 8418147 complement(425126..427225) 1 NC_013223.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_0094 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 427225 8418147 Dret_0342 Desulfohalobium retbaense DSM 5692 methyl-accepting chemotaxis sensory transducer YP_003197222.1 425126 R 485915 CDS YP_003197223.1 258404481 8418148 427906..428847 1 NC_013223.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_0145 putative glycine betaine/L- proline ABC transporter, solute-binding protein; glycine/betaine ABC transporter substrate-binding protein 428847 8418148 Dret_0343 Desulfohalobium retbaense DSM 5692 glycine/betaine ABC transporter substrate-binding protein YP_003197223.1 427906 D 485915 CDS YP_003197224.1 258404482 8418149 428954..429826 1 NC_013223.1 PFAM: protein of unknown function DUF849; KEGG: bxe:Bxe_B0827 hypothetical protein; hypothetical protein 429826 8418149 Dret_0344 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197224.1 428954 D 485915 CDS YP_003197225.1 258404483 8418150 429871..430854 1 NC_013223.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: csa:Csal_3173 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 430854 8418150 Dret_0345 Desulfohalobium retbaense DSM 5692 3-hydroxyacyl-CoA dehydrogenase YP_003197225.1 429871 D 485915 CDS YP_003197226.1 258404484 8418151 430838..431317 1 NC_013223.1 KEGG: ppg:PputGB1_0325 hypothetical protein; hypothetical protein 431317 8418151 Dret_0346 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197226.1 430838 D 485915 CDS YP_003197227.1 258404485 8418152 complement(431346..432314) 1 NC_013223.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: Helix-turn-helix, AraC domain; KEGG: pap:PSPA7_6176 putative transcriptional regulator; AraC family transcriptional regulator 432314 8418152 Dret_0347 Desulfohalobium retbaense DSM 5692 AraC family transcriptional regulator YP_003197227.1 431346 R 485915 CDS YP_003197228.1 258404486 8418153 432648..433547 1 NC_013223.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: csa:Csal_0039 protein of unknown function DUF6, transmembrane; hypothetical protein 433547 8418153 Dret_0348 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197228.1 432648 D 485915 CDS YP_003197229.1 258404487 8418154 complement(433942..436221) 1 NC_013223.1 PFAM: MscS Mechanosensitive ion channel; KEGG: csa:Csal_3104 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 436221 8418154 Dret_0349 Desulfohalobium retbaense DSM 5692 mechanosensitive ion channel MscS YP_003197229.1 433942 R 485915 CDS YP_003197230.1 258404488 8418155 complement(436506..437267) 1 NC_013223.1 PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: dol:Dole_0585 methyltransferase type 11; type 11 methyltransferase 437267 8418155 Dret_0350 Desulfohalobium retbaense DSM 5692 type 11 methyltransferase YP_003197230.1 436506 R 485915 CDS YP_003197231.1 258404489 8418156 complement(437518..438366) 1 NC_013223.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: csa:Csal_2886 substrate-binding region of ABC- type glycine betaine transport system; glycine/betaine ABC transporter substrate-binding protein 438366 8418156 Dret_0351 Desulfohalobium retbaense DSM 5692 glycine/betaine ABC transporter substrate-binding protein YP_003197231.1 437518 R 485915 CDS YP_003197232.1 258404490 8418157 complement(438513..439820) 1 NC_013223.1 PFAM: Radical SAM domain protein; KEGG: dat:HRM2_30680 hypothetical protein; radical SAM protein 439820 8418157 Dret_0352 Desulfohalobium retbaense DSM 5692 radical SAM protein YP_003197232.1 438513 R 485915 CDS YP_003197233.1 258404491 8418158 440172..440741 1 NC_013223.1 hypothetical protein 440741 8418158 Dret_0353 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197233.1 440172 D 485915 CDS YP_003197234.1 258404492 8418159 complement(440738..441997) 1 NC_013223.1 PFAM: peptidase M24; KEGG: csa:Csal_2884 peptidase M24; peptidase M24 441997 8418159 Dret_0354 Desulfohalobium retbaense DSM 5692 peptidase M24 YP_003197234.1 440738 R 485915 CDS YP_003197235.1 258404493 8418160 442579..443475 1 NC_013223.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dvl:Dvul_2672 LysR family transcriptional regulator; LysR family transcriptional regulator 443475 8418160 Dret_0355 Desulfohalobium retbaense DSM 5692 LysR family transcriptional regulator YP_003197235.1 442579 D 485915 CDS YP_003197236.1 258404494 8418161 443798..445909 1 NC_013223.1 PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: sun:SUN_0722 transcription accessory protein; Tex-like protein 445909 8418161 Dret_0356 Desulfohalobium retbaense DSM 5692 Tex-like protein YP_003197236.1 443798 D 485915 CDS YP_003197237.1 258404495 8418162 complement(446020..446910) 1 NC_013223.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: sat:SYN_03766 hypothetical protein; lipopolysaccharide biosynthesis protein 446910 8418162 Dret_0357 Desulfohalobium retbaense DSM 5692 lipopolysaccharide biosynthesis protein YP_003197237.1 446020 R 485915 CDS YP_003197238.1 258404496 8418163 447158..447475 1 NC_013223.1 PFAM: regulatory protein MarR; KEGG: afr:AFE_0075 hypothetical protein; transcriptional regulator, MarR family 447475 8418163 Dret_0358 Desulfohalobium retbaense DSM 5692 transcriptional regulator, MarR family YP_003197238.1 447158 D 485915 CDS YP_003197239.1 258404497 8418164 447487..447639 1 NC_013223.1 hypothetical protein 447639 8418164 Dret_0359 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197239.1 447487 D 485915 CDS YP_003197240.1 258404498 8418165 448343..448939 1 NC_013223.1 KEGG: psa:PST_1470 death-on-curing family protein; death-on-curing family protein 448939 8418165 Dret_0360 Desulfohalobium retbaense DSM 5692 death-on-curing family protein YP_003197240.1 448343 D 485915 CDS YP_003197241.1 258404499 8418166 449376..450194 1 NC_013223.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: dol:Dole_2032 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 450194 8418166 Dret_0361 Desulfohalobium retbaense DSM 5692 3'(2'),5'-bisphosphate nucleotidase YP_003197241.1 449376 D 485915 CDS YP_003197242.1 258404500 8418167 450478..450957 1 NC_013223.1 hypothetical protein 450957 8418167 Dret_0362 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197242.1 450478 D 485915 CDS YP_003197243.1 258404501 8418168 451046..451249 1 NC_013223.1 KEGG: eba:p1B35 hypothetical protein; hypothetical protein 451249 8418168 Dret_0363 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197243.1 451046 D 485915 CDS YP_003197244.1 258404502 8418169 451246..451437 1 NC_013223.1 PFAM: Protein of unknown function DUF2283; KEGG: pna:Pnap_1349 hypothetical protein; hypothetical protein 451437 8418169 Dret_0364 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197244.1 451246 D 485915 CDS YP_003197245.1 258404503 8418170 451450..451566 1 NC_013223.1 hypothetical protein 451566 8418170 Dret_0365 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197245.1 451450 D 485915 CDS YP_003197246.1 258404504 8418171 451569..452123 1 NC_013223.1 hypothetical protein 452123 8418171 Dret_0366 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197246.1 451569 D 485915 CDS YP_003197247.1 258404505 8418172 452185..453645 1 NC_013223.1 KEGG: dal:Dalk_1490 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-6-phosphate isomerase type II; mannose-1-phosphate guanylyltransferase/mannose- 6-phosphate isomerase 453645 8418172 Dret_0367 Desulfohalobium retbaense DSM 5692 mannose-1-phosphate guanylyltransferase/mannose- 6-phosphate isomerase YP_003197247.1 452185 D 485915 CDS YP_003197248.1 258404506 8418173 454038..454580 1 NC_013223.1 hypothetical protein 454580 8418173 Dret_0368 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197248.1 454038 D 485915 CDS YP_003197249.1 258404507 8418174 455122..456078 1 NC_013223.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: dma:DMR_38190 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 456078 8418174 Dret_0369 Desulfohalobium retbaense DSM 5692 NAD-dependent epimerase/dehydratase YP_003197249.1 455122 D 485915 CDS YP_003197250.1 258404508 8418176 complement(456526..457044) 1 NC_013223.1 KEGG: dat:HRM2_19930 hypothetical protein; hypothetical protein 457044 8418176 Dret_0371 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197250.1 456526 R 485915 CDS YP_003197251.1 258404509 8418177 complement(457124..458524) 1 NC_013223.1 KEGG: dat:HRM2_19930 hypothetical protein; hypothetical protein 458524 8418177 Dret_0372 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197251.1 457124 R 485915 CDS YP_003197252.1 258404510 8418178 complement(458627..459853) 1 NC_013223.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 459853 8418178 Dret_0373 Desulfohalobium retbaense DSM 5692 transposase IS204/IS1001/IS1096/IS1165 family protein YP_003197252.1 458627 R 485915 CDS YP_003197253.1 258404511 8418179 complement(459937..460818) 1 NC_013223.1 KEGG: dat:HRM2_19930 hypothetical protein; hypothetical protein 460818 8418179 Dret_0374 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197253.1 459937 R 485915 CDS YP_003197254.1 258404512 8418180 461071..461553 1 NC_013223.1 KEGG: ppr:PBPRA2370 putative transposase; putative transposase 461553 8418180 Dret_0375 Desulfohalobium retbaense DSM 5692 putative transposase YP_003197254.1 461071 D 485915 CDS YP_003197255.1 258404513 8418181 461619..462596 1 NC_013223.1 PFAM: Integrase catalytic region; KEGG: ppr:PBPRB1457 transposase; integrase catalytic subunit 462596 8418181 Dret_0376 Desulfohalobium retbaense DSM 5692 integrase catalytic subunit YP_003197255.1 461619 D 485915 CDS YP_003197256.1 258404514 8418182 462978..464114 1 NC_013223.1 PFAM: glycosyl transferase group 1; KEGG: gur:Gura_3776 glycosyl transferase, group 1; group 1 glycosyl transferase 464114 8418182 Dret_0377 Desulfohalobium retbaense DSM 5692 group 1 glycosyl transferase YP_003197256.1 462978 D 485915 CDS YP_003197257.1 258404515 8418183 464315..465361 1 NC_013223.1 KEGG: gbm:Gbem_1617 hypothetical protein; hypothetical protein 465361 8418183 Dret_0378 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197257.1 464315 D 485915 CDS YP_003197258.1 258404516 8418184 465367..466428 1 NC_013223.1 KEGG: sse:Ssed_1264 SecC motif-containing protein; hypothetical protein 466428 8418184 Dret_0379 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197258.1 465367 D 485915 CDS YP_003197259.1 258404517 8418185 466478..467653 1 NC_013223.1 PFAM: glycosyl transferase group 1; KEGG: pub:SAR11_0550 glycosyl transferase family protein; group 1 glycosyl transferase 467653 8418185 Dret_0380 Desulfohalobium retbaense DSM 5692 group 1 glycosyl transferase YP_003197259.1 466478 D 485915 CDS YP_003197260.1 258404518 8418186 467616..468533 1 NC_013223.1 KEGG: sme:SM_b21237 sulfotransferase domain- containing protein; hypothetical protein 468533 8418186 Dret_0381 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197260.1 467616 D 485915 CDS YP_003197261.1 258404519 8418187 468530..469933 1 NC_013223.1 PFAM: polysaccharide biosynthesis protein; KEGG: sme:SM_b20950 putative transport protein, Wzx; polysaccharide biosynthesis protein 469933 8418187 Dret_0382 Desulfohalobium retbaense DSM 5692 polysaccharide biosynthesis protein YP_003197261.1 468530 D 485915 CDS YP_003197262.1 258404520 8418188 470086..471318 1 NC_013223.1 KEGG: abu:Abu_0686 hypothetical protein; hypothetical protein 471318 8418188 Dret_0383 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197262.1 470086 D 485915 CDS YP_003197263.1 258404521 8418189 471336..472514 1 NC_013223.1 PFAM: glycosyl transferase group 1; KEGG: geo:Geob_2133 glycosyl transferase group 1; group 1 glycosyl transferase 472514 8418189 Dret_0384 Desulfohalobium retbaense DSM 5692 group 1 glycosyl transferase YP_003197263.1 471336 D 485915 CDS YP_003197264.1 258404522 8418191 473305..474609 1 NC_013223.1 KEGG: scl:sce7845 hypothetical protein; hypothetical protein 474609 8418191 Dret_0386 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197264.1 473305 D 485915 CDS YP_003197265.1 258404523 8418192 474599..475999 1 NC_013223.1 KEGG: vha:VIBHAR_00696 hypothetical protein; Coenzyme F390 synthetase-like protein 475999 8418192 Dret_0387 Desulfohalobium retbaense DSM 5692 Coenzyme F390 synthetase-like protein YP_003197265.1 474599 D 485915 CDS YP_003197266.1 258404524 8418193 475996..478161 1 NC_013223.1 PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Alcohol dehydrogenase zinc- binding domain protein; KEGG: vvy:VV0357 putatve zinc-binding dehydrogenase; oxidoreductase domain-containing protein 478161 8418193 Dret_0388 Desulfohalobium retbaense DSM 5692 oxidoreductase domain-containing protein YP_003197266.1 475996 D 485915 CDS YP_003197267.1 258404525 8418194 478219..478605 1 NC_013223.1 hypothetical protein 478605 8418194 Dret_0389 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197267.1 478219 D 485915 CDS YP_003197268.1 258404526 8418195 478589..478996 1 NC_013223.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: tau:Tola_2854 transcriptional regulator, XRE family; XRE family transcriptional regulator 478996 8418195 Dret_0390 Desulfohalobium retbaense DSM 5692 XRE family transcriptional regulator YP_003197268.1 478589 D 485915 CDS YP_003197269.1 258404527 8418196 478968..479405 1 NC_013223.1 KEGG: aeh:Mlg_2308 hypothetical protein; hypothetical protein 479405 8418196 Dret_0391 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197269.1 478968 D 485915 CDS YP_003197270.1 258404528 8418197 479407..481080 1 NC_013223.1 PFAM: Heparinase II/III family protein; KEGG: dal:Dalk_1335 heparinase II/III family protein; heparinase II/III family protein 481080 8418197 Dret_0392 Desulfohalobium retbaense DSM 5692 heparinase II/III family protein YP_003197270.1 479407 D 485915 CDS YP_003197271.1 258404529 8418198 481077..482288 1 NC_013223.1 PFAM: glycosyl transferase group 1; KEGG: dal:Dalk_1334 glycosyl transferase group 1; group 1 glycosyl transferase 482288 8418198 Dret_0393 Desulfohalobium retbaense DSM 5692 group 1 glycosyl transferase YP_003197271.1 481077 D 485915 CDS YP_003197272.1 258404530 8418200 482863..484083 1 NC_013223.1 KEGG: dal:Dalk_1333 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 484083 8418200 Dret_0395 Desulfohalobium retbaense DSM 5692 UDP-N-acetylglucosamine 2-epimerase YP_003197272.1 482863 D 485915 CDS YP_003197273.1 258404531 8418202 484885..485799 1 NC_013223.1 PFAM: protein of unknown function DUF1568; KEGG: vei:Veis_2394 hypothetical protein; hypothetical protein 485799 8418202 Dret_0397 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197273.1 484885 D 485915 CDS YP_003197274.1 258404532 8418203 complement(486104..487504) 1 NC_013223.1 KEGG: dat:HRM2_19930 hypothetical protein; hypothetical protein 487504 8418203 Dret_0398 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197274.1 486104 R 485915 CDS YP_003197275.1 258404533 8418204 complement(487489..488136) 1 NC_013223.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tgr:Tgr7_2078 GCN5-related N- acetyltransferase; N-acetyltransferase GCN5 488136 8418204 Dret_0399 Desulfohalobium retbaense DSM 5692 N-acetyltransferase GCN5 YP_003197275.1 487489 R 485915 CDS YP_003197276.1 258404534 8418205 complement(488133..488429) 1 NC_013223.1 PFAM: Protein of unknown function DUF1778; KEGG: hch:HCH_05628 hypothetical protein; hypothetical protein 488429 8418205 Dret_0400 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197276.1 488133 R 485915 CDS YP_003197277.1 258404535 8418206 complement(489047..490522) 1 NC_013223.1 PFAM: Glycosyl transferase, family 4, conserved region; KEGG: dma:DMR_04940 putative glycosyltransferase; glycosyl transferase family protein 490522 8418206 Dret_0401 Desulfohalobium retbaense DSM 5692 glycosyl transferase family protein YP_003197277.1 489047 R 485915 CDS YP_003197278.1 258404536 8418207 491026..492666 1 NC_013223.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: sat:SYN_02385 glutamate synthase [NADPH] small chain; ferredoxin-dependent glutamate synthase 492666 8418207 Dret_0402 Desulfohalobium retbaense DSM 5692 ferredoxin-dependent glutamate synthase YP_003197278.1 491026 D 485915 CDS YP_003197279.1 258404537 8418208 complement(493422..493877) 1 NC_013223.1 PFAM: nuclease (SNase domain protein); KEGG: dma:DMR_41750 putative nuclease; nuclease (SNase domain-containing protein) 493877 8418208 Dret_0403 Desulfohalobium retbaense DSM 5692 nuclease (SNase domain-containing protein) YP_003197279.1 493422 R 485915 CDS YP_003197280.1 258404538 8418209 complement(493864..495237) 1 NC_013223.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: gbm:Gbem_3948 MATE efflux family protein; MATE efflux family protein 495237 8418209 Dret_0404 Desulfohalobium retbaense DSM 5692 MATE efflux family protein YP_003197280.1 493864 R 485915 CDS YP_003197281.1 258404539 8418210 496274..496783 1 NC_013223.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: HNH endonuclease domain-containing protein; HNH endonuclease 496783 8418210 Dret_0405 Desulfohalobium retbaense DSM 5692 HNH endonuclease YP_003197281.1 496274 D 485915 CDS YP_003197282.1 258404540 8418211 complement(497014..497163) 1 NC_013223.1 hypothetical protein 497163 8418211 Dret_0406 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197282.1 497014 R 485915 CDS YP_003197283.1 258404541 8418212 complement(497415..498266) 1 NC_013223.1 KEGG: dvm:DvMF_1219 transposase, putative; transposase 498266 8418212 Dret_0407 Desulfohalobium retbaense DSM 5692 transposase YP_003197283.1 497415 R 485915 CDS YP_003197284.1 258404542 8418214 499819..501834 1 NC_013223.1 KEGG: dvl:Dvul_2370 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; MEKHLA domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein; PAS/PAC sensor signal transduction histidine kinase 501834 8418214 Dret_0409 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor signal transduction histidine kinase YP_003197284.1 499819 D 485915 CDS YP_003197285.1 258404543 8418215 501831..502547 1 NC_013223.1 PFAM: response regulator receiver; Sulfate transporter/antisigma-factor antagonist STAS; SMART: response regulator receiver; KEGG: dde:Dde_0710 response regulator receiver domain-containing protein; anti-sigma-factor antagonist 502547 8418215 Dret_0410 Desulfohalobium retbaense DSM 5692 anti-sigma-factor antagonist YP_003197285.1 501831 D 485915 CDS YP_003197286.1 258404544 8418216 502890..504239 1 NC_013223.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 504239 8418216 Dret_0411 Desulfohalobium retbaense DSM 5692 tRNA (uracil-5-)-methyltransferase Gid YP_003197286.1 502890 D 485915 CDS YP_003197287.1 258404545 8418217 504236..505015 1 NC_013223.1 PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_2110 glycosyl transferase family protein; family 2 glycosyl transferase 505015 8418217 Dret_0412 Desulfohalobium retbaense DSM 5692 family 2 glycosyl transferase YP_003197287.1 504236 D 485915 CDS YP_003197288.1 258404546 8418218 complement(505277..505678) 1 NC_013223.1 PFAM: cytochrome c class III; KEGG: dma:DMR_02560 cytochrome c3; cytochrome c class III 505678 8418218 Dret_0413 Desulfohalobium retbaense DSM 5692 cytochrome c class III YP_003197288.1 505277 R 485915 CDS YP_003197289.1 258404547 8418219 complement(505923..507278) 1 NC_013223.1 Contains selenocysteine; PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dvl:Dvul_0771 oxidoreductase, selenocysteine- containing; hypothetical protein 507278 8418219 Dret_0414 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197289.1 505923 R 485915 CDS YP_003197290.1 258404548 8418220 complement(507481..508371) 1 NC_013223.1 PFAM: UspA domain protein; KEGG: dol:Dole_2256 UspA domain-containing protein; UspA domain-containing protein 508371 8418220 Dret_0415 Desulfohalobium retbaense DSM 5692 UspA domain-containing protein YP_003197290.1 507481 R 485915 CDS YP_003197291.1 258404549 8418221 complement(508826..509734) 1 NC_013223.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dat:HRM2_22770 HdrD2'; hypothetical protein 509734 8418221 Dret_0416 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197291.1 508826 R 485915 CDS YP_003197292.1 258404550 8418222 complement(509701..510285) 1 NC_013223.1 KEGG: sfu:Sfum_0820 putative heterodisulfide reductase, C subunit; putative heterodisulfide reductase, C subunit 510285 8418222 Dret_0417 Desulfohalobium retbaense DSM 5692 putative heterodisulfide reductase, C subunit YP_003197292.1 509701 R 485915 CDS YP_003197293.1 258404551 8418223 complement(510374..513802) 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; response regulator receiver; KEGG: sfu:Sfum_0821 response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase; response regulator receiver protein 513802 8418223 Dret_0418 Desulfohalobium retbaense DSM 5692 response regulator receiver protein YP_003197293.1 510374 R 485915 CDS YP_003197294.1 258404552 8418224 complement(513846..514994) 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_0822 formate dehydrogenase; Formate dehydrogenase 514994 8418224 Dret_0419 Desulfohalobium retbaense DSM 5692 Formate dehydrogenase YP_003197294.1 513846 R 485915 CDS YP_003197295.1 258404553 8418225 complement(515057..515476) 1 NC_013223.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: sfu:Sfum_0823 methyl-viologen-reducing hydrogenase, delta subunit; methyl-viologen-reducing hydrogenase delta subunit 515476 8418225 Dret_0420 Desulfohalobium retbaense DSM 5692 methyl-viologen-reducing hydrogenase delta subunit YP_003197295.1 515057 R 485915 CDS YP_003197296.1 258404554 8418226 complement(515501..517525) 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; KEGG: dde:Dde_1209 heterodisulfide reductase, A subunit; 4Fe-4S ferredoxin 517525 8418226 Dret_0421 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003197296.1 515501 R 485915 CDS YP_003197297.1 258404555 8418227 complement(517549..518616) 1 NC_013223.1 PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: dol:Dole_1150 coenzyme F420 hydrogenase/dehydrogenase beta subunit; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain-containing protein 518616 8418227 Dret_0422 Desulfohalobium retbaense DSM 5692 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain-containing protein YP_003197297.1 517549 R 485915 CDS YP_003197298.1 258404556 8418228 519291..520787 1 NC_013223.1 KEGG: sfu:Sfum_2401 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 520787 8418228 Dret_0423 Desulfohalobium retbaense DSM 5692 signal transduction histidine kinase, nitrogen specific, NtrB YP_003197298.1 519291 D 485915 CDS YP_003197299.1 258404557 8418229 520956..522377 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dal:Dalk_0736 putative two component, sigma54 specific, transcriptional regulator, Fis family; putative two component, sigma54 specific, transcriptional regulator, Fis family 522377 8418229 Dret_0424 Desulfohalobium retbaense DSM 5692 putative two component, sigma54 specific, transcriptional regulator, Fis family YP_003197299.1 520956 D 485915 CDS YP_003197300.1 258404558 8418230 complement(522702..523301) 1 NC_013223.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_2002 TetR family transcriptional regulator; TetR family transcriptional regulator 523301 8418230 Dret_0425 Desulfohalobium retbaense DSM 5692 TetR family transcriptional regulator YP_003197300.1 522702 R 485915 CDS YP_003197301.1 258404559 8418231 523786..525432 1 NC_013223.1 KEGG: dde:Dde_2091 NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthetase 525432 8418231 Dret_0426 Desulfohalobium retbaense DSM 5692 NAD+ synthetase YP_003197301.1 523786 D 485915 CDS YP_003197302.1 258404560 8418232 complement(525856..527238) 1 NC_013223.1 PFAM: glycosyl transferase group 1; KEGG: pca:Pcar_3111 trehalose phosphorylase/synthase; group 1 glycosyl transferase 527238 8418232 Dret_0427 Desulfohalobium retbaense DSM 5692 group 1 glycosyl transferase YP_003197302.1 525856 R 485915 CDS YP_003197303.1 258404561 8418233 528086..528316 1 NC_013223.1 hypothetical protein 528316 8418233 Dret_0428 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197303.1 528086 D 485915 CDS YP_003197304.1 258404562 8418234 528460..528759 1 NC_013223.1 PFAM: protein of unknown function DUF77; KEGG: dvl:Dvul_1840 hypothetical protein; hypothetical protein 528759 8418234 Dret_0429 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197304.1 528460 D 485915 CDS YP_003197305.1 258404563 8418235 complement(528748..529905) 1 NC_013223.1 PFAM: major facilitator superfamily MFS_1; KEGG: dat:HRM2_32890 putative permease of the major facilitator superfamily; major facilitator superfamily protein 529905 8418235 Dret_0430 Desulfohalobium retbaense DSM 5692 major facilitator superfamily protein YP_003197305.1 528748 R 485915 CDS YP_003197306.1 258404564 8418236 530205..530759 1 NC_013223.1 KEGG: dvl:Dvul_0805 hypothetical protein; hypothetical protein 530759 8418236 Dret_0431 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197306.1 530205 D 485915 CDS YP_003197307.1 258404565 8418237 complement(530903..535249) 1 NC_013223.1 PFAM: protein of unknown function DUF490; KEGG: dma:DMR_35520 hypothetical protein; hypothetical protein 535249 8418237 Dret_0432 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197307.1 530903 R 485915 CDS YP_003197308.1 258404566 8418238 complement(535472..537259) 1 NC_013223.1 PFAM: surface antigen (D15); KEGG: dma:DMR_35510 hypothetical protein; surface antigen (D15) 537259 8418238 Dret_0433 Desulfohalobium retbaense DSM 5692 surface antigen (D15) YP_003197308.1 535472 R 485915 CDS YP_003197309.1 258404567 8418239 537388..537819 1 NC_013223.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dvm:DvMF_1013 peptidylprolyl isomerase FKBP- type; FKBP-type peptidylprolyl isomerase 537819 8418239 Dret_0434 Desulfohalobium retbaense DSM 5692 FKBP-type peptidylprolyl isomerase YP_003197309.1 537388 D 485915 CDS YP_003197310.1 258404568 8418240 537831..538490 1 NC_013223.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dma:DMR_43230 haloacid dehalogenase-like hydrolase family protein; haloacid dehalogenase domain-containing protein hydrolase 538490 8418240 Dret_0435 Desulfohalobium retbaense DSM 5692 haloacid dehalogenase domain-containing protein hydrolase YP_003197310.1 537831 D 485915 CDS YP_003197311.1 258404569 8418241 complement(538548..538913) 1 NC_013223.1 KEGG: dvm:DvMF_3059 hypothetical protein; hypothetical protein 538913 8418241 Dret_0436 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197311.1 538548 R 485915 CDS YP_003197312.1 258404570 8418242 complement(538916..540895) 1 NC_013223.1 KEGG: ppd:Ppro_2997 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; CHASE4 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 540895 8418242 Dret_0437 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor-containing diguanylate cyclase YP_003197312.1 538916 R 485915 CDS YP_003197313.1 258404571 8418243 541070..541603 1 NC_013223.1 PFAM: Asparaginase/glutaminase; KEGG: ank:AnaeK_1739 asparaginase; asparaginase/glutaminase 541603 8418243 Dret_0438 Desulfohalobium retbaense DSM 5692 asparaginase/glutaminase YP_003197313.1 541070 D 485915 CDS YP_003197314.1 258404572 8418244 541603..542763 1 NC_013223.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: dvu:DVU0477 isocitrate dehydrogenase, NADP- dependent; Isocitrate dehydrogenase (NADP(+)) 542763 8418244 Dret_0439 Desulfohalobium retbaense DSM 5692 Isocitrate dehydrogenase (NADP(+)) YP_003197314.1 541603 D 485915 CDS YP_003197315.1 258404573 8418245 complement(542933..544183) 1 NC_013223.1 PFAM: ATPase-like, ParA/MinD; Dinitrogenase iron- molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_3202 hypothetical protein; ParA/MinD-like ATPase 544183 8418245 Dret_0440 Desulfohalobium retbaense DSM 5692 ParA/MinD-like ATPase YP_003197315.1 542933 R 485915 CDS YP_003197316.1 258404574 8418246 complement(544199..545056) 1 NC_013223.1 PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3201 iron-sulfur cluster- binding/ATPase domain-containing protein; Cobyrinic acid ac-diamide synthase 545056 8418246 Dret_0441 Desulfohalobium retbaense DSM 5692 Cobyrinic acid ac-diamide synthase YP_003197316.1 544199 R 485915 CDS YP_003197317.1 258404575 8418247 complement(545053..545925) 1 NC_013223.1 PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_1127 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 545925 8418247 Dret_0442 Desulfohalobium retbaense DSM 5692 Cobyrinic acid ac-diamide synthase YP_003197317.1 545053 R 485915 CDS YP_003197318.1 258404576 8418248 546109..546612 1 NC_013223.1 hypothetical protein 546612 8418248 Dret_0443 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197318.1 546109 D 485915 CDS YP_003197319.1 258404577 8418249 complement(546573..546890) 1 NC_013223.1 KEGG: dal:Dalk_2261 putative cytoplasmic protein; putative cytoplasmic protein 546890 8418249 Dret_0444 Desulfohalobium retbaense DSM 5692 putative cytoplasmic protein YP_003197319.1 546573 R 485915 CDS YP_003197320.1 258404578 8418250 complement(546994..547353) 1 NC_013223.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_3198 hypothetical protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein 547353 8418250 Dret_0445 Desulfohalobium retbaense DSM 5692 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_003197320.1 546994 R 485915 CDS YP_003197321.1 258404579 8418251 complement(547374..547751) 1 NC_013223.1 KEGG: dde:Dde_3197 hypothetical protein; hypothetical protein 547751 8418251 Dret_0446 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197321.1 547374 R 485915 CDS YP_003197322.1 258404580 8418252 complement(547927..549243) 1 NC_013223.1 KEGG: dde:Dde_3196 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; PAS fold-4 domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; PAS domain containing protein; putative sigma-54 specific transcriptional regulator 549243 8418252 Dret_0447 Desulfohalobium retbaense DSM 5692 putative sigma-54 specific transcriptional regulator YP_003197322.1 547927 R 485915 CDS YP_003197323.1 258404581 8418253 complement(549478..550140) 1 NC_013223.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: dvm:DvMF_3165 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 550140 8418253 Dret_0448 Desulfohalobium retbaense DSM 5692 hydrogenase nickel incorporation protein HypB YP_003197323.1 549478 R 485915 CDS YP_003197324.1 258404582 8418254 complement(550141..550494) 1 NC_013223.1 PFAM: hydrogenase expression/synthesis HypA; KEGG: dde:Dde_1308 hydrogenase nickel insertion protein HypA, putative; hydrogenase nickel incorporation protein HypA 550494 8418254 Dret_0449 Desulfohalobium retbaense DSM 5692 hydrogenase nickel incorporation protein HypA YP_003197324.1 550141 R 485915 CDS YP_003197325.1 258404583 8418256 551048..551506 1 NC_013223.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dvm:DvMF_0834 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 551506 8418256 Dret_0450 Desulfohalobium retbaense DSM 5692 tRNA/rRNA methyltransferase SpoU YP_003197325.1 551048 D 485915 CDS YP_003197326.1 258404584 8418257 complement(551605..552903) 1 NC_013223.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 552903 eno 8418257 eno Desulfohalobium retbaense DSM 5692 phosphopyruvate hydratase YP_003197326.1 551605 R 485915 CDS YP_003197327.1 258404585 8418258 complement(553040..553867) 1 NC_013223.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 553867 8418258 Dret_0452 Desulfohalobium retbaense DSM 5692 pantothenate kinase YP_003197327.1 553040 R 485915 CDS YP_003197328.1 258404586 8418259 554263..555336 1 NC_013223.1 KEGG: glo:Glov_1763 hypothetical protein; hypothetical protein 555336 8418259 Dret_0453 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197328.1 554263 D 485915 CDS YP_003197329.1 258404587 8418260 555340..558033 1 NC_013223.1 KEGG: dma:DMR_35740 cytochrome c family protein; cytochrome c family protein 558033 8418260 Dret_0454 Desulfohalobium retbaense DSM 5692 cytochrome c family protein YP_003197329.1 555340 D 485915 CDS YP_003197330.1 258404588 8418261 complement(558216..559391) 1 NC_013223.1 KEGG: dma:DMR_18120 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 559391 8418261 Dret_0455 Desulfohalobium retbaense DSM 5692 oxygen-independent coproporphyrinogen III oxidase YP_003197330.1 558216 R 485915 CDS YP_003197331.1 258404589 8418262 complement(559401..559958) 1 NC_013223.1 PFAM: protein of unknown function DUF208; KEGG: dvm:DvMF_2375 protein of unknown function DUF208; hypothetical protein 559958 8418262 Dret_0456 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197331.1 559401 R 485915 CDS YP_003197332.1 258404590 8418263 complement(559945..561414) 1 NC_013223.1 KEGG: dma:DMR_17030 ribonuclease E and G family protein; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; ribonuclease, Rne/Rng family 561414 8418263 Dret_0457 Desulfohalobium retbaense DSM 5692 ribonuclease, Rne/Rng family YP_003197332.1 559945 R 485915 CDS YP_003197333.1 258404591 8418264 complement(561429..562427) 1 NC_013223.1 PFAM: Radical SAM domain protein; KEGG: dde:Dde_0538 radical SAM domain-containing protein; radical SAM protein 562427 8418264 Dret_0458 Desulfohalobium retbaense DSM 5692 radical SAM protein YP_003197333.1 561429 R 485915 CDS YP_003197334.1 258404592 8418265 562457..563290 1 NC_013223.1 PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: dma:DMR_17010 putative methyltransferase; tRNA (adenine-N(1)-)-methyltransferase 563290 8418265 Dret_0459 Desulfohalobium retbaense DSM 5692 tRNA (adenine-N(1)-)-methyltransferase YP_003197334.1 562457 D 485915 CDS YP_003197335.1 258404593 8418266 564090..565355 1 NC_013223.1 KEGG: dde:Dde_0540 phenylacetate-coenzyme A ligase, putative; phenylacetate-coenzyme A ligase 565355 8418266 Dret_0460 Desulfohalobium retbaense DSM 5692 phenylacetate-coenzyme A ligase YP_003197335.1 564090 D 485915 CDS YP_003197336.1 258404594 8418267 565346..566524 1 NC_013223.1 PFAM: protein of unknown function DUF399; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: dde:Dde_0541 PDZ/DHR/GLGF; hypothetical protein 566524 8418267 Dret_0461 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197336.1 565346 D 485915 CDS YP_003197337.1 258404595 8418268 566840..567379 1 NC_013223.1 PFAM: AMMECR1 domain protein; KEGG: dma:DMR_28890 hypothetical protein; AMMECR1 domain-containing protein 567379 8418268 Dret_0462 Desulfohalobium retbaense DSM 5692 AMMECR1 domain-containing protein YP_003197337.1 566840 D 485915 CDS YP_003197338.1 258404596 8418269 complement(567533..568303) 1 NC_013223.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dma:DMR_35690 putative RNA methyltransferase; tRNA/rRNA methyltransferase SpoU 568303 8418269 Dret_0463 Desulfohalobium retbaense DSM 5692 tRNA/rRNA methyltransferase SpoU YP_003197338.1 567533 R 485915 CDS YP_003197339.1 258404597 8418270 568618..569631 1 NC_013223.1 KEGG: csa:Csal_1476 periplasmic phosphate binding protein; phosphate binding protein 569631 8418270 Dret_0464 Desulfohalobium retbaense DSM 5692 phosphate binding protein YP_003197339.1 568618 D 485915 CDS YP_003197340.1 258404598 8418271 569908..571140 1 NC_013223.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_2566 phosphate ABC transporter, inner membrane subunit PstC; phosphate ABC transporter permease 571140 8418271 Dret_0465 Desulfohalobium retbaense DSM 5692 phosphate ABC transporter permease YP_003197340.1 569908 D 485915 CDS YP_003197341.1 258404599 8418272 571165..572337 1 NC_013223.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_1478 phosphate transport system permease protein 2; phosphate ABC transporter permease 572337 8418272 Dret_0466 Desulfohalobium retbaense DSM 5692 phosphate ABC transporter permease YP_003197341.1 571165 D 485915 CDS YP_003197342.1 258404600 8418273 572368..573060 1 NC_013223.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sfu:Sfum_0707 two component transcriptional regulator, winged helix family; two component transcriptional regulator, winged helix family 573060 8418273 Dret_0467 Desulfohalobium retbaense DSM 5692 two component transcriptional regulator, winged helix family YP_003197342.1 572368 D 485915 CDS YP_003197343.1 258404601 8418274 573064..574854 1 NC_013223.1 KEGG: sfu:Sfum_2891 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS/PAC sensor signal transduction histidine kinase 574854 8418274 Dret_0468 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor signal transduction histidine kinase YP_003197343.1 573064 D 485915 CDS YP_003197344.1 258404602 8418275 574984..575748 1 NC_013223.1 KEGG: dvl:Dvul_1910 phosphate ABC transporter, ATPase subunit; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; phosphate ABC transporter ATPase 575748 8418275 Dret_0469 Desulfohalobium retbaense DSM 5692 phosphate ABC transporter ATPase YP_003197344.1 574984 D 485915 CDS YP_003197345.1 258404603 8418276 575796..576464 1 NC_013223.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: sfu:Sfum_0700 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU 576464 8418276 Dret_0470 Desulfohalobium retbaense DSM 5692 phosphate uptake regulator PhoU YP_003197345.1 575796 D 485915 CDS YP_003197346.1 258404604 8418277 576721..578169 1 NC_013223.1 KEGG: sat:SYN_01534 Mg/Co/Ni transporter; TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE intracellular region; MgtE integral membrane region; SMART: CBS domain containing protein; magnesium transporter 578169 8418277 Dret_0471 Desulfohalobium retbaense DSM 5692 magnesium transporter YP_003197346.1 576721 D 485915 CDS YP_003197347.1 258404605 8418278 578307..578408 1 NC_013223.1 hypothetical protein 578408 8418278 Dret_0472 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197347.1 578307 D 485915 CDS YP_003197348.1 258404606 8418279 complement(578608..579138) 1 NC_013223.1 KEGG: dma:DMR_33410 hypothetical protein; hypothetical protein 579138 8418279 Dret_0473 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197348.1 578608 R 485915 CDS YP_003197349.1 258404607 8418280 579280..579939 1 NC_013223.1 KEGG: ppd:Ppro_2838 protein-L-isoaspartate O- methyltransferase; TIGRFAM: protein-L-isoaspartate O- methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase; protein-L-isoaspartate O-methyltransferase 579939 8418280 Dret_0474 Desulfohalobium retbaense DSM 5692 protein-L-isoaspartate O-methyltransferase YP_003197349.1 579280 D 485915 CDS YP_003197350.1 258404608 8418281 580265..581074 1 NC_013223.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3071 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane subunit 581074 8418281 Dret_0475 Desulfohalobium retbaense DSM 5692 polar amino acid ABC transporter inner membrane subunit YP_003197350.1 580265 D 485915 CDS YP_003197351.1 258404609 8418282 581172..581951 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP0989 amino acid permease, ATP-binding protein; ABC transporter 581951 8418282 Dret_0476 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003197351.1 581172 D 485915 CDS YP_003197352.1 258404610 8418283 582092..582928 1 NC_013223.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dde:Dde_3070 extracellular solute-binding protein; family 3 extracellular solute-binding protein 582928 8418283 Dret_0477 Desulfohalobium retbaense DSM 5692 family 3 extracellular solute-binding protein YP_003197352.1 582092 D 485915 CDS YP_003197353.1 258404611 8418284 583182..584063 1 NC_013223.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_2684 binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 584063 8418284 Dret_0478 Desulfohalobium retbaense DSM 5692 polar amino acid ABC transporter inner membrane subunit YP_003197353.1 583182 D 485915 CDS YP_003197354.1 258404612 8418285 584261..584812 1 NC_013223.1 PFAM: amino acid-binding ACT domain protein; KEGG: sfu:Sfum_2949 amino acid-binding ACT domain protein; ACT domain-containing protein 584812 8418285 Dret_0479 Desulfohalobium retbaense DSM 5692 ACT domain-containing protein YP_003197354.1 584261 D 485915 CDS YP_003197355.1 258404613 8418286 584901..586274 1 NC_013223.1 PFAM: protein of unknown function DUF711; KEGG: dde:Dde_3704 hypothetical protein; hypothetical protein 586274 8418286 Dret_0480 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197355.1 584901 D 485915 CDS YP_003197356.1 258404614 8418287 complement(586388..586840) 1 NC_013223.1 PFAM: heat shock protein Hsp20; KEGG: dma:DMR_15920 heat shock protein HSP20 family protein; heat shock protein Hsp20 586840 8418287 Dret_0481 Desulfohalobium retbaense DSM 5692 heat shock protein Hsp20 YP_003197356.1 586388 R 485915 CDS YP_003197357.1 258404615 8418288 complement(586982..588232) 1 NC_013223.1 PFAM: amidohydrolase; KEGG: sfu:Sfum_2961 amidohydrolase; amidohydrolase 588232 8418288 Dret_0482 Desulfohalobium retbaense DSM 5692 amidohydrolase YP_003197357.1 586982 R 485915 CDS YP_003197358.1 258404616 8418289 complement(588318..589343) 1 NC_013223.1 PFAM: dihydrouridine synthase DuS; KEGG: dat:HRM2_10910 dihydrouridine synthase family protein; dihydrouridine synthase DuS 589343 8418289 Dret_0483 Desulfohalobium retbaense DSM 5692 dihydrouridine synthase DuS YP_003197358.1 588318 R 485915 CDS YP_003197359.1 258404617 8418290 complement(589349..589822) 1 NC_013223.1 PFAM: ribonuclease H; KEGG: dvl:Dvul_2274 ribonuclease H; ribonuclease H 589822 8418290 Dret_0484 Desulfohalobium retbaense DSM 5692 ribonuclease H YP_003197359.1 589349 R 485915 CDS YP_003197360.1 258404618 8418291 complement(589822..591222) 1 NC_013223.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: dma:DMR_27100 phosphohexose mutase; phosphomannomutase 591222 8418291 Dret_0485 Desulfohalobium retbaense DSM 5692 phosphomannomutase YP_003197360.1 589822 R 485915 CDS YP_003197361.1 258404619 8418292 591569..592654 1 NC_013223.1 KEGG: dde:Dde_2946 HflK protein; TIGRFAM: HflK protein; PFAM: band 7 protein; SMART: band 7 protein; HflK protein 592654 8418292 Dret_0486 Desulfohalobium retbaense DSM 5692 HflK protein YP_003197361.1 591569 D 485915 CDS YP_003197362.1 258404620 8418293 592657..593508 1 NC_013223.1 KEGG: dde:Dde_2947 HflC protein; TIGRFAM: HflC protein; PFAM: band 7 protein; SMART: band 7 protein; HflC protein 593508 8418293 Dret_0487 Desulfohalobium retbaense DSM 5692 HflC protein YP_003197362.1 592657 D 485915 CDS YP_003197363.1 258404621 8418294 complement(593622..594767) 1 NC_013223.1 KEGG: dvm:DvMF_0138 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase 594767 8418294 Dret_0488 Desulfohalobium retbaense DSM 5692 lipid-A-disaccharide synthase YP_003197363.1 593622 R 485915 CDS YP_003197364.1 258404622 8418295 complement(594863..597091) 1 NC_013223.1 KEGG: dde:Dde_3167 polynucleotide phosphorylase/polyadenylase; TIGRFAM: polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; Polynucleotide phosphorylase, phosphorolytic RNA- binding, bacterial/organelle-type; KH type 2 domain protein; Exoribonuclease, phosphorolytic domain 2; K Homology, type 1, subgroup; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 597091 8418295 Dret_0489 Desulfohalobium retbaense DSM 5692 polynucleotide phosphorylase/polyadenylase YP_003197364.1 594863 R 485915 CDS YP_003197365.1 258404623 8418296 complement(597187..597456) 1 NC_013223.1 TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: dal:Dalk_4742 ribosomal protein S15; 30S ribosomal protein S15 597456 8418296 Dret_0490 Desulfohalobium retbaense DSM 5692 30S ribosomal protein S15 YP_003197365.1 597187 R 485915 CDS YP_003197366.1 258404624 8418297 complement(597468..598439) 1 NC_013223.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: dma:DMR_31630 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B 598439 8418297 Dret_0491 Desulfohalobium retbaense DSM 5692 tRNA pseudouridine synthase B YP_003197366.1 597468 R 485915 CDS YP_003197367.1 258404625 8418298 complement(598432..599424) 1 NC_013223.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_3164 DHH family protein; phosphoesterase RecJ domain-containing protein 599424 8418298 Dret_0492 Desulfohalobium retbaense DSM 5692 phosphoesterase RecJ domain-containing protein YP_003197367.1 598432 R 485915 CDS YP_003197368.1 258404626 8418299 complement(599378..599740) 1 NC_013223.1 TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: tbd:Tbd_0696 ribosome-binding factor A; ribosome-binding factor A 599740 8418299 Dret_0493 Desulfohalobium retbaense DSM 5692 ribosome-binding factor A YP_003197368.1 599378 R 485915 CDS YP_003197369.1 258404627 8418300 complement(599744..600031) 1 NC_013223.1 PFAM: protein of unknown function DUF503; KEGG: dvl:Dvul_2434 hypothetical protein; hypothetical protein 600031 8418300 Dret_0494 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197369.1 599744 R 485915 CDS YP_003197370.1 258404628 8418301 complement(600104..602782) 1 NC_013223.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; Miro domain protein; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; KEGG: dma:DMR_31600 translation initiation factor IF-2; translation initiation factor IF-2 602782 8418301 Dret_0495 Desulfohalobium retbaense DSM 5692 translation initiation factor IF-2 YP_003197370.1 600104 R 485915 CDS YP_003197371.1 258404629 8418302 complement(602772..603032) 1 NC_013223.1 PFAM: protein of unknown function DUF448; KEGG: dvu:DVU0509 hypothetical protein; hypothetical protein 603032 8418302 Dret_0496 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197371.1 602772 R 485915 CDS YP_003197372.1 258404630 8418303 complement(603188..604510) 1 NC_013223.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 604510 nusA 8418303 nusA Desulfohalobium retbaense DSM 5692 transcription elongation factor NusA YP_003197372.1 603188 R 485915 CDS YP_003197373.1 258404631 8418304 complement(604606..605079) 1 NC_013223.1 PFAM: protein of unknown function DUF150; KEGG: dde:Dde_3160 hypothetical protein; hypothetical protein 605079 8418304 Dret_0498 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197373.1 604606 R 485915 CDS YP_003197374.1 258404632 8418306 605491..606330 1 NC_013223.1 PFAM: ATP-NAD/AcoX kinase; KEGG: dvm:DvMF_0581 ATP-NAD/AcoX kinase; NAD(+) kinase 606330 8418306 Dret_0499 Desulfohalobium retbaense DSM 5692 NAD(+) kinase YP_003197374.1 605491 D 485915 CDS YP_003197375.1 258404633 8418307 606447..608207 1 NC_013223.1 KEGG: dde:Dde_2617 hypothetical protein; hypothetical protein 608207 8418307 Dret_0500 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197375.1 606447 D 485915 CDS YP_003197376.1 258404634 8418308 608218..609456 1 NC_013223.1 PFAM: MltA domain protein; 3D domain protein; KEGG: dde:Dde_2733 transglycosylase, putative; MltA domain-containing protein 609456 8418308 Dret_0501 Desulfohalobium retbaense DSM 5692 MltA domain-containing protein YP_003197376.1 608218 D 485915 CDS YP_003197377.1 258404635 8418309 609460..610893 1 NC_013223.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; Asn/Gln amidotransferase; GatB central domain protein; KEGG: dma:DMR_31400 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; glutamyl-tRNA(Gln) amidotransferase subunit B 610893 8418309 Dret_0502 Desulfohalobium retbaense DSM 5692 glutamyl-tRNA(Gln) amidotransferase subunit B YP_003197377.1 609460 D 485915 CDS YP_003197378.1 258404636 8418310 611017..612069 1 NC_013223.1 KEGG: dvl:Dvul_2877 eIF-2B alpha/beta/delta-related uncharacterized proteins; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; translation initiation factor, aIF-2BI family 612069 8418310 Dret_0503 Desulfohalobium retbaense DSM 5692 translation initiation factor, aIF-2BI family YP_003197378.1 611017 D 485915 CDS YP_003197379.1 258404637 8418311 612092..613417 1 NC_013223.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 613417 engA 8418311 engA Desulfohalobium retbaense DSM 5692 GTP-binding protein EngA YP_003197379.1 612092 D 485915 CDS YP_003197380.1 258404638 8418312 613473..614396 1 NC_013223.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 614396 8418312 Dret_0505 Desulfohalobium retbaense DSM 5692 branched-chain amino acid aminotransferase YP_003197380.1 613473 D 485915 CDS YP_003197381.1 258404639 8418313 614415..616031 1 NC_013223.1 KEGG: dde:Dde_0066 DNA polymerase III, tau subunit; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 616031 8418313 Dret_0506 Desulfohalobium retbaense DSM 5692 DNA polymerase III subunits gamma and tau YP_003197381.1 614415 D 485915 CDS YP_003197382.1 258404640 8418314 616113..616415 1 NC_013223.1 PFAM: conserved hypothetical protein; KEGG: dde:Dde_0067 hypothetical protein; hypothetical protein 616415 8418314 Dret_0507 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197382.1 616113 D 485915 CDS YP_003197383.1 258404641 8418315 616417..617028 1 NC_013223.1 TIGRFAM: recombination protein RecR; PFAM: Zinc finger C4-type, RecR; KEGG: dde:Dde_0068 DNA replication and repair protein RecR; recombination protein RecR 617028 8418315 Dret_0508 Desulfohalobium retbaense DSM 5692 recombination protein RecR YP_003197383.1 616417 D 485915 CDS YP_003197384.1 258404642 8418316 617036..619222 1 NC_013223.1 KEGG: dma:DMR_25280 helicase RecD/TraA family protein; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase; Helix-hairpin-helix DNA-binding class 1; helicase, RecD/TraA family 619222 8418316 Dret_0509 Desulfohalobium retbaense DSM 5692 helicase, RecD/TraA family YP_003197384.1 617036 D 485915 CDS YP_003197385.1 258404643 8418318 619487..620833 1 NC_013223.1 TIGRFAM: trigger factor; PFAM: trigger factor domain protein; trigger factor domain; peptidylprolyl isomerase FKBP-type; KEGG: dde:Dde_2222 trigger factor; trigger factor 620833 8418318 Dret_0510 Desulfohalobium retbaense DSM 5692 trigger factor YP_003197385.1 619487 D 485915 CDS YP_003197386.1 258404644 8418319 621055..621648 1 NC_013223.1 KEGG: dvl:Dvul_1734 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP 621648 8418319 Dret_0511 Desulfohalobium retbaense DSM 5692 ATP-dependent Clp protease, proteolytic subunit ClpP YP_003197386.1 621055 D 485915 CDS YP_003197387.1 258404645 8418320 621721..622965 1 NC_013223.1 KEGG: dma:DMR_28160 ATP-dependent Clp protease ATP- binding subunit ClpX; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; AAA ATPase central domain protein; Clp ATPase-like; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit ClpX 622965 8418320 Dret_0512 Desulfohalobium retbaense DSM 5692 ATP-dependent Clp protease ATP-binding subunit ClpX YP_003197387.1 621721 D 485915 CDS YP_003197388.1 258404646 8418321 623103..625550 1 NC_013223.1 KEGG: dvm:DvMF_0112 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; AAA ATPase; ATP-dependent protease La 625550 8418321 Dret_0513 Desulfohalobium retbaense DSM 5692 ATP-dependent protease La YP_003197388.1 623103 D 485915 CDS YP_003197389.1 258404647 8418322 625767..626282 1 NC_013223.1 PFAM: Ferritin Dps family protein; KEGG: sfu:Sfum_1965 ferritin, Dps family protein; ferroxidase 626282 8418322 Dret_0514 Desulfohalobium retbaense DSM 5692 ferroxidase YP_003197389.1 625767 D 485915 CDS YP_003197390.1 258404648 8418323 626390..628111 1 NC_013223.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; KEGG: dvm:DvMF_0184 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 628111 8418323 Dret_0515 Desulfohalobium retbaense DSM 5692 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_003197390.1 626390 D 485915 CDS YP_003197391.1 258404649 8418324 628180..629034 1 NC_013223.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dvm:DvMF_0185 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta 629034 8418324 Dret_0516 Desulfohalobium retbaense DSM 5692 pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta YP_003197391.1 628180 D 485915 CDS YP_003197392.1 258404650 8418325 629063..629623 1 NC_013223.1 PFAM: Redoxin domain protein; KEGG: sat:SYN_00592 hypothetical protein; redoxin domain-containing protein 629623 8418325 Dret_0517 Desulfohalobium retbaense DSM 5692 redoxin domain-containing protein YP_003197392.1 629063 D 485915 CDS YP_003197393.1 258404651 8418326 629707..630300 1 NC_013223.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sfu:Sfum_2548 redoxin domain protein; alkyl hydroperoxide reductase 630300 8418326 Dret_0518 Desulfohalobium retbaense DSM 5692 alkyl hydroperoxide reductase YP_003197393.1 629707 D 485915 CDS YP_003197394.1 258404652 8418327 630297..630644 1 NC_013223.1 KEGG: dde:Dde_1794 hypothetical protein; hypothetical protein 630644 8418327 Dret_0519 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197394.1 630297 D 485915 CDS YP_003197395.1 258404653 8418328 complement(630822..631328) 1 NC_013223.1 KEGG: ppd:Ppro_0185 hypothetical protein; hypothetical protein 631328 8418328 Dret_0520 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197395.1 630822 R 485915 CDS YP_003197396.1 258404654 8418329 complement(631422..632537) 1 NC_013223.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 632537 tgt 8418329 tgt Desulfohalobium retbaense DSM 5692 queuine tRNA-ribosyltransferase YP_003197396.1 631422 R 485915 CDS YP_003197397.1 258404655 8418330 complement(632544..632954) 1 NC_013223.1 KEGG: aeh:Mlg_1165 hypothetical protein; hypothetical protein 632954 8418330 Dret_0522 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197397.1 632544 R 485915 CDS YP_003197398.1 258404656 8418331 complement(632974..633843) 1 NC_013223.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 633843 purU 8418331 purU Desulfohalobium retbaense DSM 5692 formyltetrahydrofolate deformylase YP_003197398.1 632974 R 485915 CDS YP_003197399.1 258404657 8418332 634002..635711 1 NC_013223.1 PFAM: ABC transporter, ATPase, predicted; KEGG: hha:Hhal_1066 hypothetical protein; ABC transporter ATPase 635711 8418332 Dret_0524 Desulfohalobium retbaense DSM 5692 ABC transporter ATPase YP_003197399.1 634002 D 485915 CDS YP_003197400.1 258404658 8418333 635840..636820 1 NC_013223.1 PFAM: extracellular solute-binding protein family 1; KEGG: dat:HRM2_32560 putative sulfate transport system, substrate-binding protein; molybdate ABC transporter substrate-binding protein 636820 8418333 Dret_0525 Desulfohalobium retbaense DSM 5692 molybdate ABC transporter substrate-binding protein YP_003197400.1 635840 D 485915 CDS YP_003197401.1 258404659 8418334 636877..637695 1 NC_013223.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_4086 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 637695 8418334 Dret_0526 Desulfohalobium retbaense DSM 5692 binding-protein-dependent transport system inner membrane protein YP_003197401.1 636877 D 485915 CDS YP_003197402.1 258404660 8418335 637692..638738 1 NC_013223.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: dat:HRM2_32540 CysA; ABC transporter 638738 8418335 Dret_0527 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003197402.1 637692 D 485915 CDS YP_003197403.1 258404661 8418336 638939..640222 1 NC_013223.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; KEGG: dol:Dole_0306 electron transport complex, RnfABCDGE type, C subunit; RnfABCDGE type electron transport complex subunit C 640222 8418336 Dret_0528 Desulfohalobium retbaense DSM 5692 RnfABCDGE type electron transport complex subunit C YP_003197403.1 638939 D 485915 CDS YP_003197404.1 258404662 8418337 640219..641166 1 NC_013223.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: pca:Pcar_0262 NADH:ubiquinone oxidoreductase, RnfD subunit-like; RnfABCDGE type electron transport complex subunit D 641166 8418337 Dret_0529 Desulfohalobium retbaense DSM 5692 RnfABCDGE type electron transport complex subunit D YP_003197404.1 640219 D 485915 CDS YP_003197405.1 258404663 8418338 641171..641761 1 NC_013223.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: dde:Dde_0583 electron transport complex, RnfABCDGE type, G subunit; RnfABCDGE type electron transport complex subunit G 641761 8418338 Dret_0530 Desulfohalobium retbaense DSM 5692 RnfABCDGE type electron transport complex subunit G YP_003197405.1 641171 D 485915 CDS YP_003197406.1 258404664 8418339 641781..642392 1 NC_013223.1 PFAM: RnfA-Nqr electron transport subunit; KEGG: dde:Dde_0584 electron transport complex RsxE subunit; RnfA-Nqr electron transport subunit 642392 8418339 Dret_0531 Desulfohalobium retbaense DSM 5692 RnfA-Nqr electron transport subunit YP_003197406.1 641781 D 485915 CDS YP_003197407.1 258404665 8418340 642419..642994 1 NC_013223.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: pha:PSHAa1105 electron transport complex protein RnfA, inner membrane protein; RnfABCDGE type electron transport complex subunit A 642994 8418340 Dret_0532 Desulfohalobium retbaense DSM 5692 RnfABCDGE type electron transport complex subunit A YP_003197407.1 642419 D 485915 CDS YP_003197408.1 258404666 8418341 643005..643865 1 NC_013223.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0517 ferredoxin; RnfABCDGE type electron transport complex subunit B 643865 8418341 Dret_0533 Desulfohalobium retbaense DSM 5692 RnfABCDGE type electron transport complex subunit B YP_003197408.1 643005 D 485915 CDS YP_003197409.1 258404667 8418342 643862..644317 1 NC_013223.1 PFAM: UspA domain protein; KEGG: dal:Dalk_0122 UspA domain protein; UspA domain-containing protein 644317 8418342 Dret_0534 Desulfohalobium retbaense DSM 5692 UspA domain-containing protein YP_003197409.1 643862 D 485915 CDS YP_003197410.1 258404668 8418343 644412..644789 1 NC_013223.1 KEGG: tgr:Tgr7_1086 positive regulator of sigma E, RseC/MucC; sigma E positive regulator RseC/MucC 644789 8418343 Dret_0535 Desulfohalobium retbaense DSM 5692 sigma E positive regulator RseC/MucC YP_003197410.1 644412 D 485915 CDS YP_003197411.1 258404669 8418344 complement(644879..645916) 1 NC_013223.1 PFAM: ApbE family lipoprotein; KEGG: dps:DP0776 thiamine biosynthesis lipoprotein (ApbE) [precursor]; ApbE family lipoprotein 645916 8418344 Dret_0536 Desulfohalobium retbaense DSM 5692 ApbE family lipoprotein YP_003197411.1 644879 R 485915 CDS YP_003197412.1 258404670 8418345 complement(646139..647596) 1 NC_013223.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 647596 cysS 8418345 cysS Desulfohalobium retbaense DSM 5692 cysteinyl-tRNA synthetase YP_003197412.1 646139 R 485915 CDS YP_003197413.1 258404671 8418346 complement(647671..648882) 1 NC_013223.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; PFAM: MECDP-synthase; 4-diphosphocytidyl-2C-methyl- D-erythritol synthase; KEGG: dvl:Dvul_1625 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 648882 8418346 Dret_0538 Desulfohalobium retbaense DSM 5692 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_003197413.1 647671 R 485915 CDS YP_003197414.1 258404672 8418348 complement(649371..649508) 1 NC_013223.1 hypothetical protein 649508 8418348 Dret_0539 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197414.1 649371 R 485915 CDS YP_003197415.1 258404673 8418349 complement(649495..650232) 1 NC_013223.1 PFAM: protein of unknown function DUF164; KEGG: dvm:DvMF_0258 protein of unknown function DUF164; hypothetical protein 650232 8418349 Dret_0540 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197415.1 649495 R 485915 CDS YP_003197416.1 258404674 8418350 complement(650400..651374) 1 NC_013223.1 PFAM: protein of unknown function DUF34; KEGG: dma:DMR_17790 hypothetical protein; hypothetical protein 651374 8418350 Dret_0541 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197416.1 650400 R 485915 CDS YP_003197417.1 258404675 8418352 complement(651687..652595) 1 NC_013223.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvm:DvMF_0260 thioredoxin-disulfide reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 652595 8418352 Dret_0542 Desulfohalobium retbaense DSM 5692 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003197417.1 651687 R 485915 CDS YP_003197418.1 258404676 8418353 complement(652592..653299) 1 NC_013223.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: dde:Dde_1833 hypothetical protein; hypothetical protein 653299 8418353 Dret_0543 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197418.1 652592 R 485915 CDS YP_003197419.1 258404677 8418354 complement(653495..653962) 1 NC_013223.1 PFAM: protein of unknown function DUF163; KEGG: lip:LI0891 hypothetical protein; hypothetical protein 653962 8418354 Dret_0544 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197419.1 653495 R 485915 CDS YP_003197420.1 258404678 8418355 complement(653959..656049) 1 NC_013223.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: dde:Dde_2334 succinyl-CoA synthetase (ADP- forming) alpha subunit / succinyl-CoA synthetase (ADP- forming) beta subunit; succinyl-CoA synthetase, alpha subunit 656049 8418355 Dret_0545 Desulfohalobium retbaense DSM 5692 succinyl-CoA synthetase, alpha subunit YP_003197420.1 653959 R 485915 CDS YP_003197421.1 258404679 8418356 656324..656917 1 NC_013223.1 KEGG: dma:DMR_23250 hypothetical protein; hypothetical protein 656917 8418356 Dret_0546 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197421.1 656324 D 485915 CDS YP_003197422.1 258404680 8418357 656921..659116 1 NC_013223.1 KEGG: dde:Dde_3000 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 659116 8418357 Dret_0547 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor signal transduction histidine kinase YP_003197422.1 656921 D 485915 CDS YP_003197423.1 258404681 8418358 659170..660528 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: dde:Dde_3003 two component Fis family transcriptional regulator; two component, sigma54 specific, transcriptional regulator, Fis family 660528 8418358 Dret_0548 Desulfohalobium retbaense DSM 5692 two component, sigma54 specific, transcriptional regulator, Fis family YP_003197423.1 659170 D 485915 CDS YP_003197424.1 258404682 8418360 complement(660842..661429) 1 NC_013223.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dvm:DvMF_3031 intracellular protease, PfpI family; Pfpi family intracellular protease 661429 8418360 Dret_0549 Desulfohalobium retbaense DSM 5692 Pfpi family intracellular protease YP_003197424.1 660842 R 485915 CDS YP_003197425.1 258404683 8418361 complement(661521..662399) 1 NC_013223.1 KEGG: dma:DMR_38390 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; acetylglutamate kinase 662399 8418361 Dret_0550 Desulfohalobium retbaense DSM 5692 acetylglutamate kinase YP_003197425.1 661521 R 485915 CDS YP_003197426.1 258404684 8418362 662559..663785 1 NC_013223.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 663785 8418362 Dret_0551 Desulfohalobium retbaense DSM 5692 transposase IS204/IS1001/IS1096/IS1165 family protein YP_003197426.1 662559 D 485915 CDS YP_003197427.1 258404685 8418363 complement(663823..664239) 1 NC_013223.1 KEGG: dde:Dde_1643 hypothetical protein; hypothetical protein 664239 8418363 Dret_0552 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197427.1 663823 R 485915 CDS YP_003197428.1 258404686 8418364 664521..664910 1 NC_013223.1 PFAM: thioesterase superfamily protein; KEGG: dma:DMR_06370 thioesterase superfamily domain protein; thioesterase superfamily protein 664910 8418364 Dret_0553 Desulfohalobium retbaense DSM 5692 thioesterase superfamily protein YP_003197428.1 664521 D 485915 CDS YP_003197429.1 258404687 8418366 665878..666444 1 NC_013223.1 PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: dvm:DvMF_0484 Appr-1-p processing domain protein; Appr-1-p processing protein 666444 8418366 Dret_0554 Desulfohalobium retbaense DSM 5692 Appr-1-p processing protein YP_003197429.1 665878 D 485915 CDS YP_003197430.1 258404688 8418367 666448..666993 1 NC_013223.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 666993 8418367 Dret_0555 Desulfohalobium retbaense DSM 5692 ATP-dependent protease peptidase subunit YP_003197430.1 666448 D 485915 CDS YP_003197431.1 258404689 8418368 667299..668723 1 NC_013223.1 KEGG: dma:DMR_38380 ATP-dependent hsl protease ATP- binding subunit HslU; TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase; heat shock protein HslVU, ATPase subunit HslU 668723 8418368 Dret_0556 Desulfohalobium retbaense DSM 5692 heat shock protein HslVU, ATPase subunit HslU YP_003197431.1 667299 D 485915 CDS YP_003197432.1 258404690 8418369 669390..670364 1 NC_013223.1 PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dat:HRM2_46640 TRAP-type C4-dicarboxylate transport system periplasmic component; Extracellular solute-binding protein 670364 8418369 Dret_0557 Desulfohalobium retbaense DSM 5692 Extracellular solute-binding protein YP_003197432.1 669390 D 485915 CDS YP_003197433.1 258404691 8418370 670367..670846 1 NC_013223.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dat:HRM2_46650 TRAP-type C4-dicarboxylate transport system, small permease component; tripartite AtP-independent periplasmic transporter subunit DctQ 670846 8418370 Dret_0558 Desulfohalobium retbaense DSM 5692 tripartite AtP-independent periplasmic transporter subunit DctQ YP_003197433.1 670367 D 485915 CDS YP_003197434.1 258404692 8418371 670843..672183 1 NC_013223.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dat:HRM2_46660 putative TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 672183 8418371 Dret_0559 Desulfohalobium retbaense DSM 5692 TRAP dicarboxylate transporter subunit DctM YP_003197434.1 670843 D 485915 CDS YP_003197435.1 258404693 8418372 672265..674238 1 NC_013223.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dma:DMR_28210 hydantoin utilization protein A; 5-oxoprolinase (ATP-hydrolyzing) 674238 8418372 Dret_0560 Desulfohalobium retbaense DSM 5692 5-oxoprolinase (ATP-hydrolyzing) YP_003197435.1 672265 D 485915 CDS YP_003197436.1 258404694 8418373 674405..675979 1 NC_013223.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: dma:DMR_28190 hydantoin utilization protein B; 5-oxoprolinase (ATP-hydrolyzing) 675979 8418373 Dret_0561 Desulfohalobium retbaense DSM 5692 5-oxoprolinase (ATP-hydrolyzing) YP_003197436.1 674405 D 485915 CDS YP_003197437.1 258404695 8418374 complement(676151..677503) 1 NC_013223.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dvl:Dvul_1978 TolC family type I secretion outer membrane protein; TolC family type I secretion outer membrane protein 677503 8418374 Dret_0562 Desulfohalobium retbaense DSM 5692 TolC family type I secretion outer membrane protein YP_003197437.1 676151 R 485915 CDS YP_003197438.1 258404696 8418375 complement(677567..682687) 1 NC_013223.1 TIGRFAM: type 1 secretion C-terminal target domain; outer membrane adhesin like proteiin; KEGG: cja:CJA_1396 putative hemolysin; type 1 secretion C-terminal target domain-containing protein 682687 8418375 Dret_0563 Desulfohalobium retbaense DSM 5692 type 1 secretion C-terminal target domain-containing protein YP_003197438.1 677567 R 485915 CDS YP_003197439.1 258404697 8418376 683255..685486 1 NC_013223.1 KEGG: dde:Dde_1418 ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; type I secretion system ATPase 685486 8418376 Dret_0564 Desulfohalobium retbaense DSM 5692 type I secretion system ATPase YP_003197439.1 683255 D 485915 CDS YP_003197440.1 258404698 8418377 685628..686971 1 NC_013223.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dvl:Dvul_1976 HlyD family type I secretion membrane fusion protein; HlyD family type I secretion membrane fusion protein 686971 8418377 Dret_0565 Desulfohalobium retbaense DSM 5692 HlyD family type I secretion membrane fusion protein YP_003197440.1 685628 D 485915 CDS YP_003197441.1 258404699 8418378 686994..687719 1 NC_013223.1 PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: dde:Dde_1420 hypothetical protein; transglutaminase 687719 8418378 Dret_0566 Desulfohalobium retbaense DSM 5692 transglutaminase YP_003197441.1 686994 D 485915 CDS YP_003197442.1 258404700 8418379 687727..689808 1 NC_013223.1 KEGG: dde:Dde_1421 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; metal-dependent phosphohydrolase HD sub domain; PAS fold domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 689808 8418379 Dret_0567 Desulfohalobium retbaense DSM 5692 putative PAS/PAC sensor protein YP_003197442.1 687727 D 485915 CDS YP_003197443.1 258404701 8418380 complement(689958..691427) 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pca:Pcar_1208 two component signal transduction response regulator; two component, sigma54 specific, transcriptional regulator, Fis family 691427 8418380 Dret_0568 Desulfohalobium retbaense DSM 5692 two component, sigma54 specific, transcriptional regulator, Fis family YP_003197443.1 689958 R 485915 CDS YP_003197444.1 258404702 8418381 692766..694280 1 NC_013223.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: pca:Pcar_1192 flagellar M-ring protein FliF; flagellar M-ring protein FliF 694280 8418381 Dret_0569 Desulfohalobium retbaense DSM 5692 flagellar M-ring protein FliF YP_003197444.1 692766 D 485915 CDS YP_003197445.1 258404703 8418382 694399..695430 1 NC_013223.1 TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: pca:Pcar_1191 flagellar motor switch protein FliG; flagellar motor switch protein FliG 695430 8418382 Dret_0570 Desulfohalobium retbaense DSM 5692 flagellar motor switch protein FliG YP_003197445.1 694399 D 485915 CDS YP_003197446.1 258404704 8418383 695423..696151 1 NC_013223.1 PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: pca:Pcar_1190 flagellar biosynthesis protein; flagellar assembly protein FliH/type III secretion system HrpE 696151 8418383 Dret_0571 Desulfohalobium retbaense DSM 5692 flagellar assembly protein FliH/type III secretion system HrpE YP_003197446.1 695423 D 485915 CDS YP_003197447.1 258404705 8418384 696148..697455 1 NC_013223.1 KEGG: pca:Pcar_1189 flagellum-specific ATP synthase FliI; TIGRFAM: flagellar protein export ATPase FliI; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase; flagellar protein export ATPase FliI 697455 8418384 Dret_0572 Desulfohalobium retbaense DSM 5692 flagellar protein export ATPase FliI YP_003197447.1 696148 D 485915 CDS YP_003197448.1 258404706 8418385 697613..698071 1 NC_013223.1 TIGRFAM: flagellar export protein FliJ; KEGG: gbm:Gbem_3834 flagellar export protein FliJ; flagellar export protein FliJ 698071 8418385 Dret_0573 Desulfohalobium retbaense DSM 5692 flagellar export protein FliJ YP_003197448.1 697613 D 485915 CDS YP_003197449.1 258404707 8418386 698068..698598 1 NC_013223.1 KEGG: pca:Pcar_1187 hypothetical protein; hypothetical protein 698598 8418386 Dret_0574 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197449.1 698068 D 485915 CDS YP_003197450.1 258404708 8418387 698621..700279 1 NC_013223.1 PFAM: flagellar hook-length control protein; KEGG: pca:Pcar_1186 putative flagellar hook-length control protein; flagellar hook-length control protein 700279 8418387 Dret_0575 Desulfohalobium retbaense DSM 5692 flagellar hook-length control protein YP_003197450.1 698621 D 485915 CDS YP_003197451.1 258404709 8418388 700295..700978 1 NC_013223.1 PFAM: flagellar hook capping protein; KEGG: pca:Pcar_1185 flagellar hook initiation protein FlgD; flagellar hook capping protein 700978 8418388 Dret_0576 Desulfohalobium retbaense DSM 5692 flagellar hook capping protein YP_003197451.1 700295 D 485915 CDS YP_003197452.1 258404710 8418389 700991..702292 1 NC_013223.1 TIGRFAM: fagellar hook-basal body protein; PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: pca:Pcar_1183 flagellar biosynthesis, hook protein; fagellar hook-basal body protein 702292 8418389 Dret_0577 Desulfohalobium retbaense DSM 5692 fagellar hook-basal body protein YP_003197452.1 700991 D 485915 CDS YP_003197453.1 258404711 8418390 702670..703455 1 NC_013223.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dps:DP2665 flagellar motor apparatus (MotA); MotA/TolQ/ExbB proton channel 703455 8418390 Dret_0578 Desulfohalobium retbaense DSM 5692 MotA/TolQ/ExbB proton channel YP_003197453.1 702670 D 485915 CDS YP_003197454.1 258404712 8418391 703470..704216 1 NC_013223.1 PFAM: OmpA/MotB domain protein; KEGG: pca:Pcar_1171 MotB-like flagellar protein; OmpA/MotB domain-containing protein 704216 8418391 Dret_0579 Desulfohalobium retbaense DSM 5692 OmpA/MotB domain-containing protein YP_003197454.1 703470 D 485915 CDS YP_003197455.1 258404713 8418392 704316..704825 1 NC_013223.1 PFAM: flagellar basal body-associated protein FliL; KEGG: pca:Pcar_1170 flagellar basal body-associated protein; flagellar basal body-associated protein FliL 704825 8418392 Dret_0580 Desulfohalobium retbaense DSM 5692 flagellar basal body-associated protein FliL YP_003197455.1 704316 D 485915 CDS YP_003197456.1 258404714 8418393 704835..705845 1 NC_013223.1 TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: pca:Pcar_1169 flagellar biosynthesis protein, component of motor switch; flagellar motor switch protein FliM 705845 8418393 Dret_0581 Desulfohalobium retbaense DSM 5692 flagellar motor switch protein FliM YP_003197456.1 704835 D 485915 CDS YP_003197457.1 258404715 8418394 705832..706161 1 NC_013223.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: geo:Geob_0506 flagellar motor switch protein FliN; flagellar motor switch protein FliN 706161 8418394 Dret_0582 Desulfohalobium retbaense DSM 5692 flagellar motor switch protein FliN YP_003197457.1 705832 D 485915 CDS YP_003197458.1 258404716 8418395 706158..706547 1 NC_013223.1 PFAM: flagellar biosynthesis protein FliO; KEGG: pca:Pcar_1167 flagellar biogenesis protein FliO; flagellar biosynthesis protein FliO 706547 8418395 Dret_0583 Desulfohalobium retbaense DSM 5692 flagellar biosynthesis protein FliO YP_003197458.1 706158 D 485915 CDS YP_003197459.1 258404717 8418396 706544..707302 1 NC_013223.1 TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: pca:Pcar_1166 flagellar biosynthesis protein FliP; flagellar biosynthetic protein FliP 707302 8418396 Dret_0584 Desulfohalobium retbaense DSM 5692 flagellar biosynthetic protein FliP YP_003197459.1 706544 D 485915 CDS YP_003197460.1 258404718 8418397 707354..707629 1 NC_013223.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: pca:Pcar_1165 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 707629 8418397 Dret_0585 Desulfohalobium retbaense DSM 5692 flagellar biosynthetic protein FliQ YP_003197460.1 707354 D 485915 CDS YP_003197461.1 258404719 8418398 707734..708516 1 NC_013223.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: pca:Pcar_1164 flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR 708516 8418398 Dret_0586 Desulfohalobium retbaense DSM 5692 flagellar biosynthetic protein FliR YP_003197461.1 707734 D 485915 CDS YP_003197462.1 258404720 8418399 708516..709580 1 NC_013223.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 709580 flhB 8418399 flhB Desulfohalobium retbaense DSM 5692 flagellar biosynthesis protein FlhB YP_003197462.1 708516 D 485915 CDS YP_003197463.1 258404721 8418400 709577..711664 1 NC_013223.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 711664 flhA 8418400 flhA Desulfohalobium retbaense DSM 5692 flagellar biosynthesis protein FlhA YP_003197463.1 709577 D 485915 CDS YP_003197464.1 258404722 8418401 711654..712967 1 NC_013223.1 KEGG: pca:Pcar_1161 flagellar GTP-binding protein; TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; flagellar biosynthetic protein FlhF 712967 8418401 Dret_0589 Desulfohalobium retbaense DSM 5692 flagellar biosynthetic protein FlhF YP_003197464.1 711654 D 485915 CDS YP_003197465.1 258404723 8418402 712957..713862 1 NC_013223.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pca:Pcar_1160 putative flagellar biosynthesis protein FlhG; Cobyrinic acid ac-diamide synthase 713862 8418402 Dret_0590 Desulfohalobium retbaense DSM 5692 Cobyrinic acid ac-diamide synthase YP_003197465.1 712957 D 485915 CDS YP_003197466.1 258404724 8418403 713870..714595 1 NC_013223.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma- 70 region 3 domain protein; KEGG: pca:Pcar_1159 flagellar biosynthesis protein, alternative sigma factor 28; RNA polymerase sigma 28 subunit FliA/WhiG 714595 8418403 Dret_0591 Desulfohalobium retbaense DSM 5692 RNA polymerase sigma 28 subunit FliA/WhiG YP_003197466.1 713870 D 485915 CDS YP_003197467.1 258404725 8418404 714595..715041 1 NC_013223.1 KEGG: rpe:RPE_1804 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 715041 8418404 Dret_0592 Desulfohalobium retbaense DSM 5692 methyl-accepting chemotaxis sensory transducer YP_003197467.1 714595 D 485915 CDS YP_003197468.1 258404726 8418405 715215..715946 1 NC_013223.1 TIGRFAM: fagellar hook-basal body protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dvm:DvMF_2517 protein of unknown function DUF1078 domain protein; fagellar hook-basal body protein 715946 8418405 Dret_0593 Desulfohalobium retbaense DSM 5692 fagellar hook-basal body protein YP_003197468.1 715215 D 485915 CDS YP_003197469.1 258404727 8418406 716001..716789 1 NC_013223.1 TIGRFAM: flagellar basal-body rod protein FlgG; fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: pca:Pcar_1156 flagellar basal body rod protein FlgG; flagellar basal-body rod protein FlgG 716789 8418406 Dret_0594 Desulfohalobium retbaense DSM 5692 flagellar basal-body rod protein FlgG YP_003197469.1 716001 D 485915 CDS YP_003197470.1 258404728 8418407 716794..717774 1 NC_013223.1 TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: dps:DP2682 flagellar protein (FlgA); flagella basal body P-ring formation protein FlgA 717774 8418407 Dret_0595 Desulfohalobium retbaense DSM 5692 flagella basal body P-ring formation protein FlgA YP_003197470.1 716794 D 485915 CDS YP_003197471.1 258404729 8418408 717774..718463 1 NC_013223.1 PFAM: flagellar L-ring protein; KEGG: pca:Pcar_1154 flagellar biosynthesis, basal- body outer-membrane L (lipopolysaccharide layer) ring protein; flagellar L-ring protein 718463 8418408 Dret_0596 Desulfohalobium retbaense DSM 5692 flagellar L-ring protein YP_003197471.1 717774 D 485915 CDS YP_003197472.1 258404730 8418409 718503..719612 1 NC_013223.1 PFAM: flagellar P-ring protein; KEGG: pca:Pcar_1153 flagellar basal body P-ring protein; flagellar P-ring protein 719612 8418409 Dret_0597 Desulfohalobium retbaense DSM 5692 flagellar P-ring protein YP_003197472.1 718503 D 485915 CDS YP_003197473.1 258404731 8418410 719661..719990 1 NC_013223.1 PFAM: Flagellar protein FlgJ-like; KEGG: pca:Pcar_1152 putative FlgJ-like flagellar protein; Flagellar protein FlgJ-like protein 719990 8418410 Dret_0598 Desulfohalobium retbaense DSM 5692 Flagellar protein FlgJ-like protein YP_003197473.1 719661 D 485915 CDS YP_003197474.1 258404732 8418411 complement(720315..721541) 1 NC_013223.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 721541 8418411 Dret_0599 Desulfohalobium retbaense DSM 5692 transposase IS204/IS1001/IS1096/IS1165 family protein YP_003197474.1 720315 R 485915 CDS YP_003197475.1 258404733 8418412 722079..722342 1 NC_013223.1 PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: pca:Pcar_1151 putative anti-sigma-28 factor FlgM; anti-sigma-28 factor FlgM 722342 8418412 Dret_0600 Desulfohalobium retbaense DSM 5692 anti-sigma-28 factor FlgM YP_003197475.1 722079 D 485915 CDS YP_003197476.1 258404734 8418413 722347..722706 1 NC_013223.1 KEGG: dps:DP2688 hypothetical protein; hypothetical protein 722706 8418413 Dret_0601 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197476.1 722347 D 485915 CDS YP_003197477.1 258404735 8418414 722709..724391 1 NC_013223.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellin hook IN repeat protein; KEGG: dps:DP2689 flagellar hook-associated protein 1 (FlgK); flagellar hook-associated protein FlgK 724391 8418414 Dret_0602 Desulfohalobium retbaense DSM 5692 flagellar hook-associated protein FlgK YP_003197477.1 722709 D 485915 CDS YP_003197478.1 258404736 8418415 724394..725272 1 NC_013223.1 TIGRFAM: flagellar hook-associated protein 3; KEGG: pca:Pcar_1148 flagellar hook-filament junction protein; flagellar hook-associated protein 3 725272 8418415 Dret_0603 Desulfohalobium retbaense DSM 5692 flagellar hook-associated protein 3 YP_003197478.1 724394 D 485915 CDS YP_003197479.1 258404737 8418416 725335..725595 1 NC_013223.1 TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator; KEGG: dps:DP2691 carbon storage regulator (CsrA); carbon storage regulator CsrA 725595 8418416 Dret_0604 Desulfohalobium retbaense DSM 5692 carbon storage regulator CsrA YP_003197479.1 725335 D 485915 CDS YP_003197480.1 258404738 8418417 725582..726046 1 NC_013223.1 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 726046 8418417 Dret_0605 Desulfohalobium retbaense DSM 5692 flagellar assembly protein FliW YP_003197480.1 725582 D 485915 CDS YP_003197481.1 258404739 8418418 complement(726308..727522) 1 NC_013223.1 KEGG: dal:Dalk_4137 hypothetical protein; hypothetical protein 727522 8418418 Dret_0606 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197481.1 726308 R 485915 CDS YP_003197482.1 258404740 8418419 727557..728066 1 NC_013223.1 hypothetical protein 728066 8418419 Dret_0607 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197482.1 727557 D 485915 CDS YP_003197483.1 258404741 8418420 complement(728690..729511) 1 NC_013223.1 KEGG: cja:CJA_0432 SrpA-related protein; hypothetical protein 729511 8418420 Dret_0608 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197483.1 728690 R 485915 CDS YP_003197484.1 258404742 8418421 730236..731237 1 NC_013223.1 TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase; PFAM: polysaccharide biosynthesis protein CapD; 3- beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; short- chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: dat:HRM2_36710 putative polysaccharide biosynthesis protein (NAD-dependent epimerase/dehydratase family protein); UDP-N-acetylglucosamine 4,6-dehydratase 731237 8418421 Dret_0609 Desulfohalobium retbaense DSM 5692 UDP-N-acetylglucosamine 4,6-dehydratase YP_003197484.1 730236 D 485915 CDS YP_003197485.1 258404743 8418422 731234..732451 1 NC_013223.1 TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4- aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: aeh:Mlg_2323 DegT/DnrJ/EryC1/StrS aminotransferase; UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase 732451 8418422 Dret_0610 Desulfohalobium retbaense DSM 5692 UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase YP_003197485.1 731234 D 485915 CDS YP_003197486.1 258404744 8418423 732559..734268 1 NC_013223.1 PFAM: LmbE family protein; KEGG: pca:Pcar_1118 hypothetical protein; LmbE family protein 734268 8418423 Dret_0611 Desulfohalobium retbaense DSM 5692 LmbE family protein YP_003197486.1 732559 D 485915 CDS YP_003197487.1 258404745 8418424 734261..735913 1 NC_013223.1 PFAM: peptidase M20; KEGG: bav:BAV0460 amidohydrolase/peptidase/deacetylase; peptidase M20 735913 8418424 Dret_0612 Desulfohalobium retbaense DSM 5692 peptidase M20 YP_003197487.1 734261 D 485915 CDS YP_003197488.1 258404746 8418425 735913..736995 1 NC_013223.1 PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: vei:Veis_1396 oxidoreductase domain- containing protein; oxidoreductase domain-containing protein 736995 8418425 Dret_0613 Desulfohalobium retbaense DSM 5692 oxidoreductase domain-containing protein YP_003197488.1 735913 D 485915 CDS YP_003197489.1 258404747 8418426 736999..737997 1 NC_013223.1 PFAM: N-acetylneuraminic acid synthase domain; KEGG: gme:Gmet_0455 N-acetylneuraminate synthase; N-acetylneuraminic acid synthase domain-containing protein 737997 8418426 Dret_0614 Desulfohalobium retbaense DSM 5692 N-acetylneuraminic acid synthase domain-containing protein YP_003197489.1 736999 D 485915 CDS YP_003197490.1 258404748 8418427 737994..738989 1 NC_013223.1 PFAM: formyl transferase domain protein; KEGG: gur:Gura_0819 methionyl-tRNA formyltransferase; formyl transferase domain-containing protein 738989 8418427 Dret_0615 Desulfohalobium retbaense DSM 5692 formyl transferase domain-containing protein YP_003197490.1 737994 D 485915 CDS YP_003197491.1 258404749 8418428 738994..740829 1 NC_013223.