-- dump date 20140619_060849 -- class Genbank::CDS -- table cds_note -- id note YP_003502764.1 TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; KEGG: pca:Pcar_0001 chromosomal replication initiator protein DnaA; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase YP_003502766.1 PFAM: aminotransferase class I and II; KEGG: sfu:Sfum_0054 aminotransferase, class I and II YP_003502767.1 KEGG: cla:Cla_0896 cation efflux family protein; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_003502768.1 PFAM: Protein of unknown function DUF2232, membrane; KEGG: sfu:Sfum_3186 hypothetical protein YP_003502769.1 KEGG: dat:HRM2_18630 RpsR; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18 YP_003502770.1 KEGG: nis:NIS_1165 single-strand DNA binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n YP_003502771.1 KEGG: dal:Dalk_0919 ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6 YP_003502772.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: geo:Geob_1027 pseudouridine synthase, RluA family; SMART: RNA-binding S4 domain protein YP_003502773.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: geo:Geob_0462 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_003502774.1 TIGRFAM: NADH-quinone oxidoreductase, B subunit; KEGG: gem:GM21_4009 NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003502775.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: potential mitochondrial NADH-Ubiquinone Oxidoreductase Complex I subunit similar to Y.lipolytica NUGM subunit, N. crassa CI-30kd and human NDUFS3; similar to C.maltosa alkane-inducible gene ALI1 ; K03936 NADH dehydrogenas-TRUNCATED- YP_003502776.1 TIGRFAM: NADH dehydrogenase I, D subunit; KEGG: gur:Gura_4241 NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa YP_003502777.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: glo:Glov_3134 NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_003502778.1 KEGG: glo:Glov_3133 NADH dehydrogenase (quinone); PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; Soluble ligand binding domain; 4Fe- 4S ferredoxin iron-sulfur binding domain protein YP_003502779.1 PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: gem:GM21_4004 molybdopterin oxidoreductase YP_003502780.1 KEGG: geo:Geob_1268 NADH dehydrogenase (quinone); PFAM: respiratory-chain NADH dehydrogenase subunit 1 YP_003502781.1 KEGG: similar to NADH dehydrogenase (ubiquinone) Fe- S protein 8 ; K03941 NADH dehydrogenase (ubiquinone) Fe-S protein 8; TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003502782.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: gur:Gura_4235 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 YP_003502783.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: geo:Geob_0472 NADH-ubiquinone oxidoreductase chain 4L YP_003502784.1 KEGG: gem:GM21_3999 proton-translocating NADH- quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein YP_003502785.1 KEGG: gur:Gura_4232 proton-translocating NADH- quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_003502786.1 KEGG: gsu:GSU0351 NADH dehydrogenase I, N subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_003502787.1 KEGG: sfu:Sfum_0416 rubrerythrin YP_003502788.1 KEGG: cju:C8J_1522 putative periplasmic protein YP_003502791.1 TIGRFAM: peptide deformylase; KEGG: afw:Anae109_0768 peptide deformylase; PFAM: formylmethionine deformylase YP_003502792.1 PFAM: protein of unknown function DUF721; KEGG: gsu:GSU0638 hypothetical protein YP_003502793.1 KEGG: pca:Pcar_2581 GTPase ObgE; TIGRFAM: GTP-binding protein Obg/CgtA; small GTP- binding protein; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related YP_003502794.1 KEGG: sse:Ssed_0955 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27 YP_003502795.1 KEGG: nmc:NMC1847 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21 YP_003502796.1 KEGG: hha:Hhal_1228 ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34 YP_003502797.1 PFAM: protein of unknown function DUF37; KEGG: bcj:BCAL0425 hypothetical protein YP_003502798.1 KEGG: gbm:Gbem_4059 60 kDa inner membrane insertion protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: 60 kDa inner membrane insertion protein YP_003502799.1 KEGG: sfu:Sfum_2598 single-stranded nucleic acid binding R3H domain protein; PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein YP_003502800.1 KEGG: dma:DMR_21990 hypothetical protein YP_003502801.1 TIGRFAM: transaldolase; KEGG: gur:Gura_0705 putative translaldolase; PFAM: Transaldolase YP_003502802.1 PFAM: regulatory protein TetR; KEGG: bja:bll5689 transcriptional regulatory protein YP_003502803.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: reh:H16_B0101 short chain dehydrogenase YP_003502804.1 KEGG: cja:CJA_2910 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_003502805.1 TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: gme:Gmet_1215 DNA polymerase III, alpha subunit; SMART: phosphoesterase PHP domain protein YP_003502806.1 KEGG: ftn:FTN_0155 competence protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein YP_003502807.1 KEGG: ppd:Ppro_1833 thiamine biosynthesis protein ThiF; TIGRFAM: thiamine biosynthesis protein ThiF; PFAM: UBA/THIF-type NAD/FAD binding protein YP_003502808.1 KEGG: pst:PSPTO_0433 sulfur carrier protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein YP_003502809.1 KEGG: nam:NAMH_1049 GGDEF domain protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003502810.1 PFAM: ATPase-like, ParA/MinD; KEGG: sat:SYN_01185 iron-sulfur cluster assembly/repair protein YP_003502811.1 KEGG: sun:SUN_1269 glycogen synthase; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1 YP_003502812.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: abu:Abu_0533 integral membrane domain- containing protein YP_003502813.1 KEGG: sat:SYN_02170 cytosol aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein YP_003502814.1 KEGG: cco:CCC13826_0452 iron chelatin ABC transporter, permease protein YP_003502815.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sfu:Sfum_3313 transcriptional regulator, LysR family YP_003502816.1 TIGRFAM: tRNA 2-selenouridine synthase; PFAM: Rhodanese domain protein; KEGG: ppd:Ppro_3539 tRNA 2-selenouridine synthase; SMART: Rhodanese domain protein YP_003502817.1 KEGG: dvl:Dvul_2537 rare lipoprotein A; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein YP_003502818.1 TIGRFAM: ribonuclease PH; KEGG: ilo:IL2425 RNase PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2 YP_003502819.1 KEGG: gsu:GSU1794 HAM1 protein; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein YP_003502820.1 PFAM: penicillin-binding protein transpeptidase; KEGG: sun:SUN_0350 penicillin-binding protein 1A YP_003502821.1 KEGG: gem:GM21_2661 shikimate kinase; PFAM: shikimate kinase YP_003502822.1 TIGRFAM: 3-dehydroquinate synthase; KEGG: vsa:VSAL_I2723 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase YP_003502823.1 KEGG: sse:Ssed_1651 hypothetical protein; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat YP_003502824.1 TIGRFAM: 3-dehydroquinate dehydratase, type II; KEGG: apa:APP7_1952 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II YP_003502825.1 PFAM: peptidase M24; creatinase; KEGG: gem:GM21_2656 peptidase M24 YP_003502826.1 KEGG: mxa:MXAN_5769 translation elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor P/YeiP protein; Elongation factor KOW domain protein YP_003502827.1 KEGG: gur:Gura_1825 acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein YP_003502828.1 KEGG: pca:Pcar_2127 acetyl-CoA carboxylase/biotin carboxylase; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthetase large chain domain protein YP_003502829.1 KEGG: dal:Dalk_0133 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_3; SMART: Tetratricopeptide repeat YP_003502831.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: dol:Dole_2816 4-diphosphocytidyl-2C-methyl-D- erythritol kinase; PFAM: GHMP kinase YP_003502832.1 TIGRFAM: ribose-phosphate pyrophosphokinase; KEGG: ppd:Ppro_0743 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_003502833.1 TIGRFAM: peptidyl-tRNA hydrolase; KEGG: gem:GM21_1474 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase YP_003502834.1 TIGRFAM: V-type H(+)-translocating pyrophosphatase; KEGG: pca:Pcar_2001 membrane-bound proton- translocating pyrophosphatase; PFAM: Inorganic H pyrophosphatase YP_003502835.1 KEGG: pca:Pcar_2000 translation-associated GTPase; TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP- binding protein HSR1-related YP_003502836.1 PFAM: SH3 type 3 domain protein YP_003502837.1 KEGG: pca:Pcar_2762 molybdenum cofactor biosynthesis protein C; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region YP_003502838.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gbm:Gbem_3422 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003502839.1 TIGRFAM: NAD+ synthetase; KEGG: gbm:Gbem_3421 NAD+ synthetase; PFAM: NAD synthase YP_003502840.1 SMART: CBS domain containing protein; TIGRFAM: inosine-5'-monophosphate dehydrogenase; KEGG: sfu:Sfum_2122 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein YP_003502841.1 KEGG: gur:Gura_3123 GMP synthase; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I YP_003502842.1 KEGG: sfu:Sfum_3743 lipoprotein releasing system, transmembrane protein, LolC/E family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214 YP_003502843.1 PFAM: protein of unknown function DUF167; KEGG: cbd:CBUD_1117 hypothetical cytosolic protein YP_003502844.1 KEGG: hypothetical protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat YP_003502845.1 KEGG: abu:Abu_1393 HAD-superfamily hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003502846.1 PFAM: FAD dependent oxidoreductase; KEGG: gur:Gura_0933 amine oxidase YP_003502847.1 KEGG: dds:Ddes_0615 hypothetical protein YP_003502848.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: dds:Ddes_0616 molybdopterin oxidoreductase YP_003502850.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: msu:MS2280 quinol dehydrogenase periplasmic component YP_003502851.1 KEGG: dat:HRM2_09550 NapH YP_003502852.1 KEGG: pca:Pcar_2562 cyclic AMP receptor protein; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp YP_003502853.1 KEGG: glo:Glov_1038 hypothetical protein YP_003502854.1 PFAM: diacylglycerol kinase; KEGG: fph:Fphi_0741 diacylglycerol kinase YP_003502855.1 KEGG: gur:Gura_2601 hypothetical protein YP_003502856.1 PFAM: thioesterase superfamily protein; KEGG: dps:DP3111 hypothetical protein YP_003502857.1 SMART: AAA ATPase; TIGRFAM: DNA polymerase III, subunits gamma and tau; KEGG: geo:Geob_0378 DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein YP_003502858.1 KEGG: pca:Pcar_0759 IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR YP_003502859.1 PFAM: glycosyl transferase family 2; KEGG: bba:Bd1739 putative glycosyl transferase YP_003502860.1 TIGRFAM: tetraacyldisaccharide 4'-kinase; KEGG: gbm:Gbem_0848 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_003502863.1 PFAM: glucose-inhibited division protein A; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mca:MCA0770 putative glutamate synthase (NADPH) small subunit YP_003502864.1 KEGG: dvl:Dvul_1338 glutamine amidotransferase, class-II YP_003502865.1 PFAM: ferredoxin-dependent glutamate synthase; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; KEGG: gme:Gmet_1756 glutamate synthase (NADPH) GltB2 subunit YP_003502866.1 KEGG: sfu:Sfum_1927 hypothetical protein YP_003502867.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; KEGG: wsu:WS1340 putative two-component sensor; SMART: ATP-binding region ATPase domain protein YP_003502868.1 KEGG: saz:Sama_2693 PhzF family phenazine biosynthesis protein; TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_003502869.1 KEGG: gur:Gura_0180 alcohol dehydrogenase; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_003502870.1 PFAM: TOBE domain protein; KEGG: shm:Shewmr7_2558 molybdenum-pterin binding protein YP_003502871.1 PFAM: protein of unknown function DUF534; KEGG: oan:Oant_0867 hypothetical protein YP_003502872.1 PFAM: inner-membrane translocator; KEGG: dps:DP3101 hypothetical protein YP_003502873.1 KEGG: gsu:GSU0212 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003502874.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gbm:Gbem_0757 methyltransferase type 11 YP_003502875.1 PFAM: aminotransferase class I and II; KEGG: msu:MS1248 AvtA protein YP_003502876.1 PFAM: protein of unknown function DUF55; KEGG: mca:MCA0353 hypothetical protein YP_003502877.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: geo:Geob_0985 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_003502878.1 KEGG: gem:GM21_0378 hypothetical protein YP_003502879.1 KEGG: bba:Bd2844 hypothetical protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region YP_003502880.1 KEGG: dde:Dde_1960 lipid A export ATP- binding/permease protein MsbA; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003502881.1 KEGG: dps:DP0512 outer membrane (agglutination) protein; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: OmpA/MotB domain protein; outer membrane efflux protein YP_003502882.1 PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: ccv:CCV52592_0161 periplasmic protein YP_003502883.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: ccv:CCV52592_0162 endonuclease IV; SMART: EAL domain protein; GGDEF domain containing protein YP_003502884.1 TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: dps:DP0513 toxin secretion ATP-binding protein; SMART: AAA ATPase YP_003502885.1 KEGG: dps:DP0514 secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein YP_003502886.1 KEGG: dps:DP0515 two-component system response regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003502887.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: gur:Gura_2414 hypothetical protein YP_003502888.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit ; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; KEGG: gur:Gura_1212 electron transfer flavoprotein, alpha subunit YP_003502889.1 PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: gur:Gura_2416 electron transfer flavoprotein beta-subunit YP_003502890.1 KEGG: dat:HRM2_08540 transporter Bcr/CflA subfamily; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1 YP_003502891.1 PFAM: protein of unknown function DUF182; KEGG: shl:Shal_0645 hypothetical protein YP_003502892.1 TIGRFAM: selenium-dependent molybdenum hydroxylase system protein, YqeB family; KEGG: aha:AHA_2167 xanthine dehydrogenase accessory factor YP_003502893.1 KEGG: dps:DP3064 hypothetical protein YP_003502894.1 KEGG: dps:DP3065 hypothetical protein YP_003502895.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: dps:DP3066 4-hydroxybenzoyl-CoA reductase HcrA YP_003502896.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: dps:DP3067 4-hydroxybenzoyl-CoA reductase (HcrC) YP_003502897.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: dps:DP3068 4-hydroxybenzoyl-CoA reductase HcrB YP_003502898.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: tdn:Suden_1041 diguanylate cyclase; SMART: GGDEF domain containing protein; PAC repeat- containing protein; PAS domain containing protein YP_003502899.1 KEGG: dma:DMR_26610 Na+/H+ antiporter; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA YP_003502900.1 TIGRFAM: ectoine/hydroxyectoine ABC transporter solute-binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: pap:PSPA7_4374 ectoine/hydroxyectoine ABC transporter solute-binding protein; SMART: extracellular solute-binding protein family 3 YP_003502901.1 KEGG: mmw:Mmwyl1_2325 ectoine/hydroxyectoine ABC transporter permease protein EhuC; TIGRFAM: ectoine/hydroxyectoine ABC transporter, permease protein EhuC; polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003502902.1 KEGG: mmw:Mmwyl1_2324 ectoine/hydroxyectoine ABC transporter permease protein EhuD; TIGRFAM: ectoine/hydroxyectoine ABC transporter, permease protein EhuD; polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003502903.1 TIGRFAM: ectoine/hydroxyectoine ABC transporter, ATP-binding protein; PFAM: ABC transporter related; KEGG: psa:PST_0014 amino acid ABC transporter, ATP- binding protein; SMART: AAA ATPase YP_003502904.1 KEGG: pca:Pcar_2942 molybdopterin converting factor, large subunit YP_003502905.1 KEGG: cco:CCC13826_0722 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003502906.