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: dde:Dde_0421 spore coat polysaccharide biosynthesis protein FlmC; acylneuraminate cytidylyltransferase 740829 8418428 Dret_0616 Desulfohalobium retbaense DSM 5692 acylneuraminate cytidylyltransferase YP_003197491.1 738994 D 485915 CDS YP_003197492.1 258404750 8418429 740826..741758 1 NC_013223.1 PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: gme:Gmet_0453 hypothetical protein; type 12 methyltransferase 741758 8418429 Dret_0617 Desulfohalobium retbaense DSM 5692 type 12 methyltransferase YP_003197492.1 740826 D 485915 CDS YP_003197493.1 258404751 8418430 741786..743003 1 NC_013223.1 KEGG: dde:Dde_0419 hypothetical protein; hypothetical protein 743003 8418430 Dret_0618 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197493.1 741786 D 485915 CDS YP_003197494.1 258404752 8418431 743034..744266 1 NC_013223.1 PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; KEGG: dde:Dde_0418 hypothetical protein; phosphoribosylglycinamide synthetase 744266 8418431 Dret_0619 Desulfohalobium retbaense DSM 5692 phosphoribosylglycinamide synthetase YP_003197494.1 743034 D 485915 CDS YP_003197495.1 258404753 8418432 744298..745020 1 NC_013223.1 KEGG: dat:HRM2_36850 NeuA; TIGRFAM: pseudaminic acid CMP-transferase; PFAM: acylneuraminate cytidylyltransferase; pseudaminic acid CMP-transferase 745020 8418432 Dret_0620 Desulfohalobium retbaense DSM 5692 pseudaminic acid CMP-transferase YP_003197495.1 744298 D 485915 CDS YP_003197496.1 258404754 8418433 745346..747073 1 NC_013223.1 PFAM: transposase IS4 family protein; KEGG: dal:Dalk_3879 transposase-like protein; transposase IS4 family protein 747073 8418433 Dret_0621 Desulfohalobium retbaense DSM 5692 transposase IS4 family protein YP_003197496.1 745346 D 485915 CDS YP_003197497.1 258404755 8418434 747084..748895 1 NC_013223.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: avn:Avin_24740 RNA-directed DNA polymerase; RNA-directed DNA polymerase 748895 8418434 Dret_0622 Desulfohalobium retbaense DSM 5692 RNA-directed DNA polymerase YP_003197497.1 747084 D 485915 CDS YP_003197498.1 258404756 8418437 750009..751346 1 NC_013223.1 PFAM: transposase IS4 family protein; KEGG: maq:Maqu_0982 transposase, IS4 family protein; transposase IS4 family protein 751346 8418437 Dret_0625 Desulfohalobium retbaense DSM 5692 transposase IS4 family protein YP_003197498.1 750009 D 485915 CDS YP_003197499.1 258404757 8418438 751886..753211 1 NC_013223.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: ecl:EcolC_2197 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 753211 8418438 Dret_0626 Desulfohalobium retbaense DSM 5692 RNA-directed DNA polymerase YP_003197499.1 751886 D 485915 CDS YP_003197500.1 258404758 8418440 754669..755175 1 NC_013223.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: TPR Domain containing protein; hypothetical protein 755175 8418440 Dret_0628 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197500.1 754669 D 485915 CDS YP_003197501.1 258404759 8418441 755211..757148 1 NC_013223.1 PFAM: protein of unknown function DUF115; KEGG: pat:Patl_3053 hypothetical protein; hypothetical protein 757148 8418441 Dret_0629 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197501.1 755211 D 485915 CDS YP_003197502.1 258404760 8418442 757455..758300 1 NC_013223.1 PFAM: flagellin domain protein; KEGG: pca:Pcar_1114 flagellin/flagellar hook- associated protein; flagellin domain-containing protein 758300 8418442 Dret_0630 Desulfohalobium retbaense DSM 5692 flagellin domain-containing protein YP_003197502.1 757455 D 485915 CDS YP_003197503.1 258404761 8418443 758349..759194 1 NC_013223.1 PFAM: flagellin domain protein; KEGG: pca:Pcar_1114 flagellin/flagellar hook- associated protein; flagellin domain-containing protein 759194 8418443 Dret_0631 Desulfohalobium retbaense DSM 5692 flagellin domain-containing protein YP_003197503.1 758349 D 485915 CDS YP_003197504.1 258404762 8418444 759275..759700 1 NC_013223.1 PFAM: flagellar protein FlaG protein; KEGG: lhk:LHK_02704 FlaG; flagellar protein FlaG protein 759700 8418444 Dret_0632 Desulfohalobium retbaense DSM 5692 flagellar protein FlaG protein YP_003197504.1 759275 D 485915 CDS YP_003197505.1 258404763 8418445 759749..761152 1 NC_013223.1 PFAM: flagellar hook-associated 2 domain protein; flagellar hook-associated protein 2 domain protein; KEGG: spl:Spea_1354 flagellar hook-associated 2 domain-containing protein; flagellar hook-associated 2 domain-containing protein 761152 8418445 Dret_0633 Desulfohalobium retbaense DSM 5692 flagellar hook-associated 2 domain-containing protein YP_003197505.1 759749 D 485915 CDS YP_003197506.1 258404764 8418446 761168..761626 1 NC_013223.1 TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: gur:Gura_4093 flagellar protein FliS; flagellar protein FliS 761626 8418446 Dret_0634 Desulfohalobium retbaense DSM 5692 flagellar protein FliS YP_003197506.1 761168 D 485915 CDS YP_003197507.1 258404765 8418447 761592..761771 1 NC_013223.1 hypothetical protein 761771 8418447 Dret_0635 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197507.1 761592 D 485915 CDS YP_003197508.1 258404766 8418448 761845..762450 1 NC_013223.1 PFAM: type IV pilus assembly PilZ; KEGG: pca:Pcar_1109 hypothetical protein; type IV pilus assembly PilZ 762450 8418448 Dret_0636 Desulfohalobium retbaense DSM 5692 type IV pilus assembly PilZ YP_003197508.1 761845 D 485915 CDS YP_003197509.1 258404767 8418449 complement(762973..763800) 1 NC_013223.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA208 transposition helper protein; IstB domain-containing protein ATP-binding protein 763800 8418449 Dret_0637 Desulfohalobium retbaense DSM 5692 IstB domain-containing protein ATP-binding protein YP_003197509.1 762973 R 485915 CDS YP_003197510.1 258404768 8418450 complement(763879..765393) 1 NC_013223.1 PFAM: Integrase catalytic region; KEGG: dma:DMR_29110 putative transposase orfA for insertion sequence element; integrase catalytic subunit 765393 8418450 Dret_0638 Desulfohalobium retbaense DSM 5692 integrase catalytic subunit YP_003197510.1 763879 R 485915 CDS YP_003197511.1 258404769 8418451 765458..765568 1 NC_013223.1 hypothetical protein 765568 8418451 Dret_0639 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197511.1 765458 D 485915 CDS YP_003197512.1 258404770 8418452 765883..766947 1 NC_013223.1 KEGG: dps:DP2483 hypothetical protein; hypothetical protein 766947 8418452 Dret_0640 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197512.1 765883 D 485915 CDS YP_003197513.1 258404771 8418454 complement(767464..769014) 1 NC_013223.1 PFAM: transposase IS66; KEGG: dma:DMR_41410 putative transposase orf3 for insertion sequence element; transposase IS66 769014 8418454 Dret_0642 Desulfohalobium retbaense DSM 5692 transposase IS66 YP_003197513.1 767464 R 485915 CDS YP_003197514.1 258404772 8418455 complement(769064..769417) 1 NC_013223.1 PFAM: IS66 Orf2 family protein; KEGG: dat:HRM2_43710 transposase; IS66 Orf2 family protein 769417 8418455 Dret_0643 Desulfohalobium retbaense DSM 5692 IS66 Orf2 family protein YP_003197514.1 769064 R 485915 CDS YP_003197515.1 258404773 8418456 complement(769414..769755) 1 NC_013223.1 KEGG: dma:DMR_41530 putative transposase orf1 for insertion sequence element; putative transposase orf1 for insertion sequence element 769755 8418456 Dret_0644 Desulfohalobium retbaense DSM 5692 putative transposase orf1 for insertion sequence element YP_003197515.1 769414 R 485915 CDS YP_003197516.1 258404774 8418458 771449..772675 1 NC_013223.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 772675 8418458 Dret_0646 Desulfohalobium retbaense DSM 5692 transposase IS204/IS1001/IS1096/IS1165 family protein YP_003197516.1 771449 D 485915 CDS YP_003197517.1 258404775 8418459 complement(772961..773482) 1 NC_013223.1 hypothetical protein 773482 8418459 Dret_0647 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197517.1 772961 R 485915 CDS YP_003197518.1 258404776 8418460 complement(773796..774065) 1 NC_013223.1 KEGG: pca:Pcar_1105 hypothetical protein; hypothetical protein 774065 8418460 Dret_0648 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197518.1 773796 R 485915 CDS YP_003197519.1 258404777 8418461 complement(774644..776722) 1 NC_013223.1 KEGG: dps:DP2649 two-component system response regulator; response regulator receiver protein 776722 8418461 Dret_0649 Desulfohalobium retbaense DSM 5692 response regulator receiver protein YP_003197519.1 774644 R 485915 CDS YP_003197520.1 258404778 8418462 complement(776722..777198) 1 NC_013223.1 KEGG: pca:Pcar_1206 inhibitor of MCP methylation, CheC-like; inhibitor of MCP methylation, CheC-like protein 777198 8418462 Dret_0650 Desulfohalobium retbaense DSM 5692 inhibitor of MCP methylation, CheC-like protein YP_003197520.1 776722 R 485915 CDS YP_003197521.1 258404779 8418463 complement(777374..777748) 1 NC_013223.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pca:Pcar_1205 CheY response regulator; response regulator receiver protein 777748 8418463 Dret_0651 Desulfohalobium retbaense DSM 5692 response regulator receiver protein YP_003197521.1 777374 R 485915 CDS YP_003197522.1 258404780 8418464 778212..780713 1 NC_013223.1 KEGG: pca:Pcar_1196 hypothetical protein; hypothetical protein 780713 8418464 Dret_0652 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197522.1 778212 D 485915 CDS YP_003197523.1 258404781 8418465 780941..781351 1 NC_013223.1 TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: geo:Geob_0491 flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB 781351 8418465 Dret_0653 Desulfohalobium retbaense DSM 5692 flagellar basal-body rod protein FlgB YP_003197523.1 780941 D 485915 CDS YP_003197524.1 258404782 8418466 781373..781801 1 NC_013223.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: pca:Pcar_1194 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 781801 8418466 Dret_0654 Desulfohalobium retbaense DSM 5692 flagellar basal-body rod protein FlgC YP_003197524.1 781373 D 485915 CDS YP_003197525.1 258404783 8418467 781806..782117 1 NC_013223.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: pca:Pcar_1193 flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE 782117 8418467 Dret_0655 Desulfohalobium retbaense DSM 5692 flagellar hook-basal body complex subunit FliE YP_003197525.1 781806 D 485915 CDS YP_003197526.1 258404784 8418468 782510..785125 1 NC_013223.1 PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: ank:AnaeK_2487 CheA signal transduction histidine kinase; CheA signal transduction histidine kinase 785125 8418468 Dret_0656 Desulfohalobium retbaense DSM 5692 CheA signal transduction histidine kinase YP_003197526.1 782510 D 485915 CDS YP_003197527.1 258404785 8418469 785269..787122 1 NC_013223.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_1135 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 787122 8418469 Dret_0657 Desulfohalobium retbaense DSM 5692 methyl-accepting chemotaxis sensory transducer YP_003197527.1 785269 D 485915 CDS YP_003197528.1 258404786 8418470 787239..787748 1 NC_013223.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: sat:SYN_00975 chemotaxis protein; CheW protein 787748 8418470 Dret_0658 Desulfohalobium retbaense DSM 5692 CheW protein YP_003197528.1 787239 D 485915 CDS YP_003197529.1 258404787 8418471 788087..790483 1 NC_013223.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_1166 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 790483 8418471 Dret_0659 Desulfohalobium retbaense DSM 5692 methyl-accepting chemotaxis sensory transducer YP_003197529.1 788087 D 485915 CDS YP_003197530.1 258404788 8418472 790562..792589 1 NC_013223.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_1135 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 792589 8418472 Dret_0660 Desulfohalobium retbaense DSM 5692 methyl-accepting chemotaxis sensory transducer YP_003197530.1 790562 D 485915 CDS YP_003197531.1 258404789 8418473 792659..793474 1 NC_013223.1 KEGG: ank:AnaeK_2486 MCP methyltransferase, CheR- type; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type; chemotaxis protein CheR 793474 8418473 Dret_0661 Desulfohalobium retbaense DSM 5692 chemotaxis protein CheR YP_003197531.1 792659 D 485915 CDS YP_003197532.1 258404790 8418474 793654..794145 1 NC_013223.1 PFAM: CheD family protein; KEGG: dal:Dalk_0652 CheD; CheD, stimulates methylation of MCP protein 794145 8418474 Dret_0662 Desulfohalobium retbaense DSM 5692 CheD, stimulates methylation of MCP protein YP_003197532.1 793654 D 485915 CDS YP_003197533.1 258404791 8418475 794245..794634 1 NC_013223.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dat:HRM2_34440 putative chemotaxis response regulator receiver (CheY-like); response regulator receiver protein 794634 8418475 Dret_0663 Desulfohalobium retbaense DSM 5692 response regulator receiver protein YP_003197533.1 794245 D 485915 CDS YP_003197534.1 258404792 8418476 794631..795101 1 NC_013223.1 hypothetical protein 795101 8418476 Dret_0664 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197534.1 794631 D 485915 CDS YP_003197535.1 258404793 8418477 795098..796129 1 NC_013223.1 KEGG: dal:Dalk_0655 response regulator receiver modulated CheB methylesterase; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver; response regulator receiver modulated CheB methylesterase 796129 8418477 Dret_0665 Desulfohalobium retbaense DSM 5692 response regulator receiver modulated CheB methylesterase YP_003197535.1 795098 D 485915 CDS YP_003197536.1 258404794 8418478 796295..796591 1 NC_013223.1 KEGG: dvm:DvMF_0939 hypothetical protein; hypothetical protein 796591 8418478 Dret_0666 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197536.1 796295 D 485915 CDS YP_003197537.1 258404795 8418479 796643..797536 1 NC_013223.1 PFAM: Metal-dependent hydrolase HDOD; metal- dependent phosphohydrolase HD sub domain; KEGG: rfr:Rfer_1986 metal dependent phosphohydrolase; metal dependent phosphohydrolase 797536 8418479 Dret_0667 Desulfohalobium retbaense DSM 5692 metal dependent phosphohydrolase YP_003197537.1 796643 D 485915 CDS YP_003197538.1 258404796 8418480 797560..798102 1 NC_013223.1 hypothetical protein 798102 8418480 Dret_0668 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197538.1 797560 D 485915 CDS YP_003197539.1 258404797 8418481 798191..798682 1 NC_013223.1 KEGG: pca:Pcar_1201 CheD-like chemotaxis protein; CheD, stimulates methylation of MCP protein 798682 8418481 Dret_0669 Desulfohalobium retbaense DSM 5692 CheD, stimulates methylation of MCP protein YP_003197539.1 798191 D 485915 CDS YP_003197540.1 258404798 8418482 798690..799553 1 NC_013223.1 KEGG: pca:Pcar_1202 signal transduction protein; TIGRFAM: metal dependent phophohydrolase; PFAM: Metal-dependent hydrolase HDOD; metal- dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 799553 8418482 Dret_0670 Desulfohalobium retbaense DSM 5692 metal dependent phosphohydrolase YP_003197540.1 798690 D 485915 CDS YP_003197541.1 258404799 8418483 complement(800028..801530) 1 NC_013223.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; KEGG: lpn:lpg1130 adenylate cyclase; adenylate/guanylate cyclase with integral membrane sensor 801530 8418483 Dret_0671 Desulfohalobium retbaense DSM 5692 adenylate/guanylate cyclase with integral membrane sensor YP_003197541.1 800028 R 485915 CDS YP_003197542.1 258404800 8418484 complement(801622..802416) 1 NC_013223.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: dal:Dalk_0314 ADP-ribosylation/crystallin J1; ADP-ribosylation/Crystallin J1 802416 8418484 Dret_0672 Desulfohalobium retbaense DSM 5692 ADP-ribosylation/Crystallin J1 YP_003197542.1 801622 R 485915 CDS YP_003197543.1 258404801 8418485 803158..804207 1 NC_013223.1 PFAM: cobalamin B12-binding domain protein; KEGG: scl:sce4024 putative cobalamin binding protein; cobalamin B12-binding domain-containing protein 804207 8418485 Dret_0673 Desulfohalobium retbaense DSM 5692 cobalamin B12-binding domain-containing protein YP_003197543.1 803158 D 485915 CDS YP_003197544.1 258404802 8418486 804294..805361 1 NC_013223.1 KEGG: dde:Dde_3087 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 805361 8418486 Dret_0674 Desulfohalobium retbaense DSM 5692 diguanylate cyclase YP_003197544.1 804294 D 485915 CDS YP_003197545.1 258404803 8418488 805693..807009 1 NC_013223.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dde:Dde_3572 type I phosphodiesterase/nucleotide pyrophosphatase family protein; type I phosphodiesterase/nucleotide pyrophosphatase 807009 8418488 Dret_0675 Desulfohalobium retbaense DSM 5692 type I phosphodiesterase/nucleotide pyrophosphatase YP_003197545.1 805693 D 485915 CDS YP_003197546.1 258404804 8418489 807217..807987 1 NC_013223.1 PFAM: protein of unknown function DUF140; KEGG: sat:SYN_00411 ABC-type transport system involved in resistance to organic solvents, permease component; hypothetical protein 807987 8418489 Dret_0676 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197546.1 807217 D 485915 CDS YP_003197547.1 258404805 8418490 808013..808780 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00410 ABC-type transport system, ATP- binding component; ABC transporter 808780 8418490 Dret_0677 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003197547.1 808013 D 485915 CDS YP_003197548.1 258404806 8418491 808792..810381 1 NC_013223.1 PFAM: Mammalian cell entry related domain protein; KEGG: sat:SYN_00409 ABC-type transport system involved in resistance to organic solvents, periplasmic component; mammalian cell entry domain-containing protein 810381 8418491 Dret_0678 Desulfohalobium retbaense DSM 5692 mammalian cell entry domain-containing protein YP_003197548.1 808792 D 485915 CDS YP_003197549.1 258404807 8418492 810415..810903 1 NC_013223.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: dma:DMR_39340 putative phosphoesterase; phosphodiesterase 810903 8418492 Dret_0679 Desulfohalobium retbaense DSM 5692 phosphodiesterase YP_003197549.1 810415 D 485915 CDS YP_003197550.1 258404808 8418493 811034..811252 1 NC_013223.1 TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; KEGG: dvm:DvMF_2132 translation initiation factor IF-1; translation initiation factor IF-1 811252 8418493 Dret_0680 Desulfohalobium retbaense DSM 5692 translation initiation factor IF-1 YP_003197550.1 811034 D 485915 CDS YP_003197551.1 258404809 8418494 complement(811436..811975) 1 NC_013223.1 KEGG: dde:Dde_2611 putative lipoprotein; putative lipoprotein 811975 8418494 Dret_0681 Desulfohalobium retbaense DSM 5692 putative lipoprotein YP_003197551.1 811436 R 485915 CDS YP_003197552.1 258404810 8418495 complement(812073..812681) 1 NC_013223.1 KEGG: dde:Dde_2610 hypothetical protein; hypothetical protein 812681 8418495 Dret_0682 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197552.1 812073 R 485915 CDS YP_003197553.1 258404811 8418496 complement(812647..813237) 1 NC_013223.1 PFAM: shikimate kinase; KEGG: dvl:Dvul_0723 shikimate kinase; shikimate kinase 813237 8418496 Dret_0683 Desulfohalobium retbaense DSM 5692 shikimate kinase YP_003197553.1 812647 R 485915 CDS YP_003197554.1 258404812 8418497 complement(813688..814275) 1 NC_013223.1 hypothetical protein 814275 8418497 Dret_0684 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197554.1 813688 R 485915 CDS YP_003197555.1 258404813 8418498 814394..815743 1 NC_013223.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: hha:Hhal_0607 amino acid carrier protein; amino acid carrier protein 815743 8418498 Dret_0685 Desulfohalobium retbaense DSM 5692 amino acid carrier protein YP_003197555.1 814394 D 485915 CDS YP_003197556.1 258404814 8418499 816101..816712 1 NC_013223.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 816712 8418499 Dret_0686 Desulfohalobium retbaense DSM 5692 phosphoheptose isomerase YP_003197556.1 816101 D 485915 CDS YP_003197557.1 258404815 8418500 816934..817176 1 NC_013223.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dde:Dde_2620 hypothetical protein; FmdB family regulatory protein 817176 8418500 Dret_0687 Desulfohalobium retbaense DSM 5692 FmdB family regulatory protein YP_003197557.1 816934 D 485915 CDS YP_003197558.1 258404816 8418501 817321..818256 1 NC_013223.1 KEGG: dvu:DVU1890 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 818256 8418501 Dret_0688 Desulfohalobium retbaense DSM 5692 porphobilinogen deaminase YP_003197558.1 817321 D 485915 CDS YP_003197559.1 258404817 8418502 818574..819494 1 NC_013223.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: dvm:DvMF_0418 biotin/acetyl-CoA-carboxylase ligase; biotin--acetyl-CoA-carboxylase ligase 819494 8418502 Dret_0689 Desulfohalobium retbaense DSM 5692 biotin--acetyl-CoA-carboxylase ligase YP_003197559.1 818574 D 485915 CDS YP_003197560.1 258404818 8418503 819563..823255 1 NC_013223.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 823255 8418503 Dret_0690 Desulfohalobium retbaense DSM 5692 pyruvate carboxylase YP_003197560.1 819563 D 485915 CDS YP_003197561.1 258404819 8418504 823311..826892 1 NC_013223.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; PEP- utilizing protein; KEGG: dde:Dde_2080 phosphoenolpyruvate synthase; pyruvate phosphate dikinase PEP/pyruvate- binding protein 826892 8418504 Dret_0691 Desulfohalobium retbaense DSM 5692 pyruvate phosphate dikinase PEP/pyruvate- binding protein YP_003197561.1 823311 D 485915 CDS YP_003197562.1 258404820 8418505 complement(827020..827253) 1 NC_013223.1 KEGG: dde:Dde_3025 hypothetical protein; hypothetical protein 827253 8418505 Dret_0692 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197562.1 827020 R 485915 CDS YP_003197563.1 258404821 8418506 complement(827262..827570) 1 NC_013223.1 hypothetical protein 827570 8418506 Dret_0693 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197563.1 827262 R 485915 CDS YP_003197564.1 258404822 8418507 complement(827754..828221) 1 NC_013223.1 PFAM: thioesterase superfamily protein; KEGG: dat:HRM2_17880 acyl-CoA thioester hydrolase; thioesterase superfamily protein 828221 8418507 Dret_0694 Desulfohalobium retbaense DSM 5692 thioesterase superfamily protein YP_003197564.1 827754 R 485915 CDS YP_003197565.1 258404823 8418508 complement(828585..829421) 1 NC_013223.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pca:Pcar_1402 GNAT family acetyltransferase; N-acetyltransferase GCN5 829421 8418508 Dret_0695 Desulfohalobium retbaense DSM 5692 N-acetyltransferase GCN5 YP_003197565.1 828585 R 485915 CDS YP_003197566.1 258404824 8418509 complement(829408..830730) 1 NC_013223.1 KEGG: dde:Dde_0189 L-lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; lysine 2,3-aminomutase YodO family protein 830730 8418509 Dret_0696 Desulfohalobium retbaense DSM 5692 lysine 2,3-aminomutase YodO family protein YP_003197566.1 829408 R 485915 CDS YP_003197567.1 258404825 8418510 831137..831985 1 NC_013223.1 PFAM: PGAP1 family protein; KEGG: dde:Dde_1837 acetyltransferase and hydrolase with the alpha/beta hydrolase fold-like; PGAP1 family protein 831985 8418510 Dret_0697 Desulfohalobium retbaense DSM 5692 PGAP1 family protein YP_003197567.1 831137 D 485915 CDS YP_003197568.1 258404826 8418511 complement(832059..832445) 1 NC_013223.1 KEGG: tgr:Tgr7_0019 hypothetical protein; hypothetical protein 832445 8418511 Dret_0698 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197568.1 832059 R 485915 CDS YP_003197569.1 258404827 8418512 complement(832617..832898) 1 NC_013223.1 hypothetical protein 832898 8418512 Dret_0699 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197569.1 832617 R 485915 CDS YP_003197570.1 258404828 8418513 complement(833022..833846) 1 NC_013223.1 PFAM: Ion transport 2 domain protein; KEGG: pca:Pcar_2531 hypothetical protein; Ion transport 2 domain-containing protein 833846 8418513 Dret_0700 Desulfohalobium retbaense DSM 5692 Ion transport 2 domain-containing protein YP_003197570.1 833022 R 485915 CDS YP_003197571.1 258404829 8418514 complement(834655..836013) 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dvl:Dvul_0090 two component, sigma54 specific, Fis family transcriptional regulator; two component, sigma54 specific, transcriptional regulator, Fis family 836013 8418514 Dret_0701 Desulfohalobium retbaense DSM 5692 two component, sigma54 specific, transcriptional regulator, Fis family YP_003197571.1 834655 R 485915 CDS YP_003197572.1 258404830 8418515 836196..836501 1 NC_013223.1 hypothetical protein 836501 8418515 Dret_0702 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197572.1 836196 D 485915 CDS YP_003197573.1 258404831 8418516 complement(836513..836917) 1 NC_013223.1 PFAM: helix-turn-helix HxlR type; KEGG: dde:Dde_1352 putative transcriptional regulator; HxlR family transcriptional regulator 836917 8418516 Dret_0703 Desulfohalobium retbaense DSM 5692 HxlR family transcriptional regulator YP_003197573.1 836513 R 485915 CDS YP_003197574.1 258404832 8418517 complement(837236..839629) 1 NC_013223.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: dal:Dalk_5266 pyruvate, water dikinase; pyruvate phosphate dikinase PEP/pyruvate- binding protein 839629 8418517 Dret_0704 Desulfohalobium retbaense DSM 5692 pyruvate phosphate dikinase PEP/pyruvate- binding protein YP_003197574.1 837236 R 485915 CDS YP_003197575.1 258404833 8418518 complement(839629..840666) 1 NC_013223.1 PFAM: glycosyl transferase group 1; KEGG: bja:bll6635 glycosyl transferase; group 1 glycosyl transferase 840666 8418518 Dret_0705 Desulfohalobium retbaense DSM 5692 group 1 glycosyl transferase YP_003197575.1 839629 R 485915 CDS YP_003197576.1 258404834 8418519 complement(840959..842815) 1 NC_013223.1 KEGG: sfu:Sfum_0551 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 842815 8418519 Dret_0706 Desulfohalobium retbaense DSM 5692 ATP-dependent metalloprotease FtsH YP_003197576.1 840959 R 485915 CDS YP_003197577.1 258404835 8418520 842881..843021 1 NC_013223.1 hypothetical protein 843021 8418520 Dret_0707 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197577.1 842881 D 485915 CDS YP_003197578.1 258404836 8418521 843444..844028 1 NC_013223.1 KEGG: sfu:Sfum_3317 drug resistance transporter, EmrB/QacA subfamily; hypothetical protein 844028 8418521 Dret_0708 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197578.1 843444 D 485915 CDS YP_003197579.1 258404837 8418522 844013..844345 1 NC_013223.1 KEGG: hypothetical protein; hypothetical protein 844345 8418522 Dret_0709 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197579.1 844013 D 485915 CDS YP_003197580.1 258404838 8418523 844517..845824 1 NC_013223.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; Protein of unknown function, PGPGW, transmembrane; KEGG: tbd:Tbd_2520 K+-dependent Na+/Ca+ exchanger related-protein; CaCA family Na+/Ca+ antiporter 845824 8418523 Dret_0710 Desulfohalobium retbaense DSM 5692 CaCA family Na+/Ca+ antiporter YP_003197580.1 844517 D 485915 CDS YP_003197581.1 258404839 8418524 complement(845862..846335) 1 NC_013223.1 KEGG: dma:DMR_24260 hypothetical protein; hypothetical protein 846335 8418524 Dret_0711 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197581.1 845862 R 485915 CDS YP_003197582.1 258404840 8418525 846532..848067 1 NC_013223.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE; KEGG: dma:DMR_16950 hypothetical membrane protein; integral membrane protein MviN 848067 8418525 Dret_0712 Desulfohalobium retbaense DSM 5692 integral membrane protein MviN YP_003197582.1 846532 D 485915 CDS YP_003197583.1 258404841 8418526 848067..848816 1 NC_013223.1 PFAM: methyltransferase small; putative RNA methylase; KEGG: dde:Dde_3501 hypothetical protein; methyltransferase small 848816 8418526 Dret_0713 Desulfohalobium retbaense DSM 5692 methyltransferase small YP_003197583.1 848067 D 485915 CDS YP_003197584.1 258404842 8418527 complement(848830..849513) 1 NC_013223.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dvm:DvMF_2848 CBS domain containing membrane protein; hypothetical protein 849513 8418527 Dret_0714 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197584.1 848830 R 485915 CDS YP_003197585.1 258404843 8418528 849600..850772 1 NC_013223.1 PFAM: protein of unknown function DUF111; KEGG: dde:Dde_0766 hypothetical protein; hypothetical protein 850772 8418528 Dret_0715 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197585.1 849600 D 485915 CDS YP_003197586.1 258404844 8418529 complement(850833..852059) 1 NC_013223.1 PFAM: peptidase U32; KEGG: dde:Dde_3095 U32 family peptidase; peptidase U32 852059 8418529 Dret_0716 Desulfohalobium retbaense DSM 5692 peptidase U32 YP_003197586.1 850833 R 485915 CDS YP_003197587.1 258404845 8418530 complement(852056..852931) 1 NC_013223.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dde:Dde_3094 phosphoesterase PHP-like; PHP domain-containing protein 852931 8418530 Dret_0717 Desulfohalobium retbaense DSM 5692 PHP domain-containing protein YP_003197587.1 852056 R 485915 CDS YP_003197588.1 258404846 8418531 853118..853321 1 NC_013223.1 PFAM: protein of unknown function DUF343; KEGG: dvu:DVU0656 hypothetical protein; hypothetical protein 853321 8418531 Dret_0718 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197588.1 853118 D 485915 CDS YP_003197589.1 258404847 8418532 853694..854107 1 NC_013223.1 PFAM: heat shock protein Hsp20; KEGG: dma:DMR_11450 heat shock protein HSP20 family protein; heat shock protein Hsp20 854107 8418532 Dret_0719 Desulfohalobium retbaense DSM 5692 heat shock protein Hsp20 YP_003197589.1 853694 D 485915 CDS YP_003197590.1 258404848 8418533 854154..854516 1 NC_013223.1 PFAM: heat shock protein Hsp20; KEGG: dma:DMR_11460 heat shock protein HSP20 family protein; heat shock protein Hsp20 854516 8418533 Dret_0720 Desulfohalobium retbaense DSM 5692 heat shock protein Hsp20 YP_003197590.1 854154 D 485915 CDS YP_003197591.1 258404849 8418534 854641..855483 1 NC_013223.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: dvl:Dvul_0185 TatD family hydrolase; TatD family hydrolase 855483 8418534 Dret_0721 Desulfohalobium retbaense DSM 5692 TatD family hydrolase YP_003197591.1 854641 D 485915 CDS YP_003197592.1 258404850 8418535 complement(855533..856264) 1 NC_013223.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: sfu:Sfum_0420 cyclic nucleotide-binding protein; Crp family transcriptional regulator 856264 8418535 Dret_0722 Desulfohalobium retbaense DSM 5692 Crp family transcriptional regulator YP_003197592.1 855533 R 485915 CDS YP_003197593.1 258404851 8418536 complement(856277..856714) 1 NC_013223.1 KEGG: dol:Dole_2356 hypothetical protein; hypothetical protein 856714 8418536 Dret_0723 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197593.1 856277 R 485915 CDS YP_003197594.1 258404852 8418537 complement(856787..857023) 1 NC_013223.1 KEGG: dde:Dde_0181 hypothetical protein; hypothetical protein 857023 8418537 Dret_0724 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197594.1 856787 R 485915 CDS YP_003197595.1 258404853 8418538 complement(857004..858065) 1 NC_013223.1 PFAM: peptidase M24; creatinase; KEGG: dvm:DvMF_1929 peptidase M24; peptidase M24 858065 8418538 Dret_0725 Desulfohalobium retbaense DSM 5692 peptidase M24 YP_003197595.1 857004 R 485915 CDS YP_003197596.1 258404854 8418539 858746..858946 1 NC_013223.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: mxa:MXAN_3269 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 858946 8418539 Dret_0726 Desulfohalobium retbaense DSM 5692 thiamine biosynthesis protein ThiS YP_003197596.1 858746 D 485915 CDS YP_003197597.1 258404855 8418540 858946..859731 1 NC_013223.1 PFAM: thiazole biosynthesis family protein; KEGG: dde:Dde_1555 thiazole synthase; thiazole biosynthesis family protein 859731 8418540 Dret_0727 Desulfohalobium retbaense DSM 5692 thiazole biosynthesis family protein YP_003197597.1 858946 D 485915 CDS YP_003197598.1 258404856 8418541 859871..860989 1 NC_013223.1 TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; KEGG: dde:Dde_1556 thiamine biosynthesis protein ThiH; thiazole biosynthesis protein ThiH 860989 8418541 Dret_0728 Desulfohalobium retbaense DSM 5692 thiazole biosynthesis protein ThiH YP_003197598.1 859871 D 485915 CDS YP_003197599.1 258404857 8418542 860986..861645 1 NC_013223.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dvm:DvMF_0798 thiamine biosynthesis protein ThiF; UBA/THIF-type NAD/FAD binding protein 861645 8418542 Dret_0729 Desulfohalobium retbaense DSM 5692 UBA/THIF-type NAD/FAD binding protein YP_003197599.1 860986 D 485915 CDS YP_003197600.1 258404858 8418543 861759..862409 1 NC_013223.1 KEGG: dvl:Dvul_1139 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 862409 8418543 Dret_0730 Desulfohalobium retbaense DSM 5692 thiamine-phosphate pyrophosphorylase YP_003197600.1 861759 D 485915 CDS YP_003197601.1 258404859 8418545 complement(863059..864087) 1 NC_013223.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dma:DMR_15300 hypothetical protein; radical SAM protein 864087 8418545 Dret_0731 Desulfohalobium retbaense DSM 5692 radical SAM protein YP_003197601.1 863059 R 485915 CDS YP_003197602.1 258404860 8418546 864624..865688 1 NC_013223.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 865688 8418546 Dret_0732 Desulfohalobium retbaense DSM 5692 phosphoribosylaminoimidazole synthetase YP_003197602.1 864624 D 485915 CDS YP_003197603.1 258404861 8418547 complement(865791..867062) 1 NC_013223.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dma:DMR_15340 hypothetical protein; radical SAM protein 867062 8418547 Dret_0733 Desulfohalobium retbaense DSM 5692 radical SAM protein YP_003197603.1 865791 R 485915 CDS YP_003197604.1 258404862 8418548 complement(867160..867552) 1 NC_013223.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 867552 rpsI 8418548 rpsI Desulfohalobium retbaense DSM 5692 30S ribosomal protein S9 YP_003197604.1 867160 R 485915 CDS YP_003197605.1 258404863 8418549 complement(867577..868014) 1 NC_013223.1 TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; KEGG: dde:Dde_2607 50S ribosomal protein L13; 50S ribosomal protein L13 868014 8418549 Dret_0735 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L13 YP_003197605.1 867577 R 485915 CDS YP_003197606.1 258404864 8418550 868353..869594 1 NC_013223.1 KEGG: dvl:Dvul_0727 hypothetical protein; hypothetical protein 869594 8418550 Dret_0736 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197606.1 868353 D 485915 CDS YP_003197607.1 258404865 8418551 870129..870584 1 NC_013223.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: dma:DMR_33360 protein MraZ; MraZ protein 870584 8418551 Dret_0737 Desulfohalobium retbaense DSM 5692 MraZ protein YP_003197607.1 870129 D 485915 CDS YP_003197608.1 258404866 8418552 870581..871579 1 NC_013223.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: dde:Dde_1034 methyltransferase; S-adenosyl-methyltransferase MraW 871579 mraW 8418552 mraW Desulfohalobium retbaense DSM 5692 S-adenosyl-methyltransferase MraW YP_003197608.1 870581 D 485915 CDS YP_003197609.1 258404867 8418553 871572..871844 1 NC_013223.1 KEGG: dma:DMR_33340 hypothetical protein; hypothetical protein 871844 8418553 Dret_0739 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197609.1 871572 D 485915 CDS YP_003197610.1 258404868 8418554 871872..873809 1 NC_013223.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: dma:DMR_33330 peptidoglycan synthetase FtsI precursor; peptidoglycan glycosyltransferase 873809 8418554 Dret_0740 Desulfohalobium retbaense DSM 5692 peptidoglycan glycosyltransferase YP_003197610.1 871872 D 485915 CDS YP_003197611.1 258404869 8418555 873832..875298 1 NC_013223.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: dvu:DVU2509 UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase; UDP-N-acetylmuramyl tripeptide synthetase 875298 8418555 Dret_0741 Desulfohalobium retbaense DSM 5692 UDP-N-acetylmuramyl tripeptide synthetase YP_003197611.1 873832 D 485915 CDS YP_003197612.1 258404870 8418556 875289..876671 1 NC_013223.1 TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-di aminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: dma:DMR_33310 UDP-N-acetylmuramoyl-tripeptide- -D-alanyl-D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase 876671 8418556 Dret_0742 Desulfohalobium retbaense DSM 5692 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase YP_003197612.1 875289 D 485915 CDS YP_003197613.1 258404871 8418557 876668..877744 1 NC_013223.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 877744 mraY 8418557 mraY Desulfohalobium retbaense DSM 5692 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_003197613.1 876668 D 485915 CDS YP_003197614.1 258404872 8418558 877754..879088 1 NC_013223.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: dma:DMR_33290 UDP-N-acetylmuramoylalanine--D- glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 879088 8418558 Dret_0744 Desulfohalobium retbaense DSM 5692 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_003197614.1 877754 D 485915 CDS YP_003197615.1 258404873 8418559 879066..880184 1 NC_013223.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: dma:DMR_33280 cell division protein FtsW; cell division protein FtsW 880184 8418559 Dret_0745 Desulfohalobium retbaense DSM 5692 cell division protein FtsW YP_003197615.1 879066 D 485915 CDS YP_003197616.1 258404874 8418560 880184..881311 1 NC_013223.1 KEGG: dvl:Dvul_0741 undecaprenyldiphospho- muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase 881311 8418560 Dret_0746 Desulfohalobium retbaense DSM 5692 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase YP_003197616.1 880184 D 485915 CDS YP_003197617.1 258404875 8418561 881325..882689 1 NC_013223.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 882689 murC 8418561 murC Desulfohalobium retbaense DSM 5692 UDP-N-acetylmuramate--L-alanine ligase YP_003197617.1 881325 D 485915 CDS YP_003197618.1 258404876 8418562 882851..883738 1 NC_013223.1 KEGG: dvl:Dvul_0743 UDP-N- acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 883738 8418562 Dret_0748 Desulfohalobium retbaense DSM 5692 UDP-N-acetylenolpyruvoylglucosamine reductase YP_003197618.1 882851 D 485915 CDS YP_003197619.1 258404877 8418563 883735..884556 1 NC_013223.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: dvm:DvMF_0953 polypeptide-transport- associated domain protein FtsQ-type; Polypeptide-transport-associated domain-containing protein FtsQ-type 884556 8418563 Dret_0749 Desulfohalobium retbaense DSM 5692 Polypeptide-transport-associated domain-containing protein FtsQ-type YP_003197619.1 883735 D 485915 CDS YP_003197620.1 258404878 8418564 884621..885853 1 NC_013223.1 TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: dvl:Dvul_0745 cell division protein FtsA; cell division protein FtsA 885853 8418564 Dret_0750 Desulfohalobium retbaense DSM 5692 cell division protein FtsA YP_003197620.1 884621 D 485915 CDS YP_003197621.1 258404879 8418565 885926..887200 1 NC_013223.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 887200 8418565 Dret_0751 Desulfohalobium retbaense DSM 5692 cell division protein FtsZ YP_003197621.1 885926 D 485915 CDS YP_003197622.1 258404880 8418566 complement(887549..889450) 1 NC_013223.1 molecular chaperone; heat shock protein 90 889450 8418566 Dret_0752 Desulfohalobium retbaense DSM 5692 heat shock protein 90 YP_003197622.1 887549 R 485915 CDS YP_003197623.1 258404881 8418567 889773..891692 1 NC_013223.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: sfu:Sfum_3195 molybdopterin oxidoreductase; nitrate reductase 891692 8418567 Dret_0753 Desulfohalobium retbaense DSM 5692 nitrate reductase YP_003197623.1 889773 D 485915 CDS YP_003197624.1 258404882 8418568 891682..893334 1 NC_013223.1 KEGG: dat:HRM2_18850 hypothetical protein; hypothetical protein 893334 8418568 Dret_0754 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197624.1 891682 D 485915 CDS YP_003197625.1 258404883 8418569 893635..894405 1 NC_013223.1 PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: dol:Dole_2023 hypothetical protein; nickel transport complex transmembrane protein NikM 894405 8418569 Dret_0755 Desulfohalobium retbaense DSM 5692 nickel transport complex transmembrane protein NikM YP_003197625.1 893635 D 485915 CDS YP_003197626.1 258404884 8418570 894509..895123 1 NC_013223.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dds:Ddes_1471 cobalamin (vitamin B12) biosynthesis CbiM protein; cobalamin (vitamin B12) biosynthesis protein CbiM 895123 8418570 Dret_0756 Desulfohalobium retbaense DSM 5692 cobalamin (vitamin B12) biosynthesis protein CbiM YP_003197626.1 894509 D 485915 CDS YP_003197627.1 258404885 8418571 895125..895742 1 NC_013223.1 KEGG: dds:Ddes_1472 hypothetical protein; hypothetical protein 895742 8418571 Dret_0757 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197627.1 895125 D 485915 CDS YP_003197628.1 258404886 8418572 895965..896453 1 NC_013223.1 PFAM: UspA domain protein; KEGG: afw:Anae109_0806 UspA domain-containing protein; UspA domain-containing protein 896453 8418572 Dret_0758 Desulfohalobium retbaense DSM 5692 UspA domain-containing protein YP_003197628.1 895965 D 485915 CDS YP_003197629.1 258404887 8418574 896872..898113 1 NC_013223.1 KEGG: dds:Ddes_1739 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 898113 8418574 Dret_0759 Desulfohalobium retbaense DSM 5692 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_003197629.1 896872 D 485915 CDS YP_003197630.1 258404888 8418575 898137..899555 1 NC_013223.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 899555 8418575 Dret_0760 Desulfohalobium retbaense DSM 5692 selenocysteine synthase YP_003197630.1 898137 D 485915 CDS YP_003197631.1 258404889 8418576 899805..901190 1 NC_013223.1 catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 901190 8418576 Dret_0761 Desulfohalobium retbaense DSM 5692 putative aminopeptidase YP_003197631.1 899805 D 485915 CDS YP_003197632.1 258404890 8418577 901196..903100 1 NC_013223.1 TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Elongation factor SelB winged helix 3; Elongation factor SelB winged helix 2; elongation factor Tu domain 2 protein; KEGG: dvl:Dvul_2441 selenocysteine-specific translation elongation factor; selenocysteine-specific translation elongation factor 903100 8418577 Dret_0762 Desulfohalobium retbaense DSM 5692 selenocysteine-specific translation elongation factor YP_003197632.1 901196 D 485915 CDS YP_003197633.1 258404891 8418579 903532..904785 1 NC_013223.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 904785 8418579 Dret_0763 Desulfohalobium retbaense DSM 5692 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_003197633.1 903532 D 485915 CDS YP_003197634.1 258404892 8418580 904899..907334 1 NC_013223.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: dde:Dde_0547 ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2 907334 8418580 Dret_0764 Desulfohalobium retbaense DSM 5692 DNA internalization-related competence protein ComEC/Rec2 YP_003197634.1 904899 D 485915 CDS YP_003197635.1 258404893 8418581 complement(907473..908465) 1 NC_013223.1 KEGG: dde:Dde_3607 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 908465 8418581 Dret_0765 Desulfohalobium retbaense DSM 5692 tryptophanyl-tRNA synthetase YP_003197635.1 907473 R 485915 CDS YP_003197636.1 258404894 8418582 complement(908784..909425) 1 NC_013223.1 PFAM: peptidase M50; KEGG: dma:DMR_30590 peptidase M50B family protein; peptidase M50 909425 8418582 Dret_0766 Desulfohalobium retbaense DSM 5692 peptidase M50 YP_003197636.1 908784 R 485915 CDS YP_003197637.1 258404895 8418583 complement(909599..910621) 1 NC_013223.1 PFAM: glycosyl transferase family 2; KEGG: dvm:DvMF_2329 glycosyl transferase family 2; family 2 glycosyl transferase 910621 8418583 Dret_0767 Desulfohalobium retbaense DSM 5692 family 2 glycosyl transferase YP_003197637.1 909599 R 485915 CDS YP_003197638.1 258404896 8418584 complement(910883..911794) 1 NC_013223.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dat:HRM2_29620 ABC-type glycine betaine/proline transport system, periplasmic glycine betaine/proline-binding protein; glycine/betaine ABC transporter substrate-binding protein 911794 8418584 Dret_0768 Desulfohalobium retbaense DSM 5692 glycine/betaine ABC transporter substrate-binding protein YP_003197638.1 910883 R 485915 CDS YP_003197639.1 258404897 8418585 complement(911826..912563) 1 NC_013223.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_29610 ABC-type glycine betaine/proline transport system, inner membrane permease protein; binding-protein-dependent transport system inner membrane protein 912563 8418585 Dret_0769 Desulfohalobium retbaense DSM 5692 binding-protein-dependent transport system inner membrane protein YP_003197639.1 911826 R 485915 CDS YP_003197640.1 258404898 8418586 complement(912560..913228) 1 NC_013223.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_2353 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 913228 8418586 Dret_0770 Desulfohalobium retbaense DSM 5692 binding-protein-dependent transport system inner membrane protein YP_003197640.1 912560 R 485915 CDS YP_003197641.1 258404899 8418587 complement(913243..914385) 1 NC_013223.1 KEGG: dat:HRM2_29570 ABC-type glycine betaine/proline transport system, ATP-binding protein (ATPase); TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 914385 8418587 Dret_0771 Desulfohalobium retbaense DSM 5692 glycine betaine/L-proline ABC transporter ATPase YP_003197641.1 913243 R 485915 CDS YP_003197642.1 258404900 8418588 complement(915226..916881) 1 NC_013223.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: dvu:DVU0283 AhpF family protein/thioredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 916881 8418588 Dret_0772 Desulfohalobium retbaense DSM 5692 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003197642.1 915226 R 485915 CDS YP_003197643.1 258404901 8418589 916970..917728 1 NC_013223.1 KEGG: gsu:GSU1612 phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 917728 8418589 Dret_0773 Desulfohalobium retbaense DSM 5692 phosphoglycerate mutase YP_003197643.1 916970 D 485915 CDS YP_003197644.1 258404902 8418590 917827..918780 1 NC_013223.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: gsu:GSU1528 ABC transporter, periplasmic substrate-binding protein; family 3 extracellular solute-binding protein 918780 8418590 Dret_0774 Desulfohalobium retbaense DSM 5692 family 3 extracellular solute-binding protein YP_003197644.1 917827 D 485915 CDS YP_003197645.1 258404903 8418591 918904..920061 1 NC_013223.1 PFAM: major facilitator superfamily MFS_1; KEGG: maq:Maqu_2048 major facilitator superfamily transporter; major facilitator superfamily protein 920061 8418591 Dret_0775 Desulfohalobium retbaense DSM 5692 major facilitator superfamily protein YP_003197645.1 918904 D 485915 CDS YP_003197646.1 258404904 8418592 complement(920169..921611) 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dvm:DvMF_1859 putative two component, sigma54 specific, transcriptional regulator, fis family; putative two component, sigma54 specific, transcriptional regulator, Fis family 921611 8418592 Dret_0776 Desulfohalobium retbaense DSM 5692 putative two component, sigma54 specific, transcriptional regulator, Fis family YP_003197646.1 920169 R 485915 CDS YP_003197647.1 258404905 8418593 complement(921724..924783) 1 NC_013223.1 KEGG: dvm:DvMF_1858 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 924783 8418593 Dret_0777 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor hybrid histidine kinase YP_003197647.1 921724 R 485915 CDS YP_003197648.1 258404906 8418594 complement(924896..926215) 1 NC_013223.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: dde:Dde_1253 malate dehydrogenase; Malate dehydrogenase (oxaloacetate- decarboxylating) (NADP(+)) 926215 8418594 Dret_0778 Desulfohalobium retbaense DSM 5692 Malate dehydrogenase (oxaloacetate- decarboxylating) (NADP(+)) YP_003197648.1 924896 R 485915 CDS YP_003197649.1 258404907 8418595 complement(926447..927019) 1 NC_013223.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy- lyase; PFAM: flavoprotein; KEGG: dvl:Dvul_0082 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 927019 8418595 Dret_0779 Desulfohalobium retbaense DSM 5692 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_003197649.1 926447 R 485915 CDS YP_003197650.1 258404908 8418597 927422..928156 1 NC_013223.1 TIGRFAM: SagB-type dehydrogenase domain; PFAM: nitroreductase; KEGG: dal:Dalk_3108 nitroreductase; SagB-type dehydrogenase domain-containing protein 928156 8418597 Dret_0780 Desulfohalobium retbaense DSM 5692 SagB-type dehydrogenase domain-containing protein YP_003197650.1 927422 D 485915 CDS YP_003197651.1 258404909 8418599 929072..930442 1 NC_013223.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 930442 proA 8418599 proA Desulfohalobium retbaense DSM 5692 gamma-glutamyl phosphate reductase YP_003197651.1 929072 D 485915 CDS YP_003197652.1 258404910 8418600 930445..931074 1 NC_013223.1 KEGG: dvm:DvMF_0613 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 931074 8418600 Dret_0782 Desulfohalobium retbaense DSM 5692 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_003197652.1 930445 D 485915 CDS YP_003197653.1 258404911 8418601 complement(931237..932109) 1 NC_013223.1 KEGG: dvl:Dvul_2509 hypothetical protein; hypothetical protein 932109 8418601 Dret_0783 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197653.1 931237 R 485915 CDS YP_003197654.1 258404912 8418602 complement(932253..932513) 1 NC_013223.1 hypothetical protein 932513 8418602 Dret_0784 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197654.1 932253 R 485915 CDS YP_003197655.1 258404913 8418603 complement(932647..934029) 1 NC_013223.1 KEGG: dvl:Dvul_0991 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; chromosomal replication initiator protein DnaA 934029 8418603 Dret_0785 Desulfohalobium retbaense DSM 5692 chromosomal replication initiator protein DnaA YP_003197655.1 932647 R 485915 CDS YP_003197656.1 258404914 8418604 complement(934362..934553) 1 NC_013223.1 KEGG: dma:DMR_03780 hypothetical protein; hypothetical protein 934553 8418604 Dret_0786 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197656.1 934362 R 485915 CDS YP_003197657.1 258404915 8418605 complement(934642..935154) 1 NC_013223.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: dat:HRM2_35320 putative cyclic nucleotide- binding protein; Crp family transcriptional regulator 935154 8418605 Dret_0787 Desulfohalobium retbaense DSM 5692 Crp family transcriptional regulator YP_003197657.1 934642 R 485915 CDS YP_003197658.1 258404916 8418606 complement(935170..936936) 1 NC_013223.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rec:RHECIAT_CH0003629 putative monovalent cation/H+ antiporter subunit D; NADH/ubiquinone/plastoquinone 936936 8418606 Dret_0788 Desulfohalobium retbaense DSM 5692 NADH/ubiquinone/plastoquinone YP_003197658.1 935170 R 485915 CDS YP_003197659.1 258404917 8418607 complement(936929..937417) 1 NC_013223.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rhi:NGR_c22160 hypothetical protein; biotin/lipoyl attachment domain-containing protein 937417 8418607 Dret_0789 Desulfohalobium retbaense DSM 5692 biotin/lipoyl attachment domain-containing protein YP_003197659.1 936929 R 485915 CDS YP_003197660.1 258404918 8418608 complement(937424..938926) 1 NC_013223.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: dat:HRM2_35350 MnhA2; NADH/ubiquinone/plastoquinone 938926 8418608 Dret_0790 Desulfohalobium retbaense DSM 5692 NADH/ubiquinone/plastoquinone YP_003197660.1 937424 R 485915 CDS YP_003197661.1 258404919 8418609 complement(939051..940541) 1 NC_013223.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: dal:Dalk_4922 NADH dehydrogenase (quinone); NADH/ubiquinone/plastoquinone 940541 8418609 Dret_0791 Desulfohalobium retbaense DSM 5692 NADH/ubiquinone/plastoquinone YP_003197661.1 939051 R 485915 CDS YP_003197662.1 258404920 8418610 complement(940538..940939) 1 NC_013223.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: dal:Dalk_4921 NADH-ubiquinone oxidoreductase chain 4L; NADH-ubiquinone oxidoreductase chain 4L 940939 8418610 Dret_0792 Desulfohalobium retbaense DSM 5692 NADH-ubiquinone oxidoreductase chain 4L YP_003197662.1 940538 R 485915 CDS YP_003197663.1 258404921 8418612 complement(942007..942348) 1 NC_013223.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: dat:HRM2_35390 MnhG; monovalent cation/proton antiporter subunit MnhG/PhaG 942348 8418612 Dret_0794 Desulfohalobium retbaense DSM 5692 monovalent cation/proton antiporter subunit MnhG/PhaG YP_003197663.1 942007 R 485915 CDS YP_003197664.1 258404922 8418613 complement(942406..942699) 1 NC_013223.1 PFAM: multiple resistance and pH regulation protein F; KEGG: dal:Dalk_4918 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F 942699 8418613 Dret_0795 Desulfohalobium retbaense DSM 5692 multiple resistance and pH regulation protein F YP_003197664.1 942406 R 485915 CDS YP_003197665.1 258404923 8418614 complement(942701..943288) 1 NC_013223.1 PFAM: cation antiporter; KEGG: dat:HRM2_35410 MnhE; cation antiporter 943288 8418614 Dret_0796 Desulfohalobium retbaense DSM 5692 cation antiporter YP_003197665.1 942701 R 485915 CDS YP_003197666.1 258404924 8418615 complement(943580..944053) 1 NC_013223.1 KEGG: dma:DMR_23660 hypothetical protein; hypothetical protein 944053 8418615 Dret_0797 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197666.1 943580 R 485915 CDS YP_003197667.1 258404925 8418616 complement(944302..945504) 1 NC_013223.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 945504 8418616 Dret_0798 Desulfohalobium retbaense DSM 5692 tryptophan synthase subunit beta YP_003197667.1 944302 R 485915 CDS YP_003197668.1 258404926 8418617 945789..947786 1 NC_013223.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 947786 8418617 Dret_0799 Desulfohalobium retbaense DSM 5692 excinuclease ABC subunit B YP_003197668.1 945789 D 485915 CDS YP_003197669.1 258404927 8418618 947895..948890 1 NC_013223.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: dma:DMR_23650 potassium channel protein; TrkA-N domain-containing protein 948890 8418618 Dret_0800 Desulfohalobium retbaense DSM 5692 TrkA-N domain-containing protein YP_003197669.1 947895 D 485915 CDS YP_003197670.1 258404928 8418619 949100..951136 1 NC_013223.1 KEGG: dvu:DVU1608 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4- type; NAD-dependent DNA ligase OB-fold; SMART: NAD-dependent DNA ligase ; BRCT domain protein; NAD-dependent DNA ligase 951136 8418619 Dret_0801 Desulfohalobium retbaense DSM 5692 NAD-dependent DNA ligase YP_003197670.1 949100 D 485915 CDS YP_003197671.1 258404929 8418620 complement(951257..952039) 1 NC_013223.1 PFAM: protein of unknown function DUF362; KEGG: pca:Pcar_2517 putative iron-sulfur cluster- binding protein; hypothetical protein 952039 8418620 Dret_0802 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197671.1 951257 R 485915 CDS YP_003197672.1 258404930 8418621 952169..952960 1 NC_013223.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 952960 8418621 Dret_0803 Desulfohalobium retbaense DSM 5692 dihydrodipicolinate reductase YP_003197672.1 952169 D 485915 CDS YP_003197673.1 258404931 8418622 953027..953935 1 NC_013223.1 KEGG: dvl:Dvul_1993 hypothetical protein; hypothetical protein 953935 8418622 Dret_0804 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197673.1 953027 D 485915 CDS YP_003197674.1 258404932 8418623 953945..954649 1 NC_013223.1 TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: dma:DMR_23960 outer membrane lipoprotein carrier protein precursor; outer membrane lipoprotein carrier protein LolA 954649 8418623 Dret_0805 Desulfohalobium retbaense DSM 5692 outer membrane lipoprotein carrier protein LolA YP_003197674.1 953945 D 485915 CDS YP_003197675.1 258404933 8418624 complement(954796..955620) 1 NC_013223.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: dvm:DvMF_0369 pseudouridine synthase; pseudouridine synthase 955620 8418624 Dret_0806 Desulfohalobium retbaense DSM 5692 pseudouridine synthase YP_003197675.1 954796 R 485915 CDS YP_003197676.1 258404934 8418625 complement(955943..956578) 1 NC_013223.1 TIGRFAM: selenium metabolism protein YedF; PFAM: SirA family protein; KEGG: dvm:DvMF_0368 hypothetical protein; selenium metabolism protein YedF 956578 8418625 Dret_0807 Desulfohalobium retbaense DSM 5692 selenium metabolism protein YedF YP_003197676.1 955943 R 485915 CDS YP_003197677.1 258404935 8418626 956753..957403 1 NC_013223.1 PFAM: protein of unknown function DUF374; KEGG: dvm:DvMF_0366 protein of unknown function DUF374; hypothetical protein 957403 8418626 Dret_0808 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197677.1 956753 D 485915 CDS YP_003197678.1 258404936 8418627 957396..958280 1 NC_013223.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: dvm:DvMF_0365 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 958280 8418627 Dret_0809 Desulfohalobium retbaense DSM 5692 lipid A biosynthesis acyltransferase YP_003197678.1 957396 D 485915 CDS YP_003197679.1 258404937 8418628 958277..958936 1 NC_013223.1 PFAM: SUA5/yciO/yrdC domain; KEGG: dma:DMR_22900 hypothetical protein; SUA5/yciO/yrdC domain-containing protein 958936 8418628 Dret_0810 Desulfohalobium retbaense DSM 5692 SUA5/yciO/yrdC domain-containing protein YP_003197679.1 958277 D 485915 CDS YP_003197680.1 258404938 8418629 complement(959449..960444) 1 NC_013223.1 PFAM: glycosyl transferase family 9; KEGG: dma:DMR_22890 putative glycosyltransferase; glycosyl transferase family protein 960444 8418629 Dret_0811 Desulfohalobium retbaense DSM 5692 glycosyl transferase family protein YP_003197680.1 959449 R 485915 CDS YP_003197681.1 258404939 8418630 960568..961068 1 NC_013223.1 PFAM: NUDIX hydrolase; KEGG: dde:Dde_2287 MutT/NUDIX family protein; NUDIX hydrolase 961068 8418630 Dret_0812 Desulfohalobium retbaense DSM 5692 NUDIX hydrolase YP_003197681.1 960568 D 485915 CDS YP_003197682.1 258404940 8418631 961056..961955 1 NC_013223.1 PFAM: ROK family protein; KEGG: gbm:Gbem_1326 ROK family protein; ROK family protein 961955 8418631 Dret_0813 Desulfohalobium retbaense DSM 5692 ROK family protein YP_003197682.1 961056 D 485915 CDS YP_003197683.1 258404941 8418632 962046..963512 1 NC_013223.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; KEGG: dvm:DvMF_0841 glycogen/starch synthase, ADP- glucose type; glycogen/starch synthase 963512 8418632 Dret_0814 Desulfohalobium retbaense DSM 5692 glycogen/starch synthase YP_003197683.1 962046 D 485915 CDS YP_003197684.1 258404942 8418633 964014..964319 1 NC_013223.1 PFAM: glycoside hydrolase family 13 domain protein; KEGG: dma:DMR_37990 hypothetical protein; glycoside hydrolase family 13 964319 8418633 Dret_0815 Desulfohalobium retbaense DSM 5692 glycoside hydrolase family 13 YP_003197684.1 964014 D 485915 CDS YP_003197685.1 258404943 8418634 964319..965335 1 NC_013223.1 KEGG: dma:DMR_22850 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 965335 8418634 Dret_0816 Desulfohalobium retbaense DSM 5692 4-hydroxythreonine-4-phosphate dehydrogenase YP_003197685.1 964319 D 485915 CDS YP_003197686.1 258404944 8418635 965449..966003 1 NC_013223.1 PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: dde:Dde_2318 transcriptional regulator; XRE family transcriptional regulator 966003 8418635 Dret_0817 Desulfohalobium retbaense DSM 5692 XRE family transcriptional regulator YP_003197686.1 965449 D 485915 CDS YP_003197687.1 258404945 8418636 966115..967764 1 NC_013223.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dvm:DvMF_0003 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 967764 8418636 Dret_0818 Desulfohalobium retbaense DSM 5692 AMP-dependent synthetase and ligase YP_003197687.1 966115 D 485915 CDS YP_003197688.1 258404946 8418637 968370..969131 1 NC_013223.1 KEGG: lpf:lpl0227 hypothetical protein; hypothetical protein 969131 8418637 Dret_0819 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197688.1 968370 D 485915 CDS YP_003197689.1 258404947 8418638 complement(969225..969641) 1 NC_013223.1 hypothetical protein 969641 8418638 Dret_0820 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197689.1 969225 R 485915 CDS YP_003197690.1 258404948 8418639 complement(970015..970887) 1 NC_013223.1 KEGG: dar:Daro_0659 hypothetical protein; hypothetical protein 970887 8418639 Dret_0821 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197690.1 970015 R 485915 CDS YP_003197691.1 258404949 8418640 971740..972411 1 NC_013223.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: eic:NT01EI_1213 nitrate/nitrite response regulator protein NarP; two component transcriptional regulator, LuxR family 972411 8418640 Dret_0822 Desulfohalobium retbaense DSM 5692 two component transcriptional regulator, LuxR family YP_003197691.1 971740 D 485915 CDS YP_003197692.1 258404950 8418641 972652..975093 1 NC_013223.1 PFAM: peptidase S16 lon domain protein; KEGG: ade:Adeh_1447 ATP-dependent protease, putative; peptidase S16 lon domain-containing protein 975093 8418641 Dret_0823 Desulfohalobium retbaense DSM 5692 peptidase S16 lon domain-containing protein YP_003197692.1 972652 D 485915 CDS YP_003197693.1 258404951 8418642 975083..975949 1 NC_013223.1 PFAM: UspA domain protein; KEGG: aeh:Mlg_1516 UspA domain-containing protein; UspA domain-containing protein 975949 8418642 Dret_0824 Desulfohalobium retbaense DSM 5692 UspA domain-containing protein YP_003197693.1 975083 D 485915 CDS YP_003197694.1 258404952 8418643 976131..977711 1 NC_013223.1 PFAM: Stage II sporulation E family protein; response regulator receiver; SMART: protein phosphatase 2C domain protein; response regulator receiver; KEGG: sat:SYN_00230 response regulator receiver domain-containing protein; response regulator receiver modulated serine phosphatase 977711 8418643 Dret_0825 Desulfohalobium retbaense DSM 5692 response regulator receiver modulated serine phosphatase YP_003197694.1 976131 D 485915 CDS YP_003197695.1 258404953 8418644 complement(977742..978380) 1 NC_013223.1 KEGG: dde:Dde_1491 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; SMART: HhH-GPD family protein; iron-sulfur cluster loop; endonuclease III 978380 8418644 Dret_0826 Desulfohalobium retbaense DSM 5692 endonuclease III YP_003197695.1 977742 R 485915 CDS YP_003197696.1 258404954 8418645 978507..978776 1 NC_013223.1 KEGG: dvm:DvMF_1980 hypothetical protein; hypothetical protein 978776 8418645 Dret_0827 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197696.1 978507 D 485915 CDS YP_003197697.1 258404955 8418646 978857..979207 1 NC_013223.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: dal:Dalk_3429 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 979207 8418646 Dret_0828 Desulfohalobium retbaense DSM 5692 CutA1 divalent ion tolerance protein YP_003197697.1 978857 D 485915 CDS YP_003197698.1 258404956 8418647 979204..980283 1 NC_013223.1 KEGG: dma:DMR_17290 hypothetical protein; hypothetical protein 980283 8418647 Dret_0829 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197698.1 979204 D 485915 CDS YP_003197699.1 258404957 8418648 980806..983100 1 NC_013223.1 TIGRFAM: cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Cysteinyl-tRNA synthetase class Ia; KEGG: dma:DMR_30710 cysteine synthase B; cysteine synthase 983100 8418648 Dret_0830 Desulfohalobium retbaense DSM 5692 cysteine synthase YP_003197699.1 980806 D 485915 CDS YP_003197700.1 258404958 8418649 complement(983387..984940) 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; GAF domain protein; KEGG: dde:Dde_1635 Fis family transcriptional regulator; Fis family NifA subfamily transcriptional regulator 984940 8418649 Dret_0831 Desulfohalobium retbaense DSM 5692 Fis family NifA subfamily transcriptional regulator YP_003197700.1 983387 R 485915 CDS YP_003197701.1 258404959 8418650 complement(984943..985533) 1 NC_013223.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: dvl:Dvul_1218 indolepyruvate ferredoxin oxidoreductase; Indolepyruvate ferredoxin oxidoreductase 985533 8418650 Dret_0832 Desulfohalobium retbaense DSM 5692 Indolepyruvate ferredoxin oxidoreductase YP_003197701.1 984943 R 485915 CDS YP_003197702.1 258404960 8418651 complement(985526..987373) 1 NC_013223.1 KEGG: dvu:DVU1951 indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; indolepyruvate ferredoxin oxidoreductase subunit alpha 987373 8418651 Dret_0833 Desulfohalobium retbaense DSM 5692 indolepyruvate ferredoxin oxidoreductase subunit alpha YP_003197702.1 985526 R 485915 CDS YP_003197703.1 258404961 8418652 complement(987653..988327) 1 NC_013223.1 KEGG: dvm:DvMF_0611 hypothetical protein; hypothetical protein 988327 8418652 Dret_0834 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197703.1 987653 R 485915 CDS YP_003197704.1 258404962 8418653 complement(988629..991757) 1 NC_013223.1 PFAM: acriflavin resistance protein; KEGG: dde:Dde_2381 acriflavin resistance protein D; acriflavin resistance protein 991757 8418653 Dret_0835 Desulfohalobium retbaense DSM 5692 acriflavin resistance protein YP_003197704.1 988629 R 485915 CDS YP_003197705.1 258404963 8418654 complement(991904..992995) 1 NC_013223.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dde:Dde_3628 secretion protein HlyD; RND family efflux transporter MFP subunit 992995 8418654 Dret_0836 Desulfohalobium retbaense DSM 5692 RND family efflux transporter MFP subunit YP_003197705.1 991904 R 485915 CDS YP_003197706.1 258404964 8418655 993291..994721 1 NC_013223.1 KEGG: dvm:DvMF_0308 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; protease Do 994721 8418655 Dret_0837 Desulfohalobium retbaense DSM 5692 protease Do YP_003197706.1 993291 D 485915 CDS YP_003197707.1 258404965 8418656 994942..995811 1 NC_013223.1 KEGG: dde:Dde_2125 4-diphosphocytidyl-2-C-methyl-D- erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 995811 8418656 Dret_0838 Desulfohalobium retbaense DSM 5692 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_003197707.1 994942 D 485915 CDS YP_003197708.1 258404966 8418658 995916..996869 1 NC_013223.1 KEGG: dvm:DvMF_0487 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 996869 8418658 Dret_0839 Desulfohalobium retbaense DSM 5692 ribose-phosphate pyrophosphokinase YP_003197708.1 995916 D 485915 CDS YP_003197709.1 258404967 8418659 996900..997541 1 NC_013223.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal protein L25-like; KEGG: dma:DMR_29440 50S ribosomal protein L25; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 997541 8418659 Dret_0840 Desulfohalobium retbaense DSM 5692 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_003197709.1 996900 D 485915 CDS YP_003197710.1 258404968 8418660 997800..998393 1 NC_013223.1 KEGG: dde:Dde_2128 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 998393 8418660 Dret_0841 Desulfohalobium retbaense DSM 5692 peptidyl-tRNA hydrolase YP_003197710.1 997800 D 485915 CDS YP_003197711.1 258404969 8418661 998477..999001 1 NC_013223.1 PFAM: transcription factor CarD; KEGG: dma:DMR_29460 hypothetical protein; BadM/Rrf2 family transcriptional regulator 999001 8418661 Dret_0842 Desulfohalobium retbaense DSM 5692 BadM/Rrf2 family transcriptional regulator YP_003197711.1 998477 D 485915 CDS YP_003197712.1 258404970 8418662 999635..1000882 1 NC_013223.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1000882 rho 8418662 rho Desulfohalobium retbaense DSM 5692 transcription termination factor Rho YP_003197712.1 999635 D 485915 CDS YP_003197713.1 258404971 8418663 1001183..1002595 1 NC_013223.1 PFAM: peptidase M48 Ste24p; KEGG: dvm:DvMF_0483 peptidase M48 Ste24p; peptidase M48 Ste24p 1002595 8418663 Dret_0844 Desulfohalobium retbaense DSM 5692 peptidase M48 Ste24p YP_003197713.1 1001183 D 485915 CDS YP_003197714.1 258404972 8418664 1002765..1003196 1 NC_013223.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: dde:Dde_1817 protein translocase subunit YajC; preprotein translocase subunit YajC 1003196 8418664 Dret_0845 Desulfohalobium retbaense DSM 5692 preprotein translocase subunit YajC YP_003197714.1 1002765 D 485915 CDS YP_003197715.1 258404973 8418665 1003209..1004810 1 NC_013223.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1004810 secD 8418665 secD Desulfohalobium retbaense DSM 5692 preprotein translocase subunit SecD YP_003197715.1 1003209 D 485915 CDS YP_003197716.1 258404974 8418666 1004824..1005903 1 NC_013223.1 TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: dde:Dde_1819 preprotein translocase subunit SecF; protein-export membrane protein SecF 1005903 8418666 Dret_0847 Desulfohalobium retbaense DSM 5692 protein-export membrane protein SecF YP_003197716.1 1004824 D 485915 CDS YP_003197717.1 258404975 8418667 1006143..1006325 1 NC_013223.1 hypothetical protein 1006325 8418667 Dret_0848 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197717.1 1006143 D 485915 CDS YP_003197718.1 258404976 8418668 1006388..1007788 1 NC_013223.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: sfu:Sfum_3200 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 1007788 8418668 Dret_0849 Desulfohalobium retbaense DSM 5692 RNA-directed DNA polymerase YP_003197718.1 1006388 D 485915 CDS YP_003197719.1 258404977 8418669 complement(1007882..1008865) 1 NC_013223.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 1008865 glpX 8418669 glpX Desulfohalobium retbaense DSM 5692 fructose 1,6-bisphosphatase II YP_003197719.1 1007882 R 485915 CDS YP_003197720.1 258404978 8418670 complement(1008894..1010876) 1 NC_013223.1 TIGRFAM: transketolase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: dma:DMR_21080 transketolase; transketolase 1010876 8418670 Dret_0851 Desulfohalobium retbaense DSM 5692 transketolase YP_003197720.1 1008894 R 485915 CDS YP_003197721.1 258404979 8418671 complement(1011038..1011490) 1 NC_013223.1 KEGG: dvm:DvMF_0481 sugar-phosphate isomerase, RpiB/LacA/LacB family; TIGRFAM: ribose 5-phosphate isomerase B; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; ribose 5-phosphate isomerase B 1011490 8418671 Dret_0852 Desulfohalobium retbaense DSM 5692 ribose 5-phosphate isomerase B YP_003197721.1 1011038 R 485915 CDS YP_003197722.1 258404980 8418672 complement(1011763..1012101) 1 NC_013223.1 KEGG: dvl:Dvul_1552 hypothetical protein; hypothetical protein 1012101 8418672 Dret_0853 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197722.1 1011763 R 485915 CDS YP_003197723.1 258404981 8418673 complement(1012267..1012386) 1 NC_013223.1 hypothetical protein 1012386 8418673 Dret_0854 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197723.1 1012267 R 485915 CDS YP_003197724.1 258404982 8418674 complement(1012397..1013197) 1 NC_013223.1 KEGG: dma:DMR_21100 hypothetical protein; hypothetical protein 1013197 8418674 Dret_0855 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197724.1 1012397 R 485915 CDS YP_003197725.1 258404983 8418675 complement(1013194..1014885) 1 NC_013223.1 PFAM: Tetratricopeptide TPR_2 repeat protein; Tetratricopeptide TPR_4; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: dvm:DvMF_0478 tetratricopeptide TPR_2 repeat protein; hypothetical protein 1014885 8418675 Dret_0856 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197725.1 1013194 R 485915 CDS YP_003197726.1 258404984 8418676 complement(1015188..1015973) 1 NC_013223.1 KEGG: dal:Dalk_1411 hypothetical protein; hypothetical protein 1015973 8418676 Dret_0857 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197726.1 1015188 R 485915 CDS YP_003197727.1 258404985 8418677 complement(1015966..1017018) 1 NC_013223.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: dma:DMR_21120 RNA polymerase sigma factor; putative RNA polymerase sigma 70 family subunit 1017018 8418677 Dret_0858 Desulfohalobium retbaense DSM 5692 putative RNA polymerase sigma 70 family subunit YP_003197727.1 1015966 R 485915 CDS YP_003197728.1 258404986 8418678 1017227..1019641 1 NC_013223.1 PFAM: homocysteine S-methyltransferase; cobalamin B12-binding domain protein; Methionine synthase B12- binding module cap domain protein; dihydropteroate synthase DHPS; KEGG: dde:Dde_2115 methionine synthase (B12- dependent); homocysteine S-methyltransferase 1019641 8418678 Dret_0859 Desulfohalobium retbaense DSM 5692 homocysteine S-methyltransferase YP_003197728.1 1017227 D 485915 CDS YP_003197729.1 258404987 8418679 1019657..1020145 1 NC_013223.1 PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dma:DMR_21140 thioredoxin-related domain protein; redoxin domain-containing protein 1020145 8418679 Dret_0860 Desulfohalobium retbaense DSM 5692 redoxin domain-containing protein YP_003197729.1 1019657 D 485915 CDS YP_003197730.1 258404988 8418680 1020129..1020608 1 NC_013223.1 catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate; acetyltransferase 1020608 8418680 Dret_0861 Desulfohalobium retbaense DSM 5692 acetyltransferase YP_003197730.1 1020129 D 485915 CDS YP_003197731.1 258404989 8418681 1020998..1021540 1 NC_013223.1 KEGG: dde:Dde_2112 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 1021540 8418681 Dret_0862 Desulfohalobium retbaense DSM 5692 hypoxanthine phosphoribosyltransferase YP_003197731.1 1020998 D 485915 CDS YP_003197732.1 258404990 8418682 1021720..1022490 1 NC_013223.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: dvu:DVU1589 hypothetical protein; hypothetical protein 1022490 8418682 Dret_0863 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197732.1 1021720 D 485915 CDS YP_003197733.1 258404991 8418683 1022816..1024162 1 NC_013223.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1024162 8418683 Dret_0864 Desulfohalobium retbaense DSM 5692 DNA repair protein RadA YP_003197733.1 1022816 D 485915 CDS YP_003197734.1 258404992 8418684 1024223..1024618 1 NC_013223.1 KEGG: sat:SYN_02712 hypothetical protein; hypothetical protein 1024618 8418684 Dret_0865 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197734.1 1024223 D 485915 CDS YP_003197735.1 258404993 8418685 complement(1024742..1024972) 1 NC_013223.1 KEGG: dde:Dde_2292 hypothetical protein; hypothetical protein 1024972 8418685 Dret_0866 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197735.1 1024742 R 485915 CDS YP_003197736.1 258404994 8418686 complement(1025267..1025728) 1 NC_013223.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dvm:DvMF_2591 transcriptional regulator, BadM/Rrf2 family; AsnC family transcriptional regulator 1025728 8418686 Dret_0867 Desulfohalobium retbaense DSM 5692 AsnC family transcriptional regulator YP_003197736.1 1025267 R 485915 CDS YP_003197737.1 258404995 8418687 complement(1025856..1027808) 1 NC_013223.1 KEGG: dvl:Dvul_2720 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; multi-sensor signal transduction histidine kinase 1027808 8418687 Dret_0868 Desulfohalobium retbaense DSM 5692 multi-sensor signal transduction histidine kinase YP_003197737.1 1025856 R 485915 CDS YP_003197738.1 258404996 8418688 complement(1028022..1028381) 1 NC_013223.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dde:Dde_3714 response regulator receiver domain-containing protein; response regulator receiver protein 1028381 8418688 Dret_0869 Desulfohalobium retbaense DSM 5692 response regulator receiver protein YP_003197738.1 1028022 R 485915 CDS YP_003197739.1 258404997 8418689 complement(1028438..1028791) 1 NC_013223.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dol:Dole_2257 response regulator receiver protein; response regulator receiver protein 1028791 8418689 Dret_0870 Desulfohalobium retbaense DSM 5692 response regulator receiver protein YP_003197739.1 1028438 R 485915 CDS YP_003197740.1 258404998 8418690 complement(1028924..1029838) 1 NC_013223.1 PFAM: UspA domain protein; KEGG: dol:Dole_2256 UspA domain-containing protein; UspA domain-containing protein 1029838 8418690 Dret_0871 Desulfohalobium retbaense DSM 5692 UspA domain-containing protein YP_003197740.1 1028924 R 485915 CDS YP_003197741.1 258404999 8418691 complement(1029906..1031291) 1 NC_013223.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dvm:DvMF_2593 protein of unknown function DUF224 cysteine-rich region domain protein; hypothetical protein 1031291 8418691 Dret_0872 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197741.1 1029906 R 485915 CDS YP_003197742.1 258405000 8418692 complement(1031370..1032047) 1 NC_013223.1 KEGG: dol:Dole_2254 hmc operon protein 5; hmc operon protein 5 1032047 8418692 Dret_0873 Desulfohalobium retbaense DSM 5692 hmc operon protein 5 YP_003197742.1 1031370 R 485915 CDS YP_003197743.1 258405001 8418693 complement(1032072..1032203) 1 NC_013223.1 KEGG: dde:Dde_0650 hmc operon protein 4; hmc operon protein 4 1032203 8418693 Dret_0874 Desulfohalobium retbaense DSM 5692 hmc operon protein 4 YP_003197743.1 1032072 R 485915 CDS YP_003197744.1 258405002 8418694 complement(1032219..1033427) 1 NC_013223.1 PFAM: Polysulphide reductase NrfD; KEGG: dol:Dole_2252 polysulphide reductase NrfD; polysulfide reductase NrfD 1033427 8418694 Dret_0875 Desulfohalobium retbaense DSM 5692 polysulfide reductase NrfD YP_003197744.1 1032219 R 485915 CDS YP_003197745.1 258405003 8418695 complement(1033428..1034486) 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0652 hypothetical protein; 4Fe-4S ferredoxin 1034486 8418695 Dret_0876 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003197745.1 1033428 R 485915 CDS YP_003197746.1 258405004 8418696 complement(1034588..1036261) 1 NC_013223.1 PFAM: cytochrome c class III; KEGG: dvl:Dvul_2405 cytochrome c, class III; cytochrome c class III 1036261 8418696 Dret_0877 Desulfohalobium retbaense DSM 5692 cytochrome c class III YP_003197746.1 1034588 R 485915 CDS YP_003197747.1 258405005 8418697 complement(1036483..1038765) 1 NC_013223.1 KEGG: dvm:DvMF_2548 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS/PAC sensor signal transduction histidine kinase 1038765 8418697 Dret_0878 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor signal transduction histidine kinase YP_003197747.1 1036483 R 485915 CDS YP_003197748.1 258405006 8418698 1039002..1039493 1 NC_013223.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dvm:DvMF_2591 transcriptional regulator, BadM/Rrf2 family; AsnC family transcriptional regulator 1039493 8418698 Dret_0879 Desulfohalobium retbaense DSM 5692 AsnC family transcriptional regulator YP_003197748.1 1039002 D 485915 CDS YP_003197749.1 258405007 8418699 complement(1039577..1039957) 1 NC_013223.1 KEGG: similar to GTPase, IMAP family member 8; hypothetical protein 1039957 8418699 Dret_0880 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197749.1 1039577 R 485915 CDS YP_003197750.1 258405008 8418700 1040136..1041173 1 NC_013223.1 KEGG: dma:DMR_11630 lipoate-protein ligase; TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; Lipoate protein ligase-like; lipoyltransferase and lipoate-protein ligase 1041173 8418700 Dret_0881 Desulfohalobium retbaense DSM 5692 lipoyltransferase and lipoate-protein ligase YP_003197750.1 1040136 D 485915 CDS YP_003197751.1 258405009 8418701 complement(1041626..1042228) 1 NC_013223.1 hypothetical protein 1042228 8418701 Dret_0882 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197751.1 1041626 R 485915 CDS YP_003197752.1 258405010 8418702 1042349..1043749 1 NC_013223.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: sfu:Sfum_3200 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 1043749 8418702 Dret_0883 Desulfohalobium retbaense DSM 5692 RNA-directed DNA polymerase YP_003197752.1 1042349 D 485915 CDS YP_003197753.1 258405011 8418703 complement(1043840..1047046) 1 NC_013223.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dde:Dde_1564 DEAD/DEAH box helicase-like; SNF2-like protein 1047046 8418703 Dret_0884 Desulfohalobium retbaense DSM 5692 SNF2-like protein YP_003197753.1 1043840 R 485915 CDS YP_003197754.1 258405012 8418704 1047613..1049814 1 NC_013223.1 KEGG: dde:Dde_1569 metal dependent phosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 1049814 8418704 Dret_0885 Desulfohalobium retbaense DSM 5692 (p)ppGpp synthetase I SpoT/RelA YP_003197754.1 1047613 D 485915 CDS YP_003197755.1 258405013 8418705 1049824..1049997 1 NC_013223.