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: wsu:WS0415 sensor kinase of two-component regulatory system; SMART: ATP-binding region ATPase domain protein; GAF domain protein; PAS domain containing protein YP_003502907.1 PFAM: HI0933 family protein; glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dps:DP3117 hypothetical protein YP_003502908.1 PFAM: cobalbumin biosynthesis protein; KEGG: dat:HRM2_02230 CobU YP_003502909.1 TIGRFAM:nicotinate- nucleotide/dimethylbenzimidazolep hosphoribosyltransferase; KEGG: dal:Dalk_0458 nicotinate- nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_003502910.1 KEGG: dat:HRM2_45670 CobS; TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS YP_003502911.1 PFAM: aminotransferase class I and II; KEGG: dal:Dalk_0456 aminotransferase class I and II YP_003502912.1 KEGG: dal:Dalk_0457 cobalamin biosynthesis protein CobD; TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB YP_003502913.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: dat:HRM2_45640 hypothetical protein YP_003502914.1 KEGG: ppd:Ppro_3502 precorrin-2 C20- methyltransferase; TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003502915.1 KEGG: sec:SC2027 cobyric acid synthase; TIGRFAM: cobyric acid synthase CobQ; PFAM: CobB/CobQ domain protein glutamine amidotransferase; Cobyrinic acid ac-diamide synthase YP_003502916.1 TIGRFAM: siroheme synthase; KEGG: vha:VIBHAR_02359 hypothetical protein YP_003502917.1 KEGG: tau:Tola_1681 cobyrinic acid a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; Cobyrinic acid ac-diamide synthase YP_003502918.1 KEGG: vsp:VS_2662 precorrin-8X methylmutase CbiC; PFAM: Precorrin-8X methylmutase CbiC/CobH YP_003502919.1 PFAM: Precorrin-6x reductase CbiJ/CobK; KEGG: kpn:KPN_03191 cobalt-precorrin-6x reductase YP_003502920.1 TIGRFAM: precorrin-3B C17-methyltransferase; KEGG: vsp:VS_2667 precorrin-3B methylase CobJ; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003502921.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: pca:Pcar_0472 cobalamin biosynthesis protein CbiG YP_003502922.1 TIGRFAM: precorrin-4 C11-methyltransferase; KEGG: gur:Gura_0039 precorrin-4 C11- methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003502923.1 KEGG: glo:Glov_3646 precorrin-6y C5,15- methyltransferase (decarboxylating), CbiE subunit; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003502924.1 KEGG: scl:sce0239 cobalt-precorrin-6A synthase; TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein YP_003502925.1 KEGG: dat:HRM2_07680 CbiK1; PFAM: anaerobic cobalt chelatase YP_003502926.1 KEGG: sfu:Sfum_1827 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003502927.1 PFAM: ABC-2 type transporter; KEGG: dal:Dalk_3535 ABC-2 type transporter YP_003502928.1 PFAM: transport system permease protein; KEGG: sfu:Sfum_2134 transport system permease protein YP_003502929.1 KEGG: bov:BOV_1302 iron compound ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003502930.1 PFAM: periplasmic binding protein; KEGG: dde:Dde_3106 iron compound ABC transporter, periplasmic iron compount-binding protein, putative YP_003502931.1 KEGG: dde:Dde_2837 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003502932.1 TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; PAS fold domain protein; KEGG: gur:Gura_1729 signal transduction histidine kinase; SMART: PAS domain containing protein YP_003502933.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: gme:Gmet_2418 response regulator receiver (CheY-like) modulated CheB methylesterase; SMART: response regulator receiver YP_003502934.1 PFAM: CheD family protein; KEGG: gur:Gura_2983 CheD, stimulates methylation of MCP protein YP_003502935.1 PFAM: MCP methyltransferase CheR-type; KEGG: gme:Gmet_2420 MCP methyltransferase, CheR- type; SMART: MCP methyltransferase CheR-type YP_003502936.1 KEGG: glo:Glov_1734 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_003502937.1 KEGG: dvm:DvMF_1209 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer YP_003502938.1 KEGG: geo:Geob_2260 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein YP_003502939.1 KEGG: dma:DMR_19040 chemotaxis protein CheY; PFAM: response regulator receiver; SMART: response regulator receiver YP_003502940.1 KEGG: geo:Geob_2258 anti-sigma-factor antagonist YP_003502941.1 KEGG: dar:Daro_1140 chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_003502942.1 KEGG: gsu:GSU0598 sigma-54 dependent DNA-binding response regulator; PFAM: response regulator receiver; SMART: response regulator receiver YP_003502943.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; KEGG: gsu:GSU1249 sensory box histidine kinase; SMART: ATP-binding region ATPase domain protein; response regulator receiver YP_003502944.1 KEGG: ppd:Ppro_0378 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase YP_003502945.1 KEGG: maq:Maqu_2184 alkylphosphonate utilization operon protein PhnA; TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein YP_003502946.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: pca:Pcar_0614 phospho-2-dehydro-3- deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_003502947.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: pca:Pcar_3091 cytochrome d ubiquinol oxidase subunit I YP_003502948.1 KEGG: gme:Gmet_1929 cytochrome bd ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II YP_003502949.1 KEGG: sde:Sde_2296 response regulator receiver domain-containing protein; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003502950.1 KEGG: dat:HRM2_03410 ColS; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003502951.1 KEGG: glo:Glov_1295 hypothetical protein YP_003502952.1 KEGG: glo:Glov_1291 hypothetical protein YP_003502953.1 KEGG: esa:ESA_01919 hypothetical protein; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; Twin-arginine translocation pathway, signal sequence YP_003502954.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_4208 putative oxidoreductase iron- sulfur subunit YP_003502955.1 KEGG: glo:Glov_1295 hypothetical protein YP_003502956.1 KEGG: glo:Glov_1291 hypothetical protein YP_003502957.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; Twin-arginine translocation pathway, signal sequence; KEGG: apj:APJL_1705 anaerobic dimethyl sulfoxide reductase chain A precursor YP_003502958.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_4208 putative oxidoreductase iron- sulfur subunit YP_003502959.1 KEGG: glo:Glov_1295 hypothetical protein YP_003502960.1 KEGG: glo:Glov_1291 hypothetical protein YP_003502961.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; Twin-arginine translocation pathway, signal sequence; KEGG: apj:APJL_1705 anaerobic dimethyl sulfoxide reductase chain A precursor YP_003502962.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_4208 putative oxidoreductase iron- sulfur subunit YP_003502963.1 KEGG: glo:Glov_1295 hypothetical protein YP_003502964.1 KEGG: glo:Glov_1291 hypothetical protein YP_003502965.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; Twin-arginine translocation pathway, signal sequence; KEGG: elf:LF82_0497 anaerobic dimethyl sulfoxide reductase chain A YP_003502966.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_4208 putative oxidoreductase iron- sulfur subunit YP_003502968.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tdn:Suden_1493 4Fe-4S ferredoxin, iron-sulfur binding YP_003502969.1 PFAM: Paraquat-inducible protein A; KEGG: vpa:VP2017 paraquat-inducible protein A YP_003502970.1 PFAM: Paraquat-inducible protein A; KEGG: mms:mma_1053 paraquat-inducible protein A YP_003502971.1 PFAM: Mammalian cell entry related domain protein; KEGG: swd:Swoo_2127 hypothetical protein YP_003502973.1 KEGG: gme:Gmet_1510 4-oxalocrotonate tautomerase; TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase YP_003502974.1 KEGG: ppr:PBPRB1560 ribokinase; TIGRFAM: ribokinase; PFAM: PfkB domain protein; Phosphomethylpyrimidine kinase type-1 YP_003502975.1 KEGG: oan:Oant_4373 regulatory protein LacI; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003502976.1 PFAM: RbsD or FucU transport; KEGG: dze:Dd1591_4175 RbsD or FucU transport YP_003502977.1 KEGG: tau:Tola_0572 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003502978.1 PFAM: inner-membrane translocator; KEGG: vha:VIBHAR_06144 ribose ABC transporter permease protein YP_003502979.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vha:VIBHAR_06143 D-ribose transporter subunit RbsB YP_003502980.1 PFAM: carbon starvation protein CstA; KEGG: afw:Anae109_4235 carbon starvation protein CstA YP_003502981.1 KEGG: sbm:Shew185_0932 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003502982.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: sat:SYN_00607 ferredoxin-NADP(+) reductase subunit alpha YP_003502983.1 KEGG: sat:SYN_00606 glutamate synthase (NADPH); TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003502984.1 KEGG: hch:HCH_04875 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer YP_003502985.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_2837 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003502986.1 PFAM: NADPH-dependent FMN reductase; KEGG: pca:Pcar_1104 putative NADPH-dependent FMN reductase YP_003502987.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: afw:Anae109_2754 4Fe-4S ferredoxin iron- sulfur binding domain-containing protein YP_003502988.1 PFAM: regulatory protein TetR; KEGG: dat:HRM2_15800 putative HTH-type transcriptional regulator YP_003502989.1 KEGG: dat:HRM2_15810 RND efflux transporter (HlyD family secretion protein); TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003502990.1 KEGG: dat:HRM2_15820 RND efflux pump (AcrB/AcrD/AcrF family protein); TIGRFAM: transporter, hydrophobe/amphiphile efflux- 1 (HAE1) family; PFAM: acriflavin resistance protein YP_003502991.1 KEGG: dat:HRM2_15830 RND efflux transporter, outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein YP_003502992.1 KEGG: geo:Geob_1650 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_003502993.1 PFAM: protein of unknown function DUF541; KEGG: noc:Noc_0087 hypothetical protein YP_003502994.1 KEGG: hch:HCH_00750 chromosome segregation ATPase YP_003502995.1 KEGG: dol:Dole_0797 hypothetical protein YP_003502996.1 KEGG: cju:C8J_1268 enterochelin transport system permease protein YP_003502997.1 KEGG: mmw:Mmwyl1_1906 two component, sigma54 specific, Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase YP_003502998.1 KEGG: swp:swp_4353 ATP-binding region, ATPase-like protein; PFAM: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; SMART: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3 YP_003502999.1 KEGG: sfu:Sfum_2550 hydroxylamine oxidase YP_003503000.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: gur:Gura_0801 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003503001.1 PFAM: Phosphoglycerate mutase; KEGG: dat:HRM2_04170 phosphoglycerate/bisphosphoglycerate mutase family protein YP_003503002.1 PFAM: protein of unknown function DUF262; KEGG: gbm:Gbem_2969 protein of unknown function DUF262 YP_003503004.1 PFAM: Integrase catalytic region; KEGG: gur:Gura_0559 integrase catalytic subunit YP_003503005.1 KEGG: gur:Gura_0558 IstB ATP binding domain- containing protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003503006.1 KEGG: vei:Veis_3738 ATPase central domain- containing protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_003503007.1 KEGG: afr:AFE_3195 Tn5468, orf5 YP_003503008.1 KEGG: afe:Lferr_0143 hypothetical protein YP_003503009.1 KEGG: spc:Sputcn32_3945 transposon Tn7 transposition protein TnsC YP_003503010.1 KEGG: afr:AFE_1202 Tn5468, transposase protein B YP_003503011.1 PFAM: TnsA endonuclease; KEGG: abm:ABSDF3566 putative transposon Tn7-like transposition protein A (TnsA-like) YP_003503012.1 KEGG: pca:Pcar_2933 glucosamine--fructose-6- phosphate aminotransferase, isomerizing; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II YP_003503013.1 KEGG: nam:NAMH_1067 S4 domain protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003503014.1 PFAM: SurA domain; KEGG: dat:HRM2_28180 PpiD2 YP_003503015.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: glo:Glov_0699 PpiC-type peptidyl-prolyl cis- trans isomerase YP_003503016.1 TIGRFAM: transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase domain protein; transcription factor CarD; TRCF domain protein; helicase domain protein; KEGG: gem:GM21_0197 transcription-repair coupling factor; SMART: DEAD-like helicase ; helicase domain protein YP_003503017.1 KEGG: dvl:Dvul_1275 phosphoheptose isomerase YP_003503018.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: gbm:Gbem_3549 phospho-2-dehydro-3- deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_003503019.1 PFAM: protein of unknown function DUF81; KEGG: sme:SM_b20104 hypothetical protein YP_003503020.1 KEGG: sat:SYN_00844 molybdate-binding protein domain; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Prophage CP4-57 regulatory YP_003503021.1 KEGG: dat:HRM2_08630 Gap1; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_003503022.1 KEGG: protein kinase domain containing protein YP_003503024.1 PFAM: Integrase catalytic region; KEGG: sat:SYN_01900 transposase YP_003503025.1 KEGG: sat:SYN_01899 IstB-like ATP binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003503028.1 PFAM: Integrase catalytic region; KEGG: psa:PST_3409 ISPsy14, transposase YP_003503029.1 KEGG: maq:Maqu_2981 IstB ATP binding domain- containing protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003503031.1 KEGG: ATPase, AAA family protein ; K10755 replication factor C subunit 2/4 YP_003503032.1 KEGG: pnu:Pnuc_2067 phage integrase family protein YP_003503033.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: ccv:CCV52592_0505 general stress protein 14 (GSP14) YP_003503034.1 KEGG: rpa:RPA2688 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein YP_003503035.1 TIGRFAM: hemerythrin-like metal-binding protein; KEGG: gem:GM21_1984 hemerythrin-like metal-binding protein YP_003503036.1 KEGG: dol:Dole_0548 FmdB family regulatory protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB YP_003503037.1 KEGG: slo:Shew_1756 hydrogenase expression/formation protein HypE; TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003503039.1 KEGG: abu:Abu_0121 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase YP_003503040.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: acp:A2cp1_0675 type IV pilus assembly protein PilM YP_003503042.1 TIGRFAM: lipid-A-disaccharide synthase; KEGG: sat:SYN_01565 lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; protein of unknown function DUF354 YP_003503043.1 PFAM: flagellar hook-length control protein; KEGG: hypothetical protein YP_003503044.1 PFAM: flagellar hook capping protein; KEGG: dma:DMR_13740 flagellar basal-body rod modification protein FlgD YP_003503045.1 KEGG: nam:NAMH_1447 flagellar hook protein FlgE; TIGRFAM: fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; flagellar basal body rod protein YP_003503046.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: wsu:WS2090 motility protein A-flagellar motor component YP_003503047.1 PFAM: OmpA/MotB domain protein; KEGG: nam:NAMH_1161 OmpA/MotB YP_003503048.1 PFAM: flagellar basal body-associated protein FliL; KEGG: nam:NAMH_0976 flagellar basal body-associated protein FliL YP_003503049.1 PFAM: surface presentation of antigens (SPOA) protein; KEGG: dal:Dalk_1009 flagellar motor switch protein FliN YP_003503051.1 KEGG: glo:Glov_3290 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein YP_003503052.1 KEGG: sat:SYN_02834 flagellar biosynthetic protein; TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3 YP_003503053.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: sml:Smlt4692 putative polysaccharide deacetylase family protein YP_003503054.1 KEGG: gme:Gmet_1443 flavin reductase-like, FMN- binding YP_003503055.1 KEGG: abu:Abu_0465 quinohemoprotein amine dehydrogenase, 60 kDa subunit YP_003503056.1 KEGG: geo:Geob_1109 phospholipase D/transphosphatidylase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase YP_003503057.1 KEGG: gme:Gmet_0465 ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related YP_003503058.1 PFAM: phosphoesterase DHHA1; KEGG: nis:NIS_1127 hypothetical protein YP_003503059.1 PFAM: protein of unknown function UPF0047; KEGG: mfa:Mfla_2363 hypothetical protein YP_003503060.1 PFAM: NikR nickel binding; CopG domain protein DNA- binding domain protein; KEGG: dvm:DvMF_1320 nickel responsive regulator YP_003503061.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: sfu:Sfum_2752 cobalamin (vitamin B12) biosynthesis CbiM protein YP_003503062.1 KEGG: sfu:Sfum_1102 cobalt ABC transporter, inner membrane subunit CbiQ; TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein YP_003503063.1 TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: gsu:GSU1281 cobalt ABC transporter, ATP- binding protein; SMART: AAA ATPase YP_003503064.1 KEGG: aeh:Mlg_0085 hypothetical protein YP_003503065.1 PFAM: protein of unknown function DUF208; KEGG: dal:Dalk_0393 protein of unknown function DUF208 YP_003503066.1 KEGG: glo:Glov_1213 tryptophan synthase subunit beta; TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003503067.1 KEGG: ccv:CCV52592_0509 DJ-1 family protein; TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein YP_003503068.1 KEGG: hypothetical protein YP_003503071.1 TIGRFAM: glycyl-tRNA synthetase, alpha subunit; KEGG: gur:Gura_3673 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase alpha subunit YP_003503072.1 TIGRFAM: argininosuccinate synthase; KEGG: ara:Arad_4374 argininosuccinate synthase; PFAM: argininosuccinate synthase YP_003503073.1 TIGRFAM: ornithine carbamoyltransferase; KEGG: gur:Gura_0227 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region YP_003503074.