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_2749 rubredoxin; rubredoxin-type Fe(Cys)4 protein 1049997 8418705 Dret_0886 Desulfohalobium retbaense DSM 5692 rubredoxin-type Fe(Cys)4 protein YP_003197755.1 1049824 D 485915 CDS YP_003197756.1 258405014 8418707 1050396..1051886 1 NC_013223.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; GAF domain protein; Metal- dependent hydrolase HDOD; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; GAF domain protein; KEGG: scl:sce2546 putative regulatory protein; response regulator receiver modulated metal dependent phosphohydrolase 1051886 8418707 Dret_0887 Desulfohalobium retbaense DSM 5692 response regulator receiver modulated metal dependent phosphohydrolase YP_003197756.1 1050396 D 485915 CDS YP_003197757.1 258405015 8418708 complement(1052016..1052990) 1 NC_013223.1 KEGG: dde:Dde_1579 hypothetical protein; hypothetical protein 1052990 8418708 Dret_0888 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197757.1 1052016 R 485915 CDS YP_003197758.1 258405016 8418709 1053098..1053883 1 NC_013223.1 KEGG: dvm:DvMF_0772 tol-pal system protein YbgF; hypothetical protein 1053883 8418709 Dret_0889 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197758.1 1053098 D 485915 CDS YP_003197759.1 258405017 8418710 1053870..1055057 1 NC_013223.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dde:Dde_1581 DNA processing protein DprA, putative; DNA protecting protein DprA 1055057 8418710 Dret_0890 Desulfohalobium retbaense DSM 5692 DNA protecting protein DprA YP_003197759.1 1053870 D 485915 CDS YP_003197760.1 258405018 8418711 1055153..1056073 1 NC_013223.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dma:DMR_34030 tyrosine recombinase XerC; integrase family protein 1056073 8418711 Dret_0891 Desulfohalobium retbaense DSM 5692 integrase family protein YP_003197760.1 1055153 D 485915 CDS YP_003197761.1 258405019 8418712 complement(1056191..1057312) 1 NC_013223.1 KEGG: dvm:DvMF_1921 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; HhH-GPD family protein; helix-hairpin-helix motif; iron-sulfur cluster loop; SMART: HhH-GPD family protein; iron-sulfur cluster loop; A/G-specific adenine glycosylase 1057312 8418712 Dret_0892 Desulfohalobium retbaense DSM 5692 A/G-specific adenine glycosylase YP_003197761.1 1056191 R 485915 CDS YP_003197762.1 258405020 8418713 complement(1057398..1059080) 1 NC_013223.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1059080 8418713 Dret_0893 Desulfohalobium retbaense DSM 5692 putative ABC transporter ATP-binding protein YP_003197762.1 1057398 R 485915 CDS YP_003197763.1 258405021 8418714 1059625..1060446 1 NC_013223.1 KEGG: dvm:DvMF_0164 hypothetical protein; hypothetical protein 1060446 8418714 Dret_0894 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197763.1 1059625 D 485915 CDS YP_003197764.1 258405022 8418715 1060508..1062643 1 NC_013223.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: dvm:DvMF_0166 formate dehydrogenase; nitrate reductase 1062643 8418715 Dret_0895 Desulfohalobium retbaense DSM 5692 nitrate reductase YP_003197764.1 1060508 D 485915 CDS YP_003197765.1 258405023 8418716 1062732..1063286 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_0165 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1063286 8418716 Dret_0896 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003197765.1 1062732 D 485915 CDS YP_003197766.1 258405024 8418717 complement(1063432..1063611) 1 NC_013223.1 hypothetical protein 1063611 8418717 Dret_0897 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197766.1 1063432 R 485915 CDS YP_003197767.1 258405025 8418718 complement(1063726..1065039) 1 NC_013223.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: dma:DMR_28930 UmuC protein; DNA-directed DNA polymerase 1065039 8418718 Dret_0898 Desulfohalobium retbaense DSM 5692 DNA-directed DNA polymerase YP_003197767.1 1063726 R 485915 CDS YP_003197768.1 258405026 8418719 complement(1065051..1065497) 1 NC_013223.1 PFAM: Peptidase S24, S26A and S26B, conserved region; KEGG: dvl:Dvul_0458 putative prophage repressor; Peptidase S24, S26A and S26B, conserved region 1065497 8418719 Dret_0899 Desulfohalobium retbaense DSM 5692 Peptidase S24, S26A and S26B, conserved region YP_003197768.1 1065051 R 485915 CDS YP_003197769.1 258405027 8418720 1065676..1067517 1 NC_013223.1 PFAM: glycoside hydrolase 15-related; KEGG: noc:Noc_1617 glycoside hydrolase; glycoside hydrolase 15-related 1067517 8418720 Dret_0900 Desulfohalobium retbaense DSM 5692 glycoside hydrolase 15-related YP_003197769.1 1065676 D 485915 CDS YP_003197770.1 258405028 8418721 1067836..1068018 1 NC_013223.1 KEGG: sfu:Sfum_1387 hypothetical protein; hypothetical protein 1068018 8418721 Dret_0901 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197770.1 1067836 D 485915 CDS YP_003197771.1 258405029 8418722 complement(1068053..1069471) 1 NC_013223.1 KEGG: pfl:PFL_2863 signaling repeat/GGDEF domain/EAL domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase/phosphodiesterase 1069471 8418722 Dret_0902 Desulfohalobium retbaense DSM 5692 diguanylate cyclase/phosphodiesterase YP_003197771.1 1068053 R 485915 CDS YP_003197772.1 258405030 8418723 complement(1069723..1070619) 1 NC_013223.1 PFAM: zinc/iron permease; KEGG: dal:Dalk_3018 zinc transporter ZupT; zinc transporter ZupT 1070619 8418723 Dret_0903 Desulfohalobium retbaense DSM 5692 zinc transporter ZupT YP_003197772.1 1069723 R 485915 CDS YP_003197773.1 258405031 8418724 1070963..1072204 1 NC_013223.1 PFAM: sodium/hydrogen exchanger; KEGG: slo:Shew_3217 sodium/hydrogen exchanger; sodium/hydrogen exchanger 1072204 8418724 Dret_0904 Desulfohalobium retbaense DSM 5692 sodium/hydrogen exchanger YP_003197773.1 1070963 D 485915 CDS YP_003197774.1 258405032 8418725 1072405..1073256 1 NC_013223.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dol:Dole_2763 substrate-binding region of ABC- type glycine betaine transport system; glycine/betaine ABC transporter substrate-binding protein 1073256 8418725 Dret_0905 Desulfohalobium retbaense DSM 5692 glycine/betaine ABC transporter substrate-binding protein YP_003197774.1 1072405 D 485915 CDS YP_003197775.1 258405033 8418726 1073783..1075948 1 NC_013223.1 KEGG: nmu:Nmul_A1401 glycogen debranching protein GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 1075948 8418726 Dret_0906 Desulfohalobium retbaense DSM 5692 glycogen debranching protein GlgX YP_003197775.1 1073783 D 485915 CDS YP_003197776.1 258405034 8418727 1076441..1077625 1 NC_013223.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: dvu:DVU0442 PhoH-related protein; PhoH family protein 1077625 8418727 Dret_0907 Desulfohalobium retbaense DSM 5692 PhoH family protein YP_003197776.1 1076441 D 485915 CDS YP_003197777.1 258405035 8418728 1078622..1079035 1 NC_013223.1 PFAM: ROSMUCR transcriptional regulator; KEGG: dde:Dde_0303 MucR family transcriptional regulator; MucR family transcriptional regulator 1079035 8418728 Dret_0908 Desulfohalobium retbaense DSM 5692 MucR family transcriptional regulator YP_003197777.1 1078622 D 485915 CDS YP_003197778.1 258405036 8418729 1079185..1079598 1 NC_013223.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: vha:VIBHAR_02199 hypothetical protein; cupin 2 barrel domain-containing protein 1079598 8418729 Dret_0909 Desulfohalobium retbaense DSM 5692 cupin 2 barrel domain-containing protein YP_003197778.1 1079185 D 485915 CDS YP_003197779.1 258405037 8418730 1080343..1081080 1 NC_013223.1 PFAM: regulatory protein IclR; KEGG: atc:AGR_L_119 hypothetical protein; transcriptional regulator, IclR family 1081080 8418730 Dret_0910 Desulfohalobium retbaense DSM 5692 transcriptional regulator, IclR family YP_003197779.1 1080343 D 485915 CDS YP_003197780.1 258405038 8418731 1081166..1082695 1 NC_013223.1 TIGRFAM: choline-sulfatase; PFAM: sulfatase; KEGG: bmj:BMULJ_04947 choline-sulfatase; choline-sulfatase 1082695 8418731 Dret_0911 Desulfohalobium retbaense DSM 5692 choline-sulfatase YP_003197780.1 1081166 D 485915 CDS YP_003197781.1 258405039 8418732 1082750..1083853 1 NC_013223.1 PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_2157 radical SAM domain protein; radical SAM protein 1083853 8418732 Dret_0912 Desulfohalobium retbaense DSM 5692 radical SAM protein YP_003197781.1 1082750 D 485915 CDS YP_003197782.1 258405040 8418733 1084027..1085478 1 NC_013223.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; HI0933 family protein; KEGG: sfr:Sfri_0511 flavocytochrome c; flavocytochrome c 1085478 8418733 Dret_0913 Desulfohalobium retbaense DSM 5692 flavocytochrome c YP_003197782.1 1084027 D 485915 CDS YP_003197783.1 258405041 8418734 complement(1085504..1086028) 1 NC_013223.1 TIGRFAM: TonB family protein; KEGG: dvl:Dvul_0505 TonB family protein; TonB family protein 1086028 8418734 Dret_0914 Desulfohalobium retbaense DSM 5692 TonB family protein YP_003197783.1 1085504 R 485915 CDS YP_003197784.1 258405042 8418735 complement(1086032..1086454) 1 NC_013223.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dvl:Dvul_0506 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1086454 8418735 Dret_0915 Desulfohalobium retbaense DSM 5692 biopolymer transport protein ExbD/TolR YP_003197784.1 1086032 R 485915 CDS YP_003197785.1 258405043 8418736 complement(1086451..1087053) 1 NC_013223.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dvl:Dvul_0507 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1087053 8418736 Dret_0916 Desulfohalobium retbaense DSM 5692 MotA/TolQ/ExbB proton channel YP_003197785.1 1086451 R 485915 CDS YP_003197786.1 258405044 8418737 complement(1087148..1088992) 1 NC_013223.1 PFAM: cobalamin synthesis protein P47K; KEGG: sfu:Sfum_3612 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K 1088992 8418737 Dret_0917 Desulfohalobium retbaense DSM 5692 cobalamin synthesis protein P47K YP_003197786.1 1087148 R 485915 CDS YP_003197787.1 258405045 8418738 complement(1089222..1090376) 1 NC_013223.1 KEGG: sfu:Sfum_3609 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 1090376 8418738 Dret_0918 Desulfohalobium retbaense DSM 5692 metallo-beta-lactamase family protein YP_003197787.1 1089222 R 485915 CDS YP_003197788.1 258405046 8418739 complement(1090397..1091815) 1 NC_013223.1 KEGG: sfu:Sfum_3608 hypothetical protein; hypothetical protein 1091815 8418739 Dret_0919 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197788.1 1090397 R 485915 CDS YP_003197789.1 258405047 8418740 complement(1091912..1092166) 1 NC_013223.1 hypothetical protein 1092166 8418740 Dret_0920 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197789.1 1091912 R 485915 CDS YP_003197790.1 258405048 8418741 complement(1092163..1092927) 1 NC_013223.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dvl:Dvul_0512 regulatory protein GntR, HTH; GntR family transcriptional regulator 1092927 8418741 Dret_0921 Desulfohalobium retbaense DSM 5692 GntR family transcriptional regulator YP_003197790.1 1092163 R 485915 CDS YP_003197791.1 258405049 8418742 complement(1093262..1094566) 1 NC_013223.1 KEGG: dde:Dde_1612 hypothetical protein; hypothetical protein 1094566 8418742 Dret_0922 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197791.1 1093262 R 485915 CDS YP_003197792.1 258405050 8418743 complement(1094910..1095740) 1 NC_013223.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: plu:plu2765 hypothetical protein; hypothetical protein 1095740 8418743 Dret_0923 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197792.1 1094910 R 485915 CDS YP_003197793.1 258405051 8418744 1096169..1096519 1 NC_013223.1 hypothetical protein 1096519 8418744 Dret_0924 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197793.1 1096169 D 485915 CDS YP_003197794.1 258405052 8418745 1096551..1096754 1 NC_013223.1 KEGG: pin:Ping_3147 hypothetical protein; hypothetical protein 1096754 8418745 Dret_0925 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197794.1 1096551 D 485915 CDS YP_003197795.1 258405053 8418746 1096765..1097064 1 NC_013223.1 hypothetical protein 1097064 8418746 Dret_0926 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197795.1 1096765 D 485915 CDS YP_003197796.1 258405054 8418747 1097508..1097849 1 NC_013223.1 KEGG: dma:DMR_41530 putative transposase orf1 for insertion sequence element; putative transposase orf1 for insertion sequence element 1097849 8418747 Dret_0927 Desulfohalobium retbaense DSM 5692 putative transposase orf1 for insertion sequence element YP_003197796.1 1097508 D 485915 CDS YP_003197797.1 258405055 8418748 1097846..1098199 1 NC_013223.1 PFAM: IS66 Orf2 family protein; KEGG: dat:HRM2_43710 transposase; IS66 Orf2 family protein 1098199 8418748 Dret_0928 Desulfohalobium retbaense DSM 5692 IS66 Orf2 family protein YP_003197797.1 1097846 D 485915 CDS YP_003197798.1 258405056 8418749 1098249..1099799 1 NC_013223.1 PFAM: transposase IS66; KEGG: dma:DMR_41410 putative transposase orf3 for insertion sequence element; transposase IS66 1099799 8418749 Dret_0929 Desulfohalobium retbaense DSM 5692 transposase IS66 YP_003197798.1 1098249 D 485915 CDS YP_003197799.1 258405057 8418750 complement(1100795..1103005) 1 NC_013223.1 KEGG: dal:Dalk_0107 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS/PAC sensor hybrid histidine kinase 1103005 8418750 Dret_0930 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor hybrid histidine kinase YP_003197799.1 1100795 R 485915 CDS YP_003197800.1 258405058 8418751 complement(1103056..1103541) 1 NC_013223.1 KEGG: dol:Dole_1521 hypothetical protein; hypothetical protein 1103541 8418751 Dret_0931 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197800.1 1103056 R 485915 CDS YP_003197801.1 258405059 8418752 complement(1103610..1104107) 1 NC_013223.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: sat:SYN_00975 chemotaxis protein; CheW protein 1104107 8418752 Dret_0932 Desulfohalobium retbaense DSM 5692 CheW protein YP_003197801.1 1103610 R 485915 CDS YP_003197802.1 258405060 8418753 complement(1104222..1106564) 1 NC_013223.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_0574 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1106564 8418753 Dret_0933 Desulfohalobium retbaense DSM 5692 methyl-accepting chemotaxis sensory transducer YP_003197802.1 1104222 R 485915 CDS YP_003197803.1 258405061 8418754 complement(1107118..1108503) 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dol:Dole_3262 two component, sigma54 specific, Fis family transcriptional regulator; putative two component, sigma54 specific, transcriptional regulator, Fis family 1108503 8418754 Dret_0934 Desulfohalobium retbaense DSM 5692 putative two component, sigma54 specific, transcriptional regulator, Fis family YP_003197803.1 1107118 R 485915 CDS YP_003197804.1 258405062 8418755 1108868..1110100 1 NC_013223.1 PFAM: histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_0300 putative sensor with HAMP domain; putative sensor 1110100 8418755 Dret_0935 Desulfohalobium retbaense DSM 5692 putative sensor YP_003197804.1 1108868 D 485915 CDS YP_003197805.1 258405063 8418756 1110149..1112560 1 NC_013223.1 KEGG: dat:HRM2_15700 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 1112560 8418756 Dret_0936 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor hybrid histidine kinase YP_003197805.1 1110149 D 485915 CDS YP_003197806.1 258405064 8418760 1114195..1114662 1 NC_013223.1 KEGG: aav:Aave_3971 hypothetical protein; hypothetical protein 1114662 8418760 Dret_0940 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197806.1 1114195 D 485915 CDS YP_003197807.1 258405065 8418761 1114742..1114948 1 NC_013223.1 hypothetical protein 1114948 8418761 Dret_0941 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197807.1 1114742 D 485915 CDS YP_003197808.1 258405066 8418762 complement(1114987..1115835) 1 NC_013223.1 PFAM: GntR domain protein; KEGG: dat:HRM2_28260 hypothetical protein; GntR family transcriptional regulator 1115835 8418762 Dret_0942 Desulfohalobium retbaense DSM 5692 GntR family transcriptional regulator YP_003197808.1 1114987 R 485915 CDS YP_003197809.1 258405067 8418763 1116226..1116450 1 NC_013223.1 hypothetical protein 1116450 8418763 Dret_0943 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197809.1 1116226 D 485915 CDS YP_003197810.1 258405068 8418764 1116488..1117654 1 NC_013223.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: dat:HRM2_08540 transporter Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 1117654 8418764 Dret_0944 Desulfohalobium retbaense DSM 5692 Bcr/CflA subfamily drug resistance transporter YP_003197810.1 1116488 D 485915 CDS YP_003197811.1 258405069 8418765 1118363..1119163 1 NC_013223.1 hypothetical protein 1119163 8418765 Dret_0945 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197811.1 1118363 D 485915 CDS YP_003197812.1 258405070 8418766 complement(1119359..1120582) 1 NC_013223.1 PFAM: glucose sorbosone dehydrogenase; KEGG: dat:HRM2_43850 glucose/sorbosone dehydrogenase; glucose sorbosone dehydrogenase 1120582 8418766 Dret_0946 Desulfohalobium retbaense DSM 5692 glucose sorbosone dehydrogenase YP_003197812.1 1119359 R 485915 CDS YP_003197813.1 258405071 8418767 complement(1120964..1121545) 1 NC_013223.1 KEGG: sat:SYN_02350 hypothetical protein; hypothetical protein 1121545 8418767 Dret_0947 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197813.1 1120964 R 485915 CDS YP_003197814.1 258405072 8418768 complement(1121608..1123080) 1 NC_013223.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: dol:Dole_0431 bilirubin oxidase; multicopper oxidase type 3 1123080 8418768 Dret_0948 Desulfohalobium retbaense DSM 5692 multicopper oxidase type 3 YP_003197814.1 1121608 R 485915 CDS YP_003197815.1 258405073 8418769 complement(1123535..1124266) 1 NC_013223.1 KEGG: bja:bll2566 hypothetical protein; hypothetical protein 1124266 8418769 Dret_0949 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197815.1 1123535 R 485915 CDS YP_003197816.1 258405074 8418770 complement(1124285..1124746) 1 NC_013223.1 KEGG: ank:AnaeK_1209 hypothetical protein; hypothetical protein 1124746 8418770 Dret_0950 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197816.1 1124285 R 485915 CDS YP_003197817.1 258405075 8418771 complement(1124918..1125397) 1 NC_013223.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: afr:AFE_2509 transcriptional regulator, MerR family; transcriptional regulator, MerR family 1125397 8418771 Dret_0951 Desulfohalobium retbaense DSM 5692 transcriptional regulator, MerR family YP_003197817.1 1124918 R 485915 CDS YP_003197818.1 258405076 8418772 1125631..1126944 1 NC_013223.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gur:Gura_3588 radical SAM domain-containing protein; radical SAM protein 1126944 8418772 Dret_0952 Desulfohalobium retbaense DSM 5692 radical SAM protein YP_003197818.1 1125631 D 485915 CDS YP_003197819.1 258405077 8418773 1127092..1127889 1 NC_013223.1 in Rhodopseudomonas palustris this protein confers resistance to arsenite; catalyzes the formation of a number of methylated intermediates from arsenite and SAM producing trimethylarsine; arsenite S-adenosylmethyltransferase 1127889 arsM 8418773 arsM Desulfohalobium retbaense DSM 5692 arsenite S-adenosylmethyltransferase YP_003197819.1 1127092 D 485915 CDS YP_003197820.1 258405078 8418774 complement(1128018..1129418) 1 NC_013223.1 KEGG: dat:HRM2_19930 hypothetical protein; hypothetical protein 1129418 8418774 Dret_0954 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197820.1 1128018 R 485915 CDS YP_003197821.1 258405079 8418775 complement(1129878..1130297) 1 NC_013223.1 hypothetical protein 1130297 8418775 Dret_0955 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197821.1 1129878 R 485915 CDS YP_003197822.1 258405080 8418776 complement(1130294..1130836) 1 NC_013223.1 KEGG: bur:Bcep18194_B0172 hypothetical protein; hypothetical protein 1130836 8418776 Dret_0956 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197822.1 1130294 R 485915 CDS YP_003197823.1 258405081 8418777 complement(1130854..1131258) 1 NC_013223.1 KEGG: fph:Fphi_1301 hypothetical protein; hypothetical protein 1131258 8418777 Dret_0957 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197823.1 1130854 R 485915 CDS YP_003197824.1 258405082 8418778 complement(1132174..1132815) 1 NC_013223.1 PFAM: protein of unknown function DUF1121; KEGG: dde:Dde_2335 hypothetical protein; hypothetical protein 1132815 8418778 Dret_0958 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197824.1 1132174 R 485915 CDS YP_003197825.1 258405083 8418779 complement(1132805..1133080) 1 NC_013223.1 KEGG: dds:Ddes_0329 transcriptional regulator, XRE family; hypothetical protein 1133080 8418779 Dret_0959 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197825.1 1132805 R 485915 CDS YP_003197826.1 258405084 8418780 1133181..1133510 1 NC_013223.1 hypothetical protein 1133510 8418780 Dret_0960 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197826.1 1133181 D 485915 CDS YP_003197827.1 258405085 8418781 1133965..1134963 1 NC_013223.1 KEGG: ajs:Ajs_3614 phage integrase family protein; hypothetical protein 1134963 8418781 Dret_0961 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197827.1 1133965 D 485915 CDS YP_003197828.1 258405086 8418782 1135314..1136429 1 NC_013223.1 PFAM: integrase family protein; KEGG: dma:DMR_36050 phage integrase family protein; integrase family protein 1136429 8418782 Dret_0962 Desulfohalobium retbaense DSM 5692 integrase family protein YP_003197828.1 1135314 D 485915 CDS YP_003197829.1 258405087 8418783 complement(1136414..1137814) 1 NC_013223.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: sfu:Sfum_3200 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 1137814 8418783 Dret_0963 Desulfohalobium retbaense DSM 5692 RNA-directed DNA polymerase YP_003197829.1 1136414 R 485915 CDS YP_003197830.1 258405088 8418784 complement(1137877..1138059) 1 NC_013223.1 hypothetical protein 1138059 8418784 Dret_0964 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197830.1 1137877 R 485915 CDS YP_003197831.1 258405089 8418787 complement(1138547..1139827) 1 NC_013223.1 KEGG: dvl:Dvul_2740 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl- tRNA synthetase, class IIa-like; seryl-tRNA synthetase 1139827 8418787 Dret_0965 Desulfohalobium retbaense DSM 5692 seryl-tRNA synthetase YP_003197831.1 1138547 R 485915 CDS YP_003197832.1 258405090 8418788 complement(1140122..1141603) 1 NC_013223.1 PFAM: Uncharacterised protein family UPF0324; KEGG: noc:Noc_1683 hypothetical protein; hypothetical protein 1141603 8418788 Dret_0966 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197832.1 1140122 R 485915 CDS YP_003197833.1 258405091 8418789 complement(1141625..1141870) 1 NC_013223.1 KEGG: nmu:Nmul_A2602 hypothetical protein; hypothetical protein 1141870 8418789 Dret_0967 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197833.1 1141625 R 485915 CDS YP_003197834.1 258405092 8418790 complement(1141884..1142060) 1 NC_013223.1 hypothetical protein 1142060 8418790 Dret_0968 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197834.1 1141884 R 485915 CDS YP_003197835.1 258405093 8418791 1142330..1144735 1 NC_013223.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase; histidine kinase 1144735 8418791 Dret_0969 Desulfohalobium retbaense DSM 5692 histidine kinase YP_003197835.1 1142330 D 485915 CDS YP_003197836.1 258405094 8418792 1144970..1146391 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dvu:DVU0539 sigma-54 dependent DNA-binding response regulator; two component, sigma54 specific, transcriptional regulator, Fis family 1146391 8418792 Dret_0970 Desulfohalobium retbaense DSM 5692 two component, sigma54 specific, transcriptional regulator, Fis family YP_003197836.1 1144970 D 485915 CDS YP_003197837.1 258405095 8418793 1146406..1146888 1 NC_013223.1 PFAM: CinA domain protein; KEGG: hypothetical protein; CinA domain-containing protein 1146888 8418793 Dret_0971 Desulfohalobium retbaense DSM 5692 CinA domain-containing protein YP_003197837.1 1146406 D 485915 CDS YP_003197838.1 258405096 8418794 1147054..1147791 1 NC_013223.1 hypothetical protein 1147791 8418794 Dret_0972 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197838.1 1147054 D 485915 CDS YP_003197839.1 258405097 8418795 1147873..1148457 1 NC_013223.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: dma:DMR_39270 2'-5' RNA ligase; 2'-5' RNA ligase 1148457 8418795 Dret_0973 Desulfohalobium retbaense DSM 5692 2'-5' RNA ligase YP_003197839.1 1147873 D 485915 CDS YP_003197840.1 258405098 8418796 complement(1149103..1149804) 1 NC_013223.1 PFAM: protein of unknown function DUF1614; KEGG: sfu:Sfum_0878 protein of unknown function DUF1614; hypothetical protein 1149804 8418796 Dret_0974 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197840.1 1149103 R 485915 CDS YP_003197841.1 258405099 8418797 1149933..1151690 1 NC_013223.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: dma:DMR_20910 putative ABC transporter; ABC transporter 1151690 8418797 Dret_0975 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003197841.1 1149933 D 485915 CDS YP_003197842.1 258405100 8418798 1151918..1152154 1 NC_013223.1 KEGG: dvm:DvMF_2255 hypothetical protein; hypothetical protein 1152154 8418798 Dret_0976 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197842.1 1151918 D 485915 CDS YP_003197843.1 258405101 8418799 complement(1152234..1153244) 1 NC_013223.1 PFAM: glycosyl transferase family 9; KEGG: dvu:DVU1956 heptosyltransferase family protein; glycosyl transferase family protein 1153244 8418799 Dret_0977 Desulfohalobium retbaense DSM 5692 glycosyl transferase family protein YP_003197843.1 1152234 R 485915 CDS YP_003197844.1 258405102 8418800 complement(1153241..1154377) 1 NC_013223.1 PFAM: glycosyl transferase group 1; KEGG: gur:Gura_3800 glycosyl transferase, group 1; group 1 glycosyl transferase 1154377 8418800 Dret_0978 Desulfohalobium retbaense DSM 5692 group 1 glycosyl transferase YP_003197844.1 1153241 R 485915 CDS YP_003197845.1 258405103 8418801 complement(1154517..1155212) 1 NC_013223.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: dvm:DvMF_3135 histidinol-phosphate phosphatase family protein; histidinol-phosphate phosphatase family protein 1155212 8418801 Dret_0979 Desulfohalobium retbaense DSM 5692 histidinol-phosphate phosphatase family protein YP_003197845.1 1154517 R 485915 CDS YP_003197846.1 258405104 8418802 1155390..1156439 1 NC_013223.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; KEGG: dma:DMR_22520 hypothetical protein; hypothetical protein 1156439 8418802 Dret_0980 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197846.1 1155390 D 485915 CDS YP_003197847.1 258405105 8418803 1156473..1156889 1 NC_013223.1 KEGG: dde:Dde_1478 cytochrome c-type biogenesis protein CcmE; cytochrome c-type biogenesis protein CcmE 1156889 8418803 Dret_0981 Desulfohalobium retbaense DSM 5692 cytochrome c-type biogenesis protein CcmE YP_003197847.1 1156473 D 485915 CDS YP_003197848.1 258405106 8418804 1157154..1159055 1 NC_013223.1 PFAM: cytochrome c assembly protein; KEGG: dma:DMR_22500 cytochrome c-type biogenesis protein CcmF; cytochrome c assembly protein 1159055 8418804 Dret_0982 Desulfohalobium retbaense DSM 5692 cytochrome c assembly protein YP_003197848.1 1157154 D 485915 CDS YP_003197849.1 258405107 8418805 1159052..1159714 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1476 ATPase; ABC transporter 1159714 8418805 Dret_0983 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003197849.1 1159052 D 485915 CDS YP_003197850.1 258405108 8418806 1159707..1160381 1 NC_013223.1 PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dvm:DvMF_3130 cytochrome c-type biogenesis protein CcmB; cytochrome c-type biogenesis protein CcmB 1160381 8418806 Dret_0984 Desulfohalobium retbaense DSM 5692 cytochrome c-type biogenesis protein CcmB YP_003197850.1 1159707 D 485915 CDS YP_003197851.1 258405109 8418807 1160408..1161112 1 NC_013223.1 PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1474 cytochrome c-type biogenesis protein CcmC; cytochrome c assembly protein 1161112 8418807 Dret_0985 Desulfohalobium retbaense DSM 5692 cytochrome c assembly protein YP_003197851.1 1160408 D 485915 CDS YP_003197852.1 258405110 8418808 1161290..1161442 1 NC_013223.1 hypothetical protein 1161442 8418808 Dret_0986 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197852.1 1161290 D 485915 CDS YP_003197853.1 258405111 8418809 1161432..1161995 1 NC_013223.1 PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: dde:Dde_1473 TPR repeat-containing protein; hypothetical protein 1161995 8418809 Dret_0987 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197853.1 1161432 D 485915 CDS YP_003197854.1 258405112 8418810 1162006..1163463 1 NC_013223.1 KEGG: dma:DMR_22400 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; SMART: CBS domain containing protein; inosine-5'-monophosphate dehydrogenase 1163463 8418810 Dret_0988 Desulfohalobium retbaense DSM 5692 inosine-5'-monophosphate dehydrogenase YP_003197854.1 1162006 D 485915 CDS YP_003197855.1 258405113 8418811 1163563..1165110 1 NC_013223.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1165110 guaA 8418811 guaA Desulfohalobium retbaense DSM 5692 GMP synthase YP_003197855.1 1163563 D 485915 CDS YP_003197856.1 258405114 8418812 1165451..1165873 1 NC_013223.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dma:DMR_22380 sec-independent protein translocase protein TatB; twin-arginine translocation protein subunit TatB 1165873 8418812 Dret_0990 Desulfohalobium retbaense DSM 5692 twin-arginine translocation protein subunit TatB YP_003197856.1 1165451 D 485915 CDS YP_003197857.1 258405115 8418813 1165870..1166844 1 NC_013223.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: dvm:DvMF_3123 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC 1166844 8418813 Dret_0991 Desulfohalobium retbaense DSM 5692 Sec-independent protein translocase subunit TatC YP_003197857.1 1165870 D 485915 CDS YP_003197858.1 258405116 8418814 1166825..1167406 1 NC_013223.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: dma:DMR_22370 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 1167406 8418814 Dret_0992 Desulfohalobium retbaense DSM 5692 imidazoleglycerol-phosphate dehydratase YP_003197858.1 1166825 D 485915 CDS YP_003197859.1 258405117 8418815 1167418..1168053 1 NC_013223.1 KEGG: dde:Dde_1466 putative lipoprotein; putative lipoprotein 1168053 8418815 Dret_0993 Desulfohalobium retbaense DSM 5692 putative lipoprotein YP_003197859.1 1167418 D 485915 CDS YP_003197860.1 258405118 8418816 1168050..1168781 1 NC_013223.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1168781 8418816 Dret_0994 Desulfohalobium retbaense DSM 5692 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_003197860.1 1168050 D 485915 CDS YP_003197861.1 258405119 8418817 1168890..1169087 1 NC_013223.1 PFAM: Heavy metal transport/detoxification protein; KEGG: sfu:Sfum_3224 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 1169087 8418817 Dret_0995 Desulfohalobium retbaense DSM 5692 heavy metal transport/detoxification protein YP_003197861.1 1168890 D 485915 CDS YP_003197862.1 258405120 8418818 complement(1169307..1170542) 1 NC_013223.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: dat:HRM2_05320 UraA; uracil-xanthine permease 1170542 8418818 Dret_0996 Desulfohalobium retbaense DSM 5692 uracil-xanthine permease YP_003197862.1 1169307 R 485915 CDS YP_003197863.1 258405121 8418819 complement(1170664..1171290) 1 NC_013223.1 TIGRFAM: uracil phosphoribosyltransferase; KEGG: dat:HRM2_05330 Upp; uracil phosphoribosyltransferase 1171290 8418819 Dret_0997 Desulfohalobium retbaense DSM 5692 uracil phosphoribosyltransferase YP_003197863.1 1170664 R 485915 CDS YP_003197864.1 258405122 8418820 1171384..1173027 1 NC_013223.1 TIGRFAM: pseudouridine synthase, RluA family; dephospho-CoA kinase; PFAM: pseudouridine synthase; Dephospho-CoA kinase; RNA-binding S4 domain protein; KEGG: dma:DMR_23610 ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase; RluA family pseudouridine synthase 1173027 8418820 Dret_0998 Desulfohalobium retbaense DSM 5692 RluA family pseudouridine synthase YP_003197864.1 1171384 D 485915 CDS YP_003197865.1 258405123 8418821 1173270..1174013 1 NC_013223.1 PFAM: Rhomboid family protein; KEGG: dvm:DvMF_0913 rhomboid family protein; rhomboid family protein 1174013 8418821 Dret_0999 Desulfohalobium retbaense DSM 5692 rhomboid family protein YP_003197865.1 1173270 D 485915 CDS YP_003197866.1 258405124 8418822 1174184..1174942 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvm:DvMF_0914 ABC transporter related; ABC transporter 1174942 8418822 Dret_1000 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003197866.1 1174184 D 485915 CDS YP_003197867.1 258405125 8418823 1174962..1176134 1 NC_013223.1 PFAM: SufBD protein; KEGG: dma:DMR_23420 SufBD family protein; SufBD protein 1176134 8418823 Dret_1001 Desulfohalobium retbaense DSM 5692 SufBD protein YP_003197867.1 1174962 D 485915 CDS YP_003197868.1 258405126 8418824 1176444..1177670 1 NC_013223.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1177670 8418824 Dret_1002 Desulfohalobium retbaense DSM 5692 transposase IS204/IS1001/IS1096/IS1165 family protein YP_003197868.1 1176444 D 485915 CDS YP_003197869.1 258405127 8418825 complement(1177839..1178732) 1 NC_013223.1 PFAM: Integrase catalytic region; KEGG: dma:DMR_40700 putative transposase orfB; integrase catalytic subunit 1178732 8418825 Dret_1003 Desulfohalobium retbaense DSM 5692 integrase catalytic subunit YP_003197869.1 1177839 R 485915 CDS YP_003197870.1 258405128 8418826 complement(1178729..1179112) 1 NC_013223.1 KEGG: dma:DMR_36590 putative transposase; hypothetical protein 1179112 8418826 Dret_1004 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197870.1 1178729 R 485915 CDS YP_003197871.1 258405129 8418827 1179205..1179654 1 NC_013223.1 KEGG: dvm:DvMF_3045 hypothetical protein; hypothetical protein 1179654 8418827 Dret_1005 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197871.1 1179205 D 485915 CDS YP_003197872.1 258405130 8418828 complement(1179686..1180156) 1 NC_013223.1 PFAM: protein of unknown function UPF0153; KEGG: dds:Ddes_0986 protein of unknown function UPF0153; hypothetical protein 1180156 8418828 Dret_1006 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197872.1 1179686 R 485915 CDS YP_003197873.1 258405131 8418829 1180590..1181699 1 NC_013223.1 PFAM: Radical SAM domain protein; KEGG: dma:DMR_21460 hypothetical protein; radical SAM protein 1181699 8418829 Dret_1007 Desulfohalobium retbaense DSM 5692 radical SAM protein YP_003197873.1 1180590 D 485915 CDS YP_003197874.1 258405132 8418830 1181772..1182998 1 NC_013223.1 PFAM: peptidase M24; creatinase; KEGG: dvu:DVU1000 M24 family peptidase; peptidase M24 1182998 8418830 Dret_1008 Desulfohalobium retbaense DSM 5692 peptidase M24 YP_003197874.1 1181772 D 485915 CDS YP_003197875.1 258405133 8418832 1184079..1185788 1 NC_013223.1 PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; SMART: chemotaxis sensory transducer; KEGG: dat:HRM2_16990 McpA3; methyl-accepting chemotaxis sensory transducer with Cache sensor 1185788 8418832 Dret_1009 Desulfohalobium retbaense DSM 5692 methyl-accepting chemotaxis sensory transducer with Cache sensor YP_003197875.1 1184079 D 485915 CDS YP_003197876.1 258405134 8418833 complement(1185938..1188115) 1 NC_013223.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: dat:HRM2_42990 PpsA8; pyruvate phosphate dikinase PEP/pyruvate- binding protein 1188115 8418833 Dret_1010 Desulfohalobium retbaense DSM 5692 pyruvate phosphate dikinase PEP/pyruvate- binding protein YP_003197876.1 1185938 R 485915 CDS YP_003197877.1 258405135 8418834 1188766..1190676 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_0431 putative ATP-binding component of a transport system; ABC transporter 1190676 8418834 Dret_1011 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003197877.1 1188766 D 485915 CDS YP_003197878.1 258405136 8418835 1190680..1191528 1 NC_013223.1 KEGG: dvm:DvMF_2942 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase; pantoate/beta-alanine ligase 1191528 8418835 Dret_1012 Desulfohalobium retbaense DSM 5692 pantoate/beta-alanine ligase YP_003197878.1 1190680 D 485915 CDS YP_003197879.1 258405137 8418836 1191531..1191911 1 NC_013223.1 KEGG: tgr:Tgr7_0877 aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; aspartate 1-decarboxylase 1191911 8418836 Dret_1013 Desulfohalobium retbaense DSM 5692 aspartate 1-decarboxylase YP_003197879.1 1191531 D 485915 CDS YP_003197880.1 258405138 8418837 1191896..1192747 1 NC_013223.1 KEGG: dde:Dde_1500 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1192747 8418837 Dret_1014 Desulfohalobium retbaense DSM 5692 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_003197880.1 1191896 D 485915 CDS YP_003197881.1 258405139 8418838 complement(1193141..1193899) 1 NC_013223.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pca:Pcar_0791 putative DNA replication factor; IstB domain-containing protein ATP-binding protein 1193899 8418838 Dret_1015 Desulfohalobium retbaense DSM 5692 IstB domain-containing protein ATP-binding protein YP_003197881.1 1193141 R 485915 CDS YP_003197882.1 258405140 8418839 complement(1193896..1195395) 1 NC_013223.1 KEGG: dat:HRM2_39510 IstA2; IstA2 1195395 8418839 Dret_1016 Desulfohalobium retbaense DSM 5692 IstA2 YP_003197882.1 1193896 R 485915 CDS YP_003197883.1 258405141 8418840 1196154..1197641 1 NC_013223.1 hypothetical protein 1197641 8418840 Dret_1017 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197883.1 1196154 D 485915 CDS YP_003197884.1 258405142 8418841 1197807..1199780 1 NC_013223.1 KEGG: gbm:Gbem_2047 type IV pilus assembly PilZ; hypothetical protein 1199780 8418841 Dret_1018 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197884.1 1197807 D 485915 CDS YP_003197885.1 258405143 8418842 1199963..1201870 1 NC_013223.1 PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; SMART: metal-dependent phosphohydrolase HD region; GAF domain protein; KEGG: gbm:Gbem_2046 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1201870 8418842 Dret_1019 Desulfohalobium retbaense DSM 5692 metal dependent phosphohydrolase YP_003197885.1 1199963 D 485915 CDS YP_003197886.1 258405144 8418843 complement(1202103..1202924) 1 NC_013223.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ppd:Ppro_1409 methyltransferase type 12; type 11 methyltransferase 1202924 8418843 Dret_1020 Desulfohalobium retbaense DSM 5692 type 11 methyltransferase YP_003197886.1 1202103 R 485915 CDS YP_003197887.1 258405145 8418844 1203378..1204418 1 NC_013223.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: dma:DMR_32970 cation efflux family protein; cation diffusion facilitator family transporter 1204418 8418844 Dret_1021 Desulfohalobium retbaense DSM 5692 cation diffusion facilitator family transporter YP_003197887.1 1203378 D 485915 CDS YP_003197888.1 258405146 8418845 complement(1204599..1205660) 1 NC_013223.1 PFAM: Protein of unknown function DUF2219; KEGG: dvm:DvMF_0587 hypothetical protein; hypothetical protein 1205660 8418845 Dret_1022 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197888.1 1204599 R 485915 CDS YP_003197889.1 258405147 8418846 1205787..1206434 1 NC_013223.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dma:DMR_15950 putative hydrolase; HAD-superfamily hydrolase 1206434 8418846 Dret_1023 Desulfohalobium retbaense DSM 5692 HAD-superfamily hydrolase YP_003197889.1 1205787 D 485915 CDS YP_003197890.1 258405148 8418847 complement(1206553..1207377) 1 NC_013223.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: dma:DMR_00100 hypothetical protein; hypothetical protein 1207377 8418847 Dret_1024 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197890.1 1206553 R 485915 CDS YP_003197891.1 258405149 8418848 complement(1207370..1208731) 1 NC_013223.1 PFAM: protein of unknown function DUF107; KEGG: dma:DMR_00090 hypothetical membrane protein; hypothetical protein 1208731 8418848 Dret_1025 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197891.1 1207370 R 485915 CDS YP_003197892.1 258405150 8418849 1208964..1209143 1 NC_013223.1 hypothetical protein 1209143 8418849 Dret_1026 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197892.1 1208964 D 485915 CDS YP_003197893.1 258405151 8418850 complement(1209131..1209511) 1 NC_013223.1 PFAM: cytochrome c class III; KEGG: dvl:Dvul_2715 acidic cytochrome c3; cytochrome c class III 1209511 8418850 Dret_1027 Desulfohalobium retbaense DSM 5692 cytochrome c class III YP_003197893.1 1209131 R 485915 CDS YP_003197894.1 258405152 8418851 complement(1209531..1210886) 1 NC_013223.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2714 hypothetical protein; hypothetical protein 1210886 8418851 Dret_1028 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197894.1 1209531 R 485915 CDS YP_003197895.1 258405153 8418852 complement(1210910..1211569) 1 NC_013223.1 KEGG: dol:Dole_0303 hypothetical protein; hypothetical protein 1211569 8418852 Dret_1029 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197895.1 1210910 R 485915 CDS YP_003197896.1 258405154 8418853 complement(1211624..1212883) 1 NC_013223.1 KEGG: dol:Dole_0304 hypothetical protein; hypothetical protein 1212883 8418853 Dret_1030 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197896.1 1211624 R 485915 CDS YP_003197897.1 258405155 8418854 complement(1213128..1215281) 1 NC_013223.1 PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dat:HRM2_28330 HdrD3; hypothetical protein 1215281 8418854 Dret_1031 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197897.1 1213128 R 485915 CDS YP_003197898.1 258405156 8418855 complement(1215268..1215912) 1 NC_013223.1 PFAM: protein of unknown function DUF162; KEGG: dvl:Dvul_0341 hypothetical protein; hypothetical protein 1215912 8418855 Dret_1032 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197898.1 1215268 R 485915 CDS YP_003197899.1 258405157 8418856 complement(1216265..1217332) 1 NC_013223.1 PFAM: DRTGG domain protein; KEGG: dde:Dde_1705 cobyrinic acid a,c-diamide synthase family protein; DRTGG domain-containing protein 1217332 8418856 Dret_1033 Desulfohalobium retbaense DSM 5692 DRTGG domain-containing protein YP_003197899.1 1216265 R 485915 CDS YP_003197900.1 258405158 8418857 complement(1217503..1218711) 1 NC_013223.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: dvl:Dvul_0343 acetate kinase; acetate kinase 1218711 8418857 Dret_1034 Desulfohalobium retbaense DSM 5692 acetate kinase YP_003197900.1 1217503 R 485915 CDS YP_003197901.1 258405159 8418858 complement(1218708..1220816) 1 NC_013223.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 1220816 8418858 Dret_1035 Desulfohalobium retbaense DSM 5692 phosphate acetyltransferase YP_003197901.1 1218708 R 485915 CDS YP_003197902.1 258405160 8418859 complement(1220995..1224651) 1 NC_013223.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; pyruvate ferredoxin/flavodoxin oxidoreductase 1224651 8418859 Dret_1036 Desulfohalobium retbaense DSM 5692 pyruvate ferredoxin/flavodoxin oxidoreductase YP_003197902.1 1220995 R 485915 CDS YP_003197903.1 258405161 8418860 complement(1224904..1226202) 1 NC_013223.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_1863 protein of unknown function DUF224 cysteine-rich region domain protein; hypothetical protein 1226202 8418860 Dret_1037 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197903.1 1224904 R 485915 CDS YP_003197904.1 258405162 8418861 complement(1226205..1227590) 1 NC_013223.1 PFAM: FAD linked oxidase domain protein; KEGG: dde:Dde_3239 glycolate oxidase, subunit GlcD; FAD linked oxidase domain-containing protein 1227590 8418861 Dret_1038 Desulfohalobium retbaense DSM 5692 FAD linked oxidase domain-containing protein YP_003197904.1 1226205 R 485915 CDS YP_003197905.1 258405163 8418862 complement(1227771..1229477) 1 NC_013223.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dde:Dde_3238 L-lactate transport; L-lactate transport 1229477 8418862 Dret_1039 Desulfohalobium retbaense DSM 5692 L-lactate transport YP_003197905.1 1227771 R 485915 CDS YP_003197906.1 258405164 8418863 complement(1229891..1230361) 1 NC_013223.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dat:HRM2_38070 transcriptional regulator (MarR family protein); transcriptional regulator, MarR family 1230361 8418863 Dret_1040 Desulfohalobium retbaense DSM 5692 transcriptional regulator, MarR family YP_003197906.1 1229891 R 485915 CDS YP_003197907.1 258405165 8418864 complement(1230470..1231516) 1 NC_013223.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: gsu:GSU1399 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 1231516 8418864 Dret_1041 Desulfohalobium retbaense DSM 5692 magnesium and cobalt transport protein CorA YP_003197907.1 1230470 R 485915 CDS YP_003197908.1 258405166 8418865 complement(1231971..1232681) 1 NC_013223.1 PFAM: SNARE associated Golgi protein; KEGG: dal:Dalk_3002 SNARE associated Golgi protein; hypothetical protein 1232681 8418865 Dret_1042 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197908.1 1231971 R 485915 CDS YP_003197909.1 258405167 8418866 complement(1232824..1233342) 1 NC_013223.1 SMART: Water Stress and Hypersensitive response domain protein; KEGG: dal:Dalk_0831 water stress and hypersensitive response domain protein; Water Stress and Hypersensitive response domain-containing protein 1233342 8418866 Dret_1043 Desulfohalobium retbaense DSM 5692 Water Stress and Hypersensitive response domain-containing protein YP_003197909.1 1232824 R 485915 CDS YP_003197910.1 258405168 8418867 complement(1233687..1235411) 1 NC_013223.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: dat:HRM2_05150 Na / phosphate-cotransporter family protein; Na/Pi-cotransporter II-like protein 1235411 8418867 Dret_1044 Desulfohalobium retbaense DSM 5692 Na/Pi-cotransporter II-like protein YP_003197910.1 1233687 R 485915 CDS YP_003197911.1 258405169 8418869 complement(1236007..1236126) 1 NC_013223.1 hypothetical protein 1236126 8418869 Dret_1045 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197911.1 1236007 R 485915 CDS YP_003197912.1 258405170 8418870 1236227..1237567 1 NC_013223.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: abo:ABO_0256 7,8-diaminononanoate transaminase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1237567 8418870 Dret_1046 Desulfohalobium retbaense DSM 5692 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_003197912.1 1236227 D 485915 CDS YP_003197913.1 258405171 8418871 1237567..1238217 1 NC_013223.1 TIGRFAM: dethiobiotin synthase; KEGG: dol:Dole_0681 dethiobiotin synthase; dethiobiotin synthase 1238217 8418871 Dret_1047 Desulfohalobium retbaense DSM 5692 dethiobiotin synthase YP_003197913.1 1237567 D 485915 CDS YP_003197914.1 258405172 8418872 1238229..1239191 1 NC_013223.1 KEGG: dol:Dole_0682 biotin synthase; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 1239191 8418872 Dret_1048 Desulfohalobium retbaense DSM 5692 biotin synthase YP_003197914.1 1238229 D 485915 CDS YP_003197915.1 258405173 8418873 complement(1239237..1239995) 1 NC_013223.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dma:DMR_18950 putative biotin synthesis protein BioC; type 11 methyltransferase 1239995 8418873 Dret_1049 Desulfohalobium retbaense DSM 5692 type 11 methyltransferase YP_003197915.1 1239237 R 485915 CDS YP_003197916.1 258405174 8418874 complement(1239967..1240605) 1 NC_013223.1 KEGG: dma:DMR_18960 hypothetical protein; hypothetical protein 1240605 8418874 Dret_1050 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197916.1 1239967 R 485915 CDS YP_003197917.1 258405175 8418875 complement(1240602..1241798) 1 NC_013223.1 PFAM: aminotransferase class I and II; KEGG: dma:DMR_18980 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 1241798 8418875 Dret_1051 Desulfohalobium retbaense DSM 5692 8-amino-7-oxononanoate synthase YP_003197917.1 1240602 R 485915 CDS YP_003197918.1 258405176 8418877 1242228..1243091 1 NC_013223.1 PFAM: protein of unknown function DUF89; KEGG: dde:Dde_3221 hypothetical protein; hypothetical protein 1243091 8418877 Dret_1052 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197918.1 1242228 D 485915 CDS YP_003197919.1 258405177 8418878 1243395..1245743 1 NC_013223.1 PFAM: helicase domain protein; helicase-associated domain protein; SMART: helicase domain protein; DEAD-like helicase; KEGG: aeh:Mlg_1473 helicase domain-containing protein; helicase domain-containing protein 1245743 8418878 Dret_1053 Desulfohalobium retbaense DSM 5692 helicase domain-containing protein YP_003197919.1 1243395 D 485915 CDS YP_003197920.1 258405178 8418879 1245937..1246281 1 NC_013223.1 KEGG: dma:DMR_10450 hypothetical protein; hypothetical protein 1246281 8418879 Dret_1054 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197920.1 1245937 D 485915 CDS YP_003197921.1 258405179 8418880 1246362..1247924 1 NC_013223.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: dde:Dde_3305 choline/carnitine/betaine transport; choline/carnitine/betaine transporter 1247924 8418880 Dret_1055 Desulfohalobium retbaense DSM 5692 choline/carnitine/betaine transporter YP_003197921.1 1246362 D 485915 CDS YP_003197922.1 258405180 8418881 1247979..1248896 1 NC_013223.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_3306 glycine/betaine/L-proline ABC transporter, periplasmic-binding protein; glycine/betaine ABC transporter substrate-binding protein 1248896 8418881 Dret_1056 Desulfohalobium retbaense DSM 5692 glycine/betaine ABC transporter substrate-binding protein YP_003197922.1 1247979 D 485915 CDS YP_003197923.1 258405181 8418882 complement(1249128..1249670) 1 NC_013223.1 TIGRFAM: C_GCAxxG_C_C family protein; PFAM: C_GCAxxG_C_C family protein; KEGG: dma:DMR_15630 hypothetical protein; C_GCAxxG_C_C family protein 1249670 8418882 Dret_1057 Desulfohalobium retbaense DSM 5692 C_GCAxxG_C_C family protein YP_003197923.1 1249128 R 485915 CDS YP_003197924.1 258405182 8418883 complement(1249727..1250263) 1 NC_013223.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: dal:Dalk_4013 rhodanese domain protein; rhodanese domain-containing protein 1250263 8418883 Dret_1058 Desulfohalobium retbaense DSM 5692 rhodanese domain-containing protein YP_003197924.1 1249727 R 485915 CDS YP_003197925.1 258405183 8418884 complement(1250315..1250836) 1 NC_013223.1 PFAM: DoxX family protein; KEGG: dal:Dalk_4014 DoxX family protein; DoxX family protein 1250836 8418884 Dret_1059 Desulfohalobium retbaense DSM 5692 DoxX family protein YP_003197925.1 1250315 R 485915 CDS YP_003197926.1 258405184 8418885 complement(1251246..1251875) 1 NC_013223.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: amc:MADE_02071 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 1251875 8418885 Dret_1060 Desulfohalobium retbaense DSM 5692 lysine exporter protein LysE/YggA YP_003197926.1 1251246 R 485915 CDS YP_003197927.1 258405185 8418886 complement(1251866..1252645) 1 NC_013223.1 PFAM: protein of unknown function DUF152; KEGG: dvl:Dvul_2619 hypothetical protein; hypothetical protein 1252645 8418886 Dret_1061 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197927.1 1251866 R 485915 CDS YP_003197928.1 258405186 8418887 complement(1252714..1253319) 1 NC_013223.1 TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: dvl:Dvul_2618 5-formyltetrahydrofolate cyclo- ligase; 5-formyltetrahydrofolate cyclo-ligase 1253319 8418887 Dret_1062 Desulfohalobium retbaense DSM 5692 5-formyltetrahydrofolate cyclo-ligase YP_003197928.1 1252714 R 485915 CDS YP_003197929.1 258405187 8418888 1253455..1254135 1 NC_013223.1 PFAM: metallophosphoesterase; KEGG: dma:DMR_23200 hypothetical protein; metallophosphoesterase 1254135 8418888 Dret_1063 Desulfohalobium retbaense DSM 5692 metallophosphoesterase YP_003197929.1 1253455 D 485915 CDS YP_003197930.1 258405188 8418889 1254135..1254902 1 NC_013223.1 KEGG: dma:DMR_23180 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III 1254902 8418889 Dret_1064 Desulfohalobium retbaense DSM 5692 exodeoxyribonuclease III YP_003197930.1 1254135 D 485915 CDS YP_003197931.1 258405189 8418890 1255044..1255691 1 NC_013223.1 PFAM: Fumarate reductase respiratory complex; KEGG: dde:Dde_1258 fumarate reductase, cytochrome b subunit; Fumarate reductase respiratory complex 1255691 8418890 Dret_1065 Desulfohalobium retbaense DSM 5692 Fumarate reductase respiratory complex YP_003197931.1 1255044 D 485915 CDS YP_003197932.1 258405190 8418891 1256069..1257913 1 NC_013223.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 1257913 8418891 Dret_1066 Desulfohalobium retbaense DSM 5692 fumarate reductase flavoprotein subunit YP_003197932.1 1256069 D 485915 CDS YP_003197933.1 258405191 8418892 1258035..1258814 1 NC_013223.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 1258814 frdB 8418892 frdB Desulfohalobium retbaense DSM 5692 fumarate reductase iron-sulfur subunit YP_003197933.1 1258035 D 485915 CDS YP_003197934.1 258405192 8418893 1258795..1259637 1 NC_013223.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 1259637 8418893 Dret_1068 Desulfohalobium retbaense DSM 5692 fumarate hydratase YP_003197934.1 1258795 D 485915 CDS YP_003197935.1 258405193 8418894 1259634..1260188 1 NC_013223.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: dvl:Dvul_0124 tartrate/fumarate subfamily Fe- S type hydro-lyase beta subunit; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta 1260188 8418894 Dret_1069 Desulfohalobium retbaense DSM 5692 Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta YP_003197935.1 1259634 D 485915 CDS YP_003197936.1 258405194 8418895 1260230..1262041 1 NC_013223.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: avn:Avin_24740 RNA-directed DNA polymerase; RNA-directed DNA polymerase 1262041 8418895 Dret_1070 Desulfohalobium retbaense DSM 5692 RNA-directed DNA polymerase YP_003197936.1 1260230 D 485915 CDS YP_003197937.1 258405195 8418896 complement(1262173..1263282) 1 NC_013223.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: dma:DMR_20320 carbamoyl-phosphate synthase small chain; carbamoyl-phosphate synthase small subunit 1263282 8418896 Dret_1071 Desulfohalobium retbaense DSM 5692 carbamoyl-phosphate synthase small subunit YP_003197937.1 1262173 R 485915 CDS YP_003197938.1 258405196 8418897 complement(1263283..1264017) 1 NC_013223.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1264017 8418897 Dret_1072 Desulfohalobium retbaense DSM 5692 3-deoxy-manno-octulosonate cytidylyltransferase YP_003197938.1 1263283 R 485915 CDS YP_003197939.1 258405197 8418898 complement(1264020..1265309) 1 NC_013223.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: dde:Dde_0367 3-deoxy-D-manno-octulosonic-acid transferase, putative; three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 1265309 8418898 Dret_1073 Desulfohalobium retbaense DSM 5692 three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein YP_003197939.1 1264020 R 485915 CDS YP_003197940.1 258405198 8418899 complement(1265485..1266393) 1 NC_013223.1 KEGG: dvl:Dvul_2649 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 1266393 8418899 Dret_1074 Desulfohalobium retbaense DSM 5692 D-alanine--D-alanine ligase YP_003197940.1 1265485 R 485915 CDS YP_003197941.1 258405199 8418900 complement(1266350..1266961) 1 NC_013223.1 TIGRFAM: metal dependent phophohydrolase; KEGG: dde:Dde_0365 metal dependent phosphohydrolase; metal dependent phophohydrolase 1266961 8418900 Dret_1075 Desulfohalobium retbaense DSM 5692 metal dependent phophohydrolase YP_003197941.1 1266350 R 485915 CDS YP_003197942.1 258405200 8418901 1267396..1268484 1 NC_013223.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: dds:Ddes_0801 hydrogenase formation HypD protein; hydrogenase expression/formation protein HypD 1268484 8418901 Dret_1076 Desulfohalobium retbaense DSM 5692 hydrogenase expression/formation protein HypD YP_003197942.1 1267396 D 485915 CDS YP_003197943.1 258405201 8418902 1268647..1269657 1 NC_013223.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: dvl:Dvul_2656 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 1269657 8418902 Dret_1077 Desulfohalobium retbaense DSM 5692 hydrogenase expression/formation protein HypE YP_003197943.1 1268647 D 485915 CDS YP_003197944.1 258405202 8418903 complement(1269764..1270615) 1 NC_013223.1 KEGG: dma:DMR_26630 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 1270615 8418903 Dret_1078 Desulfohalobium retbaense DSM 5692 hydroxymethylbutenyl pyrophosphate reductase YP_003197944.1 1269764 R 485915 CDS YP_003197945.1 258405203 8418904 complement(1270692..1271678) 1 NC_013223.1 PFAM: dihydrouridine synthase DuS; KEGG: dvu:DVU0054 dihydrouridine synthase family protein; dihydrouridine synthase DuS 1271678 8418904 Dret_1079 Desulfohalobium retbaense DSM 5692 dihydrouridine synthase DuS YP_003197945.1 1270692 R 485915 CDS YP_003197946.1 258405204 8418905 complement(1271752..1272489) 1 NC_013223.1 PFAM: PP-loop domain protein; KEGG: dde:Dde_0244 hypothetical protein; PP-loop domain-containing protein 1272489 8418905 Dret_1080 Desulfohalobium retbaense DSM 5692 PP-loop domain-containing protein YP_003197946.1 1271752 R 485915 CDS YP_003197947.1 258405205 8418906 1272770..1272991 1 NC_013223.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; KEGG: dma:DMR_19960 DNA-directed RNA polymerase omega subunit; DNA-directed RNA polymerase subunit omega 1272991 8418906 Dret_1081 Desulfohalobium retbaense DSM 5692 DNA-directed RNA polymerase subunit omega YP_003197947.1 1272770 D 485915 CDS YP_003197948.1 258405206 8418907 1272984..1274093 1 NC_013223.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1274093 8418907 Dret_1082 Desulfohalobium retbaense DSM 5692 chaperone protein DnaJ YP_003197948.1 1272984 D 485915 CDS YP_003197949.1 258405207 8418908 1274095..1274583 1 NC_013223.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: dde:Dde_0249 GTP cyclohydrolase subunit MoaC; molybdenum cofactor biosynthesis protein C 1274583 8418908 Dret_1083 Desulfohalobium retbaense DSM 5692 molybdenum cofactor biosynthesis protein C YP_003197949.1 1274095 D 485915 CDS YP_003197950.1 258405208 8418909 complement(1274703..1275482) 1 NC_013223.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1275482 8418909 Dret_1084 Desulfohalobium retbaense DSM 5692 imidazole glycerol phosphate synthase subunit HisF YP_003197950.1 1274703 R 485915 CDS YP_003197951.1 258405209 8418910 complement(1275472..1276113) 1 NC_013223.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1276113 hisH 8418910 hisH Desulfohalobium retbaense DSM 5692 imidazole glycerol phosphate synthase subunit HisH YP_003197951.1 1275472 R 485915 CDS YP_003197952.1 258405210 8418911 1276218..1277213 1 NC_013223.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: dde:Dde_3466 ADP-glyceromanno-heptose 6- epimerase precursor; ADP-L-glycero-D-manno-heptose-6-epimerase 1277213 8418911 Dret_1086 Desulfohalobium retbaense DSM 5692 ADP-L-glycero-D-manno-heptose-6-epimerase YP_003197952.1 1276218 D 485915 CDS YP_003197953.1 258405211 8418912 complement(1277232..1278980) 1 NC_013223.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; KEGG: dde:Dde_3464 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL 1278980 8418912 Dret_1087 Desulfohalobium retbaense DSM 5692 DNA mismatch repair protein MutL YP_003197953.1 1277232 R 485915 CDS YP_003197954.1 258405212 8418913 complement(1278977..1281331) 1 NC_013223.1 PFAM: Organic solvent tolerance protein; KEGG: dde:Dde_1413 organic solvent tolerance protein, putative; organic solvent tolerance protein 1281331 8418913 Dret_1088 Desulfohalobium retbaense DSM 5692 organic solvent tolerance protein YP_003197954.1 1278977 R 485915 CDS YP_003197955.1 258405213 8418914 complement(1281441..1281740) 1 NC_013223.1 hypothetical protein 1281740 8418914 Dret_1089 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197955.1 1281441 R 485915 CDS YP_003197956.1 258405214 8418915 complement(1281942..1282796) 1 NC_013223.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dma:DMR_05100 hypothetical membrane protein; hypothetical protein 1282796 8418915 Dret_1090 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197956.1 1281942 R 485915 CDS YP_003197957.1 258405215 8418916 complement(1282801..1283529) 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_2857 ABC transporter related; ABC transporter 1283529 8418916 Dret_1091 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003197957.1 1282801 R 485915 CDS YP_003197958.1 258405216 8418917 complement(1283640..1284323) 1 NC_013223.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_1919 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 1284323 8418917 Dret_1092 Desulfohalobium retbaense DSM 5692 polar amino acid ABC transporter inner membrane subunit YP_003197958.1 1283640 R 485915 CDS YP_003197959.1 258405217 8418918 complement(1284417..1285160) 1 NC_013223.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dde:Dde_0168 extracellular solute-binding protein; family 3 extracellular solute-binding protein 1285160 8418918 Dret_1093 Desulfohalobium retbaense DSM 5692 family 3 extracellular solute-binding protein YP_003197959.1 1284417 R 485915 CDS YP_003197960.1 258405218 8418919 1285369..1285689 1 NC_013223.1 TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; KEGG: dma:DMR_27040 30S ribosomal protein S6; 30S ribosomal protein S6 1285689 8418919 Dret_1094 Desulfohalobium retbaense DSM 5692 30S ribosomal protein S6 YP_003197960.1 1285369 D 485915 CDS YP_003197961.1 258405219 8418920 1285691..1285951 1 NC_013223.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1285951 rpsR 8418920 rpsR Desulfohalobium retbaense DSM 5692 30S ribosomal protein S18 YP_003197961.1 1285691 D 485915 CDS YP_003197962.1 258405220 8418921 1285966..1286448 1 NC_013223.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 1286448 rplI 8418921 rplI Desulfohalobium retbaense DSM 5692 50S ribosomal protein L9 YP_003197962.1 1285966 D 485915 CDS YP_003197963.1 258405221 8418922 1286405..1287850 1 NC_013223.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: dvu:DVU0959 replicative DNA helicase; replicative DNA helicase 1287850 8418922 Dret_1097 Desulfohalobium retbaense DSM 5692 replicative DNA helicase YP_003197963.1 1286405 D 485915 CDS YP_003197964.1 258405222 8418923 1288017..1288523 1 NC_013223.1 PFAM: protein of unknown function DUF456; KEGG: dds:Ddes_0940 protein of unknown function DUF456; hypothetical protein 1288523 8418923 Dret_1098 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197964.1 1288017 D 485915 CDS YP_003197965.1 258405223 8418924 1288785..1290242 1 NC_013223.1 TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dde:Dde_0171 L-threonine synthase; threonine synthase 1290242 8418924 Dret_1099 Desulfohalobium retbaense DSM 5692 threonine synthase YP_003197965.1 1288785 D 485915 CDS YP_003197966.1 258405224 8418925 1290553..1291644 1 NC_013223.1 KEGG: dvl:Dvul_0387 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 1291644 8418925 Dret_1100 Desulfohalobium retbaense DSM 5692 3-isopropylmalate dehydrogenase YP_003197966.1 1290553 D 485915 CDS YP_003197967.1 258405225 8418926 1291654..1293630 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvm:DvMF_2379 ABC transporter related; ABC transporter 1293630 8418926 Dret_1101 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003197967.1 1291654 D 485915 CDS YP_003197968.1 258405226 8418927 1293614..1294024 1 NC_013223.1 PFAM: NUDIX hydrolase; KEGG: dvm:DvMF_2380 NUDIX hydrolase; NUDIX hydrolase 1294024 8418927 Dret_1102 Desulfohalobium retbaense DSM 5692 NUDIX hydrolase YP_003197968.1 1293614 D 485915 CDS YP_003197969.1 258405227 8418928 1294039..1295754 1 NC_013223.1 KEGG: gme:Gmet_1393 type II secretion system protein E; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; type IV-A pilus assembly ATPase PilB 1295754 8418928 Dret_1103 Desulfohalobium retbaense DSM 5692 type IV-A pilus assembly ATPase PilB YP_003197969.1 1294039 D 485915 CDS YP_003197970.1 258405228 8418929 1295864..1297069 1 NC_013223.1 PFAM: Type II secretion system F domain; KEGG: dal:Dalk_1782 type II secretion system protein; type II secretion system F domain-containing protein 1297069 8418929 Dret_1104 Desulfohalobium retbaense DSM 5692 type II secretion system F domain-containing protein YP_003197970.1 1295864 D 485915 CDS YP_003197971.1 258405229 8418930 1297323..1298204 1 NC_013223.1 KEGG: dma:DMR_16040 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 1298204 8418930 Dret_1105 Desulfohalobium retbaense DSM 5692 5,10-methylenetetrahydrofolate reductase YP_003197971.1 1297323 D 485915 CDS YP_003197972.1 258405230 8418931 1298361..1299383 1 NC_013223.1 KEGG: dde:Dde_0254 aspartate semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; aspartate-semialdehyde dehydrogenase 1299383 8418931 Dret_1106 Desulfohalobium retbaense DSM 5692 aspartate-semialdehyde dehydrogenase YP_003197972.1 1298361 D 485915 CDS YP_003197973.1 258405231 8418932 1299650..1300594 1 NC_013223.1 PFAM: aminotransferase class IV; KEGG: dma:DMR_16060 aminotransferase class IV; class IV aminotransferase 1300594 8418932 Dret_1107 Desulfohalobium retbaense DSM 5692 class IV aminotransferase YP_003197973.1 1299650 D 485915 CDS YP_003197974.1 258405232 8418933 1300594..1301667 1 NC_013223.1 PFAM: glycosyl transferase group 1; KEGG: dvm:DvMF_2384 glycosyl transferase group 1; group 1 glycosyl transferase 1301667 8418933 Dret_1108 Desulfohalobium retbaense DSM 5692 group 1 glycosyl transferase YP_003197974.1 1300594 D 485915 CDS YP_003197975.1 258405233 8418934 complement(1301643..1301909) 1 NC_013223.1 hypothetical protein 1301909 8418934 Dret_1109 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197975.1 1301643 R 485915 CDS YP_003197976.1 258405234 8418935 complement(1302071..1302967) 1 NC_013223.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: dde:Dde_0773 hypothetical protein; import inner membrane translocase subunit Tim44 1302967 8418935 Dret_1110 Desulfohalobium retbaense DSM 5692 import inner membrane translocase subunit Tim44 YP_003197976.1 1302071 R 485915 CDS YP_003197977.1 258405235 8418938 complement(1303601..1304512) 1 NC_013223.1 KEGG: dma:DMR_22050 phosphoribosylaminoimidazole- succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1304512 8418938 Dret_1111 Desulfohalobium retbaense DSM 5692 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_003197977.1 1303601 R 485915 CDS YP_003197978.1 258405236 8418939 complement(1304637..1305401) 1 NC_013223.1 KEGG: noc:Noc_1700 PAS sensor, signal transduction histidine kinase; hypothetical protein 1305401 8418939 Dret_1112 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197978.1 1304637 R 485915 CDS YP_003197979.1 258405237 8418940 complement(1305478..1305921) 1 NC_013223.1 PFAM: NIL domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_0262 4Fe-4S ferredoxin iron-sulfur binding domain protein; NIL domain-containing protein 1305921 8418940 Dret_1113 Desulfohalobium retbaense DSM 5692 NIL domain-containing protein YP_003197979.1 1305478 R 485915 CDS YP_003197980.1 258405238 8418941 complement(1306085..1306963) 1 NC_013223.1 KEGG: dde:Dde_2145 TPR domain-containing protein; TIGRFAM: tol-pal system protein YbgF; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; tol-pal system protein YbgF 1306963 8418941 Dret_1114 Desulfohalobium retbaense DSM 5692 tol-pal system protein YbgF YP_003197980.1 1306085 R 485915 CDS YP_003197981.1 258405239 8418942 complement(1306986..1307201) 1 NC_013223.1 KEGG: dvm:DvMF_0264 hypothetical protein; hypothetical protein 1307201 8418942 Dret_1115 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197981.1 1306986 R 485915 CDS YP_003197982.1 258405240 8418943 complement(1307201..1307950) 1 NC_013223.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: dal:Dalk_1768 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 1307950 8418943 Dret_1116 Desulfohalobium retbaense DSM 5692 prolipoprotein diacylglyceryl transferase YP_003197982.1 1307201 R 485915 CDS YP_003197983.1 258405241 8418944 complement(1307931..1308428) 1 NC_013223.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: dma:DMR_22180 lipoprotein signal peptidase; lipoprotein signal peptidase 1308428 8418944 Dret_1117 Desulfohalobium retbaense DSM 5692 lipoprotein signal peptidase YP_003197983.1 1307931 R 485915 CDS YP_003197984.1 258405242 8418945 complement(1308469..1311285) 1 NC_013223.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1311285 ileS 8418945 ileS Desulfohalobium retbaense DSM 5692 isoleucyl-tRNA synthetase YP_003197984.1 1308469 R 485915 CDS YP_003197985.1 258405243 8418946 complement(1311446..1312282) 1 NC_013223.1 TIGRFAM: inosine guanosine and xanthosine phosphorylase family; PFAM: purine or other phosphorylase family 1; KEGG: dvm:DvMF_0821 purine nucleoside phosphorylase; inosine guanosine and xanthosine phosphorylase family protein 1312282 8418946 Dret_1119 Desulfohalobium retbaense DSM 5692 inosine guanosine and xanthosine phosphorylase family protein YP_003197985.1 1311446 R 485915 CDS YP_003197986.1 258405244 8418947 1312942..1314357 1 NC_013223.1 PFAM: Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthase L chain ATP- binding; KEGG: dma:DMR_12700 acetyl-CoA carboxylase biotin carboxylase subunit; pyruvate carboxylase 1314357 8418947 Dret_1120 Desulfohalobium retbaense DSM 5692 pyruvate carboxylase YP_003197986.1 1312942 D 485915 CDS YP_003197987.1 258405245 8418948 1314424..1316673 1 NC_013223.1 PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: dvm:DvMF_0816 acetyl-CoA carboxylase; Acetyl-CoA carboxylase 1316673 8418948 Dret_1121 Desulfohalobium retbaense DSM 5692 Acetyl-CoA carboxylase YP_003197987.1 1314424 D 485915 CDS YP_003197988.1 258405246 8418949 1316737..1317420 1 NC_013223.1 KEGG: dvm:DvMF_0815 hypothetical protein; hypothetical protein 1317420 8418949 Dret_1122 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197988.1 1316737 D 485915 CDS YP_003197989.1 258405247 8418950 1317425..1317763 1 NC_013223.1 KEGG: dvl:Dvul_1018 hypothetical protein; hypothetical protein 1317763 8418950 Dret_1123 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197989.1 1317425 D 485915 CDS YP_003197990.1 258405248 8418951 1317826..1318296 1 NC_013223.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dds:Ddes_0455 single-strand binding protein; single-strand binding protein 1318296 8418951 Dret_1124 Desulfohalobium retbaense DSM 5692 single-strand binding protein YP_003197990.1 1317826 D 485915 CDS YP_003197991.1 258405249 8418952 1318531..1320840 1 NC_013223.1 KEGG: rfr:Rfer_2637 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1320840 8418952 Dret_1125 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor-containing diguanylate cyclase YP_003197991.1 1318531 D 485915 CDS YP_003197992.1 258405250 8418953 complement(1320881..1321117) 1 NC_013223.1 KEGG: dma:DMR_24220 hypothetical protein; hypothetical protein 1321117 8418953 Dret_1126 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197992.1 1320881 R 485915 CDS YP_003197993.1 258405251 8418954 complement(1321098..1322168) 1 NC_013223.1 hypothetical protein 1322168 8418954 Dret_1127 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003197993.1 1321098 R 485915 CDS YP_003197994.1 258405252 8418955 complement(1322140..1322925) 1 NC_013223.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dma:DMR_24200 chromosome partitioning protein ParA; Cobyrinic acid ac-diamide synthase 1322925 8418955 Dret_1128 Desulfohalobium retbaense DSM 5692 Cobyrinic acid ac-diamide synthase YP_003197994.1 1322140 R 485915 CDS YP_003197995.1 258405253 8418956 complement(1323131..1324141) 1 NC_013223.1 PFAM: aminodeoxychorismate lyase; KEGG: dde:Dde_0315 aminodeoxychorismate lyase; aminodeoxychorismate lyase 1324141 8418956 Dret_1129 Desulfohalobium retbaense DSM 5692 aminodeoxychorismate lyase YP_003197995.1 1323131 R 485915 CDS YP_003197996.1 258405254 8418957 complement(1324184..1324612) 1 NC_013223.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: dde:Dde_0314 Holliday junction resolvase YqgF; Holliday junction resolvase YqgF 1324612 8418957 Dret_1130 Desulfohalobium retbaense DSM 5692 Holliday junction resolvase YqgF YP_003197996.1 1324184 R 485915 CDS YP_003197997.1 258405255 8418958 complement(1324630..1328223) 1 NC_013223.1 PFAM: FAD linked oxidase domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dma:DMR_33110 putative FAD linked oxidase; FAD linked oxidase domain-containing protein 1328223 8418958 Dret_1131 Desulfohalobium retbaense DSM 5692 FAD linked oxidase domain-containing protein YP_003197997.1 1324630 R 485915 CDS YP_003197998.1 258405256 8418959 complement(1328716..1329972) 1 NC_013223.1 KEGG: dma:DMR_11340 phenylacetate-coenzyme A ligase; phenylacetate--CoA ligase 1329972 8418959 Dret_1132 Desulfohalobium retbaense DSM 5692 phenylacetate--CoA ligase YP_003197998.1 1328716 R 485915 CDS YP_003197999.1 258405257 8418960 complement(1329984..1330769) 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bav:BAV2835 ABC transporter, ATP-binding protein; ABC transporter 1330769 8418960 Dret_1133 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003197999.1 1329984 R 485915 CDS YP_003198000.1 258405258 8418961 complement(1330766..1331497) 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_4073 ABC transporter related; ABC transporter 1331497 8418961 Dret_1134 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003198000.1 1330766 R 485915 CDS YP_003198001.1 258405259 8418962 complement(1331545..1332441) 1 NC_013223.1 PFAM: inner-membrane translocator; KEGG: gbm:Gbem_2187 inner-membrane translocator; inner-membrane translocator 1332441 8418962 Dret_1135 Desulfohalobium retbaense DSM 5692 inner-membrane translocator YP_003198001.1 1331545 R 485915 CDS YP_003198002.1 258405260 8418963 complement(1332472..1333332) 1 NC_013223.1 PFAM: inner-membrane translocator; KEGG: dma:DMR_22440 ABC transporter permease protein; inner-membrane translocator 1333332 8418963 Dret_1136 Desulfohalobium retbaense DSM 5692 inner-membrane translocator YP_003198002.1 1332472 R 485915 CDS YP_003198003.1 258405261 8418964 complement(1333395..1334576) 1 NC_013223.1 PFAM: Extracellular ligand-binding receptor; KEGG: mxa:MXAN_6665 putative branched chain amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular ligand-binding receptor 1334576 8418964 Dret_1137 Desulfohalobium retbaense DSM 5692 extracellular ligand-binding receptor YP_003198003.1 1333395 R 485915 CDS YP_003198004.1 258405262 8418965 complement(1334664..1335095) 1 NC_013223.1 PFAM: amino acid-binding ACT domain protein; KEGG: dvm:DvMF_0447 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 1335095 8418965 Dret_1138 Desulfohalobium retbaense DSM 5692 amino acid-binding ACT domain-containing protein YP_003198004.1 1334664 R 485915 CDS YP_003198005.1 258405263 8418966 complement(1335301..1336608) 1 NC_013223.1 KEGG: dma:DMR_25440 phenylacetate-coenzyme A ligase; phenylacetate--CoA ligase 1336608 8418966 Dret_1139 Desulfohalobium retbaense DSM 5692 phenylacetate--CoA ligase YP_003198005.1 1335301 R 485915 CDS YP_003198006.1 258405264 8418967 1337079..1337471 1 NC_013223.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: dma:DMR_25430 hypothetical protein; iojap family protein 1337471 8418967 Dret_1140 Desulfohalobium retbaense DSM 5692 iojap family protein YP_003198006.1 1337079 D 485915 CDS YP_003198007.1 258405265 8418968 1337464..1339038 1 NC_013223.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 1339038 8418968 Dret_1141 Desulfohalobium retbaense DSM 5692 phosphoglyceromutase YP_003198007.1 1337464 D 485915 CDS YP_003198008.1 258405266 8418969 1339035..1339274 1 NC_013223.1 KEGG: dvm:DvMF_0438 hypothetical protein; hypothetical protein 1339274 8418969 Dret_1142 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198008.1 1339035 D 485915 CDS YP_003198009.1 258405267 8418970 complement(1339457..1340335) 1 NC_013223.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: maq:Maqu_2825 hypothetical protein; hypothetical protein 1340335 8418970 Dret_1143 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198009.1 1339457 R 485915 CDS YP_003198010.1 258405268 8418971 1340414..1341559 1 NC_013223.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1341559 8418971 Dret_1144 Desulfohalobium retbaense DSM 5692 aspartate aminotransferase YP_003198010.1 1340414 D 485915 CDS YP_003198011.1 258405269 8418972 1341789..1342499 1 NC_013223.1 KEGG: pla:Plav_1484 phosphatidylcholine synthase; phosphatidylcholine synthase 1342499 8418972 Dret_1145 Desulfohalobium retbaense DSM 5692 phosphatidylcholine synthase YP_003198011.1 1341789 D 485915 CDS YP_003198012.1 258405270 8418974 1343082..1343552 1 NC_013223.1 PFAM: UspA domain protein; KEGG: sfu:Sfum_0818 UspA domain protein; UspA domain-containing protein 1343552 8418974 Dret_1146 Desulfohalobium retbaense DSM 5692 UspA domain-containing protein YP_003198012.1 1343082 D 485915 CDS YP_003198013.1 258405271 8418975 1343649..1344077 1 NC_013223.1 PFAM: Class I peptide chain release factor; KEGG: tgr:Tgr7_1684 class I peptide chain release factor; class I peptide chain release factor 1344077 8418975 Dret_1147 Desulfohalobium retbaense DSM 5692 class I peptide chain release factor YP_003198013.1 1343649 D 485915 CDS YP_003198014.1 258405272 8418976 1344161..1345411 1 NC_013223.1 PFAM: metallophosphoesterase; KEGG: dat:HRM2_43350 DNA repair exonuclease family protein; metallophosphoesterase 1345411 8418976 Dret_1148 Desulfohalobium retbaense DSM 5692 metallophosphoesterase YP_003198014.1 1344161 D 485915 CDS YP_003198015.1 258405273 8418977 1345408..1348899 1 NC_013223.1 PFAM: SMC domain protein; KEGG: dat:HRM2_43340 hypothetical protein; SMC domain-containing protein 1348899 8418977 Dret_1149 Desulfohalobium retbaense DSM 5692 SMC domain-containing protein YP_003198015.1 1345408 D 485915 CDS YP_003198016.1 258405274 8418978 1349150..1349818 1 NC_013223.1 KEGG: tmz:Tmz1t_0643 methyltransferase type 12; methyltransferase type 12 1349818 8418978 Dret_1150 Desulfohalobium retbaense DSM 5692 methyltransferase type 12 YP_003198016.1 1349150 D 485915 CDS YP_003198017.1 258405275 8418979 complement(1350483..1351868) 1 NC_013223.1 KEGG: cvi:CV_2648 D-serine dehydratase; TIGRFAM: D-serine ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; D-serine ammonia-lyase 1351868 8418979 Dret_1151 Desulfohalobium retbaense DSM 5692 D-serine ammonia-lyase YP_003198017.1 1350483 R 485915 CDS YP_003198018.1 258405276 8418980 1352416..1354692 1 NC_013223.1 KEGG: dat:HRM2_15700 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: Transcriptional regulator, histidine kinase sensor-like; PAS fold-3 domain protein; response regulator receiver; PAS fold domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAC repeat-containing protein; histidine kinase A domain protein; PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 1354692 8418980 Dret_1152 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor hybrid histidine kinase YP_003198018.1 1352416 D 485915 CDS YP_003198019.1 258405277 8418981 complement(1354844..1357654) 1 NC_013223.1 KEGG: har:HEAR1092 putative sensory protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1357654 8418981 Dret_1153 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_003198019.1 1354844 R 485915 CDS YP_003198020.1 258405278 8418982 complement(1357798..1359240) 1 NC_013223.1 SMART: AAA ATPase; KEGG: sat:SYN_00051 ATPase with chaperone activity; ATPase AAA 1359240 8418982 Dret_1154 Desulfohalobium retbaense DSM 5692 ATPase AAA YP_003198020.1 1357798 R 485915 CDS YP_003198021.1 258405279 8418983 complement(1359246..1359803) 1 NC_013223.1 KEGG: csa:Csal_2511 hypothetical protein; hypothetical protein 1359803 8418983 Dret_1155 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198021.1 1359246 R 485915 CDS YP_003198022.1 258405280 8418984 complement(1359980..1360948) 1 NC_013223.1 PFAM: OmpA/MotB domain protein; KEGG: dat:HRM2_27280 OmpA2; OmpA/MotB domain-containing protein 1360948 8418984 Dret_1156 Desulfohalobium retbaense DSM 5692 OmpA/MotB domain-containing protein YP_003198022.1 1359980 R 485915 CDS YP_003198023.1 258405281 8418985 complement(1361058..1362626) 1 NC_013223.1 PFAM: TPR repeat-containing protein; Sporulation domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: sat:SYN_01500 TPR repeat-containing protein; hypothetical protein 1362626 8418985 Dret_1157 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198023.1 1361058 R 485915 CDS YP_003198024.1 258405282 8418986 complement(1362746..1363693) 1 NC_013223.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: sat:SYN_01501 TPR repeat-containing protein; hypothetical protein 1363693 8418986 Dret_1158 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198024.1 1362746 R 485915 CDS YP_003198025.1 258405283 8418987 complement(1363773..1364735) 1 NC_013223.1 PFAM: Type II secretion system F domain; KEGG: sfu:Sfum_1500 type II secretion system protein; type II secretion system F domain-containing protein 1364735 8418987 Dret_1159 Desulfohalobium retbaense DSM 5692 type II secretion system F domain-containing protein YP_003198025.1 1363773 R 485915 CDS YP_003198026.1 258405284 8418988 complement(1364914..1365885) 1 NC_013223.1 PFAM: Type II secretion system F domain; KEGG: sfu:Sfum_1499 type II secretion system protein; type II secretion system F domain-containing protein 1365885 8418988 Dret_1160 Desulfohalobium retbaense DSM 5692 type II secretion system F domain-containing protein YP_003198026.1 1364914 R 485915 CDS YP_003198027.1 258405285 8418989 complement(1365926..1367335) 1 NC_013223.1 PFAM: type II secretion system protein E; KEGG: sfu:Sfum_1498 type II secretion system protein E; type II secretion system protein E 1367335 8418989 Dret_1161 Desulfohalobium retbaense DSM 5692 type II secretion system protein E YP_003198027.1 1365926 R 485915 CDS YP_003198028.1 258405286 8418990 complement(1367450..1368619) 1 NC_013223.1 KEGG: sfu:Sfum_1497 response regulator receiver protein; response regulator receiver protein 1368619 8418990 Dret_1162 Desulfohalobium retbaense DSM 5692 response regulator receiver protein YP_003198028.1 1367450 R 485915 CDS YP_003198029.1 258405287 8418991 complement(1368710..1369681) 1 NC_013223.1 PFAM: Protein of unknown function DUF2134, membrane; KEGG: vvy:VV2658 hypothetical protein; hypothetical protein 1369681 8418991 Dret_1163 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198029.1 1368710 R 485915 CDS YP_003198030.1 258405288 8418992 complement(1369700..1370107) 1 NC_013223.1 PFAM: TadE family protein; KEGG: sat:SYN_01494 flp pilus assembly protein family protein; TadE family protein 1370107 8418992 Dret_1164 Desulfohalobium retbaense DSM 5692 TadE family protein YP_003198030.1 1369700 R 485915 CDS YP_003198031.1 258405289 8418993 complement(1370136..1370567) 1 NC_013223.1 PFAM: TadE family protein; KEGG: sfu:Sfum_1495 TadE family protein; TadE family protein 1370567 8418993 Dret_1165 Desulfohalobium retbaense DSM 5692 TadE family protein YP_003198031.1 1370136 R 485915 CDS YP_003198032.1 258405290 8418994 complement(1370771..1371085) 1 NC_013223.1 hypothetical protein 1371085 8418994 Dret_1166 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198032.1 1370771 R 485915 CDS YP_003198033.1 258405291 8418995 complement(1371223..1372590) 1 NC_013223.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: sfu:Sfum_1493 type II and III secretion system protein; type II and III secretion system protein 1372590 8418995 Dret_1167 Desulfohalobium retbaense DSM 5692 type II and III secretion system protein YP_003198033.1 1371223 R 485915 CDS YP_003198034.1 258405292 8418996 complement(1372662..1373549) 1 NC_013223.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: sfu:Sfum_1492 SAF domain; Flp pilus assembly protein CpaB 1373549 8418996 Dret_1168 Desulfohalobium retbaense DSM 5692 Flp pilus assembly protein CpaB YP_003198034.1 1372662 R 485915 CDS YP_003198035.1 258405293 8418997 complement(1374030..1375367) 1 NC_013223.1 PFAM: transposase IS4 family protein; KEGG: maq:Maqu_0982 transposase, IS4 family protein; transposase IS4 family protein 1375367 8418997 Dret_1169 Desulfohalobium retbaense DSM 5692 transposase IS4 family protein YP_003198035.1 1374030 R 485915 CDS YP_003198036.1 258405294 8418998 complement(1375494..1376063) 1 NC_013223.1 PFAM: peptidase A24A prepilin type IV; KEGG: sat:SYN_01490 flp pilus assembly protein, protease; peptidase A24A prepilin type IV 1376063 8418998 Dret_1170 Desulfohalobium retbaense DSM 5692 peptidase A24A prepilin type IV YP_003198036.1 1375494 R 485915 CDS YP_003198037.1 258405295 8418999 complement(1376079..1376249) 1 NC_013223.1 PFAM: Flp/Fap pilin component; KEGG: dps:DP1538 pilus assembly protein pilin subunit; Flp/Fap pilin component 1376249 8418999 Dret_1171 Desulfohalobium retbaense DSM 5692 Flp/Fap pilin component YP_003198037.1 1376079 R 485915 CDS YP_003198038.1 258405296 8419000 complement(1376346..1376516) 1 NC_013223.1 PFAM: Flp/Fap pilin component; KEGG: afw:Anae109_3972 Flp/Fap pilin component; Flp/Fap pilin component 1376516 8419000 Dret_1172 Desulfohalobium retbaense DSM 5692 Flp/Fap pilin component YP_003198038.1 1376346 R 485915 CDS YP_003198039.1 258405297 8419001 1377088..1378047 1 NC_013223.1 PFAM: glycosyl transferase family 2; KEGG: rpi:Rpic_0600 glycosyl transferase family 2; family 2 glycosyl transferase 1378047 8419001 Dret_1173 Desulfohalobium retbaense DSM 5692 family 2 glycosyl transferase YP_003198039.1 1377088 D 485915 CDS YP_003198040.1 258405298 8419002 1378164..1379390 1 NC_013223.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1379390 8419002 Dret_1174 Desulfohalobium retbaense DSM 5692 transposase IS204/IS1001/IS1096/IS1165 family protein YP_003198040.1 1378164 D 485915 CDS YP_003198041.1 258405299 8419003 1379623..1381122 1 NC_013223.1 KEGG: dat:HRM2_39510 IstA2; IstA2 1381122 8419003 Dret_1175 Desulfohalobium retbaense DSM 5692 IstA2 YP_003198041.1 1379623 D 485915 CDS YP_003198042.1 258405300 8419004 1381119..1381877 1 NC_013223.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pca:Pcar_0791 putative DNA replication factor; IstB domain-containing protein ATP-binding protein 1381877 8419004 Dret_1176 Desulfohalobium retbaense DSM 5692 IstB domain-containing protein ATP-binding protein YP_003198042.1 1381119 D 485915 CDS YP_003198043.1 258405301 8419005 complement(1382148..1383374) 1 NC_013223.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1383374 8419005 Dret_1177 Desulfohalobium retbaense DSM 5692 transposase IS204/IS1001/IS1096/IS1165 family protein YP_003198043.1 1382148 R 485915 CDS YP_003198044.1 258405302 8419006 complement(1383483..1385039) 1 NC_013223.1 KEGG: ppd:Ppro_2695 hypothetical protein; hypothetical protein 1385039 8419006 Dret_1178 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198044.1 1383483 R 485915 CDS YP_003198045.1 258405303 8419007 complement(1385173..1386702) 1 NC_013223.1 PFAM: Protein of unknown function DUF2079, membrane; KEGG: scl:sce7388 hypothetical protein; hypothetical protein 1386702 8419007 Dret_1179 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198045.1 1385173 R 485915 CDS YP_003198046.1 258405304 8419008 1386998..1387999 1 NC_013223.1 PFAM: glycosyl transferase family 2; KEGG: amc:MADE_02590 glycosyl transferase, family 2; family 2 glycosyl transferase 1387999 8419008 Dret_1180 Desulfohalobium retbaense DSM 5692 family 2 glycosyl transferase YP_003198046.1 1386998 D 485915 CDS YP_003198047.1 258405305 8419009 1388142..1389401 1 NC_013223.1 PFAM: glycosyl transferase group 1; KEGG: amc:MADE_02589 glycosyltransferase; group 1 glycosyl transferase 1389401 8419009 Dret_1181 Desulfohalobium retbaense DSM 5692 group 1 glycosyl transferase YP_003198047.1 1388142 D 485915 CDS YP_003198048.1 258405306 8419010 complement(1389493..1390416) 1 NC_013223.1 hypothetical protein 1390416 8419010 Dret_1182 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198048.1 1389493 R 485915 CDS YP_003198049.1 258405307 8419011 complement(1390413..1391312) 1 NC_013223.1 KEGG: scl:sce8020 hypothetical protein; hypothetical protein 1391312 8419011 Dret_1183 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198049.1 1390413 R 485915 CDS YP_003198050.1 258405308 8419012 complement(1391604..1393820) 1 NC_013223.1 KEGG: mfa:Mfla_1183 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS domain containing protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 1393820 8419012 Dret_1184 Desulfohalobium retbaense DSM 5692 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_003198050.1 1391604 R 485915 CDS YP_003198051.1 258405309 8419013 complement(1393813..1395903) 1 NC_013223.1 PFAM: Metal-dependent hydrolase HDOD; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: rfr:Rfer_2486 histidine kinase; signal transduction histidine kinase, nitrogen specific, NtrB 1395903 8419013 Dret_1185 Desulfohalobium retbaense DSM 5692 signal transduction histidine kinase, nitrogen specific, NtrB YP_003198051.1 1393813 R 485915 CDS YP_003198052.1 258405310 8419014 complement(1396201..1396296) 1 NC_013223.1 hypothetical protein 1396296 8419014 Dret_1186 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198052.1 1396201 R 485915 CDS YP_003198053.1 258405311 8419015 1397241..1397696 1 NC_013223.1 PFAM: protein of unknown function DUF107; KEGG: dps:DP1870 hypothetical protein; hypothetical protein 1397696 8419015 Dret_1187 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198053.1 1397241 D 485915 CDS YP_003198054.1 258405312 8419016 1397715..1398647 1 NC_013223.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: dps:DP1869 hypothetical protein; hypothetical protein 1398647 8419016 Dret_1188 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198054.1 1397715 D 485915 CDS YP_003198055.1 258405313 8419017 complement(1398679..1400283) 1 NC_013223.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: dma:DMR_40640 putative transport protein; sodium/hydrogen exchanger 1400283 8419017 Dret_1189 Desulfohalobium retbaense DSM 5692 sodium/hydrogen exchanger YP_003198055.1 1398679 R 485915 CDS YP_003198056.1 258405314 8419018 complement(1400503..1400898) 1 NC_013223.1 KEGG: dal:Dalk_5271 hypothetical protein; hypothetical protein 1400898 8419018 Dret_1190 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198056.1 1400503 R 485915 CDS YP_003198057.1 258405315 8419019 complement(1401026..1401310) 1 NC_013223.1 KEGG: dol:Dole_2385 hypothetical protein; hypothetical protein 1401310 8419019 Dret_1191 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198057.1 1401026 R 485915 CDS YP_003198058.1 258405316 8419020 complement(1401307..1404153) 1 NC_013223.1 KEGG: dol:Dole_2384 hypothetical protein; hypothetical protein 1404153 8419020 Dret_1192 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198058.1 1401307 R 485915 CDS YP_003198059.1 258405317 8419021 complement(1404505..1404912) 1 NC_013223.1 PFAM: Protein of unknown function DUF2177, membrane; KEGG: dol:Dole_0351 hypothetical protein; hypothetical protein 1404912 8419021 Dret_1193 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198059.1 1404505 R 485915 CDS YP_003198060.1 258405318 8419022 1405215..1406171 1 NC_013223.1 PFAM: Auxin Efflux Carrier; KEGG: dat:HRM2_47110 putative permease; auxin efflux carrier family protein 1406171 8419022 Dret_1194 Desulfohalobium retbaense DSM 5692 auxin efflux carrier family protein YP_003198060.1 1405215 D 485915 CDS YP_003198061.1 258405319 8419023 1406271..1407047 1 NC_013223.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: glo:Glov_3339 phage SPO1 DNA polymerase- related protein; phage SPO1 DNA polymerase-like protein 1407047 8419023 Dret_1195 Desulfohalobium retbaense DSM 5692 phage SPO1 DNA polymerase-like protein YP_003198061.1 1406271 D 485915 CDS YP_003198062.1 258405320 8419024 1407328..1407897 1 NC_013223.1 KEGG: dps:DP1297 hypothetical protein; hypothetical protein 1407897 8419024 Dret_1196 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198062.1 1407328 D 485915 CDS YP_003198063.1 258405321 8419025 1407961..1409334 1 NC_013223.1 KEGG: dps:DP2951 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1409334 8419025 Dret_1197 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor-containing diguanylate cyclase YP_003198063.1 1407961 D 485915 CDS YP_003198064.1 258405322 8419026 complement(1409515..1409934) 1 NC_013223.1 KEGG: gsu:GSU1412 hypothetical protein; hypothetical protein 1409934 8419026 Dret_1198 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198064.1 1409515 R 485915 CDS YP_003198065.1 258405323 8419027 complement(1410067..1411614) 1 NC_013223.1 PFAM: Bile acid:sodium symporter; UspA domain protein; KEGG: dal:Dalk_1082 bile acid:sodium symporter; bile acid:sodium symporter 1411614 8419027 Dret_1199 Desulfohalobium retbaense DSM 5692 bile acid:sodium symporter YP_003198065.1 1410067 R 485915 CDS YP_003198066.1 258405324 8419028 complement(1411823..1412119) 1 NC_013223.1 PFAM: Thioredoxin domain; KEGG: dal:Dalk_1080 thioredoxin; thioredoxin domain-containing protein 1412119 8419028 Dret_1200 Desulfohalobium retbaense DSM 5692 thioredoxin domain-containing protein YP_003198066.1 1411823 R 485915 CDS YP_003198067.1 258405325 8419029 1412408..1413823 1 NC_013223.1 KEGG: dal:Dalk_1079 PAS modulated sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: AAA ATPase; PAS domain containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator 1413823 8419029 Dret_1201 Desulfohalobium retbaense DSM 5692 PAS modulated Fis family sigma-54-specific transcriptional regulator YP_003198067.1 1412408 D 485915 CDS YP_003198068.1 258405326 8419030 1414109..1414576 1 NC_013223.1 PFAM: PEBP family protein; KEGG: sun:SUN_0961 hypothetical protein; PEBP family protein 1414576 8419030 Dret_1202 Desulfohalobium retbaense DSM 5692 PEBP family protein YP_003198068.1 1414109 D 485915 CDS YP_003198069.1 258405327 8419031 1414702..1415739 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_0285 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1415739 8419031 Dret_1203 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003198069.1 1414702 D 485915 CDS YP_003198070.1 258405328 8419032 1415918..1416442 1 NC_013223.1 PFAM: nitroreductase; KEGG: dvl:Dvul_0809 nitroreductase; nitroreductase 1416442 8419032 Dret_1204 Desulfohalobium retbaense DSM 5692 nitroreductase YP_003198070.1 1415918 D 485915 CDS YP_003198071.1 258405329 8419033 1416761..1417339 1 NC_013223.1 PFAM: Rubrerythrin; KEGG: glo:Glov_1797 rubrerythrin; rubrerythrin 1417339 8419033 Dret_1205 Desulfohalobium retbaense DSM 5692 rubrerythrin YP_003198071.1 1416761 D 485915 CDS YP_003198072.1 258405330 8419034 1417871..1418866 1 NC_013223.1 PFAM: protein of unknown function DUF1611; KEGG: mes:Meso_0034 protein of unknown function DUF1611; hypothetical protein 1418866 8419034 Dret_1206 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198072.1 1417871 D 485915 CDS YP_003198073.1 258405331 8419035 1418863..1419846 1 NC_013223.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: tau:Tola_0562 mandelate racemase/muconate lactonizing protein; mandelate racemase/muconate lactonizing protein 1419846 8419035 Dret_1207 Desulfohalobium retbaense DSM 5692 mandelate racemase/muconate lactonizing protein YP_003198073.1 1418863 D 485915 CDS YP_003198074.1 258405332 8419036 1419977..1420831 1 NC_013223.1 PFAM: aminotransferase class IV; KEGG: rlg:Rleg_0536 aminotransferase class IV; class IV aminotransferase 1420831 8419036 Dret_1208 Desulfohalobium retbaense DSM 5692 class IV aminotransferase YP_003198074.1 1419977 D 485915 CDS YP_003198075.1 258405333 8419037 complement(1420871..1421092) 1 NC_013223.1 hypothetical protein 1421092 8419037 Dret_1209 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198075.1 1420871 R 485915 CDS YP_003198076.1 258405334 8419038 complement(1421092..1422681) 1 NC_013223.1 PFAM: Radical SAM domain protein; KEGG: dol:Dole_0890 radical SAM domain-containing protein; radical SAM protein 1422681 8419038 Dret_1210 Desulfohalobium retbaense DSM 5692 radical SAM protein YP_003198076.1 1421092 R 485915 CDS YP_003198077.1 258405335 8419039 complement(1423090..1423197) 1 NC_013223.1 hypothetical protein 1423197 8419039 Dret_1211 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198077.1 1423090 R 485915 CDS YP_003198078.1 258405336 8419040 complement(1423184..1423327) 1 NC_013223.1 hypothetical protein 1423327 8419040 Dret_1212 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198078.1 1423184 R 485915 CDS YP_003198079.1 258405337 8419041 1423613..1424359 1 NC_013223.1 KEGG: tgr:Tgr7_1681 hypothetical protein; hypothetical protein 1424359 8419041 Dret_1213 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198079.1 1423613 D 485915 CDS YP_003198080.1 258405338 8419042 1424712..1425044 1 NC_013223.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: gbm:Gbem_3791 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 1425044 8419042 Dret_1214 Desulfohalobium retbaense DSM 5692 antibiotic biosynthesis monooxygenase YP_003198080.1 1424712 D 485915 CDS YP_003198081.1 258405339 8419043 1425086..1425508 1 NC_013223.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dal:Dalk_4724 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 1425508 8419043 Dret_1215 Desulfohalobium retbaense DSM 5692 Glyoxalase/bleomycin resistance protein/dioxygenase YP_003198081.1 1425086 D 485915 CDS YP_003198082.1 258405340 8419044 1425505..1425840 1 NC_013223.1 KEGG: cti:RALTA_B0427 hypothetical protein; hypothetical protein 1425840 8419044 Dret_1216 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198082.1 1425505 D 485915 CDS YP_003198083.1 258405341 8419045 1426124..1427155 1 NC_013223.1 PFAM: Radical SAM domain protein; KEGG: dvm:DvMF_2991 radical SAM domain protein; radical SAM protein 1427155 8419045 Dret_1217 Desulfohalobium retbaense DSM 5692 radical SAM protein YP_003198083.1 1426124 D 485915 CDS YP_003198084.1 258405342 8419046 1427253..1427885 1 NC_013223.1 KEGG: sfu:Sfum_3540 hypothetical protein; hypothetical protein 1427885 8419046 Dret_1218 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198084.1 1427253 D 485915 CDS YP_003198085.1 258405343 8419047 complement(1428078..1428392) 1 NC_013223.1 hypothetical protein 1428392 8419047 Dret_1219 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198085.1 1428078 R 485915 CDS YP_003198086.1 258405344 8419048 complement(1428505..1430286) 1 NC_013223.1 PFAM: Uncharacterised protein family UPF0324; KEGG: dvm:DvMF_1363 hypothetical protein; hypothetical protein 1430286 8419048 Dret_1220 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198086.1 1428505 R 485915 CDS YP_003198087.1 258405345 8419049 1431021..1433609 1 NC_013223.1 KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; multi-sensor signal transduction histidine kinase 1433609 8419049 Dret_1221 Desulfohalobium retbaense DSM 5692 multi-sensor signal transduction histidine kinase YP_003198087.1 1431021 D 485915 CDS YP_003198088.1 258405346 8419050 1433729..1435141 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dma:DMR_33180 response regulator; putative two component, sigma54 specific, transcriptional regulator, Fis family 1435141 8419050 Dret_1222 Desulfohalobium retbaense DSM 5692 putative two component, sigma54 specific, transcriptional regulator, Fis family YP_003198088.1 1433729 D 485915 CDS YP_003198089.1 258405347 8419051 complement(1435335..1435676) 1 NC_013223.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: dps:DP2053 hypothetical protein; alkylhydroperoxidase 1435676 8419051 Dret_1223 Desulfohalobium retbaense DSM 5692 alkylhydroperoxidase YP_003198089.1 1435335 R 485915 CDS YP_003198090.1 258405348 8419052 1435927..1437192 1 NC_013223.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sat:SYN_01172 Co/Zn/Cd cation transporter; cation diffusion facilitator family transporter 1437192 8419052 Dret_1224 Desulfohalobium retbaense DSM 5692 cation diffusion facilitator family transporter YP_003198090.1 1435927 D 485915 CDS YP_003198091.1 258405349 8419053 complement(1437349..1438980) 1 NC_013223.1 PFAM: formylmethanofuran dehydrogenase subunit E region; molybdopterin binding domain; KEGG: dde:Dde_0685 tungsten formylmethanofuran dehydrogenase family protein/molybdopterin binding protein; formylmethanofuran dehydrogenase subunit E 1438980 8419053 Dret_1225 Desulfohalobium retbaense DSM 5692 formylmethanofuran dehydrogenase subunit E YP_003198091.1 1437349 R 485915 CDS YP_003198092.1 258405350 8419054 complement(1439047..1439592) 1 NC_013223.1 KEGG: dvm:DvMF_0928 hypothetical protein; hypothetical protein 1439592 8419054 Dret_1226 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198092.1 1439047 R 485915 CDS YP_003198093.1 258405351 8419055 complement(1439630..1440430) 1 NC_013223.1 KEGG: dvm:DvMF_0933 molybdopterin-containing oxidoreductase membrane anchor subunit; molybdopterin-containing oxidoreductase membrane anchor subunit 1440430 8419055 Dret_1227 Desulfohalobium retbaense DSM 5692 molybdopterin-containing oxidoreductase membrane anchor subunit YP_003198093.1 1439630 R 485915 CDS YP_003198094.1 258405352 8419056 complement(1440427..1440996) 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_0932 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1440996 8419056 Dret_1228 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003198094.1 1440427 R 485915 CDS YP_003198095.1 258405353 8419057 complement(1441054..1443330) 1 NC_013223.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: dvm:DvMF_0931 molybdopterin oxidoreductase; molybdopterin oxidoreductase 1443330 8419057 Dret_1229 Desulfohalobium retbaense DSM 5692 molybdopterin oxidoreductase YP_003198095.1 1441054 R 485915 CDS YP_003198096.1 258405354 8419058 complement(1443320..1443910) 1 NC_013223.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: dvm:DvMF_2471 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 1443910 8419058 Dret_1230 Desulfohalobium retbaense DSM 5692 cytoplasmic chaperone TorD family protein YP_003198096.1 1443320 R 485915 CDS YP_003198097.1 258405355 8419059 complement(1444136..1445461) 1 NC_013223.1 KEGG: dvm:DvMF_0929 transcriptional regulator, LuxR family; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; PAS domain containing protein; transcriptional regulator, LuxR family 1445461 8419059 Dret_1231 Desulfohalobium retbaense DSM 5692 transcriptional regulator, LuxR family YP_003198097.1 1444136 R 485915 CDS YP_003198098.1 258405356 8419060 complement(1445552..1445692) 1 NC_013223.1 hypothetical protein 1445692 8419060 Dret_1232 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198098.1 1445552 R 485915 CDS YP_003198099.1 258405357 8419061 1445734..1446411 1 NC_013223.1 SMART: regulatory protein Crp; KEGG: dma:DMR_25770 putative carbon monoxide dehydrogenase CooA protein; CarD family transcriptional regulator 1446411 8419061 Dret_1233 Desulfohalobium retbaense DSM 5692 CarD family transcriptional regulator YP_003198099.1 1445734 D 485915 CDS YP_003198100.1 258405358 8419062 1446576..1448465 1 NC_013223.1 KEGG: dma:DMR_25780 putative carbon monoxide dehydrogenase; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; carbon-monoxide dehydrogenase, catalytic subunit 1448465 8419062 Dret_1234 Desulfohalobium retbaense DSM 5692 carbon-monoxide dehydrogenase, catalytic subunit YP_003198100.1 1446576 D 485915 CDS YP_003198101.1 258405359 8419063 1448562..1449338 1 NC_013223.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dvm:DvMF_2232 carbon monoxide dehydrogenase accessory protein CooC, putative; Cobyrinic acid ac-diamide synthase 1449338 8419063 Dret_1235 Desulfohalobium retbaense DSM 5692 Cobyrinic acid ac-diamide synthase YP_003198101.1 1448562 D 485915 CDS YP_003198102.1 258405360 8419064 complement(1449587..1451038) 1 NC_013223.1 PFAM: Catalase related subgroup; Catalase domain protein; KEGG: csa:Csal_0803 catalase; catalase 1451038 8419064 Dret_1236 Desulfohalobium retbaense DSM 5692 catalase YP_003198102.1 1449587 R 485915 CDS YP_003198103.1 258405361 8419065 1451530..1452276 1 NC_013223.1 PFAM: beta-lactamase domain protein; KEGG: dat:HRM2_46910 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 1452276 8419065 Dret_1237 Desulfohalobium retbaense DSM 5692 beta-lactamase domain-containing protein YP_003198103.1 1451530 D 485915 CDS YP_003198104.1 258405362 8419066 complement(1452321..1454372) 1 NC_013223.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; protein of unknown function DUF1365; KEGG: dat:HRM2_48620 cation-efflux family protein; cyclopropane-fatty-acyl-phospholipid synthase 1454372 8419066 Dret_1238 Desulfohalobium retbaense DSM 5692 cyclopropane-fatty-acyl-phospholipid synthase YP_003198104.1 1452321 R 485915 CDS YP_003198105.1 258405363 8419067 complement(1454369..1455643) 1 NC_013223.1 PFAM: FAD dependent oxidoreductase; KEGG: dol:Dole_0350 amine oxidase; FAD dependent oxidoreductase 1455643 8419067 Dret_1239 Desulfohalobium retbaense DSM 5692 FAD dependent oxidoreductase YP_003198105.1 1454369 R 485915 CDS YP_003198106.1 258405364 8419068 complement(1455640..1456728) 1 NC_013223.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: xac:XAC1372 hypothetical protein; cyclopropane-fatty-acyl-phospholipid synthase 1456728 8419068 Dret_1240 Desulfohalobium retbaense DSM 5692 cyclopropane-fatty-acyl-phospholipid synthase YP_003198106.1 1455640 R 485915 CDS YP_003198107.1 258405365 8419069 complement(1456725..1457516) 1 NC_013223.1 PFAM: protein of unknown function DUF1295; KEGG: dol:Dole_0352 hypothetical protein; hypothetical protein 1457516 8419069 Dret_1241 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198107.1 1456725 R 485915 CDS YP_003198108.1 258405366 8419070 complement(1457556..1457930) 1 NC_013223.1 PFAM: Protein of unknown function DUF2237; KEGG: mfa:Mfla_0125 hypothetical protein; hypothetical protein 1457930 8419070 Dret_1242 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198108.1 1457556 R 485915 CDS YP_003198109.1 258405367 8419071 1458157..1458663 1 NC_013223.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: dvm:DvMF_2078 peptidyl-prolyl cis-trans isomerase cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 1458663 8419071 Dret_1243 Desulfohalobium retbaense DSM 5692 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_003198109.1 1458157 D 485915 CDS YP_003198110.1 258405368 8419072 1458981..1459943 1 NC_013223.1 PFAM: Patatin; KEGG: tgr:Tgr7_1058 patatin; patatin 1459943 8419072 Dret_1244 Desulfohalobium retbaense DSM 5692 patatin YP_003198110.1 1458981 D 485915 CDS YP_003198111.1 258405369 8419073 1460116..1460901 1 NC_013223.1 PFAM: dienelactone hydrolase; KEGG: hch:HCH_02826 dienelactone hydrolase; dienelactone hydrolase 1460901 8419073 Dret_1245 Desulfohalobium retbaense DSM 5692 dienelactone hydrolase YP_003198111.1 1460116 D 485915 CDS YP_003198112.1 258405370 8419074 complement(1460976..1461254) 1 NC_013223.1 hypothetical protein 1461254 8419074 Dret_1246 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198112.1 1460976 R 485915 CDS YP_003198113.1 258405371 8419075 complement(1461708..1462229) 1 NC_013223.1 PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_2313 thiol peroxidase (atypical 2-Cys peroxiredoxin); redoxin domain-containing protein 1462229 8419075 Dret_1247 Desulfohalobium retbaense DSM 5692 redoxin domain-containing protein YP_003198113.1 1461708 R 485915 CDS YP_003198114.1 258405372 8419076 1462583..1464073 1 NC_013223.1 KEGG: sfu:Sfum_2550 hydroxylamine oxidase; hydroxylamine oxidase 1464073 8419076 Dret_1248 Desulfohalobium retbaense DSM 5692 hydroxylamine oxidase YP_003198114.1 1462583 D 485915 CDS YP_003198115.1 258405373 8419077 1464306..1464812 1 NC_013223.1 hypothetical protein 1464812 8419077 Dret_1249 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198115.1 1464306 D 485915 CDS YP_003198116.1 258405374 8419078 1465036..1465554 1 NC_013223.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dat:HRM2_46890 hypothetical protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein 1465554 8419078 Dret_1250 Desulfohalobium retbaense DSM 5692 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_003198116.1 1465036 D 485915 CDS YP_003198117.1 258405375 8419079 1465665..1466162 1 NC_013223.1 KEGG: dal:Dalk_4091 hypothetical protein; hypothetical protein 1466162 8419079 Dret_1251 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198117.1 1465665 D 485915 CDS YP_003198118.1 258405376 8419080 1466528..1468531 1 NC_013223.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: csa:Csal_1111 peptidase S15; peptidase S15 1468531 8419080 Dret_1252 Desulfohalobium retbaense DSM 5692 peptidase S15 YP_003198118.1 1466528 D 485915 CDS YP_003198119.1 258405377 8419081 1468628..1469962 1 NC_013223.1 KEGG: sse:Ssed_1941 hypothetical protein; hypothetical protein 1469962 8419081 Dret_1253 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198119.1 1468628 D 485915 CDS YP_003198120.1 258405378 8419082 1470073..1470213 1 NC_013223.1 PFAM: Entericidin EcnAB; KEGG: bbr:BB0451 entericidin A anti-toxin precursor; entericidin EcnAB 1470213 8419082 Dret_1254 Desulfohalobium retbaense DSM 5692 entericidin EcnAB YP_003198120.1 1470073 D 485915 CDS YP_003198121.1 258405379 8419083 1470321..1471688 1 NC_013223.1 PFAM: metallophosphoesterase; KEGG: hha:Hhal_1710 metallophosphoesterase; metallophosphoesterase 1471688 8419083 Dret_1255 Desulfohalobium retbaense DSM 5692 metallophosphoesterase YP_003198121.1 1470321 D 485915 CDS YP_003198122.1 258405380 8419084 1471685..1475146 1 NC_013223.1 KEGG: aeh:Mlg_0827 hypothetical protein; hypothetical protein 1475146 8419084 Dret_1256 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198122.1 1471685 D 485915 CDS YP_003198123.1 258405381 8419085 1475272..1475733 1 NC_013223.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: sfu:Sfum_0940 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase, SixA 1475733 8419085 Dret_1257 Desulfohalobium retbaense DSM 5692 phosphohistidine phosphatase, SixA YP_003198123.1 1475272 D 485915 CDS YP_003198124.1 258405382 8419086 complement(1475901..1476245) 1 NC_013223.1 hypothetical protein 1476245 8419086 Dret_1258 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198124.1 1475901 R 485915 CDS YP_003198125.1 258405383 8419087 1476518..1476841 1 NC_013223.1 KEGG: sdn:Sden_2458 hypothetical protein; hypothetical protein 1476841 8419087 Dret_1259 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198125.1 1476518 D 485915 CDS YP_003198126.1 258405384 8419088 1477029..1478870 1 NC_013223.1 TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; Miro domain protein; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; KEGG: dvm:DvMF_0822 GTP-binding protein TypA; GTP-binding protein TypA 1478870 8419088 Dret_1260 Desulfohalobium retbaense DSM 5692 GTP-binding protein TypA YP_003198126.1 1477029 D 485915 CDS YP_003198127.1 258405385 8419089 complement(1478966..1480111) 1 NC_013223.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: pca:Pcar_2847 alcohol dehydrogenase, class IV; iron-containing alcohol dehydrogenase 1480111 8419089 Dret_1261 Desulfohalobium retbaense DSM 5692 iron-containing alcohol dehydrogenase YP_003198127.1 1478966 R 485915 CDS YP_003198128.1 258405386 8419090 complement(1480318..1482378) 1 NC_013223.1 TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: dol:Dole_2801 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase 1482378 8419090 Dret_1262 Desulfohalobium retbaense DSM 5692 heavy metal translocating P-type ATPase YP_003198128.1 1480318 R 485915 CDS YP_003198129.1 258405387 8419091 complement(1482485..1482835) 1 NC_013223.1 KEGG: sfu:Sfum_3594 hypothetical protein; hypothetical protein 1482835 8419091 Dret_1263 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198129.1 1482485 R 485915 CDS YP_003198130.1 258405388 8419092 complement(1482951..1483553) 1 NC_013223.1 PFAM: NADPH-dependent FMN reductase; KEGG: pca:Pcar_1104 putative NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1483553 8419092 Dret_1264 Desulfohalobium retbaense DSM 5692 NADPH-dependent FMN reductase YP_003198130.1 1482951 R 485915 CDS YP_003198131.1 258405389 8419093 1483951..1484334 1 NC_013223.1 hypothetical protein 1484334 8419093 Dret_1265 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198131.1 1483951 D 485915 CDS YP_003198132.1 258405390 8419094 complement(1484413..1485087) 1 NC_013223.1 PFAM: cytochrome c class III; KEGG: dma:DMR_02560 cytochrome c3; cytochrome c class III 1485087 8419094 Dret_1266 Desulfohalobium retbaense DSM 5692 cytochrome c class III YP_003198132.1 1484413 R 485915 CDS YP_003198133.1 258405391 8419095 1485394..1486509 1 NC_013223.1 PFAM: protein of unknown function UPF0118; KEGG: hch:HCH_01685 permease; hypothetical protein 1486509 8419095 Dret_1267 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198133.1 1485394 D 485915 CDS YP_003198134.1 258405392 8419096 1486625..1487848 1 NC_013223.1 PFAM: Metal-dependent hydrolase HDOD; EAL domain protein; KEGG: dvl:Dvul_2451 diguanylate phosphodiesterase; diguanylate phosphodiesterase 1487848 8419096 Dret_1268 Desulfohalobium retbaense DSM 5692 diguanylate phosphodiesterase YP_003198134.1 1486625 D 485915 CDS YP_003198135.1 258405393 8419097 1488199..1490301 1 NC_013223.1 KEGG: dvm:DvMF_2564 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; PAS domain containing protein; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1490301 8419097 Dret_1269 Desulfohalobium retbaense DSM 5692 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_003198135.1 1488199 D 485915 CDS YP_003198136.1 258405394 8419098 1490674..1491699 1 NC_013223.1 PFAM: Peptidase M23; KEGG: pha:PSHAa2170 peptidase M23/M37 protein; peptidase M23 1491699 8419098 Dret_1270 Desulfohalobium retbaense DSM 5692 peptidase M23 YP_003198136.1 1490674 D 485915 CDS YP_003198137.1 258405395 8419099 1491874..1492350 1 NC_013223.1 PFAM: protein of unknown function DUF583; KEGG: mxa:MXAN_7475 hypothetical protein; hypothetical protein 1492350 8419099 Dret_1271 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198137.1 1491874 D 485915 CDS YP_003198138.1 258405396 8419100 complement(1492485..1493429) 1 NC_013223.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mxa:MXAN_3334 drug/metabolite exporter family protein; hypothetical protein 1493429 8419100 Dret_1272 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198138.1 1492485 R 485915 CDS YP_003198139.1 258405397 8419101 1493532..1494461 1 NC_013223.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: hha:Hhal_1647 LysR family transcriptional regulator; LysR family transcriptional regulator 1494461 8419101 Dret_1273 Desulfohalobium retbaense DSM 5692 LysR family transcriptional regulator YP_003198139.1 1493532 D 485915 CDS YP_003198140.1 258405398 8419102 complement(1494626..1495231) 1 NC_013223.1 KEGG: hha:Hhal_1321 hypothetical protein; hypothetical protein 1495231 8419102 Dret_1274 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198140.1 1494626 R 485915 CDS YP_003198141.1 258405399 8419103 complement(1495451..1496134) 1 NC_013223.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: dat:HRM2_37520 OmpF; OmpA/MotB domain-containing protein 1496134 8419103 Dret_1275 Desulfohalobium retbaense DSM 5692 OmpA/MotB domain-containing protein YP_003198141.1 1495451 R 485915 CDS YP_003198142.1 258405400 8419104 complement(1496206..1496871) 1 NC_013223.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: dma:DMR_21020 sulfite reductase; nitrite and sulfite reductase 4Fe-4S region 1496871 8419104 Dret_1276 Desulfohalobium retbaense DSM 5692 nitrite and sulfite reductase 4Fe-4S region YP_003198142.1 1496206 R 485915 CDS YP_003198143.1 258405401 8419105 complement(1496907..1498223) 1 NC_013223.1 KEGG: dma:DMR_35340 iron-sulfur binding protein; iron-sulfur binding protein 1498223 8419105 Dret_1277 Desulfohalobium retbaense DSM 5692 iron-sulfur binding protein YP_003198143.1 1496907 R 485915 CDS YP_003198144.1 258405402 8419106 complement(1498208..1498894) 1 NC_013223.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2390 dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits-like; nitrite and sulfite reductase 4Fe-4S region 1498894 8419106 Dret_1278 Desulfohalobium retbaense DSM 5692 nitrite and sulfite reductase 4Fe-4S region YP_003198144.1 1498208 R 485915 CDS YP_003198145.1 258405403 8419107 1499143..1499826 1 NC_013223.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sfu:Sfum_3445 transcriptional regulator, Crp/Fnr family; CarD family transcriptional regulator 1499826 8419107 Dret_1279 Desulfohalobium retbaense DSM 5692 CarD family transcriptional regulator YP_003198145.1 1499143 D 485915 CDS YP_003198146.1 258405404 8419108 complement(1500050..1500799) 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dat:HRM2_40620 ferredoxin (4Fe-4S iron-sulfur cluster binding protein); 4Fe-4S ferredoxin 1500799 8419108 Dret_1280 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003198146.1 1500050 R 485915 CDS YP_003198147.1 258405405 8419109 1501283..1502677 1 NC_013223.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; KEGG: dde:Dde_3119 hypothetical protein; FAD dependent oxidoreductase 1502677 8419109 Dret_1281 Desulfohalobium retbaense DSM 5692 FAD dependent oxidoreductase YP_003198147.1 1501283 D 485915 CDS YP_003198148.1 258405406 8419110 complement(1502845..1503078) 1 NC_013223.1 KEGG: dvu:DVU1130 DNA-binding protein; DNA-binding protein 1503078 8419110 Dret_1282 Desulfohalobium retbaense DSM 5692 DNA-binding protein YP_003198148.1 1502845 R 485915 CDS YP_003198149.1 258405407 8419111 1503353..1503628 1 NC_013223.1 PFAM: acylphosphatase; KEGG: dma:DMR_44660 putative acylphosphatase; acylphosphatase 1503628 8419111 Dret_1283 Desulfohalobium retbaense DSM 5692 acylphosphatase YP_003198149.1 1503353 D 485915 CDS YP_003198150.1 258405408 8419112 1503682..1504491 1 NC_013223.1 KEGG: dma:DMR_42410 hypothetical protein; hypothetical protein 1504491 8419112 Dret_1284 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198150.1 1503682 D 485915 CDS YP_003198151.1 258405409 8419113 1504554..1505147 1 NC_013223.1 PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: dde:Dde_0441 iron-sulfur flavoprotein; NADPH-dependent FMN reductase 1505147 8419113 Dret_1285 Desulfohalobium retbaense DSM 5692 NADPH-dependent FMN reductase YP_003198151.1 1504554 D 485915 CDS YP_003198152.1 258405410 8419114 complement(1505303..1506154) 1 NC_013223.1 KEGG: sfu:Sfum_0659 apurinic endonuclease Apn1; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; apurinic endonuclease Apn1 1506154 8419114 Dret_1286 Desulfohalobium retbaense DSM 5692 apurinic endonuclease Apn1 YP_003198152.1 1505303 R 485915 CDS YP_003198153.1 258405411 8419115 complement(1506380..1509622) 1 NC_013223.1 PFAM: protein of unknown function DUF748; KEGG: tmz:Tmz1t_1893 protein of unknown function DUF748; hypothetical protein 1509622 8419115 Dret_1287 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198153.1 1506380 R 485915 CDS YP_003198154.1 258405412 8419117 complement(1510147..1511025) 1 NC_013223.1 PFAM: UspA domain protein; KEGG: dma:DMR_44380 hypothetical protein; UspA domain-containing protein 1511025 8419117 Dret_1288 Desulfohalobium retbaense DSM 5692 UspA domain-containing protein YP_003198154.1 1510147 R 485915 CDS YP_003198155.1 258405413 8419118 complement(1510994..1512172) 1 NC_013223.1 PFAM: metallophosphoesterase; KEGG: gme:Gmet_0034 metallophosphoesterase; metallophosphoesterase 1512172 8419118 Dret_1289 Desulfohalobium retbaense DSM 5692 metallophosphoesterase YP_003198155.1 1510994 R 485915 CDS YP_003198156.1 258405414 8419119 complement(1512176..1512889) 1 NC_013223.1 TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: slo:Shew_0099 pseudouridine synthase Rlu family protein; pseudouridine synthase Rlu family protein 1512889 8419119 Dret_1290 Desulfohalobium retbaense DSM 5692 pseudouridine synthase Rlu family protein YP_003198156.1 1512176 R 485915 CDS YP_003198157.1 258405415 8419120 complement(1513222..1514016) 1 NC_013223.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase 1514016 8419120 Dret_1291 Desulfohalobium retbaense DSM 5692 UDP pyrophosphate phosphatase YP_003198157.1 1513222 R 485915 CDS YP_003198158.1 258405416 8419121 complement(1514016..1514822) 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_0985 ABC transporter related protein; ABC transporter 1514822 8419121 Dret_1292 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003198158.1 1514016 R 485915 CDS YP_003198159.1 258405417 8419122 complement(1514794..1515876) 1 NC_013223.1 KEGG: gbm:Gbem_0984 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; polar amino acid ABC transporter inner membrane subunit 1515876 8419122 Dret_1293 Desulfohalobium retbaense DSM 5692 polar amino acid ABC transporter inner membrane subunit YP_003198159.1 1514794 R 485915 CDS YP_003198160.1 258405418 8419123 complement(1515904..1516695) 1 NC_013223.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: gsu:GSU0800 amino acid ABC transporter, periplasmic amino acid-binding protein; family 3 extracellular solute-binding protein 1516695 8419123 Dret_1294 Desulfohalobium retbaense DSM 5692 family 3 extracellular solute-binding protein YP_003198160.1 1515904 R 485915 CDS YP_003198161.1 258405419 8419124 1516963..1517142 1 NC_013223.1 KEGG: sfu:Sfum_0324 hypothetical protein; hypothetical protein 1517142 8419124 Dret_1295 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198161.1 1516963 D 485915 CDS YP_003198162.1 258405420 8419125 1517158..1518345 1 NC_013223.1 PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1948 permease, putative; YjgP/YjgQ family permease 1518345 8419125 Dret_1296 Desulfohalobium retbaense DSM 5692 YjgP/YjgQ family permease YP_003198162.1 1517158 D 485915 CDS YP_003198163.1 258405421 8419126 1518342..1519418 1 NC_013223.1 PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1949 permease, putative; YjgP/YjgQ family permease 1519418 8419126 Dret_1297 Desulfohalobium retbaense DSM 5692 YjgP/YjgQ family permease YP_003198163.1 1518342 D 485915 CDS YP_003198164.1 258405422 8419127 complement(1519562..1520179) 1 NC_013223.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1520179 engB 8419127 engB Desulfohalobium retbaense DSM 5692 ribosome biogenesis GTP-binding protein YsxC YP_003198164.1 1519562 R 485915 CDS YP_003198165.1 258405423 8419128 1520354..1521193 1 NC_013223.1 hypothetical protein 1521193 8419128 Dret_1299 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198165.1 1520354 D 485915 CDS YP_003198166.1 258405424 8419129 1521205..1521657 1 NC_013223.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1521657 8419129 Dret_1300 Desulfohalobium retbaense DSM 5692 3-dehydroquinate dehydratase YP_003198166.1 1521205 D 485915 CDS YP_003198167.1 258405425 8419130 1521678..1522235 1 NC_013223.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1522235 8419130 Dret_1301 Desulfohalobium retbaense DSM 5692 elongation factor P YP_003198167.1 1521678 D 485915 CDS YP_003198168.1 258405426 8419131 1522536..1524779 1 NC_013223.1 PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; KEGG: dma:DMR_23970 DNA translocase; cell division protein FtsK 1524779 8419131 Dret_1302 Desulfohalobium retbaense DSM 5692 cell division protein FtsK YP_003198168.1 1522536 D 485915 CDS YP_003198169.1 258405427 8419132 complement(1524810..1527155) 1 NC_013223.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; KEGG: dde:Dde_0555 (NiFe) hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF 1527155 8419132 Dret_1303 Desulfohalobium retbaense DSM 5692 (NiFe) hydrogenase maturation protein HypF YP_003198169.1 1524810 R 485915 CDS YP_003198170.1 258405428 8419133 complement(1527193..1528143) 1 NC_013223.1 PFAM: protein of unknown function DUF362; KEGG: dde:Dde_3247 hypothetical protein; hypothetical protein 1528143 8419133 Dret_1304 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198170.1 1527193 R 485915 CDS YP_003198171.1 258405429 8419134 complement(1528136..1529194) 1 NC_013223.1 KEGG: dal:Dalk_4628 hypothetical protein; hypothetical protein 1529194 8419134 Dret_1305 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198171.1 1528136 R 485915 CDS YP_003198172.1 258405430 8419135 complement(1529287..1531578) 1 NC_013223.1 KEGG: ppd:Ppro_3008 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein; PAS/PAC sensor hybrid histidine kinase 1531578 8419135 Dret_1306 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor hybrid histidine kinase YP_003198172.1 1529287 R 485915 CDS YP_003198173.1 258405431 8419136 complement(1531575..1532852) 1 NC_013223.1 PFAM: Extracellular ligand-binding receptor; KEGG: dma:DMR_02650 hypothetical protein; extracellular ligand-binding receptor 1532852 8419136 Dret_1307 Desulfohalobium retbaense DSM 5692 extracellular ligand-binding receptor YP_003198173.1 1531575 R 485915 CDS YP_003198174.1 258405432 8419137 complement(1532853..1533668) 1 NC_013223.1 PFAM: Rhodanese domain protein; Rubrerythrin; SMART: Rhodanese domain protein; KEGG: dde:Dde_3248 rhodanese-like protein; rhodanese domain-containing protein 1533668 8419137 Dret_1308 Desulfohalobium retbaense DSM 5692 rhodanese domain-containing protein YP_003198174.1 1532853 R 485915 CDS YP_003198175.1 258405433 8419138 complement(1533734..1534429) 1 NC_013223.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sfu:Sfum_0240 methyltransferase type 11; type 11 methyltransferase 1534429 8419138 Dret_1309 Desulfohalobium retbaense DSM 5692 type 11 methyltransferase YP_003198175.1 1533734 R 485915 CDS YP_003198176.1 258405434 8419139 complement(1534431..1536278) 1 NC_013223.1 PFAM: protein of unknown function DUF255; KEGG: dvm:DvMF_2759 protein of unknown function DUF255; hypothetical protein 1536278 8419139 Dret_1310 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198176.1 1534431 R 485915 CDS YP_003198177.1 258405435 8419140 1536393..1537301 1 NC_013223.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: gsu:GSU3407 hypothetical protein; hypothetical protein 1537301 8419140 Dret_1311 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198177.1 1536393 D 485915 CDS YP_003198178.1 258405436 8419141 complement(1537815..1538918) 1 NC_013223.1 PFAM: deoxyhypusine synthase; KEGG: scl:sce5982 hypothetical protein; deoxyhypusine synthase 1538918 8419141 Dret_1312 Desulfohalobium retbaense DSM 5692 deoxyhypusine synthase YP_003198178.1 1537815 R 485915 CDS YP_003198179.1 258405437 8419142 complement(1538962..1539843) 1 NC_013223.1 TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: dal:Dalk_3765 agmatinase; agmatinase 1539843 8419142 Dret_1313 Desulfohalobium retbaense DSM 5692 agmatinase YP_003198179.1 1538962 R 485915 CDS YP_003198180.1 258405438 8419143 complement(1540171..1540716) 1 NC_013223.1 PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex; pyruvoyl-dependent arginine decarboxylase 1540716 8419143 Dret_1314 Desulfohalobium retbaense DSM 5692 pyruvoyl-dependent arginine decarboxylase YP_003198180.1 1540171 R 485915 CDS YP_003198181.1 258405439 8419144 complement(1540730..1541386) 1 NC_013223.1 PFAM: Sporulation domain protein; KEGG: dde:Dde_2296 hypothetical protein; sporulation domain-containing protein 1541386 8419144 Dret_1315 Desulfohalobium retbaense DSM 5692 sporulation domain-containing protein YP_003198181.1 1540730 R 485915 CDS YP_003198182.1 258405440 8419145 complement(1541398..1543053) 1 NC_013223.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1543053 argS 8419145 argS Desulfohalobium retbaense DSM 5692 arginyl-tRNA synthetase YP_003198182.1 1541398 R 485915 CDS YP_003198183.1 258405441 8419146 complement(1543123..1544079) 1 NC_013223.1 PFAM: Acyl transferase; KEGG: dvl:Dvul_1813 malonyl CoA-acyl carrier protein transacylase; acyl transferase 1544079 8419146 Dret_1317 Desulfohalobium retbaense DSM 5692 acyl transferase YP_003198183.1 1543123 R 485915 CDS YP_003198184.1 258405442 8419147 1544291..1544950 1 NC_013223.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: dde:Dde_2293 methyltransferase GidB; methyltransferase GidB 1544950 8419147 Dret_1318 Desulfohalobium retbaense DSM 5692 methyltransferase GidB YP_003198184.1 1544291 D 485915 CDS YP_003198185.1 258405443 8419148 1545038..1545250 1 NC_013223.1 KEGG: dde:Dde_2330 hypothetical protein; hypothetical protein 1545250 8419148 Dret_1319 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198185.1 1545038 D 485915 CDS YP_003198186.1 258405444 8419149 1545300..1546247 1 NC_013223.1 PFAM: Methyltransferase type 11; KEGG: dde:Dde_2330 hypothetical protein; type 11 methyltransferase 1546247 8419149 Dret_1320 Desulfohalobium retbaense DSM 5692 type 11 methyltransferase YP_003198186.1 1545300 D 485915 CDS YP_003198187.1 258405445 8419150 complement(1546315..1547724) 1 NC_013223.1 TIGRFAM: deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: gsu:GSU2829 deoxyribodipyrimidine photolyase, putative; deoxyribodipyrimidine photolyase 1547724 8419150 Dret_1321 Desulfohalobium retbaense DSM 5692 deoxyribodipyrimidine photolyase YP_003198187.1 1546315 R 485915 CDS YP_003198188.1 258405446 8419151 complement(1547775..1549316) 1 NC_013223.1 PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: dvl:Dvul_2879 NAD-dependent epimerase/dehydratase; NmrA family protein 1549316 8419151 Dret_1322 Desulfohalobium retbaense DSM 5692 NmrA family protein YP_003198188.1 1547775 R 485915 CDS YP_003198189.1 258405447 8419152 complement(1549309..1550280) 1 NC_013223.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: dal:Dalk_2348 protein of unknown function DUF523; hypothetical protein 1550280 8419152 Dret_1323 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198189.1 1549309 R 485915 CDS YP_003198190.1 258405448 8419153 complement(1550348..1550842) 1 NC_013223.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: dat:HRM2_43000 hypothetical protein; pyridoxamine 5'-phosphate oxidase-related FMN- binding 1550842 8419153 Dret_1324 Desulfohalobium retbaense DSM 5692 pyridoxamine 5'-phosphate oxidase-related FMN- binding YP_003198190.1 1550348 R 485915 CDS YP_003198191.1 258405449 8419154 1551021..1551929 1 NC_013223.1 PFAM: domain of unknown function DUF1731; NAD- dependent epimerase/dehydratase; KEGG: dal:Dalk_2593 domain of unknown function DUF1731; hypothetical protein 1551929 8419154 Dret_1325 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198191.1 1551021 D 485915 CDS YP_003198192.1 258405450 8419155 complement(1552015..1552806) 1 NC_013223.1 PFAM: glutamine cyclotransferase; KEGG: dma:DMR_25530 glutamine cyclotransferase family protein; glutamine cyclotransferase 1552806 8419155 Dret_1326 Desulfohalobium retbaense DSM 5692 glutamine cyclotransferase YP_003198192.1 1552015 R 485915 CDS YP_003198193.1 258405451 8419156 1552862..1553398 1 NC_013223.1 hypothetical protein 1553398 8419156 Dret_1327 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198193.1 1552862 D 485915 CDS YP_003198194.1 258405452 8419157 complement(1553561..1554322) 1 NC_013223.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: pca:Pcar_0774 FKBP-type peptidyl-prolyl cis- trans isomerase; Peptidylprolyl isomerase 1554322 8419157 Dret_1328 Desulfohalobium retbaense DSM 5692 Peptidylprolyl isomerase YP_003198194.1 1553561 R 485915 CDS YP_003198195.1 258405453 8419158 1554593..1555546 1 NC_013223.1 PFAM: Rhomboid family protein; KEGG: geo:Geob_1665 rhomboid family protein; rhomboid family protein 1555546 8419158 Dret_1329 Desulfohalobium retbaense DSM 5692 rhomboid family protein YP_003198195.1 1554593 D 485915 CDS YP_003198196.1 258405454 8419159 1555666..1557306 1 NC_013223.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 1557306 8419159 Dret_1330 Desulfohalobium retbaense DSM 5692 phosphoglucomutase YP_003198196.1 1555666 D 485915 CDS YP_003198197.1 258405455 8419160 1557338..1558081 1 NC_013223.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: dat:HRM2_39870 SmuG; uracil-DNA glycosylase 1558081 8419160 Dret_1331 Desulfohalobium retbaense DSM 5692 uracil-DNA glycosylase YP_003198197.1 1557338 D 485915 CDS YP_003198198.1 258405456 8419161 complement(1558097..1558897) 1 NC_013223.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: dvl:Dvul_1399 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1558897 8419161 Dret_1332 Desulfohalobium retbaense DSM 5692 phospholipid/glycerol acyltransferase YP_003198198.1 1558097 R 485915 CDS YP_003198199.1 258405457 8419162 1559117..1559827 1 NC_013223.1 PFAM: SNARE associated Golgi protein; KEGG: nmu:Nmul_A1523 phospholipase D/transphosphatidylase; hypothetical protein 1559827 8419162 Dret_1333 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198199.1 1559117 D 485915 CDS YP_003198200.1 258405458 8419163 1559829..1560413 1 NC_013223.1 KEGG: dvl:Dvul_2210 putative lipoprotein; hypothetical protein 1560413 8419163 Dret_1334 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198200.1 1559829 D 485915 CDS YP_003198201.1 258405459 8419164 1560413..1561402 1 NC_013223.1 PFAM: aldo/keto reductase; KEGG: bgl:bglu_1g30170 aldo/keto reductase; aldo/keto reductase 1561402 8419164 Dret_1335 Desulfohalobium retbaense DSM 5692 aldo/keto reductase YP_003198201.1 1560413 D 485915 CDS YP_003198202.1 258405460 8419165 complement(1561491..1562837) 1 NC_013223.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: dma:DMR_34990 glutathione reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1562837 8419165 Dret_1336 Desulfohalobium retbaense DSM 5692 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003198202.1 1561491 R 485915 CDS YP_003198203.1 258405461 8419166 complement(1562941..1564197) 1 NC_013223.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dvm:DvMF_0353 diaminopimelate decarboxylase; diaminopimelate decarboxylase 1564197 8419166 Dret_1337 Desulfohalobium retbaense DSM 5692 diaminopimelate decarboxylase YP_003198203.1 1562941 R 485915 CDS YP_003198204.1 258405462 8419167 complement(1564272..1564730) 1 NC_013223.1 KEGG: dvl:Dvul_1438 putative lipoprotein; putative lipoprotein 1564730 8419167 Dret_1338 Desulfohalobium retbaense DSM 5692 putative lipoprotein YP_003198204.1 1564272 R 485915 CDS YP_003198205.1 258405463 8419168 complement(1564679..1567369) 1 NC_013223.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1567369 8419168 Dret_1339 Desulfohalobium retbaense DSM 5692 DNA mismatch repair protein MutS YP_003198205.1 1564679 R 485915 CDS YP_003198206.1 258405464 8419169 complement(1567493..1568602) 1 NC_013223.1 KEGG: dvl:Dvul_1436 tetratricopeptide domain- containing protein; hypothetical protein 1568602 8419169 Dret_1340 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198206.1 1567493 R 485915 CDS YP_003198207.1 258405465 8419170 complement(1568663..1569088) 1 NC_013223.1 KEGG: dde:Dde_1974 hypothetical protein; hypothetical protein 1569088 8419170 Dret_1341 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198207.1 1568663 R 485915 CDS YP_003198208.1 258405466 8419171 complement(1569104..1569595) 1 NC_013223.1 PFAM: histidine triad (HIT) protein; KEGG: dde:Dde_1973 HIT family protein; histidine triad (HIT) protein 1569595 8419171 Dret_1342 Desulfohalobium retbaense DSM 5692 histidine triad (HIT) protein YP_003198208.1 1569104 R 485915 CDS YP_003198209.1 258405467 8419172 complement(1569748..1570488) 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dal:Dalk_1257 ABC transporter related; ABC transporter 1570488 8419172 Dret_1343 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003198209.1 1569748 R 485915 CDS YP_003198210.1 258405468 8419173 complement(1570478..1571281) 1 NC_013223.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_0861 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 1571281 8419173 Dret_1344 Desulfohalobium retbaense DSM 5692 polar amino acid ABC transporter inner membrane subunit YP_003198210.1 1570478 R 485915 CDS YP_003198211.1 258405469 8419174 complement(1571378..1572112) 1 NC_013223.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dvl:Dvul_1824 extracellular solute-binding protein; family 3 extracellular solute-binding protein 1572112 8419174 Dret_1345 Desulfohalobium retbaense DSM 5692 family 3 extracellular solute-binding protein YP_003198211.1 1571378 R 485915 CDS YP_003198212.1 258405470 8419175 complement(1572411..1575119) 1 NC_013223.1 PFAM: Polynucleotide adenylyltransferase region; phosphoesterase DHHA1; CBS domain containing protein; phosphoesterase RecJ domain protein; SMART: CBS domain containing protein; KEGG: dma:DMR_22030 nucleotidyltransferase; cyclic nucleotide-binding protein 1575119 8419175 Dret_1346 Desulfohalobium retbaense DSM 5692 cyclic nucleotide-binding protein YP_003198212.1 1572411 R 485915 CDS YP_003198213.1 258405471 8419176 complement(1575116..1576036) 1 NC_013223.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dvl:Dvul_1432 tyrosine recombinase XerD; tyrosine recombinase XerD 1576036 8419176 Dret_1347 Desulfohalobium retbaense DSM 5692 tyrosine recombinase XerD YP_003198213.1 1575116 R 485915 CDS YP_003198214.1 258405472 8419177 1576277..1576801 1 NC_013223.1 KEGG: sat:SYN_02163 7,8-dihydro-6- hydroxymethylpterin-pyrophosphokinase (HppK); TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropter idinepyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1576801 8419177 Dret_1348 Desulfohalobium retbaense DSM 5692 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_003198214.1 1576277 D 485915 CDS YP_003198215.1 258405473 8419178 1576832..1577098 1 NC_013223.1 SMART: TRASH domain protein; KEGG: dma:DMR_21990 hypothetical protein; TRASH domain-containing protein 1577098 8419178 Dret_1349 Desulfohalobium retbaense DSM 5692 TRASH domain-containing protein YP_003198215.1 1576832 D 485915 CDS YP_003198216.1 258405474 8419179 1577101..1577754 1 NC_013223.1 KEGG: dde:Dde_1070 putative translaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase 1577754 8419179 Dret_1350 Desulfohalobium retbaense DSM 5692 transaldolase YP_003198216.1 1577101 D 485915 CDS YP_003198217.1 258405475 8419180 1577999..1579222 1 NC_013223.1 catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis; L,L-diaminopimelate aminotransferase 1579222 8419180 Dret_1351 Desulfohalobium retbaense DSM 5692 L,L-diaminopimelate aminotransferase YP_003198217.1 1577999 D 485915 CDS YP_003198218.1 258405476 8419181 complement(1579219..1579740) 1 NC_013223.1 hypothetical protein 1579740 8419181 Dret_1352 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198218.1 1579219 R 485915 CDS YP_003198219.1 258405477 8419182 complement(1579936..1580535) 1 NC_013223.1 hypothetical protein 1580535 8419182 Dret_1353 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198219.1 1579936 R 485915 CDS YP_003198220.1 258405478 8419183 1580903..1583068 1 NC_013223.1 KEGG: sde:Sde_2960 cellulose binding, type IV; hypothetical protein 1583068 8419183 Dret_1354 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198220.1 1580903 D 485915 CDS YP_003198221.1 258405479 8419184 complement(1583267..1583983) 1 NC_013223.1 PFAM: MgtC/SapB transporter; KEGG: sfu:Sfum_3054 MgtC/SapB transporter; MgtC/SapB transporter 1583983 8419184 Dret_1355 Desulfohalobium retbaense DSM 5692 MgtC/SapB transporter YP_003198221.1 1583267 R 485915 CDS YP_003198222.1 258405480 8419185 1584339..1584629 1 NC_013223.1 hypothetical protein 1584629 8419185 Dret_1356 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198222.1 1584339 D 485915 CDS YP_003198223.1 258405481 8419186 complement(1584756..1585787) 1 NC_013223.1 KEGG: dvl:Dvul_2803 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; peptide ABC transporter ATPase 1585787 8419186 Dret_1357 Desulfohalobium retbaense DSM 5692 peptide ABC transporter ATPase YP_003198223.1 1584756 R 485915 CDS YP_003198224.1 258405482 8419187 complement(1585797..1586765) 1 NC_013223.1 KEGG: dat:HRM2_49230 OppD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; peptide ABC transporter ATPase 1586765 8419187 Dret_1358 Desulfohalobium retbaense DSM 5692 peptide ABC transporter ATPase YP_003198224.1 1585797 R 485915 CDS YP_003198225.1 258405483 8419188 complement(1586768..1587694) 1 NC_013223.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_1532 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1587694 8419188 Dret_1359 Desulfohalobium retbaense DSM 5692 binding-protein-dependent transport system inner membrane protein YP_003198225.1 1586768 R 485915 CDS YP_003198226.1 258405484 8419189 complement(1587691..1588665) 1 NC_013223.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_1533 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1588665 8419189 Dret_1360 Desulfohalobium retbaense DSM 5692 binding-protein-dependent transport system inner membrane protein YP_003198226.1 1587691 R 485915 CDS YP_003198227.1 258405485 8419190 complement(1588922..1590472) 1 NC_013223.1 PFAM: extracellular solute-binding protein family 5; KEGG: dal:Dalk_1534 extracellular solute-binding protein family 5; family 5 extracellular solute-binding protein 1590472 8419190 Dret_1361 Desulfohalobium retbaense DSM 5692 family 5 extracellular solute-binding protein YP_003198227.1 1588922 R 485915 CDS YP_003198228.1 258405486 8419191 1590793..1591038 1 NC_013223.1 KEGG: dma:DMR_30610 hypothetical protein; hypothetical protein 1591038 8419191 Dret_1362 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198228.1 1590793 D 485915 CDS YP_003198229.1 258405487 8419192 1591043..1591942 1 NC_013223.1 PFAM: PP-loop domain protein; KEGG: dvm:DvMF_2330 PP-loop domain protein; PP-loop domain-containing protein 1591942 8419192 Dret_1363 Desulfohalobium retbaense DSM 5692 PP-loop domain-containing protein YP_003198229.1 1591043 D 485915 CDS YP_003198230.1 258405488 8419193 complement(1592076..1592825) 1 NC_013223.1 KEGG: ank:AnaeK_0840 leucyl/phenylalanyl- tRNA/protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase 1592825 8419193 Dret_1364 Desulfohalobium retbaense DSM 5692 leucyl/phenylalanyl-tRNA/protein transferase YP_003198230.1 1592076 R 485915 CDS YP_003198231.1 258405489 8419194 complement(1592831..1592944) 1 NC_013223.1 hypothetical protein 1592944 8419194 Dret_1365 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198231.1 1592831 R 485915 CDS YP_003198232.1 258405490 8419195 complement(1593073..1595316) 1 NC_013223.1 KEGG: dma:DMR_23720 ATP-dependent Clp protease ATP- binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 1595316 8419195 Dret_1366 Desulfohalobium retbaense DSM 5692 ATP-dependent Clp protease ATP-binding protein ClpA YP_003198232.1 1593073 R 485915 CDS YP_003198233.1 258405491 8419196 complement(1595319..1595630) 1 NC_013223.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: dma:DMR_23730 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 1595630 8419196 Dret_1367 Desulfohalobium retbaense DSM 5692 ATP-dependent Clp protease adaptor protein ClpS YP_003198233.1 1595319 R 485915 CDS YP_003198234.1 258405492 8419197 complement(1595627..1596241) 1 NC_013223.1 PFAM: adenylate cyclase; KEGG: dvm:DvMF_0460 adenylate cyclase; adenylate cyclase 1596241 8419197 Dret_1368 Desulfohalobium retbaense DSM 5692 adenylate cyclase YP_003198234.1 1595627 R 485915 CDS YP_003198235.1 258405493 8419198 complement(1596873..1597478) 1 NC_013223.1 KEGG: amc:MADE_01157 hypothetical protein; hypothetical protein 1597478 8419198 Dret_1369 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198235.1 1596873 R 485915 CDS YP_003198236.1 258405494 8419199 1597877..1599187 1 NC_013223.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1599187 hisD 8419199 hisD Desulfohalobium retbaense DSM 5692 histidinol dehydrogenase YP_003198236.1 1597877 D 485915 CDS YP_003198237.1 258405495 8419200 1599361..1600260 1 NC_013223.1 KEGG: dvl:Dvul_1353 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 1600260 8419200 Dret_1371 Desulfohalobium retbaense DSM 5692 nicotinate-nucleotide pyrophosphorylase YP_003198237.1 1599361 D 485915 CDS YP_003198238.1 258405496 8419201 1600619..1601659 1 NC_013223.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1601659 8419201 Dret_1372 Desulfohalobium retbaense DSM 5692 quinolinate synthetase YP_003198238.1 1600619 D 485915 CDS YP_003198239.1 258405497 8419202 1601679..1603262 1 NC_013223.1 TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: dma:DMR_18190 L-aspartate oxidase; L-aspartate oxidase 1603262 8419202 Dret_1373 Desulfohalobium retbaense DSM 5692 L-aspartate oxidase YP_003198239.1 1601679 D 485915 CDS YP_003198240.1 258405498 8419203 complement(1603594..1604169) 1 NC_013223.1 hypothetical protein 1604169 8419203 Dret_1374 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198240.1 1603594 R 485915 CDS YP_003198241.1 258405499 8419204 1604695..1605825 1 NC_013223.1 KEGG: dma:DMR_46020 hypothetical protein; hypothetical protein 1605825 8419204 Dret_1375 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198241.1 1604695 D 485915 CDS YP_003198242.1 258405500 8419205 1605789..1607423 1 NC_013223.1 PFAM: ferredoxin-dependent glutamate synthase; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_1724 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 1607423 8419205 Dret_1376 Desulfohalobium retbaense DSM 5692 ferredoxin-dependent glutamate synthase YP_003198242.1 1605789 D 485915 CDS YP_003198243.1 258405501 8419206 1607492..1609873 1 NC_013223.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase alpha subunit domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1609873 8419206 Dret_1377 Desulfohalobium retbaense DSM 5692 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003198243.1 1607492 D 485915 CDS YP_003198244.1 258405502 8419208 complement(1611858..1613336) 1 NC_013223.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 1613336 panF 8419208 panF Desulfohalobium retbaense DSM 5692 sodium/panthothenate symporter YP_003198244.1 1611858 R 485915 CDS YP_003198245.1 258405503 8419209 complement(1613339..1613641) 1 NC_013223.1 KEGG: dde:Dde_3322 membrane protein-like; hypothetical protein 1613641 8419209 Dret_1380 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198245.1 1613339 R 485915 CDS YP_003198246.1 258405504 8419210 complement(1613833..1614522) 1 NC_013223.1 PFAM: protein of unknown function DUF45; KEGG: sfu:Sfum_1535 protein of unknown function DUF45; hypothetical protein 1614522 8419210 Dret_1381 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198246.1 1613833 R 485915 CDS YP_003198247.1 258405505 8419211 1614853..1615659 1 NC_013223.1 KEGG: dat:HRM2_03970 MltB; protein MltB 1615659 8419211 Dret_1382 Desulfohalobium retbaense DSM 5692 protein MltB YP_003198247.1 1614853 D 485915 CDS YP_003198248.1 258405506 8419212 complement(1615634..1616515) 1 NC_013223.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: dma:DMR_17130 serine acetyltransferase; Serine O-acetyltransferase 1616515 8419212 Dret_1383 Desulfohalobium retbaense DSM 5692 Serine O-acetyltransferase YP_003198248.1 1615634 R 485915 CDS YP_003198249.1 258405507 8419213 1616734..1618425 1 NC_013223.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1618425 8419213 Dret_1384 Desulfohalobium retbaense DSM 5692 glutaminyl-tRNA synthetase YP_003198249.1 1616734 D 485915 CDS YP_003198250.1 258405508 8419214 complement(1618746..1619681) 1 NC_013223.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dma:DMR_17120 cysteine synthase A; cysteine synthase 1619681 8419214 Dret_1385 Desulfohalobium retbaense DSM 5692 cysteine synthase YP_003198250.1 1618746 R 485915 CDS YP_003198251.1 258405509 8419215 complement(1619781..1620737) 1 NC_013223.1 hypothetical protein 1620737 8419215 Dret_1386 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198251.1 1619781 R 485915 CDS YP_003198252.1 258405510 8419216 complement(1620984..1621697) 1 NC_013223.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1621697 rnc 8419216 rnc Desulfohalobium retbaense DSM 5692 ribonuclease III YP_003198252.1 1620984 R 485915 CDS YP_003198253.1 258405511 8419217 1621987..1622676 1 NC_013223.1 PFAM: shikimate kinase; KEGG: dma:DMR_27440 shikimate kinase II; shikimate kinase 1622676 8419217 Dret_1388 Desulfohalobium retbaense DSM 5692 shikimate kinase YP_003198253.1 1621987 D 485915 CDS YP_003198254.1 258405512 8419218 1622669..1623472 1 NC_013223.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dvl:Dvul_1712 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1623472 8419218 Dret_1389 Desulfohalobium retbaense DSM 5692 metal dependent phosphohydrolase YP_003198254.1 1622669 D 485915 CDS YP_003198255.1 258405513 8419219 complement(1623784..1624887) 1 NC_013223.1 TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP- binding protein HSR1-related; KEGG: dde:Dde_1698 GTP-dependent nucleic acid- binding protein EngD; GTP-binding protein YchF 1624887 8419219 Dret_1390 Desulfohalobium retbaense DSM 5692 GTP-binding protein YchF YP_003198255.1 1623784 R 485915 CDS YP_003198256.1 258405514 8419220 complement(1625421..1625819) 1 NC_013223.1 PFAM: DnaJ homologue, subfamily C, member 28; KEGG: dvm:DvMF_2043 hypothetical protein; DnaJ-like protein 1625819 8419220 Dret_1391 Desulfohalobium retbaense DSM 5692 DnaJ-like protein YP_003198256.1 1625421 R 485915 CDS YP_003198257.1 258405515 8419221 complement(1625880..1626224) 1 NC_013223.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dma:DMR_13690 hypothetical protein; anti-sigma-factor antagonist 1626224 8419221 Dret_1392 Desulfohalobium retbaense DSM 5692 anti-sigma-factor antagonist YP_003198257.1 1625880 R 485915 CDS YP_003198258.1 258405516 8419222 complement(1626161..1626640) 1 NC_013223.1 KEGG: dma:DMR_13680 hypothetical protein; putative anti-sigma regulatory factor 1626640 8419222 Dret_1393 Desulfohalobium retbaense DSM 5692 putative anti-sigma regulatory factor YP_003198258.1 1626161 R 485915 CDS YP_003198259.1 258405517 8419223 complement(1626802..1627269) 1 NC_013223.1 TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: dvl:Dvul_1627 D-tyrosyl-tRNA(Tyr) deacylase; D-tyrosyl-tRNA(Tyr) deacylase 1627269 8419223 Dret_1394 Desulfohalobium retbaense DSM 5692 D-tyrosyl-tRNA(Tyr) deacylase YP_003198259.1 1626802 R 485915 CDS YP_003198260.1 258405518 8419224 complement(1627269..1627661) 1 NC_013223.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: dvl:Dvul_1716 putative 6-pyruvoyl tetrahydropterin synthase; 6-pyruvoyl-tetrahydropterin synthase 1627661 8419224 Dret_1395 Desulfohalobium retbaense DSM 5692 6-pyruvoyl-tetrahydropterin synthase YP_003198260.1 1627269 R 485915 CDS YP_003198261.1 258405519 8419225 complement(1627732..1631211) 1 NC_013223.1 KEGG: dvm:DvMF_0130 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 1631211 8419225 Dret_1396 Desulfohalobium retbaense DSM 5692 DNA polymerase III subunit alpha YP_003198261.1 1627732 R 485915 CDS YP_003198262.1 258405520 8419226 complement(1631429..1632430) 1 NC_013223.1 KEGG: dvm:DvMF_0012 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 1632430 8419226 Dret_1397 Desulfohalobium retbaense DSM 5692 glyceraldehyde-3-phosphate dehydrogenase, type I YP_003198262.1 1631429 R 485915 CDS YP_003198263.1 258405521 8419227 complement(1632571..1633494) 1 NC_013223.1 KEGG: dde:Dde_2341 fructose-bisphosphate aldolase; TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; fructose-1,6-bisphosphate aldolase 1633494 8419227 Dret_1398 Desulfohalobium retbaense DSM 5692 fructose-1,6-bisphosphate aldolase YP_003198263.1 1632571 R 485915 CDS YP_003198264.1 258405522 8419228 complement(1633801..1634580) 1 NC_013223.1 KEGG: dma:DMR_39830 5'-nucleotidase SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE 1634580 8419228 Dret_1399 Desulfohalobium retbaense DSM 5692 stationary-phase survival protein SurE YP_003198264.1 1633801 R 485915 CDS YP_003198265.1 258405523 8419229 complement(1634565..1635149) 1 NC_013223.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: dvl:Dvul_1221 pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate/ketoisovalerate oxidoreductase 1635149 8419229 Dret_1400 Desulfohalobium retbaense DSM 5692 pyruvate/ketoisovalerate oxidoreductase YP_003198265.1 1634565 R 485915 CDS YP_003198266.1 258405524 8419230 complement(1635146..1635979) 1 NC_013223.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 1635979 8419230 Dret_1401 Desulfohalobium retbaense DSM 5692 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_003198266.1 1635146 R 485915 CDS YP_003198267.1 258405525 8419231 complement(1636203..1637351) 1 NC_013223.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dvm:DvMF_0603 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha 1637351 8419231 Dret_1402 Desulfohalobium retbaense DSM 5692 2-oxoglutarate ferredoxin oxidoreductase subunit alpha YP_003198267.1 1636203 R 485915 CDS YP_003198268.1 258405526 8419232 complement(1637511..1637789) 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_1224 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 1637789 8419232 Dret_1403 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003198268.1 1637511 R 485915 CDS YP_003198269.1 258405527 8419233 1637872..1638903 1 NC_013223.1 KEGG: dma:DMR_39820 putative nucleic acid-binding protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 1638903 8419233 Dret_1404 Desulfohalobium retbaense DSM 5692 metal dependent phosphohydrolase YP_003198269.1 1637872 D 485915 CDS YP_003198270.1 258405528 8419234 1638879..1639526 1 NC_013223.1 KEGG: dde:Dde_2338 thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase 1639526 8419234 Dret_1405 Desulfohalobium retbaense DSM 5692 thymidylate kinase YP_003198270.1 1638879 D 485915 CDS YP_003198271.1 258405529 8419235 1639708..1639962 1 NC_013223.1 PFAM: glutaredoxin; KEGG: dma:DMR_39790 glutaredoxin; glutaredoxin 1639962 8419235 Dret_1406 Desulfohalobium retbaense DSM 5692 glutaredoxin YP_003198271.1 1639708 D 485915 CDS YP_003198272.1 258405530 8419236 1639959..1640318 1 NC_013223.1 KEGG: sfu:Sfum_0349 hypothetical protein; hypothetical protein 1640318 8419236 Dret_1407 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198272.1 1639959 D 485915 CDS YP_003198273.1 258405531 8419237 1640430..1640651 1 NC_013223.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: dvm:DvMF_0997 nitrogen-fixing NifU domain protein; nitrogen-fixing NifU domain-containing protein 1640651 8419237 Dret_1408 Desulfohalobium retbaense DSM 5692 nitrogen-fixing NifU domain-containing protein YP_003198273.1 1640430 D 485915 CDS YP_003198274.1 258405532 8419238 1641040..1642431 1 NC_013223.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: dma:DMR_39860 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase 1642431 8419238 Dret_1409 Desulfohalobium retbaense DSM 5692 glutamyl-tRNA synthetase YP_003198274.1 1641040 D 485915 CDS YP_003198275.1 258405533 8419239 complement(1642582..1642779) 1 NC_013223.1 TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: dde:Dde_2425 50S ribosomal protein L28; 50S ribosomal protein L28 1642779 8419239 Dret_1410 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L28 YP_003198275.1 1642582 R 485915 CDS YP_003198276.1 258405534 8419240 1643014..1643547 1 NC_013223.1 PFAM: protein of unknown function DUF177; KEGG: dvl:Dvul_1847 hypothetical protein; hypothetical protein 1643547 8419240 Dret_1411 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198276.1 1643014 D 485915 CDS YP_003198277.1 258405535 8419241 1643614..1643802 1 NC_013223.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: dma:DMR_39930 50S ribosomal protein L32; 50S ribosomal protein L32 1643802 8419241 Dret_1412 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L32 YP_003198277.1 1643614 D 485915 CDS YP_003198278.1 258405536 8419242 1643789..1644877 1 NC_013223.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1644877 8419242 Dret_1413 Desulfohalobium retbaense DSM 5692 putative glycerol-3-phosphate acyltransferase PlsX YP_003198278.1 1643789 D 485915 CDS YP_003198279.1 258405537 8419243 1645047..1646048 1 NC_013223.1 KEGG: dma:DMR_39950 3-oxoacyl-[acyl-carrier- protein] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III; 3-oxoacyl-ACP synthase 1646048 8419243 Dret_1414 Desulfohalobium retbaense DSM 5692 3-oxoacyl-ACP synthase YP_003198279.1 1645047 D 485915 CDS YP_003198280.1 258405538 8419244 1646202..1646948 1 NC_013223.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dma:DMR_39960 3-oxoacyl-[acyl-carrier- protein] reductase; 3-oxoacyl-ACP reductase 1646948 8419244 Dret_1415 Desulfohalobium retbaense DSM 5692 3-oxoacyl-ACP reductase YP_003198280.1 1646202 D 485915 CDS YP_003198281.1 258405539 8419245 1647203..1647433 1 NC_013223.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: dvl:Dvul_1852 acyl carrier protein; acyl carrier protein 1647433 8419245 Dret_1416 Desulfohalobium retbaense DSM 5692 acyl carrier protein YP_003198281.1 1647203 D 485915 CDS YP_003198282.1 258405540 8419246 1647697..1648944 1 NC_013223.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: dvm:DvMF_3098 3-oxoacyl-(acyl-carrier- protein) synthase 2; 3-oxoacyl-ACP synthase 1648944 8419246 Dret_1417 Desulfohalobium retbaense DSM 5692 3-oxoacyl-ACP synthase YP_003198282.1 1647697 D 485915 CDS YP_003198283.1 258405541 8419247 1648955..1650217 1 NC_013223.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1650217 glyA 8419247 glyA Desulfohalobium retbaense DSM 5692 serine hydroxymethyltransferase YP_003198283.1 1648955 D 485915 CDS YP_003198284.1 258405542 8419248 1650214..1650675 1 NC_013223.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dma:DMR_05630 putative dCMP deaminase; zinc-binding CMP/dCMP deaminase 1650675 8419248 Dret_1419 Desulfohalobium retbaense DSM 5692 zinc-binding CMP/dCMP deaminase YP_003198284.1 1650214 D 485915 CDS YP_003198285.1 258405543 8419249 1650686..1651840 1 NC_013223.1 KEGG: dde:Dde_2434 5-amino-6-(5- phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; riboflavin biosynthesis protein RibD 1651840 8419249 Dret_1420 Desulfohalobium retbaense DSM 5692 riboflavin biosynthesis protein RibD YP_003198285.1 1650686 D 485915 CDS YP_003198286.1 258405544 8419250 1651859..1652521 1 NC_013223.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1652521 8419250 Dret_1421 Desulfohalobium retbaense DSM 5692 riboflavin synthase subunit alpha YP_003198286.1 1651859 D 485915 CDS YP_003198287.1 258405545 8419251 1652631..1653848 1 NC_013223.1 TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2- butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: dde:Dde_2436 GTP cyclohydrolase II / 3,4- dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II 1653848 8419251 Dret_1422 Desulfohalobium retbaense DSM 5692 GTP cyclohydrolase II YP_003198287.1 1652631 D 485915 CDS YP_003198288.1 258405546 8419252 1653987..1654457 1 NC_013223.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1654457 ribH 8419252 ribH Desulfohalobium retbaense DSM 5692 6,7-dimethyl-8-ribityllumazine synthase YP_003198288.1 1653987 D 485915 CDS YP_003198289.1 258405547 8419253 1654465..1654908 1 NC_013223.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: dde:Dde_2438 transcription antitermination factor NusB; NusB antitermination factor 1654908 8419253 Dret_1424 Desulfohalobium retbaense DSM 5692 NusB antitermination factor YP_003198289.1 1654465 D 485915 CDS YP_003198290.1 258405548 8419254 1654989..1657484 1 NC_013223.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: dde:Dde_2439 leucyl-tRNA synthetase; leucyl-tRNA synthetase 1657484 8419254 Dret_1425 Desulfohalobium retbaense DSM 5692 leucyl-tRNA synthetase YP_003198290.1 1654989 D 485915 CDS YP_003198291.1 258405549 8419255 1657468..1657977 1 NC_013223.1 KEGG: dvm:DvMF_3089 putative lipoprotein; putative lipoprotein 1657977 8419255 Dret_1426 Desulfohalobium retbaense DSM 5692 putative lipoprotein YP_003198291.1 1657468 D 485915 CDS YP_003198292.1 258405550 8419256 1658581..1659549 1 NC_013223.1 PFAM: DNA polymerase III delta; KEGG: dma:DMR_44680 hypothetical protein; DNA polymerase III delta 1659549 8419256 Dret_1427 Desulfohalobium retbaense DSM 5692 DNA polymerase III delta YP_003198292.1 1658581 D 485915 CDS YP_003198293.1 258405551 8419257 1659653..1660339 1 NC_013223.1 TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: dma:DMR_44670 DNA repair protein RadC; DNA repair protein RadC 1660339 8419257 Dret_1428 Desulfohalobium retbaense DSM 5692 DNA repair protein RadC YP_003198293.1 1659653 D 485915 CDS YP_003198294.1 258405552 8419258 1660623..1663100 1 NC_013223.1 KEGG: dma:DMR_44650 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; AAA ATPase; ATP-dependent protease La 1663100 8419258 Dret_1429 Desulfohalobium retbaense DSM 5692 ATP-dependent protease La YP_003198294.1 1660623 D 485915 CDS YP_003198295.1 258405553 8419259 1663358..1664188 1 NC_013223.1 PFAM: beta-lactamase domain protein; KEGG: dma:DMR_43120 hypothetical protein; beta-lactamase domain-containing protein 1664188 8419259 Dret_1430 Desulfohalobium retbaense DSM 5692 beta-lactamase domain-containing protein YP_003198295.1 1663358 D 485915 CDS YP_003198296.1 258405554 8419260 1664716..1665141 1 NC_013223.1 KEGG: dal:Dalk_4092 hypothetical protein; hypothetical protein 1665141 8419260 Dret_1431 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198296.1 1664716 D 485915 CDS YP_003198297.1 258405555 8419261 1665319..1666026 1 NC_013223.1 hypothetical protein 1666026 8419261 Dret_1432 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198297.1 1665319 D 485915 CDS YP_003198298.1 258405556 8419262 complement(1666037..1667200) 1 NC_013223.1 KEGG: cvi:CV_0812 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 1667200 8419262 Dret_1433 Desulfohalobium retbaense DSM 5692 diguanylate cyclase YP_003198298.1 1666037 R 485915 CDS YP_003198299.1 258405557 8419263 complement(1667300..1668508) 1 NC_013223.1 PFAM: domain of unknown function DUF1745; FIST C domain; KEGG: oca:OCAR_7506 hypothetical protein; hypothetical protein 1668508 8419263 Dret_1434 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198299.1 1667300 R 485915 CDS YP_003198300.1 258405558 8419264 1668939..1669307 1 NC_013223.1 PFAM: Cupin 2 conserved barrel domain protein; Cupin domain protein; KEGG: tdn:Suden_0432 cupin region; cupin 2 barrel domain-containing protein 1669307 8419264 Dret_1435 Desulfohalobium retbaense DSM 5692 cupin 2 barrel domain-containing protein YP_003198300.1 1668939 D 485915 CDS YP_003198301.1 258405559 8419265 1669472..1670137 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bph:Bphy_0987 ABC transporter related; ABC transporter 1670137 8419265 Dret_1436 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003198301.1 1669472 D 485915 CDS YP_003198302.1 258405560 8419266 1670134..1670928 1 NC_013223.1 PFAM: conserved hypothetical protein; KEGG: bmj:BMULJ_01745 putative ABC transport system permease protein; hypothetical protein 1670928 8419266 Dret_1437 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198302.1 1670134 D 485915 CDS YP_003198303.1 258405561 8419267 1671123..1671479 1 NC_013223.