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; KEGG: dat:HRM2_27570 ArgD; PFAM: aminotransferase class-III YP_003503076.1 KEGG: cja:CJA_2609 hypothetical protein YP_003503077.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: dvm:DvMF_0365 lipid A biosynthesis acyltransferase YP_003503078.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: geo:Geob_2105 three-deoxy-D-manno-octulosonic- acid transferase domain protein YP_003503079.1 PFAM: protein of unknown function DUF374; KEGG: lip:LI0870 hypothetical protein YP_003503080.1 PFAM: 20S proteasome A and B subunits; KEGG: bmj:BMULJ_00145 ATP-dependent HslUV protease subunit HslV YP_003503081.1 TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; KEGG: pca:Pcar_2412 ATP-dependent protease ATP- binding subunit; SMART: AAA ATPase YP_003503082.1 KEGG: dat:HRM2_31460 hypothetical protein YP_003503083.1 KEGG: sat:SYN_03116 hypothetical protein YP_003503084.1 PFAM: major facilitator superfamily MFS_1; KEGG: tgr:Tgr7_1469 major facilitator superfamily MFS_1 YP_003503086.1 PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1474 cytochrome c-type biogenesis protein CcmC YP_003503087.1 PFAM: cytochrome c-type biogenesis protein CcmB; ABC-2 type transporter; KEGG: mxa:MXAN_3257 heme exporter protein CcmB YP_003503088.1 KEGG: dal:Dalk_2887 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003503089.1 PFAM: cytochrome c assembly protein; KEGG: mxa:MXAN_3253 cytochrome c-type biogenesis protein CcmF YP_003503090.1 KEGG: dvm:DvMF_3133 cytochrome c-type biogenesis protein CcmE YP_003503091.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: pla:Plav_0455 cytochrome c biogenesis protein transmembrane region YP_003503092.1 PFAM: Type II secretion system F domain; KEGG: ilo:IL0371 type II secretory pathway YP_003503093.1 KEGG: nis:NIS_1563 general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase YP_003503094.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pca:Pcar_2988 putative small-conductance mechanosensitive channel YP_003503095.1 KEGG: geo:Geob_2401 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon- binding domain protein YP_003503096.1 PFAM: Peptidase M23; KEGG: dal:Dalk_0953 peptidase M23 YP_003503097.1 KEGG: glo:Glov_3157 tetratricopeptide TPR_2 repeat protein YP_003503098.1 KEGG: sde:Sde_1352 hypothetical protein YP_003503099.1 KEGG: tcx:Tcr_0471 ATP-binding region, ATPase-like; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003503100.1 KEGG: tcx:Tcr_0470 two component fis family transcriptional regulator; PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver YP_003503104.1 PFAM: type II and III secretion system protein; KEGG: dps:DP0113 type II protein secretion protein YP_003503105.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: hypothetical protein YP_003503106.1 PFAM: major facilitator superfamily MFS_1; KEGG: atc:AGR_C_4286 hypothetical protein YP_003503107.1 KEGG: tmz:Tmz1t_1809 hemerythrin-like metal-binding protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein YP_003503108.1 KEGG: wsu:WS0710 hypothetical protein YP_003503109.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; KEGG: dal:Dalk_1108 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein YP_003503111.1 KEGG: wsu:WS1120 putative transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003503112.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dal:Dalk_5095 DegT/DnrJ/EryC1/StrS aminotransferase YP_003503113.1 KEGG: gsu:GSU2871 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein YP_003503114.1 KEGG: geo:Geob_3639 ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33 YP_003503115.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: dat:HRM2_36380 SecE YP_003503116.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; KEGG: gme:Gmet_0614 transcription antitermination protein NusG; SMART: NGN domain protein; KOW domain protein YP_003503117.1 TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; KEGG: bba:Bd2991 50S ribosomal protein L11; SMART: ribosomal protein L11 YP_003503118.1 KEGG: gur:Gura_1058 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1 YP_003503119.1 PFAM: ribosomal protein L10; KEGG: pca:Pcar_0692 50S ribosomal protein L10 YP_003503120.1 KEGG: dat:HRM2_36330 RplL; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12 YP_003503121.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit; KEGG: gme:Gmet_0619 DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase Rpb2 domain 7; RNA polymerase beta subunit; DNA- directed RNA polymerase, beta subunit, external 1 domain YP_003503122.1 TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 4; KEGG: mxa:MXAN_3078 DNA-directed RNA polymerase, beta' subunit; SMART: RNA polymerase I subunit A domain protein YP_003503123.1 KEGG: afr:AFE_0322 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23 YP_003503124.1 KEGG: wsu:WS0469 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7 YP_003503125.1 KEGG: gsu:GSU2860 elongation factor G; TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV YP_003503126.1 KEGG: gsu:GSU2871 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein YP_003503127.1 KEGG: ank:AnaeK_1933 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10 YP_003503128.1 KEGG: ppd:Ppro_0680 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3 YP_003503129.1 PFAM: ribosomal protein L4/L1e; KEGG: sfu:Sfum_1556 ribosomal protein L4/L1e YP_003503130.1 PFAM: Ribosomal protein L25/L23; KEGG: gsu:GSU2855 50S ribosomal protein L23 YP_003503131.1 KEGG: glo:Glov_1349 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2 YP_003503132.1 KEGG: dde:Dde_2253 SSU ribosomal protein S19P; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15 YP_003503133.1 KEGG: pca:Pcar_0706 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17 YP_003503134.1 TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; KEGG: ara:Arad_1979 ribosomal protein S3; SMART: KH domain protein YP_003503135.1 KEGG: dno:DNO_1268 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L10e/L16 YP_003503136.1 KEGG: gem:GM21_3320 ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29 YP_003503137.1 KEGG: gme:Gmet_0635 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17 YP_003503138.1 KEGG: dde:Dde_2247 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e YP_003503139.1 TIGRFAM: ribosomal protein L24; KEGG: dat:HRM2_36150 RplX YP_003503140.1 PFAM: ribosomal protein L5; KEGG: mmw:Mmwyl1_4264 ribosomal protein L5 YP_003503141.1 PFAM: ribosomal protein S14; KEGG: afw:Anae109_1924 ribosomal protein S14 YP_003503142.1 PFAM: ribosomal protein S8; KEGG: dol:Dole_0722 ribosomal protein S8 YP_003503143.1 KEGG: gem:GM21_3313 ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain YP_003503144.1 KEGG: gsu:GSU2841 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E YP_003503145.1 KEGG: sfu:Sfum_1572 ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: Ribosomal protein S5 ; ribosomal protein S5 domain protein YP_003503146.1 KEGG: dvm:DvMF_0098 50S ribosomal protein L15; TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15 YP_003503147.1 KEGG: dat:HRM2_36060 SecY; TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein YP_003503148.1 KEGG: abu:Abu_0779 adenylate kinase; TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain protein YP_003503149.1 KEGG: sat:SYN_01596 methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24 YP_003503150.1 KEGG: dal:Dalk_1893 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein YP_003503151.1 KEGG: pca:Pcar_0724 ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36 YP_003503152.1 KEGG: gme:Gmet_0650 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13 YP_003503153.1 KEGG: dvu:DVU1327 30S ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11 YP_003503154.1 TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: glo:Glov_1372 30S ribosomal protein S4; SMART: RNA-binding S4 domain protein YP_003503155.1 TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase alpha subunit domain protein; RNA polymerase dimerisation; KEGG: afw:Anae109_1938 DNA-directed RNA polymerase subunit alpha; SMART: RNA polymerase RpoA/D/Rpb3-type YP_003503156.1 KEGG: aeh:Mlg_0484 50S ribosomal protein L17P; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17 YP_003503157.1 PFAM: PhoP regulatory network protein YrbL; KEGG: abu:Abu_1812 hypothetical protein YP_003503158.1 KEGG: har:HEAR1743 hypothetical protein YP_003503159.1 SMART: GGDEF domain containing protein; TIGRFAM: diguanylate cyclase; KEGG: cps:CPS_0452 sensory box protein; PFAM: GGDEF domain containing protein YP_003503160.1 PFAM: Late competence development protein ComFB; KEGG: dma:DMR_13030 hypothetical protein YP_003503161.1 KEGG: gur:Gura_0007 NAD(P)H-dependent glycerol-3- phosphate dehydrogenase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_003503162.1 SMART: DNA-directed DNA polymerase; Helix-hairpin- helix domain protein class 2; 5'-3' exonuclease; TIGRFAM: DNA polymerase I; KEGG: sfu:Sfum_1612 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain YP_003503163.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mxa:MXAN_3705 GAF domain/GGDEF domain- containing protein; SMART: GGDEF domain containing protein YP_003503164.1 TIGRFAM: histidinol dehydrogenase; KEGG: gsu:GSU3100 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase YP_003503165.1 PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: hiq:CGSHiGG_07760 positive regulator of sigma E YP_003503166.1 PFAM: protein of unknown function DUF342; KEGG: dde:Dde_1534 polymerase YP_003503169.1 TIGRFAM: dihydroxy-acid dehydratase; KEGG: geo:Geob_1510 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_003503170.1 KEGG: sfu:Sfum_3024 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region YP_003503171.1 KEGG: gme:Gmet_1261 acetolactate synthase 3 regulatory subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein YP_003503172.1 TIGRFAM: ketol-acid reductoisomerase; KEGG: gsu:GSU1909 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain protein; acetohydroxy acid isomeroreductase YP_003503173.1 KEGG: geo:Geob_1193 hypothetical protein YP_003503175.1 KEGG: gbm:Gbem_2815 GTP-binding proten HflX; TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related YP_003503176.1 PFAM: hydrogenase formation HypD protein; KEGG: dps:DP0579 hydrogenase accessory protein HypD YP_003503177.1 KEGG: glo:Glov_3064 hydrogenase assembly chaperone HypC/HupF; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC) YP_003503178.1 PFAM: Rhomboid family protein; KEGG: dal:Dalk_3454 rhomboid family protein YP_003503179.1 KEGG: nam:NAMH_1292 hypothetical protein; TIGRFAM: selenium metabolism protein YedF; PFAM: SirA family protein YP_003503180.1 KEGG: wsu:WS2107 hypothetical protein YP_003503181.1 KEGG: abu:Abu_2243 UDP GlcNAc dehydratase/reductase PseB, putative; TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase; PFAM: polysaccharide biosynthesis protein CapD; 3- beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; NAD- dependent epimerase/dehydratase YP_003503182.1 KEGG: abu:Abu_2244 DegT/DnrJ/EryC1/StrS aminotransferase; TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4- aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003503183.1 KEGG: glo:Glov_2825 cytochrome c family protein YP_003503184.1 KEGG: afw:Anae109_2492 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase YP_003503185.1 KEGG: afw:Anae109_2491 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003503186.1 KEGG: gur:Gura_2910 ferroxidase; PFAM: Ferritin Dps family protein YP_003503187.1 PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1957; KEGG: ank:AnaeK_1135 domain of unknown function DUF1957 YP_003503188.1 KEGG: noc:Noc_0098 hypothetical protein YP_003503189.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; KEGG: geo:Geob_1010 glycogen/starch synthase, ADP- glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1 YP_003503190.1 KEGG: gme:Gmet_3176 galactose-1-phosphate uridyl transferase, class I; TIGRFAM: galactose-1-phosphate uridylyltransferase YP_003503191.1 KEGG: sun:SUN_1273 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1925; Domain of unknown function DUF1926 YP_003503192.1 PFAM: glycoside hydrolase family 57; KEGG: gsu:GSU3255 hypothetical protein YP_003503193.1 PFAM: Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; transferase hexapeptide repeat containing protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: sun:SUN_1275 mannose-1-phosphate guanylyltransferase YP_003503194.1 KEGG: gur:Gura_0854 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003503195.1 TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: sat:SYN_01763 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase YP_003503196.1 TIGRFAM: lytic murein transglycosylase B; KEGG: aeh:Mlg_0174 lytic murein transglycosylase B YP_003503197.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; KEGG: gme:Gmet_1218 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein YP_003503198.1 TIGRFAM: acetylglutamate kinase; KEGG: sfu:Sfum_0064 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003503199.1 KEGG: dps:DP0275 protein-L-isoaspartate(D- aspartate) O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase YP_003503200.1 KEGG: gme:Gmet_1421 sigma 28 (flagella/sporulation); TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein YP_003503201.1 PFAM: peptidase M24; creatinase; KEGG: pca:Pcar_2614 Xaa-Pro aminopeptidase YP_003503202.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: rpf:Rpic12D_0583 acylneuraminate cytidylyltransferase YP_003503203.1 PFAM: LmbE family protein; KEGG: cla:Cla_1324 LmbE-like protein YP_003503204.1 KEGG: lpn:lpg0752 N-acetylneuraminic acid synthetase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein YP_003503205.1 PFAM: flagellin domain protein; KEGG: hch:HCH_04820 flagellin-like protein YP_003503206.1 PFAM: flagellar protein FlaG protein; KEGG: cvi:CV_3877 flagellin protein YP_003503207.1 PFAM: protein of unknown function DUF115; KEGG: nam:NAMH_1610 motility accessory factor YP_003503208.1 PFAM: WbqC-like family protein; KEGG: mmw:Mmwyl1_0831 WbqC-like family protein YP_003503209.1 PFAM: amidohydrolase 2; KEGG: dat:HRM2_10900 putative metal-dependent hydrolase YP_003503210.1 PFAM: Methyltransferase type 11; methyltransferase small; Methyltransferase type 12; KEGG: similar to AGAP010537-PA YP_003503211.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vvy:VV0304 TDP-fucosamine acetyltransferase YP_003503212.1 PFAM: Radical SAM domain protein; KEGG: dma:DMR_24580 hypothetical protein YP_003503213.1 TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; KEGG: glo:Glov_2489 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; PFAM: arginine biosynthesis protein ArgJ YP_003503214.1 TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: gur:Gura_1051 N-acetyl-gamma-glutamyl- phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_003503215.1 KEGG: gur:Gura_4245 glutamate-1-semialdehyde aminotransferase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III YP_003503216.1 KEGG: dal:Dalk_0136 hypothetical protein YP_003503217.1 KEGG: dma:DMR_42140 hypothetical protein YP_003503218.1 KEGG: gur:Gura_4247 hypothetical protein YP_003503219.1 KEGG: ppd:Ppro_1500 ATP synthase F0, A subunit; TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit YP_003503220.1 KEGG: dma:DMR_42170 ATP synthase subunit C; TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit YP_003503221.1 KEGG: ppr:PBPRA1496 hypothetical trimethylamine N- oxide reductase,cytochrome c-type subunit YP_003503222.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; KEGG: wri:WRi_000820 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_003503223.1 TIGRFAM: phosphatidylserine decarboxylase related protein; KEGG: bcs:BCAN_A0447 phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related YP_003503224.1 TIGRFAM: CDP-diacylglycerol/serine O- phosphatidyltransferase; KEGG: glo:Glov_2499 CDP-diacylglycerol/serine O- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_003503225.1 KEGG: gur:Gura_3715 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain YP_003503226.1 KEGG: gem:GM21_0365 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003503227.1 PFAM: protein of unknown function DUF28; KEGG: gsu:GSU1074 hypothetical protein YP_003503228.