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: hch:HCH_00672 FOG: CheY-like receiver; response regulator receiver protein 1671479 8419267 Dret_1438 Desulfohalobium retbaense DSM 5692 response regulator receiver protein YP_003198303.1 1671123 D 485915 CDS YP_003198304.1 258405562 8419268 1671488..1672111 1 NC_013223.1 PFAM: CheC domain protein; KEGG: ppd:Ppro_0086 CheC, inhibitor of MCP methylation; CheC, inhibitor of MCP methylation 1672111 8419268 Dret_1439 Desulfohalobium retbaense DSM 5692 CheC, inhibitor of MCP methylation YP_003198304.1 1671488 D 485915 CDS YP_003198305.1 258405563 8419269 1672227..1673174 1 NC_013223.1 KEGG: pha:PSHAa1211 sensory box/GGDEF protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1673174 8419269 Dret_1440 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor-containing diguanylate cyclase YP_003198305.1 1672227 D 485915 CDS YP_003198306.1 258405564 8419270 complement(1673184..1673660) 1 NC_013223.1 PFAM: protein of unknown function DUF1499; KEGG: gsu:GSU2319 hypothetical protein; hypothetical protein 1673660 8419270 Dret_1441 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198306.1 1673184 R 485915 CDS YP_003198307.1 258405565 8419271 complement(1673663..1674700) 1 NC_013223.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: net:Neut_2145 ADP-ribosylation/crystallin J1; ADP-ribosylation/Crystallin J1 1674700 8419271 Dret_1442 Desulfohalobium retbaense DSM 5692 ADP-ribosylation/Crystallin J1 YP_003198307.1 1673663 R 485915 CDS YP_003198308.1 258405566 8419272 1675194..1675571 1 NC_013223.1 TIGRFAM: translation initiation factor SUI1; PFAM: translation initiation factor SUI1; KEGG: pca:Pcar_1480 translation initiation factor Sui1; translation initiation factor SUI1 1675571 8419272 Dret_1443 Desulfohalobium retbaense DSM 5692 translation initiation factor SUI1 YP_003198308.1 1675194 D 485915 CDS YP_003198309.1 258405567 8419273 complement(1675742..1676227) 1 NC_013223.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1676227 greA 8419273 greA Desulfohalobium retbaense DSM 5692 transcription elongation factor GreA YP_003198309.1 1675742 R 485915 CDS YP_003198310.1 258405568 8419274 complement(1676321..1676695) 1 NC_013223.1 hypothetical protein 1676695 8419274 Dret_1445 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198310.1 1676321 R 485915 CDS YP_003198311.1 258405569 8419275 complement(1676959..1678110) 1 NC_013223.1 PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron- sulfur binding domain protein; KEGG: pca:Pcar_1733 aldo/keto reductase family oxidoreductase; aldo/keto reductase 1678110 8419275 Dret_1446 Desulfohalobium retbaense DSM 5692 aldo/keto reductase YP_003198311.1 1676959 R 485915 CDS YP_003198312.1 258405570 8419276 complement(1678266..1679372) 1 NC_013223.1 PFAM: aminotransferase class I and II; aminotransferase class V; KEGG: mxa:MXAN_1407 aminotransferase, classes I and II; class I and II aminotransferase 1679372 8419276 Dret_1447 Desulfohalobium retbaense DSM 5692 class I and II aminotransferase YP_003198312.1 1678266 R 485915 CDS YP_003198313.1 258405571 8419277 complement(1679418..1679699) 1 NC_013223.1 hypothetical protein 1679699 8419277 Dret_1448 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198313.1 1679418 R 485915 CDS YP_003198314.1 258405572 8419278 1679714..1680232 1 NC_013223.1 hypothetical protein 1680232 8419278 Dret_1449 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198314.1 1679714 D 485915 CDS YP_003198315.1 258405573 8419279 1680371..1680883 1 NC_013223.1 hypothetical protein 1680883 8419279 Dret_1450 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198315.1 1680371 D 485915 CDS YP_003198316.1 258405574 8419280 complement(1680924..1681763) 1 NC_013223.1 KEGG: avn:Avin_41440 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase 1681763 8419280 Dret_1451 Desulfohalobium retbaense DSM 5692 glutamate racemase YP_003198316.1 1680924 R 485915 CDS YP_003198317.1 258405575 8419281 1682067..1682540 1 NC_013223.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: dma:DMR_01880 putative arsenate reductase; protein-tyrosine phosphatase 1682540 8419281 Dret_1452 Desulfohalobium retbaense DSM 5692 protein-tyrosine phosphatase YP_003198317.1 1682067 D 485915 CDS YP_003198318.1 258405576 8419282 1682801..1683901 1 NC_013223.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dat:HRM2_40940 UbiE5; type 11 methyltransferase 1683901 8419282 Dret_1453 Desulfohalobium retbaense DSM 5692 type 11 methyltransferase YP_003198318.1 1682801 D 485915 CDS YP_003198319.1 258405577 8419283 complement(1683911..1684009) 1 NC_013223.1 hypothetical protein 1684009 8419283 Dret_1454 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198319.1 1683911 R 485915 CDS YP_003198320.1 258405578 8419284 complement(1684050..1684652) 1 NC_013223.1 TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; NADPH- dependent FMN reductase; KEGG: noc:Noc_2414 flavoprotein WrbA; flavoprotein WrbA 1684652 8419284 Dret_1455 Desulfohalobium retbaense DSM 5692 flavoprotein WrbA YP_003198320.1 1684050 R 485915 CDS YP_003198321.1 258405579 8419285 complement(1684929..1685675) 1 NC_013223.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dvl:Dvul_0454 hemolysin A; hemolysin A 1685675 8419285 Dret_1456 Desulfohalobium retbaense DSM 5692 hemolysin A YP_003198321.1 1684929 R 485915 CDS YP_003198322.1 258405580 8419286 complement(1685946..1686449) 1 NC_013223.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase small subunit 1686449 leuD 8419286 leuD Desulfohalobium retbaense DSM 5692 3-isopropylmalate dehydratase small subunit YP_003198322.1 1685946 R 485915 CDS YP_003198323.1 258405581 8419287 complement(1686621..1687880) 1 NC_013223.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 1687880 8419287 Dret_1458 Desulfohalobium retbaense DSM 5692 3-isopropylmalate dehydratase large subunit YP_003198323.1 1686621 R 485915 CDS YP_003198324.1 258405582 8419288 complement(1687865..1689400) 1 NC_013223.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 1689400 8419288 Dret_1459 Desulfohalobium retbaense DSM 5692 2-isopropylmalate synthase YP_003198324.1 1687865 R 485915 CDS YP_003198325.1 258405583 8419289 complement(1689617..1690384) 1 NC_013223.1 TIGRFAM: CDP-diacylglycerol/serine O- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dvl:Dvul_0392 CDP-diacylglycerol--serine O- phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 1690384 8419289 Dret_1460 Desulfohalobium retbaense DSM 5692 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_003198325.1 1689617 R 485915 CDS YP_003198326.1 258405584 8419290 complement(1690463..1691104) 1 NC_013223.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 1691104 8419290 Dret_1461 Desulfohalobium retbaense DSM 5692 phosphatidylserine decarboxylase YP_003198326.1 1690463 R 485915 CDS YP_003198327.1 258405585 8419291 complement(1691207..1692361) 1 NC_013223.1 TIGRFAM: geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; KEGG: dma:DMR_43240 geranylgeranyl reductase; geranylgeranyl reductase 1692361 8419291 Dret_1462 Desulfohalobium retbaense DSM 5692 geranylgeranyl reductase YP_003198327.1 1691207 R 485915 CDS YP_003198328.1 258405586 8419292 1692664..1693344 1 NC_013223.1 TIGRFAM: siroheme synthase; KEGG: dvm:DvMF_0298 siroheme synthase; siroheme synthase 1693344 8419292 Dret_1463 Desulfohalobium retbaense DSM 5692 siroheme synthase YP_003198328.1 1692664 D 485915 CDS YP_003198329.1 258405587 8419293 1693322..1694149 1 NC_013223.1 PFAM: cytochrome c assembly protein; KEGG: dma:DMR_16430 putative cytochrome c assembly protein; cytochrome c assembly protein 1694149 8419293 Dret_1464 Desulfohalobium retbaense DSM 5692 cytochrome c assembly protein YP_003198329.1 1693322 D 485915 CDS YP_003198330.1 258405588 8419294 1694251..1695582 1 NC_013223.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1695582 hemA 8419294 hemA Desulfohalobium retbaense DSM 5692 glutamyl-tRNA reductase YP_003198330.1 1694251 D 485915 CDS YP_003198331.1 258405589 8419295 1695582..1695917 1 NC_013223.1 KEGG: dma:DMR_16410 hypothetical protein; hypothetical protein 1695917 8419295 Dret_1466 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198331.1 1695582 D 485915 CDS YP_003198332.1 258405590 8419296 1695924..1696940 1 NC_013223.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: dma:DMR_16400 tRNA(Ile)-lysidine synthase; tRNA(Ile)-lysidine synthetase 1696940 8419296 Dret_1467 Desulfohalobium retbaense DSM 5692 tRNA(Ile)-lysidine synthetase YP_003198332.1 1695924 D 485915 CDS YP_003198333.1 258405591 8419297 1696925..1697620 1 NC_013223.1 KEGG: eca:ECA3961 hypothetical protein; anti-ECFsigma factor ChrR 1697620 8419297 Dret_1468 Desulfohalobium retbaense DSM 5692 anti-ECFsigma factor ChrR YP_003198333.1 1696925 D 485915 CDS YP_003198334.1 258405592 8419298 complement(1698229..1698552) 1 NC_013223.1 PFAM: branched-chain amino acid transport; KEGG: dvu:DVU0032 hypothetical protein; branched-chain amino acid transport 1698552 8419298 Dret_1469 Desulfohalobium retbaense DSM 5692 branched-chain amino acid transport YP_003198334.1 1698229 R 485915 CDS YP_003198335.1 258405593 8419299 complement(1698528..1699271) 1 NC_013223.1 PFAM: AzlC family protein; KEGG: dps:DP2465 branched chain amino acid ABC transporter permease; AzlC family protein 1699271 8419299 Dret_1470 Desulfohalobium retbaense DSM 5692 AzlC family protein YP_003198335.1 1698528 R 485915 CDS YP_003198336.1 258405594 8419300 1699663..1701081 1 NC_013223.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: dde:Dde_0157 GntR family transcriptional regulator; GntR family transcriptional regulator 1701081 8419300 Dret_1471 Desulfohalobium retbaense DSM 5692 GntR family transcriptional regulator YP_003198336.1 1699663 D 485915 CDS YP_003198337.1 258405595 8419301 1701352..1702194 1 NC_013223.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dol:Dole_2763 substrate-binding region of ABC- type glycine betaine transport system; glycine/betaine ABC transporter substrate-binding protein 1702194 8419301 Dret_1472 Desulfohalobium retbaense DSM 5692 glycine/betaine ABC transporter substrate-binding protein YP_003198337.1 1701352 D 485915 CDS YP_003198338.1 258405596 8419302 1702497..1704506 1 NC_013223.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pca:Pcar_2397 TonB-dependent receptor; TonB-dependent receptor 1704506 8419302 Dret_1473 Desulfohalobium retbaense DSM 5692 TonB-dependent receptor YP_003198338.1 1702497 D 485915 CDS YP_003198339.1 258405597 8419303 1704512..1705942 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_2396 ABC-type transport system, putative ATPase component; ABC transporter 1705942 8419303 Dret_1474 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003198339.1 1704512 D 485915 CDS YP_003198340.1 258405598 8419304 1705926..1706597 1 NC_013223.1 PFAM: cobalt transport protein; KEGG: pca:Pcar_2395 ABC-type transport system, permease component; cobalt transport protein 1706597 8419304 Dret_1475 Desulfohalobium retbaense DSM 5692 cobalt transport protein YP_003198340.1 1705926 D 485915 CDS YP_003198341.1 258405599 8419305 1706590..1707135 1 NC_013223.1 KEGG: ppd:Ppro_1538 hypothetical protein; hypothetical protein 1707135 8419305 Dret_1476 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198341.1 1706590 D 485915 CDS YP_003198342.1 258405600 8419306 1707151..1707885 1 NC_013223.1 KEGG: sfu:Sfum_0275 conserved hypothetical cytosolic protein; hypothetical protein 1707885 8419306 Dret_1477 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198342.1 1707151 D 485915 CDS YP_003198343.1 258405601 8419307 complement(1707973..1708380) 1 NC_013223.1 KEGG: dat:HRM2_13500 hypothetical protein; hypothetical protein 1708380 8419307 Dret_1478 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198343.1 1707973 R 485915 CDS YP_003198344.1 258405602 8419308 complement(1708523..1709149) 1 NC_013223.1 hypothetical protein 1709149 8419308 Dret_1479 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198344.1 1708523 R 485915 CDS YP_003198345.1 258405603 8419309 1709221..1710432 1 NC_013223.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: glo:Glov_2618 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 1710432 8419309 Dret_1480 Desulfohalobium retbaense DSM 5692 DEAD/DEAH box helicase YP_003198345.1 1709221 D 485915 CDS YP_003198346.1 258405604 8419311 complement(1711303..1711767) 1 NC_013223.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ank:AnaeK_1081 GCN5-related N- acetyltransferase; N-acetyltransferase GCN5 1711767 8419311 Dret_1482 Desulfohalobium retbaense DSM 5692 N-acetyltransferase GCN5 YP_003198346.1 1711303 R 485915 CDS YP_003198347.1 258405605 8419312 complement(1712127..1713464) 1 NC_013223.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: dde:Dde_1846 amino acid carrier protein; amino acid carrier protein 1713464 8419312 Dret_1483 Desulfohalobium retbaense DSM 5692 amino acid carrier protein YP_003198347.1 1712127 R 485915 CDS YP_003198348.1 258405606 8419313 complement(1713878..1715050) 1 NC_013223.1 KEGG: dol:Dole_0057 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 1715050 8419313 Dret_1484 Desulfohalobium retbaense DSM 5692 alanine racemase YP_003198348.1 1713878 R 485915 CDS YP_003198349.1 258405607 8419314 complement(1715153..1716265) 1 NC_013223.1 TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: dma:DMR_45640 alanine dehydrogenase; alanine dehydrogenase 1716265 8419314 Dret_1485 Desulfohalobium retbaense DSM 5692 alanine dehydrogenase YP_003198349.1 1715153 R 485915 CDS YP_003198350.1 258405608 8419315 complement(1716686..1718263) 1 NC_013223.1 KEGG: dde:Dde_1552 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; amino acid-binding ACT domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: AAA ATPase; PAS domain containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator 1718263 8419315 Dret_1486 Desulfohalobium retbaense DSM 5692 PAS modulated Fis family sigma-54-specific transcriptional regulator YP_003198350.1 1716686 R 485915 CDS YP_003198351.1 258405609 8419316 complement(1718426..1719400) 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0800 hypothetical protein; 4Fe-4S ferredoxin 1719400 8419316 Dret_1487 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003198351.1 1718426 R 485915 CDS YP_003198352.1 258405610 8419317 1719981..1720844 1 NC_013223.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: aci:ACIAD3340 putative hydrolase; Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase 1720844 8419317 Dret_1488 Desulfohalobium retbaense DSM 5692 Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase YP_003198352.1 1719981 D 485915 CDS YP_003198353.1 258405611 8419318 complement(1721209..1721469) 1 NC_013223.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1; RNP-1 like RNA-binding protein 1721469 8419318 Dret_1489 Desulfohalobium retbaense DSM 5692 RNP-1 like RNA-binding protein YP_003198353.1 1721209 R 485915 CDS YP_003198354.1 258405612 8419319 complement(1722136..1723743) 1 NC_013223.1 TIGRFAM: peptide chain release factor 3; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: dma:DMR_43370 peptide chain release factor 3; peptide chain release factor 3 1723743 8419319 Dret_1490 Desulfohalobium retbaense DSM 5692 peptide chain release factor 3 YP_003198354.1 1722136 R 485915 CDS YP_003198355.1 258405613 8419320 1724206..1725615 1 NC_013223.1 hypothetical protein 1725615 8419320 Dret_1491 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198355.1 1724206 D 485915 CDS YP_003198356.1 258405614 8419321 1725608..1726405 1 NC_013223.1 KEGG: shn:Shewana3_2096 thioredoxin-disulfide reductase; hypothetical protein 1726405 8419321 Dret_1492 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198356.1 1725608 D 485915 CDS YP_003198357.1 258405615 8419322 1726392..1729991 1 NC_013223.1 PFAM: SMC domain protein; KEGG: CG3493 gene product from transcript CG3493-RA; SMC domain-containing protein 1729991 8419322 Dret_1493 Desulfohalobium retbaense DSM 5692 SMC domain-containing protein YP_003198357.1 1726392 D 485915 CDS YP_003198358.1 258405616 8419323 1729988..1730998 1 NC_013223.1 KEGG: spq:SPAB_01119 hypothetical protein; hypothetical protein 1730998 8419323 Dret_1494 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198358.1 1729988 D 485915 CDS YP_003198359.1 258405617 8419324 1731530..1732708 1 NC_013223.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dal:Dalk_2354 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1732708 8419324 Dret_1495 Desulfohalobium retbaense DSM 5692 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003198359.1 1731530 D 485915 CDS YP_003198360.1 258405618 8419325 complement(1733291..1734628) 1 NC_013223.1 PFAM: transposase IS4 family protein; KEGG: maq:Maqu_0982 transposase, IS4 family protein; transposase IS4 family protein 1734628 8419325 Dret_1496 Desulfohalobium retbaense DSM 5692 transposase IS4 family protein YP_003198360.1 1733291 R 485915 CDS YP_003198361.1 258405619 8419326 complement(1734780..1736312) 1 NC_013223.1 KEGG: mca:MCA1673 sensory box protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 1736312 8419326 Dret_1497 Desulfohalobium retbaense DSM 5692 diguanylate cyclase YP_003198361.1 1734780 R 485915 CDS YP_003198362.1 258405620 8419327 complement(1736803..1738269) 1 NC_013223.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; FAD dependent oxidoreductase; HI0933 family protein; KEGG: dal:Dalk_3001 pyridine nucleotide-disulphide oxidoreductase dimerisation region; pyridine nucleotide-disulfide oxidoreductase dimerisation region 1738269 8419327 Dret_1498 Desulfohalobium retbaense DSM 5692 pyridine nucleotide-disulfide oxidoreductase dimerisation region YP_003198362.1 1736803 R 485915 CDS YP_003198363.1 258405621 8419328 complement(1738313..1738651) 1 NC_013223.1 KEGG: tgr:Tgr7_2386 hypothetical protein; hypothetical protein 1738651 8419328 Dret_1499 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198363.1 1738313 R 485915 CDS YP_003198364.1 258405622 8419329 complement(1739530..1740288) 1 NC_013223.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pca:Pcar_0791 putative DNA replication factor; IstB domain-containing protein ATP-binding protein 1740288 8419329 Dret_1500 Desulfohalobium retbaense DSM 5692 IstB domain-containing protein ATP-binding protein YP_003198364.1 1739530 R 485915 CDS YP_003198365.1 258405623 8419330 complement(1740285..1741784) 1 NC_013223.1 KEGG: dat:HRM2_39510 IstA2; IstA2 1741784 8419330 Dret_1501 Desulfohalobium retbaense DSM 5692 IstA2 YP_003198365.1 1740285 R 485915 CDS YP_003198366.1 258405624 8419331 complement(1741882..1742517) 1 NC_013223.1 KEGG: oan:Oant_4651 transposase IS116/IS110/IS902 family protein; hypothetical protein 1742517 8419331 Dret_1502 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198366.1 1741882 R 485915 CDS YP_003198367.1 258405625 8419332 complement(1742813..1744162) 1 NC_013223.1 KEGG: dal:Dalk_2259 PAS modulated sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: AAA ATPase; PAS domain containing protein; PAS modulated Fis family sigma-54-specific transcriptional regulator 1744162 8419332 Dret_1503 Desulfohalobium retbaense DSM 5692 PAS modulated Fis family sigma-54-specific transcriptional regulator YP_003198367.1 1742813 R 485915 CDS YP_003198368.1 258405626 8419333 1744540..1745610 1 NC_013223.1 KEGG: sat:SYN_00147 putative cytoplasmic protein; hypothetical protein 1745610 8419333 Dret_1504 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198368.1 1744540 D 485915 CDS YP_003198369.1 258405627 8419334 complement(1746248..1748623) 1 NC_013223.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_1166 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1748623 8419334 Dret_1505 Desulfohalobium retbaense DSM 5692 methyl-accepting chemotaxis sensory transducer YP_003198369.1 1746248 R 485915 CDS YP_003198370.1 258405628 8419335 1749615..1751072 1 NC_013223.1 PFAM: Lytic transglycosylase catalytic; extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: pca:Pcar_0524 periplasmic binding transport protein/transglycosylase; Lytic transglycosylase catalytic 1751072 8419335 Dret_1506 Desulfohalobium retbaense DSM 5692 Lytic transglycosylase catalytic YP_003198370.1 1749615 D 485915 CDS YP_003198371.1 258405629 8419336 1751808..1752506 1 NC_013223.1 PFAM: protein of unknown function DUF554; KEGG: dvm:DvMF_3049 protein of unknown function DUF554; hypothetical protein 1752506 8419336 Dret_1507 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198371.1 1751808 D 485915 CDS YP_003198372.1 258405630 8419337 1752828..1753229 1 NC_013223.1 PFAM: protein of unknown function DUF1232; KEGG: pcr:Pcryo_0858 hypothetical protein; hypothetical protein 1753229 8419337 Dret_1508 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198372.1 1752828 D 485915 CDS YP_003198373.1 258405631 8419338 1753369..1753575 1 NC_013223.1 hypothetical protein 1753575 8419338 Dret_1509 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198373.1 1753369 D 485915 CDS YP_003198374.1 258405632 8419339 complement(1753516..1755261) 1 NC_013223.1 KEGG: tbd:Tbd_2634 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; GAF domain protein; PAS domain containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase 1755261 8419339 Dret_1510 Desulfohalobium retbaense DSM 5692 PAS/PAC and GAF sensor-containing diguanylate cyclase YP_003198374.1 1753516 R 485915 CDS YP_003198375.1 258405633 8419340 1755437..1755922 1 NC_013223.1 KEGG: similar to transmembrane protein 132E; transmembrane protein 132E-like protein 1755922 8419340 Dret_1511 Desulfohalobium retbaense DSM 5692 transmembrane protein 132E-like protein YP_003198375.1 1755437 D 485915 CDS YP_003198376.1 258405634 8419341 1756071..1757528 1 NC_013223.1 PFAM: protein of unknown function UPF0061; KEGG: nwi:Nwi_0945 hypothetical protein; hypothetical protein 1757528 8419341 Dret_1512 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198376.1 1756071 D 485915 CDS YP_003198377.1 258405635 8419342 1757698..1757868 1 NC_013223.1 hypothetical protein 1757868 8419342 Dret_1513 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198377.1 1757698 D 485915 CDS YP_003198378.1 258405636 8419343 1758023..1758862 1 NC_013223.1 KEGG: pin:Ping_1452 RNA-binding S1 domain- containing protein; RNA-binding S1 domain-containing protein 1758862 8419343 Dret_1514 Desulfohalobium retbaense DSM 5692 RNA-binding S1 domain-containing protein YP_003198378.1 1758023 D 485915 CDS YP_003198379.1 258405637 8419344 complement(1759184..1759849) 1 NC_013223.1 KEGG: sat:SYN_00670 hypothetical protein; hypothetical protein 1759849 8419344 Dret_1515 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198379.1 1759184 R 485915 CDS YP_003198380.1 258405638 8419345 1760034..1760900 1 NC_013223.1 KEGG: hha:Hhal_0210 hypothetical protein; hypothetical protein 1760900 8419345 Dret_1516 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198380.1 1760034 D 485915 CDS YP_003198381.1 258405639 8419346 complement(1760839..1761966) 1 NC_013223.1 KEGG: hha:Hhal_0209 endoglucanase; endoglucanase 1761966 8419346 Dret_1517 Desulfohalobium retbaense DSM 5692 endoglucanase YP_003198381.1 1760839 R 485915 CDS YP_003198382.1 258405640 8419347 complement(1761972..1763615) 1 NC_013223.1 PFAM: glycosyl transferase family 2; KEGG: hha:Hhal_0208 cellulose synthase (UDP- forming); family 2 glycosyl transferase 1763615 8419347 Dret_1518 Desulfohalobium retbaense DSM 5692 family 2 glycosyl transferase YP_003198382.1 1761972 R 485915 CDS YP_003198383.1 258405641 8419348 complement(1763631..1765376) 1 NC_013223.1 KEGG: hha:Hhal_0207 TPR repeat-containing protein; hypothetical protein 1765376 8419348 Dret_1519 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198383.1 1763631 R 485915 CDS YP_003198384.1 258405642 8419349 complement(1765383..1766075) 1 NC_013223.1 SMART: Tetratricopeptide repeat; KEGG: hha:Hhal_0206 TPR repeat-containing protein; hypothetical protein 1766075 8419349 Dret_1520 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198384.1 1765383 R 485915 CDS YP_003198385.1 258405643 8419350 complement(1766072..1766590) 1 NC_013223.1 KEGG: bac:BamMC406_1293 cellulose synthase domain- containing protein; hypothetical protein 1766590 8419350 Dret_1521 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198385.1 1766072 R 485915 CDS YP_003198386.1 258405644 8419351 complement(1766587..1767030) 1 NC_013223.1 KEGG: dat:HRM2_43520 RsbW; putative anti-sigma regulatory factor 1767030 8419351 Dret_1522 Desulfohalobium retbaense DSM 5692 putative anti-sigma regulatory factor YP_003198386.1 1766587 R 485915 CDS YP_003198387.1 258405645 8419352 complement(1767023..1767382) 1 NC_013223.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: kpu:KP1_1977 probable anti-sigma factor antagonist; anti-sigma-factor antagonist 1767382 8419352 Dret_1523 Desulfohalobium retbaense DSM 5692 anti-sigma-factor antagonist YP_003198387.1 1767023 R 485915 CDS YP_003198388.1 258405646 8419353 complement(1767581..1768810) 1 NC_013223.1 KEGG: sat:SYN_00230 response regulator receiver domain-containing protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; PAS domain containing protein; putative PAS/PAC sensor protein 1768810 8419353 Dret_1524 Desulfohalobium retbaense DSM 5692 putative PAS/PAC sensor protein YP_003198388.1 1767581 R 485915 CDS YP_003198389.1 258405647 8419354 1768821..1769468 1 NC_013223.1 hypothetical protein 1769468 8419354 Dret_1525 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198389.1 1768821 D 485915 CDS YP_003198390.1 258405648 8419355 complement(1769556..1770053) 1 NC_013223.1 PFAM: TspO/MBR family protein; KEGG: net:Neut_1064 TspO and MBR like proteins; TspO and MBR-like protein 1770053 8419355 Dret_1526 Desulfohalobium retbaense DSM 5692 TspO and MBR-like protein YP_003198390.1 1769556 R 485915 CDS YP_003198391.1 258405649 8419356 complement(1770445..1770720) 1 NC_013223.1 hypothetical protein 1770720 8419356 Dret_1527 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198391.1 1770445 R 485915 CDS YP_003198392.1 258405650 8419357 complement(1771136..1772101) 1 NC_013223.1 KEGG: hch:HCH_03148 response regulator; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 1772101 8419357 Dret_1528 Desulfohalobium retbaense DSM 5692 diguanylate cyclase YP_003198392.1 1771136 R 485915 CDS YP_003198393.1 258405651 8419358 complement(1772088..1773206) 1 NC_013223.1 PFAM: cobalamin B12-binding domain protein; KEGG: sfu:Sfum_3258 cobalamin B12-binding domain protein; cobalamin B12-binding domain-containing protein 1773206 8419358 Dret_1529 Desulfohalobium retbaense DSM 5692 cobalamin B12-binding domain-containing protein YP_003198393.1 1772088 R 485915 CDS YP_003198394.1 258405652 8419359 1773246..1773503 1 NC_013223.1 hypothetical protein 1773503 8419359 Dret_1530 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198394.1 1773246 D 485915 CDS YP_003198395.1 258405653 8419360 1774073..1774717 1 NC_013223.1 hypothetical protein 1774717 8419360 Dret_1531 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198395.1 1774073 D 485915 CDS YP_003198396.1 258405654 8419361 complement(1774754..1775266) 1 NC_013223.1 KEGG: rle:RL4488 hypothetical protein; hypothetical protein 1775266 8419361 Dret_1532 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198396.1 1774754 R 485915 CDS YP_003198397.1 258405655 8419362 complement(1775320..1775421) 1 NC_013223.1 hypothetical protein 1775421 8419362 Dret_1533 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198397.1 1775320 R 485915 CDS YP_003198398.1 258405656 8419363 complement(1775587..1776171) 1 NC_013223.1 KEGG: mms:mma_2523 hypothetical protein; hypothetical protein 1776171 8419363 Dret_1534 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198398.1 1775587 R 485915 CDS YP_003198399.1 258405657 8419364 complement(1776469..1776837) 1 NC_013223.1 hypothetical protein 1776837 8419364 Dret_1535 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198399.1 1776469 R 485915 CDS YP_003198400.1 258405658 8419365 complement(1776922..1777275) 1 NC_013223.1 hypothetical protein 1777275 8419365 Dret_1536 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198400.1 1776922 R 485915 CDS YP_003198401.1 258405659 8419366 1777743..1778207 1 NC_013223.1 KEGG: dat:HRM2_39510 IstA2; hypothetical protein 1778207 8419366 Dret_1537 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198401.1 1777743 D 485915 CDS YP_003198402.1 258405660 8419367 complement(1778183..1781446) 1 NC_013223.1 PFAM: helicase domain protein; SMART: DEAD-like helicase; KEGG: dat:HRM2_44520 DEAD/DEAH box helicase:helicase, C-terminal; helicase domain-containing protein 1781446 8419367 Dret_1538 Desulfohalobium retbaense DSM 5692 helicase domain-containing protein YP_003198402.1 1778183 R 485915 CDS YP_003198403.1 258405661 8419368 complement(1781443..1783269) 1 NC_013223.1 KEGG: dat:HRM2_44530 hypothetical protein; hypothetical protein 1783269 8419368 Dret_1539 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198403.1 1781443 R 485915 CDS YP_003198404.1 258405662 8419369 complement(1783262..1784488) 1 NC_013223.1 KEGG: dat:HRM2_44540 hypothetical protein; hypothetical protein 1784488 8419369 Dret_1540 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198404.1 1783262 R 485915 CDS YP_003198405.1 258405663 8419370 1785040..1785210 1 NC_013223.1 hypothetical protein 1785210 8419370 Dret_1541 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198405.1 1785040 D 485915 CDS YP_003198406.1 258405664 8419371 1785372..1786598 1 NC_013223.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1786598 8419371 Dret_1542 Desulfohalobium retbaense DSM 5692 transposase IS204/IS1001/IS1096/IS1165 family protein YP_003198406.1 1785372 D 485915 CDS YP_003198407.1 258405665 8419372 complement(1786758..1789697) 1 NC_013223.1 PFAM: type III restriction protein res subunit; helicase domain protein; phosphoribosyl-ATP pyrophosphohydrolase; SMART: DEAD-like helicase ; helicase domain protein; KEGG: sfu:Sfum_1438 type III restriction enzyme, res subunit; type III restriction protein res subunit 1789697 8419372 Dret_1543 Desulfohalobium retbaense DSM 5692 type III restriction protein res subunit YP_003198407.1 1786758 R 485915 CDS YP_003198408.1 258405666 8419373 complement(1789770..1790372) 1 NC_013223.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: vvy:VV2199 tellurite resistance protein- related protein; type 11 methyltransferase 1790372 8419373 Dret_1544 Desulfohalobium retbaense DSM 5692 type 11 methyltransferase YP_003198408.1 1789770 R 485915 CDS YP_003198409.1 258405667 8419376 complement(1790770..1791681) 1 NC_013223.1 KEGG: nwi:Nwi_1252 restriction endonuclease; restriction endonuclease 1791681 8419376 Dret_1547 Desulfohalobium retbaense DSM 5692 restriction endonuclease YP_003198409.1 1790770 R 485915 CDS YP_003198410.1 258405668 8419378 complement(1792292..1792648) 1 NC_013223.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: dvl:Dvul_1411 preprotein translocase subunit SecG; preprotein translocase subunit SecG 1792648 8419378 Dret_1548 Desulfohalobium retbaense DSM 5692 preprotein translocase subunit SecG YP_003198410.1 1792292 R 485915 CDS YP_003198411.1 258405669 8419379 complement(1792723..1793481) 1 NC_013223.1 TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; KEGG: dvm:DvMF_0348 triose-phosphate isomerase; triosephosphate isomerase 1793481 8419379 Dret_1549 Desulfohalobium retbaense DSM 5692 triosephosphate isomerase YP_003198411.1 1792723 R 485915 CDS YP_003198412.1 258405670 8419380 1793562..1793756 1 NC_013223.1 hypothetical protein 1793756 8419380 Dret_1550 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198412.1 1793562 D 485915 CDS YP_003198413.1 258405671 8419381 complement(1793814..1794992) 1 NC_013223.1 PFAM: phosphoglycerate kinase; KEGG: gbm:Gbem_2337 phosphoglycerate kinase; phosphoglycerate kinase 1794992 8419381 Dret_1551 Desulfohalobium retbaense DSM 5692 phosphoglycerate kinase YP_003198413.1 1793814 R 485915 CDS YP_003198414.1 258405672 8419382 complement(1795569..1796012) 1 NC_013223.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: dvm:DvMF_0347 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 1796012 8419382 Dret_1552 Desulfohalobium retbaense DSM 5692 ribosomal-protein-alanine acetyltransferase YP_003198414.1 1795569 R 485915 CDS YP_003198415.1 258405673 8419383 1796011..1796559 1 NC_013223.1 PFAM: NUDIX hydrolase; KEGG: dma:DMR_18290 isopentenyl-diphosphate delta- isomerase family protein; NUDIX hydrolase 1796559 8419383 Dret_1553 Desulfohalobium retbaense DSM 5692 NUDIX hydrolase YP_003198415.1 1796011 D 485915 CDS YP_003198416.1 258405674 8419384 complement(1797287..1798096) 1 NC_013223.1 PFAM: inositol monophosphatase; KEGG: dvm:DvMF_0345 inositol-phosphate phosphatase; inositol monophosphatase 1798096 8419384 Dret_1554 Desulfohalobium retbaense DSM 5692 inositol monophosphatase YP_003198416.1 1797287 R 485915 CDS YP_003198417.1 258405675 8419385 complement(1798219..1799244) 1 NC_013223.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: dma:DMR_18270 rod shape-determining protein MreB; rod shape-determining protein MreB 1799244 8419385 Dret_1555 Desulfohalobium retbaense DSM 5692 rod shape-determining protein MreB YP_003198417.1 1798219 R 485915 CDS YP_003198418.1 258405676 8419386 complement(1800095..1801093) 1 NC_013223.1 PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: dde:Dde_1994 hypothetical protein; putative phytochrome sensor protein 1801093 8419386 Dret_1556 Desulfohalobium retbaense DSM 5692 putative phytochrome sensor protein YP_003198418.1 1800095 R 485915 CDS YP_003198419.1 258405677 8419387 complement(1801147..1801359) 1 NC_013223.1 KEGG: sfu:Sfum_3308 conserved hypothetical cytosolic protein; hypothetical protein 1801359 8419387 Dret_1557 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198419.1 1801147 R 485915 CDS YP_003198420.1 258405678 8419388 1801533..1803359 1 NC_013223.1 KEGG: dde:Dde_1995 hypothetical protein; hypothetical protein 1803359 8419388 Dret_1558 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198420.1 1801533 D 485915 CDS YP_003198421.1 258405679 8419389 1803838..1804917 1 NC_013223.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: dvu:DVU1684 glycine cleavage system T protein; glycine cleavage system T protein 1804917 8419389 Dret_1559 Desulfohalobium retbaense DSM 5692 glycine cleavage system T protein YP_003198421.1 1803838 D 485915 CDS YP_003198422.1 258405680 8419390 1805467..1805640 1 NC_013223.1 hypothetical protein 1805640 8419390 Dret_1560 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198422.1 1805467 D 485915 CDS YP_003198423.1 258405681 8419391 complement(1805987..1807051) 1 NC_013223.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: oan:Oant_4496 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 1807051 8419391 Dret_1561 Desulfohalobium retbaense DSM 5692 transposase IS116/IS110/IS902 family protein YP_003198423.1 1805987 R 485915 CDS YP_003198424.1 258405682 8419392 1807265..1807999 1 NC_013223.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1807999 8419392 Dret_1562 Desulfohalobium retbaense DSM 5692 16S ribosomal RNA methyltransferase RsmE YP_003198424.1 1807265 D 485915 CDS YP_003198425.1 258405683 8419393 1808307..1808768 1 NC_013223.1 KEGG: hypothetical protein; hypothetical protein 1808768 8419393 Dret_1563 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198425.1 1808307 D 485915 CDS YP_003198426.1 258405684 8419394 1809033..1810247 1 NC_013223.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: dma:DMR_18220 putative ATPase; recombination factor protein RarA 1810247 8419394 Dret_1564 Desulfohalobium retbaense DSM 5692 recombination factor protein RarA YP_003198426.1 1809033 D 485915 CDS YP_003198427.1 258405685 8419395 complement(1811157..1814063) 1 NC_013223.1 PFAM: Peptidase M16C associated domain protein; peptidase M16 domain protein; KEGG: sfu:Sfum_1661 peptidase M16C associated domain protein; Peptidase M16C associated domain-containing protein 1814063 8419395 Dret_1565 Desulfohalobium retbaense DSM 5692 Peptidase M16C associated domain-containing protein YP_003198427.1 1811157 R 485915 CDS YP_003198428.1 258405686 8419396 complement(1814909..1815904) 1 NC_013223.1 KEGG: dps:DP0367 hypothetical protein; hypothetical protein 1815904 8419396 Dret_1566 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198428.1 1814909 R 485915 CDS YP_003198429.1 258405687 8419397 complement(1815968..1816987) 1 NC_013223.1 PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: dps:DP0368 hypothetical protein; hypothetical protein 1816987 8419397 Dret_1567 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198429.1 1815968 R 485915 CDS YP_003198430.1 258405688 8419398 complement(1817080..1817910) 1 NC_013223.1 KEGG: sfu:Sfum_3885 hypothetical protein; hypothetical protein 1817910 8419398 Dret_1568 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198430.1 1817080 R 485915 CDS YP_003198431.1 258405689 8419399 complement(1817900..1818529) 1 NC_013223.1 KEGG: sfu:Sfum_3886 glycoside hydrolase, family 13 domain protein; glycoside hydrolase family protein 1818529 8419399 Dret_1569 Desulfohalobium retbaense DSM 5692 glycoside hydrolase family protein YP_003198431.1 1817900 R 485915 CDS YP_003198432.1 258405690 8419400 complement(1818526..1819083) 1 NC_013223.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sfu:Sfum_3887 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 1819083 8419400 Dret_1570 Desulfohalobium retbaense DSM 5692 ECF subfamily RNA polymerase sigma-24 subunit YP_003198432.1 1818526 R 485915 CDS YP_003198433.1 258405691 8419401 1819609..1819761 1 NC_013223.1 hypothetical protein 1819761 8419401 Dret_1571 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198433.1 1819609 D 485915 CDS YP_003198434.1 258405692 8419402 complement(1820072..1821490) 1 NC_013223.1 PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: dde:Dde_1315 UTP--glucose-1-phosphate uridylyltransferase; UTP--glucose-1-phosphate uridylyltransferase 1821490 8419402 Dret_1572 Desulfohalobium retbaense DSM 5692 UTP--glucose-1-phosphate uridylyltransferase YP_003198434.1 1820072 R 485915 CDS YP_003198435.1 258405693 8419403 1821875..1822861 1 NC_013223.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; KEGG: gme:Gmet_2329 UDP-galactose 4-epimerase; UDP-glucose 4-epimerase 1822861 8419403 Dret_1573 Desulfohalobium retbaense DSM 5692 UDP-glucose 4-epimerase YP_003198435.1 1821875 D 485915 CDS YP_003198436.1 258405694 8419404 1823193..1823684 1 NC_013223.1 KEGG: dma:DMR_11410 hypothetical protein; hypothetical protein 1823684 8419404 Dret_1574 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198436.1 1823193 D 485915 CDS YP_003198437.1 258405695 8419405 1824435..1825499 1 NC_013223.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: oan:Oant_4496 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 1825499 8419405 Dret_1575 Desulfohalobium retbaense DSM 5692 transposase IS116/IS110/IS902 family protein YP_003198437.1 1824435 D 485915 CDS YP_003198438.1 258405696 8419406 complement(1826109..1827224) 1 NC_013223.1 KEGG: dvm:DvMF_3044 hypothetical protein; hypothetical protein 1827224 8419406 Dret_1576 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198438.1 1826109 R 485915 CDS YP_003198439.1 258405697 8419407 1827560..1827937 1 NC_013223.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: dma:DMR_31770 glycine cleavage system H protein; glycine cleavage system H protein 1827937 8419407 Dret_1577 Desulfohalobium retbaense DSM 5692 glycine cleavage system H protein YP_003198439.1 1827560 D 485915 CDS YP_003198440.1 258405698 8419408 1827986..1829317 1 NC_013223.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 1829317 8419408 Dret_1578 Desulfohalobium retbaense DSM 5692 glycine dehydrogenase subunit 1 YP_003198440.1 1827986 D 485915 CDS YP_003198441.1 258405699 8419409 1829314..1830780 1 NC_013223.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 1830780 8419409 Dret_1579 Desulfohalobium retbaense DSM 5692 glycine dehydrogenase subunit 2 YP_003198441.1 1829314 D 485915 CDS YP_003198442.1 258405700 8419410 1830767..1832137 1 NC_013223.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: dvl:Dvul_1653 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1832137 8419410 Dret_1580 Desulfohalobium retbaense DSM 5692 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003198442.1 1830767 D 485915 CDS YP_003198443.1 258405701 8419411 1832263..1832916 1 NC_013223.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: dvm:DvMF_2587 maf protein; maf protein 1832916 8419411 Dret_1581 Desulfohalobium retbaense DSM 5692 maf protein YP_003198443.1 1832263 D 485915 CDS YP_003198444.1 258405702 8419412 1833016..1833498 1 NC_013223.1 PFAM: phosphatidylglycerophosphatase A; KEGG: dvl:Dvul_2413 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 1833498 8419412 Dret_1582 Desulfohalobium retbaense DSM 5692 phosphatidylglycerophosphatase A YP_003198444.1 1833016 D 485915 CDS YP_003198445.1 258405703 8419413 1833562..1834218 1 NC_013223.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: ilo:IL2439 hemolysin III-like protein; hemolysin III family channel protein 1834218 8419413 Dret_1583 Desulfohalobium retbaense DSM 5692 hemolysin III family channel protein YP_003198445.1 1833562 D 485915 CDS YP_003198446.1 258405704 8419414 complement(1834783..1835382) 1 NC_013223.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3633 peptidoglycan-associated lipoprotein, putative; peptidoglycan-associated lipoprotein 1835382 8419414 Dret_1584 Desulfohalobium retbaense DSM 5692 peptidoglycan-associated lipoprotein YP_003198446.1 1834783 R 485915 CDS YP_003198447.1 258405705 8419415 complement(1835774..1837087) 1 NC_013223.1 PFAM: WD40 domain protein beta Propeller; KEGG: dde:Dde_3632 TolB protein, putative; WD40 domain-containing protein beta Propeller 1837087 8419415 Dret_1585 Desulfohalobium retbaense DSM 5692 WD40 domain-containing protein beta Propeller YP_003198447.1 1835774 R 485915 CDS YP_003198448.1 258405706 8419416 complement(1837094..1837924) 1 NC_013223.1 TIGRFAM: TonB family protein; protein TolA; KEGG: dde:Dde_3631 TonB-like; TonB family protein 1837924 8419416 Dret_1586 Desulfohalobium retbaense DSM 5692 TonB family protein YP_003198448.1 1837094 R 485915 CDS YP_003198449.1 258405707 8419417 complement(1837953..1838369) 1 NC_013223.1 TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dvm:DvMF_2363 protein TolR; protein TolR 1838369 8419417 Dret_1587 Desulfohalobium retbaense DSM 5692 protein TolR YP_003198449.1 1837953 R 485915 CDS YP_003198450.1 258405708 8419418 complement(1838374..1839105) 1 NC_013223.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dma:DMR_13890 putative protein TolQ; MotA/TolQ/ExbB proton channel 1839105 8419418 Dret_1588 Desulfohalobium retbaense DSM 5692 MotA/TolQ/ExbB proton channel YP_003198450.1 1838374 R 485915 CDS YP_003198451.1 258405709 8419419 complement(1839282..1839944) 1 NC_013223.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dma:DMR_17210 PHP domain protein; hypothetical protein 1839944 8419419 Dret_1589 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198451.1 1839282 R 485915 CDS YP_003198452.1 258405710 8419420 complement(1839968..1840462) 1 NC_013223.1 PFAM: protein of unknown function DUF151; KEGG: dma:DMR_17220 hypothetical protein; hypothetical protein 1840462 8419420 Dret_1590 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198452.1 1839968 R 485915 CDS YP_003198453.1 258405711 8419421 complement(1840456..1841793) 1 NC_013223.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1841793 8419421 Dret_1591 Desulfohalobium retbaense DSM 5692 (dimethylallyl)adenosine tRNA methylthiotransferase YP_003198453.1 1840456 R 485915 CDS YP_003198454.1 258405712 8419422 complement(1841932..1842549) 1 NC_013223.1 KEGG: dma:DMR_17280 putative adenylylsulfate kinase; putative adenylylsulfate kinase 1842549 8419422 Dret_1592 Desulfohalobium retbaense DSM 5692 putative adenylylsulfate kinase YP_003198454.1 1841932 R 485915 CDS YP_003198455.1 258405713 8419423 complement(1842840..1843271) 1 NC_013223.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: dal:Dalk_4352 nitrogen-fixing NifU domain protein; nitrogen-fixing NifU domain-containing protein 1843271 8419423 Dret_1593 Desulfohalobium retbaense DSM 5692 nitrogen-fixing NifU domain-containing protein YP_003198455.1 1842840 R 485915 CDS YP_003198456.1 258405714 8419424 complement(1843513..1844436) 1 NC_013223.1 catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 1844436 8419424 Dret_1594 Desulfohalobium retbaense DSM 5692 putative manganese-dependent inorganic pyrophosphatase YP_003198456.1 1843513 R 485915 CDS YP_003198457.1 258405715 8419425 complement(1844955..1845701) 1 NC_013223.1 KEGG: dvl:Dvul_1499 hypothetical protein; hypothetical protein 1845701 8419425 Dret_1595 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198457.1 1844955 R 485915 CDS YP_003198458.1 258405716 8419426 complement(1845661..1846143) 1 NC_013223.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: dde:Dde_1776 PTS system, IIB component; PTS system sorbose subfamily transporter subunit IIB 1846143 8419426 Dret_1596 Desulfohalobium retbaense DSM 5692 PTS system sorbose subfamily transporter subunit IIB YP_003198458.1 1845661 R 485915 CDS YP_003198459.1 258405717 8419427 complement(1846136..1846546) 1 NC_013223.1 PFAM: PTS system fructose subfamily IIA component; KEGG: dma:DMR_25830 phosphotransferase system enzyme IIA component; PTS system fructose subfamily transporter subunit IIA 1846546 8419427 Dret_1597 Desulfohalobium retbaense DSM 5692 PTS system fructose subfamily transporter subunit IIA YP_003198459.1 1846136 R 485915 CDS YP_003198460.1 258405718 8419428 complement(1846615..1847499) 1 NC_013223.1 PFAM: conserved hypothetical protein; KEGG: dvm:DvMF_0424 hypothetical protein; hypothetical protein 1847499 8419428 Dret_1598 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198460.1 1846615 R 485915 CDS YP_003198461.1 258405719 8419429 complement(1847620..1848069) 1 NC_013223.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: dma:DMR_25850 putative phosphotransferase system nitrogen regulatory IIA component; putative PTS IIA-like nitrogen-regulatory protein PtsN 1848069 8419429 Dret_1599 Desulfohalobium retbaense DSM 5692 putative PTS IIA-like nitrogen-regulatory protein PtsN YP_003198461.1 1847620 R 485915 CDS YP_003198462.1 258405720 8419430 complement(1848069..1848617) 1 NC_013223.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: dma:DMR_25860 sigma 54 modulation protein/ribosomal protein S30EA domain protein; sigma 54 modulation protein/30S ribosomal protein S30EA 1848617 8419430 Dret_1600 Desulfohalobium retbaense DSM 5692 sigma 54 modulation protein/30S ribosomal protein S30EA YP_003198462.1 1848069 R 485915 CDS YP_003198463.1 258405721 8419431 complement(1848689..1850113) 1 NC_013223.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; KEGG: dvl:Dvul_1505 RNA polymerase, sigma 54 subunit, RpoN; RNA polymerase sigma 54 subunit RpoN 1850113 8419431 Dret_1601 Desulfohalobium retbaense DSM 5692 RNA polymerase sigma 54 subunit RpoN YP_003198463.1 1848689 R 485915 CDS YP_003198464.1 258405722 8419432 complement(1850493..1851221) 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvm:DvMF_0428 ABC transporter related; ABC transporter 1851221 8419432 Dret_1602 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003198464.1 1850493 R 485915 CDS YP_003198465.1 258405723 8419433 complement(1851202..1851747) 1 NC_013223.1 PFAM: OstA family protein; KEGG: dvm:DvMF_0429 OstA family protein; OstA family protein 1851747 8419433 Dret_1603 Desulfohalobium retbaense DSM 5692 OstA family protein YP_003198465.1 1851202 R 485915 CDS YP_003198466.1 258405724 8419434 complement(1851744..1852322) 1 NC_013223.1 PFAM: protein of unknown function DUF1239; KEGG: dde:Dde_1768 hypothetical protein; hypothetical protein 1852322 8419434 Dret_1604 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198466.1 1851744 R 485915 CDS YP_003198467.1 258405725 8419435 complement(1852301..1852822) 1 NC_013223.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: dde:Dde_1767 phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 1852822 8419435 Dret_1605 Desulfohalobium retbaense DSM 5692 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_003198467.1 1852301 R 485915 CDS YP_003198468.1 258405726 8419436 complement(1852812..1853627) 1 NC_013223.1 TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: dvm:DvMF_0432 2-dehydro-3- deoxyphosphooctonate aldolase; 2-dehydro-3-deoxyphosphooctonate aldolase 1853627 8419436 Dret_1606 Desulfohalobium retbaense DSM 5692 2-dehydro-3-deoxyphosphooctonate aldolase YP_003198468.1 1852812 R 485915 CDS YP_003198469.1 258405727 8419437 complement(1853628..1855268) 1 NC_013223.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1855268 pyrG 8419437 pyrG Desulfohalobium retbaense DSM 5692 CTP synthetase YP_003198469.1 1853628 R 485915 CDS YP_003198470.1 258405728 8419438 1855560..1856366 1 NC_013223.1 KEGG: dds:Ddes_0976 phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase 1856366 8419438 Dret_1608 Desulfohalobium retbaense DSM 5692 Phosphoribosylformylglycinamidine synthase YP_003198470.1 1855560 D 485915 CDS YP_003198471.1 258405729 8419439 1856393..1856890 1 NC_013223.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dde:Dde_1779 tRNA-adenosine deaminase; zinc-binding CMP/dCMP deaminase 1856890 8419439 Dret_1609 Desulfohalobium retbaense DSM 5692 zinc-binding CMP/dCMP deaminase YP_003198471.1 1856393 D 485915 CDS YP_003198472.1 258405730 8419441 1857181..1858365 1 NC_013223.1 PFAM: integrase family protein; KEGG: lpc:LPC_0202 integrase; integrase family protein 1858365 8419441 Dret_1610 Desulfohalobium retbaense DSM 5692 integrase family protein YP_003198472.1 1857181 D 485915 CDS YP_003198473.1 258405731 8419442 1859240..1859464 1 NC_013223.1 PFAM: Prophage CP4-57 regulatory; KEGG: gbm:Gbem_3477 phage transcriptional regulator, AlpA; phage transcriptional regulator, AlpA 1859464 8419442 Dret_1611 Desulfohalobium retbaense DSM 5692 phage transcriptional regulator, AlpA YP_003198473.1 1859240 D 485915 CDS YP_003198474.1 258405732 8419443 1859647..1862247 1 NC_013223.1 KEGG: nwi:Nwi_1258 hypothetical protein; hypothetical protein 1862247 8419443 Dret_1612 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198474.1 1859647 D 485915 CDS YP_003198475.1 258405733 8419444 complement(1862555..1863058) 1 NC_013223.1 hypothetical protein 1863058 8419444 Dret_1613 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198475.1 1862555 R 485915 CDS YP_003198476.1 258405734 8419445 1863367..1863888 1 NC_013223.1 KEGG: pne:Pnec_1608 single-strand binding protein; hypothetical protein 1863888 8419445 Dret_1614 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198476.1 1863367 D 485915 CDS YP_003198477.1 258405735 8419446 1863974..1864270 1 NC_013223.1 hypothetical protein 1864270 8419446 Dret_1615 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198477.1 1863974 D 485915 CDS YP_003198478.1 258405736 8419447 1864286..1865017 1 NC_013223.1 KEGG: sat:SYN_00492 putative cytoplasmic protein; hypothetical protein 1865017 8419447 Dret_1616 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198478.1 1864286 D 485915 CDS YP_003198479.1 258405737 8419448 1865049..1865249 1 NC_013223.1 KEGG: dol:Dole_2708 hypothetical protein; hypothetical protein 1865249 8419448 Dret_1617 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198479.1 1865049 D 485915 CDS YP_003198480.1 258405738 8419449 1865300..1865791 1 NC_013223.1 KEGG: elf:LF82_p102 hypothetical protein; hypothetical protein 1865791 8419449 Dret_1618 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198480.1 1865300 D 485915 CDS YP_003198481.1 258405739 8419450 1865804..1866769 1 NC_013223.1 SMART: AAA ATPase; KEGG: abm:ABSDF2510 putative bacteriophage protein; ATPase AAA 1866769 8419450 Dret_1619 Desulfohalobium retbaense DSM 5692 ATPase AAA YP_003198481.1 1865804 D 485915 CDS YP_003198482.1 258405740 8419451 1867120..1867356 1 NC_013223.1 KEGG: sat:SYN_03173 transposase; hypothetical protein 1867356 8419451 Dret_1620 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198482.1 1867120 D 485915 CDS YP_003198483.1 258405741 8419452 1867979..1868671 1 NC_013223.1 hypothetical protein 1868671 8419452 Dret_1621 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198483.1 1867979 D 485915 CDS YP_003198484.1 258405742 8419453 1869714..1872056 1 NC_013223.1 KEGG: tgr:Tgr7_2442 hypothetical protein; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR- associated helicase Cas3, Anaes-subtype; PFAM: helicase domain protein; SMART: helicase domain protein; DEAD-like helicase; CRISPR-associated helicase Cas3 1872056 8419453 Dret_1622 Desulfohalobium retbaense DSM 5692 CRISPR-associated helicase Cas3 YP_003198484.1 1869714 D 485915 CDS YP_003198485.1 258405743 8419454 1872049..1874406 1 NC_013223.1 KEGG: tgr:Tgr7_2441 hypothetical protein; hypothetical protein 1874406 8419454 Dret_1623 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198485.1 1872049 D 485915 CDS YP_003198486.1 258405744 8419455 1874399..1875382 1 NC_013223.1 PFAM: CRISPR-associated protein GSU0053; KEGG: tgr:Tgr7_2440 hypothetical protein; CRISPR-associated protein 1875382 8419455 Dret_1624 Desulfohalobium retbaense DSM 5692 CRISPR-associated protein YP_003198486.1 1874399 D 485915 CDS YP_003198487.1 258405745 8419456 1875386..1876822 1 NC_013223.1 KEGG: tgr:Tgr7_2439 hypothetical protein; hypothetical protein 1876822 8419456 Dret_1625 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198487.1 1875386 D 485915 CDS YP_003198488.1 258405746 8419457 1877522..1877671 1 NC_013223.1 hypothetical protein 1877671 8419457 Dret_1626 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198488.1 1877522 D 485915 CDS YP_003198489.1 258405747 8419458 complement(1877730..1878395) 1 NC_013223.1 PFAM: nuclease (SNase domain protein); Excalibur domain protein; SMART: nuclease (SNase domain protein); KEGG: dma:DMR_41750 putative nuclease; nuclease (SNase domain-containing protein) 1878395 8419458 Dret_1627 Desulfohalobium retbaense DSM 5692 nuclease (SNase domain-containing protein) YP_003198489.1 1877730 R 485915 CDS YP_003198490.1 258405748 8419459 complement(1878376..1878603) 1 NC_013223.1 hypothetical protein 1878603 8419459 Dret_1628 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198490.1 1878376 R 485915 CDS YP_003198491.1 258405749 8419460 complement(1878674..1878874) 1 NC_013223.1 hypothetical protein 1878874 8419460 Dret_1629 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198491.1 1878674 R 485915 CDS YP_003198492.1 258405750 8419461 complement(1879245..1879451) 1 NC_013223.1 KEGG: neu:NE0392 hypothetical protein; hypothetical protein 1879451 8419461 Dret_1630 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198492.1 1879245 R 485915 CDS YP_003198493.1 258405751 8419462 1879606..1880397 1 NC_013223.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3021 nitroreductase family protein; nitroreductase 1880397 8419462 Dret_1631 Desulfohalobium retbaense DSM 5692 nitroreductase YP_003198493.1 1879606 D 485915 CDS YP_003198494.1 258405752 8419463 1880895..1881191 1 NC_013223.1 KEGG: bpe:BP2183 hypothetical protein; hypothetical protein 1881191 8419463 Dret_1632 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198494.1 1880895 D 485915 CDS YP_003198495.1 258405753 8419464 complement(1881291..1884386) 1 NC_013223.1 KEGG: gur:Gura_0766 tetratricopeptide TPR_4; hypothetical protein 1884386 8419464 Dret_1633 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198495.1 1881291 R 485915 CDS YP_003198496.1 258405754 8419465 1884725..1885141 1 NC_013223.1 hypothetical protein 1885141 8419465 Dret_1634 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198496.1 1884725 D 485915 CDS YP_003198497.1 258405755 8419466 1885352..1885876 1 NC_013223.1 KEGG: sat:SYN_03033 putative cytoplasmic protein; putative cytoplasmic protein 1885876 8419466 Dret_1635 Desulfohalobium retbaense DSM 5692 putative cytoplasmic protein YP_003198497.1 1885352 D 485915 CDS YP_003198498.1 258405756 8419467 1886190..1886333 1 NC_013223.1 PFAM: Desulfoferrodoxin Dfx domain protein; KEGG: ppd:Ppro_1133 desulfoferrodoxin; desulfoferrodoxin Dfx domain-containing protein 1886333 8419467 Dret_1636 Desulfohalobium retbaense DSM 5692 desulfoferrodoxin Dfx domain-containing protein YP_003198498.1 1886190 D 485915 CDS YP_003198499.1 258405757 8419468 1886407..1886625 1 NC_013223.1 PFAM: Dissimilatory sulfite reductase D; KEGG: dat:HRM2_42380 DsrD; dissimilatory sulfite reductase D 1886625 8419468 Dret_1637 Desulfohalobium retbaense DSM 5692 dissimilatory sulfite reductase D YP_003198499.1 1886407 D 485915 CDS YP_003198500.1 258405758 8419469 complement(1886714..1887235) 1 NC_013223.1 KEGG: aeh:Mlg_1164 hypothetical protein; hypothetical protein 1887235 8419469 Dret_1638 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198500.1 1886714 R 485915 CDS YP_003198501.1 258405759 8419470 1887366..1889159 1 NC_013223.1 PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dde:Dde_0310 CBS; Cl- channel voltage-gated family protein 1889159 8419470 Dret_1639 Desulfohalobium retbaense DSM 5692 Cl- channel voltage-gated family protein YP_003198501.1 1887366 D 485915 CDS YP_003198502.1 258405760 8419471 complement(1889336..1890910) 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_2713 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1890910 8419471 Dret_1640 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003198502.1 1889336 R 485915 CDS YP_003198503.1 258405761 8419472 complement(1890907..1891827) 1 NC_013223.1 PFAM: protein of unknown function DUF362; KEGG: dvm:DvMF_2714 protein of unknown function DUF362; hypothetical protein 1891827 8419472 Dret_1641 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198503.1 1890907 R 485915 CDS YP_003198504.1 258405762 8419473 complement(1891944..1893422) 1 NC_013223.1 KEGG: dde:Dde_3125 hypothetical protein; hypothetical protein 1893422 8419473 Dret_1642 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198504.1 1891944 R 485915 CDS YP_003198505.1 258405763 8419474 complement(1893488..1894171) 1 NC_013223.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dma:DMR_38640 Crp family transcriptional regulator; CarD family transcriptional regulator 1894171 8419474 Dret_1643 Desulfohalobium retbaense DSM 5692 CarD family transcriptional regulator YP_003198505.1 1893488 R 485915 CDS YP_003198506.1 258405764 8419475 1894803..1895297 1 NC_013223.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dvl:Dvul_0940 rubrerythrin; rubrerythrin 1895297 8419475 Dret_1644 Desulfohalobium retbaense DSM 5692 rubrerythrin YP_003198506.1 1894803 D 485915 CDS YP_003198507.1 258405765 8419476 complement(1895416..1896177) 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbt:BBta_6457 ABC transporter ATP-binding protein; ABC transporter 1896177 8419476 Dret_1645 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003198507.1 1895416 R 485915 CDS YP_003198508.1 258405766 8419477 complement(1896390..1897169) 1 NC_013223.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3788 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1897169 8419477 Dret_1646 Desulfohalobium retbaense DSM 5692 binding-protein-dependent transport system inner membrane protein YP_003198508.1 1896390 R 485915 CDS YP_003198509.1 258405767 8419478 complement(1897174..1898148) 1 NC_013223.1 KEGG: pfo:Pfl01_4931 putative sulfonate/nitrate transport system substrate-binding protein; putative sulfonate/nitrate transport system substrate-binding protein 1898148 8419478 Dret_1647 Desulfohalobium retbaense DSM 5692 putative sulfonate/nitrate transport system substrate-binding protein YP_003198509.1 1897174 R 485915 CDS YP_003198510.1 258405768 8419479 complement(1898304..1901834) 1 NC_013223.1 KEGG: dol:Dole_3272 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAC repeat-containing protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; multi-sensor hybrid histidine kinase 1901834 8419479 Dret_1648 Desulfohalobium retbaense DSM 5692 multi-sensor hybrid histidine kinase YP_003198510.1 1898304 R 485915 CDS YP_003198511.1 258405769 8419480 complement(1902558..1903382) 1 NC_013223.1 KEGG: sfu:Sfum_3174 hypothetical protein; hypothetical protein 1903382 8419480 Dret_1649 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198511.1 1902558 R 485915 CDS YP_003198512.1 258405770 8419481 1903754..1904224 1 NC_013223.1 KEGG: gsu:GSU0472 hypothetical protein; hypothetical protein 1904224 8419481 Dret_1650 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198512.1 1903754 D 485915 CDS YP_003198513.1 258405771 8419482 complement(1904379..1904756) 1 NC_013223.1 KEGG: dat:HRM2_48580 hypothetical protein; hypothetical protein 1904756 8419482 Dret_1651 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198513.1 1904379 R 485915 CDS YP_003198514.1 258405772 8419483 1904891..1906147 1 NC_013223.1 PFAM: Tetratricopeptide TPR_4; TPR repeat- containing protein; SMART: Tetratricopeptide repeat; KEGG: dde:Dde_2157 TPR repeat-containing protein; hypothetical protein 1906147 8419483 Dret_1652 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198514.1 1904891 D 485915 CDS YP_003198515.1 258405773 8419484 1906213..1907046 1 NC_013223.1 KEGG: dde:Dde_2152 hypothetical protein; hypothetical protein 1907046 8419484 Dret_1653 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198515.1 1906213 D 485915 CDS YP_003198516.1 258405774 8419485 1907046..1908488 1 NC_013223.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_2153 transport protein TolQ-like; MotA/TolQ/ExbB proton channel 1908488 8419485 Dret_1654 Desulfohalobium retbaense DSM 5692 MotA/TolQ/ExbB proton channel YP_003198516.1 1907046 D 485915 CDS YP_003198517.1 258405775 8419486 1908478..1909134 1 NC_013223.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dal:Dalk_3682 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1909134 8419486 Dret_1655 Desulfohalobium retbaense DSM 5692 MotA/TolQ/ExbB proton channel YP_003198517.1 1908478 D 485915 CDS YP_003198518.1 258405776 8419487 1909121..1909549 1 NC_013223.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dde:Dde_2155 biopolymer transport protein (ExbD2); biopolymer transport protein ExbD/TolR 1909549 8419487 Dret_1656 Desulfohalobium retbaense DSM 5692 biopolymer transport protein ExbD/TolR YP_003198518.1 1909121 D 485915 CDS YP_003198519.1 258405777 8419488 1909546..1910259 1 NC_013223.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: dds:Ddes_1461 TonB family protein; TonB family protein 1910259 8419488 Dret_1657 Desulfohalobium retbaense DSM 5692 TonB family protein YP_003198519.1 1909546 D 485915 CDS YP_003198520.1 258405778 8419489 complement(1910420..1911238) 1 NC_013223.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: dde:Dde_0435 glycerophosphoryl diester phosphodiesterase family protein; glycerophosphoryl diester phosphodiesterase 1911238 8419489 Dret_1658 Desulfohalobium retbaense DSM 5692 glycerophosphoryl diester phosphodiesterase YP_003198520.1 1910420 R 485915 CDS YP_003198521.1 258405779 8419490 complement(1911242..1913599) 1 NC_013223.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: sat:SYN_01404 general secretion pathway protein E; type II secretion system protein E 1913599 8419490 Dret_1659 Desulfohalobium retbaense DSM 5692 type II secretion system protein E YP_003198521.1 1911242 R 485915 CDS YP_003198522.1 258405780 8419491 complement(1914099..1915088) 1 NC_013223.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1915088 8419491 Dret_1660 Desulfohalobium retbaense DSM 5692 ketol-acid reductoisomerase YP_003198522.1 1914099 R 485915 CDS YP_003198523.1 258405781 8419492 complement(1915259..1915747) 1 NC_013223.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 1915747 ilvH 8419492 ilvH Desulfohalobium retbaense DSM 5692 acetolactate synthase 3 regulatory subunit YP_003198523.1 1915259 R 485915 CDS YP_003198524.1 258405782 8419493 complement(1915785..1917479) 1 NC_013223.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: dvm:DvMF_0153 acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase large subunit 1917479 8419493 Dret_1662 Desulfohalobium retbaense DSM 5692 acetolactate synthase large subunit YP_003198524.1 1915785 R 485915 CDS YP_003198525.1 258405783 8419494 complement(1917482..1917712) 1 NC_013223.1 KEGG: dma:DMR_21820 hypothetical protein; hypothetical protein 1917712 8419494 Dret_1663 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198525.1 1917482 R 485915 CDS YP_003198526.1 258405784 8419495 complement(1917724..1918041) 1 NC_013223.1 PFAM: protein of unknown function DUF167; KEGG: dvl:Dvul_1694 hypothetical protein; hypothetical protein 1918041 8419495 Dret_1664 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198526.1 1917724 R 485915 CDS YP_003198527.1 258405785 8419496 complement(1918092..1918391) 1 NC_013223.1 PFAM: protein of unknown function YGGT; KEGG: dvm:DvMF_0149 protein of unknown function YGGT; hypothetical protein 1918391 8419496 Dret_1665 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198527.1 1918092 R 485915 CDS YP_003198528.1 258405786 8419497 complement(1918519..1919229) 1 NC_013223.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dma:DMR_21780 haloacid dehalogenase-like hydrolase family protein; HAD-superfamily hydrolase 1919229 8419497 Dret_1666 Desulfohalobium retbaense DSM 5692 HAD-superfamily hydrolase YP_003198528.1 1918519 R 485915 CDS YP_003198529.1 258405787 8419498 complement(1919246..1920895) 1 NC_013223.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sfu:Sfum_0870 acyl-CoA synthetase; AMP-binding domain-containing protein 1920895 8419498 Dret_1667 Desulfohalobium retbaense DSM 5692 AMP-binding domain-containing protein YP_003198529.1 1919246 R 485915 CDS YP_003198530.1 258405788 8419499 complement(1920951..1921517) 1 NC_013223.1 PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sfu:Sfum_0869 transcriptional regulator, XRE family; XRE family transcriptional regulator 1921517 8419499 Dret_1668 Desulfohalobium retbaense DSM 5692 XRE family transcriptional regulator YP_003198530.1 1920951 R 485915 CDS YP_003198531.1 258405789 8419500 complement(1921655..1922449) 1 NC_013223.1 KEGG: dvl:Dvul_1698 hypothetical protein; hypothetical protein 1922449 8419500 Dret_1669 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198531.1 1921655 R 485915 CDS YP_003198532.1 258405790 8419501 complement(1922711..1923463) 1 NC_013223.1 hypothetical protein 1923463 8419501 Dret_1670 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198532.1 1922711 R 485915 CDS YP_003198533.1 258405791 8419502 1923600..1923839 1 NC_013223.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dma:DMR_21750 sec-independent protein translocase protein TatA/E; twin-arginine translocation protein, TatA/E family subunit 1923839 8419502 Dret_1671 Desulfohalobium retbaense DSM 5692 twin-arginine translocation protein, TatA/E family subunit YP_003198533.1 1923600 D 485915 CDS YP_003198534.1 258405792 8419503 complement(1924220..1925161) 1 NC_013223.1 KEGG: dde:Dde_2178 putative lipoprotein; hypothetical protein 1925161 8419503 Dret_1672 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198534.1 1924220 R 485915 CDS YP_003198535.1 258405793 8419504 complement(1925172..1926098) 1 NC_013223.1 KEGG: dde:Dde_2180 hypothetical protein; hypothetical protein 1926098 8419504 Dret_1673 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198535.1 1925172 R 485915 CDS YP_003198536.1 258405794 8419505 complement(1926310..1927254) 1 NC_013223.1 KEGG: dde:Dde_1784 tRNA delta(2)- isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 1927254 8419505 Dret_1674 Desulfohalobium retbaense DSM 5692 tRNA delta(2)-isopentenylpyrophosphate transferase YP_003198536.1 1926310 R 485915 CDS YP_003198537.1 258405795 8419506 complement(1927285..1927782) 1 NC_013223.1 KEGG: dvm:DvMF_0173 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 1927782 8419506 Dret_1675 Desulfohalobium retbaense DSM 5692 pantetheine-phosphate adenylyltransferase YP_003198537.1 1927285 R 485915 CDS YP_003198538.1 258405796 8419507 complement(1927767..1928327) 1 NC_013223.1 KEGG: dvm:DvMF_0172 methyltransferase; TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; methyltransferase 1928327 8419507 Dret_1676 Desulfohalobium retbaense DSM 5692 methyltransferase YP_003198538.1 1927767 R 485915 CDS YP_003198539.1 258405797 8419508 complement(1928613..1930247) 1 NC_013223.1 PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: sat:SYN_00166 metallo-beta-lactamase protein; beta-lactamase domain-containing protein 1930247 8419508 Dret_1677 Desulfohalobium retbaense DSM 5692 beta-lactamase domain-containing protein YP_003198539.1 1928613 R 485915 CDS YP_003198540.1 258405798 8419509 complement(1930226..1931182) 1 NC_013223.1 SMART: GGDEF domain containing protein; KEGG: mxa:MXAN_5791 response regulator/GGDEF domain- containing protein; response regulator receiver modulated diguanylate cyclase 1931182 8419509 Dret_1678 Desulfohalobium retbaense DSM 5692 response regulator receiver modulated diguanylate cyclase YP_003198540.1 1930226 R 485915 CDS YP_003198541.1 258405799 8419510 1931515..1932342 1 NC_013223.1 PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; KEGG: dvm:DvMF_3162 Smr protein/MutS2; Smr protein/MutS2 1932342 8419510 Dret_1679 Desulfohalobium retbaense DSM 5692 Smr protein/MutS2 YP_003198541.1 1931515 D 485915 CDS YP_003198542.1 258405800 8419511 1932512..1933846 1 NC_013223.1 KEGG: dde:Dde_0560 signal recognition particle- docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 1933846 8419511 Dret_1680 Desulfohalobium retbaense DSM 5692 signal recognition particle-docking protein FtsY YP_003198542.1 1932512 D 485915 CDS YP_003198543.1 258405801 8419512 complement(1934044..1934901) 1 NC_013223.1 PFAM: pseudouridine synthase; KEGG: dde:Dde_0975 pseudouridylate synthase 23S RNA- specific-like; pseudouridine synthase 1934901 8419512 Dret_1681 Desulfohalobium retbaense DSM 5692 pseudouridine synthase YP_003198543.1 1934044 R 485915 CDS YP_003198544.1 258405802 8419513 1934976..1935353 1 NC_013223.1 PFAM: protein of unknown function DUF814; KEGG: scl:sce0899 putative fibronectin-binding protein-like protein A; hypothetical protein 1935353 8419513 Dret_1682 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198544.1 1934976 D 485915 CDS YP_003198545.1 258405803 8419514 1935443..1936117 1 NC_013223.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1936117 8419514 Dret_1683 Desulfohalobium retbaense DSM 5692 adenylate kinase YP_003198545.1 1935443 D 485915 CDS YP_003198546.1 258405804 8419515 1936238..1937092 1 NC_013223.1 PFAM: protein of unknown function DUF178; KEGG: dma:DMR_16380 hypothetical protein; hypothetical protein 1937092 8419515 Dret_1684 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198546.1 1936238 D 485915 CDS YP_003198547.1 258405805 8419516 complement(1937215..1937478) 1 NC_013223.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1937478 rpsT 8419516 rpsT Desulfohalobium retbaense DSM 5692 30S ribosomal protein S20 YP_003198547.1 1937215 R 485915 CDS YP_003198548.1 258405806 8419517 complement(1937713..1939803) 1 NC_013223.1 KEGG: dma:DMR_20850 glycyl-tRNA synthetase beta chain; TIGRFAM: glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta 1939803 8419517 Dret_1686 Desulfohalobium retbaense DSM 5692 glycyl-tRNA synthetase subunit beta YP_003198548.1 1937713 R 485915 CDS YP_003198549.1 258405807 8419518 complement(1939848..1940720) 1 NC_013223.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1940720 glyQ 8419518 glyQ Desulfohalobium retbaense DSM 5692 glycyl-tRNA synthetase subunit alpha YP_003198549.1 1939848 R 485915 CDS YP_003198550.1 258405808 8419519 complement(1940937..1941695) 1 NC_013223.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: dde:Dde_2035 DNA repair protein RecO; DNA repair protein RecO 1941695 8419519 Dret_1688 Desulfohalobium retbaense DSM 5692 DNA repair protein RecO YP_003198550.1 1940937 R 485915 CDS YP_003198551.1 258405809 8419520 complement(1941761..1942789) 1 NC_013223.1 KEGG: dde:Dde_2036 XRE family transcriptional regulator; XRE family transcriptional regulator 1942789 8419520 Dret_1689 Desulfohalobium retbaense DSM 5692 XRE family transcriptional regulator YP_003198551.1 1941761 R 485915 CDS YP_003198552.1 258405810 8419521 complement(1942886..1943821) 1 NC_013223.1 PFAM: SurA domain; PpiC-type peptidyl-prolyl cis- trans isomerase; KEGG: dma:DMR_20800 putative peptidyl-prolyl cis- trans isomerase; SurA domain-containing protein 1943821 8419521 Dret_1690 Desulfohalobium retbaense DSM 5692 SurA domain-containing protein YP_003198552.1 1942886 R 485915 CDS YP_003198553.1 258405811 8419522 complement(1943933..1947394) 1 NC_013223.1 KEGG: dma:DMR_20780 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase domain protein; transcription factor CarD; TRCF domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; transcription-repair coupling factor 1947394 8419522 Dret_1691 Desulfohalobium retbaense DSM 5692 transcription-repair coupling factor YP_003198553.1 1943933 R 485915 CDS YP_003198554.1 258405812 8419523 1948046..1948282 1 NC_013223.1 KEGG: dvm:DvMF_0283 hypothetical protein; hypothetical protein 1948282 8419523 Dret_1692 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198554.1 1948046 D 485915 CDS YP_003198555.1 258405813 8419524 complement(1948622..1949959) 1 NC_013223.1 KEGG: dma:DMR_27530 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 1949959 8419524 Dret_1693 Desulfohalobium retbaense DSM 5692 nucleotide sugar dehydrogenase YP_003198555.1 1948622 R 485915 CDS YP_003198556.1 258405814 8419525 complement(1950087..1953977) 1 NC_013223.1 KEGG: dat:HRM2_27650 PilY1; Tfp pilus assembly protein tip-associated adhesin PilY1-like protein 1953977 8419525 Dret_1694 Desulfohalobium retbaense DSM 5692 Tfp pilus assembly protein tip-associated adhesin PilY1-like protein YP_003198556.1 1950087 R 485915 CDS YP_003198557.1 258405815 8419526 complement(1954003..1954338) 1 NC_013223.1 hypothetical protein 1954338 8419526 Dret_1695 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198557.1 1954003 R 485915 CDS YP_003198558.1 258405816 8419527 complement(1954359..1955006) 1 NC_013223.1 KEGG: dat:HRM2_27660 PilX; hypothetical protein 1955006 8419527 Dret_1696 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198558.1 1954359 R 485915 CDS YP_003198559.1 258405817 8419528 complement(1955003..1955419) 1 NC_013223.1 KEGG: sat:SYN_01760 hypothetical protein; hypothetical protein 1955419 8419528 Dret_1697 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198559.1 1955003 R 485915 CDS YP_003198560.1 258405818 8419529 complement(1955392..1956291) 1 NC_013223.1 KEGG: shn:Shewana3_3131 prepilin-type cleavage/methylation-like protein; hypothetical protein 1956291 8419529 Dret_1698 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198560.1 1955392 R 485915 CDS YP_003198561.1 258405819 8419530 complement(1956295..1956651) 1 NC_013223.1 hypothetical protein 1956651 8419530 Dret_1699 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198561.1 1956295 R 485915 CDS YP_003198562.1 258405820 8419531 1957066..1957791 1 NC_013223.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1957791 8419531 Dret_1700 Desulfohalobium retbaense DSM 5692 pyridoxine 5'-phosphate synthase YP_003198562.1 1957066 D 485915 CDS YP_003198563.1 258405821 8419532 1958120..1958503 1 NC_013223.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: dvm:DvMF_0280 holo-acyl-carrier-protein synthase; holo-ACP synthase 1958503 8419532 Dret_1701 Desulfohalobium retbaense DSM 5692 holo-ACP synthase YP_003198563.1 1958120 D 485915 CDS YP_003198564.1 258405822 8419533 1958602..1960152 1 NC_013223.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF- family domain protein; KEGG: dma:DMR_17920 hypothetical protein; carbohydrate kinase 1960152 8419533 Dret_1702 Desulfohalobium retbaense DSM 5692 carbohydrate kinase YP_003198564.1 1958602 D 485915 CDS YP_003198565.1 258405823 8419534 1960136..1960582 1 NC_013223.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: sfu:Sfum_2202 CBS domain containing membrane protein; hypothetical protein 1960582 8419534 Dret_1703 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198565.1 1960136 D 485915 CDS YP_003198566.1 258405824 8419535 1960589..1961095 1 NC_013223.1 PFAM: protein of unknown function UPF0079; KEGG: dde:Dde_2047 hypothetical protein; hypothetical protein 1961095 8419535 Dret_1704 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198566.1 1960589 D 485915 CDS YP_003198567.1 258405825 8419536 1961174..1962427 1 NC_013223.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1962427 8419536 Dret_1705 Desulfohalobium retbaense DSM 5692 aspartate kinase YP_003198567.1 1961174 D 485915 CDS YP_003198568.1 258405826 8419537 1962424..1964055 1 NC_013223.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; KEGG: dma:DMR_17880 2-isopropylmalate synthase/homocitrate synthase family protein; putative alpha-isopropylmalate/homocitrate synthase family transferase 1964055 8419537 Dret_1706 Desulfohalobium retbaense DSM 5692 putative alpha-isopropylmalate/homocitrate synthase family transferase YP_003198568.1 1962424 D 485915 CDS YP_003198569.1 258405827 8419538 1964052..1964903 1 NC_013223.1 PFAM: beta-lactamase domain protein; KEGG: tau:Tola_0320 beta-lactamase domain protein; beta-lactamase domain-containing protein 1964903 8419538 Dret_1707 Desulfohalobium retbaense DSM 5692 beta-lactamase domain-containing protein YP_003198569.1 1964052 D 485915 CDS YP_003198570.1 258405828 8419539 complement(1964927..1965700) 1 NC_013223.1 KEGG: dvl:Dvul_1336 putative carboxylesterase; putative carboxylesterase 1965700 8419539 Dret_1708 Desulfohalobium retbaense DSM 5692 putative carboxylesterase YP_003198570.1 1964927 R 485915 CDS YP_003198571.1 258405829 8419540 complement(1965726..1967087) 1 NC_013223.1 PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; protein of unknown function DUF1566; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: dde:Dde_3468 serine/threonine protein kinase; serine/threonine protein kinase 1967087 8419540 Dret_1709 Desulfohalobium retbaense DSM 5692 serine/threonine protein kinase YP_003198571.1 1965726 R 485915 CDS YP_003198572.1 258405830 8419541 complement(1967208..1967933) 1 NC_013223.1 PFAM: metallophosphoesterase; KEGG: sfu:Sfum_2718 metallophosphoesterase; metallophosphoesterase 1967933 8419541 Dret_1710 Desulfohalobium retbaense DSM 5692 metallophosphoesterase YP_003198572.1 1967208 R 485915 CDS YP_003198573.1 258405831 8419542 1968104..1968484 1 NC_013223.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: dma:DMR_17090 protein CrcB homolog; CrcB protein 1968484 8419542 Dret_1711 Desulfohalobium retbaense DSM 5692 CrcB protein YP_003198573.1 1968104 D 485915 CDS YP_003198574.1 258405832 8419543 1968689..1969327 1 NC_013223.1 PFAM: CI repressor; KEGG: dvl:Dvul_1413 putative phage repressor; CI repressor 1969327 8419543 Dret_1712 Desulfohalobium retbaense DSM 5692 CI repressor YP_003198574.1 1968689 D 485915 CDS YP_003198575.1 258405833 8419544 complement(1969336..1969860) 1 NC_013223.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dvl:Dvul_1234 PfpI family intracellular peptidase; Pfpi family intracellular protease 1969860 8419544 Dret_1713 Desulfohalobium retbaense DSM 5692 Pfpi family intracellular protease YP_003198575.1 1969336 R 485915 CDS YP_003198576.1 258405834 8419545 1970068..1970394 1 NC_013223.1 KEGG: dma:DMR_03410 hypothetical protein; hypothetical protein 1970394 8419545 Dret_1714 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198576.1 1970068 D 485915 CDS YP_003198577.1 258405835 8419546 1970492..1970977 1 NC_013223.1 KEGG: dde:Dde_0060 hypothetical protein; hypothetical protein 1970977 8419546 Dret_1715 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198577.1 1970492 D 485915 CDS YP_003198578.1 258405836 8419547 1971111..1971842 1 NC_013223.1 KEGG: noc:Noc_A0014 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parB-like partition protein 1971842 8419547 Dret_1716 Desulfohalobium retbaense DSM 5692 parB-like partition protein YP_003198578.1 1971111 D 485915 CDS YP_003198579.1 258405837 8419548 complement(1972104..1972709) 1 NC_013223.1 KEGG: hypothetical protein LOC687931; hypothetical protein 1972709 8419548 Dret_1717 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198579.1 1972104 R 485915 CDS YP_003198580.1 258405838 8419549 complement(1973194..1973307) 1 NC_013223.1 hypothetical protein 1973307 8419549 Dret_1718 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198580.1 1973194 R 485915 CDS YP_003198581.1 258405839 8419555 complement(1978983..1980374) 1 NC_013223.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 1980374 asnC 8419555 asnC Desulfohalobium retbaense DSM 5692 asparaginyl-tRNA synthetase YP_003198581.1 1978983 R 485915 CDS YP_003198582.1 258405840 8419556 complement(1980489..1982825) 1 NC_013223.1 KEGG: dde:Dde_1519 replication restart DNA helicase PriA; TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; primosomal protein N' 1982825 8419556 Dret_1720 Desulfohalobium retbaense DSM 5692 primosomal protein N' YP_003198582.1 1980489 R 485915 CDS YP_003198583.1 258405841 8419557 complement(1982825..1983589) 1 NC_013223.1 hypothetical protein 1983589 8419557 Dret_1721 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198583.1 1982825 R 485915 CDS YP_003198584.1 258405842 8419558 complement(1983589..1984455) 1 NC_013223.1 PFAM: Nucleotidyl transferase; KEGG: dma:DMR_25690 UTP--glucose-1-phosphate uridylyltransferase; nucleotidyl transferase 1984455 8419558 Dret_1722 Desulfohalobium retbaense DSM 5692 nucleotidyl transferase YP_003198584.1 1983589 R 485915 CDS YP_003198585.1 258405843 8419559 complement(1984923..1986275) 1 NC_013223.