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: mpt:Mpe_A0482 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_003503229.1 TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; KEGG: sdn:Sden_1884 Holliday junction DNA helicase RuvA; SMART: Helix-hairpin-helix DNA-binding class 1 YP_003503230.1 KEGG: pca:Pcar_1250 putative ATP-binding component of a transport system; PFAM: ABC transporter related; SMART: AAA ATPase YP_003503231.1 PFAM: purine or other phosphorylase family 1; KEGG: tgr:Tgr7_1751 methylthioadenosine phosphorylase YP_003503232.1 TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: gme:Gmet_0414 UDP-N- acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein YP_003503235.1 KEGG: dat:HRM2_11340 hypothetical protein YP_003503237.1 KEGG: glo:Glov_1274 general secretion pathway protein K YP_003503238.1 KEGG: pap:PSPA7_2035 general secretion pathway protein J YP_003503239.1 KEGG: pin:Ping_3118 type IV pilin YP_003503240.1 KEGG: sbl:Sbal_3828 methylation site containing protein YP_003503241.1 KEGG: aeh:Mlg_2391 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G YP_003503242.1 PFAM: Abortive infection protein; KEGG: tgr:Tgr7_0273 abortive infection protein YP_003503243.1 KEGG: dal:Dalk_5148 PDZ/DHR/GLGF domain-containing protein YP_003503244.1 KEGG: dat:HRM2_11310 GspD1; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein YP_003503245.1 KEGG: cti:RALTA_A2997 general secretory pathway E protein, ATPase component; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_003503246.1 PFAM: Type II secretion system F domain; KEGG: sdn:Sden_0123 general secretion pathway protein F YP_003503247.1 KEGG: gsu:GSU1266 GTP-binding protein LepA; TIGRFAM: GTP-binding protein LepA; small GTP- binding protein; PFAM: GTP-binding protein LepA domain protein; elongation factor G domain protein; elongation factor Tu domain 2 protein; protein synthesis factor GTP-binding YP_003503248.1 TIGRFAM: signal peptidase I; KEGG: gsu:GSU1267 signal peptidase I; PFAM: Peptidase S24, S26A and S26B, conserved region YP_003503249.1 TIGRFAM: uridylate kinase; KEGG: ank:AnaeK_0291 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003503250.1 KEGG: gme:Gmet_1253 ribosome recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor YP_003503251.1 TIGRFAM: undecaprenyl diphosphate synthase; KEGG: gur:Gura_3729 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_003503252.1 PFAM: phosphatidate cytidylyltransferase; KEGG: sat:SYN_00917 phosphatidate cytidylyltransferase YP_003503253.1 TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: gsu:GSU1915 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein YP_003503254.1 KEGG: gsu:GSU1914 membrane-associated zinc metalloprotease, putative; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50 YP_003503255.1 PFAM: flagellin domain protein; KEGG: cja:CJA_1919 flagellin YP_003503257.1 KEGG: ebr:ECB_01718 exonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_003503258.1 PFAM: nitroreductase; KEGG: ppd:Ppro_0326 nitroreductase YP_003503259.1 PFAM: NUDIX hydrolase; KEGG: dat:HRM2_17780 putative nucleotide diphosphate hydrolase (MutT family hydrolase) YP_003503260.1 PFAM: type IV pilus assembly PilZ YP_003503263.1 KEGG: cvi:CV_1358 methyl-accepting chemotaxis protein IV; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003503264.1 PFAM: protein of unknown function DUF493; KEGG: hap:HAPS_1237 hypothetical protein YP_003503265.1 PFAM: protein of unknown function DUF107; KEGG: ade:Adeh_2369 nodulation efficiency protein NfeD YP_003503266.1 TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; KEGG: gbm:Gbem_2778 tRNA (guanine-N(7)-)- methyltransferase; PFAM: putative methyltransferase YP_003503267.1 KEGG: dat:HRM2_12300 RpmB; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28 YP_003503269.1 KEGG: dps:DP2993 methyl-accepting chemotaxis protein (McpB); PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_003503270.1 KEGG: dma:DMR_06990 putative sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003503271.1 PFAM: Auxin Efflux Carrier; KEGG: pca:Pcar_1956 permease YP_003503272.1 PFAM: glycosyl transferase family 39; KEGG: gur:Gura_3694 glycosyl transferase family protein YP_003503274.1 KEGG: geo:Geob_3446 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1 YP_003503275.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: RelA/SpoT family protein; KEGG: glo:Glov_2284 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain YP_003503276.1 KEGG: gbm:Gbem_0343 exodeoxyribonuclease V, alpha subunit; TIGRFAM: exodeoxyribonuclease V, alpha subunit YP_003503277.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; KEGG: sat:SYN_02552 exodeoxyribonuclease V beta chain; PFAM: UvrD/REP helicase YP_003503278.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; KEGG: gur:Gura_0582 exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit YP_003503279.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; KEGG: gur:Gura_0050 response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein YP_003503281.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc1002 hypothetical protein YP_003503283.1 PFAM: integrase family protein; KEGG: lpc:LPC_0199 putative lambdoid prophage Rac integrase YP_003503286.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pay:PAU_00956 putative phage regulator YP_003503288.1 KEGG: ypi:YpsIP31758_2245 hypothetical protein YP_003503289.1 TIGRFAM: mobile mystery protein A; PFAM: helix-turn-helix domain protein; KEGG: geo:Geob_1642 transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein YP_003503290.1 KEGG: ilo:IL1820 metal-binding domain-containing protein YP_003503293.1 KEGG: swd:Swoo_0133 hypothetical protein YP_003503294.1 PFAM: PilT protein domain protein; KEGG: dal:Dalk_1528 PilT protein domain protein YP_003503295.1 KEGG: dal:Dalk_1529 SpoVT/AbrB domain protein YP_003503296.1 PFAM: HipA domain protein; KEGG: sun:SUN_1608 hypothetical protein YP_003503297.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: abu:Abu_1483 putative transcriptional regulator YP_003503298.1 KEGG: sat:SYN_01836 MreB-like ATPase involved in cell division YP_003503300.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pfs:PFLU2849 e14 prophage; putative phage repressor YP_003503301.1 KEGG: sbp:Sbal223_0969 hypothetical protein YP_003503302.1 PFAM: transposase mutator type; MULE transposase, conserved domain; KEGG: son:SO_0708 transposase mutator family protein YP_003503303.1 KEGG: hypothetical protein YP_003503304.1 KEGG: tdn:Suden_0776 hypothetical protein YP_003503305.1 KEGG: sat:SYN_01859 hypothetical protein YP_003503306.1 TIGRFAM: type IV conjugative transfer system protein TraL; KEGG: ppd:Ppro_0258 hypothetical protein YP_003503307.1 KEGG: sat:SYN_01861 sex pilus assembly/synthesis protein YP_003503308.1 KEGG: sat:SYN_01862 hypothetical protein YP_003503309.1 PFAM: TraB pilus assembly family protein; KEGG: sat:SYN_01863 pilus assembly protein YP_003503310.1 PFAM: Type IV conjugative transfer system protein TraV YP_003503311.1 KEGG: glo:Glov_0316 sex pilus assembly protein YP_003503313.1 KEGG: sat:SYN_01868 putative cytoplasmic protein YP_003503314.1 PFAM: TraU family protein; KEGG: sat:SYN_01869 conjugal DNA transfer protein YP_003503315.1 KEGG: ppd:Ppro_0197 glutaredoxin 2 YP_003503318.1 KEGG: sat:SYN_01875 DNA transfer and F pilus assembly protein YP_003503319.1 PFAM: TraH family protein; KEGG: sat:SYN_01874 pilus assembly protein YP_003503320.1 KEGG: dde:Dde_2497 hypothetical protein YP_003503321.1 KEGG: dde:Dde_2866 hypothetical protein YP_003503322.1 KEGG: reh:H16_B2389 putative exonuclease; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_003503323.1 KEGG: cjr:CJE0674 transcriptional regulator, putative YP_003503325.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: gem:GM21_0790 phosphoadenosine phosphosulfate reductase YP_003503326.1 KEGG: gem:GM21_0791 hypothetical protein YP_003503327.1 KEGG: gem:GM21_0792 hypothetical protein YP_003503328.1 KEGG: gem:GM21_0793 ATP-dependent Lon-type protease- like protein YP_003503330.1 KEGG: sml:Smlt3075 hypothetical protein YP_003503333.1 KEGG: dat:HRM2_19390 hypothetical protein YP_003503335.1 KEGG: bph:Bphy_7770 hypothetical protein YP_003503336.1 KEGG: see:SNSL254_A4376 hypothetical protein YP_003503337.1 KEGG: sat:SYN_01892 putative cytoplasmic protein YP_003503338.1 KEGG: sat:SYN_01891 hypothetical protein YP_003503339.1 KEGG: glo:Glov_0307 hypothetical protein YP_003503340.1 KEGG: glo:Glov_0315 hypothetical protein YP_003503341.1 TIGRFAM: type-F conjugative transfer system pilin assembly protein TrbC; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; KEGG: ppd:Ppro_3771 hypothetical protein YP_003503342.1 KEGG: glo:Glov_0308 type IV secretory protease YP_003503343.1 KEGG: sat:SYN_01867 hypothetical protein; PFAM: proteinase inhibitor I2 Kunitz metazoa; SMART: Worm-specific repeat type 1 YP_003503344.1 PFAM: membrane-bound metal-dependent hydrolase; metal-dependent phosphohydrolase HD sub domain; KEGG: sat:SYN_01887 metal dependent phosphohydrolases YP_003503345.1 KEGG: sat:SYN_01886 DNA transfer in the process of conjugation and F pilus assembly protein YP_003503346.1 PFAM: plasmid maintenance system killer; KEGG: gur:Gura_0413 plasmid maintenance system killer YP_003503347.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: pst:PSPTO_0214 virulence-associated protein, putative; SMART: helix-turn-helix domain protein YP_003503348.1 KEGG: sat:SYN_01885 putative cytoplasmic protein YP_003503350.1 KEGG: nam:NAMH_1363 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n YP_003503351.1 KEGG: cja:CJA_0589 putative Ig domain family; PFAM: Ig family protein; SMART: Dystroglycan-type cadherin domain protein YP_003503352.1 KEGG: sdn:Sden_2807 hypothetical protein YP_003503353.1 KEGG: ppd:Ppro_0262 ATPase YP_003503354.1 PFAM: Domain of unknown function DUF1814; KEGG: gsu:GSU1368 hypothetical protein YP_003503355.1 KEGG: gsu:GSU1367 hypothetical protein YP_003503356.1 KEGG: eba:ebA5970 antitoxin of toxin-antitoxin stability system; TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172 YP_003503357.1 KEGG: lhk:LHK_01762 plasmid stabilization system; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system YP_003503358.1 PFAM: integrase family protein; KEGG: lhk:LHK_00908 phage integrase YP_003503359.1 KEGG: gme:Gmet_2277 hypothetical protein YP_003503361.1 KEGG: wsu:WS0941 hypothetical protein YP_003503367.1 KEGG: dma:DMR_30060 hypothetical protein YP_003503369.1 PFAM: protein of unknown function DUF1232; KEGG: swd:Swoo_0383 hypothetical protein YP_003503370.1 KEGG: pap:PSPA7_6053 hypothetical protein YP_003503371.1 KEGG: pap:PSPA7_6054 hypothetical protein YP_003503372.1 PFAM: GTP-binding protein HSR1-related; KEGG: pap:PSPA7_6055 hypothetical protein YP_003503373.1 PFAM: transposase IS3/IS911 family protein; KEGG: lpp:lpp0199 hypothetical protein YP_003503374.1 PFAM: protein of unknown function DUF218; KEGG: bph:Bphy_3013 hypothetical protein YP_003503375.1 PFAM: formyl transferase domain protein; KEGG: bph:Bphy_3012 formyl transferase domain- containing protein YP_003503376.1 TIGRFAM: pseudaminic acid synthase; KEGG: abu:Abu_2246 N-acetylneuraminic acid synthetase; PFAM: N-acetylneuraminic acid synthase domain YP_003503377.1 PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2298 transposase IS4 family protein YP_003503378.1 KEGG: gur:Gura_4388 helix-turn-helix domain- containing protein; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein YP_003503379.1 KEGG: gur:Gura_4387 hypothetical protein YP_003503380.1 PFAM: transposase mutator type; MULE transposase, conserved domain; KEGG: son:SO_0708 transposase mutator family protein YP_003503381.1 KEGG: noc:Noc_0565 hypothetical protein YP_003503382.1 KEGG: rbo:A1I_03895 ATPase YP_003503384.1 PFAM: integrase family protein; KEGG: lpc:LPC_0199 putative lambdoid prophage Rac integrase YP_003503385.1 KEGG: gme:Gmet_2277 hypothetical protein YP_003503386.1 KEGG: dps:DP0418 hypothetical protein YP_003503387.1 PFAM: Integrase catalytic region; KEGG: psa:PST_3409 ISPsy14, transposase YP_003503388.1 KEGG: maq:Maqu_2981 IstB ATP binding domain- containing protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003503389.1 KEGG: cjd:JJD26997_0694 hypothetical protein YP_003503392.1 PFAM: transposase IS3/IS911 family protein; KEGG: dde:Dde_3341 hypothetical protein YP_003503394.1 TIGRFAM: addiction module antidote protein; KEGG: pay:PAU_01619 hypothetical protein YP_003503395.1 KEGG: dol:Dole_2241 addiction module killer protein; TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891 YP_003503396.1 KEGG: abu:Abu_1714 ATPase, putative YP_003503397.1 PFAM: transposase IS3/IS911 family protein; KEGG: dde:Dde_3362 transposase (class V) YP_003503398.1 PFAM: Integrase catalytic region; KEGG: pca:Pcar_0539 putative transposase YP_003503399.1 PFAM: transposase mutator type; MULE transposase, conserved domain; KEGG: son:SO_0708 transposase mutator family protein YP_003503400.1 KEGG: sun:SUN_1091 hypothetical protein YP_003503401.1 KEGG: dvl:Dvul_2775 ATPase central domain- containing protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_003503403.1 KEGG: sea:SeAg_A0051 relaxase YP_003503404.1 KEGG: mmb:Mmol_0231 mobilisation protein YP_003503407.1 PFAM: transposase mutator type; MULE transposase, conserved domain; KEGG: asa:ASA_3009 IS256 family transposase YP_003503408.1 KEGG: abu:Abu_1483 putative transcriptional regulator YP_003503409.1 KEGG: sat:SYN_01836 MreB-like ATPase involved in cell division YP_003503411.1 PFAM: transposase mutator type; MULE transposase, conserved domain; KEGG: son:SO_0708 transposase mutator family protein YP_003503412.1 PFAM: Integrase catalytic region; KEGG: glo:Glov_3714 integrase catalytic region YP_003503413.1 PFAM: transposase IS3/IS911 family protein; KEGG: bvi:Bcep1808_7228 transposase IS3/IS911 family protein YP_003503414.1 KEGG: shl:Shal_1756 hypothetical protein YP_003503415.1 PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2298 transposase IS4 family protein YP_003503416.1 PFAM: Integrase catalytic region; KEGG: sat:SYN_01900 transposase YP_003503417.1 KEGG: sat:SYN_01899 IstB-like ATP binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003503418.1 KEGG: glo:Glov_1295 hypothetical protein YP_003503419.1 KEGG: glo:Glov_1291 hypothetical protein YP_003503420.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; KEGG: dvm:DvMF_1612 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family YP_003503421.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: asu:Asuc_1522 dimethylsulfoxide reductase chain B YP_003503422.1 KEGG: glo:Glov_3057 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003503424.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: vha:VIBHAR_01582 chaperone protein TorD YP_003503425.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_4208 putative oxidoreductase iron- sulfur subunit YP_003503426.1 PFAM: Radical SAM domain protein; KEGG: ccv:CCV52592_2101 radical SAM family protein YP_003503427.1 KEGG: vpa:VP1031 chaperone protein TorD YP_003503428.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dps:DP2621 sec-independent protein translocase protein TatA YP_003503429.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dar:Daro_2610 4Fe-4S ferredoxin, iron-sulfur binding YP_003503430.1 PFAM: transposase mutator type; MULE transposase, conserved domain; KEGG: glo:Glov_3450 transposase mutator type YP_003503431.1 PFAM: Integrase catalytic region; transposase IS3/IS911 family protein; KEGG: wsu:WS1957 putative transposase YP_003503432.1 KEGG: GJ20951 gene product from transcript GJ20951- RA; PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype YP_003503435.1 KEGG: bph:Bphy_7770 hypothetical protein YP_003503436.1 KEGG: sat:SYN_01885 putative cytoplasmic protein YP_003503437.1 KEGG: nam:NAMH_1363 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n YP_003503439.1 KEGG: sfu:Sfum_2862 hypothetical protein YP_003503440.1 KEGG: dol:Dole_3138 hypothetical protein YP_003503441.1 PFAM: AAA-4 family protein; KEGG: hso:HS_0100 transcriptional regulator YP_003503442.1 PFAM: integrase family protein; KEGG: ppd:Ppro_1126 phage integrase family protein YP_003503444.1 KEGG: nis:NIS_1322 hypothetical protein YP_003503445.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: vpa:VP1778 DNA-binding transcriptional repressor PuuR YP_003503446.1 KEGG: psb:Psyr_0097 hypothetical protein YP_003503447.1 PFAM: protein of unknown function DUF87; KEGG: pfs:PFLU0171 hypothetical protein YP_003503448.1 KEGG: psb:Psyr_0099 hypothetical protein YP_003503449.1 PFAM: NERD domain protein; KEGG: shn:Shewana3_0647 NERD domain-containing protein YP_003503451.1 PFAM: Integrase catalytic region; KEGG: sat:SYN_01900 transposase YP_003503452.1 KEGG: sat:SYN_01899 IstB-like ATP binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003503454.1 PFAM: Integrase catalytic region; KEGG: gur:Gura_0559 integrase catalytic subunit YP_003503455.1 KEGG: gur:Gura_0558 IstB ATP binding domain- containing protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003503456.1 KEGG: maq:Maqu_2981 IstB ATP binding domain- containing protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003503457.1 KEGG: dde:Dde_2866 hypothetical protein YP_003503458.1 KEGG: elf:LF82_p696 cold shock protein YP_003503462.1 KEGG: glo:Glov_3693 hypothetical protein YP_003503463.1 KEGG: gsu:GSU2116 hypothetical protein YP_003503464.1 PFAM: transposase mutator type; MULE transposase, conserved domain; KEGG: son:SO_0708 transposase mutator family protein YP_003503465.1 KEGG: dol:Dole_0909 TPR repeat-containing protein YP_003503466.1 KEGG: bvi:Bcep1808_6840 hypothetical protein YP_003503467.1 PFAM: Resolvase domain; KEGG: glo:Glov_2327 resolvase domain YP_003503469.1 KEGG: similar to Phosphopantothenoylcysteine synthetase YP_003503470.1 KEGG: abb:ABBFA_000218 hypothetical protein YP_003503471.1 KEGG: wsu:WS2113 hypothetical protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003503472.1 KEGG: glo:Glov_2590 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Cache type 2 domain protein; SMART: ATP-binding region ATPase domain protein YP_003503473.1 KEGG: gur:Gura_1544 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: response regulator receiver; regulatory protein LuxR YP_003503474.1 KEGG: gur:Gura_1543 putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003503475.1 KEGG: mes:Meso_3676 hypothetical protein YP_003503476.1 PFAM: regulatory protein TetR; KEGG: abb:ABBFA_000225 bacterial regulatory protein, TetR family protein YP_003503477.1 PFAM: outer membrane efflux protein; KEGG: pca:Pcar_3003 outer membrane efflux protein YP_003503478.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: tcx:Tcr_0056 secretion protein HlyD YP_003503479.1 PFAM: acriflavin resistance protein; KEGG: dde:Dde_0670 AcrB/AcrD/AcrF family transporter YP_003503480.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: dvl:Dvul_1441 regulatory protein, ArsR YP_003503482.1 PFAM: protein of unknown function DUF752; KEGG: wsu:WS0458 hypothetical protein YP_003503483.1 KEGG: gsu:GSU1827 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase YP_003503484.1 KEGG: gem:GM21_3782 hypothetical protein YP_003503485.1 PFAM: Radical SAM domain protein; KEGG: gem:GM21_0860 radical SAM domain protein YP_003503486.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; KEGG: ppr:PBPRB0486 hypothetical protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein YP_003503487.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; KEGG: sse:Ssed_1934 hypothetical protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein YP_003503488.1 TIGRFAM: enolase; KEGG: glo:Glov_2019 phosphopyruvate hydratase; PFAM: enolase YP_003503489.1 PFAM: peptidase M29 aminopeptidase II; KEGG: gur:Gura_1909 peptidase M29, aminopeptidase II YP_003503490.1 KEGG: dde:Dde_0099 asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type YP_003503491.1 KEGG: bpr:GBP346_A1559 putative transposon gamma- delta 80.3 kDa protein (transposon rotein TnpX) YP_003503494.1 PFAM: transposase mutator type; MULE transposase, conserved domain; KEGG: son:SO_0708 transposase mutator family protein YP_003503495.1 KEGG: bph:Bphy_7770 hypothetical protein YP_003503497.1 KEGG: pin:Ping_2942 hypothetical protein YP_003503498.1 KEGG: rme:Rmet_1263 transposase/IS protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003503499.1 PFAM: Integrase catalytic region; KEGG: rme:Rmet_1264 integrase catalytic subunit YP_003503500.1 KEGG: sbl:Sbal_0629 hypothetical protein YP_003503501.1 KEGG: vfi:VF_A0516 putative lipoprotein YP_003503502.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mei:Msip34_2845 transcriptional regulator, XRE family YP_003503503.1 KEGG: afr:AFE_0499 hypothetical protein YP_003503504.1 PFAM: transposase mutator type; MULE transposase, conserved domain; KEGG: son:SO_0708 transposase mutator family protein YP_003503505.1 KEGG: gur:Gura_0558 IstB ATP binding domain- containing protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003503506.1 PFAM: Integrase catalytic region; KEGG: gur:Gura_0559 integrase catalytic subunit YP_003503507.1 KEGG: bph:Bphy_7770 hypothetical protein YP_003503509.1 KEGG: tdn:Suden_0987 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003503510.1 KEGG: dol:Dole_2711 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003503511.1 KEGG: bav:BAV2490 MarR-family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003503512.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: psa:PST_2228 hypothetical protein YP_003503513.1 KEGG: aha:AHA_2666 GGDEF domain-containing protein; PFAM: NMT1/THI5 like domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003503514.1 KEGG: pha:PSHAa0374 sensor histidine kinase protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003503515.1 KEGG: glo:Glov_0050 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003503516.1 PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2298 transposase IS4 family protein YP_003503517.1 KEGG: dat:HRM2_00920 putative outer membrane efflux protein (OprM-family protein); TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein YP_003503518.1 KEGG: pca:Pcar_0668 Acr family membrane-fusion protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003503519.1 PFAM: acriflavin resistance protein; KEGG: pca:Pcar_0669 AcrB/AcrD/AcrF family cation efflux protein YP_003503520.1 KEGG: ade:Adeh_2907 hypothetical protein YP_003503521.1 KEGG: gme:Gmet_0100 cytochrome c family protein YP_003503522.1 KEGG: ccv:CCV52592_0014 hypothetical protein YP_003503523.1 KEGG: mca:MCA0432 putative lipoprotein YP_003503524.1 PFAM: NHL repeat containing protein; KEGG: mca:MCA0433 NHL domain/cytochrome c family protein YP_003503525.1 KEGG: gbm:Gbem_1124 cytochrome c family protein; TIGRFAM: cytochrome C family protein; PFAM: doubled CXXCH domain protein YP_003503527.1 KEGG: gsu:GSU0616 cytochrome c family protein; TIGRFAM: cytochrome C family protein; PFAM: doubled CXXCH domain protein YP_003503528.1 KEGG: afw:Anae109_3110 hypothetical protein YP_003503529.1 KEGG: gsu:GSU2739 hypothetical protein YP_003503530.1 KEGG: acp:A2cp1_3539 hypothetical protein YP_003503531.1 KEGG: gem:GM21_3540 domain of unknown function DUF1927 YP_003503533.1 KEGG: gme:Gmet_2899 cytochrome c family protein; TIGRFAM: cytochrome C family protein; PFAM: doubled CXXCH domain protein YP_003503534.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: ddcA; Orn/DAP/Arg decarboxylase 2 domain- containing protein YP_003503535.1 SMART: GGDEF domain containing protein; TIGRFAM: ammonium transporter; diguanylate cyclase; KEGG: tcx:Tcr_2151 ammonium transporter; PFAM: ammonium transporter; GGDEF domain containing protein YP_003503537.1 KEGG: dvm:DvMF_1510 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_003503538.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; KEGG: sfu:Sfum_0711 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_003503539.1 KEGG: sfu:Sfum_0712 D-alanine--D-alanine ligase domain protein; PFAM: D-alanine--D-alanine ligase domain protein YP_003503540.1 PFAM: protein of unknown function DUF201; KEGG: dol:Dole_1891 GCN5-related N- acetyltransferase YP_003503541.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dol:Dole_1891 GCN5-related N- acetyltransferase YP_003503542.1 PFAM: ABC-2 type transporter; KEGG: dal:Dalk_2027 ABC-2 type transporter YP_003503543.1 PFAM: ABC-2 type transporter; KEGG: dal:Dalk_2026 ABC-2 type transporter YP_003503544.1 KEGG: dal:Dalk_2025 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003503545.1 PFAM: secretion protein HlyD family protein; KEGG: geo:Geob_1779 secretion protein HlyD family protein YP_003503546.1 PFAM: Transcriptional regulator TetR ; regulatory protein TetR; KEGG: dvu:DVU0057 TetR family transcriptional regulator YP_003503547.1 SMART: GGDEF domain containing protein; PAS domain containing protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; KEGG: dde:Dde_0867 diguanylate cyclase with PAS/PAC sensor; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein YP_003503548.1 PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2298 transposase IS4 family protein YP_003503549.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0791 hypothetical protein YP_003503550.1 KEGG: bph:Bphy_7770 hypothetical protein YP_003503551.1 SMART: GGDEF domain containing protein; TIGRFAM: diguanylate cyclase; KEGG: sde:Sde_3939 response regulator receiver domain-containing protein; PFAM: GGDEF domain containing protein; Diverse 7TM receptor transmembrane region; Diverse 7TM receptor extracellular region 2 YP_003503552.1 PFAM: protein of unknown function DUF155; KEGG: hch:HCH_06302 hypothetical protein YP_003503553.1 PFAM: ABC-2 type transporter; KEGG: dal:Dalk_3535 ABC-2 type transporter YP_003503554.1 KEGG: ppd:Ppro_1263 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003503555.1 KEGG: spe:Spro_3426 ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003503556.1 PFAM: transport system permease protein; KEGG: pol:Bpro_4778 transport system permease protein YP_003503557.1 PFAM: periplasmic binding protein; KEGG: scl:sce8314 putative periplasmic substrate- binding protein YP_003503558.1 PFAM: protein of unknown function DUF1008; KEGG: spl:Spea_3326 hypothetical protein YP_003503559.1 PFAM: Radical SAM domain protein; KEGG: vvu:VV2_1615 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_003503560.1 KEGG: kpe:KPK_5329 protoporphyrinogen oxidase YP_003503561.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: ecs:ECs2792 hypothetical protein YP_003503562.1 KEGG: dde:Dde_3395 hypothetical protein YP_003503563.1 TIGRFAM: TonB family protein; KEGG: hch:HCH_06977 periplasmic protein TonB, links inner and outer membranes YP_003503564.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dat:HRM2_00050 ExbD YP_003503565.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pca:Pcar_1505 MotA/TolQ/ExbB proton channel family protein YP_003503566.1 KEGG: abu:Abu_1092 hypothetical protein YP_003503567.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; KEGG: dal:Dalk_0572 PAS/PAC sensor hybrid histidine kinase; SMART: PAS domain containing protein YP_003503568.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: protein-P-II uridylyltransferase; KEGG: gem:GM21_2333 UTP-GlnB uridylyltransferase, GlnD; PFAM: GlnD PII-uridylyltransferase; metal-dependent phosphohydrolase HD sub domain; amino acid-binding ACT domain protein YP_003503569.1 PFAM: flagellar basal body-associated protein FliL YP_003503570.1 TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; KEGG: gsu:GSU2568 MiaB-like tRNA modifying enzyme; SMART: Elongator protein 3/MiaB/NifB YP_003503571.1 KEGG: vco:VC0395_0588 putative NADH oxidase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein YP_003503572.1 TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; KEGG: gur:Gura_2868 phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase YP_003503573.1 PFAM: helix-turn-helix HxlR type; KEGG: gsu:GSU0178 hypothetical protein YP_003503574.1 KEGG: amc:MADE_01969 alcohol dehydrogenase, zinc- containing; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_003503575.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; histidine kinase HAMP region domain protein; KEGG: glo:Glov_1021 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_003503576.1 KEGG: azo:azo0736 nitrogen regulation protein NR(II); PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003503577.1 KEGG: dat:HRM2_10830 MrcA; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase YP_003503578.1 TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; type III restriction protein res subunit; KEGG: pca:Pcar_0099 excinuclease ABC subunit B; SMART: DEAD-like helicase ; helicase domain protein YP_003503579.1 KEGG: nam:NAMH_1325 selenocysteine-specific translation elongation factor; TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 3 YP_003503580.1 TIGRFAM: L-seryl-tRNA selenium transferase; KEGG: abu:Abu_1524 selenocysteine synthase; PFAM: Pyridoxal phosphate-dependent transferase YP_003503581.1 KEGG: dds:Ddes_0821 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_003503582.1 TIGRFAM: amidohydrolase; KEGG: kpe:KPK_2239 amidohydrolase family protein; PFAM: peptidase M20 YP_003503583.1 KEGG: oan:Oant_3669 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein YP_003503585.1 SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; TIGRFAM: DNA topoisomerase I; KEGG: mxa:MXAN_3002 putative DNA protecting protein DprA/DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein YP_003503586.1 TIGRFAM: gid protein; KEGG: gme:Gmet_0893 tRNA (uracil-5-)- methyltransferase Gid; PFAM: glucose-inhibited division protein A YP_003503587.1 PFAM: protein of unknown function DUF1460; KEGG: ypy:YPK_1951 hypothetical protein YP_003503588.1 PFAM: protein of unknown function DUF523; KEGG: ppf:Pput_5065 hypothetical protein YP_003503589.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sat:SYN_02151 integrase/recombinase YP_003503590.1 KEGG: wsu:WS0293 carbonic anyhydrase; PFAM: carbonic anhydrase YP_003503591.1 TIGRFAM: phosphoenolpyruvate carboxykinase (ATP); KEGG: gur:Gura_0871 phosphoenolpyruvate carboxykinase; PFAM: phosphoenolpyruvate carboxykinase (ATP) YP_003503592.1 KEGG: gbm:Gbem_2452 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease YP_003503593.1 TIGRFAM: alanyl-tRNA synthetase; KEGG: gme:Gmet_0201 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD YP_003503594.1 PFAM: NUDIX hydrolase; KEGG: gsu:GSU3375 MutT/NUDIX family protein YP_003503595.1 KEGG: dal:Dalk_0295 CheC domain protein YP_003503596.1 PFAM: NAD-glutamate dehydrogenase; KEGG: csa:Csal_1340 glutamate dehydrogenase (NAD) YP_003503597.1 PFAM: peptidase M16 domain protein; KEGG: bba:Bd3869 zinc protease YP_003503598.1 KEGG: hypothetical protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat YP_003503599.1 KEGG: gsu:GSU0720 desulfoferrodoxin ferrous iron- binding domain-containing protein; PFAM: Desulfoferrodoxin ferrous iron-binding region YP_003503600.1 KEGG: nis:NIS_0549 5-methyltetrahydrofolate-- homocysteine methyltransferase; TIGRFAM: methionine synthase; PFAM: homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; dihydropteroate synthase DHPS; Vitamin B12 dependent methionine synthase activation region YP_003503602.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pca:Pcar_1402 GNAT family acetyltransferase YP_003503603.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; KEGG: dps:DP2159 L-lysine 2,3-aminomutase; PFAM: Radical SAM domain protein YP_003503604.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DP0873 hypothetical protein YP_003503605.1 KEGG: nis:NIS_0533 oligopeptidase A; PFAM: peptidase M3A and M3B thimet/oligopeptidase F YP_003503606.1 KEGG: dar:Daro_1294 cyclic nucleotide-binding: regulatory protein, Crp; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding YP_003503607.1 TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4- diphosphate synthase; KEGG: dal:Dalk_5105 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate synthase; PFAM: IspG family protein YP_003503608.1 KEGG: mxa:MXAN_6499 phosphomannomutase/phosphoglucomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II YP_003503609.1 KEGG: cvi:CV_0472 two-component response regulator YP_003503610.1 KEGG: scl:sce0859 hypothetical protein YP_003503611.1 KEGG: gsu:GSU0139 hypothetical protein YP_003503612.1 KEGG: slo:Shew_3148 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003503613.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dat:HRM2_28020 signal transduction family protein (GGDEF domain protein); SMART: GGDEF domain containing protein YP_003503614.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dal:Dalk_4312 H+transporting two-sector ATPase B/B' subunit YP_003503615.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: glo:Glov_3174 H+transporting two-sector ATPase B/B' subunit YP_003503616.1 KEGG: scl:sce9362 H(+)-transporting two-sector ATPase; TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit YP_003503617.1 TIGRFAM: ATP synthase F1, alpha subunit; KEGG: gsu:GSU0111 F0F1 ATP synthase subunit alpha; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; HerA-ATP synthase, barrel domain; H+transporting two-sector ATPase alpha/beta subunit domain protein YP_003503618.1 KEGG: dvl:Dvul_2194 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit YP_003503619.1 SMART: AAA ATPase; TIGRFAM: ATP synthase F1, beta subunit; KEGG: glo:Glov_3170 F0F1 ATP synthase subunit beta; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein YP_003503620.1 KEGG: dvm:DvMF_2832 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit YP_003503622.1 PFAM: glycosyl transferase group 1; KEGG: dvu:DVU1061 glycosyl transferase, group 1 family protein YP_003503623.