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1986275 glmM 8419559 glmM Desulfohalobium retbaense DSM 5692 phosphoglucosamine mutase YP_003198585.1 1984923 R 485915 CDS YP_003198586.1 258405844 8419560 complement(1986272..1987234) 1 NC_013223.1 PFAM: YbbR family protein; KEGG: dma:DMR_25710 hypothetical protein; hypothetical protein 1987234 8419560 Dret_1724 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198586.1 1986272 R 485915 CDS YP_003198587.1 258405845 8419561 complement(1987319..1988077) 1 NC_013223.1 PFAM: protein of unknown function DUF147; KEGG: dvl:Dvul_1785 hypothetical protein; hypothetical protein 1988077 8419561 Dret_1725 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198587.1 1987319 R 485915 CDS YP_003198588.1 258405846 8419562 complement(1988319..1989188) 1 NC_013223.1 KEGG: dde:Dde_1514 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 1989188 8419562 Dret_1726 Desulfohalobium retbaense DSM 5692 dihydropteroate synthase YP_003198588.1 1988319 R 485915 CDS YP_003198589.1 258405847 8419563 complement(1989185..1991095) 1 NC_013223.1 KEGG: dma:DMR_25740 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 1991095 8419563 Dret_1727 Desulfohalobium retbaense DSM 5692 ATP-dependent metalloprotease FtsH YP_003198589.1 1989185 R 485915 CDS YP_003198590.1 258405848 8419565 complement(1991351..1992763) 1 NC_013223.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 1992763 8419565 Dret_1728 Desulfohalobium retbaense DSM 5692 argininosuccinate lyase YP_003198590.1 1991351 R 485915 CDS YP_003198591.1 258405849 8419566 complement(1992853..1994076) 1 NC_013223.1 KEGG: dde:Dde_2531 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase; argininosuccinate synthase 1994076 8419566 Dret_1729 Desulfohalobium retbaense DSM 5692 argininosuccinate synthase YP_003198591.1 1992853 R 485915 CDS YP_003198592.1 258405850 8419567 complement(1994178..1994360) 1 NC_013223.1 hypothetical protein 1994360 8419567 Dret_1730 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198592.1 1994178 R 485915 CDS YP_003198593.1 258405851 8419568 complement(1994330..1995244) 1 NC_013223.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: dvm:DvMF_0046 ornithine carbamoyltransferase; ornithine carbamoyltransferase 1995244 8419568 Dret_1731 Desulfohalobium retbaense DSM 5692 ornithine carbamoyltransferase YP_003198593.1 1994330 R 485915 CDS YP_003198594.1 258405852 8419569 complement(1995353..1995787) 1 NC_013223.1 PFAM: protein of unknown function UPF0054; KEGG: dma:DMR_28860 hypothetical protein; hypothetical protein 1995787 8419569 Dret_1732 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198594.1 1995353 R 485915 CDS YP_003198595.1 258405853 8419570 complement(1995784..1996764) 1 NC_013223.1 PFAM: PhoH family protein; K Homology, type 1, subgroup; KEGG: dma:DMR_28840 PhoH-like protein; PhoH family protein 1996764 8419570 Dret_1733 Desulfohalobium retbaense DSM 5692 PhoH family protein YP_003198595.1 1995784 R 485915 CDS YP_003198596.1 258405854 8419571 complement(1997057..1998046) 1 NC_013223.1 KEGG: dde:Dde_0709 GTP cyclohydrolase subunit MoaA; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 1998046 8419571 Dret_1734 Desulfohalobium retbaense DSM 5692 molybdenum cofactor biosynthesis protein A YP_003198596.1 1997057 R 485915 CDS YP_003198597.1 258405855 8419572 complement(1998152..1999708) 1 NC_013223.1 PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: dma:DMR_28830 hypothetical protein; hypothetical protein 1999708 8419572 Dret_1735 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198597.1 1998152 R 485915 CDS YP_003198598.1 258405856 8419573 complement(1999822..2000184) 1 NC_013223.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: dvm:DvMF_0008 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 2000184 8419573 Dret_1736 Desulfohalobium retbaense DSM 5692 TraR/DksA family transcriptional regulator YP_003198598.1 1999822 R 485915 CDS YP_003198599.1 258405857 8419577 2000897..2001637 1 NC_013223.1 PFAM: Methyltransferase-16, putative; Methyltransferase type 12; KEGG: dvl:Dvul_1029 methyltransferase small; methyltransferase-16 2001637 8419577 Dret_1737 Desulfohalobium retbaense DSM 5692 methyltransferase-16 YP_003198599.1 2000897 D 485915 CDS YP_003198600.1 258405858 8419578 2001627..2003345 1 NC_013223.1 PFAM: protein of unknown function DUF181; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: dma:DMR_15900 hypothetical protein; hypothetical protein 2003345 8419578 Dret_1738 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198600.1 2001627 D 485915 CDS YP_003198601.1 258405859 8419579 2003540..2003857 1 NC_013223.1 KEGG: dma:DMR_15890 sulfite reductase gamma subunit; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; TusE/DsrC/DsvC family sulfur relay protein 2003857 8419579 Dret_1739 Desulfohalobium retbaense DSM 5692 TusE/DsrC/DsvC family sulfur relay protein YP_003198601.1 2003540 D 485915 CDS YP_003198602.1 258405860 8419580 2004101..2004466 1 NC_013223.1 KEGG: dvm:DvMF_0872 hypothetical protein; hypothetical protein 2004466 8419580 Dret_1740 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198602.1 2004101 D 485915 CDS YP_003198603.1 258405861 8419581 complement(2004495..2005322) 1 NC_013223.1 PFAM: glycosyl transferase family 2; KEGG: dol:Dole_0985 glycosyl transferase family protein; family 2 glycosyl transferase 2005322 8419581 Dret_1741 Desulfohalobium retbaense DSM 5692 family 2 glycosyl transferase YP_003198603.1 2004495 R 485915 CDS YP_003198604.1 258405862 8419582 2005333..2006448 1 NC_013223.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1656 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 2006448 8419582 Dret_1742 Desulfohalobium retbaense DSM 5692 group 1 glycosyl transferase YP_003198604.1 2005333 D 485915 CDS YP_003198605.1 258405863 8419583 2006445..2007188 1 NC_013223.1 PFAM: ApbE family lipoprotein; KEGG: dma:DMR_30660 hypothetical protein; hypothetical protein 2007188 8419583 Dret_1743 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198605.1 2006445 D 485915 CDS YP_003198606.1 258405864 8419584 complement(2007819..2008469) 1 NC_013223.1 TIGRFAM: thymidylate synthase, flavin-dependent; PFAM: thymidylate synthase complementing protein ThyX; KEGG: dat:HRM2_18050 ThyX; thymidylate synthase, flavin-dependent 2008469 8419584 Dret_1744 Desulfohalobium retbaense DSM 5692 thymidylate synthase, flavin-dependent YP_003198606.1 2007819 R 485915 CDS YP_003198607.1 258405865 8419585 complement(2008481..2009449) 1 NC_013223.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2009449 ruvB 8419585 ruvB Desulfohalobium retbaense DSM 5692 Holliday junction DNA helicase RuvB YP_003198607.1 2008481 R 485915 CDS YP_003198608.1 258405866 8419586 complement(2009446..2010060) 1 NC_013223.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2010060 ruvA 8419586 ruvA Desulfohalobium retbaense DSM 5692 Holliday junction DNA helicase RuvA YP_003198608.1 2009446 R 485915 CDS YP_003198609.1 258405867 8419587 complement(2010136..2010648) 1 NC_013223.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2010648 ruvC 8419587 ruvC Desulfohalobium retbaense DSM 5692 Holliday junction resolvase YP_003198609.1 2010136 R 485915 CDS YP_003198610.1 258405868 8419588 complement(2010667..2011416) 1 NC_013223.1 PFAM: protein of unknown function DUF28; KEGG: dvu:DVU2259 hypothetical protein; hypothetical protein 2011416 8419588 Dret_1748 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198610.1 2010667 R 485915 CDS YP_003198611.1 258405869 8419589 complement(2011571..2012170) 1 NC_013223.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dma:DMR_30870 ribosomal RNA large subunit methyltransferase J; ribosomal RNA methyltransferase RrmJ/FtsJ 2012170 8419589 Dret_1749 Desulfohalobium retbaense DSM 5692 ribosomal RNA methyltransferase RrmJ/FtsJ YP_003198611.1 2011571 R 485915 CDS YP_003198612.1 258405870 8419591 complement(2012483..2014843) 1 NC_013223.1 PFAM: Transketolase domain protein; Transketolase central region; KEGG: MGC69114; transketolase; K00615 transketolase; transketolase 2014843 8419591 Dret_1750 Desulfohalobium retbaense DSM 5692 transketolase YP_003198612.1 2012483 R 485915 CDS YP_003198613.1 258405871 8419592 2015257..2016435 1 NC_013223.1 TIGRFAM: TraB family protein; PFAM: TraB determinant protein; KEGG: dol:Dole_2685 TraB family protein; TraB family protein 2016435 8419592 Dret_1751 Desulfohalobium retbaense DSM 5692 TraB family protein YP_003198613.1 2015257 D 485915 CDS YP_003198614.1 258405872 8419593 2016677..2018170 1 NC_013223.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: sat:SYN_00178 superfamily II DNA/RNA helicase; DEAD/DEAH box helicase 2018170 8419593 Dret_1752 Desulfohalobium retbaense DSM 5692 DEAD/DEAH box helicase YP_003198614.1 2016677 D 485915 CDS YP_003198615.1 258405873 8419594 2018601..2018864 1 NC_013223.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1; RNP-1 like RNA-binding protein 2018864 8419594 Dret_1753 Desulfohalobium retbaense DSM 5692 RNP-1 like RNA-binding protein YP_003198615.1 2018601 D 485915 CDS YP_003198616.1 258405874 8419595 2019122..2019418 1 NC_013223.1 KEGG: dvm:DvMF_0606 hypothetical protein; hypothetical protein 2019418 8419595 Dret_1754 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198616.1 2019122 D 485915 CDS YP_003198617.1 258405875 8419596 2019643..2020818 1 NC_013223.1 PFAM: (Uracil-5)-methyltransferase; KEGG: psa:PST_2670 23S rRNA 5-methyluridine methyltransferase; (uracil-5)-methyltransferase 2020818 8419596 Dret_1755 Desulfohalobium retbaense DSM 5692 (uracil-5)-methyltransferase YP_003198617.1 2019643 D 485915 CDS YP_003198618.1 258405876 8419597 2020861..2022555 1 NC_013223.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_1725 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 2022555 8419597 Dret_1756 Desulfohalobium retbaense DSM 5692 AMP-dependent synthetase and ligase YP_003198618.1 2020861 D 485915 CDS YP_003198619.1 258405877 8419598 2022610..2022768 1 NC_013223.1 PFAM: protein of unknown function UPF0057; KEGG: pat:Patl_4140 hypothetical protein; hypothetical protein 2022768 8419598 Dret_1757 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198619.1 2022610 D 485915 CDS YP_003198620.1 258405878 8419599 complement(2023374..2025275) 1 NC_013223.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: dde:Dde_2200 1-deoxy-D-xylulose-5-phosphate synthase; deoxyxylulose-5-phosphate synthase 2025275 8419599 Dret_1758 Desulfohalobium retbaense DSM 5692 deoxyxylulose-5-phosphate synthase YP_003198620.1 2023374 R 485915 CDS YP_003198621.1 258405879 8419600 complement(2025346..2026224) 1 NC_013223.1 PFAM: Polyprenyl synthetase; KEGG: dde:Dde_2201 farnesyl-diphosphate synthase; polyprenyl synthetase 2026224 8419600 Dret_1759 Desulfohalobium retbaense DSM 5692 polyprenyl synthetase YP_003198621.1 2025346 R 485915 CDS YP_003198622.1 258405880 8419601 complement(2026205..2026477) 1 NC_013223.1 PFAM: Exonuclease VII small subunit; KEGG: dde:Dde_2202 exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit 2026477 8419601 Dret_1760 Desulfohalobium retbaense DSM 5692 Exonuclease VII small subunit YP_003198622.1 2026205 R 485915 CDS YP_003198623.1 258405881 8419602 complement(2026544..2027911) 1 NC_013223.1 KEGG: dma:DMR_24350 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 2027911 8419602 Dret_1761 Desulfohalobium retbaense DSM 5692 exodeoxyribonuclease VII large subunit YP_003198623.1 2026544 R 485915 CDS YP_003198624.1 258405882 8419603 complement(2028017..2029756) 1 NC_013223.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 2029756 8419603 Dret_1762 Desulfohalobium retbaense DSM 5692 prolyl-tRNA synthetase YP_003198624.1 2028017 R 485915 CDS YP_003198625.1 258405883 8419604 complement(2029759..2030331) 1 NC_013223.1 hypothetical protein 2030331 8419604 Dret_1763 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198625.1 2029759 R 485915 CDS YP_003198626.1 258405884 8419605 complement(2030353..2031477) 1 NC_013223.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2031477 ispG 8419605 ispG Desulfohalobium retbaense DSM 5692 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_003198626.1 2030353 R 485915 CDS YP_003198627.1 258405885 8419606 complement(2031544..2032224) 1 NC_013223.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dvm:DvMF_0181 phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase 2032224 8419606 Dret_1765 Desulfohalobium retbaense DSM 5692 phosphoadenosine phosphosulfate reductase YP_003198627.1 2031544 R 485915 CDS YP_003198628.1 258405886 8419607 complement(2032390..2032491) 1 NC_013223.1 KEGG: vha:VIBHAR_02897 hypothetical protein; hypothetical protein 2032491 8419607 Dret_1766 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198628.1 2032390 R 485915 CDS YP_003198629.1 258405887 8419608 complement(2032513..2033991) 1 NC_013223.1 PFAM: sodium:neurotransmitter symporter; KEGG: dat:HRM2_44940 Na+-dependent transporter; sodium:neurotransmitter symporter 2033991 8419608 Dret_1767 Desulfohalobium retbaense DSM 5692 sodium:neurotransmitter symporter YP_003198629.1 2032513 R 485915 CDS YP_003198630.1 258405888 8419609 2034584..2036176 1 NC_013223.1 PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: dvl:Dvul_2138 5-enolpyruvylshikimate-3- phosphate synthase-like protein; 3-phosphoshikimate 1- carboxyvinyltransferase 2036176 8419609 Dret_1768 Desulfohalobium retbaense DSM 5692 3-phosphoshikimate 1- carboxyvinyltransferase YP_003198630.1 2034584 D 485915 CDS YP_003198631.1 258405889 8419610 2036142..2036408 1 NC_013223.1 KEGG: dvm:DvMF_2890 hypothetical protein; hypothetical protein 2036408 8419610 Dret_1769 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198631.1 2036142 D 485915 CDS YP_003198632.1 258405890 8419611 2036413..2037858 1 NC_013223.1 PFAM: histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; histidine kinase A domain protein; KEGG: sat:SYN_01077 sensor proteinluxq; putative PAS/PAC sensor protein 2037858 8419611 Dret_1770 Desulfohalobium retbaense DSM 5692 putative PAS/PAC sensor protein YP_003198632.1 2036413 D 485915 CDS YP_003198633.1 258405891 8419612 2037864..2039789 1 NC_013223.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2039789 8419612 Dret_1771 Desulfohalobium retbaense DSM 5692 aconitate hydratase YP_003198633.1 2037864 D 485915 CDS YP_003198634.1 258405892 8419613 2040061..2041941 1 NC_013223.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dde:Dde_1407 peptidyl-prolyl cis-trans isomerse domain-containing protein; PpiC-type peptidyl-prolyl cis-trans isomerase 2041941 8419613 Dret_1772 Desulfohalobium retbaense DSM 5692 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003198634.1 2040061 D 485915 CDS YP_003198635.1 258405893 8419614 complement(2042072..2043265) 1 NC_013223.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: sfu:Sfum_0738 DNA-directed DNA polymerase; DNA-directed DNA polymerase 2043265 8419614 Dret_1773 Desulfohalobium retbaense DSM 5692 DNA-directed DNA polymerase YP_003198635.1 2042072 R 485915 CDS YP_003198636.1 258405894 8419615 2043436..2044155 1 NC_013223.1 PFAM: beta-lactamase domain protein; KEGG: dvl:Dvul_0081 beta-lactamase domain- containing protein; beta-lactamase domain-containing protein 2044155 8419615 Dret_1774 Desulfohalobium retbaense DSM 5692 beta-lactamase domain-containing protein YP_003198636.1 2043436 D 485915 CDS YP_003198637.1 258405895 8419616 complement(2044655..2045869) 1 NC_013223.1 TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: sat:SYN_02732 protein HipA; HipA N-terminal domain-containing protein 2045869 8419616 Dret_1775 Desulfohalobium retbaense DSM 5692 HipA N-terminal domain-containing protein YP_003198637.1 2044655 R 485915 CDS YP_003198638.1 258405896 8419617 complement(2045866..2046105) 1 NC_013223.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rhi:NGR234_237 Y4mF; XRE family transcriptional regulator 2046105 8419617 Dret_1776 Desulfohalobium retbaense DSM 5692 XRE family transcriptional regulator YP_003198638.1 2045866 R 485915 CDS YP_003198639.1 258405897 8419618 complement(2046261..2048171) 1 NC_013223.1 KEGG: lip:LI0701 nuclease subunit of the excinuclease complex; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; helix-hairpin- helix motif; UvrB/UvrC protein; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1; excinuclease ABC subunit C 2048171 8419618 Dret_1777 Desulfohalobium retbaense DSM 5692 excinuclease ABC subunit C YP_003198639.1 2046261 R 485915 CDS YP_003198640.1 258405898 8419619 complement(2048528..2049874) 1 NC_013223.1 PFAM: Peptidase M23; KEGG: dma:DMR_28080 peptidase M23B family protein; peptidase M23 2049874 8419619 Dret_1778 Desulfohalobium retbaense DSM 5692 peptidase M23 YP_003198640.1 2048528 R 485915 CDS YP_003198641.1 258405899 8419620 complement(2049947..2051278) 1 NC_013223.1 PFAM: peptidase M48 Ste24p; KEGG: dol:Dole_2972 peptidase M48 Ste24p; peptidase M48 Ste24p 2051278 8419620 Dret_1779 Desulfohalobium retbaense DSM 5692 peptidase M48 Ste24p YP_003198641.1 2049947 R 485915 CDS YP_003198642.1 258405900 8419621 complement(2051462..2051926) 1 NC_013223.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: pca:Pcar_1772 protein-tyrosine-phosphatase; protein tyrosine phosphatase 2051926 8419621 Dret_1780 Desulfohalobium retbaense DSM 5692 protein tyrosine phosphatase YP_003198642.1 2051462 R 485915 CDS YP_003198643.1 258405901 8419622 complement(2052055..2052378) 1 NC_013223.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: dma:DMR_20120 hypothetical protein; Carboxymuconolactone decarboxylase 2052378 8419622 Dret_1781 Desulfohalobium retbaense DSM 5692 Carboxymuconolactone decarboxylase YP_003198643.1 2052055 R 485915 CDS YP_003198644.1 258405902 8419623 complement(2052779..2053018) 1 NC_013223.1 TIGRFAM: redox-active disulfide protein 2; KEGG: dal:Dalk_4732 redox-active disulfide protein 2; redox-active disulfide protein 2 2053018 8419623 Dret_1782 Desulfohalobium retbaense DSM 5692 redox-active disulfide protein 2 YP_003198644.1 2052779 R 485915 CDS YP_003198645.1 258405903 8419624 complement(2053228..2054316) 1 NC_013223.1 PFAM: permease; KEGG: dal:Dalk_4734 permease; permease 2054316 8419624 Dret_1783 Desulfohalobium retbaense DSM 5692 permease YP_003198645.1 2053228 R 485915 CDS YP_003198646.1 258405904 8419625 complement(2054439..2054783) 1 NC_013223.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: dps:DP0944 ArsR-family transcription regulator; ArsR family transcriptional regulator 2054783 8419625 Dret_1784 Desulfohalobium retbaense DSM 5692 ArsR family transcriptional regulator YP_003198646.1 2054439 R 485915 CDS YP_003198647.1 258405905 8419626 complement(2055086..2056009) 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dma:DMR_41050 hypothetical membrane protein; 4Fe-4S ferredoxin 2056009 8419626 Dret_1785 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003198647.1 2055086 R 485915 CDS YP_003198648.1 258405906 8419627 complement(2056010..2056153) 1 NC_013223.1 hypothetical protein 2056153 8419627 Dret_1786 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198648.1 2056010 R 485915 CDS YP_003198649.1 258405907 8419628 complement(2056156..2056464) 1 NC_013223.1 hypothetical protein 2056464 8419628 Dret_1787 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198649.1 2056156 R 485915 CDS YP_003198650.1 258405908 8419629 complement(2056606..2057094) 1 NC_013223.1 PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_2114 thioredoxin family protein; redoxin domain-containing protein 2057094 8419629 Dret_1788 Desulfohalobium retbaense DSM 5692 redoxin domain-containing protein YP_003198650.1 2056606 R 485915 CDS YP_003198651.1 258405909 8419630 complement(2057280..2057624) 1 NC_013223.1 PFAM: protein of unknown function DUF498; KEGG: 1810020D17Rik; RIKEN cDNA 1810020D17 gene ; K09008 hypothetical protein; hypothetical protein 2057624 8419630 Dret_1789 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198651.1 2057280 R 485915 CDS YP_003198652.1 258405910 8419631 complement(2057799..2058722) 1 NC_013223.1 PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_1696 radical SAM domain protein; radical SAM protein 2058722 8419631 Dret_1790 Desulfohalobium retbaense DSM 5692 radical SAM protein YP_003198652.1 2057799 R 485915 CDS YP_003198653.1 258405911 8419632 complement(2058993..2060024) 1 NC_013223.1 PFAM: protein of unknown function DUF1566; KEGG: dde:Dde_1619 hypothetical protein; hypothetical protein 2060024 8419632 Dret_1791 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198653.1 2058993 R 485915 CDS YP_003198654.1 258405912 8419633 complement(2060074..2060964) 1 NC_013223.1 PFAM: Patatin; KEGG: she:Shewmr4_3733 patatin; patatin 2060964 8419633 Dret_1792 Desulfohalobium retbaense DSM 5692 patatin YP_003198654.1 2060074 R 485915 CDS YP_003198655.1 258405913 8419634 complement(2060974..2061636) 1 NC_013223.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dma:DMR_01740 putative potassium transport systems NAD-binding component; TrkA-N domain-containing protein 2061636 8419634 Dret_1793 Desulfohalobium retbaense DSM 5692 TrkA-N domain-containing protein YP_003198655.1 2060974 R 485915 CDS YP_003198656.1 258405914 8419635 complement(2061705..2063066) 1 NC_013223.1 PFAM: cation transporter; KEGG: dma:DMR_01730 putative potassium uptake system membrane components; H(+)-transporting two-sector ATPase 2063066 8419635 Dret_1794 Desulfohalobium retbaense DSM 5692 H(+)-transporting two-sector ATPase YP_003198656.1 2061705 R 485915 CDS YP_003198657.1 258405915 8419636 complement(2063079..2064248) 1 NC_013223.1 PFAM: sodium/hydrogen exchanger; KEGG: pca:Pcar_0178 Na+/H+ antiporter; sodium/hydrogen exchanger 2064248 8419636 Dret_1795 Desulfohalobium retbaense DSM 5692 sodium/hydrogen exchanger YP_003198657.1 2063079 R 485915 CDS YP_003198658.1 258405916 8419637 complement(2064378..2065793) 1 NC_013223.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; UspA domain protein; KEGG: pca:Pcar_0177 K+ transport systems, NAD- binding component; TrkA-N domain-containing protein 2065793 8419637 Dret_1796 Desulfohalobium retbaense DSM 5692 TrkA-N domain-containing protein YP_003198658.1 2064378 R 485915 CDS YP_003198659.1 258405917 8419638 complement(2066200..2067174) 1 NC_013223.1 KEGG: mmw:Mmwyl1_1898 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 2067174 8419638 Dret_1797 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor-containing diguanylate cyclase YP_003198659.1 2066200 R 485915 CDS YP_003198660.1 258405918 8419639 2067554..2067931 1 NC_013223.1 hypothetical protein 2067931 8419639 Dret_1798 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198660.1 2067554 D 485915 CDS YP_003198661.1 258405919 8419640 2068062..2068634 1 NC_013223.1 PFAM: protein of unknown function DUF204; KEGG: dvl:Dvul_0455 hypothetical protein; hypothetical protein 2068634 8419640 Dret_1799 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198661.1 2068062 D 485915 CDS YP_003198662.1 258405920 8419641 2068709..2069164 1 NC_013223.1 PFAM: cytochrome c class III; KEGG: dma:DMR_02560 cytochrome c3; cytochrome c class III 2069164 8419641 Dret_1800 Desulfohalobium retbaense DSM 5692 cytochrome c class III YP_003198662.1 2068709 D 485915 CDS YP_003198663.1 258405921 8419642 complement(2069254..2069814) 1 NC_013223.1 SMART: Tetratricopeptide repeat; KEGG: dvm:DvMF_3127 tetratricopeptide TPR_2 repeat protein; hypothetical protein 2069814 8419642 Dret_1801 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198663.1 2069254 R 485915 CDS YP_003198664.1 258405922 8419643 complement(2069807..2071729) 1 NC_013223.1 PFAM: cytochrome c assembly protein; KEGG: dma:DMR_22500 cytochrome c-type biogenesis protein CcmF; cytochrome c assembly protein 2071729 8419643 Dret_1802 Desulfohalobium retbaense DSM 5692 cytochrome c assembly protein YP_003198664.1 2069807 R 485915 CDS YP_003198665.1 258405923 8419644 complement(2071961..2072416) 1 NC_013223.1 PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: ppr:PBPRA3092 hypothetical protein; sigma E positive regulator RseC/MucC 2072416 8419644 Dret_1803 Desulfohalobium retbaense DSM 5692 sigma E positive regulator RseC/MucC YP_003198665.1 2071961 R 485915 CDS YP_003198666.1 258405924 8419645 complement(2072457..2072747) 1 NC_013223.1 PFAM: Protein of unknown function DUF2078, membrane; KEGG: sat:SYN_02429 hypothetical protein; hypothetical protein 2072747 8419645 Dret_1804 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198666.1 2072457 R 485915 CDS YP_003198667.1 258405925 8419646 complement(2072820..2073473) 1 NC_013223.1 KEGG: GG21082 gene product from transcript GG21082- RA; hypothetical protein 2073473 8419646 Dret_1805 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198667.1 2072820 R 485915 CDS YP_003198668.1 258405926 8419647 2073998..2074768 1 NC_013223.1 hypothetical protein 2074768 8419647 Dret_1806 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198668.1 2073998 D 485915 CDS YP_003198669.1 258405927 8419648 2074987..2076024 1 NC_013223.1 PFAM: molybdopterin binding domain; KEGG: dma:DMR_05970 molybdopterin binding domain protein; molybdopterin binding domain-containing protein 2076024 8419648 Dret_1807 Desulfohalobium retbaense DSM 5692 molybdopterin binding domain-containing protein YP_003198669.1 2074987 D 485915 CDS YP_003198670.1 258405928 8419649 2076118..2078832 1 NC_013223.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: dat:HRM2_07080 Mop1; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 2078832 8419649 Dret_1808 Desulfohalobium retbaense DSM 5692 molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_003198670.1 2076118 D 485915 CDS YP_003198671.1 258405929 8419650 2079112..2081418 1 NC_013223.1 KEGG: gur:Gura_0999 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 2081418 8419650 Dret_1809 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003198671.1 2079112 D 485915 CDS YP_003198672.1 258405930 8419651 2081418..2081633 1 NC_013223.1 KEGG: dds:Ddes_1821 hypothetical protein; hypothetical protein 2081633 8419651 Dret_1810 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198672.1 2081418 D 485915 CDS YP_003198673.1 258405931 8419652 2081643..2082350 1 NC_013223.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pca:Pcar_0223 SAM-dependent methyltransferase; type 11 methyltransferase 2082350 8419652 Dret_1811 Desulfohalobium retbaense DSM 5692 type 11 methyltransferase YP_003198673.1 2081643 D 485915 CDS YP_003198674.1 258405932 8419653 2082358..2082816 1 NC_013223.1 PFAM: C_GCAxxG_C_C family protein; KEGG: ppd:Ppro_1533 hypothetical protein; C_GCAxxG_C_C family protein 2082816 8419653 Dret_1812 Desulfohalobium retbaense DSM 5692 C_GCAxxG_C_C family protein YP_003198674.1 2082358 D 485915 CDS YP_003198675.1 258405933 8419654 2082806..2084134 1 NC_013223.1 PFAM: Radical SAM domain protein; KEGG: dde:Dde_3544 elongator protein 3/MiaB/NifB; radical SAM protein 2084134 8419654 Dret_1813 Desulfohalobium retbaense DSM 5692 radical SAM protein YP_003198675.1 2082806 D 485915 CDS YP_003198676.1 258405934 8419655 2084555..2085928 1 NC_013223.1 KEGG: gur:Gura_1004 coenzyme F390 synthetase-like protein; coenzyme F390 synthetase-like protein 2085928 8419655 Dret_1814 Desulfohalobium retbaense DSM 5692 coenzyme F390 synthetase-like protein YP_003198676.1 2084555 D 485915 CDS YP_003198677.1 258405935 8419656 2085912..2086946 1 NC_013223.1 KEGG: gur:Gura_1005 hypothetical protein; hypothetical protein 2086946 8419656 Dret_1815 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198677.1 2085912 D 485915 CDS YP_003198678.1 258405936 8419657 2086947..2088065 1 NC_013223.1 KEGG: sfu:Sfum_1317 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 2088065 8419657 Dret_1816 Desulfohalobium retbaense DSM 5692 metal dependent phosphohydrolase YP_003198678.1 2086947 D 485915 CDS YP_003198679.1 258405937 8419658 2088062..2088688 1 NC_013223.1 PFAM: Phosphoglycerate mutase; KEGG: gur:Gura_1007 phosphoglycerate mutase; phosphoglycerate mutase 2088688 8419658 Dret_1817 Desulfohalobium retbaense DSM 5692 phosphoglycerate mutase YP_003198679.1 2088062 D 485915 CDS YP_003198680.1 258405938 8419659 complement(2088695..2089420) 1 NC_013223.1 KEGG: dol:Dole_0215 hypothetical protein; hypothetical protein 2089420 8419659 Dret_1818 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198680.1 2088695 R 485915 CDS YP_003198681.1 258405939 8419660 complement(2089543..2090604) 1 NC_013223.1 KEGG: dat:HRM2_01680 putative molybdenum ABC-type transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase 2090604 8419660 Dret_1819 Desulfohalobium retbaense DSM 5692 molybdate ABC transporter ATPase YP_003198681.1 2089543 R 485915 CDS YP_003198682.1 258405940 8419661 complement(2090601..2091386) 1 NC_013223.1 TIGRFAM: NifC-like ABC-type porter; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_01690 putative molybdenum ABC-type transporter, permease subunit; ABC transporter 2091386 8419661 Dret_1820 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003198682.1 2090601 R 485915 CDS YP_003198683.1 258405941 8419662 complement(2091371..2092135) 1 NC_013223.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: dat:HRM2_01700 ModA3; molybdenum ABC transporter periplasmic molybdate-binding protein 2092135 8419662 Dret_1821 Desulfohalobium retbaense DSM 5692 molybdenum ABC transporter periplasmic molybdate-binding protein YP_003198683.1 2091371 R 485915 CDS YP_003198684.1 258405942 8419663 2092229..2092372 1 NC_013223.1 hypothetical protein 2092372 8419663 Dret_1822 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198684.1 2092229 D 485915 CDS YP_003198685.1 258405943 8419664 2092392..2093900 1 NC_013223.1 PFAM: deoxyribodipyrimidine photolyase-related protein; DNA photolyase FAD-binding; KEGG: pat:Patl_2797 deoxyribodipyrimidine photolyase-related protein; deoxyribodipyrimidine photolyase-like protein 2093900 8419664 Dret_1823 Desulfohalobium retbaense DSM 5692 deoxyribodipyrimidine photolyase-like protein YP_003198685.1 2092392 D 485915 CDS YP_003198686.1 258405944 8419665 2094873..2095127 1 NC_013223.1 KEGG: pin:Ping_0486 hypothetical protein; hypothetical protein 2095127 8419665 Dret_1824 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198686.1 2094873 D 485915 CDS YP_003198687.1 258405945 8419666 2095407..2096093 1 NC_013223.1 KEGG: cbc:CbuK_0049 ATP synthase B chain; hypothetical protein 2096093 8419666 Dret_1825 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198687.1 2095407 D 485915 CDS YP_003198688.1 258405946 8419667 2096090..2096629 1 NC_013223.1 hypothetical protein 2096629 8419667 Dret_1826 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198688.1 2096090 D 485915 CDS YP_003198689.1 258405947 8419668 2096680..2098449 1 NC_013223.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 2098449 8419668 Dret_1827 Desulfohalobium retbaense DSM 5692 V-type ATP synthase subunit A YP_003198689.1 2096680 D 485915 CDS YP_003198690.1 258405948 8419669 2098442..2099773 1 NC_013223.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 2099773 8419669 Dret_1828 Desulfohalobium retbaense DSM 5692 V-type ATP synthase subunit B YP_003198690.1 2098442 D 485915 CDS YP_003198691.1 258405949 8419670 2099751..2100356 1 NC_013223.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 2100356 8419670 Dret_1829 Desulfohalobium retbaense DSM 5692 V-type ATP synthase subunit D YP_003198691.1 2099751 D 485915 CDS YP_003198692.1 258405950 8419671 2100353..2102125 1 NC_013223.1 PFAM: V-type ATPase 116 kDa subunit; KEGG: gur:Gura_0418 H(+)-transporting two-sector ATPase; V-type ATPase 116 kDa subunit 2102125 8419671 Dret_1830 Desulfohalobium retbaense DSM 5692 V-type ATPase 116 kDa subunit YP_003198692.1 2100353 D 485915 CDS YP_003198693.1 258405951 8419672 2102400..2102873 1 NC_013223.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 2102873 8419672 Dret_1831 Desulfohalobium retbaense DSM 5692 V-type ATP synthase subunit K YP_003198693.1 2102400 D 485915 CDS YP_003198694.1 258405952 8419673 complement(2103080..2103541) 1 NC_013223.1 KEGG: maq:Maqu_1646 hypothetical protein; hypothetical protein 2103541 8419673 Dret_1832 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198694.1 2103080 R 485915 CDS YP_003198695.1 258405953 8419674 complement(2103826..2104416) 1 NC_013223.1 KEGG: dol:Dole_2802 hypothetical protein; hypothetical protein 2104416 8419674 Dret_1833 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198695.1 2103826 R 485915 CDS YP_003198696.1 258405954 8419675 complement(2104409..2104951) 1 NC_013223.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dol:Dole_2803 protein of unknown function DUF395 YeeE/YedE; hypothetical protein 2104951 8419675 Dret_1834 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198696.1 2104409 R 485915 CDS YP_003198697.1 258405955 8419676 complement(2104944..2105477) 1 NC_013223.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dol:Dole_2804 hypothetical protein; hypothetical protein 2105477 8419676 Dret_1835 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198697.1 2104944 R 485915 CDS YP_003198698.1 258405956 8419677 complement(2105484..2106599) 1 NC_013223.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: dol:Dole_2805 rhodanese domain-containing protein; rhodanese domain-containing protein 2106599 8419677 Dret_1836 Desulfohalobium retbaense DSM 5692 rhodanese domain-containing protein YP_003198698.1 2105484 R 485915 CDS YP_003198699.1 258405957 8419678 complement(2106831..2108465) 1 NC_013223.1 KEGG: pca:Pcar_0911 sensory box histidine kinase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 2108465 8419678 Dret_1837 Desulfohalobium retbaense DSM 5692 diguanylate cyclase YP_003198699.1 2106831 R 485915 CDS YP_003198700.1 258405958 8419679 complement(2108462..2109781) 1 NC_013223.1 PFAM: major facilitator superfamily MFS_1; KEGG: pca:Pcar_1854 major facilitator superfamily permease/BtlA-like; major facilitator superfamily protein 2109781 8419679 Dret_1838 Desulfohalobium retbaense DSM 5692 major facilitator superfamily protein YP_003198700.1 2108462 R 485915 CDS YP_003198701.1 258405959 8419680 2110076..2110465 1 NC_013223.1 PFAM: protein of unknown function UPF0066; KEGG: dol:Dole_1581 hypothetical protein; hypothetical protein 2110465 8419680 Dret_1839 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198701.1 2110076 D 485915 CDS YP_003198702.1 258405960 8419681 complement(2110587..2111243) 1 NC_013223.1 PFAM: SNARE associated Golgi protein; KEGG: dol:Dole_2781 SNARE associated Golgi protein; hypothetical protein 2111243 8419681 Dret_1840 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198702.1 2110587 R 485915 CDS YP_003198703.1 258405961 8419682 2112581..2113000 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_0703 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2113000 8419682 Dret_1841 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003198703.1 2112581 D 485915 CDS YP_003198704.1 258405962 8419683 2112993..2114849 1 NC_013223.1 KEGG: dal:Dalk_0704 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase 2114849 8419683 Dret_1842 Desulfohalobium retbaense DSM 5692 Aldehyde ferredoxin oxidoreductase YP_003198704.1 2112993 D 485915 CDS YP_003198705.1 258405963 8419684 2115198..2115650 1 NC_013223.1 KEGG: dps:DP0122 17 kDa surface antigen; 17 kDa surface antigen 2115650 8419684 Dret_1843 Desulfohalobium retbaense DSM 5692 17 kDa surface antigen YP_003198705.1 2115198 D 485915 CDS YP_003198706.1 258405964 8419685 complement(2116165..2116842) 1 NC_013223.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dal:Dalk_0291 methyltransferase type 11; type 11 methyltransferase 2116842 8419685 Dret_1844 Desulfohalobium retbaense DSM 5692 type 11 methyltransferase YP_003198706.1 2116165 R 485915 CDS YP_003198707.1 258405965 8419686 2116967..2117602 1 NC_013223.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_2217 TetR family transcriptional regulator; TetR family transcriptional regulator 2117602 8419686 Dret_1845 Desulfohalobium retbaense DSM 5692 TetR family transcriptional regulator YP_003198707.1 2116967 D 485915 CDS YP_003198708.1 258405966 8419687 2117596..2117739 1 NC_013223.1 KEGG: dde:Dde_1338 hypothetical protein; hypothetical protein 2117739 8419687 Dret_1846 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198708.1 2117596 D 485915 CDS YP_003198709.1 258405967 8419688 2117767..2119398 1 NC_013223.1 PFAM: Na+/solute symporter; KEGG: dde:Dde_1337 sodium/proline symporter (proline permease); Na+/solute symporter 2119398 8419688 Dret_1847 Desulfohalobium retbaense DSM 5692 Na+/solute symporter YP_003198709.1 2117767 D 485915 CDS YP_003198710.1 258405968 8419689 complement(2119840..2120550) 1 NC_013223.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_1342 two component transcriptional regulator, winged helix family; two component transcriptional regulator, winged helix family 2120550 8419689 Dret_1848 Desulfohalobium retbaense DSM 5692 two component transcriptional regulator, winged helix family YP_003198710.1 2119840 R 485915 CDS YP_003198711.1 258405969 8419690 complement(2120534..2121568) 1 NC_013223.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gur:Gura_1335 integral membrane sensor signal transduction histidine kinase; histidine kinase 2121568 8419690 Dret_1849 Desulfohalobium retbaense DSM 5692 histidine kinase YP_003198711.1 2120534 R 485915 CDS YP_003198712.1 258405970 8419691 complement(2121623..2121967) 1 NC_013223.1 hypothetical protein 2121967 8419691 Dret_1850 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198712.1 2121623 R 485915 CDS YP_003198713.1 258405971 8419692 2122012..2123133 1 NC_013223.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: dds:Ddes_0977 2-nitropropane dioxygenase NPD; 2-nitropropane dioxygenase 2123133 8419692 Dret_1851 Desulfohalobium retbaense DSM 5692 2-nitropropane dioxygenase YP_003198713.1 2122012 D 485915 CDS YP_003198714.1 258405972 8419693 2123525..2124451 1 NC_013223.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_0146 putative glycine betaine/L- proline ABC transporter, solute-binding protein; glycine/betaine ABC transporter substrate-binding protein 2124451 8419693 Dret_1852 Desulfohalobium retbaense DSM 5692 glycine/betaine ABC transporter substrate-binding protein YP_003198714.1 2123525 D 485915 CDS YP_003198715.1 258405973 8419694 complement(2124645..2126711) 1 NC_013223.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: dol:Dole_0855 sodium/hydrogen exchanger; sodium/hydrogen exchanger 2126711 8419694 Dret_1853 Desulfohalobium retbaense DSM 5692 sodium/hydrogen exchanger YP_003198715.1 2124645 R 485915 CDS YP_003198716.1 258405974 8419695 complement(2126954..2127307) 1 NC_013223.1 KEGG: pca:Pcar_0926 sensory box protein; hypothetical protein 2127307 8419695 Dret_1854 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198716.1 2126954 R 485915 CDS YP_003198717.1 258405975 8419696 complement(2127322..2127708) 1 NC_013223.1 hypothetical protein 2127708 8419696 Dret_1855 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198717.1 2127322 R 485915 CDS YP_003198718.1 258405976 8419697 2128183..2129169 1 NC_013223.1 PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: dma:DMR_30690 curved DNA-binding protein; chaperone DnaJ domain-containing protein 2129169 8419697 Dret_1856 Desulfohalobium retbaense DSM 5692 chaperone DnaJ domain-containing protein YP_003198718.1 2128183 D 485915 CDS YP_003198719.1 258405977 8419698 2129316..2129633 1 NC_013223.1 KEGG: dvm:DvMF_0568 hypothetical protein; hypothetical protein 2129633 8419698 Dret_1857 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198719.1 2129316 D 485915 CDS YP_003198720.1 258405978 8419699 2129829..2132429 1 NC_013223.1 KEGG: dvm:DvMF_0567 ATP-dependent chaperone ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; AAA ATPase central domain protein; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB 2132429 8419699 Dret_1858 Desulfohalobium retbaense DSM 5692 ATP-dependent chaperone ClpB YP_003198720.1 2129829 D 485915 CDS YP_003198721.1 258405979 8419702 complement(2132826..2133167) 1 NC_013223.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: hypothetical protein; heat shock protein DnaJ domain-containing protein 2133167 8419702 Dret_1859 Desulfohalobium retbaense DSM 5692 heat shock protein DnaJ domain-containing protein YP_003198721.1 2132826 R 485915 CDS YP_003198722.1 258405980 8419703 complement(2133215..2133466) 1 NC_013223.1 hypothetical protein 2133466 8419703 Dret_1860 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198722.1 2133215 R 485915 CDS YP_003198723.1 258405981 8419704 complement(2133542..2133940) 1 NC_013223.1 KEGG: dol:Dole_2162 alkyl hydroperoxide reductase; alkyl hydroperoxide reductase 2133940 8419704 Dret_1861 Desulfohalobium retbaense DSM 5692 alkyl hydroperoxide reductase YP_003198723.1 2133542 R 485915 CDS YP_003198724.1 258405982 8419705 complement(2134010..2134264) 1 NC_013223.1 KEGG: dol:Dole_2161 peroxiredoxin-like protein; peroxiredoxin-like protein 2134264 8419705 Dret_1862 Desulfohalobium retbaense DSM 5692 peroxiredoxin-like protein YP_003198724.1 2134010 R 485915 CDS YP_003198725.1 258405983 8419706 complement(2134455..2135093) 1 NC_013223.1 PFAM: cyclase family protein; KEGG: dal:Dalk_2911 cyclase family protein; cyclase family protein 2135093 8419706 Dret_1863 Desulfohalobium retbaense DSM 5692 cyclase family protein YP_003198725.1 2134455 R 485915 CDS YP_003198726.1 258405984 8419707 2135595..2135876 1 NC_013223.1 KEGG: dvl:Dvul_1334 hypothetical protein; hypothetical protein 2135876 8419707 Dret_1864 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198726.1 2135595 D 485915 CDS YP_003198727.1 258405985 8419708 2136104..2137324 1 NC_013223.1 catalyzes the transamination of diaminopimelate with 2-oxoglutarate to produce tetrahydrodipicolinate and glutamate; diaminopimelate aminotransferase 2137324 8419708 Dret_1865 Desulfohalobium retbaense DSM 5692 diaminopimelate aminotransferase YP_003198727.1 2136104 D 485915 CDS YP_003198728.1 258405986 8419709 2137327..2139207 1 NC_013223.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 2139207 8419709 Dret_1866 Desulfohalobium retbaense DSM 5692 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_003198728.1 2137327 D 485915 CDS YP_003198729.1 258405987 8419710 2140216..2141073 1 NC_013223.1 PFAM: CBS domain containing protein; transporter- associated region; SMART: CBS domain containing protein; KEGG: dde:Dde_1807 CBS; hypothetical protein 2141073 8419710 Dret_1867 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198729.1 2140216 D 485915 CDS YP_003198730.1 258405988 8419711 2141076..2142593 1 NC_013223.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dma:DMR_26090 apolipoprotein N- acyltransferase; apolipoprotein N-acyltransferase 2142593 8419711 Dret_1868 Desulfohalobium retbaense DSM 5692 apolipoprotein N-acyltransferase YP_003198730.1 2141076 D 485915 CDS YP_003198731.1 258405989 8419712 join(2143058..2143132,2143134..2144174) 1 NC_013223.1 KEGG: GH18944 gene product from transcript GH18944- RA; hypothetical protein 2144174 8419712 Dret_1869 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198731.1 2143058 D 485915 CDS YP_003198732.1 258405990 8419713 2144561..2144836 1 NC_013223.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: dde:Dde_1799 histone-like DNA-binding protein; histone family protein DNA-binding protein 2144836 8419713 Dret_1870 Desulfohalobium retbaense DSM 5692 histone family protein DNA-binding protein YP_003198732.1 2144561 D 485915 CDS YP_003198733.1 258405991 8419714 2144833..2145000 1 NC_013223.1 hypothetical protein 2145000 8419714 Dret_1871 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198733.1 2144833 D 485915 CDS YP_003198734.1 258405992 8419715 2145130..2145708 1 NC_013223.1 KEGG: dma:DMR_26140 hypothetical protein; hypothetical protein 2145708 8419715 Dret_1872 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198734.1 2145130 D 485915 CDS YP_003198735.1 258405993 8419716 2145989..2146834 1 NC_013223.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 2146834 dapF 8419716 dapF Desulfohalobium retbaense DSM 5692 diaminopimelate epimerase YP_003198735.1 2145989 D 485915 CDS YP_003198736.1 258405994 8419717 2147054..2147932 1 NC_013223.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2147932 8419717 Dret_1874 Desulfohalobium retbaense DSM 5692 dihydrodipicolinate synthase YP_003198736.1 2147054 D 485915 CDS YP_003198737.1 258405995 8419718 complement(2148640..2149182) 1 NC_013223.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 2149182 8419718 Dret_1875 Desulfohalobium retbaense DSM 5692 bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase YP_003198737.1 2148640 R 485915 CDS YP_003198738.1 258405996 8419719 2150311..2151009 1 NC_013223.1 TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; KEGG: dat:HRM2_40650 SfsA; sugar fermentation stimulation protein 2151009 8419719 Dret_1876 Desulfohalobium retbaense DSM 5692 sugar fermentation stimulation protein YP_003198738.1 2150311 D 485915 CDS YP_003198739.1 258405997 8419720 2151124..2153637 1 NC_013223.1 TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: dvm:DvMF_3170 heavy metal translocating P- type ATPase; heavy metal translocating P-type ATPase 2153637 8419720 Dret_1877 Desulfohalobium retbaense DSM 5692 heavy metal translocating P-type ATPase YP_003198739.1 2151124 D 485915 CDS YP_003198740.1 258405998 8419721 2153735..2154040 1 NC_013223.1 KEGG: dma:DMR_38440 hypothetical protein; Contains selenocysteine; hypothetical protein 2154040 8419721 Dret_1878 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198740.1 2153735 D 485915 CDS YP_003198741.1 258405999 8419722 2154685..2154999 1 NC_013223.1 KEGG: dma:DMR_38440 hypothetical protein; hypothetical protein 2154999 8419722 Dret_1879 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198741.1 2154685 D 485915 CDS YP_003198742.1 258406000 8419723 2156067..2157236 1 NC_013223.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dde:Dde_0970 fic family protein; filamentation induced by cAMP protein fic 2157236 8419723 Dret_1880 Desulfohalobium retbaense DSM 5692 filamentation induced by cAMP protein fic YP_003198742.1 2156067 D 485915 CDS YP_003198743.1 258406001 8419724 2157941..2159623 1 NC_013223.1 PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: dal:Dalk_4398 peptidoglycan-binding LysM; Peptidoglycan-binding lysin domain-containing protein 2159623 8419724 Dret_1881 Desulfohalobium retbaense DSM 5692 Peptidoglycan-binding lysin domain-containing protein YP_003198743.1 2157941 D 485915 CDS YP_003198744.1 258406002 8419725 2160852..2162510 1 NC_013223.1 KEGG: dde:Dde_0121 hypothetical protein; hypothetical protein 2162510 8419725 Dret_1882 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198744.1 2160852 D 485915 CDS YP_003198745.1 258406003 8419726 2162653..2164083 1 NC_013223.1 KEGG: dde:Dde_1011 hypothetical protein; hypothetical protein 2164083 8419726 Dret_1883 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198745.1 2162653 D 485915 CDS YP_003198746.1 258406004 8419727 2164262..2165128 1 NC_013223.1 KEGG: bgl:bglu_1g23150 auxin-binding protein; hypothetical protein 2165128 8419727 Dret_1884 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198746.1 2164262 D 485915 CDS YP_003198747.1 258406005 8419728 2166314..2167564 1 NC_013223.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: mlo:mll1163 methylamine utilization protein; Di-heme cytochrome c peroxidase 2167564 8419728 Dret_1885 Desulfohalobium retbaense DSM 5692 Di-heme cytochrome c peroxidase YP_003198747.1 2166314 D 485915 CDS YP_003198748.1 258406006 8419729 complement(2168406..2169428) 1 NC_013223.1 KEGG: dma:DMR_34450 hypothetical protein; hypothetical protein 2169428 8419729 Dret_1886 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198748.1 2168406 R 485915 CDS YP_003198749.1 258406007 8419730 2170327..2171433 1 NC_013223.1 PFAM: Polynucleotide adenylyltransferase region; KEGG: dma:DMR_28110 putative tRNA nucleotidyltransferase; tRNA adenylyltransferase 2171433 8419730 Dret_1887 Desulfohalobium retbaense DSM 5692 tRNA adenylyltransferase YP_003198749.1 2170327 D 485915 CDS YP_003198750.1 258406008 8419731 2171772..2172287 1 NC_013223.1 KEGG: dal:Dalk_2791 hypothetical protein; hypothetical protein 2172287 8419731 Dret_1888 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198750.1 2171772 D 485915 CDS YP_003198751.1 258406009 8419732 2172452..2173126 1 NC_013223.1 PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: dma:DMR_22330 hypothetical protein; nuclease (SNase domain-containing protein) 2173126 8419732 Dret_1889 Desulfohalobium retbaense DSM 5692 nuclease (SNase domain-containing protein) YP_003198751.1 2172452 D 485915 CDS YP_003198752.1 258406010 8419733 complement(2173212..2173373) 1 NC_013223.1 hypothetical protein 2173373 8419733 Dret_1890 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198752.1 2173212 R 485915 CDS YP_003198753.1 258406011 8419734 complement(2173630..2173983) 1 NC_013223.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sat:SYN_01508 transcriptional regulator helix turn helix; XRE family transcriptional regulator 2173983 8419734 Dret_1891 Desulfohalobium retbaense DSM 5692 XRE family transcriptional regulator YP_003198753.1 2173630 R 485915 CDS YP_003198754.1 258406012 8419735 complement(2173952..2174230) 1 NC_013223.1 KEGG: glo:Glov_1134 conserved hypothetical cytosolic protein; hypothetical protein 2174230 8419735 Dret_1892 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198754.1 2173952 R 485915 CDS YP_003198755.1 258406013 8419736 complement(2174345..2174500) 1 NC_013223.1 hypothetical protein 2174500 8419736 Dret_1893 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198755.1 2174345 R 485915 CDS YP_003198756.1 258406014 8419737 complement(2174960..2176723) 1 NC_013223.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein; KEGG: dde:Dde_2052 sigma-70 factor; RpoD subfamily RNA polymerase sigma-70 subunit 2176723 8419737 Dret_1894 Desulfohalobium retbaense DSM 5692 RpoD subfamily RNA polymerase sigma-70 subunit YP_003198756.1 2174960 R 485915 CDS YP_003198757.1 258406015 8419738 complement(2176716..2178437) 1 NC_013223.1 KEGG: dma:DMR_20690 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein; DNA primase 2178437 8419738 Dret_1895 Desulfohalobium retbaense DSM 5692 DNA primase YP_003198757.1 2176716 R 485915 CDS YP_003198758.1 258406016 8419739 complement(2178767..2178961) 1 NC_013223.1 hypothetical protein 2178961 8419739 Dret_1896 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198758.1 2178767 R 485915 CDS YP_003198759.1 258406017 8419740 complement(2178954..2181257) 1 NC_013223.1 KEGG: dvu:DVU1790 MutS2 family protein; TIGRFAM: MutS2 family protein; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; MutS III domain protein; MutS2 family protein 2181257 8419740 Dret_1897 Desulfohalobium retbaense DSM 5692 MutS2 family protein YP_003198759.1 2178954 R 485915 CDS YP_003198760.1 258406018 8419741 complement(2181840..2182040) 1 NC_013223.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 2182040 rpsU 8419741 rpsU Desulfohalobium retbaense DSM 5692 30S ribosomal protein S21 YP_003198760.1 2181840 R 485915 CDS YP_003198761.1 258406019 8419742 complement(2182190..2182363) 1 NC_013223.1 KEGG: dvl:Dvul_1365 hypothetical protein; hypothetical protein 2182363 8419742 Dret_1899 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198761.1 2182190 R 485915 CDS YP_003198762.1 258406020 8419743 complement(2182379..2182651) 1 NC_013223.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: dma:DMR_20640 HU_IHF family transcriptional regulator; histone family protein DNA-binding protein 2182651 8419743 Dret_1900 Desulfohalobium retbaense DSM 5692 histone family protein DNA-binding protein YP_003198762.1 2182379 R 485915 CDS YP_003198763.1 258406021 8419744 complement(2183400..2184218) 1 NC_013223.1 KEGG: dvm:DvMF_0501 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase; dimethyladenosine transferase 2184218 8419744 Dret_1901 Desulfohalobium retbaense DSM 5692 dimethyladenosine transferase YP_003198763.1 2183400 R 485915 CDS YP_003198764.1 258406022 8419745 complement(2184215..2185702) 1 NC_013223.1 PFAM: glycosyl transferase family 20; KEGG: sat:SYN_02628 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Alpha,alpha-trehalose-phosphate synthase (UDP- forming) 2185702 8419745 Dret_1902 Desulfohalobium retbaense DSM 5692 Alpha,alpha-trehalose-phosphate synthase (UDP- forming) YP_003198764.1 2184215 R 485915 CDS YP_003198765.1 258406023 8419746 complement(2185808..2186641) 1 NC_013223.1 TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; KEGG: dde:Dde_2061 trehalose-phosphatase; trehalose-phosphatase 2186641 8419746 Dret_1903 Desulfohalobium retbaense DSM 5692 trehalose-phosphatase YP_003198765.1 2185808 R 485915 CDS YP_003198766.1 258406024 8419747 complement(2187066..2189114) 1 NC_013223.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2189114 8419747 Dret_1904 Desulfohalobium retbaense DSM 5692 elongation factor G YP_003198766.1 2187066 R 485915 CDS YP_003198767.1 258406025 8419748 complement(2189111..2189977) 1 NC_013223.1 KEGG: dde:Dde_2064 hypothetical protein; hypothetical protein 2189977 8419748 Dret_1905 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198767.1 2189111 R 485915 CDS YP_003198768.1 258406026 8419749 complement(2190543..2191277) 1 NC_013223.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; SMART: Tetratricopeptide repeat; KEGG: dde:Dde_2065 putative lipoprotein; outer membrane assembly lipoprotein YfiO 2191277 8419749 Dret_1906 Desulfohalobium retbaense DSM 5692 outer membrane assembly lipoprotein YfiO YP_003198768.1 2190543 R 485915 CDS YP_003198769.1 258406027 8419750 complement(2191267..2192199) 1 NC_013223.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvl:Dvul_1324 thioredoxin reductase; thioredoxin-disulfide reductase 2192199 8419750 Dret_1907 Desulfohalobium retbaense DSM 5692 thioredoxin-disulfide reductase YP_003198769.1 2191267 R 485915 CDS YP_003198770.1 258406028 8419751 complement(2192202..2192522) 1 NC_013223.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dma:DMR_21650 thioredoxin; thioredoxin 2192522 8419751 Dret_1908 Desulfohalobium retbaense DSM 5692 thioredoxin YP_003198770.1 2192202 R 485915 CDS YP_003198771.1 258406029 8419752 complement(2192636..2193721) 1 NC_013223.1 KEGG: dvl:Dvul_1322 metalloendopeptidase glycoprotease family; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase 2193721 8419752 Dret_1909 Desulfohalobium retbaense DSM 5692 glycoprotease family metalloendopeptidase YP_003198771.1 2192636 R 485915 CDS YP_003198772.1 258406030 8419753 complement(2193721..2194725) 1 NC_013223.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 2194725 8419753 Dret_1910 Desulfohalobium retbaense DSM 5692 fructose-1,6-bisphosphatase YP_003198772.1 2193721 R 485915 CDS YP_003198773.1 258406031 8419754 complement(2194713..2195513) 1 NC_013223.1 KEGG: dma:DMR_21620 hypothetical protein; hypothetical protein 2195513 8419754 Dret_1911 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198773.1 2194713 R 485915 CDS YP_003198774.1 258406032 8419755 complement(2195566..2196480) 1 NC_013223.1 KEGG: dvm:DvMF_0406 tetratricopeptide TPR_4; hypothetical protein 2196480 8419755 Dret_1912 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198774.1 2195566 R 485915 CDS YP_003198775.1 258406033 8419756 complement(2196470..2196778) 1 NC_013223.1 PFAM: Septum formation initiator; KEGG: dds:Ddes_1194 septum formation initiator; septum formation initiator 2196778 8419756 Dret_1913 Desulfohalobium retbaense DSM 5692 septum formation initiator YP_003198775.1 2196470 R 485915 CDS YP_003198776.1 258406034 8419757 complement(2197064..2197321) 1 NC_013223.1 KEGG: dde:Dde_2073 hypothetical protein; hypothetical protein 2197321 8419757 Dret_1914 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198776.1 2197064 R 485915 CDS YP_003198777.1 258406035 8419758 complement(2197318..2197965) 1 NC_013223.1 KEGG: dat:HRM2_05010 hypothetical protein; hypothetical protein 2197965 8419758 Dret_1915 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198777.1 2197318 R 485915 CDS YP_003198778.1 258406036 8419759 complement(2198030..2199211) 1 NC_013223.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: sat:SYN_00126 pili retraction protein; twitching motility protein 2199211 8419759 Dret_1916 Desulfohalobium retbaense DSM 5692 twitching motility protein YP_003198778.1 2198030 R 485915 CDS YP_003198779.1 258406037 8419760 complement(2199214..2200296) 1 NC_013223.1 KEGG: dal:Dalk_3302 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 2200296 8419760 Dret_1917 Desulfohalobium retbaense DSM 5692 twitching motility protein YP_003198779.1 2199214 R 485915 CDS YP_003198780.1 258406038 8419761 complement(2200345..2200905) 1 NC_013223.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dvl:Dvul_1316 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2200905 8419761 Dret_1918 Desulfohalobium retbaense DSM 5692 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_003198780.1 2200345 R 485915 CDS YP_003198781.1 258406039 8419762 complement(2200886..2201485) 1 NC_013223.1 PFAM: Lytic transglycosylase catalytic; KEGG: dvm:DvMF_1036 lytic transglycosylase catalytic; Lytic transglycosylase catalytic 2201485 8419762 Dret_1919 Desulfohalobium retbaense DSM 5692 Lytic transglycosylase catalytic YP_003198781.1 2200886 R 485915 CDS YP_003198782.1 258406040 8419763 complement(2201601..2202491) 1 NC_013223.1 PFAM: ATPase-like, ParA/MinD; KEGG: dvl:Dvul_1315 hypothetical protein; ParA/MinD-like ATPase 2202491 8419763 Dret_1920 Desulfohalobium retbaense DSM 5692 ParA/MinD-like ATPase YP_003198782.1 2201601 R 485915 CDS YP_003198783.1 258406041 8419764 complement(2202484..2203389) 1 NC_013223.1 PFAM: protein of unknown function DUF368; KEGG: dol:Dole_2007 hypothetical protein; hypothetical protein 2203389 8419764 Dret_1921 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198783.1 2202484 R 485915 CDS YP_003198784.1 258406042 8419765 complement(2203514..2204176) 1 NC_013223.1 KEGG: dvu:DVU1849 protein-L-isoaspartate O- methyltransferase; TIGRFAM: protein-L-isoaspartate O- methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase; protein-L-isoaspartate O-methyltransferase 2204176 8419765 Dret_1922 Desulfohalobium retbaense DSM 5692 protein-L-isoaspartate O-methyltransferase YP_003198784.1 2203514 R 485915 CDS YP_003198785.1 258406043 8419766 2204371..2204835 1 NC_013223.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dde:Dde_2078 CBS; hypothetical protein 2204835 8419766 Dret_1923 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198785.1 2204371 D 485915 CDS YP_003198786.1 258406044 8419767 complement(2204992..2205468) 1 NC_013223.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dat:HRM2_11670 HyaD1; hydrogenase maturation protease 2205468 8419767 Dret_1924 Desulfohalobium retbaense DSM 5692 hydrogenase maturation protease YP_003198786.1 2204992 R 485915 CDS YP_003198787.1 258406045 8419768 complement(2205565..2205669) 1 NC_013223.1 hypothetical protein 2205669 8419768 Dret_1925 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198787.1 2205565 R 485915 CDS YP_003198788.1 258406046 8419769 2205834..2207243 1 NC_013223.1 KEGG: psb:Psyr_4480 TonB, C-terminal; hypothetical protein 2207243 8419769 Dret_1926 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198788.1 2205834 D 485915 CDS YP_003198789.1 258406047 8419771 complement(2207538..2208962) 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ade:Adeh_3385 ABC transporter, ATPase subunit; ABC transporter 2208962 8419771 Dret_1927 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003198789.1 2207538 R 485915 CDS YP_003198790.1 258406048 8419773 2209545..2210717 1 NC_013223.1 PFAM: aminotransferase class I and II; KEGG: dde:Dde_2730 aminotransferase; class I and II aminotransferase 2210717 8419773 Dret_1928 Desulfohalobium retbaense DSM 5692 class I and II aminotransferase YP_003198790.1 2209545 D 485915 CDS YP_003198791.1 258406049 8419774 2210718..2212010 1 NC_013223.1 PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; oxidoreductase domain protein; KEGG: dde:Dde_2731 homoserine dehydrogenase; Homoserine dehydrogenase 2212010 8419774 Dret_1929 Desulfohalobium retbaense DSM 5692 Homoserine dehydrogenase YP_003198791.1 2210718 D 485915 CDS YP_003198792.1 258406050 8419775 2212082..2213278 1 NC_013223.1 KEGG: dma:DMR_28980 2,3-bisphosphoglycerate- independent phosphoglycerate mutase; TIGRFAM: phosphonopyruvate decarboxylase-related protein; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; metalloenzyme domain protein; phosphonopyruvate decarboxylase-like protein 2213278 8419775 Dret_1930 Desulfohalobium retbaense DSM 5692 phosphonopyruvate decarboxylase-like protein YP_003198792.1 2212082 D 485915 CDS YP_003198793.1 258406051 8419776 2213275..2213706 1 NC_013223.1 PFAM: thioesterase superfamily protein; KEGG: dde:Dde_2735 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 2213706 8419776 Dret_1931 Desulfohalobium retbaense DSM 5692 thioesterase superfamily protein YP_003198793.1 2213275 D 485915 CDS YP_003198794.1 258406052 8419777 2213703..2214545 1 NC_013223.1 PFAM: amidohydrolase 2; TatD-related deoxyribonuclease; KEGG: dma:DMR_28960 amidohydrolase 2 family protein; amidohydrolase 2 2214545 8419777 Dret_1932 Desulfohalobium retbaense DSM 5692 amidohydrolase 2 YP_003198794.1 2213703 D 485915 CDS YP_003198795.1 258406053 8419778 2214542..2215057 1 NC_013223.1 KEGG: dds:Ddes_1271 hypothetical protein; hypothetical protein 2215057 8419778 Dret_1933 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198795.1 2214542 D 485915 CDS YP_003198796.1 258406054 8419779 complement(2215825..2216709) 1 NC_013223.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: dat:HRM2_44930 YwkC; 6-phosphogluconate dehydrogenase 2216709 8419779 Dret_1934 Desulfohalobium retbaense DSM 5692 6-phosphogluconate dehydrogenase YP_003198796.1 2215825 R 485915 CDS YP_003198797.1 258406055 8419780 complement(2216869..2217996) 1 NC_013223.1 PFAM: Radical SAM domain protein; KEGG: dma:DMR_45420 hypothetical protein; radical SAM protein 2217996 8419780 Dret_1935 Desulfohalobium retbaense DSM 5692 radical SAM protein YP_003198797.1 2216869 R 485915 CDS YP_003198798.1 258406056 8419781 complement(2217993..2219000) 1 NC_013223.1 KEGG: dma:DMR_45410 hypothetical protein; hypothetical protein 2219000 8419781 Dret_1936 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198798.1 2217993 R 485915 CDS YP_003198799.1 258406057 8419782 2219266..2221323 1 NC_013223.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2221323 8419782 Dret_1937 Desulfohalobium retbaense DSM 5692 elongation factor G YP_003198799.1 2219266 D 485915 CDS YP_003198800.1 258406058 8419783 2221721..2222464 1 NC_013223.1 KEGG: dma:DMR_37970 acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 2222464 8419783 Dret_1938 Desulfohalobium retbaense DSM 5692 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_003198800.1 2221721 D 485915 CDS YP_003198801.1 258406059 8419784 2222434..2224101 1 NC_013223.1 PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: dma:DMR_37960 hypothetical protein; beta-lactamase domain-containing protein 2224101 8419784 Dret_1939 Desulfohalobium retbaense DSM 5692 beta-lactamase domain-containing protein YP_003198801.1 2222434 D 485915 CDS YP_003198802.1 258406060 8419785 2224319..2225068 1 NC_013223.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: dde:Dde_1138 5-oxopent-3-ene-1,2,5- tricarboxylate decarboxylase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 2225068 8419785 Dret_1940 Desulfohalobium retbaense DSM 5692 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_003198802.1 2224319 D 485915 CDS YP_003198803.1 258406061 8419786 2225261..2226049 1 NC_013223.1 TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: dvl:Dvul_2108 30S ribosomal protein S2; 30S ribosomal protein S2 2226049 8419786 Dret_1941 Desulfohalobium retbaense DSM 5692 30S ribosomal protein S2 YP_003198803.1 2225261 D 485915 CDS YP_003198804.1 258406062 8419787 2226051..2226911 1 NC_013223.1 TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; KEGG: dvl:Dvul_2109 elongation factor Ts; translation elongation factor Ts 2226911 8419787 Dret_1942 Desulfohalobium retbaense DSM 5692 translation elongation factor Ts YP_003198804.1 2226051 D 485915 CDS YP_003198805.1 258406063 8419788 2226959..2227678 1 NC_013223.1 KEGG: dvl:Dvul_2111 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; uridylate kinase 2227678 8419788 Dret_1943 Desulfohalobium retbaense DSM 5692 uridylate kinase YP_003198805.1 2226959 D 485915 CDS YP_003198806.1 258406064 8419789 2227683..2228237 1 NC_013223.1 TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: dde:Dde_1128 ribosome recycling factor; ribosome recycling factor 2228237 8419789 Dret_1944 Desulfohalobium retbaense DSM 5692 ribosome recycling factor YP_003198806.1 2227683 D 485915 CDS YP_003198807.1 258406065 8419790 2228441..2229136 1 NC_013223.1 KEGG: dvu:DVU0869 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; UDP diphosphate synthase 2229136 8419790 Dret_1945 Desulfohalobium retbaense DSM 5692 UDP diphosphate synthase YP_003198807.1 2228441 D 485915 CDS YP_003198808.1 258406066 8419791 2229144..2229944 1 NC_013223.1 PFAM: phosphatidate cytidylyltransferase; KEGG: dvl:Dvul_2114 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 2229944 8419791 Dret_1946 Desulfohalobium retbaense DSM 5692 phosphatidate cytidylyltransferase YP_003198808.1 2229144 D 485915 CDS YP_003198809.1 258406067 8419792 2229941..2231170 1 NC_013223.1 KEGG: dde:Dde_1123 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2231170 8419792 Dret_1947 Desulfohalobium retbaense DSM 5692 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_003198809.1 2229941 D 485915 CDS YP_003198810.1 258406068 8419793 2231180..2232250 1 NC_013223.1 KEGG: dde:Dde_1122 peptidase RseP; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc metalloprotease 2232250 8419793 Dret_1948 Desulfohalobium retbaense DSM 5692 membrane-associated zinc metalloprotease YP_003198810.1 2231180 D 485915 CDS YP_003198811.1 258406069 8419794 2232222..2232983 1 NC_013223.1 PFAM: peptidase M22 glycoprotease; KEGG: dvu:DVU0864 glycoprotease family protein, putative; peptidase M22 glycoprotease 2232983 8419794 Dret_1949 Desulfohalobium retbaense DSM 5692 peptidase M22 glycoprotease YP_003198811.1 2232222 D 485915 CDS YP_003198812.1 258406070 8419795 2233145..2233651 1 NC_013223.1 PFAM: iron dependent repressor; regulatory protein MarR; SMART: iron dependent repressor; KEGG: sfu:Sfum_3768 iron (metal) dependent repressor, DtxR family; DtxR family iron (metal) dependent repressor 2233651 8419795 Dret_1950 Desulfohalobium retbaense DSM 5692 DtxR family iron (metal) dependent repressor YP_003198812.1 2233145 D 485915 CDS YP_003198813.1 258406071 8419796 2233732..2234697 1 NC_013223.1 TIGRFAM: MJ0042 family finger-like protein; PFAM: Protein of unknown function DUF2143; KEGG: dvu:DVU0859 hypothetical protein; hypothetical protein 2234697 8419796 Dret_1951 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198813.1 2233732 D 485915 CDS YP_003198814.1 258406072 8419797 2234708..2235046 1 NC_013223.1 KEGG: dvm:DvMF_2907 hypothetical protein; hypothetical protein 2235046 8419797 Dret_1952 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198814.1 2234708 D 485915 CDS YP_003198815.1 258406073 8419798 2235648..2236832 1 NC_013223.1 PFAM: Radical SAM domain protein; KEGG: dvl:Dvul_2126 radical SAM domain-containing protein; radical SAM protein 2236832 8419798 Dret_1953 Desulfohalobium retbaense DSM 5692 radical SAM protein YP_003198815.1 2235648 D 485915 CDS YP_003198816.1 258406074 8419799 2236942..2237919 1 NC_013223.1 PFAM: delta-aminolevulinic acid dehydratase; KEGG: dma:DMR_04460 delta-aminolevulinic acid dehydratase; porphobilinogen synthase 2237919 8419799 Dret_1954 Desulfohalobium retbaense DSM 5692 porphobilinogen synthase YP_003198816.1 2236942 D 485915 CDS YP_003198817.1 258406075 8419800 2238023..2239114 1 NC_013223.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dma:DMR_04480 hypothetical protein; radical SAM protein 2239114 8419800 Dret_1955 Desulfohalobium retbaense DSM 5692 radical SAM protein YP_003198817.1 2238023 D 485915 CDS YP_003198818.1 258406076 8419801 2239198..2239695 1 NC_013223.1 SMART: Transcription regulator, AsnC-type; KEGG: dde:Dde_2578 AsnC family transcriptional regulator; putative transcriptional regulator, AsnC family 2239695 8419801 Dret_1956 Desulfohalobium retbaense DSM 5692 putative transcriptional regulator, AsnC family YP_003198818.1 2239198 D 485915 CDS YP_003198819.1 258406077 8419802 2239692..2240369 1 NC_013223.1 KEGG: dma:DMR_38890 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 2240369 8419802 Dret_1957 Desulfohalobium retbaense DSM 5692 ribulose-phosphate 3-epimerase YP_003198819.1 2239692 D 485915 CDS YP_003198820.1 258406078 8419803 2240728..2241195 1 NC_013223.1 PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type; KEGG: dma:DMR_43700 AsnC family transcriptional regulator; transcriptional regulator, AsnC family 2241195 8419803 Dret_1958 Desulfohalobium retbaense DSM 5692 transcriptional regulator, AsnC family YP_003198820.1 2240728 D 485915 CDS YP_003198821.1 258406079 8419804 2241236..2244241 1 NC_013223.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: dvl:Dvul_0070 putative delta-1-pyrroline-5- carboxylate dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase 2244241 8419804 Dret_1959 Desulfohalobium retbaense DSM 5692 delta-1-pyrroline-5-carboxylate dehydrogenase YP_003198821.1 2241236 D 485915 CDS YP_003198822.1 258406080 8419805 2244324..2244437 1 NC_013223.1 hypothetical protein 2244437 8419805 Dret_1960 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198822.1 2244324 D 485915 CDS YP_003198823.1 258406081 8419806 2244434..2245882 1 NC_013223.1 TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pla:Plav_3085 sodium/proline symporter; sodium/proline symporter 2245882 8419806 Dret_1961 Desulfohalobium retbaense DSM 5692 sodium/proline symporter YP_003198823.1 2244434 D 485915 CDS YP_003198824.1 258406082 8419807 complement(2246298..2246966) 1 NC_013223.1 KEGG: dma:DMR_05440 hypothetical protein; hypothetical protein 2246966 8419807 Dret_1962 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198824.1 2246298 R 485915 CDS YP_003198825.1 258406083 8419808 complement(2246979..2248202) 1 NC_013223.1 KEGG: dma:DMR_05430 quinone-interacting membrane- bound oxidoreductase complex subunit C; quinone-interacting membrane-bound oxidoreductase complex subunit C 2248202 8419808 Dret_1963 Desulfohalobium retbaense DSM 5692 quinone-interacting membrane-bound oxidoreductase complex subunit C YP_003198825.1 2246979 R 485915 CDS YP_003198826.1 258406084 8419809 complement(2248215..2250515) 1 NC_013223.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: dvu:DVU0849 heterodisulfide reductase, iron- sulfur-binding subunit, putative; methyl-viologen-reducing hydrogenase delta subunit 2250515 8419809 Dret_1964 Desulfohalobium retbaense DSM 5692 methyl-viologen-reducing hydrogenase delta subunit YP_003198826.1 2248215 R 485915 CDS YP_003198827.1 258406085 8419810 complement(2250520..2251755) 1 NC_013223.1 KEGG: dma:DMR_05410 quinone-interacting membrane- bound oxidoreductase complex subunit A; quinone-interacting membrane-bound oxidoreductase complex subunit A 2251755 8419810 Dret_1965 Desulfohalobium retbaense DSM 5692 quinone-interacting membrane-bound oxidoreductase complex subunit A YP_003198827.1 2250520 R 485915 CDS YP_003198828.1 258406086 8419811 complement(2252103..2254106) 1 NC_013223.1 catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; adenylylsulfate reductase subunit alpha 2254106 8419811 Dret_1966 Desulfohalobium retbaense DSM 5692 adenylylsulfate reductase subunit alpha YP_003198828.1 2252103 R 485915 CDS YP_003198829.1 258406087 8419812 complement(2254155..2254658) 1 NC_013223.1 TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2137 adenylylsulfate reductase, beta subunit; adenylylsulfate reductase subunit beta 2254658 8419812 Dret_1967 Desulfohalobium retbaense DSM 5692 adenylylsulfate reductase subunit beta YP_003198829.1 2254155 R 485915 CDS YP_003198830.1 258406088 8419813 complement(2254963..2256267) 1 NC_013223.1 KEGG: dma:DMR_39470 putative sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase; sulfate adenylyltransferase 2256267 8419813 Dret_1968 Desulfohalobium retbaense DSM 5692 sulfate adenylyltransferase YP_003198830.1 2254963 R 485915 CDS YP_003198831.1 258406089 8419814 complement(2256720..2258168) 1 NC_013223.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: dal:Dalk_0381 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 2258168 8419814 Dret_1969 Desulfohalobium retbaense DSM 5692 TrkH family potassium uptake protein YP_003198831.1 2256720 R 485915 CDS YP_003198832.1 258406090 8419815 complement(2258171..2259532) 1 NC_013223.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 2259532 trkA 8419815 trkA Desulfohalobium retbaense DSM 5692 potassium transporter peripheral membrane protein YP_003198832.1 2258171 R 485915 CDS YP_003198833.1 258406091 8419816 2260028..2260792 1 NC_013223.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dvm:DvMF_2816 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2260792 8419816 Dret_1971 Desulfohalobium retbaense DSM 5692 short-chain dehydrogenase/reductase SDR YP_003198833.1 2260028 D 485915 CDS YP_003198834.1 258406092 8419817 2261046..2261396 1 NC_013223.1 KEGG: sfu:Sfum_0244 hypothetical protein; hypothetical protein 2261396 8419817 Dret_1972 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198834.1 2261046 D 485915 CDS YP_003198835.1 258406093 8419818 2261405..2263048 1 NC_013223.1 PFAM: ABC-1 domain protein; KEGG: pca:Pcar_2342 ubiquinone biosynthesis protein AarF, putative; ABC transporter 2263048 8419818 Dret_1973 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003198835.1 2261405 D 485915 CDS YP_003198836.1 258406094 8419819 2263071..2263625 1 NC_013223.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_1591 hypothetical protein; metal dependent phosphohydrolase 2263625 8419819 Dret_1974 Desulfohalobium retbaense DSM 5692 metal dependent phosphohydrolase YP_003198836.1 2263071 D 485915 CDS YP_003198837.1 258406095 8419820 complement(2263632..2267030) 1 NC_013223.1 PFAM: UvrD/REP helicase; KEGG: noc:Noc_0988 UvrD/REP helicase; UvrD/REP helicase 2267030 8419820 Dret_1975 Desulfohalobium retbaense DSM 5692 UvrD/REP helicase YP_003198837.1 2263632 R 485915 CDS YP_003198838.1 258406096 8419821 complement(2267030..2267434) 1 NC_013223.1 PFAM: VanZ family protein; KEGG: reh:H16_A1479 hypothetical protein; VanZ family protein 2267434 8419821 Dret_1976 Desulfohalobium retbaense DSM 5692 VanZ family protein YP_003198838.1 2267030 R 485915 CDS YP_003198839.1 258406097 8419822 complement(2267487..2270228) 1 NC_013223.1 TIGRFAM: probable DNA repair protein; KEGG: noc:Noc_0987 hypothetical protein; putative DNA repair protein 2270228 8419822 Dret_1977 Desulfohalobium retbaense DSM 5692 putative DNA repair protein YP_003198839.1 2267487 R 485915 CDS YP_003198840.1 258406098 8419823 complement(2270304..2271524) 1 NC_013223.1 TIGRFAM: glycogen synthase; PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_3629 glycosyl transferase, group 1; glycogen synthase 2271524 8419823 Dret_1978 Desulfohalobium retbaense DSM 5692 glycogen synthase YP_003198840.1 2270304 R 485915 CDS YP_003198841.1 258406099 8419824 complement(2271877..2273157) 1 NC_013223.1 PFAM: protein of unknown function DUF401; KEGG: dde:Dde_2515 hypothetical protein; hypothetical protein 2273157 8419824 Dret_1979 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198841.1 2271877 R 485915 CDS YP_003198842.1 258406100 8419825 2273412..2274041 1 NC_013223.1 PFAM: NUDIX hydrolase; KEGG: ecq:ECED1_1012 putative NUDIX hydrolase; NUDIX hydrolase 2274041 8419825 Dret_1980 Desulfohalobium retbaense DSM 5692 NUDIX hydrolase YP_003198842.1 2273412 D 485915 CDS YP_003198843.1 258406101 8419826 2274357..2275508 1 NC_013223.1 KEGG: dma:DMR_33400 hypothetical protein; hypothetical protein 2275508 8419826 Dret_1981 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198843.1 2274357 D 485915 CDS YP_003198844.1 258406102 8419827 2275588..2275857 1 NC_013223.1 KEGG: tcx:Tcr_1766 hypothetical protein; hypothetical protein 2275857 8419827 Dret_1982 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198844.1 2275588 D 485915 CDS YP_003198845.1 258406103 8419828 2275982..2277628 1 NC_013223.1 PFAM: PhoU family protein; aminoglycoside phosphotransferase; KEGG: dma:DMR_18080 hypothetical protein; phosphate uptake regulator PhoU 2277628 8419828 Dret_1983 Desulfohalobium retbaense DSM 5692 phosphate uptake regulator PhoU YP_003198845.1 2275982 D 485915 CDS YP_003198846.1 258406104 8419829 2277796..2278674 1 NC_013223.1 PFAM: RimK domain protein ATP-grasp; KEGG: dma:DMR_18070 hypothetical protein; RimK domain-containing protein ATP-grasp 2278674 8419829 Dret_1984 Desulfohalobium retbaense DSM 5692 RimK domain-containing protein ATP-grasp YP_003198846.1 2277796 D 485915 CDS YP_003198847.1 258406105 8419830 2278772..2279899 1 NC_013223.1 KEGG: dma:DMR_18060 hypothetical protein; HPr kinase 2279899 8419830 Dret_1985 Desulfohalobium retbaense DSM 5692 HPr kinase YP_003198847.1 2278772 D 485915 CDS YP_003198848.1 258406106 8419831 2279869..2281074 1 NC_013223.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: dde:Dde_3600 hypothetical protein; hypothetical protein 2281074 8419831 Dret_1986 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198848.1 2279869 D 485915 CDS YP_003198849.1 258406107 8419832 2281270..2281635 1 NC_013223.1 KEGG: dvm:DvMF_2199 hypothetical protein; hypothetical protein 2281635 8419832 Dret_1987 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198849.1 2281270 D 485915 CDS YP_003198850.1 258406108 8419833 complement(2281817..2282560) 1 NC_013223.1 KEGG: dol:Dole_2867 hypothetical protein; hypothetical protein 2282560 8419833 Dret_1988 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198850.1 2281817 R 485915 CDS YP_003198851.1 258406109 8419834 complement(2282805..2285267) 1 NC_013223.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_3613 glycosyl transferase domain- containing protein; group 1 glycosyl transferase 2285267 8419834 Dret_1989 Desulfohalobium retbaense DSM 5692 group 1 glycosyl transferase YP_003198851.1 2282805 R 485915 CDS YP_003198852.1 258406110 8419835 complement(2285460..2286704) 1 NC_013223.1 PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein; KEGG: dde:Dde_2343 diguanylate phosphodiesterase; diguanylate phosphodiesterase 2286704 8419835 Dret_1990 Desulfohalobium retbaense DSM 5692 diguanylate phosphodiesterase YP_003198852.1 2285460 R 485915 CDS YP_003198853.1 258406111 8419836 2287245..2289110 1 NC_013223.1 KEGG: dvm:DvMF_1024 hypothetical protein; Tfp pilus assembly protein ATPase PilM-like protein 2289110 8419836 Dret_1991 Desulfohalobium retbaense DSM 5692 Tfp pilus assembly protein ATPase PilM-like protein YP_003198853.1 2287245 D 485915 CDS YP_003198854.1 258406112 8419837 2289112..2289690 1 NC_013223.1 KEGG: dvl:Dvul_1789 hypothetical protein; hypothetical protein 2289690 8419837 Dret_1992 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198854.1 2289112 D 485915 CDS YP_003198855.1 258406113 8419838 2289730..2290215 1 NC_013223.1 KEGG: dvl:Dvul_1790 hypothetical protein; hypothetical protein 2290215 8419838 Dret_1993 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198855.1 2289730 D 485915 CDS YP_003198856.1 258406114 8419839 2290231..2291730 1 NC_013223.1 PFAM: type II and III secretion system protein; KEGG: dal:Dalk_4815 type II and III secretion system protein; type II and III secretion system protein 2291730 8419839 Dret_1994 Desulfohalobium retbaense DSM 5692 type II and III secretion system protein YP_003198856.1 2290231 D 485915 CDS YP_003198857.1 258406115 8419840 2291774..2293423 1 NC_013223.1 PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: dal:Dalk_4816 type II secretory pathway component ExeA (predicted ATPase)-like protein; Peptidoglycan-binding lysin domain-containing protein 2293423 8419840 Dret_1995 Desulfohalobium retbaense DSM 5692 Peptidoglycan-binding lysin domain-containing protein YP_003198857.1 2291774 D 485915 CDS YP_003198858.1 258406116 8419841 2293439..2295142 1 NC_013223.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: dvm:DvMF_1028 type II secretion system protein E; type II secretion system protein E 2295142 8419841 Dret_1996 Desulfohalobium retbaense DSM 5692 type II secretion system protein E YP_003198858.1 2293439 D 485915 CDS YP_003198859.1 258406117 8419842 2295167..2296390 1 NC_013223.1 PFAM: Type II secretion system F domain; KEGG: dvm:DvMF_1029 type II secretion system protein; type II secretion system F domain-containing protein 2296390 8419842 Dret_1997 Desulfohalobium retbaense DSM 5692 type II secretion system F domain-containing protein YP_003198859.1 2295167 D 485915 CDS YP_003198860.1 258406118 8419843 complement(2296703..2297578) 1 NC_013223.1 KEGG: GM23831 gene product from transcript GM23831- RA; hypothetical protein 2297578 8419843 Dret_1998 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198860.1 2296703 R 485915 CDS YP_003198861.1 258406119 8419844 complement(2297640..2298005) 1 NC_013223.1 KEGG: aha:AHA_0398 putative msha biogenesis protein msho; hypothetical protein 2298005 8419844 Dret_1999 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198861.1 2297640 R 485915 CDS YP_003198862.1 258406120 8419845 complement(2298015..2298371) 1 NC_013223.1 hypothetical protein 2298371 8419845 Dret_2000 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198862.1 2298015 R 485915 CDS YP_003198863.1 258406121 8419846 complement(2298386..2298889) 1 NC_013223.1 KEGG: hha:Hhal_0319 hypothetical protein; hypothetical protein 2298889 8419846 Dret_2001 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198863.1 2298386 R 485915 CDS YP_003198864.1 258406122 8419847 2299335..2300561 1 NC_013223.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: glo:Glov_2843 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 2300561 8419847 Dret_2002 Desulfohalobium retbaense DSM 5692 transposase IS204/IS1001/IS1096/IS1165 family protein YP_003198864.1 2299335 D 485915 CDS YP_003198865.1 258406123 8419848 complement(2301299..2301841) 1 NC_013223.1 KEGG: rfr:Rfer_3364 hypothetical protein; hypothetical protein 2301841 8419848 Dret_2003 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198865.1 2301299 R 485915 CDS YP_003198866.1 258406124 8419849 2302416..2303030 1 NC_013223.1 KEGG: dvm:DvMF_0918 hypothetical protein; hypothetical protein 2303030 8419849 Dret_2004 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198866.1 2302416 D 485915 CDS YP_003198867.1 258406125 8419850 2303031..2303570 1 NC_013223.1 KEGG: dde:Dde_2592 hypothetical protein; hypothetical protein 2303570 8419850 Dret_2005 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198867.1 2303031 D 485915 CDS YP_003198868.1 258406126 8419851 complement(2303845..2304834) 1 NC_013223.1 KEGG: dvl:Dvul_2811 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase 2304834 8419851 Dret_2006 Desulfohalobium retbaense DSM 5692 thiamine-monophosphate kinase YP_003198868.1 2303845 R 485915 CDS YP_003198869.1 258406127 8419852 complement(2304961..2307105) 1 NC_013223.1 PFAM: UvrD/REP helicase; KEGG: dvu:DVU0156 ATP-dependent DNA helicase UvrD; UvrD/REP helicase 2307105 8419852 Dret_2007 Desulfohalobium retbaense DSM 5692 UvrD/REP helicase YP_003198869.1 2304961 R 485915 CDS YP_003198870.1 258406128 8419853 complement(2307121..2307747) 1 NC_013223.1 KEGG: pla:Plav_0995 TonB family protein; hypothetical protein 2307747 8419853 Dret_2008 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198870.1 2307121 R 485915 CDS YP_003198871.1 258406129 8419854 complement(2307722..2308342) 1 NC_013223.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dvl:Dvul_0799 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2308342 8419854 Dret_2009 Desulfohalobium retbaense DSM 5692 metal dependent phosphohydrolase YP_003198871.1 2307722 R 485915 CDS YP_003198872.1 258406130 8419855 complement(2308394..2309572) 1 NC_013223.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 2309572 argJ 8419855 argJ Desulfohalobium retbaense DSM 5692 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_003198872.1 2308394 R 485915 CDS YP_003198873.1 258406131 8419856 complement(2309679..2312189) 1 NC_013223.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 2312189 8419856 Dret_2011 Desulfohalobium retbaense DSM 5692 preprotein translocase subunit SecA YP_003198873.1 2309679 R 485915 CDS YP_003198874.1 258406132 8419857 complement(2312200..2313354) 1 NC_013223.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dde:Dde_1085 glycolate oxidase, iron-sulfur subunit, putative; hypothetical protein 2313354 8419857 Dret_2012 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198874.1 2312200 R 485915 CDS YP_003198875.1 258406133 8419858 complement(2313354..2314748) 1 NC_013223.1 PFAM: FAD linked oxidase domain protein; KEGG: dvu:DVU0827 glycolate oxidase, subunit GlcD, putative; FAD linked oxidase domain-containing protein 2314748 8419858 Dret_2013 Desulfohalobium retbaense DSM 5692 FAD linked oxidase domain-containing protein YP_003198875.1 2313354 R 485915 CDS YP_003198876.1 258406134 8419859 complement(2314763..2315218) 1 NC_013223.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2315218 smpB 8419859 smpB Desulfohalobium retbaense DSM 5692 SsrA-binding protein YP_003198876.1 2314763 R 485915 CDS YP_003198877.1 258406135 8419860 complement(2315311..2317110) 1 NC_013223.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; KEGG: dma:DMR_07500 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 2317110 8419860 Dret_2015 Desulfohalobium retbaense DSM 5692 phosphoenolpyruvate-protein phosphotransferase YP_003198877.1 2315311 R 485915 CDS YP_003198878.1 258406136 8419861 complement(2317111..2317446) 1 NC_013223.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: dvl:Dvul_2151 phosphotransferase system, phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr 2317446 8419861 Dret_2016 Desulfohalobium retbaense DSM 5692 phosphotransferase system, phosphocarrier protein HPr YP_003198878.1 2317111 R 485915 CDS YP_003198879.1 258406137 8419862 complement(2317471..2318208) 1 NC_013223.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: dvm:DvMF_2879 PTS system mannose/fructose/sorbose family IID component; PTS system mannose/fructose/sorbose family transporter subunit IID 2318208 8419862 Dret_2017 Desulfohalobium retbaense DSM 5692 PTS system mannose/fructose/sorbose family transporter subunit IID YP_003198879.1 2317471 R 485915 CDS YP_003198880.1 258406138 8419863 complement(2318217..2319056) 1 NC_013223.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dvl:Dvul_2149 uroporphyrin-III C/tetrapyrrole methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 2319056 8419863 Dret_2018 Desulfohalobium retbaense DSM 5692 uroporphyrin-III C/tetrapyrrole methyltransferase YP_003198880.1 2318217 R 485915 CDS YP_003198881.1 258406139 8419864 complement(2318998..2319402) 1 NC_013223.1 PFAM: protein of unknown function UPF0102; KEGG: dvl:Dvul_2148 hypothetical protein; hypothetical protein 2319402 8419864 Dret_2019 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198881.1 2318998 R 485915 CDS YP_003198882.1 258406140 8419865 complement(2319384..2319977) 1 NC_013223.1 PFAM: ribonuclease HII/HIII; KEGG: dma:DMR_34650 ribonuclease HII; Ribonuclease H 2319977 8419865 Dret_2020 Desulfohalobium retbaense DSM 5692 Ribonuclease H YP_003198882.1 2319384 R 485915 CDS YP_003198883.1 258406141 8419866 complement(2320156..2320512) 1 NC_013223.1 TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; KEGG: dvl:Dvul_2146 50S ribosomal protein L19; 50S ribosomal protein L19 2320512 8419866 Dret_2021 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L19 YP_003198883.1 2320156 R 485915 CDS YP_003198884.1 258406142 8419867 complement(2320615..2321892) 1 NC_013223.1 KEGG: dde:Dde_1096 tRNA (guanine37-N1) methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: Protein of unknown function DUF2168; tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase 2321892 8419867 Dret_2022 Desulfohalobium retbaense DSM 5692 tRNA (guanine-N1)-methyltransferase YP_003198884.1 2320615 R 485915 CDS YP_003198885.1 258406143 8419868 complement(2321915..2322463) 1 NC_013223.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: dvl:Dvul_2144 16S rRNA processing protein RimM; 16S rRNA processing protein RimM 2322463 8419868 Dret_2023 Desulfohalobium retbaense DSM 5692 16S rRNA processing protein RimM YP_003198885.1 2321915 R 485915 CDS YP_003198886.1 258406144 8419869 complement(2322478..2322711) 1 NC_013223.1 KEGG: dma:DMR_34690 hypothetical protein; hypothetical protein 2322711 8419869 Dret_2024 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198886.1 2322478 R 485915 CDS YP_003198887.1 258406145 8419870 complement(2322839..2323084) 1 NC_013223.1 TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: dma:DMR_34700 30S ribosomal protein S16; 30S ribosomal protein S16 2323084 8419870 Dret_2025 Desulfohalobium retbaense DSM 5692 30S ribosomal protein S16 YP_003198887.1 2322839 R 485915 CDS YP_003198888.1 258406146 8419871 complement(2323292..2324773) 1 NC_013223.1 KEGG: dma:DMR_34710 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein 2324773 8419871 Dret_2026 Desulfohalobium retbaense DSM 5692 signal recognition particle protein YP_003198888.1 2323292 R 485915 CDS YP_003198889.1 258406147 8419872 complement(2324906..2326096) 1 NC_013223.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 2326096 8419872 Dret_2027 Desulfohalobium retbaense DSM 5692 aspartate aminotransferase YP_003198889.1 2324906 R 485915 CDS YP_003198890.1 258406148 8419873 2326508..2327236 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2763 ATPase; ABC transporter 2327236 8419873 Dret_2028 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003198890.1 2326508 D 485915 CDS YP_003198891.1 258406149 8419874 2327433..2328260 1 NC_013223.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: dde:Dde_2764 extracellular solute-binding protein; family 3 extracellular solute-binding protein 2328260 8419874 Dret_2029 Desulfohalobium retbaense DSM 5692 family 3 extracellular solute-binding protein YP_003198891.1 2327433 D 485915 CDS YP_003198892.1 258406150 8419875 2328546..2330342 1 NC_013223.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvu:DVU0751 His/Glu/Gln/Arg/opine ABC transporter permease; polar amino acid ABC transporter inner membrane subunit 2330342 8419875 Dret_2030 Desulfohalobium retbaense DSM 5692 polar amino acid ABC transporter inner membrane subunit YP_003198892.1 2328546 D 485915 CDS YP_003198893.1 258406151 8419876 2330350..2331108 1 NC_013223.1 PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: dde:Dde_1404 NCAIR mutase (PurE)-related proteins-like; 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase 2331108 8419876 Dret_2031 Desulfohalobium retbaense DSM 5692 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase YP_003198893.1 2330350 D 485915 CDS YP_003198894.1 258406152 8419877 2331312..2332379 1 NC_013223.1 PFAM: glycosyl transferase group 1; KEGG: dvu:DVU1061 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 2332379 8419877 Dret_2032 Desulfohalobium retbaense DSM 5692 group 1 glycosyl transferase YP_003198894.1 2331312 D 485915 CDS YP_003198895.1 258406153 8419878 complement(2332848..2333129) 1 NC_013223.1 TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: cjr:CJE0010 competence protein ComEA; competence protein ComEA 2333129 8419878 Dret_2033 Desulfohalobium retbaense DSM 5692 competence protein ComEA YP_003198895.1 2332848 R 485915 CDS YP_003198896.1 258406154 8419879 complement(2333408..2335123) 1 NC_013223.1 in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from Escherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase 2335123 8419879 Dret_2034 Desulfohalobium retbaense DSM 5692 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase YP_003198896.1 2333408 R 485915 CDS YP_003198897.1 258406155 8419880 complement(2335496..2337040) 1 NC_013223.1 PFAM: ferredoxin; KEGG: dma:DMR_17970 hypothetical protein; ferredoxin 2337040 8419880 Dret_2035 Desulfohalobium retbaense DSM 5692 ferredoxin YP_003198897.1 2335496 R 485915 CDS YP_003198898.1 258406156 8419881 complement(2337049..2338005) 1 NC_013223.1 TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dma:DMR_20900 selenide, water dikinase; selenide, water dikinase 2338005 8419881 Dret_2036 Desulfohalobium retbaense DSM 5692 selenide, water dikinase YP_003198898.1 2337049 R 485915 CDS YP_003198899.1 258406157 8419882 complement(2338082..2338996) 1 NC_013223.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dma:DMR_12480 LysR family transcriptional regulator; LysR family transcriptional regulator 2338996 8419882 Dret_2037 Desulfohalobium retbaense DSM 5692 LysR family transcriptional regulator YP_003198899.1 2338082 R 485915 CDS YP_003198900.1 258406158 8419883 complement(2339318..2339716) 1 NC_013223.1 TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: dvl:Dvul_1738 50S ribosomal protein L17; 50S ribosomal protein L17 2339716 8419883 Dret_2038 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L17 YP_003198900.1 2339318 R 485915 CDS YP_003198901.1 258406159 8419884 complement(2339706..2340749) 1 NC_013223.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 2340749 8419884 Dret_2039 Desulfohalobium retbaense DSM 5692 DNA-directed RNA polymerase subunit alpha YP_003198901.1 2339706 R 485915 CDS YP_003198902.1 258406160 8419885 complement(2340761..2341387) 1 NC_013223.1 KEGG: dds:Ddes_0685 ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; 30S ribosomal protein S4 2341387 8419885 Dret_2040 Desulfohalobium retbaense DSM 5692 30S ribosomal protein S4 YP_003198902.1 2340761 R 485915 CDS YP_003198903.1 258406161 8419886 complement(2341415..2341810) 1 NC_013223.1 TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11; KEGG: dvl:Dvul_1741 30S ribosomal protein S11; 30S ribosomal protein S11 2341810 8419886 Dret_2041 Desulfohalobium retbaense DSM 5692 30S ribosomal protein S11 YP_003198903.1 2341415 R 485915 CDS YP_003198904.1 258406162 8419887 complement(2341835..2342206) 1 NC_013223.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 2342206 rpsM 8419887 rpsM Desulfohalobium retbaense DSM 5692 30S ribosomal protein S13 YP_003198904.1 2341835 R 485915 CDS YP_003198905.1 258406163 8419888 complement(2342223..2342336) 1 NC_013223.1 TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: dvl:Dvul_1743 50S ribosomal protein L36; 50S ribosomal protein L36 2342336 8419888 Dret_2043 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L36 YP_003198905.1 2342223 R 485915 CDS YP_003198906.1 258406164 8419889 complement(2342365..2343129) 1 NC_013223.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dde:Dde_2236 methionine aminopeptidase, type I; methionine aminopeptidase 2343129 8419889 Dret_2044 Desulfohalobium retbaense DSM 5692 methionine aminopeptidase YP_003198906.1 2342365 R 485915 CDS YP_003198907.1 258406165 8419890 complement(2343132..2344439) 1 NC_013223.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: dde:Dde_2237 preprotein translocase subunit SecY; preprotein translocase subunit SecY 2344439 8419890 Dret_2045 Desulfohalobium retbaense DSM 5692 preprotein translocase subunit SecY YP_003198907.1 2343132 R 485915 CDS YP_003198908.1 258406166 8419891 complement(2344444..2344890) 1 NC_013223.1 late assembly protein; 50S ribosomal protein L15 2344890 rplO 8419891 rplO Desulfohalobium retbaense DSM 5692 50S ribosomal protein L15 YP_003198908.1 2344444 R 485915 CDS YP_003198909.1 258406167 8419892 complement(2344877..2345059) 1 NC_013223.1 TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: dde:Dde_2239 50S ribosomal protein L30; 50S ribosomal protein L30 2345059 8419892 Dret_2047 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L30 YP_003198909.1 2344877 R 485915 CDS YP_003198910.1 258406168 8419893 complement(2345069..2345560) 1 NC_013223.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 2345560 rpsE 8419893 rpsE Desulfohalobium retbaense DSM 5692 30S ribosomal protein S5 YP_003198910.1 2345069 R 485915 CDS YP_003198911.1 258406169 8419894 complement(2345574..2345924) 1 NC_013223.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: dma:DMR_12360 50S ribosomal protein L18; 50S ribosomal protein L18 2345924 8419894 Dret_2049 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L18 YP_003198911.1 2345574 R 485915 CDS YP_003198912.1 258406170 8419895 complement(2345934..2346470) 1 NC_013223.1 TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; KEGG: dvm:DvMF_0094 50S ribosomal protein L6; 50S ribosomal protein L6 2346470 8419895 Dret_2050 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L6 YP_003198912.1 2345934 R 485915 CDS YP_003198913.1 258406171 8419896 complement(2346484..2346867) 1 NC_013223.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 2346867 rpsH 8419896 rpsH Desulfohalobium retbaense DSM 5692 30S ribosomal protein S8 YP_003198913.1 2346484 R 485915 CDS YP_003198914.1 258406172 8419897 complement(2346881..2347066) 1 NC_013223.1 PFAM: ribosomal protein S14; KEGG: dma:DMR_12330 30S ribosomal protein S14; 30S ribosomal protein S14 2347066 8419897 Dret_2052 Desulfohalobium retbaense DSM 5692 30S ribosomal protein S14 YP_003198914.1 2346881 R 485915 CDS YP_003198915.1 258406173 8419898 complement(2347077..2347616) 1 NC_013223.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 2347616 rplE 8419898 rplE Desulfohalobium retbaense DSM 5692 50S ribosomal protein L5 YP_003198915.1 2347077 R 485915 CDS YP_003198916.1 258406174 8419899 complement(2347626..2347949) 1 NC_013223.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 2347949 rplX 8419899 rplX Desulfohalobium retbaense DSM 5692 50S ribosomal protein L24 YP_003198916.1 2347626 R 485915 CDS YP_003198917.1 258406175 8419900 complement(2347961..2348329) 1 NC_013223.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: dde:Dde_2247 50S ribosomal protein L14; 50S ribosomal protein L14 2348329 8419900 Dret_2055 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L14 YP_003198917.1 2347961 R 485915 CDS YP_003198918.1 258406176 8419901 complement(2348339..2348605) 1 NC_013223.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 2348605 rpsQ 8419901 rpsQ Desulfohalobium retbaense DSM 5692 30S ribosomal protein S17 YP_003198918.1 2348339 R 485915 CDS YP_003198919.1 258406177 8419902 complement(2348598..2348801) 1 NC_013223.1 TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: dvl:Dvul_1757 50S ribosomal protein L29; 50S ribosomal protein L29 2348801 8419902 Dret_2057 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L29 YP_003198919.1 2348598 R 485915 CDS YP_003198920.1 258406178 8419903 complement(2348804..2349217) 1 NC_013223.1 TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; KEGG: lip:LI0967 50S ribosomal protein L16; 50S ribosomal protein L16 2349217 8419903 Dret_2058 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L16 YP_003198920.1 2348804 R 485915 CDS YP_003198921.1 258406179 8419904 complement(2349217..2349858) 1 NC_013223.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 2349858 rpsC 8419904 rpsC Desulfohalobium retbaense DSM 5692 30S ribosomal protein S3 YP_003198921.1 2349217 R 485915 CDS YP_003198922.1 258406180 8419905 complement(2349871..2350203) 1 NC_013223.1 TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: dde:Dde_2252 50S ribosomal protein L22; 50S ribosomal protein L22 2350203 8419905 Dret_2060 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L22 YP_003198922.1 2349871 R 485915 CDS YP_003198923.1 258406181 8419906 complement(2350218..2350490) 1 NC_013223.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: dde:Dde_2253 SSU ribosomal protein S19P; 30S ribosomal protein S19 2350490 8419906 Dret_2061 Desulfohalobium retbaense DSM 5692 30S ribosomal protein S19 YP_003198923.1 2350218 R 485915 CDS YP_003198924.1 258406182 8419907 complement(2350499..2351326) 1 NC_013223.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 2351326 rplB 8419907 rplB Desulfohalobium retbaense DSM 5692 50S ribosomal protein L2 YP_003198924.1 2350499 R 485915 CDS YP_003198925.1 258406183 8419908 complement(2351329..2351619) 1 NC_013223.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 2351619 rplW 8419908 rplW Desulfohalobium retbaense DSM 5692 50S ribosomal protein L23 YP_003198925.1 2351329 R 485915 CDS YP_003198926.1 258406184 8419909 complement(2351622..2352242) 1 NC_013223.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 2352242 rplD 8419909 rplD Desulfohalobium retbaense DSM 5692 50S ribosomal protein L4 YP_003198926.1 2351622 R 485915 CDS YP_003198927.1 258406185 8419910 complement(2352254..2352883) 1 NC_013223.1 TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3; KEGG: dvm:DvMF_0079 50S ribosomal protein L3; 50S ribosomal protein L3 2352883 8419910 Dret_2065 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L3 YP_003198927.1 2352254 R 485915 CDS YP_003198928.1 258406186 8419911 complement(2352895..2353212) 1 NC_013223.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 2353212 rpsJ 8419911 rpsJ Desulfohalobium retbaense DSM 5692 30S ribosomal protein S10 YP_003198928.1 2352895 R 485915 CDS YP_003198929.1 258406187 8419912 complement(2353218..2354414) 1 NC_013223.1 TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: dvl:Dvul_0447 elongation factor Tu; translation elongation factor Tu 2354414 8419912 Dret_2067 Desulfohalobium retbaense DSM 5692 translation elongation factor Tu YP_003198929.1 2353218 R 485915 CDS YP_003198930.1 258406188 8419913 complement(2354425..2356494) 1 NC_013223.1 TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: dma:DMR_12170 elongation factor G; translation elongation factor G 2356494 8419913 Dret_2068 Desulfohalobium retbaense DSM 5692 translation elongation factor G YP_003198930.1 2354425 R 485915 CDS YP_003198931.1 258406189 8419914 complement(2356507..2356977) 1 NC_013223.1 TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: dvm:DvMF_0076 30S ribosomal protein S7; 30S ribosomal protein S7 2356977 8419914 Dret_2069 Desulfohalobium retbaense DSM 5692 30S ribosomal protein S7 YP_003198931.1 2356507 R 485915 CDS YP_003198932.1 258406190 8419915 complement(2356990..2357361) 1 NC_013223.1 TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: dvl:Dvul_1770 30S ribosomal protein S12; 30S ribosomal protein S12 2357361 8419915 Dret_2070 Desulfohalobium retbaense DSM 5692 30S ribosomal protein S12 YP_003198932.1 2356990 R 485915 CDS YP_003198933.1 258406191 8419916 complement(2357452..2361609) 1 NC_013223.1 KEGG: dde:Dde_2998 DNA-directed RNA polymerase, acetylornithine deacetylase; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 2361609 8419916 Dret_2071 Desulfohalobium retbaense DSM 5692 DNA-directed RNA polymerase subunit beta' YP_003198933.1 2357452 R 485915 CDS YP_003198934.1 258406192 8419917 complement(2361673..2365764) 1 NC_013223.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 2365764 rpoB 8419917 rpoB Desulfohalobium retbaense DSM 5692 DNA-directed RNA polymerase subunit beta YP_003198934.1 2361673 R 485915 CDS YP_003198935.1 258406193 8419918 complement(2365999..2366385) 1 NC_013223.1 TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: dma:DMR_31170 50S ribosomal protein L7/L12; 50S ribosomal protein L7/L12 2366385 8419918 Dret_2073 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L7/L12 YP_003198935.1 2365999 R 485915 CDS YP_003198936.1 258406194 8419919 complement(2366415..2366933) 1 NC_013223.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 2366933 rplJ 8419919 rplJ Desulfohalobium retbaense DSM 5692 50S ribosomal protein L10 YP_003198936.1 2366415 R 485915 CDS YP_003198937.1 258406195 8419920 complement(2367080..2367784) 1 NC_013223.1 TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; KEGG: dvl:Dvul_0442 50S ribosomal protein L1; 50S ribosomal protein L1 2367784 8419920 Dret_2075 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L1 YP_003198937.1 2367080 R 485915 CDS YP_003198938.1 258406196 8419921 complement(2367802..2368227) 1 NC_013223.1 KEGG: dvm:DvMF_1451 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11; 50S ribosomal protein L11 2368227 8419921 Dret_2076 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L11 YP_003198938.1 2367802 R 485915 CDS YP_003198939.1 258406197 8419922 complement(2368294..2368833) 1 NC_013223.1 KEGG: dvm:DvMF_1450 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein; KOW domain protein; NusG antitermination factor 2368833 8419922 Dret_2077 Desulfohalobium retbaense DSM 5692 NusG antitermination factor YP_003198939.1 2368294 R 485915 CDS YP_003198940.1 258406198 8419923 complement(2368848..2369096) 1 NC_013223.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: dde:Dde_2990 preprotein translocase subunit SecE; Preprotein translocase subunit SecE 2369096 8419923 Dret_2078 Desulfohalobium retbaense DSM 5692 Preprotein translocase subunit SecE YP_003198940.1 2368848 R 485915 CDS YP_003198941.1 258406199 8419925 complement(2369204..2369353) 1 NC_013223.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 2369353 rpmG 8419925 rpmG Desulfohalobium retbaense DSM 5692 50S ribosomal protein L33 YP_003198941.1 2369204 R 485915 CDS YP_003198942.1 258406200 8419926 complement(2369357..2370553) 1 NC_013223.1 TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: dvl:Dvul_0447 elongation factor Tu; translation elongation factor Tu 2370553 8419926 Dret_2080 Desulfohalobium retbaense DSM 5692 translation elongation factor Tu YP_003198942.1 2369357 R 485915 CDS YP_003198943.1 258406201 8419931 complement(2371357..2372277) 1 NC_013223.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2372277 lpxC 8419931 lpxC Desulfohalobium retbaense DSM 5692 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_003198943.1 2371357 R 485915 CDS YP_003198944.1 258406202 8419932 complement(2372396..2373298) 1 NC_013223.1 KEGG: dma:DMR_31270 protein methyltransferase HemK; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small; protein-(glutamine-N5) methyltransferase 2373298 8419932 Dret_2082 Desulfohalobium retbaense DSM 5692 protein-(glutamine-N5) methyltransferase YP_003198944.1 2372396 R 485915 CDS YP_003198945.1 258406203 8419933 complement(2373307..2374377) 1 NC_013223.1 TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: dma:DMR_31280 peptide chain release factor 1; peptide chain release factor 1 2374377 8419933 Dret_2083 Desulfohalobium retbaense DSM 5692 peptide chain release factor 1 YP_003198945.1 2373307 R 485915 CDS YP_003198946.1 258406204 8419934 complement(2374470..2374694) 1 NC_013223.1 TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: dvm:DvMF_1442 50S ribosomal protein L31; 50S ribosomal protein L31 2374694 8419934 Dret_2084 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L31 YP_003198946.1 2374470 R 485915 CDS YP_003198947.1 258406205 8419935 complement(2374873..2375526) 1 NC_013223.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 2375526 8419935 Dret_2085 Desulfohalobium retbaense DSM 5692 redox-sensing transcriptional repressor Rex YP_003198947.1 2374873 R 485915 CDS YP_003198948.1 258406206 8419936 complement(2375606..2375926) 1 NC_013223.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: dvl:Dvul_2067 ATP synthase F0, C subunit; ATP synthase F0 subunit C 2375926 8419936 Dret_2086 Desulfohalobium retbaense DSM 5692 ATP synthase F0 subunit C YP_003198948.1 2375606 R 485915 CDS YP_003198949.1 258406207 8419937 complement(2375979..2376659) 1 NC_013223.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: dma:DMR_42160 ATP synthase subunit A; ATP synthase F0 subunit A 2376659 8419937 Dret_2087 Desulfohalobium retbaense DSM 5692 ATP synthase F0 subunit A YP_003198949.1 2375979 R 485915 CDS YP_003198950.1 258406208 8419938 complement(2376675..2377094) 1 NC_013223.1 PFAM: ATP synthase I; KEGG: dma:DMR_42150 hypothetical membrane protein; ATP synthase I 2377094 8419938 Dret_2088 Desulfohalobium retbaense DSM 5692 ATP synthase I YP_003198950.1 2376675 R 485915 CDS YP_003198951.1 258406209 8419939 complement(2377066..2377371) 1 NC_013223.1 KEGG: dvl:Dvul_2064 ATP synthase protein I; ATP synthase protein I 2377371 8419939 Dret_2089 Desulfohalobium retbaense DSM 5692 ATP synthase protein I YP_003198951.1 2377066 R 485915 CDS YP_003198952.1 258406210 8419940 2377642..2378418 1 NC_013223.1 KEGG: dma:DMR_45820 hypothetical protein; hypothetical protein 2378418 8419940 Dret_2090 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198952.1 2377642 D 485915 CDS YP_003198953.1 258406211 8419941 2378492..2378995 1 NC_013223.1 KEGG: pca:Pcar_1039 LysM domain-containing protein; hypothetical protein 2378995 8419941 Dret_2091 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198953.1 2378492 D 485915 CDS YP_003198954.1 258406212 8419942 2379470..2381332 1 NC_013223.1 PFAM: pyruvate carboxyltransferase; KEGG: dde:Dde_0520 HMGL-like domain-containing protein; pyruvate carboxyltransferase 2381332 8419942 Dret_2092 Desulfohalobium retbaense DSM 5692 pyruvate carboxyltransferase YP_003198954.1 2379470 D 485915 CDS YP_003198955.1 258406213 8419943 complement(2381509..2382336) 1 NC_013223.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dal:Dalk_1983 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 2382336 8419943 Dret_2093 Desulfohalobium retbaense DSM 5692 UBA/THIF-type NAD/FAD binding protein YP_003198955.1 2381509 R 485915 CDS YP_003198956.1 258406214 8419944 complement(2382411..2383928) 1 NC_013223.1 TIGRFAM: glycerol kinase; PFAM: Carbohydrate kinase, FGGY-like; KEGG: dat:HRM2_18340 GlpK; glycerol kinase 2383928 8419944 Dret_2094 Desulfohalobium retbaense DSM 5692 glycerol kinase YP_003198956.1 2382411 R 485915 CDS YP_003198957.1 258406215 8419945 complement(2384042..2385751) 1 NC_013223.1 KEGG: hch:HCH_06973 ABC-type sugar transport system, periplasmic component; sugar ABC transporter substrate-binding protein 2385751 8419945 Dret_2095 Desulfohalobium retbaense DSM 5692 sugar ABC transporter substrate-binding protein YP_003198957.1 2384042 R 485915 CDS YP_003198958.1 258406216 8419946 complement(2385979..2386278) 1 NC_013223.1 PFAM: Protein of unknown function DUF2160, transmembrane; KEGG: csa:Csal_2090 hypothetical protein; hypothetical protein 2386278 8419946 Dret_2096 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198958.1 2385979 R 485915 CDS YP_003198959.1 258406217 8419947 complement(2386282..2387079) 1 NC_013223.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3980 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2387079 8419947 Dret_2097 Desulfohalobium retbaense DSM 5692 binding-protein-dependent transport system inner membrane protein YP_003198959.1 2386282 R 485915 CDS YP_003198960.1 258406218 8419948 complement(2387076..2387945) 1 NC_013223.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pin:Ping_3172 ABC sugar (glycerol) transporter binding protein inner membrane protein; binding-protein-dependent transport system inner membrane protein 2387945 8419948 Dret_2098 Desulfohalobium retbaense DSM 5692 binding-protein-dependent transport system inner membrane protein YP_003198960.1 2387076 R 485915 CDS YP_003198961.1 258406219 8419949 complement(2388072..2389169) 1 NC_013223.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mmw:Mmwyl1_0379 ABC transporter related; ABC transporter 2389169 8419949 Dret_2099 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003198961.1 2388072 R 485915 CDS YP_003198962.1 258406220 8419950 complement(2389175..2390305) 1 NC_013223.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rpe:RPE_1379 ABC transporter related; ABC transporter 2390305 8419950 Dret_2100 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003198962.1 2389175 R 485915 CDS YP_003198963.1 258406221 8419951 complement(2390654..2391928) 1 NC_013223.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 2391928 8419951 Dret_2101 Desulfohalobium retbaense DSM 5692 anaerobic glycerol-3-phosphate dehydrogenase subunit B YP_003198963.1 2390654 R 485915 CDS YP_003198964.1 258406222 8419952 complement(2391925..2393463) 1 NC_013223.1 TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dat:HRM2_42310 GlpA3; glycerol-3-phosphate dehydrogenase 2393463 8419952 Dret_2102 Desulfohalobium retbaense DSM 5692 glycerol-3-phosphate dehydrogenase YP_003198964.1 2391925 R 485915 CDS YP_003198965.1 258406223 8419953 complement(2393564..2394223) 1 NC_013223.1 KEGG: dma:DMR_30760 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 2394223 8419953 Dret_2103 Desulfohalobium retbaense DSM 5692 thiamine-phosphate pyrophosphorylase YP_003198965.1 2393564 R 485915 CDS YP_003198966.1 258406224 8419954 complement(2394220..2395026) 1 NC_013223.1 KEGG: dvm:DvMF_3006 hydroxyethylthiazole kinase; TIGRFAM: hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase; hydroxyethylthiazole kinase 2395026 8419954 Dret_2104 Desulfohalobium retbaense DSM 5692 hydroxyethylthiazole kinase YP_003198966.1 2394220 R 485915 CDS YP_003198967.1 258406225 8419955 2395353..2396270 1 NC_013223.1 PFAM: conserved hypothetical protein; KEGG: pca:Pcar_0641 hypothetical protein; hypothetical protein 2396270 8419955 Dret_2105 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198967.1 2395353 D 485915 CDS YP_003198968.1 258406226 8419956 complement(2396533..2396976) 1 NC_013223.1 PFAM: protein of unknown function DUF606; KEGG: dvm:DvMF_2381 protein of unknown function DUF606; hypothetical protein 2396976 8419956 Dret_2106 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198968.1 2396533 R 485915 CDS YP_003198969.1 258406227 8419957 2397178..2398047 1 NC_013223.1 PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: dvl:Dvul_0536 hypothetical protein; hypothetical protein 2398047 8419957 Dret_2107 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198969.1 2397178 D 485915 CDS YP_003198970.1 258406228 8419958 2398057..2398875 1 NC_013223.1 PFAM: protein of unknown function DUF62; KEGG: dvm:DvMF_1391 protein of unknown function DUF62; hypothetical protein 2398875 8419958 Dret_2108 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198970.1 2398057 D 485915 CDS YP_003198971.1 258406229 8419959 complement(2398886..2399302) 1 NC_013223.1 PFAM: protein of unknown function UPF0047; KEGG: dde:Dde_3072 hypothetical protein; hypothetical protein 2399302 8419959 Dret_2109 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198971.1 2398886 R 485915 CDS YP_003198972.1 258406230 8419960 complement(2399334..2401283) 1 NC_013223.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: dvl:Dvul_0382 molybdenum cofactor synthesis domain-containing protein; LysR family transcriptional regulator 2401283 8419960 Dret_2110 Desulfohalobium retbaense DSM 5692 LysR family transcriptional regulator YP_003198972.1 2399334 R 485915 CDS YP_003198973.1 258406231 8419961 2401518..2402282 1 NC_013223.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2402282 truA 8419961 truA Desulfohalobium retbaense DSM 5692 tRNA pseudouridine synthase A YP_003198973.1 2401518 D 485915 CDS YP_003198974.1 258406232 8419962 complement(2402248..2403525) 1 NC_013223.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: dde:Dde_3064 ribonuclease BN, putative; ribonuclease BN 2403525 8419962 Dret_2112 Desulfohalobium retbaense DSM 5692 ribonuclease BN YP_003198974.1 2402248 R 485915 CDS YP_003198975.1 258406233 8419963 2403693..2404442 1 NC_013223.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; KEGG: esa:ESA_01859 hypothetical protein; short-chain dehydrogenase/reductase SDR 2404442 8419963 Dret_2113 Desulfohalobium retbaense DSM 5692 short-chain dehydrogenase/reductase SDR YP_003198975.1 2403693 D 485915 CDS YP_003198976.1 258406234 8419964 2404468..2405781 1 NC_013223.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 2405781 8419964 Dret_2114 Desulfohalobium retbaense DSM 5692 diphosphate--fructose-6-phosphate 1-phosphotransferase YP_003198976.1 2404468 D 485915 CDS YP_003198977.1 258406235 8419965 complement(2405994..2406434) 1 NC_013223.1 hypothetical protein 2406434 8419965 Dret_2115 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198977.1 2405994 R 485915 CDS YP_003198978.1 258406236 8419966 complement(2406624..2407157) 1 NC_013223.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: xac:XAC3515 cellulose synthase subunit C; hypothetical protein 2407157 8419966 Dret_2116 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198978.1 2406624 R 485915 CDS YP_003198979.1 258406237 8419967 2407308..2408483 1 NC_013223.1 PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1647 major facilitator superfamily protein; major facilitator superfamily protein 2408483 8419967 Dret_2117 Desulfohalobium retbaense DSM 5692 major facilitator superfamily protein YP_003198979.1 2407308 D 485915 CDS YP_003198980.1 258406238 8419968 2408742..2409716 1 NC_013223.1 PFAM: protein of unknown function DUF81; KEGG: dvl:Dvul_0412 hypothetical protein; hypothetical protein 2409716 8419968 Dret_2118 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198980.1 2408742 D 485915 CDS YP_003198981.1 258406239 8419969 2409733..2410155 1 NC_013223.1 KEGG: dvm:DvMF_1765 hypothetical protein; hypothetical protein 2410155 8419969 Dret_2119 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198981.1 2409733 D 485915 CDS YP_003198982.1 258406240 8419970 2410275..2411981 1 NC_013223.1 PFAM: Protein of unknown function DUF2064; aminoglycoside phosphotransferase; KEGG: dde:Dde_0214 hypothetical protein; hypothetical protein 2411981 8419970 Dret_2120 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198982.1 2410275 D 485915 CDS YP_003198983.1 258406241 8419971 2411966..2412916 1 NC_013223.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: dde:Dde_0213 ATPase; ABC transporter 2412916 8419971 Dret_2121 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003198983.1 2411966 D 485915 CDS YP_003198984.1 258406242 8419972 2412990..2414219 1 NC_013223.1 PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_0759 putative ABC transporter solute- binding protein; putative ABC transporter solute-binding protein 2414219 8419972 Dret_2122 Desulfohalobium retbaense DSM 5692 putative ABC transporter solute-binding protein YP_003198984.1 2412990 D 485915 CDS YP_003198985.1 258406243 8419973 2414222..2415085 1 NC_013223.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0308 ABC transporter, permease protein, putative; binding-protein-dependent transport system inner membrane protein 2415085 8419973 Dret_2123 Desulfohalobium retbaense DSM 5692 binding-protein-dependent transport system inner membrane protein YP_003198985.1 2414222 D 485915 CDS YP_003198986.1 258406244 8419974 2415089..2415904 1 NC_013223.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0309 ABC transporter, permease protein, putative; binding-protein-dependent transport system inner membrane protein 2415904 8419974 Dret_2124 Desulfohalobium retbaense DSM 5692 binding-protein-dependent transport system inner membrane protein YP_003198986.1 2415089 D 485915 CDS YP_003198987.1 258406245 8419975 2415986..2417419 1 NC_013223.1 PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: dde:Dde_0590 cardiolipin synthetase 2; phospholipase D/Transphosphatidylase 2417419 8419975 Dret_2125 Desulfohalobium retbaense DSM 5692 phospholipase D/Transphosphatidylase YP_003198987.1 2415986 D 485915 CDS YP_003198988.1 258406246 8419976 complement(2417557..2418207) 1 NC_013223.1 PFAM: protein of unknown function DUF1121; KEGG: sfu:Sfum_0236 protein of unknown function DUF1121; hypothetical protein 2418207 8419976 Dret_2126 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198988.1 2417557 R 485915 CDS YP_003198989.1 258406247 8419977 2418542..2420800 1 NC_013223.1 KEGG: hch:HCH_03963 hypothetical protein; hypothetical protein 2420800 8419977 Dret_2127 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198989.1 2418542 D 485915 CDS YP_003198990.1 258406248 8419978 2420797..2422104 1 NC_013223.1 PFAM: glycosyl transferase group 1; KEGG: sat:SYN_00036 glycosyltransferase; group 1 glycosyl transferase 2422104 8419978 Dret_2128 Desulfohalobium retbaense DSM 5692 group 1 glycosyl transferase YP_003198990.1 2420797 D 485915 CDS YP_003198991.1 258406249 8419979 2422107..2422784 1 NC_013223.1 KEGG: dol:Dole_2781 SNARE associated Golgi protein; hypothetical protein 2422784 8419979 Dret_2129 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198991.1 2422107 D 485915 CDS YP_003198992.1 258406250 8419980 2423072..2425831 1 NC_013223.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: dde:Dde_2486 excinuclease ABC subunit A; excinuclease ABC subunit A 2425831 8419980 Dret_2130 Desulfohalobium retbaense DSM 5692 excinuclease ABC subunit A YP_003198992.1 2423072 D 485915 CDS YP_003198993.1 258406251 8419981 complement(2425979..2428693) 1 NC_013223.1 PFAM: CoA-binding domain protein; GCN5-related N- acetyltransferase; KEGG: dvm:DvMF_1776 GCN5-related N- acetyltransferase; CoA-binding domain-containing protein 2428693 8419981 Dret_2131 Desulfohalobium retbaense DSM 5692 CoA-binding domain-containing protein YP_003198993.1 2425979 R 485915 CDS YP_003198994.1 258406252 8419982 2429093..2431078 1 NC_013223.1 TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: dvl:Dvul_0401 acetate--CoA ligase; acetate/CoA ligase 2431078 8419982 Dret_2132 Desulfohalobium retbaense DSM 5692 acetate/CoA ligase YP_003198994.1 2429093 D 485915 CDS YP_003198995.1 258406253 8419983 complement(2431139..2431522) 1 NC_013223.1 KEGG: gsu:GSU1496 pilin domain-containing protein; hypothetical protein 2431522 8419983 Dret_2133 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198995.1 2431139 R 485915 CDS YP_003198996.1 258406254 8419984 2431800..2432507 1 NC_013223.1 PFAM: protein of unknown function UPF0005; KEGG: dvm:DvMF_0927 protein of unknown function UPF0005; hypothetical protein 2432507 8419984 Dret_2134 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003198996.1 2431800 D 485915 CDS YP_003198997.1 258406255 8419985 2432610..2433671 1 NC_013223.1 KEGG: dvm:DvMF_0926 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 2433671 8419985 Dret_2135 Desulfohalobium retbaense DSM 5692 tetraacyldisaccharide 4'-kinase YP_003198997.1 2432610 D 485915 CDS YP_003198998.1 258406256 8419986 2433784..2435928 1 NC_013223.1 KEGG: dma:DMR_37770 ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; SMART: Cold shock protein; ribonuclease R 2435928 8419986 Dret_2136 Desulfohalobium retbaense DSM 5692 ribonuclease R YP_003198998.1 2433784 D 485915 CDS YP_003198999.1 258406257 8419987 complement(2436109..2437494) 1 NC_013223.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 2437494 trmE 8419987 trmE Desulfohalobium retbaense DSM 5692 tRNA modification GTPase TrmE YP_003198999.1 2436109 R 485915 CDS YP_003199000.1 258406258 8419988 complement(2437847..2438527) 1 NC_013223.1 PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: dma:DMR_14810 hypothetical protein; single-stranded nucleic acid binding R3H domain-containing protein 2438527 8419988 Dret_2138 Desulfohalobium retbaense DSM 5692 single-stranded nucleic acid binding R3H domain-containing protein YP_003199000.1 2437847 R 485915 CDS YP_003199001.1 258406259 8419989 complement(2438552..2440204) 1 NC_013223.1 TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: 60 kDa inner membrane insertion protein; KEGG: dma:DMR_14800 inner membrane protein OxaA; YidC/Oxa1 family membrane protein insertase 2440204 8419989 Dret_2139 Desulfohalobium retbaense DSM 5692 YidC/Oxa1 family membrane protein insertase YP_003199001.1 2438552 R 485915 CDS YP_003199002.1 258406260 8419990 complement(2440216..2440455) 1 NC_013223.1 PFAM: protein of unknown function DUF37; KEGG: ank:AnaeK_4496 protein of unknown function DUF37; hypothetical protein 2440455 8419990 Dret_2140 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199002.1 2440216 R 485915 CDS YP_003199003.1 258406261 8419991 complement(2440443..2440835) 1 NC_013223.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: dvm:DvMF_0890 ribonuclease P protein component; ribonuclease P protein component 2440835 8419991 Dret_2141 Desulfohalobium retbaense DSM 5692 ribonuclease P protein component YP_003199003.1 2440443 R 485915 CDS YP_003199004.1 258406262 8419992 complement(2440823..2440957) 1 NC_013223.1 TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: ngk:NGK_2661 50S ribosomal protein L34; 50S ribosomal protein L34 2440957 8419992 Dret_2142 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L34 YP_003199004.1 2440823 R 485915 CDS YP_003199005.1 258406263 8419993 2441135..2441743 1 NC_013223.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: dde:Dde_0373 phosphoesterase, PA-phosphatase related; PA-phosphatase like phosphoesterase 2441743 8419993 Dret_2143 Desulfohalobium retbaense DSM 5692 PA-phosphatase like phosphoesterase YP_003199005.1 2441135 D 485915 CDS YP_003199006.1 258406264 8419994 complement(2441698..2441970) 1 NC_013223.1 KEGG: pca:Pcar_1272 hypothetical protein; hypothetical protein 2441970 8419994 Dret_2144 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199006.1 2441698 R 485915 CDS YP_003199007.1 258406265 8419995 complement(2441954..2442703) 1 NC_013223.1 PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_1174 glycosyl transferase family protein; family 2 glycosyl transferase 2442703 8419995 Dret_2145 Desulfohalobium retbaense DSM 5692 family 2 glycosyl transferase YP_003199007.1 2441954 R 485915 CDS YP_003199008.1 258406266 8419997 2442868..2442960 1 NC_013223.1 hypothetical protein 2442960 8419997 Dret_2146 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199008.1 2442868 D 485915 CDS YP_003199009.1 258406267 8419998 2443171..2444334 1 NC_013223.1 PFAM: periplasmic binding protein; KEGG: dde:Dde_1622 iron transport periplasmic binding protein; periplasmic binding protein 2444334 8419998 Dret_2147 Desulfohalobium retbaense DSM 5692 periplasmic binding protein YP_003199009.1 2443171 D 485915 CDS YP_003199010.1 258406268 8419999 2444336..2445406 1 NC_013223.1 PFAM: transport system permease protein; KEGG: dde:Dde_1623 iron(III) dicitrate transport system permease protein; transport system permease 2445406 8419999 Dret_2148 Desulfohalobium retbaense DSM 5692 transport system permease YP_003199010.1 2444336 D 485915 CDS YP_003199011.1 258406269 8420000 2445403..2446161 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1624 ATPase; ABC transporter 2446161 8420000 Dret_2149 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003199011.1 2445403 D 485915 CDS YP_003199012.1 258406270 8420001 2446222..2446833 1 NC_013223.1 PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: dde:Dde_1625 formylmethanofuran dehydrogenase, subunit E; formylmethanofuran dehydrogenase subunit E 2446833 8420001 Dret_2150 Desulfohalobium retbaense DSM 5692 formylmethanofuran dehydrogenase subunit E YP_003199012.1 2446222 D 485915 CDS YP_003199013.1 258406271 8420002 2447203..2448420 1 NC_013223.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 2448420 8420002 Dret_2151 Desulfohalobium retbaense DSM 5692 acetylornithine aminotransferase YP_003199013.1 2447203 D 485915 CDS YP_003199014.1 258406272 8420003 2448609..2449337 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_0916 ABC transporter related; ABC transporter 2449337 8420003 Dret_2152 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003199014.1 2448609 D 485915 CDS YP_003199015.1 258406273 8420004 2449379..2450200 1 NC_013223.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dvm:DvMF_3152 extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 2450200 8420004 Dret_2153 Desulfohalobium retbaense DSM 5692 family 3 extracellular solute-binding protein YP_003199015.1 2449379 D 485915 CDS YP_003199016.1 258406274 8420005 2450348..2451049 1 NC_013223.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_3153 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 2451049 8420005 Dret_2154 Desulfohalobium retbaense DSM 5692 polar amino acid ABC transporter inner membrane subunit YP_003199016.1 2450348 D 485915 CDS YP_003199017.1 258406275 8420006 2451068..2451772 1 NC_013223.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_0919 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 2451772 8420006 Dret_2155 Desulfohalobium retbaense DSM 5692 polar amino acid ABC transporter inner membrane subunit YP_003199017.1 2451068 D 485915 CDS YP_003199018.1 258406276 8420007 2451762..2452652 1 NC_013223.1 PFAM: ribosomal L11 methyltransferase; methyltransferase small; KEGG: dds:Ddes_1004 ribosomal L11 methyltransferase; ribosomal L11 methyltransferase 2452652 8420007 Dret_2156 Desulfohalobium retbaense DSM 5692 ribosomal L11 methyltransferase YP_003199018.1 2451762 D 485915 CDS YP_003199019.1 258406277 8420008 2452755..2453411 1 NC_013223.1 PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; KEGG: dma:DMR_17660 putative DNA glycosylase; HhH-GPD family protein 2453411 8420008 Dret_2157 Desulfohalobium retbaense DSM 5692 HhH-GPD family protein YP_003199019.1 2452755 D 485915 CDS YP_003199020.1 258406278 8420009 2453417..2454565 1 NC_013223.1 PFAM: Peptidase M23; KEGG: dvl:Dvul_0922 peptidase M23B; peptidase M23 2454565 8420009 Dret_2158 Desulfohalobium retbaense DSM 5692 peptidase M23 YP_003199020.1 2453417 D 485915 CDS YP_003199021.1 258406279 8420010 2454927..2456195 1 NC_013223.1 KEGG: dds:Ddes_0896 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; carboxyl-terminal protease 2456195 8420010 Dret_2159 Desulfohalobium retbaense DSM 5692 carboxyl-terminal protease YP_003199021.1 2454927 D 485915 CDS YP_003199022.1 258406280 8420011 2456280..2457491 1 NC_013223.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: dvl:Dvul_0924 protein of unknown function DUF610, YibQ; hypothetical protein 2457491 8420011 Dret_2160 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199022.1 2456280 D 485915 CDS YP_003199023.1 258406281 8420012 2457518..2458492 1 NC_013223.1 PFAM: protein of unknown function DUF534; KEGG: dps:DP3100 hypothetical protein; hypothetical protein 2458492 8420012 Dret_2161 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199023.1 2457518 D 485915 CDS YP_003199024.1 258406282 8420013 2458701..2459588 1 NC_013223.1 PFAM: inner-membrane translocator; KEGG: dps:DP3101 hypothetical protein; inner-membrane translocator 2459588 8420013 Dret_2162 Desulfohalobium retbaense DSM 5692 inner-membrane translocator YP_003199024.1 2458701 D 485915 CDS YP_003199025.1 258406283 8420014 2459585..2460379 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP3102 ABC transporter, ATP-binding protein; ABC transporter 2460379 8420014 Dret_2163 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003199025.1 2459585 D 485915 CDS YP_003199026.1 258406284 8420015 2460515..2460934 1 NC_013223.1 KEGG: dvm:DvMF_3160 nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase; nucleoside-diphosphate kinase 2460934 8420015 Dret_2164 Desulfohalobium retbaense DSM 5692 nucleoside-diphosphate kinase YP_003199026.1 2460515 D 485915 CDS YP_003199027.1 258406285 8420016 2460931..2461740 1 NC_013223.1 KEGG: dde:Dde_1440 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 2461740 8420016 Dret_2165 Desulfohalobium retbaense DSM 5692 pyrroline-5-carboxylate reductase YP_003199027.1 2460931 D 485915 CDS YP_003199028.1 258406286 8420017 complement(2462033..2462434) 1 NC_013223.1 PFAM: ROSMUCR transcriptional regulator; KEGG: dma:DMR_34370 hypothetical protein; MucR family transcriptional regulator 2462434 8420017 Dret_2166 Desulfohalobium retbaense DSM 5692 MucR family transcriptional regulator YP_003199028.1 2462033 R 485915 CDS YP_003199029.1 258406287 8420018 complement(2462599..2464041) 1 NC_013223.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 2464041 aspA 8420018 aspA Desulfohalobium retbaense DSM 5692 aspartate ammonia-lyase YP_003199029.1 2462599 R 485915 CDS YP_003199030.1 258406288 8420019 complement(2464099..2464560) 1 NC_013223.1 TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: dvl:Dvul_0913 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 2464560 8420019 Dret_2168 Desulfohalobium retbaense DSM 5692 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YP_003199030.1 2464099 R 485915 CDS YP_003199031.1 258406289 8420020 2465043..2467619 1 NC_013223.1 KEGG: dma:DMR_45660 putative glycogen phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; alpha-glucan phosphorylase 2467619 8420020 Dret_2169 Desulfohalobium retbaense DSM 5692 alpha-glucan phosphorylase YP_003199031.1 2465043 D 485915 CDS YP_003199032.1 258406290 8420021 2467623..2468231 1 NC_013223.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_1484 tRNA (guanosine-2'-O-)- methyltransferase; tRNA guanosine-2'-O-methyltransferase 2468231 8420021 Dret_2170 Desulfohalobium retbaense DSM 5692 tRNA guanosine-2'-O-methyltransferase YP_003199032.1 2467623 D 485915 CDS YP_003199033.1 258406291 8420022 2468271..2469350 1 NC_013223.1 KEGG: dvm:DvMF_1408 chorismate synthase; TIGRFAM: chorismate synthase; PFAM: chorismate synthase; chorismate synthase 2469350 8420022 Dret_2171 Desulfohalobium retbaense DSM 5692 chorismate synthase YP_003199033.1 2468271 D 485915 CDS YP_003199034.1 258406292 8420023 complement(2469594..2469989) 1 NC_013223.1 PFAM: regulatory protein LysR; KEGG: dma:DMR_43980 ModE family transcriptional regulator; putative ModE family transcriptional regulator 2469989 8420023 Dret_2172 Desulfohalobium retbaense DSM 5692 putative ModE family transcriptional regulator YP_003199034.1 2469594 R 485915 CDS YP_003199035.1 258406293 8420024 2470312..2471757 1 NC_013223.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2651 MATE efflux family protein; MATE efflux family protein 2471757 8420024 Dret_2173 Desulfohalobium retbaense DSM 5692 MATE efflux family protein YP_003199035.1 2470312 D 485915 CDS YP_003199036.1 258406294 8420025 2471714..2472625 1 NC_013223.1 PFAM: Uncharacterised conserved protein UCP018688; KEGG: dma:DMR_43960 hypothetical protein; hypothetical protein 2472625 8420025 Dret_2174 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199036.1 2471714 D 485915 CDS YP_003199037.1 258406295 8420026 2472818..2473108 1 NC_013223.1 PFAM: chaperonin Cpn10; KEGG: dvl:Dvul_1195 chaperonin Cpn10; chaperonin Cpn10 2473108 8420026 Dret_2175 Desulfohalobium retbaense DSM 5692 chaperonin Cpn10 YP_003199037.1 2472818 D 485915 CDS YP_003199038.1 258406296 8420027 2473141..2474790 1 NC_013223.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 2474790 groEL 8420027 groEL Desulfohalobium retbaense DSM 5692 chaperonin GroEL YP_003199038.1 2473141 D 485915 CDS YP_003199039.1 258406297 8420028 2474990..2475838 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_1740 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin 2475838 8420028 Dret_2177 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003199039.1 2474990 D 485915 CDS YP_003199040.1 258406298 8420029 complement(2475918..2476925) 1 NC_013223.1 KEGG: dde:Dde_3077 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 2476925 8420029 Dret_2178 Desulfohalobium retbaense DSM 5692 metal dependent phosphohydrolase YP_003199040.1 2475918 R 485915 CDS YP_003199041.1 258406299 8420035 complement(2482956..2484092) 1 NC_013223.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 2484092 8420035 Dret_2179 Desulfohalobium retbaense DSM 5692 gamma-glutamyl kinase YP_003199041.1 2482956 R 485915 CDS YP_003199042.1 258406300 8420036 complement(2484079..2485131) 1 NC_013223.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 2485131 obgE 8420036 obgE Desulfohalobium retbaense DSM 5692 GTPase ObgE YP_003199042.1 2484079 R 485915 CDS YP_003199043.1 258406301 8420037 complement(2485239..2485505) 1 NC_013223.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 2485505 rpmA 8420037 rpmA Desulfohalobium retbaense DSM 5692 50S ribosomal protein L27 YP_003199043.1 2485239 R 485915 CDS YP_003199044.1 258406302 8420038 complement(2485521..2485832) 1 NC_013223.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: dvl:Dvul_2058 50S ribosomal protein L21; 50S ribosomal protein L21 2485832 8420038 Dret_2182 Desulfohalobium retbaense DSM 5692 50S ribosomal protein L21 YP_003199044.1 2485521 R 485915 CDS YP_003199045.1 258406303 8420039 complement(2486011..2486781) 1 NC_013223.1 KEGG: dma:DMR_11140 competence protein F; competence protein F 2486781 8420039 Dret_2183 Desulfohalobium retbaense DSM 5692 competence protein F YP_003199045.1 2486011 R 485915 CDS YP_003199046.1 258406304 8420040 complement(2486741..2487346) 1 NC_013223.1 KEGG: dvu:DVU2767 iron-sulfur flavoprotein, putative; iron-sulfur flavoprotein 2487346 8420040 Dret_2184 Desulfohalobium retbaense DSM 5692 iron-sulfur flavoprotein YP_003199046.1 2486741 R 485915 CDS YP_003199047.1 258406305 8420041 complement(2487354..2487476) 1 NC_013223.1 hypothetical protein 2487476 8420041 Dret_2185 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199047.1 2487354 R 485915 CDS YP_003199048.1 258406306 8420042 complement(2487721..2488353) 1 NC_013223.1 PFAM: beta-lactamase domain protein; KEGG: dde:Dde_0786 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 2488353 8420042 Dret_2186 Desulfohalobium retbaense DSM 5692 beta-lactamase domain-containing protein YP_003199048.1 2487721 R 485915 CDS YP_003199049.1 258406307 8420043 complement(2488353..2488874) 1 NC_013223.1 PFAM: nitroreductase; KEGG: dvl:Dvul_0545 nitroreductase; nitroreductase 2488874 8420043 Dret_2187 Desulfohalobium retbaense DSM 5692 nitroreductase YP_003199049.1 2488353 R 485915 CDS YP_003199050.1 258406308 8420044 2489165..2491570 1 NC_013223.1 KEGG: dma:DMR_11170 GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat- containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: GGDEF domain containing protein; Tetratricopeptide repeat; diguanylate cyclase and serine/threonine protein kinase with TPR repeats 2491570 8420044 Dret_2188 Desulfohalobium retbaense DSM 5692 diguanylate cyclase and serine/threonine protein kinase with TPR repeats YP_003199050.1 2489165 D 485915 CDS YP_003199051.1 258406309 8420045 2491631..2491765 1 NC_013223.1 hypothetical protein 2491765 8420045 Dret_2189 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199051.1 2491631 D 485915 CDS YP_003199052.1 258406310 8420046 complement(2491746..2494385) 1 NC_013223.1 PFAM: peptidase M16 domain protein; KEGG: dde:Dde_1699 M16 family peptidase; peptidase M16 domain-containing protein 2494385 8420046 Dret_2190 Desulfohalobium retbaense DSM 5692 peptidase M16 domain-containing protein YP_003199052.1 2491746 R 485915 CDS YP_003199053.1 258406311 8420047 complement(2494462..2494731) 1 NC_013223.1 KEGG: dvm:DvMF_0238 hypothetical protein; hypothetical protein 2494731 8420047 Dret_2191 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199053.1 2494462 R 485915 CDS YP_003199054.1 258406312 8420048 complement(2494758..2497286) 1 NC_013223.1 PFAM: Protein of unknown function DUF2344; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvu:DVU1432 radical SAM domain-containing protein; hypothetical protein 2497286 8420048 Dret_2192 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199054.1 2494758 R 485915 CDS YP_003199055.1 258406313 8420049 complement(2497359..2497721) 1 NC_013223.1 KEGG: dma:DMR_26780 hypothetical protein; hypothetical protein 2497721 8420049 Dret_2193 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199055.1 2497359 R 485915 CDS YP_003199056.1 258406314 8420050 2497818..2498378 1 NC_013223.1 PFAM: Colicin V production protein; KEGG: dat:HRM2_35760 putative colicin V production protein-like protein; colicin V production protein 2498378 8420050 Dret_2194 Desulfohalobium retbaense DSM 5692 colicin V production protein YP_003199056.1 2497818 D 485915 CDS YP_003199057.1 258406315 8420051 2498385..2499197 1 NC_013223.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 2499197 mazG 8420051 mazG Desulfohalobium retbaense DSM 5692 nucleoside triphosphate pyrophosphohydrolase YP_003199057.1 2498385 D 485915 CDS YP_003199058.1 258406316 8420052 complement(2499288..2499989) 1 NC_013223.1 TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: dde:Dde_1452 cytidylate kinase; cytidylate kinase 2499989 8420052 Dret_2196 Desulfohalobium retbaense DSM 5692 cytidylate kinase YP_003199058.1 2499288 R 485915 CDS YP_003199059.1 258406317 8420053 complement(2499979..2501079) 1 NC_013223.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: dma:DMR_39240 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 2501079 8420053 Dret_2197 Desulfohalobium retbaense DSM 5692 histidinol-phosphate aminotransferase YP_003199059.1 2499979 R 485915 CDS YP_003199060.1 258406318 8420054 complement(2501445..2501723) 1 NC_013223.1 hypothetical protein 2501723 8420054 Dret_2198 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199060.1 2501445 R 485915 CDS YP_003199061.1 258406319 8420055 complement(2501727..2503886) 1 NC_013223.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; Secretin/TonB short domain; NolW domain protein; KEGG: aeh:Mlg_2759 type IV pilus secretin PilQ; type IV pilus secretin PilQ 2503886 8420055 Dret_2199 Desulfohalobium retbaense DSM 5692 type IV pilus secretin PilQ YP_003199061.1 2501727 R 485915 CDS YP_003199062.1 258406320 8420056 complement(2503873..2504415) 1 NC_013223.1 KEGG: dat:HRM2_11020 PilP; PilP protein 2504415 8420056 Dret_2200 Desulfohalobium retbaense DSM 5692 PilP protein YP_003199062.1 2503873 R 485915 CDS YP_003199063.1 258406321 8420057 complement(2504470..2505087) 1 NC_013223.1 KEGG: dat:HRM2_11010 PilO; Tfp pilus assembly protein PilO-like protein 2505087 8420057 Dret_2201 Desulfohalobium retbaense DSM 5692 Tfp pilus assembly protein PilO-like protein YP_003199063.1 2504470 R 485915 CDS YP_003199064.1 258406322 8420058 complement(2505080..2505655) 1 NC_013223.1 PFAM: Fimbrial assembly family protein; KEGG: dps:DP0109 fimbrial assembly protein PilN; fimbrial assembly family protein 2505655 8420058 Dret_2202 Desulfohalobium retbaense DSM 5692 fimbrial assembly family protein YP_003199064.1 2505080 R 485915 CDS YP_003199065.1 258406323 8420059 complement(2505665..2506642) 1 NC_013223.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: glo:Glov_1640 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 2506642 8420059 Dret_2203 Desulfohalobium retbaense DSM 5692 type IV pilus assembly protein PilM YP_003199065.1 2505665 R 485915 CDS YP_003199066.1 258406324 8420060 complement(2506797..2507249) 1 NC_013223.1 PFAM: UspA domain protein; KEGG: dvm:DvMF_0906 UspA domain protein; UspA domain-containing protein 2507249 8420060 Dret_2204 Desulfohalobium retbaense DSM 5692 UspA domain-containing protein YP_003199066.1 2506797 R 485915 CDS YP_003199067.1 258406325 8420061 complement(2507474..2508358) 1 NC_013223.1 TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: dma:DMR_04930 4-hydroxybenzoate octaprenyltransferase; 4-hydroxybenzoate polyprenyltransferase 2508358 8420061 Dret_2205 Desulfohalobium retbaense DSM 5692 4-hydroxybenzoate polyprenyltransferase YP_003199067.1 2507474 R 485915 CDS YP_003199068.1 258406326 8420062 complement(2508355..2509554) 1 NC_013223.1 KEGG: dde:Dde_0228 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA- binding S4 domain protein; tyrosyl-tRNA synthetase 2509554 8420062 Dret_2206 Desulfohalobium retbaense DSM 5692 tyrosyl-tRNA synthetase YP_003199068.1 2508355 R 485915 CDS YP_003199069.1 258406327 8420063 complement(2509595..2511151) 1 NC_013223.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 2511151 8420063 Dret_2207 Desulfohalobium retbaense DSM 5692 phosphodiesterase YP_003199069.1 2509595 R 485915 CDS YP_003199070.1 258406328 8420065 complement(2511567..2511836) 1 NC_013223.1 KEGG: dma:DMR_04860 hypothetical protein; hypothetical protein 2511836 8420065 Dret_2208 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199070.1 2511567 R 485915 CDS YP_003199071.1 258406329 8420066 complement(2511840..2512028) 1 NC_013223.1 KEGG: dma:DMR_04850 hypothetical protein; hypothetical protein 2512028 8420066 Dret_2209 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199071.1 2511840 R 485915 CDS YP_003199072.1 258406330 8420067 complement(2512015..2513424) 1 NC_013223.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 2513424 glmU 8420067 glmU Desulfohalobium retbaense DSM 5692 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_003199072.1 2512015 R 485915 CDS YP_003199073.1 258406331 8420068 complement(2513672..2514088) 1 NC_013223.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit epsilon 2514088 atpC 8420068 atpC Desulfohalobium retbaense DSM 5692 F0F1 ATP synthase subunit epsilon YP_003199073.1 2513672 R 485915 CDS YP_003199074.1 258406332 8420069 complement(2514112..2515518) 1 NC_013223.1 KEGG: dvl:Dvul_2195 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; ATP synthase F1 subunit beta 2515518 8420069 Dret_2212 Desulfohalobium retbaense DSM 5692 ATP synthase F1 subunit beta YP_003199074.1 2514112 R 485915 CDS YP_003199075.1 258406333 8420070 complement(2515539..2516408) 1 NC_013223.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 2516408 8420070 Dret_2213 Desulfohalobium retbaense DSM 5692 F0F1 ATP synthase subunit gamma YP_003199075.1 2515539 R 485915 CDS YP_003199076.1 258406334 8420071 complement(2516420..2517934) 1 NC_013223.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 2517934 8420071 Dret_2214 Desulfohalobium retbaense DSM 5692 F0F1 ATP synthase subunit alpha YP_003199076.1 2516420 R 485915 CDS YP_003199077.1 258406335 8420072 complement(2517940..2518479) 1 NC_013223.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 2518479 8420072 Dret_2215 Desulfohalobium retbaense DSM 5692 F0F1 ATP synthase subunit delta YP_003199077.1 2517940 R 485915 CDS YP_003199078.1 258406336 8420073 complement(2518488..2519066) 1 NC_013223.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dvm:DvMF_2827 H+transporting two-sector ATPase B/B' subunit; ATP synthase F0 subunit B 2519066 8420073 Dret_2216 Desulfohalobium retbaense DSM 5692 ATP synthase F0 subunit B YP_003199078.1 2518488 R 485915 CDS YP_003199079.1 258406337 8420074 complement(2519093..2519515) 1 NC_013223.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dvm:DvMF_2826 H+transporting two-sector ATPase B/B' subunit; H+transporting two-sector ATPase subunit B/B' 2519515 8420074 Dret_2217 Desulfohalobium retbaense DSM 5692 H+transporting two-sector ATPase subunit B/B' YP_003199079.1 2519093 R 485915 CDS YP_003199080.1 258406338 8420075 complement(2520079..2521200) 1 NC_013223.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: dde:Dde_0992 rod shape-determining protein RodA; rod shape-determining protein RodA 2521200 8420075 Dret_2218 Desulfohalobium retbaense DSM 5692 rod shape-determining protein RodA YP_003199080.1 2520079 R 485915 CDS YP_003199081.1 258406339 8420076 complement(2521187..2522989) 1 NC_013223.1 KEGG: dde:Dde_0993 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 2522989 8420076 Dret_2219 Desulfohalobium retbaense DSM 5692 penicillin-binding protein 2 YP_003199081.1 2521187 R 485915 CDS YP_003199082.1 258406340 8420077 complement(2522982..2523440) 1 NC_013223.1 KEGG: dvl:Dvul_2186 hypothetical protein; hypothetical protein 2523440 8420077 Dret_2220 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199082.1 2522982 R 485915 CDS YP_003199083.1 258406341 8420078 complement(2523446..2524297) 1 NC_013223.1 TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: dde:Dde_0995 rod shape-determining protein MreC; rod shape-determining protein MreC 2524297 8420078 Dret_2221 Desulfohalobium retbaense DSM 5692 rod shape-determining protein MreC YP_003199083.1 2523446 R 485915 CDS YP_003199084.1 258406342 8420079 complement(2524323..2525363) 1 NC_013223.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 2525363 8420079 Dret_2222 Desulfohalobium retbaense DSM 5692 rod shape-determining protein MreB YP_003199084.1 2524323 R 485915 CDS YP_003199085.1 258406343 8420080 2525480..2526469 1 NC_013223.1 KEGG: dvm:DvMF_2819 conserved hypothetical radical SAM protein; TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein 2526469 8420080 Dret_2223 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199085.1 2525480 D 485915 CDS YP_003199086.1 258406344 8420081 2526462..2526947 1 NC_013223.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: dma:DMR_04660 putative methylated-DNA-- protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 2526947 8420081 Dret_2224 Desulfohalobium retbaense DSM 5692 methylated-DNA--protein-cysteine methyltransferase YP_003199086.1 2526462 D 485915 CDS YP_003199087.1 258406345 8420082 2526944..2528542 1 NC_013223.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: pag:PLES_35201 putative ATP-binding component of ABC transporter; ABC transporter 2528542 8420082 Dret_2225 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003199087.1 2526944 D 485915 CDS YP_003199088.1 258406346 8420083 complement(2528667..2529503) 1 NC_013223.1 PFAM: protein of unknown function DUF1009; KEGG: dvm:DvMF_3002 protein of unknown function DUF1009; hypothetical protein 2529503 8420083 Dret_2226 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199088.1 2528667 R 485915 CDS YP_003199089.1 258406347 8420084 complement(2529615..2530415) 1 NC_013223.1 TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N- acetylglu cosamineO-acyltransferase; KEGG: dvm:DvMF_3001 UDP-N-acetylglucosamine acyltransferase; acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase 2530415 8420084 Dret_2227 Desulfohalobium retbaense DSM 5692 acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase YP_003199089.1 2529615 R 485915 CDS YP_003199090.1 258406348 8420085 complement(2530418..2530876) 1 NC_013223.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: dde:Dde_1373 (3R)-hydroxymyristoyl-ACP dehydratase; 3-hydroxyacyl-ACP dehydratase 2530876 8420085 Dret_2228 Desulfohalobium retbaense DSM 5692 3-hydroxyacyl-ACP dehydratase YP_003199090.1 2530418 R 485915 CDS YP_003199091.1 258406349 8420086 complement(2530869..2531909) 1 NC_013223.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase LpxD; transferase hexapeptide repeat containing protein; KEGG: dde:Dde_1372 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase 2531909 8420086 Dret_2229 Desulfohalobium retbaense DSM 5692 UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase YP_003199091.1 2530869 R 485915 CDS YP_003199092.1 258406350 8420087 complement(2531924..2532463) 1 NC_013223.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: gme:Gmet_2356 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 2532463 8420087 Dret_2230 Desulfohalobium retbaense DSM 5692 outer membrane chaperone Skp YP_003199092.1 2531924 R 485915 CDS YP_003199093.1 258406351 8420088 complement(2532495..2535173) 1 NC_013223.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: dma:DMR_38540 hypothetical protein; outer membrane protein assembly complex, YaeT protein 2535173 8420088 Dret_2231 Desulfohalobium retbaense DSM 5692 outer membrane protein assembly complex, YaeT protein YP_003199093.1 2532495 R 485915 CDS YP_003199094.1 258406352 8420089 complement(2535320..2536009) 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dma:DMR_38530 lipoprotein releasing system ATP-binding protein LolD; ABC transporter 2536009 8420089 Dret_2232 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003199094.1 2535320 R 485915 CDS YP_003199095.1 258406353 8420090 complement(2536002..2537231) 1 NC_013223.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: dma:DMR_38520 lipoprotein releasing system transmembrane protein LolC; lipoprotein releasing system transmembrane protein LolC/E family 2537231 8420090 Dret_2233 Desulfohalobium retbaense DSM 5692 lipoprotein releasing system transmembrane protein LolC/E family YP_003199095.1 2536002 R 485915 CDS YP_003199096.1 258406354 8420091 complement(2537231..2538745) 1 NC_013223.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dde:Dde_1365 lysyl-tRNA synthetase; lysyl-tRNA synthetase 2538745 8420091 Dret_2234 Desulfohalobium retbaense DSM 5692 lysyl-tRNA synthetase YP_003199096.1 2537231 R 485915 CDS YP_003199097.1 258406355 8420093 2539261..2540010 1 NC_013223.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: dvl:Dvul_2537 rare lipoprotein A; rare lipoprotein A 2540010 8420093 Dret_2235 Desulfohalobium retbaense DSM 5692 rare lipoprotein A YP_003199097.1 2539261 D 485915 CDS YP_003199098.1 258406356 8420094 complement(2539994..2540290) 1 NC_013223.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: dde:Dde_0517 histone-like DNA-binding protein; histone family protein DNA-binding protein 2540290 8420094 Dret_2236 Desulfohalobium retbaense DSM 5692 histone family protein DNA-binding protein YP_003199098.1 2539994 R 485915 CDS YP_003199099.1 258406357 8420095 complement(2540302..2540718) 1 NC_013223.1 PFAM: histidine triad (HIT) protein; KEGG: dvl:Dvul_2539 histidine triad (HIT) protein; histidine triad (HIT) protein 2540718 8420095 Dret_2237 Desulfohalobium retbaense DSM 5692 histidine triad (HIT) protein YP_003199099.1 2540302 R 485915 CDS YP_003199100.1 258406358 8420096 2541243..2542307 1 NC_013223.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dma:DMR_02290 hypothetical protein; radical SAM protein 2542307 8420096 Dret_2238 Desulfohalobium retbaense DSM 5692 radical SAM protein YP_003199100.1 2541243 D 485915 CDS YP_003199101.1 258406359 8420097 2542621..2543799 1 NC_013223.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: dma:DMR_02310 amidohydrolase family protein; S-adenosylhomocysteine deaminase 2543799 8420097 Dret_2239 Desulfohalobium retbaense DSM 5692 S-adenosylhomocysteine deaminase YP_003199101.1 2542621 D 485915 CDS YP_003199102.1 258406360 8420098 2543858..2544790 1 NC_013223.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 2544790 pyrB 8420098 pyrB Desulfohalobium retbaense DSM 5692 aspartate carbamoyltransferase catalytic subunit YP_003199102.1 2543858 D 485915 CDS YP_003199103.1 258406361 8420099 2544792..2546096 1 NC_013223.1 TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: dvl:Dvul_0463 dihydroorotase, multifunctional complex type; dihydroorotase, multifunctional complex type 2546096 8420099 Dret_2241 Desulfohalobium retbaense DSM 5692 dihydroorotase, multifunctional complex type YP_003199103.1 2544792 D 485915 CDS YP_003199104.1 258406362 8420100 2546103..2547497 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: geo:Geob_3370 two component, sigma54 specific, transcriptional regulator, Fis family; two component, sigma54 specific, transcriptional regulator, Fis family 2547497 8420100 Dret_2242 Desulfohalobium retbaense DSM 5692 two component, sigma54 specific, transcriptional regulator, Fis family YP_003199104.1 2546103 D 485915 CDS YP_003199105.1 258406363 8420101 2547748..2548827 1 NC_013223.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2548827 8420101 Dret_2243 Desulfohalobium retbaense DSM 5692 ribosomal RNA large subunit methyltransferase N YP_003199105.1 2547748 D 485915 CDS YP_003199106.1 258406364 8420102 2548850..2549224 1 NC_013223.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 2549224 hisI 8420102 hisI Desulfohalobium retbaense DSM 5692 phosphoribosyl-AMP cyclohydrolase YP_003199106.1 2548850 D 485915 CDS YP_003199107.1 258406365 8420103 2549226..2550107 1 NC_013223.1 KEGG: dma:DMR_00640 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain; ATP phosphoribosyltransferase 2550107 8420103 Dret_2245 Desulfohalobium retbaense DSM 5692 ATP phosphoribosyltransferase YP_003199107.1 2549226 D 485915 CDS YP_003199108.1 258406366 8420104 2550453..2551211 1 NC_013223.1 PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: dat:HRM2_11040 TPR repeat domain protein; hypothetical protein 2551211 8420104 Dret_2246 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199108.1 2550453 D 485915 CDS YP_003199109.1 258406367 8420105 2551150..2552547 1 NC_013223.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dal:Dalk_2572 radical SAM domain protein; radical SAM protein 2552547 8420105 Dret_2247 Desulfohalobium retbaense DSM 5692 radical SAM protein YP_003199109.1 2551150 D 485915 CDS YP_003199110.1 258406368 8420106 2552762..2554573 1 NC_013223.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2554573 8420106 Dret_2248 Desulfohalobium retbaense DSM 5692 GTP-binding protein LepA YP_003199110.1 2552762 D 485915 CDS YP_003199111.1 258406369 8420107 2554682..2555281 1 NC_013223.1 KEGG: dma:DMR_39450 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24, S26A and S26B, conserved region; signal peptidase I 2555281 8420107 Dret_2249 Desulfohalobium retbaense DSM 5692 signal peptidase I YP_003199111.1 2554682 D 485915 CDS YP_003199112.1 258406370 8420108 2555334..2556869 1 NC_013223.1 KEGG: dma:DMR_39060 competence protein ComM; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 2556869 8420108 Dret_2250 Desulfohalobium retbaense DSM 5692 Mg chelatase subunit ChlI YP_003199112.1 2555334 D 485915 CDS YP_003199113.1 258406371 8420109 2556950..2558314 1 NC_013223.1 PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: dvm:DvMF_0011 serine dehydratase alpha chain; serine dehydratase subunit alpha 2558314 8420109 Dret_2251 Desulfohalobium retbaense DSM 5692 serine dehydratase subunit alpha YP_003199113.1 2556950 D 485915 CDS YP_003199114.1 258406372 8420110 complement(2558423..2559847) 1 NC_013223.1 KEGG: dma:DMR_05180 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase 2559847 8420110 Dret_2252 Desulfohalobium retbaense DSM 5692 pyruvate kinase YP_003199114.1 2558423 R 485915 CDS YP_003199115.1 258406373 8420111 complement(2560068..2560838) 1 NC_013223.1 PFAM: acyl-ACP thioesterase; KEGG: dvm:DvMF_1428 acyl-ACP thioesterase; acyl-ACP thioesterase 2560838 8420111 Dret_2253 Desulfohalobium retbaense DSM 5692 acyl-ACP thioesterase YP_003199115.1 2560068 R 485915 CDS YP_003199116.1 258406374 8420112 complement(2560950..2562644) 1 NC_013223.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: ppd:Ppro_1974 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2562644 8420112 Dret_2254 Desulfohalobium retbaense DSM 5692 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003199116.1 2560950 R 485915 CDS YP_003199117.1 258406375 8420113 complement(2563000..2564052) 1 NC_013223.1 PFAM: homocysteine S-methyltransferase; KEGG: pub:SAR11_1173 betaine-homocysteine methyltransferase; homocysteine S-methyltransferase 2564052 8420113 Dret_2255 Desulfohalobium retbaense DSM 5692 homocysteine S-methyltransferase YP_003199117.1 2563000 R 485915 CDS YP_003199118.1 258406376 8420114 complement(2564224..2565072) 1 NC_013223.1 KEGG: rfr:Rfer_1769 hypothetical protein; hypothetical protein 2565072 8420114 Dret_2256 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199118.1 2564224 R 485915 CDS YP_003199119.1 258406377 8420115 complement(2565094..2565630) 1 NC_013223.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: gbm:Gbem_3881 hydrogenase maturation protease; hydrogenase maturation protease 2565630 8420115 Dret_2257 Desulfohalobium retbaense DSM 5692 hydrogenase maturation protease YP_003199119.1 2565094 R 485915 CDS YP_003199120.1 258406378 8420116 complement(2565630..2567090) 1 NC_013223.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: afw:Anae109_4306 nickel-dependent hydrogenase large subunit; nickel-dependent hydrogenase large subunit 2567090 8420116 Dret_2258 Desulfohalobium retbaense DSM 5692 nickel-dependent hydrogenase large subunit YP_003199120.1 2565630 R 485915 CDS YP_003199121.1 258406379 8420117 complement(2567107..2568111) 1 NC_013223.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: afw:Anae109_4307 methyl-viologen-reducing hydrogenase delta subunit; NADH ubiquinone oxidoreductase 20 kDa subunit 2568111 8420117 Dret_2259 Desulfohalobium retbaense DSM 5692 NADH ubiquinone oxidoreductase 20 kDa subunit YP_003199121.1 2567107 R 485915 CDS YP_003199122.1 258406380 8420118 complement(2568135..2570558) 1 NC_013223.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; KEGG: dal:Dalk_1624 methyl-viologen-reducing hydrogenase delta subunit; methyl-viologen-reducing hydrogenase delta subunit 2570558 8420118 Dret_2260 Desulfohalobium retbaense DSM 5692 methyl-viologen-reducing hydrogenase delta subunit YP_003199122.1 2568135 R 485915 CDS YP_003199123.1 258406381 8420119 complement(2570686..2572662) 1 NC_013223.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: wsu:WS1121 heavy metal-transporting ATPase; heavy metal translocating P-type ATPase 2572662 8420119 Dret_2261 Desulfohalobium retbaense DSM 5692 heavy metal translocating P-type ATPase YP_003199123.1 2570686 R 485915 CDS YP_003199124.1 258406382 8420120 complement(2572846..2573205) 1 NC_013223.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: dde:Dde_0747 ArsR family transcriptional regulator; ArsR family transcriptional regulator 2573205 8420120 Dret_2262 Desulfohalobium retbaense DSM 5692 ArsR family transcriptional regulator YP_003199124.1 2572846 R 485915 CDS YP_003199125.1 258406383 8420121 complement(2573306..2574220) 1 NC_013223.1 PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: dol:Dole_0958 hypothetical protein; hypothetical protein 2574220 8420121 Dret_2263 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199125.1 2573306 R 485915 CDS YP_003199126.1 258406384 8420122 2574467..2575522 1 NC_013223.1 KEGG: pca:Pcar_2611 peptide methionine sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; Methionine sulfoxide reductase A; methionine-R-sulfoxide reductase 2575522 8420122 Dret_2264 Desulfohalobium retbaense DSM 5692 methionine-R-sulfoxide reductase YP_003199126.1 2574467 D 485915 CDS YP_003199127.1 258406385 8420123 complement(2575602..2576501) 1 NC_013223.1 PFAM: Peptidase M23; KEGG: dde:Dde_2203 M24/M37 family peptidase; peptidase M23 2576501 8420123 Dret_2265 Desulfohalobium retbaense DSM 5692 peptidase M23 YP_003199127.1 2575602 R 485915 CDS YP_003199128.1 258406386 8420124 complement(2576643..2577146) 1 NC_013223.1 PFAM: protein of unknown function UPF0066; KEGG: dde:Dde_2646 hypothetical protein; hypothetical protein 2577146 8420124 Dret_2266 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199128.1 2576643 R 485915 CDS YP_003199129.1 258406387 8420125 2577414..2578631 1 NC_013223.1 TIGRFAM: ammonium transporter; PFAM: ammonium transporter; KEGG: dma:DMR_34890 ammonium transporter; ammonium transporter 2578631 8420125 Dret_2267 Desulfohalobium retbaense DSM 5692 ammonium transporter YP_003199129.1 2577414 D 485915 CDS YP_003199130.1 258406388 8420126 2578686..2579024 1 NC_013223.1 PFAM: nitrogen regulatory protein P-II; KEGG: dvl:Dvul_1830 nitrogen regulatory protein P- II; nitrogen regulatory protein P-II 2579024 8420126 Dret_2268 Desulfohalobium retbaense DSM 5692 nitrogen regulatory protein P-II YP_003199130.1 2578686 D 485915 CDS YP_003199131.1 258406389 8420127 2579036..2581492 1 NC_013223.1 PFAM: GlnD PII-uridylyltransferase; amino acid- binding ACT domain protein; KEGG: dde:Dde_2309 metal dependent phosphohydrolase; (Protein-PII) uridylyltransferase 2581492 8420127 Dret_2269 Desulfohalobium retbaense DSM 5692 (Protein-PII) uridylyltransferase YP_003199131.1 2579036 D 485915 CDS YP_003199132.1 258406390 8420128 complement(2581560..2581871) 1 NC_013223.1 KEGG: dvm:DvMF_2817 hypothetical protein; hypothetical protein 2581871 8420128 Dret_2270 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199132.1 2581560 R 485915 CDS YP_003199133.1 258406391 8420129 complement(2582049..2582894) 1 NC_013223.