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vsp:VS_II0834 putative threonine efflux protein YP_003503624.1 KEGG: vvy:VVA0893 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003503625.1 KEGG: gem:GM21_3500 methyltransferase small YP_003503626.1 PFAM: (Uracil-5)-methyltransferase; KEGG: geo:Geob_2786 RNA methyltransferase, TrmA family YP_003503627.1 PFAM: Extracellular ligand-binding receptor; KEGG: sat:SYN_00789 ABC-type branched-chain amino acid transport systems, periplasmic component YP_003503628.1 PFAM: inner-membrane translocator; KEGG: dat:HRM2_02780 LivH1 YP_003503629.1 PFAM: inner-membrane translocator; KEGG: dal:Dalk_4386 inner-membrane translocator YP_003503630.1 KEGG: dal:Dalk_4385 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003503631.1 KEGG: dal:Dalk_4384 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003503632.1 PFAM: YibE/F family protein; KEGG: dat:HRM2_01870 uncharacterized conserved multi-transmembrane protein YP_003503633.1 KEGG: dma:DMR_08520 alkaline phosphatase precursor; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase YP_003503634.1 TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; KEGG: csa:Csal_0252 deoxyguanosinetriphosphate triphosphohydrolase-like protein; SMART: metal-dependent phosphohydrolase HD region YP_003503635.1 PFAM: heat shock protein Hsp90; ATP-binding region ATPase domain protein; KEGG: gem:GM21_1803 heat shock protein HSP90 YP_003503636.1 PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: pca:Pcar_1454 RNA-binding protein YP_003503637.1 PFAM: protein of unknown function DUF339; KEGG: hypothetical protein YP_003503638.1 KEGG: abu:Abu_0455 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein YP_003503639.1 PFAM: protein of unknown function DUF534; KEGG: bcs:BCAN_A2100 hypothetical protein YP_003503642.1 PFAM: OmpA/MotB domain protein; OmpA domain protein transmembrane region-containing protein; Thrombospondin type 3 repeat; OmpF family protein; KEGG: gsu:GSU0360 OmpA domain-containing protein YP_003503643.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pag:PLES_00661 putative phosphatase YP_003503644.1 KEGG: dol:Dole_1250 hypothetical protein YP_003503645.1 KEGG: rfr:Rfer_0891 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003503646.1 PFAM: Rubrerythrin; KEGG: dde:Dde_1222 rubrerythrin YP_003503647.1 KEGG: tcx:Tcr_2182 hypothetical protein YP_003503648.1 SMART: helix-turn-helix domain protein; KEGG: tcx:Tcr_2183 XRE family transcriptional regulator YP_003503649.1 KEGG: gur:Gura_0773 TonB family protein; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein YP_003503650.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hsm:HSM_1101 TonB system transport protein ExbD type-2 YP_003503651.1 KEGG: glo:Glov_3670 TonB-system energizer ExbB; TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel YP_003503652.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: dds:Ddes_0993 TonB-dependent receptor YP_003503653.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dds:Ddes_0992 methyltransferase type 11 YP_003503654.1 PFAM: periplasmic binding protein; KEGG: dds:Ddes_0991 periplasmic binding protein YP_003503655.1 PFAM: transport system permease protein; KEGG: dds:Ddes_0990 transport system permease protein YP_003503656.1 KEGG: dds:Ddes_0989 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003503657.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: gur:Gura_0350 phosphonate ABC transporter, periplasmic phosphonate-binding protein YP_003503658.1 KEGG: gur:Gura_4191 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003503660.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; Twin-arginine translocation pathway, signal sequence; KEGG: geo:Geob_1352 molybdopterin oxidoreductase YP_003503661.1 KEGG: geo:Geob_1351 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003503662.1 KEGG: geo:Geob_3499 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase YP_003503663.1 KEGG: vfi:VF_A0049 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003503665.1 PFAM: permease; KEGG: vfi:VF_A0050 transporter YP_003503666.1 KEGG: dol:Dole_3125 putative sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase YP_003503667.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dal:Dalk_4443 succinate dehydrogenase YP_003503668.1 KEGG: nis:NIS_0010 succinate dehydrogenase/fumarate reductase, iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin YP_003503669.1 KEGG: gbm:Gbem_3372 hypothetical protein YP_003503670.1 KEGG: gbm:Gbem_3373 cytochrome c family protein YP_003503671.1 KEGG: gbm:Gbem_3374 hypothetical protein YP_003503672.1 KEGG: gem:GM21_0426 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_003503673.1 SMART: helix-turn-helix domain protein; KEGG: ret:RHE_PE00434 Cro/CI family transcriptional regulator YP_003503674.1 KEGG: gbm:Gbem_4043 cytochrome c3 YP_003503675.1 KEGG: cff:CFF8240_0440 nitrous-oxide reductase; PFAM: cytochrome c oxidase subunit II YP_003503676.1 KEGG: wsu:WS0918 hypothetical protein YP_003503677.1 SMART: Parallel beta-helix repeat; KEGG: cff:CFF8240_0442 nitrous oxidase accessory protein YP_003503678.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: wsu:WS0920 iron-sulfur protein YP_003503679.1 KEGG: cff:CFF8240_0444 hypothetical protein YP_003503680.1 KEGG: cco:CCC13826_1724 hypothetical protein YP_003503681.1 TIGRFAM: ferredoxin-type protein, NapH/MauN family; KEGG: sun:SUN_2173 NapH/MauN family ferredoxin-type protein YP_003503682.1 KEGG: wsu:WS0924 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003503683.1 KEGG: tdn:Suden_1313 hypothetical protein YP_003503684.1 KEGG: nis:NIS_1780 ABC transporter, permease YP_003503685.1 KEGG: dde:Dde_1175 RNA-binding region RNP-1; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein YP_003503686.1 KEGG: cha:CHAB381_0626 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003503687.1 KEGG: similar to GA12617-PA; TIGRFAM: conserved hypothetical protein; PFAM: Conserved hypothetical CHP02185 integral membrane family protein YP_003503688.1 PFAM: cobalt transport protein; KEGG: ppr:PBPRA2241 putative ABC transporter, membrane-spanning permease YP_003503689.1 KEGG: hha:Hhal_0379 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003503690.1 KEGG: dde:Dde_1602 ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003503691.1 KEGG: pmr:PMI2604 siderophore ABC transporter, ATP- binding/permease protein; PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase YP_003503692.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ypi:YpsIP31758_0681 TonB-dependent receptor YP_003503693.1 KEGG: dds:Ddes_0430 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003503694.1 KEGG: pha:PSHAa2704 hypothetical protein YP_003503695.1 PFAM: TonB-dependent receptor plug; KEGG: pca:Pcar_1947 hypothetical protein YP_003503696.1 KEGG: dde:Dde_0445 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase YP_003503697.1 KEGG: abu:Abu_1852 hypothetical protein YP_003503698.1 KEGG: dvl:Dvul_0847 hypothetical protein YP_003503699.1 KEGG: dal:Dalk_3524 hypothetical protein YP_003503700.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dat:HRM2_00070 TolQ3 YP_003503701.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dat:HRM2_00060 TolQ2 YP_003503702.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pha:PSHAb0523 putative TonB system-dependent transport protein YP_003503703.1 KEGG: dps:DP2971 TonB protein; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein YP_003503704.1 KEGG: dal:Dalk_3601 TPR repeat-containing protein YP_003503705.1 PFAM: peptidase M16 domain protein; KEGG: swp:swp_4956 probable zinc protease YP_003503706.1 PFAM: extracellular solute-binding protein family 5; KEGG: maq:Maqu_1538 extracellular solute-binding protein YP_003503707.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vcj:VCD_000727 oligopeptide transport system permease protein OppB YP_003503708.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_3304 ABC transporter permease YP_003503709.1 KEGG: csa:Csal_3002 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003503710.1 KEGG: hha:Hhal_2268 heat shock protein DnaJ domain- containing protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein YP_003503711.1 KEGG: gem:GM21_0928 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003503712.1 KEGG: dat:HRM2_02200 hypothetical protein YP_003503713.1 KEGG: dal:Dalk_3690 glycoside hydrolase family 13 domain protein YP_003503714.1 KEGG: dat:HRM2_02180 hypothetical 5-AMP-activated protein kinase, beta-1 subunit (AMPK beta-1 chain) (AMPKb) YP_003503715.1 KEGG: dat:HRM2_02190 predicted RNA polymerase ECF- type sigma factor(extracytoplasmic function); TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein YP_003503716.1 KEGG: rlt:Rleg2_1388 hypothetical protein YP_003503717.1 PFAM: dienelactone hydrolase; KEGG: hch:HCH_02826 dienelactone hydrolase YP_003503718.1 KEGG: dds:Ddes_0989 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003503719.1 PFAM: transport system permease protein; KEGG: dds:Ddes_0990 transport system permease protein YP_003503720.1 PFAM: periplasmic binding protein; KEGG: dds:Ddes_0991 periplasmic binding protein YP_003503721.1 PFAM: Methyltransferase type 11; KEGG: dds:Ddes_0992 methyltransferase type 11 YP_003503722.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dds:Ddes_0993 TonB-dependent receptor YP_003503723.1 KEGG: pca:Pcar_2562 cyclic AMP receptor protein; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp YP_003503724.1 PFAM: transposase IS200-family protein; KEGG: she:Shewmr4_2336 transposase IS200-family protein YP_003503725.1 PFAM: transposase IS3/IS911 family protein; KEGG: dde:Dde_3341 hypothetical protein YP_003503726.1 KEGG: protease m1 zinc metalloprotease YP_003503727.1 KEGG: dal:Dalk_3926 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer YP_003503728.1 KEGG: glo:Glov_0569 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003503729.1 KEGG: dol:Dole_2876 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003503730.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; KEGG: sat:SYN_02383 phosphoenolpyruvate synthase YP_003503732.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: vei:Veis_2839 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003503733.1 KEGG: gur:Gura_3334 hypothetical protein YP_003503736.1 PFAM: UbiA prenyltransferase; KEGG: dde:Dde_1827 protoheme IX farnesyltransferase, putative YP_003503737.1 KEGG: dde:Dde_1826 cytochrome c oxidase, subunit II, putative; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I YP_003503738.1 TIGRFAM: caa(3)-type oxidase, subunit IV; KEGG: dde:Dde_1825 Caa(3)-type oxidase, subunit IV YP_003503739.1 PFAM: cytochrome c oxidase subunit III; KEGG: dde:Dde_1824 cytochrome c oxidase, subunit III YP_003503740.1 TIGRFAM: cytochrome c oxidase, subunit I; KEGG: dvm:DvMF_0536 cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_003503741.1 KEGG: dde:Dde_1822 uncharacterized protein SCO1/SenC/PrrC YP_003503742.1 PFAM: cytochrome c class I; KEGG: dvm:DvMF_0538 cytochrome c class I YP_003503743.1 PFAM: protein of unknown function UPF0153; KEGG: gme:Gmet_2609 hypothetical protein YP_003503744.1 KEGG: glo:Glov_1117 integral membrane sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003503745.1 KEGG: spe:Spro_1508 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003503746.1 KEGG: dde:Dde_0300 hypothetical protein YP_003503748.1 KEGG: aha:AHA_2458 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003503749.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: rfr:Rfer_0891 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region YP_003503750.1 KEGG: glutamyl-tRNA synthetase family protein ; K01885 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_003503751.1 TIGRFAM: glutaminyl-tRNA synthetase; KEGG: dvm:DvMF_1485 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain YP_003503752.1 PFAM: branched-chain amino acid transport; KEGG: atc:AGR_C_2002 hypothetical protein YP_003503753.1 PFAM: AzlC family protein; KEGG: gbm:Gbem_1389 AzlC family protein YP_003503754.1 KEGG: pap:PSPA7_3415 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain YP_003503755.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: gsu:GSU1194 amino acid transporter LysE YP_003503756.1 PFAM: Radical SAM domain protein; KEGG: dol:Dole_3188 radical SAM domain-containing protein YP_003503757.1 KEGG: dal:Dalk_5021 chromosome replication initiation inhibitor protein; TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR YP_003503758.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dvu:DVU0593 L-lysine exporter, putative YP_003503759.1 KEGG: ppd:Ppro_2012 deoxyribodipyrimidine photolyase; TIGRFAM: deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein YP_003503760.1 KEGG: abu:Abu_0136 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003503761.1 KEGG: gem:GM21_2194 response regulator receiver sensor signal transduction histidine kinase YP_003503762.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dat:HRM2_23730 LguL YP_003503763.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: ftn:FTN_0005 divalent inorganic cation transporter YP_003503764.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dds:Ddes_1441 redoxin domain protein YP_003503765.1 KEGG: afw:Anae109_1491 putative RNA methylase YP_003503767.1 KEGG: bba:Bd2899 protoporphyrinogen oxidase YP_003503768.1 PFAM: Uncharacterised protein family UPF0324; KEGG: glo:Glov_0952 hypothetical protein YP_003503769.1 KEGG: wsu:WS1634 cyclophilin-type peptidyl-prolyl isomerase; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type YP_003503770.1 KEGG: wsu:WS1634 cyclophilin-type peptidyl-prolyl isomerase; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type YP_003503771.1 KEGG: afr:AFE_1527 Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: GAF domain protein; AAA ATPase YP_003503772.1 KEGG: gme:Gmet_0672 4Fe-4S ferredoxin, iron-sulfur binding protein; TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003503773.1 PFAM: NifZ family protein; KEGG: hha:Hhal_0277 NifZ family protein YP_003503774.1 KEGG: afr:AFE_1524 NAD(+)--dinitrogen-reductase ADP- D-ribosyltransferase; PFAM: Dinitrogenase reductase ADP- ribosyltransferase YP_003503775.1 TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; KEGG: ppd:Ppro_3462 ADP-ribosyl-(dinitrogen reductase) hydrolase; PFAM: ADP-ribosylation/Crystallin J1 YP_003503776.1 KEGG: gsu:GSU2376 hypothetical protein YP_003503778.1 TIGRFAM: nitrogenase iron protein; KEGG: tau:Tola_0650 nitrogenase iron protein; PFAM: NifH/frxC-family protein YP_003503779.1 TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; KEGG: rpb:RPB_0970 nitrogenase molybdenum-iron protein alpha chain; PFAM: oxidoreductase/nitrogenase component 1 YP_003503780.1 TIGRFAM: nitrogenase molybdenum-iron protein beta chain; KEGG: mca:MCA0231 nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1 YP_003503781.1 KEGG: rhi:NGR234_395 FixU; TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein YP_003503782.1 KEGG: azo:azo0562 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1 YP_003503783.1 TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; KEGG: bvi:Bcep1808_6021 nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; PFAM: oxidoreductase/nitrogenase component 1 YP_003503784.1 KEGG: bbt:BBta_5920 nitrogenase molybdenum-iron protein NifX; TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_003503785.1 KEGG: afr:AFE_1514 hypothetical protein YP_003503786.1 PFAM: pyruvate carboxyltransferase; KEGG: ppd:Ppro_3466 trans-homoaconitate synthase YP_003503787.1 TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM domain protein; KEGG: tau:Tola_0604 nitrogenase cofactor biosynthesis protein NifB; SMART: Elongator protein 3/MiaB/NifB YP_003503789.1 TIGRFAM: pyruvate kinase; KEGG: dal:Dalk_3774 pyruvate kinase; PFAM: Pyruvate kinase barrel; HpcH/HpaI aldolase; Pyruvate kinase alpha/beta YP_003503790.1 KEGG: ppd:Ppro_0789 hypothetical protein YP_003503791.1 KEGG: rpa:RPA2116 hypothetical protein YP_003503792.1 PFAM: heat shock protein Hsp20; KEGG: maq:Maqu_3394 heat shock protein HSP20 YP_003503793.1 PFAM: histidine triad (HIT) protein; KEGG: rma:Rmag_0509 histidine triad (HIT) protein YP_003503794.1 KEGG: ank:AnaeK_3438 glycosyl transferase family 39 YP_003503795.1 KEGG: dat:HRM2_10430 transcriptional regulatory protein; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003503796.1 KEGG: dat:HRM2_10420 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003503797.1 PFAM: Cupin 2 conserved barrel domain protein YP_003503798.1 PFAM: major facilitator superfamily MFS_1; KEGG: dat:HRM2_48900 putative major facilitator superfamily protein YP_003503799.1 KEGG: dvm:DvMF_1429 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003503800.1 PFAM: Aldehyde Dehydrogenase; KEGG: ara:Arad_7566 aldehyde dehydrogenase protein YP_003503801.1 KEGG: sfr:Sfri_0863 hypothetical protein YP_003503802.1 KEGG: ppd:Ppro_0262 ATPase YP_003503803.1 TIGRFAM: HipA N-terminal domain protein; KEGG: lpf:lpl2291 hypothetical protein YP_003503804.1 KEGG: abu:Abu_1172 putative DNA helicase YP_003503805.1 KEGG: sbo:SBO_1137 hypothetical protein YP_003503807.1 KEGG: maq:Maqu_2981 IstB ATP binding domain- containing protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003503808.1 PFAM: Integrase catalytic region; KEGG: psa:PST_3409 ISPsy14, transposase YP_003503810.1 PFAM: Integrase catalytic region; KEGG: sat:SYN_01900 transposase YP_003503811.1 KEGG: sat:SYN_01899 IstB-like ATP binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003503813.1 PFAM: Integrase catalytic region; KEGG: gur:Gura_0559 integrase catalytic subunit YP_003503814.1 KEGG: gur:Gura_0558 IstB ATP binding domain- containing protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003503815.1 PFAM: transposase IS3/IS911 family protein; KEGG: dde:Dde_3362 transposase (class V) YP_003503818.