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dol:Dole_2763 substrate-binding region of ABC- type glycine betaine transport system; glycine/betaine ABC transporter substrate-binding protein 2582894 8420129 Dret_2271 Desulfohalobium retbaense DSM 5692 glycine/betaine ABC transporter substrate-binding protein YP_003199133.1 2582049 R 485915 CDS YP_003199134.1 258406392 8420130 complement(2582973..2583812) 1 NC_013223.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dol:Dole_2764 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2583812 8420130 Dret_2272 Desulfohalobium retbaense DSM 5692 binding-protein-dependent transport system inner membrane protein YP_003199134.1 2582973 R 485915 CDS YP_003199135.1 258406393 8420131 complement(2583912..2585111) 1 NC_013223.1 KEGG: dol:Dole_2765 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 2585111 8420131 Dret_2273 Desulfohalobium retbaense DSM 5692 glycine betaine/L-proline ABC transporter ATPase YP_003199135.1 2583912 R 485915 CDS YP_003199136.1 258406394 8420132 2585655..2585843 1 NC_013223.1 hypothetical protein 2585843 8420132 Dret_2274 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199136.1 2585655 D 485915 CDS YP_003199137.1 258406395 8420133 2585846..2586046 1 NC_013223.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dma:DMR_08090 hypothetical protein; FmdB family regulatory protein 2586046 8420133 Dret_2275 Desulfohalobium retbaense DSM 5692 FmdB family regulatory protein YP_003199137.1 2585846 D 485915 CDS YP_003199138.1 258406396 8420134 complement(2586178..2586888) 1 NC_013223.1 PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_1271 glycosyl transferase family protein; family 2 glycosyl transferase 2586888 8420134 Dret_2276 Desulfohalobium retbaense DSM 5692 family 2 glycosyl transferase YP_003199138.1 2586178 R 485915 CDS YP_003199139.1 258406397 8420135 2587228..2587719 1 NC_013223.1 TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; KEGG: dde:Dde_3605 bifunctional ADP-heptose synthase; rfaE bifunctional protein 2587719 8420135 Dret_2277 Desulfohalobium retbaense DSM 5692 rfaE bifunctional protein YP_003199139.1 2587228 D 485915 CDS YP_003199140.1 258406398 8420136 2587716..2589515 1 NC_013223.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: gbm:Gbem_0904 type II secretion system protein E; type II secretion system protein E 2589515 8420136 Dret_2278 Desulfohalobium retbaense DSM 5692 type II secretion system protein E YP_003199140.1 2587716 D 485915 CDS YP_003199141.1 258406399 8420137 2589569..2590693 1 NC_013223.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: mxa:MXAN_2881 alcohol dehydrogenase, iron- containing; iron-containing alcohol dehydrogenase 2590693 8420137 Dret_2279 Desulfohalobium retbaense DSM 5692 iron-containing alcohol dehydrogenase YP_003199141.1 2589569 D 485915 CDS YP_003199142.1 258406400 8420138 2590779..2591606 1 NC_013223.1 KEGG: dat:HRM2_16410 UspA12; UspA protein 2591606 8420138 Dret_2280 Desulfohalobium retbaense DSM 5692 UspA protein YP_003199142.1 2590779 D 485915 CDS YP_003199143.1 258406401 8420139 complement(2591823..2592179) 1 NC_013223.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: sfu:Sfum_1903 putative regulatory protein, FmdB family; FmdB family regulatory protein 2592179 8420139 Dret_2281 Desulfohalobium retbaense DSM 5692 FmdB family regulatory protein YP_003199143.1 2591823 R 485915 CDS YP_003199144.1 258406402 8420140 2592657..2593259 1 NC_013223.1 PFAM: MGS domain protein; KEGG: dds:Ddes_0880 IMP cyclohydrolase; IMP cyclohydrolase 2593259 8420140 Dret_2282 Desulfohalobium retbaense DSM 5692 IMP cyclohydrolase YP_003199144.1 2592657 D 485915 CDS YP_003199145.1 258406403 8420141 2593269..2594918 1 NC_013223.1 TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: dvm:DvMF_1947 GTP-binding protein HflX; GTP-binding proten HflX 2594918 8420141 Dret_2283 Desulfohalobium retbaense DSM 5692 GTP-binding proten HflX YP_003199145.1 2593269 D 485915 CDS YP_003199146.1 258406404 8420142 complement(2595262..2595852) 1 NC_013223.1 PFAM: protein of unknown function DUF205; KEGG: dvm:DvMF_1944 protein of unknown function DUF205; hypothetical protein 2595852 8420142 Dret_2284 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199146.1 2595262 R 485915 CDS YP_003199147.1 258406405 8420143 complement(2595828..2597897) 1 NC_013223.1 PFAM: ribonuclease II; KEGG: dde:Dde_0173 RNB-like family protein; ribonuclease II 2597897 8420143 Dret_2285 Desulfohalobium retbaense DSM 5692 ribonuclease II YP_003199147.1 2595828 R 485915 CDS YP_003199148.1 258406406 8420144 complement(2597988..2599265) 1 NC_013223.1 KEGG: dde:Dde_0174 phosphoribosylaminoimidazolecarboxamide formyltransferase; PFAM: AICARFT/IMPCHase bienzyme formylation region; SMART: AICARFT/IMPCHase bienzyme formylation region; IMP cyclohydrolase 2599265 8420144 Dret_2286 Desulfohalobium retbaense DSM 5692 IMP cyclohydrolase YP_003199148.1 2597988 R 485915 CDS YP_003199149.1 258406407 8420145 2599424..2599756 1 NC_013223.1 KEGG: dvm:DvMF_1941 hypothetical protein; hypothetical protein 2599756 8420145 Dret_2287 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199149.1 2599424 D 485915 CDS YP_003199150.1 258406408 8420146 complement(2599670..2601118) 1 NC_013223.1 PFAM: Lytic transglycosylase catalytic; KEGG: dde:Dde_0175 transglycosylase SLT domain- containing protein; Lytic transglycosylase catalytic 2601118 8420146 Dret_2288 Desulfohalobium retbaense DSM 5692 Lytic transglycosylase catalytic YP_003199150.1 2599670 R 485915 CDS YP_003199151.1 258406409 8420147 2601220..2602500 1 NC_013223.1 KEGG: dvl:Dvul_0183 adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase; adenylosuccinate synthetase 2602500 8420147 Dret_2289 Desulfohalobium retbaense DSM 5692 adenylosuccinate synthetase YP_003199151.1 2601220 D 485915 CDS YP_003199152.1 258406410 8420148 2602595..2603455 1 NC_013223.1 KEGG: dde:Dde_0177 DNA polymerase III, delta prime subunit, putative; DNA polymerase III, delta prime subunit 2603455 8420148 Dret_2290 Desulfohalobium retbaense DSM 5692 DNA polymerase III, delta prime subunit YP_003199152.1 2602595 D 485915 CDS YP_003199153.1 258406411 8420149 complement(2603385..2604575) 1 NC_013223.1 PFAM: YibE/F family protein; KEGG: dde:Dde_1217 multitransmembrane protein-like; hypothetical protein 2604575 8420149 Dret_2291 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199153.1 2603385 R 485915 CDS YP_003199154.1 258406412 8420150 complement(2604653..2606116) 1 NC_013223.1 PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; KEGG: dde:Dde_1216 alkaline phosphatase; alkaline phosphatase 2606116 8420150 Dret_2292 Desulfohalobium retbaense DSM 5692 alkaline phosphatase YP_003199154.1 2604653 R 485915 CDS YP_003199155.1 258406413 8420151 2606371..2606718 1 NC_013223.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: dvm:DvMF_0008 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 2606718 8420151 Dret_2293 Desulfohalobium retbaense DSM 5692 TraR/DksA family transcriptional regulator YP_003199155.1 2606371 D 485915 CDS YP_003199156.1 258406414 8420152 2607058..2607867 1 NC_013223.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: gme:Gmet_2909 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase 2607867 8420152 Dret_2294 Desulfohalobium retbaense DSM 5692 phosphomethylpyrimidine kinase YP_003199156.1 2607058 D 485915 CDS YP_003199157.1 258406415 8420153 2607848..2608630 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:bll3318 ABC transporter ATP-binding protein; ABC transporter 2608630 8420153 Dret_2295 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003199157.1 2607848 D 485915 CDS YP_003199158.1 258406416 8420154 2608612..2609364 1 NC_013223.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_04310 ABC-type transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2609364 8420154 Dret_2296 Desulfohalobium retbaense DSM 5692 binding-protein-dependent transport system inner membrane protein YP_003199158.1 2608612 D 485915 CDS YP_003199159.1 258406417 8420155 2609697..2610635 1 NC_013223.1 PFAM: NMT1/THI5 like domain protein; KEGG: csa:Csal_1934 NlpA lipoprotein; NMT1/THI5 like domain-containing protein 2610635 8420155 Dret_2297 Desulfohalobium retbaense DSM 5692 NMT1/THI5 like domain-containing protein YP_003199159.1 2609697 D 485915 CDS YP_003199160.1 258406418 8420156 complement(2610769..2612169) 1 NC_013223.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: sfu:Sfum_3200 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 2612169 8420156 Dret_2298 Desulfohalobium retbaense DSM 5692 RNA-directed DNA polymerase YP_003199160.1 2610769 R 485915 CDS YP_003199161.1 258406419 8420157 complement(2612232..2612414) 1 NC_013223.1 hypothetical protein 2612414 8420157 Dret_2299 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199161.1 2612232 R 485915 CDS YP_003199162.1 258406420 8420158 complement(2612651..2613820) 1 NC_013223.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 2613820 8420158 Dret_2300 Desulfohalobium retbaense DSM 5692 S-adenosylmethionine synthetase YP_003199162.1 2612651 R 485915 CDS YP_003199163.1 258406421 8420159 complement(2613880..2615301) 1 NC_013223.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 2615301 8420159 Dret_2301 Desulfohalobium retbaense DSM 5692 S-adenosyl-L-homocysteine hydrolase YP_003199163.1 2613880 R 485915 CDS YP_003199164.1 258406422 8420160 complement(2615448..2616377) 1 NC_013223.1 PFAM: Methyltransferase type 11; regulatory protein ArsR; Methyltransferase type 12; SMART: regulatory protein ArsR; KEGG: dvl:Dvul_2348 methyltransferase type 11; ArsR family transcriptional regulator 2616377 8420160 Dret_2302 Desulfohalobium retbaense DSM 5692 ArsR family transcriptional regulator YP_003199164.1 2615448 R 485915 CDS YP_003199165.1 258406423 8420161 2616599..2617069 1 NC_013223.1 PFAM: protein of unknown function DUF721; KEGG: dma:DMR_42040 hypothetical protein; hypothetical protein 2617069 8420161 Dret_2303 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199165.1 2616599 D 485915 CDS YP_003199166.1 258406424 8420162 2617160..2617504 1 NC_013223.1 KEGG: dma:DMR_42030 hypothetical protein; hypothetical protein 2617504 8420162 Dret_2304 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199166.1 2617160 D 485915 CDS YP_003199167.1 258406425 8420165 2618453..2619622 1 NC_013223.1 PFAM: domain of unknown function DUF1745; FIST C domain; KEGG: dma:DMR_35190 putative phosphatase; hypothetical protein 2619622 8420165 Dret_2305 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199167.1 2618453 D 485915 CDS YP_003199168.1 258406426 8420166 2619622..2621061 1 NC_013223.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: dma:DMR_43850 two-component hybrid sensor and regulator; histidine kinase 2621061 8420166 Dret_2306 Desulfohalobium retbaense DSM 5692 histidine kinase YP_003199168.1 2619622 D 485915 CDS YP_003199169.1 258406427 8420167 complement(2621087..2622541) 1 NC_013223.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: dma:DMR_17530 succinate-semialdehyde dehydrogenase; succinate-semialdehyde dehydrogenase 2622541 8420167 Dret_2307 Desulfohalobium retbaense DSM 5692 succinate-semialdehyde dehydrogenase YP_003199169.1 2621087 R 485915 CDS YP_003199170.1 258406428 8420168 complement(2622651..2626340) 1 NC_013223.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 2626340 8420168 Dret_2308 Desulfohalobium retbaense DSM 5692 pyruvate carboxylase YP_003199170.1 2622651 R 485915 CDS YP_003199171.1 258406429 8420169 complement(2626387..2627160) 1 NC_013223.1 PFAM: ketose-bisphosphate aldolase class-II; KEGG: hypothetical protein LOC100262718; ketose-bisphosphate aldolase class-II 2627160 8420169 Dret_2309 Desulfohalobium retbaense DSM 5692 ketose-bisphosphate aldolase class-II YP_003199171.1 2626387 R 485915 CDS YP_003199172.1 258406430 8420170 complement(2627178..2627666) 1 NC_013223.1 PFAM: Rubrerythrin; KEGG: dde:Dde_1214 hypothetical protein; rubrerythrin 2627666 8420170 Dret_2310 Desulfohalobium retbaense DSM 5692 rubrerythrin YP_003199172.1 2627178 R 485915 CDS YP_003199173.1 258406431 8420171 complement(2627682..2628527) 1 NC_013223.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dma:DMR_01960 putative oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2628527 8420171 Dret_2311 Desulfohalobium retbaense DSM 5692 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_003199173.1 2627682 R 485915 CDS YP_003199174.1 258406432 8420172 complement(2628520..2629569) 1 NC_013223.1 KEGG: dma:DMR_01950 iron-sulfur binding protein; iron-sulfur binding protein 2629569 8420172 Dret_2312 Desulfohalobium retbaense DSM 5692 iron-sulfur binding protein YP_003199174.1 2628520 R 485915 CDS YP_003199175.1 258406433 8420173 complement(2629569..2630525) 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: dvl:Dvul_0829 methyl-viologen-reducing hydrogenase, delta subunit; 4Fe-4S ferredoxin 2630525 8420173 Dret_2313 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003199175.1 2629569 R 485915 CDS YP_003199176.1 258406434 8420174 complement(2630553..2630999) 1 NC_013223.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_3527 hydrogenase, iron-sulfur cluster- binding subunit, putative; methyl-viologen-reducing hydrogenase delta subunit 2630999 8420174 Dret_2314 Desulfohalobium retbaense DSM 5692 methyl-viologen-reducing hydrogenase delta subunit YP_003199176.1 2630553 R 485915 CDS YP_003199177.1 258406435 8420175 complement(2630966..2632948) 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dma:DMR_01920 heterodisulfide reductase subunit A; 4Fe-4S ferredoxin 2632948 8420175 Dret_2315 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003199177.1 2630966 R 485915 CDS YP_003199178.1 258406436 8420176 complement(2633034..2633936) 1 NC_013223.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dde:Dde_1208 succinate dehydrogenase subunit C; CoB--CoM heterodisulfide reductase 2633936 8420176 Dret_2316 Desulfohalobium retbaense DSM 5692 CoB--CoM heterodisulfide reductase YP_003199178.1 2633034 R 485915 CDS YP_003199179.1 258406437 8420177 complement(2633939..2634580) 1 NC_013223.1 KEGG: dma:DMR_01900 heterodisulfide reductase subunit C; heterodisulfide reductase subunit C 2634580 8420177 Dret_2317 Desulfohalobium retbaense DSM 5692 heterodisulfide reductase subunit C YP_003199179.1 2633939 R 485915 CDS YP_003199180.1 258406438 8420178 complement(2634698..2634922) 1 NC_013223.1 PFAM: thiamineS protein; KEGG: gme:Gmet_1044 thiamine S; hypothetical protein 2634922 8420178 Dret_2318 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199180.1 2634698 R 485915 CDS YP_003199181.1 258406439 8420179 complement(2634930..2636810) 1 NC_013223.1 KEGG: gsu:GSU0910 aldehyde:ferredoxin oxidoreductase, tungsten-containing; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase 2636810 8420179 Dret_2319 Desulfohalobium retbaense DSM 5692 Aldehyde ferredoxin oxidoreductase YP_003199181.1 2634930 R 485915 CDS YP_003199182.1 258406440 8420180 complement(2636861..2638165) 1 NC_013223.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Citrate transporter; KEGG: tmz:Tmz1t_0543 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM 2638165 8420180 Dret_2320 Desulfohalobium retbaense DSM 5692 TRAP dicarboxylate transporter subunit DctM YP_003199182.1 2636861 R 485915 CDS YP_003199183.1 258406441 8420181 complement(2638167..2638694) 1 NC_013223.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dat:HRM2_03160 DctQ1; tripartite AtP-independent periplasmic transporter subunit DctQ 2638694 8420181 Dret_2321 Desulfohalobium retbaense DSM 5692 tripartite AtP-independent periplasmic transporter subunit DctQ YP_003199183.1 2638167 R 485915 CDS YP_003199184.1 258406442 8420182 complement(2638728..2639726) 1 NC_013223.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dat:HRM2_03170 DctP1; TRAP dicarboxylate transporter subunit DctP 2639726 8420182 Dret_2322 Desulfohalobium retbaense DSM 5692 TRAP dicarboxylate transporter subunit DctP YP_003199184.1 2638728 R 485915 CDS YP_003199185.1 258406443 8420183 complement(2639799..2640653) 1 NC_013223.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rpc:RPC_1046 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase 2640653 8420183 Dret_2323 Desulfohalobium retbaense DSM 5692 6-phosphogluconate dehydrogenase YP_003199185.1 2639799 R 485915 CDS YP_003199186.1 258406444 8420184 complement(2640716..2641879) 1 NC_013223.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: dvm:DvMF_2005 altronate dehydratase; altronate dehydratase 2641879 8420184 Dret_2324 Desulfohalobium retbaense DSM 5692 altronate dehydratase YP_003199186.1 2640716 R 485915 CDS YP_003199187.1 258406445 8420185 complement(2641883..2642161) 1 NC_013223.1 PFAM: SAF domain protein; KEGG: dds:Ddes_2374 SAF domain protein; SAF domain-containing protein 2642161 8420185 Dret_2325 Desulfohalobium retbaense DSM 5692 SAF domain-containing protein YP_003199187.1 2641883 R 485915 CDS YP_003199188.1 258406446 8420186 complement(2642207..2643469) 1 NC_013223.1 PFAM: Protein of unknown function DUF2088; KEGG: dvm:DvMF_1997 hypothetical protein; hypothetical protein 2643469 8420186 Dret_2326 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199188.1 2642207 R 485915 CDS YP_003199189.1 258406447 8420187 2643739..2645307 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; GAF domain protein; KEGG: dds:Ddes_2373 sigma54 specific transcriptional regulator, fis family; Fis family NifA subfamily transcriptional regulator 2645307 8420187 Dret_2327 Desulfohalobium retbaense DSM 5692 Fis family NifA subfamily transcriptional regulator YP_003199189.1 2643739 D 485915 CDS YP_003199190.1 258406448 8420188 complement(2645350..2645688) 1 NC_013223.1 KEGG: dvm:DvMF_1926 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 2645688 8420188 Dret_2328 Desulfohalobium retbaense DSM 5692 TraR/DksA family transcriptional regulator YP_003199190.1 2645350 R 485915 CDS YP_003199191.1 258406449 8420190 2648889..2649155 1 NC_013223.1 PFAM: lipid A biosynthesis domain protein; KEGG: atc:AGR_C_4037 hypothetical protein; lipid A biosynthesis domain-containing protein 2649155 8420190 Dret_2330 Desulfohalobium retbaense DSM 5692 lipid A biosynthesis domain-containing protein YP_003199191.1 2648889 D 485915 CDS YP_003199192.1 258406450 8420191 2649536..2650669 1 NC_013223.1 PFAM: Extracellular ligand-binding receptor; KEGG: dma:DMR_01770 putative ABC transporter substrate binding protein; extracellular ligand-binding receptor 2650669 8420191 Dret_2331 Desulfohalobium retbaense DSM 5692 extracellular ligand-binding receptor YP_003199192.1 2649536 D 485915 CDS YP_003199193.1 258406451 8420192 2650669..2653551 1 NC_013223.1 KEGG: pin:Ping_1111 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; metal-dependent phosphohydrolase HD sub domain; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; metal-dependent phosphohydrolase HD region; PAS domain containing protein; diguanylate cyclase and metal dependent phosphohydrolase 2653551 8420192 Dret_2332 Desulfohalobium retbaense DSM 5692 diguanylate cyclase and metal dependent phosphohydrolase YP_003199193.1 2650669 D 485915 CDS YP_003199194.1 258406452 8420193 2653786..2655522 1 NC_013223.1 KEGG: dvm:DvMF_2350 diguanylate cyclase with PAS/PAC and GAF sensors; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein; PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 2655522 8420193 Dret_2333 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor-containing diguanylate cyclase YP_003199194.1 2653786 D 485915 CDS YP_003199195.1 258406453 8420194 complement(2655816..2656277) 1 NC_013223.1 PFAM: thioesterase superfamily protein; KEGG: dar:Daro_1078 thioesterase superfamily protein; thioesterase superfamily protein 2656277 8420194 Dret_2334 Desulfohalobium retbaense DSM 5692 thioesterase superfamily protein YP_003199195.1 2655816 R 485915 CDS YP_003199196.1 258406454 8420195 complement(2656437..2656715) 1 NC_013223.1 hypothetical protein 2656715 8420195 Dret_2335 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199196.1 2656437 R 485915 CDS YP_003199197.1 258406455 8420196 2656766..2657044 1 NC_013223.1 hypothetical protein 2657044 8420196 Dret_2336 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199197.1 2656766 D 485915 CDS YP_003199198.1 258406456 8420197 complement(2657154..2658719) 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gur:Gura_1282 putative GAF sensor protein; Fis family sigma-54 specific transcriptional regulator 2658719 8420197 Dret_2337 Desulfohalobium retbaense DSM 5692 Fis family sigma-54 specific transcriptional regulator YP_003199198.1 2657154 R 485915 CDS YP_003199199.1 258406457 8420198 2658973..2660094 1 NC_013223.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_0402 secretion protein HlyD; RND family efflux transporter MFP subunit 2660094 8420198 Dret_2338 Desulfohalobium retbaense DSM 5692 RND family efflux transporter MFP subunit YP_003199199.1 2658973 D 485915 CDS YP_003199200.1 258406458 8420199 2660098..2663226 1 NC_013223.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux- 1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: dde:Dde_0401 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 2663226 8420199 Dret_2339 Desulfohalobium retbaense DSM 5692 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_003199200.1 2660098 D 485915 CDS YP_003199201.1 258406459 8420200 2663335..2664843 1 NC_013223.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dat:HRM2_48490 outer membrane protein; NodT family RND efflux system outer membrane lipoprotein 2664843 8420200 Dret_2340 Desulfohalobium retbaense DSM 5692 NodT family RND efflux system outer membrane lipoprotein YP_003199201.1 2663335 D 485915 CDS YP_003199202.1 258406460 8420201 2664987..2665262 1 NC_013223.1 KEGG: dat:HRM2_34670 hypothetical protein; hypothetical protein 2665262 8420201 Dret_2341 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199202.1 2664987 D 485915 CDS YP_003199203.1 258406461 8420202 2665672..2666745 1 NC_013223.1 hypothetical protein 2666745 8420202 Dret_2342 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199203.1 2665672 D 485915 CDS YP_003199204.1 258406462 8420203 2666742..2666918 1 NC_013223.1 hypothetical protein 2666918 8420203 Dret_2343 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199204.1 2666742 D 485915 CDS YP_003199205.1 258406463 8420204 2667134..2671060 1 NC_013223.1 KEGG: dat:HRM2_00160 hypothetical protein; hypothetical protein 2671060 8420204 Dret_2344 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199205.1 2667134 D 485915 CDS YP_003199206.1 258406464 8420205 complement(2671557..2672507) 1 NC_013223.1 PFAM: 17 kDa surface antigen; SH3 type 3 domain protein; protein of unknown function DUF1058; KEGG: ppw:PputW619_3912 SH3 type 3 domain- containing protein; 17 kDa surface antigen 2672507 8420205 Dret_2345 Desulfohalobium retbaense DSM 5692 17 kDa surface antigen YP_003199206.1 2671557 R 485915 CDS YP_003199207.1 258406465 8420206 complement(2672973..2674511) 1 NC_013223.1 PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; KEGG: hypothetical protein; WD40 repeat, subgroup 2674511 8420206 Dret_2346 Desulfohalobium retbaense DSM 5692 WD40 repeat, subgroup YP_003199207.1 2672973 R 485915 CDS YP_003199208.1 258406466 8420207 complement(2674626..2676680) 1 NC_013223.1 KEGG: mxa:MXAN_4149 response regulator FrzS; hypothetical protein 2676680 8420207 Dret_2347 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199208.1 2674626 R 485915 CDS YP_003199209.1 258406467 8420208 complement(2676647..2678797) 1 NC_013223.1 KEGG: mucin-associated surface protein (MASP); hypothetical protein 2678797 8420208 Dret_2348 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199209.1 2676647 R 485915 CDS YP_003199210.1 258406468 8420209 complement(2678808..2681639) 1 NC_013223.1 SMART: PDZ/DHR/GLGF domain protein; KEGG: pmy:Pmen_3046 putative membrane-associated zinc metalloprotease; PDZ/DHR/GLGF domain-containing protein 2681639 8420209 Dret_2349 Desulfohalobium retbaense DSM 5692 PDZ/DHR/GLGF domain-containing protein YP_003199210.1 2678808 R 485915 CDS YP_003199211.1 258406469 8420210 complement(2681733..2682275) 1 NC_013223.1 hypothetical protein 2682275 8420210 Dret_2350 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199211.1 2681733 R 485915 CDS YP_003199212.1 258406470 8420211 complement(2682734..2683210) 1 NC_013223.1 PFAM: heat shock protein Hsp20; KEGG: bja:blr4637 HspC2 heat shock protein; heat shock protein Hsp20 2683210 8420211 Dret_2351 Desulfohalobium retbaense DSM 5692 heat shock protein Hsp20 YP_003199212.1 2682734 R 485915 CDS YP_003199213.1 258406471 8420212 complement(2683797..2684504) 1 NC_013223.1 PFAM: Abortive infection protein; KEGG: tgr:Tgr7_3154 hypothetical protein; Abortive infection protein 2684504 8420212 Dret_2352 Desulfohalobium retbaense DSM 5692 Abortive infection protein YP_003199213.1 2683797 R 485915 CDS YP_003199214.1 258406472 8420213 complement(2684636..2685196) 1 NC_013223.1 hypothetical protein 2685196 8420213 Dret_2353 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199214.1 2684636 R 485915 CDS YP_003199215.1 258406473 8420214 2685366..2685644 1 NC_013223.1 hypothetical protein 2685644 8420214 Dret_2354 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199215.1 2685366 D 485915 CDS YP_003199216.1 258406474 8420215 2686238..2687395 1 NC_013223.1 PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1647 major facilitator superfamily protein; major facilitator superfamily protein 2687395 8420215 Dret_2355 Desulfohalobium retbaense DSM 5692 major facilitator superfamily protein YP_003199216.1 2686238 D 485915 CDS YP_003199217.1 258406475 8420216 2688186..2690225 1 NC_013223.1 PFAM: histidine kinase HAMP region domain protein; Stage II sporulation E family protein; SMART: histidine kinase HAMP region domain protein; protein phosphatase 2C domain protein; KEGG: pau:PA14_02150 hypothetical protein; protein serine/threonine phosphatase 2690225 8420216 Dret_2356 Desulfohalobium retbaense DSM 5692 protein serine/threonine phosphatase YP_003199217.1 2688186 D 485915 CDS YP_003199218.1 258406476 8420217 2690407..2691165 1 NC_013223.1 KEGG: ppd:Ppro_1341 response regulator receiver modulated diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 2691165 8420217 Dret_2357 Desulfohalobium retbaense DSM 5692 diguanylate cyclase YP_003199218.1 2690407 D 485915 CDS YP_003199219.1 258406477 8420218 2691155..2691700 1 NC_013223.1 KEGG: dde:Dde_3046 hypothetical protein; hypothetical protein 2691700 8420218 Dret_2358 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199219.1 2691155 D 485915 CDS YP_003199220.1 258406478 8420219 2691887..2692270 1 NC_013223.1 PFAM: Domain of unknown function DUF1987; KEGG: dde:Dde_3045 hypothetical protein; hypothetical protein 2692270 8420219 Dret_2359 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199220.1 2691887 D 485915 CDS YP_003199221.1 258406479 8420220 complement(2693201..2694052) 1 NC_013223.1 KEGG: acp:A2cp1_0340 split soret cytochrome c precursor; split soret cytochrome c precursor 2694052 8420220 Dret_2360 Desulfohalobium retbaense DSM 5692 split soret cytochrome c precursor YP_003199221.1 2693201 R 485915 CDS YP_003199222.1 258406480 8420221 2694285..2695637 1 NC_013223.1 KEGG: sat:SYN_01191 transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; SMART: AAA ATPase; PAS modulated Fis family sigma-54-specific transcriptional regulator 2695637 8420221 Dret_2361 Desulfohalobium retbaense DSM 5692 PAS modulated Fis family sigma-54-specific transcriptional regulator YP_003199222.1 2694285 D 485915 CDS YP_003199223.1 258406481 8420222 2696487..2697881 1 NC_013223.1 PFAM: ATPase; DUF234 DEXX-box ATPase; KEGG: sat:SYN_01513 ATPase; ATPase 2697881 8420222 Dret_2362 Desulfohalobium retbaense DSM 5692 ATPase YP_003199223.1 2696487 D 485915 CDS YP_003199224.1 258406482 8420223 2697920..2698273 1 NC_013223.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sat:SYN_01508 transcriptional regulator helix turn helix; XRE family transcriptional regulator 2698273 8420223 Dret_2363 Desulfohalobium retbaense DSM 5692 XRE family transcriptional regulator YP_003199224.1 2697920 D 485915 CDS YP_003199225.1 258406483 8420224 complement(2698945..2699478) 1 NC_013223.1 hypothetical protein 2699478 8420224 Dret_2364 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199225.1 2698945 R 485915 CDS YP_003199226.1 258406484 8420225 2700179..2701000 1 NC_013223.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_0500 ferredoxin-nitroreductase protein; nitroreductase 2701000 8420225 Dret_2365 Desulfohalobium retbaense DSM 5692 nitroreductase YP_003199226.1 2700179 D 485915 CDS YP_003199227.1 258406485 8420226 complement(2701212..2701724) 1 NC_013223.1 hypothetical protein 2701724 8420226 Dret_2366 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199227.1 2701212 R 485915 CDS YP_003199228.1 258406486 8420227 2702121..2703467 1 NC_013223.1 KEGG: asu:Asuc_1537 hypothetical protein; hypothetical protein 2703467 8420227 Dret_2367 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199228.1 2702121 D 485915 CDS YP_003199229.1 258406487 8420229 2704409..2708359 1 NC_013223.1 KEGG: mca:MCA1204 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold- 3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein; ATP- binding region ATPase domain protein; multi-sensor hybrid histidine kinase 2708359 8420229 Dret_2369 Desulfohalobium retbaense DSM 5692 multi-sensor hybrid histidine kinase YP_003199229.1 2704409 D 485915 CDS YP_003199230.1 258406488 8420230 2708352..2709464 1 NC_013223.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: dma:DMR_29640 response regulator receiver protein; response regulator receiver modulated metal dependent phosphohydrolase 2709464 8420230 Dret_2370 Desulfohalobium retbaense DSM 5692 response regulator receiver modulated metal dependent phosphohydrolase YP_003199230.1 2708352 D 485915 CDS YP_003199231.1 258406489 8420231 complement(2709728..2710021) 1 NC_013223.1 hypothetical protein 2710021 8420231 Dret_2371 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199231.1 2709728 R 485915 CDS YP_003199232.1 258406490 8420232 complement(2710179..2710760) 1 NC_013223.1 hypothetical protein 2710760 8420232 Dret_2372 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199232.1 2710179 R 485915 CDS YP_003199233.1 258406491 8420233 complement(2710810..2712966) 1 NC_013223.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dal:Dalk_0094 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2712966 8420233 Dret_2373 Desulfohalobium retbaense DSM 5692 methyl-accepting chemotaxis sensory transducer YP_003199233.1 2710810 R 485915 CDS YP_003199234.1 258406492 8420234 2713607..2714563 1 NC_013223.1 KEGG: dat:HRM2_06360 hypothetical protein; serine/threonine protein kinase 2714563 8420234 Dret_2374 Desulfohalobium retbaense DSM 5692 serine/threonine protein kinase YP_003199234.1 2713607 D 485915 CDS YP_003199235.1 258406493 8420235 2714699..2715208 1 NC_013223.1 PFAM: UspA domain protein; KEGG: dma:DMR_22770 hypothetical protein; UspA domain-containing protein 2715208 8420235 Dret_2375 Desulfohalobium retbaense DSM 5692 UspA domain-containing protein YP_003199235.1 2714699 D 485915 CDS YP_003199236.1 258406494 8420236 complement(2715395..2716921) 1 NC_013223.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: cvi:CV_4302 high-affinity choline transport protein; choline/carnitine/betaine transporter 2716921 8420236 Dret_2376 Desulfohalobium retbaense DSM 5692 choline/carnitine/betaine transporter YP_003199236.1 2715395 R 485915 CDS YP_003199237.1 258406495 8420237 complement(2716925..2717725) 1 NC_013223.1 PFAM: UspA domain protein; KEGG: lpf:lpl2309 hypothetical protein; UspA domain-containing protein 2717725 8420237 Dret_2377 Desulfohalobium retbaense DSM 5692 UspA domain-containing protein YP_003199237.1 2716925 R 485915 CDS YP_003199238.1 258406496 8420238 complement(2717975..2721091) 1 NC_013223.1 PFAM: acriflavin resistance protein; KEGG: dat:HRM2_02370 cobalt-zinc-cadmium resistance protein CzcA-like protein; acriflavin resistance protein 2721091 8420238 Dret_2378 Desulfohalobium retbaense DSM 5692 acriflavin resistance protein YP_003199238.1 2717975 R 485915 CDS YP_003199239.1 258406497 8420239 complement(2721088..2722320) 1 NC_013223.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dat:HRM2_02380 putative membrane-fusion protein; RND family efflux transporter MFP subunit 2722320 8420239 Dret_2379 Desulfohalobium retbaense DSM 5692 RND family efflux transporter MFP subunit YP_003199239.1 2721088 R 485915 CDS YP_003199240.1 258406498 8420240 complement(2722317..2723762) 1 NC_013223.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dat:HRM2_02390 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 2723762 8420240 Dret_2380 Desulfohalobium retbaense DSM 5692 NodT family RND efflux system outer membrane lipoprotein YP_003199240.1 2722317 R 485915 CDS YP_003199241.1 258406499 8420241 2724267..2724668 1 NC_013223.1 PFAM: AIG2 family protein; KEGG: azo:azo2848 putative AIG2-like protein; AIG2 family protein 2724668 8420241 Dret_2381 Desulfohalobium retbaense DSM 5692 AIG2 family protein YP_003199241.1 2724267 D 485915 CDS YP_003199242.1 258406500 8420242 complement(2724830..2725144) 1 NC_013223.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: dal:Dalk_2029 cupin 2 conserved barrel domain protein; cupin 2 barrel domain-containing protein 2725144 8420242 Dret_2382 Desulfohalobium retbaense DSM 5692 cupin 2 barrel domain-containing protein YP_003199242.1 2724830 R 485915 CDS YP_003199243.1 258406501 8420243 complement(2725365..2726786) 1 NC_013223.1 KEGG: dal:Dalk_2563 hypothetical protein; hypothetical protein 2726786 8420243 Dret_2383 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199243.1 2725365 R 485915 CDS YP_003199244.1 258406502 8420244 complement(2726822..2727379) 1 NC_013223.1 PFAM: NapC/NirT cytochrome c domain protein; KEGG: dal:Dalk_2564 NapC/NirT cytochrome c domain protein; NapC/NirT cytochrome c domain-containing protein 2727379 8420244 Dret_2384 Desulfohalobium retbaense DSM 5692 NapC/NirT cytochrome c domain-containing protein YP_003199244.1 2726822 R 485915 CDS YP_003199245.1 258406503 8420245 complement(2727720..2728520) 1 NC_013223.1 KEGG: dma:DMR_24470 hypothetical protein; hypothetical protein 2728520 8420245 Dret_2385 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199245.1 2727720 R 485915 CDS YP_003199246.1 258406504 8420246 complement(2728577..2730277) 1 NC_013223.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 2730277 8420246 Dret_2386 Desulfohalobium retbaense DSM 5692 hydroxylamine reductase YP_003199246.1 2728577 R 485915 CDS YP_003199247.1 258406505 8420247 2730589..2731500 1 NC_013223.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pag:PLES_42621 hypothetical protein; hypothetical protein 2731500 8420247 Dret_2387 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199247.1 2730589 D 485915 CDS YP_003199248.1 258406506 8420248 2731702..2732130 1 NC_013223.1 KEGG: hypothetical protein; hypothetical protein 2732130 8420248 Dret_2388 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199248.1 2731702 D 485915 CDS YP_003199249.1 258406507 8420249 complement(2732368..2733714) 1 NC_013223.1 KEGG: dma:DMR_06110 glutamine synthetase type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; glutamine synthetase, type I 2733714 8420249 Dret_2389 Desulfohalobium retbaense DSM 5692 glutamine synthetase, type I YP_003199249.1 2732368 R 485915 CDS YP_003199250.1 258406508 8420250 2734719..2735189 1 NC_013223.1 KEGG: dma:DMR_45210 putative zinc resistance- associated protein precursor; putative zinc resistance-associated protein 2735189 8420250 Dret_2390 Desulfohalobium retbaense DSM 5692 putative zinc resistance-associated protein YP_003199250.1 2734719 D 485915 CDS YP_003199251.1 258406509 8420251 2735314..2737035 1 NC_013223.1 PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; KEGG: dde:Dde_1684 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase 2737035 8420251 Dret_2391 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor signal transduction histidine kinase YP_003199251.1 2735314 D 485915 CDS YP_003199252.1 258406510 8420252 2737103..2738479 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dde:Dde_1685 two component Fis family transcriptional regulator; two component, sigma54 specific, transcriptional regulator, Fis family 2738479 8420252 Dret_2392 Desulfohalobium retbaense DSM 5692 two component, sigma54 specific, transcriptional regulator, Fis family YP_003199252.1 2737103 D 485915 CDS YP_003199253.1 258406511 8420253 2739216..2739857 1 NC_013223.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; Redoxin domain protein; KEGG: dde:Dde_2560 3-Cys thioredoxin peroxidase / 1- Cys peroxiredoxin; peroxiredoxin 2739857 8420253 Dret_2393 Desulfohalobium retbaense DSM 5692 peroxiredoxin YP_003199253.1 2739216 D 485915 CDS YP_003199254.1 258406512 8420254 complement(2740034..2740864) 1 NC_013223.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: dps:DP0145 hypothetical protein; aspartate/glutamate/uridylate kinase 2740864 8420254 Dret_2394 Desulfohalobium retbaense DSM 5692 aspartate/glutamate/uridylate kinase YP_003199254.1 2740034 R 485915 CDS YP_003199255.1 258406513 8420255 complement(2740861..2741076) 1 NC_013223.1 KEGG: pca:Pcar_2385 hypothetical protein; hypothetical protein 2741076 8420255 Dret_2395 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199255.1 2740861 R 485915 CDS YP_003199256.1 258406514 8420256 complement(2741264..2742277) 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dal:Dalk_1502 ABC transporter related; ABC transporter 2742277 8420256 Dret_2396 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003199256.1 2741264 R 485915 CDS YP_003199257.1 258406515 8420257 complement(2742278..2742973) 1 NC_013223.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_1501 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2742973 8420257 Dret_2397 Desulfohalobium retbaense DSM 5692 binding-protein-dependent transport system inner membrane protein YP_003199257.1 2742278 R 485915 CDS YP_003199258.1 258406516 8420258 complement(2743060..2743965) 1 NC_013223.1 KEGG: dps:DP0331 hypothetical protein; hypothetical protein 2743965 8420258 Dret_2398 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199258.1 2743060 R 485915 CDS YP_003199259.1 258406517 8420259 2744285..2745145 1 NC_013223.1 KEGG: dvu:DVU0064 hypothetical protein; hypothetical protein 2745145 8420259 Dret_2399 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199259.1 2744285 D 485915 CDS YP_003199260.1 258406518 8420260 complement(2745146..2745952) 1 NC_013223.1 PFAM: protein of unknown function DUF82; KEGG: acp:A2cp1_3352 protein of unknown function DUF82; hypothetical protein 2745952 8420260 Dret_2400 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199260.1 2745146 R 485915 CDS YP_003199261.1 258406519 8420261 2745972..2747219 1 NC_013223.1 PFAM: peptidase M48 Ste24p; KEGG: dat:HRM2_15460 endopeptidase family protein; Ste24 endopeptidase 2747219 8420261 Dret_2401 Desulfohalobium retbaense DSM 5692 Ste24 endopeptidase YP_003199261.1 2745972 D 485915 CDS YP_003199262.1 258406520 8420262 2747212..2750295 1 NC_013223.1 PFAM: UvrD/REP helicase; KEGG: dde:Dde_3499 ATP-dependent DNA helicase UvrD; UvrD/REP helicase 2750295 8420262 Dret_2402 Desulfohalobium retbaense DSM 5692 UvrD/REP helicase YP_003199262.1 2747212 D 485915 CDS YP_003199263.1 258406521 8420263 2750341..2751438 1 NC_013223.1 PFAM: phosphoesterase RecJ domain protein; KEGG: dvm:DvMF_1755 phosphoesterase RecJ domain protein; phosphoesterase RecJ domain-containing protein 2751438 8420263 Dret_2403 Desulfohalobium retbaense DSM 5692 phosphoesterase RecJ domain-containing protein YP_003199263.1 2750341 D 485915 CDS YP_003199264.1 258406522 8420264 2751447..2753984 1 NC_013223.1 KEGG: dvm:DvMF_1713 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: DNA-directed DNA polymerase; Helix-hairpin- helix domain protein class 2; 5'-3' exonuclease; DNA polymerase I 2753984 8420264 Dret_2404 Desulfohalobium retbaense DSM 5692 DNA polymerase I YP_003199264.1 2751447 D 485915 CDS YP_003199265.1 258406523 8420265 2754104..2755291 1 NC_013223.1 PFAM: aminotransferase class V; KEGG: dvu:DVU0494 aminotransferase, class V; class V aminotransferase 2755291 8420265 Dret_2405 Desulfohalobium retbaense DSM 5692 class V aminotransferase YP_003199265.1 2754104 D 485915 CDS YP_003199266.1 258406524 8420266 2755359..2755691 1 NC_013223.1 PFAM: Domain of unknown function DUF1844; KEGG: dal:Dalk_3378 domain of unknown function DUF1844; hypothetical protein 2755691 8420266 Dret_2406 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199266.1 2755359 D 485915 CDS YP_003199267.1 258406525 8420267 2755702..2756757 1 NC_013223.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 2756757 argC 8420267 argC Desulfohalobium retbaense DSM 5692 N-acetyl-gamma-glutamyl-phosphate reductase YP_003199267.1 2755702 D 485915 CDS YP_003199268.1 258406526 8420268 complement(2756801..2758090) 1 NC_013223.1 KEGG: dma:DMR_05110 putative phenylacetate-coenzyme A ligase; phenylacetate--CoA ligase 2758090 8420268 Dret_2408 Desulfohalobium retbaense DSM 5692 phenylacetate--CoA ligase YP_003199268.1 2756801 R 485915 CDS YP_003199269.1 258406527 8420269 2758163..2758936 1 NC_013223.1 PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: dvm:DvMF_1037 peptidase A24A domain protein; prepilin peptidase 2758936 8420269 Dret_2409 Desulfohalobium retbaense DSM 5692 prepilin peptidase YP_003199269.1 2758163 D 485915 CDS YP_003199270.1 258406528 8420270 2759054..2759776 1 NC_013223.1 PFAM: formate dehydrogenase subunit FdhD; KEGG: dvm:DvMF_1232 formate dehydrogenase accessory protein FdhD, putative; formate dehydrogenase subunit FdhD 2759776 8420270 Dret_2410 Desulfohalobium retbaense DSM 5692 formate dehydrogenase subunit FdhD YP_003199270.1 2759054 D 485915 CDS YP_003199271.1 258406529 8420271 complement(2760423..2763410) 1 NC_013223.1 PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: dde:Dde_3191 phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase 2763410 8420271 Dret_2411 Desulfohalobium retbaense DSM 5692 Phosphoribosylformylglycinamidine synthase YP_003199271.1 2760423 R 485915 CDS YP_003199272.1 258406530 8420272 complement(2763438..2764406) 1 NC_013223.1 PFAM: Polyprenyl synthetase; KEGG: dma:DMR_35820 octaprenyl-diphosphate synthase; Dimethylallyltranstransferase 2764406 8420272 Dret_2412 Desulfohalobium retbaense DSM 5692 Dimethylallyltranstransferase YP_003199272.1 2763438 R 485915 CDS YP_003199273.1 258406531 8420273 complement(2764448..2765308) 1 NC_013223.1 PFAM: protein of unknown function DUF191; KEGG: dma:DMR_35810 hypothetical protein; hypothetical protein 2765308 8420273 Dret_2413 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199273.1 2764448 R 485915 CDS YP_003199274.1 258406532 8420274 complement(2765305..2766063) 1 NC_013223.1 TIGRFAM: futalosine nucleosidase; PFAM: purine or other phosphorylase family 1; KEGG: dde:Dde_3188 hypothetical protein; futalosine nucleosidase 2766063 8420274 Dret_2414 Desulfohalobium retbaense DSM 5692 futalosine nucleosidase YP_003199274.1 2765305 R 485915 CDS YP_003199275.1 258406533 8420275 complement(2766065..2767396) 1 NC_013223.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; KEGG: dde:Dde_3187 UDP-glucose/GDP-mannose dehydrogenase family protein; nucleotide sugar dehydrogenase 2767396 8420275 Dret_2415 Desulfohalobium retbaense DSM 5692 nucleotide sugar dehydrogenase YP_003199275.1 2766065 R 485915 CDS YP_003199276.1 258406534 8420276 2767488..2767691 1 NC_013223.1 PFAM: Protein of unknown function DUF2065; KEGG: dma:DMR_35780 hypothetical membrane protein; hypothetical protein 2767691 8420276 Dret_2416 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199276.1 2767488 D 485915 CDS YP_003199277.1 258406535 8420277 complement(2767784..2768536) 1 NC_013223.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dvm:DvMF_2496 ubiquinone/menaquinone biosynthesis methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 2768536 8420277 Dret_2417 Desulfohalobium retbaense DSM 5692 ubiquinone/menaquinone biosynthesis methyltransferase YP_003199277.1 2767784 R 485915 CDS YP_003199278.1 258406536 8420278 complement(2768520..2768699) 1 NC_013223.1 KEGG: dma:DMR_35760 hypothetical protein; hypothetical protein 2768699 8420278 Dret_2418 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199278.1 2768520 R 485915 CDS YP_003199279.1 258406537 8420279 complement(2768948..2769820) 1 NC_013223.1 KEGG: hypothetical protein; hypothetical protein 2769820 8420279 Dret_2419 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199279.1 2768948 R 485915 CDS YP_003199280.1 258406538 8420280 complement(2770039..2770449) 1 NC_013223.1 PFAM: cytochrome c class III; KEGG: dma:DMR_02560 cytochrome c3; cytochrome c class III 2770449 8420280 Dret_2420 Desulfohalobium retbaense DSM 5692 cytochrome c class III YP_003199280.1 2770039 R 485915 CDS YP_003199281.1 258406539 8420281 complement(2770570..2771838) 1 NC_013223.1 TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: dde:Dde_3180 glutamate-1-semialdehyde aminotransferase; glutamate-1-semialdehyde-2,1-aminomutase 2771838 8420281 Dret_2421 Desulfohalobium retbaense DSM 5692 glutamate-1-semialdehyde-2,1-aminomutase YP_003199281.1 2770570 R 485915 CDS YP_003199282.1 258406540 8420282 complement(2771983..2772468) 1 NC_013223.1 SMART: Transcription regulator, AsnC-type; KEGG: dma:DMR_11820 putative DNA-binding protein; putative transcriptional regulator, AsnC family 2772468 8420282 Dret_2422 Desulfohalobium retbaense DSM 5692 putative transcriptional regulator, AsnC family YP_003199282.1 2771983 R 485915 CDS YP_003199283.1 258406541 8420283 2772816..2773808 1 NC_013223.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; NADP oxidoreductase coenzyme F420-dependent; KEGG: dma:DMR_11830 NAD(P)H-dependent glycerol-3- phosphate dehydrogenase; glycerol-3-phosphate dehydrogenase 2773808 8420283 Dret_2423 Desulfohalobium retbaense DSM 5692 glycerol-3-phosphate dehydrogenase YP_003199283.1 2772816 D 485915 CDS YP_003199284.1 258406542 8420284 2773774..2776218 1 NC_013223.1 PFAM: outer membrane efflux protein; KEGG: pca:Pcar_3003 outer membrane efflux protein; outer membrane efflux protein 2776218 8420284 Dret_2424 Desulfohalobium retbaense DSM 5692 outer membrane efflux protein YP_003199284.1 2773774 D 485915 CDS YP_003199285.1 258406543 8420285 2776272..2777840 1 NC_013223.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: tgr:Tgr7_0656 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase 2777840 8420285 Dret_2425 Desulfohalobium retbaense DSM 5692 Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase YP_003199285.1 2776272 D 485915 CDS YP_003199286.1 258406544 8420286 2777837..2778934 1 NC_013223.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pca:Pcar_3002 membrane-fusion protein, component of multidrug efflux system; RND family efflux transporter MFP subunit 2778934 8420286 Dret_2426 Desulfohalobium retbaense DSM 5692 RND family efflux transporter MFP subunit YP_003199286.1 2777837 D 485915 CDS YP_003199287.1 258406545 8420287 2778973..2782032 1 NC_013223.1 PFAM: acriflavin resistance protein; KEGG: pca:Pcar_3001 cation-multidrug efflux pump; acriflavin resistance protein 2782032 8420287 Dret_2427 Desulfohalobium retbaense DSM 5692 acriflavin resistance protein YP_003199287.1 2778973 D 485915 CDS YP_003199288.1 258406546 8420288 2782035..2782781 1 NC_013223.1 KEGG: pca:Pcar_1926 putative lipoprotein; putative lipoprotein 2782781 8420288 Dret_2428 Desulfohalobium retbaense DSM 5692 putative lipoprotein YP_003199288.1 2782035 D 485915 CDS YP_003199289.1 258406547 8420289 complement(2782787..2784346) 1 NC_013223.1 PFAM: FAD dependent oxidoreductase; KEGG: dat:HRM2_22630 GlpA; FAD dependent oxidoreductase 2784346 8420289 Dret_2429 Desulfohalobium retbaense DSM 5692 FAD dependent oxidoreductase YP_003199289.1 2782787 R 485915 CDS YP_003199290.1 258406548 8420290 complement(2784377..2784739) 1 NC_013223.1 PFAM: diacylglycerol kinase; KEGG: tau:Tola_1000 diacylglycerol kinase; diacylglycerol kinase 2784739 8420290 Dret_2430 Desulfohalobium retbaense DSM 5692 diacylglycerol kinase YP_003199290.1 2784377 R 485915 CDS YP_003199291.1 258406549 8420291 complement(2784790..2785341) 1 NC_013223.1 KEGG: dvu:DVU0400 hypothetical protein; hypothetical protein 2785341 8420291 Dret_2431 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199291.1 2784790 R 485915 CDS YP_003199292.1 258406550 8420292 2785642..2786928 1 NC_013223.1 KEGG: dvm:DvMF_1153 phenylacetate--CoA ligase; phenylacetate--CoA ligase 2786928 8420292 Dret_2432 Desulfohalobium retbaense DSM 5692 phenylacetate--CoA ligase YP_003199292.1 2785642 D 485915 CDS YP_003199293.1 258406551 8420293 complement(2787022..2788344) 1 NC_013223.1 PFAM: Citrate transporter; Arsenical pump membrane protein; KEGG: dma:DMR_06440 arsenical pump membrane protein; citrate transporter 2788344 8420293 Dret_2433 Desulfohalobium retbaense DSM 5692 citrate transporter YP_003199293.1 2787022 R 485915 CDS YP_003199294.1 258406552 8420294 complement(2788421..2788927) 1 NC_013223.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dma:DMR_06450 hypothetical protein; hypothetical protein 2788927 8420294 Dret_2434 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199294.1 2788421 R 485915 CDS YP_003199295.1 258406553 8420295 complement(2789319..2789825) 1 NC_013223.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dma:DMR_06450 hypothetical protein; hypothetical protein 2789825 8420295 Dret_2435 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199295.1 2789319 R 485915 CDS YP_003199296.1 258406554 8420296 complement(2790018..2792828) 1 NC_013223.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; cytoplasmic chaperone TorD family protein; molydopterin dinucleotide-binding region; KEGG: dat:HRM2_41650 multi-domain fusion protein (anaerobic dehydrogenase/molybdopterin oxidoreductase/anaerobic formate hydrogen lyase 4Fe-4S complex); molybdopterin oxidoreductase 2792828 8420296 Dret_2436 Desulfohalobium retbaense DSM 5692 molybdopterin oxidoreductase YP_003199296.1 2790018 R 485915 CDS YP_003199297.1 258406555 8420297 complement(2793016..2793804) 1 NC_013223.1 PFAM: protein of unknown function DUF169; KEGG: dvm:DvMF_2193 protein of unknown function DUF169; hypothetical protein 2793804 8420297 Dret_2437 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199297.1 2793016 R 485915 CDS YP_003199298.1 258406556 8420298 complement(2793853..2794287) 1 NC_013223.1 KEGG: ret:RHE_PE00114 sugar ABC transporter, permease protein; hypothetical protein 2794287 8420298 Dret_2438 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199298.1 2793853 R 485915 CDS YP_003199299.1 258406557 8420299 complement(2794271..2794870) 1 NC_013223.1 KEGG: dat:HRM2_12100 hypothetical protein; hypothetical protein 2794870 8420299 Dret_2439 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199299.1 2794271 R 485915 CDS YP_003199300.1 258406558 8420300 complement(2795013..2796716) 1 NC_013223.1 PFAM: protein of unknown function DUF81; KEGG: dat:HRM2_12110 hypothetical protein; hypothetical protein 2796716 8420300 Dret_2440 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199300.1 2795013 R 485915 CDS YP_003199301.1 258406559 8420301 2797571..2798932 1 NC_013223.1 PFAM: outer membrane efflux protein; KEGG: dvl:Dvul_0283 outer membrane efflux protein; outer membrane efflux protein 2798932 8420301 Dret_2441 Desulfohalobium retbaense DSM 5692 outer membrane efflux protein YP_003199301.1 2797571 D 485915 CDS YP_003199302.1 258406560 8420302 2799006..2800958 1 NC_013223.1 KEGG: dma:DMR_02070 putative response regulator receiver protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2800958 8420302 Dret_2442 Desulfohalobium retbaense DSM 5692 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_003199302.1 2799006 D 485915 CDS YP_003199303.1 258406561 8420303 2800985..2801902 1 NC_013223.1 PFAM: Auxin Efflux Carrier; KEGG: avn:Avin_49900 permease; auxin efflux carrier family protein 2801902 8420303 Dret_2443 Desulfohalobium retbaense DSM 5692 auxin efflux carrier family protein YP_003199303.1 2800985 D 485915 CDS YP_003199304.1 258406562 8420304 2802965..2803594 1 NC_013223.1 KEGG: lhk:LHK_00160 hypothetical protein; hypothetical protein 2803594 8420304 Dret_2444 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199304.1 2802965 D 485915 CDS YP_003199305.1 258406563 8420305 2803624..2804925 1 NC_013223.1 KEGG: smt:Smal_2090 hypothetical protein; hypothetical protein 2804925 8420305 Dret_2445 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199305.1 2803624 D 485915 CDS YP_003199306.1 258406564 8420306 2805010..2805717 1 NC_013223.1 PFAM: peptidase C39 bacteriocin processing; KEGG: pag:PLES_33701 putative double-glycine peptidase; peptidase C39 bacteriocin processing 2805717 8420306 Dret_2446 Desulfohalobium retbaense DSM 5692 peptidase C39 bacteriocin processing YP_003199306.1 2805010 D 485915 CDS YP_003199307.1 258406565 8420307 2805742..2806221 1 NC_013223.1 hypothetical protein 2806221 8420307 Dret_2447 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199307.1 2805742 D 485915 CDS YP_003199308.1 258406566 8420308 2806488..2807957 1 NC_013223.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: geo:Geob_1785 sigma54 specific transcriptional regulator, Fis family; Fis family sigma-54 specific transcriptional regulator 2807957 8420308 Dret_2448 Desulfohalobium retbaense DSM 5692 Fis family sigma-54 specific transcriptional regulator YP_003199308.1 2806488 D 485915 CDS YP_003199309.1 258406567 8420309 2808127..2808645 1 NC_013223.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: dat:HRM2_22420 outer membrane protein (putative Skp protein); outer membrane chaperone Skp 2808645 8420309 Dret_2449 Desulfohalobium retbaense DSM 5692 outer membrane chaperone Skp YP_003199309.1 2808127 D 485915 CDS YP_003199310.1 258406568 8420310 2808685..2809674 1 NC_013223.1 KEGG: gur:Gura_1157 hypothetical protein; hypothetical protein 2809674 8420310 Dret_2450 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199310.1 2808685 D 485915 CDS YP_003199311.1 258406569 8420313 2810442..2811383 1 NC_013223.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: dde:Dde_3505 riboflavin kinase / FMN adenylyltransferase; riboflavin biosynthesis protein RibF 2811383 8420313 Dret_2451 Desulfohalobium retbaense DSM 5692 riboflavin biosynthesis protein RibF YP_003199311.1 2810442 D 485915 CDS YP_003199312.1 258406570 8420314 2811515..2813326 1 NC_013223.1 PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; KEGG: dde:Dde_3504 chloride channel family protein; Cl- channel voltage-gated family protein 2813326 8420314 Dret_2452 Desulfohalobium retbaense DSM 5692 Cl- channel voltage-gated family protein YP_003199312.1 2811515 D 485915 CDS YP_003199313.1 258406571 8420315 2813334..2815151 1 NC_013223.1 PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dat:HRM2_22170 EriC2; Cl- channel voltage-gated family protein 2815151 8420315 Dret_2453 Desulfohalobium retbaense DSM 5692 Cl- channel voltage-gated family protein YP_003199313.1 2813334 D 485915 CDS YP_003199314.1 258406572 8420316 complement(2815229..2816014) 1 NC_013223.1 PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; KEGG: dma:DMR_06140 putative aldolase; Fructose-bisphosphate aldolase 2816014 8420316 Dret_2454 Desulfohalobium retbaense DSM 5692 Fructose-bisphosphate aldolase YP_003199314.1 2815229 R 485915 CDS YP_003199315.1 258406573 8420317 complement(2816138..2817403) 1 NC_013223.1 PFAM: Fmu (Sun) domain protein; KEGG: dde:Dde_0122 NOL1/NOP2/sun family protein; Fmu (Sun) domain-containing protein 2817403 8420317 Dret_2455 Desulfohalobium retbaense DSM 5692 Fmu (Sun) domain-containing protein YP_003199315.1 2816138 R 485915 CDS YP_003199316.1 258406574 8420318 2817806..2818819 1 NC_013223.1 PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dde:Dde_0634 extracellular solute-binding protein; Extracellular solute-binding protein 2818819 8420318 Dret_2456 Desulfohalobium retbaense DSM 5692 Extracellular solute-binding protein YP_003199316.1 2817806 D 485915 CDS YP_003199317.1 258406575 8420319 2818825..2819295 1 NC_013223.1 KEGG: dde:Dde_0635 tripartite ATP-independent periplasmic transporters, DctQ component, putative; tripartite ATP-independent periplasmic transporters, DctQ component 2819295 8420319 Dret_2457 Desulfohalobium retbaense DSM 5692 tripartite ATP-independent periplasmic transporters, DctQ component YP_003199317.1 2818825 D 485915 CDS YP_003199318.1 258406576 8420320 2819295..2820593 1 NC_013223.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dde:Dde_0636 TRAP dicarboxylate transporter- DctM subunit; TRAP dicarboxylate transporter subunit DctM 2820593 8420320 Dret_2458 Desulfohalobium retbaense DSM 5692 TRAP dicarboxylate transporter subunit DctM YP_003199318.1 2819295 D 485915 CDS YP_003199319.1 258406577 8420321 2820626..2821525 1 NC_013223.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: dma:DMR_38980 pseudouridine synthase; pseudouridine synthase 2821525 8420321 Dret_2459 Desulfohalobium retbaense DSM 5692 pseudouridine synthase YP_003199319.1 2820626 D 485915 CDS YP_003199320.1 258406578 8420322 complement(2821731..2822543) 1 NC_013223.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: dvm:DvMF_2599 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein TIM barrel 2822543 8420322 Dret_2460 Desulfohalobium retbaense DSM 5692 xylose isomerase domain-containing protein TIM barrel YP_003199320.1 2821731 R 485915 CDS YP_003199321.1 258406579 8420323 complement(2822870..2823784) 1 NC_013223.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dvl:Dvul_0424 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 2823784 8420323 Dret_2461 Desulfohalobium retbaense DSM 5692 ErfK/YbiS/YcfS/YnhG family protein YP_003199321.1 2822870 R 485915 CDS YP_003199322.1 258406580 8420324 complement(2823760..2824368) 1 NC_013223.1 KEGG: sat:SYN_00425 hypothetical protein; hypothetical protein 2824368 8420324 Dret_2462 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199322.1 2823760 R 485915 CDS YP_003199323.1 258406581 8420325 complement(2824365..2824931) 1 NC_013223.1 KEGG: dvl:Dvul_0425 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 2824931 8420325 Dret_2463 Desulfohalobium retbaense DSM 5692 orotate phosphoribosyltransferase YP_003199323.1 2824365 R 485915 CDS YP_003199324.1 258406582 8420326 complement(2825085..2826401) 1 NC_013223.1 TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase-like; KEGG: dvm:DvMF_1468 adenylosuccinate lyase; adenylosuccinate lyase 2826401 8420326 Dret_2464 Desulfohalobium retbaense DSM 5692 adenylosuccinate lyase YP_003199324.1 2825085 R 485915 CDS YP_003199325.1 258406583 8420327 complement(2826489..2826809) 1 NC_013223.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dde:Dde_3010 hypothetical protein; FmdB family regulatory protein 2826809 8420327 Dret_2465 Desulfohalobium retbaense DSM 5692 FmdB family regulatory protein YP_003199325.1 2826489 R 485915 CDS YP_003199326.1 258406584 8420328 complement(2826886..2827002) 1 NC_013223.1 KEGG: dvm:DvMF_1466 hypothetical protein; hypothetical protein 2827002 8420328 Dret_2466 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199326.1 2826886 R 485915 CDS YP_003199327.1 258406585 8420329 complement(2827162..2828277) 1 NC_013223.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DP1667 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 2828277 8420329 Dret_2467 Desulfohalobium retbaense DSM 5692 4Fe-4S ferredoxin YP_003199327.1 2827162 R 485915 CDS YP_003199328.1 258406586 8420330 complement(2828274..2829020) 1 NC_013223.1 KEGG: dvm:DvMF_1465 hypothetical protein; hypothetical protein 2829020 8420330 Dret_2468 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199328.1 2828274 R 485915 CDS YP_003199329.1 258406587 8420331 complement(2829061..2830227) 1 NC_013223.1 PFAM: protein of unknown function DUF39; KEGG: dvm:DvMF_1464 protein of unknown function DUF39; hypothetical protein 2830227 8420331 Dret_2469 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199329.1 2829061 R 485915 CDS YP_003199330.1 258406588 8420332 2830406..2831761 1 NC_013223.1 PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; KEGG: dvm:DvMF_2081 chromosomal replication initiator protein DnaA; chromosomal replication initiator DnaA domain-containing protein 2831761 8420332 Dret_2470 Desulfohalobium retbaense DSM 5692 chromosomal replication initiator DnaA domain-containing protein YP_003199330.1 2830406 D 485915 CDS YP_003199331.1 258406589 8420333 2831894..2833075 1 NC_013223.1 KEGG: dde:Dde_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain; DNA polymerase III subunit beta 2833075 8420333 Dret_2471 Desulfohalobium retbaense DSM 5692 DNA polymerase III subunit beta YP_003199331.1 2831894 D 485915 CDS YP_003199332.1 258406590 8420334 2833079..2835463 1 NC_013223.1 KEGG: dde:Dde_0003 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA gyrase subunit B 2835463 8420334 Dret_2472 Desulfohalobium retbaense DSM 5692 DNA gyrase subunit B YP_003199332.1 2833079 D 485915 CDS YP_003199333.1 258406591 8420335 2835518..2837947 1 NC_013223.1 KEGG: dde:Dde_0004 DNA gyrase subunit A; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A; DNA gyrase subunit A 2837947 8420335 Dret_2473 Desulfohalobium retbaense DSM 5692 DNA gyrase subunit A YP_003199333.1 2835518 D 485915 CDS YP_003199334.1 258406592 8420336 complement(2838212..2839021) 1 NC_013223.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_0264 ferredoxin; RnfABCDGE type electron transport complex subunit B 2839021 8420336 Dret_2474 Desulfohalobium retbaense DSM 5692 RnfABCDGE type electron transport complex subunit B YP_003199334.1 2838212 R 485915 CDS YP_003199335.1 258406593 8420337 2839183..2840112 1 NC_013223.1 KEGG: dat:HRM2_32230 hypothetical protein; hypothetical protein 2840112 8420337 Dret_2475 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199335.1 2839183 D 485915 CDS YP_003199336.1 258406594 8420338 2840324..2840677 1 NC_013223.1 KEGG: vcj:VCD_000689 GlpM protein; GlpM protein 2840677 8420338 Dret_2476 Desulfohalobium retbaense DSM 5692 GlpM protein YP_003199336.1 2840324 D 485915 CDS YP_003199337.1 258406595 8420339 complement(2840739..2841440) 1 NC_013223.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: dde:Dde_0628 DNA polymerase III, epsilon subunit; Exonuclease RNase T and DNA polymerase III 2841440 8420339 Dret_2477 Desulfohalobium retbaense DSM 5692 Exonuclease RNase T and DNA polymerase III YP_003199337.1 2840739 R 485915 CDS YP_003199338.1 258406596 8420340 complement(2841524..2843452) 1 NC_013223.1 PFAM: protein of unknown function DUF294 nucleotidyltransferase putative; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; cyclic nucleotide-binding; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dde:Dde_0629 cyclic nucleotide-binding domain- containing protein; putative CBS domain and cyclic nucleotide- regulated nucleotidyltransferase 2843452 8420340 Dret_2478 Desulfohalobium retbaense DSM 5692 putative CBS domain and cyclic nucleotide- regulated nucleotidyltransferase YP_003199338.1 2841524 R 485915 CDS YP_003199339.1 258406597 8420341 complement(2843510..2845291) 1 NC_013223.1 TIGRFAM: probable sodium symporter protein; PFAM: Na+/solute symporter; KEGG: dde:Dde_0630 sodium:solute symporter family protein; putative sodium symporter protein 2845291 8420341 Dret_2479 Desulfohalobium retbaense DSM 5692 putative sodium symporter protein YP_003199339.1 2843510 R 485915 CDS YP_003199340.1 258406598 8420342 complement(2845378..2845626) 1 NC_013223.1 TIGRFAM: probable solute symporter protein; KEGG: hch:HCH_05071 hypothetical protein; putative solute symporter protein 2845626 8420342 Dret_2480 Desulfohalobium retbaense DSM 5692 putative solute symporter protein YP_003199340.1 2845378 R 485915 CDS YP_003199341.1 258406599 8420343 complement(2845926..2847788) 1 NC_013223.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dvl:Dvul_2222 acetate--CoA ligase; AMP-dependent synthetase and ligase 2847788 8420343 Dret_2481 Desulfohalobium retbaense DSM 5692 AMP-dependent synthetase and ligase YP_003199341.1 2845926 R 485915 CDS YP_003199342.1 258406600 8420344 complement(2847866..2848732) 1 NC_013223.1 PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: dma:DMR_06670 putative response regulator receiver protein; LytTR family two component transcriptional regulator 2848732 8420344 Dret_2482 Desulfohalobium retbaense DSM 5692 LytTR family two component transcriptional regulator YP_003199342.1 2847866 R 485915 CDS YP_003199343.1 258406601 8420345 2848929..2849297 1 NC_013223.1 KEGG: tbd:Tbd_1218 transmembrane protein; transmembrane protein 2849297 8420345 Dret_2483 Desulfohalobium retbaense DSM 5692 transmembrane protein YP_003199343.1 2848929 D 485915 CDS YP_003199344.1 258406602 8420346 2849421..2849813 1 NC_013223.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: aeh:Mlg_1512 rhodanese domain-containing protein; rhodanese domain-containing protein 2849813 8420346 Dret_2484 Desulfohalobium retbaense DSM 5692 rhodanese domain-containing protein YP_003199344.1 2849421 D 485915 CDS YP_003199345.1 258406603 8420347 2849810..2850424 1 NC_013223.1 PFAM: protein of unknown function UPF0029; KEGG: dvm:DvMF_3177 protein of unknown function UPF0029; hypothetical protein 2850424 8420347 Dret_2485 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199345.1 2849810 D 485915 CDS YP_003199346.1 258406604 8420348 2850536..2851444 1 NC_013223.1 TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase domain protein; KEGG: dma:DMR_05560 putative 6-phosphogluconate dehydrogenase; 6-phosphogluconate dehydrogenase 2851444 8420348 Dret_2486 Desulfohalobium retbaense DSM 5692 6-phosphogluconate dehydrogenase YP_003199346.1 2850536 D 485915 CDS YP_003199347.1 258406605 8420349 2851486..2853018 1 NC_013223.1 KEGG: dma:DMR_05550 glucose-6-phosphate 1- dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 2853018 8420349 Dret_2487 Desulfohalobium retbaense DSM 5692 glucose-6-phosphate 1-dehydrogenase YP_003199347.1 2851486 D 485915 CDS YP_003199348.1 258406606 8420350 2853180..2853977 1 NC_013223.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: gme:Gmet_2618 6-phosphogluconolactonase; 6-phosphogluconolactonase 2853977 8420350 Dret_2488 Desulfohalobium retbaense DSM 5692 6-phosphogluconolactonase YP_003199348.1 2853180 D 485915 CDS YP_003199349.1 258406607 8420351 2854094..2854264 1 NC_013223.1 KEGG: dvl:Dvul_2023 hypothetical protein; hypothetical protein 2854264 8420351 Dret_2489 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199349.1 2854094 D 485915 CDS YP_003199350.1 258406608 8420352 2854592..2855413 1 NC_013223.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dvl:Dvul_2022 extracellular solute-binding protein; family 3 extracellular solute-binding protein 2855413 8420352 Dret_2490 Desulfohalobium retbaense DSM 5692 family 3 extracellular solute-binding protein YP_003199350.1 2854592 D 485915 CDS YP_003199351.1 258406609 8420353 2855672..2856679 1 NC_013223.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_2021 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 2856679 8420353 Dret_2491 Desulfohalobium retbaense DSM 5692 polar amino acid ABC transporter inner membrane subunit YP_003199351.1 2855672 D 485915 CDS YP_003199352.1 258406610 8420354 2856685..2857416 1 NC_013223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvm:DvMF_1342 ABC transporter related; ABC transporter 2857416 8420354 Dret_2492 Desulfohalobium retbaense DSM 5692 ABC transporter YP_003199352.1 2856685 D 485915 CDS YP_003199353.1 258406611 8420355 2857432..2857734 1 NC_013223.1 PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: dde:Dde_0194 hypothetical protein; stress responsive alpha-beta barrel domain-containing protein 2857734 8420355 Dret_2493 Desulfohalobium retbaense DSM 5692 stress responsive alpha-beta barrel domain-containing protein YP_003199353.1 2857432 D 485915 CDS YP_003199354.1 258406612 8420356 2858097..2859752 1 NC_013223.1 PFAM: phosphoglucose isomerase (PGI); KEGG: tgr:Tgr7_0871 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 2859752 8420356 Dret_2494 Desulfohalobium retbaense DSM 5692 glucose-6-phosphate isomerase YP_003199354.1 2858097 D 485915 CDS YP_003199355.1 258406613 8420357 complement(2859770..2860534) 1 NC_013223.1 PFAM: Silent information regulator protein Sir2; KEGG: dma:DMR_13880 NAD-dependent deacetylase; silent information regulator protein Sir2 2860534 8420357 Dret_2495 Desulfohalobium retbaense DSM 5692 silent information regulator protein Sir2 YP_003199355.1 2859770 R 485915 CDS YP_003199356.1 258406614 8420358 2860721..2861221 1 NC_013223.1 KEGG: dal:Dalk_4409 putative lipoprotein; putative lipoprotein 2861221 8420358 Dret_2496 Desulfohalobium retbaense DSM 5692 putative lipoprotein YP_003199356.1 2860721 D 485915 CDS YP_003199357.1 258406615 8420359 2861248..2862465 1 NC_013223.1 KEGG: dvu:DVU3353 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase 2862465 8420359 Dret_2497 Desulfohalobium retbaense DSM 5692 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase YP_003199357.1 2861248 D 485915 CDS YP_003199358.1 258406616 8420360 2862447..2863046 1 NC_013223.1 KEGG: dvl:Dvul_0040 hypothetical protein; hypothetical protein 2863046 8420360 Dret_2498 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199358.1 2862447 D 485915 CDS YP_003199359.1 258406617 8420361 2863156..2864169 1 NC_013223.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4- dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: dvl:Dvul_0038 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2864169 8420361 Dret_2499 Desulfohalobium retbaense DSM 5692 NAD-dependent epimerase/dehydratase YP_003199359.1 2863156 D 485915 CDS YP_003199360.1 258406619 8420410 661..888 1 NC_013224.1 KEGG: pna:Pnap_4979 hypothetical protein; hypothetical protein 888 8420410 Dret_2501 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199360.1 661 D 485915 CDS YP_003199361.1 258406620 8420364 complement(930..1361) 1 NC_013224.1 hypothetical protein 1361 8420364 Dret_2502 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199361.1 930 R 485915 CDS YP_003199362.1 258406621 8420365 complement(1500..1853) 1 NC_013224.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sat:SYN_01508 transcriptional regulator helix turn helix; XRE family transcriptional regulator 1853 8420365 Dret_2503 Desulfohalobium retbaense DSM 5692 XRE family transcriptional regulator YP_003199362.1 1500 R 485915 CDS YP_003199363.1 258406622 8420366 complement(1822..2100) 1 NC_013224.1 KEGG: sat:SYN_03526 putative cytoplasmic protein; putative cytoplasmic protein 2100 8420366 Dret_2504 Desulfohalobium retbaense DSM 5692 putative cytoplasmic protein YP_003199363.1 1822 R 485915 CDS YP_003199364.1 258406623 8420367 2420..2821 1 NC_013224.1 hypothetical protein 2821 8420367 Dret_2505 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199364.1 2420 D 485915 CDS YP_003199365.1 258406624 8420368 2835..3653 1 NC_013224.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dma:DMR_p2_00010 putative chromosome partitioning protein ParA; Cobyrinic acid ac-diamide synthase 3653 8420368 Dret_2506 Desulfohalobium retbaense DSM 5692 Cobyrinic acid ac-diamide synthase YP_003199365.1 2835 D 485915 CDS YP_003199366.1 258406625 8420369 3657..5123 1 NC_013224.1 KEGG: dma:DMR_p1_00020 hypothetical protein; hypothetical protein 5123 8420369 Dret_2507 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199366.1 3657 D 485915 CDS YP_003199367.1 258406626 8420411 6547..6786 1 NC_013224.1 hypothetical protein 6786 8420411 Dret_2509 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199367.1 6547 D 485915 CDS YP_003199368.1 258406627 8420371 6987..7610 1 NC_013224.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pna:Pnap_4980 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 7610 8420371 Dret_2510 Desulfohalobium retbaense DSM 5692 Cobyrinic acid ac-diamide synthase YP_003199368.1 6987 D 485915 CDS YP_003199369.1 258406628 8420372 7620..7847 1 NC_013224.1 KEGG: pna:Pnap_4979 hypothetical protein; hypothetical protein 7847 8420372 Dret_2511 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199369.1 7620 D 485915 CDS YP_003199370.1 258406629 8420373 8925..9404 1 NC_013224.1 hypothetical protein 9404 8420373 Dret_2512 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199370.1 8925 D 485915 CDS YP_003199371.1 258406630 8420374 9533..10174 1 NC_013224.1 KEGG: conserved hypothetical protein; hypothetical protein 10174 8420374 Dret_2513 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199371.1 9533 D 485915 CDS YP_003199372.1 258406631 8420375 10683..10805 1 NC_013224.1 hypothetical protein 10805 8420375 Dret_2514 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199372.1 10683 D 485915 CDS YP_003199373.1 258406632 8420376 10786..11451 1 NC_013224.1 PFAM: nuclease (SNase domain protein); Excalibur domain protein; SMART: nuclease (SNase domain protein); KEGG: dma:DMR_41750 putative nuclease; nuclease (SNase domain protein) 11451 8420376 Dret_2515 Desulfohalobium retbaense DSM 5692 nuclease (SNase domain protein) YP_003199373.1 10786 D 485915 CDS YP_003199374.1 258406633 8420377 11423..11635 1 NC_013224.1 hypothetical protein 11635 8420377 Dret_2516 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199374.1 11423 D 485915 CDS YP_003199375.1 258406634 8420378 11686..12366 1 NC_013224.1 KEGG: conserved hypothetical protein; hypothetical protein 12366 8420378 Dret_2517 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199375.1 11686 D 485915 CDS YP_003199376.1 258406635 8420379 12631..12978 1 NC_013224.1 hypothetical protein 12978 8420379 Dret_2518 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199376.1 12631 D 485915 CDS YP_003199377.1 258406636 8420380 13024..13407 1 NC_013224.1 KEGG: dma:DMR_36590 putative transposase; hypothetical protein 13407 8420380 Dret_2519 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199377.1 13024 D 485915 CDS YP_003199378.1 258406637 8420381 13404..14297 1 NC_013224.1 PFAM: Integrase catalytic region; KEGG: dma:DMR_40700 putative transposase orfB; Integrase catalytic region 14297 8420381 Dret_2520 Desulfohalobium retbaense DSM 5692 Integrase catalytic region YP_003199378.1 13404 D 485915 CDS YP_003199379.1 258406638 8420382 14311..15426 1 NC_013224.1 KEGG: dat:HRM2_19930 hypothetical protein; hypothetical protein 15426 8420382 Dret_2521 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199379.1 14311 D 485915 CDS YP_003199380.1 258406639 8420383 15496..16902 1 NC_013224.1 KEGG: hps:HPSH_02375 type II DNA modification enzyme (methyltransferase); TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; helix- turn-helix domain protein; SMART: helix-turn-helix domain protein; XRE family transcriptional regulator 16902 8420383 Dret_2522 Desulfohalobium retbaense DSM 5692 XRE family transcriptional regulator YP_003199380.1 15496 D 485915 CDS YP_003199381.1 258406640 8420384 complement(16873..17844) 1 NC_013224.1 hypothetical protein 17844 8420384 Dret_2523 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199381.1 16873 R 485915 CDS YP_003199382.1 258406641 8420385 complement(17825..18055) 1 NC_013224.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: slo:Shew_3490 XRE family transcriptional regulator; XRE family transcriptional regulator 18055 8420385 Dret_2524 Desulfohalobium retbaense DSM 5692 XRE family transcriptional regulator YP_003199382.1 17825 R 485915 CDS YP_003199383.1 258406642 8420413 19838..20239 1 NC_013224.1 hypothetical protein 20239 8420413 Dret_2527 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199383.1 19838 D 485915 CDS YP_003199384.1 258406643 8420387 20229..20822 1 NC_013224.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: bgl:bglu_1g23800 hypothetical protein; excinuclease ABC subunit C 20822 8420387 Dret_2528 Desulfohalobium retbaense DSM 5692 excinuclease ABC subunit C YP_003199384.1 20229 D 485915 CDS YP_003199385.1 258406644 8420388 complement(20925..21581) 1 NC_013224.1 PFAM: integrase family protein; KEGG: sfu:Sfum_2367 phage integrase family protein; integrase family protein 21581 8420388 Dret_2529 Desulfohalobium retbaense DSM 5692 integrase family protein YP_003199385.1 20925 R 485915 CDS YP_003199386.1 258406645 8420389 22822..23283 1 NC_013224.1 hypothetical protein 23283 8420389 Dret_2530 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199386.1 22822 D 485915 CDS YP_003199387.1 258406646 8420390 23319..23747 1 NC_013224.1 hypothetical protein 23747 8420390 Dret_2531 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199387.1 23319 D 485915 CDS YP_003199388.1 258406647 8420391 23849..24571 1 NC_013224.1 KEGG: hypothetical protein; hypothetical protein 24571 8420391 Dret_2532 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199388.1 23849 D 485915 CDS YP_003199389.1 258406648 8420392 25239..25475 1 NC_013224.1 hypothetical protein 25475 8420392 Dret_2533 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199389.1 25239 D 485915 CDS YP_003199390.1 258406649 8420414 27776..28258 1 NC_013224.1 KEGG: ppr:PBPRA2370 putative transposase; putative transposase 28258 8420414 Dret_2535 Desulfohalobium retbaense DSM 5692 putative transposase YP_003199390.1 27776 D 485915 CDS YP_003199391.1 258406650 8420394 28324..29301 1 NC_013224.1 PFAM: Integrase catalytic region; KEGG: ppr:PBPRA1704 putative transposase; Integrase catalytic region 29301 8420394 Dret_2536 Desulfohalobium retbaense DSM 5692 Integrase catalytic region YP_003199391.1 28324 D 485915 CDS YP_003199392.1 258406651 8420395 30203..30607 1 NC_013224.1 PFAM: ROSMUCR transcriptional regulator; KEGG: dde:Dde_0303 MucR family transcriptional regulator; transcriptional regulator, MucR family 30607 8420395 Dret_2537 Desulfohalobium retbaense DSM 5692 transcriptional regulator, MucR family YP_003199392.1 30203 D 485915 CDS YP_003199393.1 258406652 8420415 complement(30965..32182) 1 NC_013224.1 PFAM: protein of unknown function DUF262; KEGG: sbl:Sbal_3373 hypothetical protein; hypothetical protein 32182 8420415 Dret_2539 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199393.1 30965 R 485915 CDS YP_003199394.1 258406653 8420397 32807..32935 1 NC_013224.1 hypothetical protein 32935 8420397 Dret_2540 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199394.1 32807 D 485915 CDS YP_003199395.1 258406654 8420398 complement(33990..34469) 1 NC_013224.1 hypothetical protein 34469 8420398 Dret_2541 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199395.1 33990 R 485915 CDS YP_003199396.1 258406655 8420399 complement(35091..35288) 1 NC_013224.1 hypothetical protein 35288 8420399 Dret_2542 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199396.1 35091 R 485915 CDS YP_003199397.1 258406656 8420400 35641..35877 1 NC_013224.1 hypothetical protein 35877 8420400 Dret_2543 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199397.1 35641 D 485915 CDS YP_003199398.1 258406657 8420401 35877..39185 1 NC_013224.1 KEGG: dma:DMR_36280 hypothetical protein; hypothetical protein 39185 8420401 Dret_2544 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199398.1 35877 D 485915 CDS YP_003199399.1 258406658 8420402 40214..40417 1 NC_013224.1 hypothetical protein 40417 8420402 Dret_2545 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199399.1 40214 D 485915 CDS YP_003199400.1 258406659 8420403 40444..41844 1 NC_013224.1 KEGG: dma:DMR_14600 hypothetical protein; hypothetical protein 41844 8420403 Dret_2546 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199400.1 40444 D 485915 CDS YP_003199401.1 258406660 8420404 41841..42299 1 NC_013224.1 hypothetical protein 42299 8420404 Dret_2547 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199401.1 41841 D 485915 CDS YP_003199402.1 258406661 8420405 42389..43027 1 NC_013224.1 PFAM: metallophosphoesterase; KEGG: reu:Reut_C6150 metallophosphoesterase; metallophosphoesterase 43027 8420405 Dret_2548 Desulfohalobium retbaense DSM 5692 metallophosphoesterase YP_003199402.1 42389 D 485915 CDS YP_003199403.1 258406662 8420406 43139..43897 1 NC_013224.1 KEGG: xcc:XCC4191 phage-related regulatory protein CII; ATPase involved in chromosome partitioning-like protein 43897 8420406 Dret_2549 Desulfohalobium retbaense DSM 5692 ATPase involved in chromosome partitioning-like protein YP_003199403.1 43139 D 485915 CDS YP_003199404.1 258406663 8420407 43922..44275 1 NC_013224.1 hypothetical protein 44275 8420407 Dret_2550 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199404.1 43922 D 485915 CDS YP_003199405.1 258406664 8420408 complement(44265..44822) 1 NC_013224.1 hypothetical protein 44822 8420408 Dret_2551 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199405.1 44265 R 485915 CDS YP_003199406.1 258406665 8420409 44877..45173 1 NC_013224.1 hypothetical protein 45173 8420409 Dret_2552 Desulfohalobium retbaense DSM 5692 hypothetical protein YP_003199406.1 44877 D 485915 CDS