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: glo:Glov_2851 integrase family protein YP_003503819.1 KEGG: xac:XAC2383 phosphate-binding protein YP_003503820.1 PFAM: CoA-binding domain protein; KEGG: tbd:Tbd_2525 hypothetical protein YP_003503821.1 KEGG: ccv:CCV52592_0104 flagellar basal body rod protein FlgG; TIGRFAM: fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein YP_003503822.1 KEGG: dde:Dde_2687 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003503823.1 TIGRFAM: arginyl-tRNA synthetase; KEGG: gbm:Gbem_2283 arginyl-tRNA synthetase YP_003503824.1 PFAM: Sporulation domain protein; KEGG: pca:Pcar_0743 hypothetical protein YP_003503825.1 KEGG: pca:Pcar_2763 hypothetical protein YP_003503826.1 PFAM: ThiJ/PfpI domain protein; KEGG: asa:ASA_4195 isoprenoid biosynthesis protein with amidotransferase-like domain YP_003503827.1 TIGRFAM: stationary-phase survival protein SurE; KEGG: sfu:Sfum_1169 stationary-phase survival protein SurE; PFAM: Survival protein SurE YP_003503829.1 KEGG: TTC21B; tetratricopeptide repeat domain 21B YP_003503830.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: aeh:Mlg_1436 MotA/TolQ/ExbB proton channel YP_003503831.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dde:Dde_2155 biopolymer transport protein (ExbD2) YP_003503833.1 PFAM: protein of unknown function DUF185; KEGG: gur:Gura_0943 hypothetical protein YP_003503834.1 KEGG: hypothetical protein YP_003503836.1 KEGG: dma:DMR_18990 dethiobiotin synthetase; TIGRFAM: dethiobiotin synthase YP_003503837.1 KEGG: dma:DMR_18970 putative adenosylmethionine-8- amino-7-oxononanoate aminotransferase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III YP_003503838.1 KEGG: dps:DP1079 hypothetical protein YP_003503840.1 TIGRFAM: 8-amino-7-oxononanoate synthase; KEGG: dma:DMR_18980 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; aminotransferase class-III YP_003503841.1 KEGG: dma:DMR_18960 hypothetical protein YP_003503842.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dma:DMR_18950 putative biotin synthesis protein BioC YP_003503843.1 KEGG: gbm:Gbem_2954 hypothetical protein YP_003503844.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: aeh:Mlg_1160 molybdopterin biosynthesis protein MoeB YP_003503845.1 KEGG: afw:Anae109_3836 SSS family solute/sodium (Na+) symporter; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_003503846.1 PFAM: protein of unknown function DUF485; KEGG: ade:Adeh_3702 hypothetical protein YP_003503847.1 KEGG: aeh:Mlg_0670 cyclic nucleotide-binding protein; PFAM: protein of unknown function DUF294 nucleotidyltransferase putative; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; cyclic nucleotide-binding; CBS domain containing protein; SMART: CBS domain containing protein YP_003503849.1 KEGG: abc:ACICU_00082 hypothetical protein YP_003503851.1 PFAM: protein of unknown function DUF77; KEGG: sun:SUN_2358 hypothetical protein YP_003503854.1 PFAM: TnsA endonuclease; KEGG: afr:AFE_1201 Tn5468, transposase protein A YP_003503855.1 KEGG: afr:AFE_3198 Tn5468, transposase protein B YP_003503856.1 PFAM: Integrase catalytic region; KEGG: pca:Pcar_0539 putative transposase YP_003503857.1 PFAM: transposase IS3/IS911 family protein; KEGG: dde:Dde_3362 transposase (class V) YP_003503858.1 KEGG: ftn:FTN_0761 radical SAM family protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003503860.1 KEGG: pat:Patl_2779 alpha-L-glutamate ligase; TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; glutathione synthetase ATP-binding; protein of unknown function DUF201 YP_003503861.1 PFAM: protein of unknown function DUF785; KEGG: abu:Abu_2189 hypothetical protein YP_003503862.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: dal:Dalk_4202 glutathione-dependent formaldehyde-activating GFA YP_003503863.1 PFAM: Radical SAM domain protein; HemN domain protein; KEGG: wsu:WS0113 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_003503864.1 PFAM: beta-lactamase domain protein; KEGG: gur:Gura_4225 beta-lactamase domain- containing protein YP_003503866.1 PFAM: glycoside hydrolase family 24; KEGG: abu:Abu_1520 phage-related lysozyme YP_003503868.1 KEGG: abu:Abu_0848 tautomerase; TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase YP_003503869.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF1228; KEGG: acp:A2cp1_0330 major facilitator superfamily MFS_1 YP_003503870.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: abu:Abu_0849 LysR family transcriptional regulator YP_003503871.1 KEGG: dat:HRM2_17730 channel protein (hemolysin III family protein); TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein YP_003503872.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bcm:Bcenmc03_4446 hypothetical protein YP_003503874.1 KEGG: dds:Ddes_0574 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components YP_003503875.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; KEGG: wsu:WS0415 sensor kinase of two-component regulatory system; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein YP_003503876.1 TIGRFAM: alanine dehydrogenase; KEGG: dvm:DvMF_2154 alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein YP_003503877.1 SMART: Rhodanese domain protein; KEGG: pca:Pcar_1389 hypothetical protein YP_003503878.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; response regulator receiver; PAS fold domain protein; KEGG: sse:Ssed_1934 hypothetical protein; SMART: GGDEF domain containing protein; response regulator receiver; PAS domain containing protein YP_003503879.1 PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: sfu:Sfum_2340 redoxin domain protein YP_003503880.1 KEGG: glo:Glov_1969 adenylate/guanylate cyclase with CHASE sensor; PFAM: CHASE2 domain protein; adenylyl cyclase class- 3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase YP_003503881.1 TIGRFAM: 6-phosphofructokinase; KEGG: gur:Gura_1703 6-phosphofructokinase; PFAM: phosphofructokinase YP_003503882.1 KEGG: bgl:bglu_1g06200 putative ATP:cob(I)alamin adenosyltransferase; TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase YP_003503883.1 PFAM: Protein of unknown function YOR215C, mitochondrial; KEGG: ade:Adeh_0719 hypothetical protein YP_003503884.1 PFAM: Colicin V production protein; KEGG: cha:CHAB381_1644 CvpA family protein YP_003503885.1 KEGG: gme:Gmet_2974 MutS 2 protein; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2 YP_003503886.1 KEGG: gem:GM21_2320 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein YP_003503887.1 PFAM: AFG1-family ATPase; KEGG: rfe:RF_0328 putative ATPase n2B YP_003503888.1 PFAM: inositol monophosphatase; KEGG: abu:Abu_0443 inositol-1-monophosphatase YP_003503889.1 KEGG: rlt:Rleg2_4527 two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003503890.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; KEGG: wsu:WS1861 sensor kinase of two-component regulatory system; SMART: ATP-binding region ATPase domain protein YP_003503891.1 KEGG: tdn:Suden_1314 hypothetical protein YP_003503892.1 KEGG: tdn:Suden_1315 ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003503893.1 PFAM: protein of unknown function DUF214; KEGG: tdn:Suden_1316 hypothetical protein YP_003503894.1 KEGG: tdn:Suden_1317 hypothetical protein YP_003503895.1 KEGG: glo:Glov_1547 extracellular solute-binding protein family 1 YP_003503896.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: gme:Gmet_1707 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003503897.1 KEGG: dar:Daro_2902 response regulator receiver; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver YP_003503898.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ade:Adeh_3779 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region YP_003503899.1 PFAM: Radical SAM domain protein; KEGG: dar:Daro_1157 radical SAM family protein YP_003503900.1 KEGG: sat:SYN_01947 anthranilate synthase component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein YP_003503901.1 KEGG: abu:Abu_2004 anthranilate synthase component II; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I YP_003503902.1 KEGG: hch:HCH_06127 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like YP_003503903.1 KEGG: bav:BAV3152 indole-3-glycerol phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase YP_003503904.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: gem:GM21_2257 phosphoribosylanthranilate isomerase YP_003503905.1 KEGG: cco:CCC13826_0972 tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003503906.1 KEGG: bte:BTH_II0681 tryptophan synthase subunit alpha; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain YP_003503907.1 KEGG: sat:SYN_02624 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003503908.1 PFAM: ferric-uptake regulator; KEGG: wsu:WS0545 peroxide stress regulator YP_003503909.1 KEGG: dal:Dalk_2568 TRAP transporter, 4TM/12TM fusion protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_003503910.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: dal:Dalk_2569 TRAP transporter solute receptor, TAXI family YP_003503911.1 PFAM: UspA domain protein; KEGG: gur:Gura_2933 UspA domain-containing protein YP_003503912.1 PFAM: pseudouridine synthase; KEGG: nis:NIS_1506 ribosomal large subunit pseudouridine synthase D YP_003503913.1 PFAM: ribosomal L11 methyltransferase; KEGG: hac:Hac_1179 ribosomal protein L11 methyltransferase YP_003503914.1 PFAM: metallophosphoesterase; KEGG: sat:SYN_00526 calcineurin-like phosphoesterase YP_003503915.1 PFAM: protein of unknown function DUF558; KEGG: ftm:FTM_1114 16S ribosomal RNA methyltransferase RsmE YP_003503916.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: pag:PLES_12121 putative cytosine/adenosine deaminase YP_003503917.1 PFAM: type IV pilus assembly PilZ YP_003503918.1 TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; KEGG: bba:Bd3775 primosomal replication factor Y; SMART: DEAD-like helicase ; helicase domain protein YP_003503919.1 PFAM: AMP-dependent synthetase and ligase; KEGG: nam:NAMH_1365 long-chain-fatty-acid--CoA ligase YP_003503920.1 KEGG: dal:Dalk_0395 maf protein; TIGRFAM: maf protein; PFAM: Maf family protein YP_003503921.1 KEGG: tmz:Tmz1t_0773 heptaprenyl diphosphate synthase component I YP_003503922.1 KEGG: mmb:Mmol_2266 hypothetical protein YP_003503923.1 PFAM: ApbE family lipoprotein; KEGG: hch:HCH_02590 thiamine biosynthesis lipoprotein YP_003503924.1 PFAM: Radical SAM domain protein; KEGG: dol:Dole_2431 radical SAM domain-containing protein YP_003503925.1 KEGG: gem:GM21_3477 trans- hexaprenyltranstransferase; PFAM: Polyprenyl synthetase YP_003503927.1 KEGG: hypothetical protein; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP YP_003503928.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: dvl:Dvul_2280 HflC protein; SMART: band 7 protein YP_003503929.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: dvl:Dvul_2279 HflK protein; SMART: band 7 protein YP_003503930.1 KEGG: geo:Geob_2386 translation elongation factor G; TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV YP_003503932.1 KEGG: afw:Anae109_1886 integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_003503933.1 KEGG: gur:Gura_2621 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR YP_003503935.1 KEGG: nam:NAMH_0979 putative lipoprotein YP_003503936.1 KEGG: wsu:WS1151 hypothetical protein YP_003503937.1 PFAM: Lytic transglycosylase catalytic; KEGG: dol:Dole_2185 lytic transglycosylase catalytic YP_003503938.1 KEGG: tdn:Suden_0394 hypothetical protein YP_003503939.1 KEGG: noc:Noc_2976 anti-sigma factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS YP_003503940.1 KEGG: gur:Gura_0874 Ni/Fe-hydrogenase, b-type cytochrome subunit; TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561 YP_003503941.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_2563 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region YP_003503942.1 KEGG: maq:Maqu_0157 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003503943.1 PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: ppd:Ppro_2937 diguanylate phosphodiesterase YP_003503944.1 KEGG: gsu:GSU2308 malate oxidoreductase; PFAM: malic protein domain protein; malic protein NAD-binding YP_003503945.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: dal:Dalk_1209 TRAP transporter solute receptor, TAXI family YP_003503946.1 KEGG: dal:Dalk_1208 TRAP transporter, 4TM/12TM fusion protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_003503947.1 KEGG: gur:Gura_1947 hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein YP_003503948.1 KEGG: gur:Gura_1946 nickel-dependent hydrogenase, large subunit; PFAM: nickel-dependent hydrogenase large subunit YP_003503949.1 PFAM: Polysulphide reductase NrfD; KEGG: glo:Glov_0146 putative hydrogenase 2 b cytochrome subunit YP_003503950.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_0145 hydrogenase 2 protein HybA YP_003503951.1 TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: glo:Glov_0144 hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003503952.1 PFAM: putative RNA methylase; KEGG: sat:SYN_00221 N6-adenine-specific DNA methylase YP_003503954.1 KEGG: dma:DMR_45970 putative helicase; PFAM: DEAD/DEAH box helicase domain protein; Protein of unknown function DUF1998; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003503955.1 KEGG: pca:Pcar_1565 Na+/phosphate symporter; TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein YP_003503956.1 KEGG: glo:Glov_0589 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003503957.1 KEGG: dps:DP1885 PHO two-component system sensor histidine kinase; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003503958.1 KEGG: gme:Gmet_2705 phosphate uptake regulator, PhoU; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein YP_003503959.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: mxa:MXAN_2082 RNA methyltransferase YP_003503960.1 PFAM: Lytic transglycosylase catalytic; KEGG: bba:Bd2462 soluble lytic murein transglycosylase YP_003503961.1 KEGG: dat:HRM2_40650 SfsA; TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein YP_003503962.1 PFAM: DNA polymerase III delta; KEGG: gur:Gura_3132 DNA polymerase III, delta subunit YP_003503963.1 KEGG: hpj:jhp1453 hypothetical protein YP_003503964.1 KEGG: dal:Dalk_1193 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase YP_003503965.1 KEGG: dal:Dalk_4245 metal dependent phosphohydrolase; PFAM: GAF domain protein; SMART: GAF domain protein YP_003503966.1 KEGG: slo:Shew_2803 DNA-binding transcriptional regulator TorR; PFAM: response regulator receiver; SMART: response regulator receiver YP_003503967.1 KEGG: mxa:MXAN_4152 BirA bifunctional protein; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase YP_003503968.1 KEGG: mxa:MXAN_4151 pantothenate kinase; TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor YP_003503969.1 KEGG: sat:SYN_00927 hypothetical protein YP_003503970.1 KEGG: lhk:LHK_01244 aspartate-semialdehyde dehydrogenase YP_003503971.1 KEGG: afw:Anae109_0637 cysteine desulfurase; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003503972.1 KEGG: pca:Pcar_1859 NifU-like protein; TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein YP_003503973.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: pca:Pcar_2331 NifU-like protein YP_003503974.1 KEGG: dde:Dde_0765 CBS; PFAM: CBS domain containing protein; SMART: CBS domain containing protein YP_003503975.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dma:DMR_17770 acetyl-coenzyme A synthetase YP_003503976.1 KEGG: hha:Hhal_1900 cyclic nucleotide-binding protein; PFAM: protein of unknown function DUF294 nucleotidyltransferase putative; CBS domain containing protein; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; cyclic nucleotide-binding; SMART: CBS domain containing protein YP_003503978.1 KEGG: gem:GM21_2702 Na+/solute symporter; TIGRFAM: probable sodium symporter protein; PFAM: Na+/solute symporter YP_003503979.1 TIGRFAM: probable solute symporter protein; KEGG: gsu:GSU0519 hypothetical protein YP_003503980.1 KEGG: GJ11327 gene product from transcript GJ11327- RA YP_003503981.1 KEGG: hypothetical protein YP_003503983.1 KEGG: gsu:GSU0440 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy- lyase; PFAM: flavoprotein YP_003503984.1 KEGG: gme:Gmet_3393 prenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase YP_003503985.1 TIGRFAM: ferrochelatase; KEGG: gbm:Gbem_0039 ferrochelatase; PFAM: ferrochelatase YP_003503986.1 TIGRFAM: uroporphyrinogen decarboxylase; KEGG: gsu:GSU3453 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_003503987.1 PFAM: TM1410 hypothetical-related protein; KEGG: nmu:Nmul_A2438 hypothetical protein YP_003503988.1 KEGG: hhe:HH0135 D-3-phosphoglycerate dehydrogenase; TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; alanine dehydrogenase/PNT domain protein YP_003503989.1 PFAM: protein of unknown function UPF0047; KEGG: glo:Glov_2637 protein of unknown function UPF0047 YP_003503990.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mxa:MXAN_3705 GAF domain/GGDEF domain- containing protein; SMART: GGDEF domain containing protein YP_003503991.1 KEGG: glo:Glov_0757 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type YP_003503992.1 KEGG: pca:Pcar_1049 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; cell division protein FtsA YP_003503993.1 KEGG: gbm:Gbem_2462 rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC YP_003503994.1 KEGG: hypothetical protein YP_003503995.1 TIGRFAM: penicillin-binding protein 2; KEGG: dat:HRM2_35240 MrdA; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003503996.1 KEGG: sat:SYN_00550 rod shape-determining protein; TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein YP_003503997.1 KEGG: geo:Geob_1240 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003503998.1 PFAM: conserved hypothetical protein; KEGG: geo:Geob_1393 hypothetical protein YP_003503999.1 KEGG: afw:Anae109_1372 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain YP_003504000.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dal:Dalk_2386 regulatory protein, FmdB family YP_003504001.1 PFAM: FeoA family protein; KEGG: dvl:Dvul_0674 FeoA family protein YP_003504002.1 KEGG: dat:HRM2_42720 FeoB2; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Miro domain protein; Ferrous iron transport B domain protein YP_003504004.1 KEGG: dma:DMR_38480 LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003504005.1 KEGG: dde:Dde_1175 RNA-binding region RNP-1; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein YP_003504006.1 KEGG: geo:Geob_0014 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003504007.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pca:Pcar_0112 putative amidase YP_003504008.1 KEGG: gme:Gmet_3044 acetyl-CoA hydrolase/transferase; PFAM: acetyl-CoA hydrolase/transferase YP_003504010.1 PFAM: protein of unknown function DUF486; KEGG: dal:Dalk_4457 protein of unknown function DUF486 YP_003504011.1 KEGG: dps:DP0973 V-type sodium ATP synthase, subunit J; PFAM: cation transporter YP_003504012.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dps:DP0974 hypothetical protein YP_003504013.1 KEGG: dps:DP0975 hypothetical protein YP_003504014.1 KEGG: hhe:HH0712 flavodoxin FldA; TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase YP_003504015.1 KEGG: ilo:IL2080 hypothetical protein YP_003504016.1 KEGG: ilo:IL2082 hypothetical protein YP_003504017.1 KEGG: dvu:DVU2013 hydroxylamine reductase; TIGRFAM: hybrid cluster protein; PFAM: Prismane YP_003504018.1 KEGG: saz:Sama_2502 putative methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_003504019.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: pca:Pcar_2948 serine endoprotease; SMART: PDZ/DHR/GLGF domain protein YP_003504020.1 SMART: helicase c2; DEAD-like helicase; KEGG: tgr:Tgr7_1409 helicase C2 YP_003504021.1 KEGG: afw:Anae109_2086 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI) YP_003504022.1 KEGG: PP-loop family protein; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein YP_003504023.1 TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: ank:AnaeK_0134 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003504024.1 SMART: AAA ATPase; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: gsu:GSU1809 cell division protein FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5 YP_003504025.1 TIGRFAM: dihydropteroate synthase; KEGG: shm:Shewmr7_1085 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_003504026.1 PFAM: protein of unknown function DUF147; KEGG: dvl:Dvul_1785 hypothetical protein YP_003504027.1 PFAM: YbbR family protein; KEGG: pca:Pcar_1000 hypothetical protein YP_003504028.1 TIGRFAM: phosphoglucosamine mutase; KEGG: pca:Pcar_1001 phosphohexomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II YP_003504029.1 TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; KEGG: gur:Gura_2729 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ YP_003504030.1 KEGG: vfm:VFMJ11_2188 4'-phosphopantetheinyl transferase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase YP_003504031.1 TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: glo:Glov_1728 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase YP_003504032.1 TIGRFAM: CTP synthase; KEGG: gbm:Gbem_1600 CTP synthase; PFAM: CTP synthase-like; glutamine amidotransferase class-I YP_003504033.1 KEGG: ppd:Ppro_0970 3-deoxy-D-manno-octulosonate 8- phosphate phosphatase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA YP_003504034.1 PFAM: protein of unknown function DUF1239 YP_003504035.1 KEGG: gme:Gmet_1281 OstA-like protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein YP_003504036.1 KEGG: ypb:YPTS_3711 putative ABC transporter ATP- binding protein YhbG; PFAM: ABC transporter related; SMART: AAA ATPase YP_003504037.1 KEGG: bba:Bd0843 RNA polymerase sigma-54 factor; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor YP_003504038.1 KEGG: gsu:GSU1886 ribosomal subunit interface protein; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA YP_003504039.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: pca:Pcar_1936 phosphotransferase system enzyme IIA, regulates nitrogen metabolism YP_003504040.1 PFAM: HPr serine kinase domain protein; KEGG: afw:Anae109_0151 HPr kinase/phosphorylase YP_003504041.1 PFAM: conserved hypothetical protein; KEGG: ank:AnaeK_0154 hypothetical protein YP_003504042.1 PFAM: PTS system fructose subfamily IIA component; KEGG: gsu:GSU1883 PTS system, IIA component, putative YP_003504043.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: sat:SYN_02845 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB YP_003504044.1 KEGG: sat:SYN_02846 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC YP_003504045.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: afw:Anae109_0156 PTS system mannose/fructose/sorbose family IID component YP_003504046.1 KEGG: gme:Gmet_1288 HPrNtr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr YP_003504047.1 KEGG: gme:Gmet_1289 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region YP_003504048.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; KEGG: dvu:DVU1846 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_003504049.1 PFAM: protein of unknown function DUF362; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gsu:GSU0494 iron-sulfur cluster-binding protein YP_003504050.1 PFAM: protein of unknown function DUF205; KEGG: gme:Gmet_3020 acyl-phosphate glycerol-3- phosphate acyltransferase YP_003504051.1 TIGRFAM: riboflavin biosynthesis protein RibD; KEGG: sfu:Sfum_1378 riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding YP_003504052.1 TIGRFAM: riboflavin synthase, alpha subunit; KEGG: ppg:PputGB1_0561 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein YP_003504053.1 KEGG: gme:Gmet_1626 GTP cyclohydrolase II / 3,4- dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II YP_003504054.1 TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: dma:DMR_04600 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase YP_003504055.1 KEGG: ank:AnaeK_2830 NusB antitermination factor; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44 YP_003504058.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: gme:Gmet_2720 microcin-processing peptidase 2 YP_003504059.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dal:Dalk_3822 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region YP_003504060.1 PFAM: protein of unknown function DUF502; KEGG: cbc:CbuK_1787 hypothetical membrane spanning protein YP_003504061.1 KEGG: geo:Geob_3375 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase YP_003504062.1 KEGG: mxa:MXAN_5787 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E YP_003504063.1 PFAM: outer membrane efflux protein; KEGG: wsu:WS0413 hypothetical protein YP_003504064.1 KEGG: hch:HCH_06801 transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003504065.1 PFAM: conserved hypothetical protein; KEGG: hypothetical protein YP_003504066.1 KEGG: dma:DMR_17210 PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein YP_003504068.1 KEGG: glo:Glov_1856 indolepyruvate ferredoxin oxidoreductase, alpha subunit; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein YP_003504069.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: glo:Glov_1857 indolepyruvate oxidoreductase subunit beta YP_003504070.1 KEGG: tau:Tola_1783 PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein YP_003504071.1 PFAM: protein of unknown function DUF150; KEGG: pca:Pcar_1552 hypothetical protein YP_003504072.1 TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; KEGG: dal:Dalk_4737 transcription elongation factor NusA; SMART: KH domain protein YP_003504073.1 PFAM: protein of unknown function DUF448; KEGG: pca:Pcar_1554 L7Ae family ribosomal protein YP_003504074.1 KEGG: dvm:DvMF_2513 translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; elongation factor Tu domain 2 protein YP_003504075.1 KEGG: ppd:Ppro_0964 ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A YP_003504076.1 KEGG: ftn:FTN_1462 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein YP_003504077.1 KEGG: mxa:MXAN_2072 ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15 YP_003504078.1 SMART: KH domain protein; TIGRFAM: polyribonucleotide nucleotidyltransferase; KEGG: gur:Gura_1906 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; Polynucleotide phosphorylase, phosphorolytic RNA- binding, bacterial/organelle-type; KH type 2 domain protein; Exoribonuclease, phosphorolytic domain 2; K Homology, type 1, subgroup YP_003504079.1 PFAM: peptidase M16 domain protein; KEGG: wpi:WPa_0591 peptidase, M16 family YP_003504080.1 TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; KEGG: gbm:Gbem_1310 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_003504081.1 TIGRFAM: alpha-glucan phosphorylase; KEGG: gsu:GSU0371 carbohydrate phosphorylase family protein; PFAM: glycosyl transferase family 35 YP_003504082.1 KEGG: sfu:Sfum_0998 Appr-1-p processing domain protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein YP_003504083.1 PFAM: major facilitator superfamily MFS_1; KEGG: dat:HRM2_32890 putative permease of the major facilitator superfamily YP_003504084.1 PFAM: protein of unknown function DUF152; KEGG: mmw:Mmwyl1_3610 hypothetical protein YP_003504085.1 PFAM: alanine racemase domain protein; KEGG: gsu:GSU2544 hypothetical protein YP_003504086.1 PFAM: protein of unknown function YGGT; KEGG: aeh:Mlg_0339 protein of unknown function YGGT YP_003504087.1 PFAM: TrkA-N domain protein; Ion transport 2 domain protein ; TrkA-C domain protein; KEGG: glo:Glov_0875 TrkA-N domain protein YP_003504088.1 KEGG: sfu:Sfum_3656 PilT protein domain protein; PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc YP_003504089.1 KEGG: abm:ABSDF2025 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_003504090.1 PFAM: peptidase M50; KEGG: dps:DP0062 hypothetical protein YP_003504091.1 TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: dvm:DvMF_2336 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_003504092.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: pca:Pcar_1299 hypothetical protein YP_003504093.1 KEGG: ade:Adeh_1683 condensin subunit ScpB; TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB YP_003504094.1 KEGG: sdn:Sden_1748 23S rRNA pseudouridine synthase F; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003504095.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: gem:GM21_2966 6-pyruvoyl tetrahydropterin synthase and hypothetical protein YP_003504096.1 KEGG: gur:Gura_1374 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein YP_003504097.1 KEGG: pca:Pcar_2345 two component signal transduction response regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase YP_003504099.1 PFAM: transposase IS3/IS911 family protein; KEGG: dde:Dde_3341 hypothetical protein YP_003504100.1 KEGG: gur:Gura_0784 helix-turn-helix domain- containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003504101.1 TIGRFAM: LexA repressor; KEGG: ppd:Ppro_1572 SOS-response transcriptional repressor, LexA; PFAM: LexA DNA-binding domain protein; Peptidase S24, S26A and S26B, conserved region YP_003504102.1 KEGG: gme:Gmet_1440 hypothetical protein YP_003504103.1 KEGG: ppd:Ppro_1904 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein YP_003504104.1 KEGG: adsl; adenylosuccinate lyase; K01756 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Adenylosuccinate lyase-like; fumarate lyase YP_003504105.1 PFAM: amidohydrolase; KEGG: sfu:Sfum_2961 amidohydrolase YP_003504106.1 KEGG: gme:Gmet_2290 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003504108.1 PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; KEGG: dat:HRM2_09650 UshA YP_003504109.1 KEGG: cja:CJA_0947 hypothetical protein YP_003504110.1 TIGRFAM: YD repeat protein; KEGG: cja:CJA_0948 rhs repeat family YP_003504111.1 KEGG: cja:CJA_0949 hypothetical protein YP_003504112.1 KEGG: afw:Anae109_1447 ribonuclease R YP_003504113.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: pca:Pcar_1584 hypothetical protein YP_003504114.1 PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_1585 MinD family ATPase YP_003504115.1 PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ppd:Ppro_1951 cobyrinic acid a,c-diamide synthase YP_003504116.1 KEGG: ppr:PBPRA1178 anaerobic C4-dicarboxylate transporter; TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter YP_003504117.1 KEGG: sfu:Sfum_3992 response regulator receiver and unknown domain protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003504118.1 KEGG: sfu:Sfum_3991 signal transduction histidine kinase regulating citrate/malate metabolism; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003504119.1 PFAM: glycosyl transferase group 1; KEGG: mca:MCA2126 glycosyl transferase, group 1 family protein YP_003504120.1 KEGG: sdn:Sden_2922 dihydrofolate reductase; PFAM: dihydrofolate reductase region YP_003504121.1 TIGRFAM: thymidylate synthase; KEGG: nmc:NMC1624 thymidylate synthase; PFAM: thymidylate synthase YP_003504122.1 PFAM: glycosyl transferase family 2; KEGG: sat:SYN_00376 glycosyltransferase involved in cell wall biogenesis YP_003504123.1 PFAM: SNARE associated Golgi protein; KEGG: gbm:Gbem_0458 SNARE associated Golgi protein YP_003504124.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; FAD dependent oxidoreductase; HI0933 family protein; KEGG: aeh:Mlg_0751 pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_003504125.1 PFAM: Protein of unknown function DUF2064; KEGG: dvu:DVU1891 hypothetical protein YP_003504126.1 KEGG: gur:Gura_2810 S-isoprenylcysteine methyltransferase-like protein YP_003504127.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; GAF domain protein; KEGG: geo:Geob_3492 putative phytochrome sensor protein; SMART: GAF domain protein YP_003504128.1 PFAM: protein of unknown function DUF191; KEGG: dde:Dde_0799 hypothetical protein YP_003504129.1 PFAM: Mammalian cell entry related domain protein; KEGG: sat:SYN_00409 ABC-type transport system involved in resistance to organic solvents, periplasmic component YP_003504130.1 KEGG: sat:SYN_00410 ABC-type transport system, ATP- binding component; PFAM: ABC transporter related; SMART: AAA ATPase YP_003504131.1 PFAM: protein of unknown function DUF140; KEGG: sat:SYN_00411 ABC-type transport system involved in resistance to organic solvents, permease component YP_003504132.1 TIGRFAM: alanine racemase; KEGG: gme:Gmet_2908 alanine racemase; PFAM: alanine racemase domain protein YP_003504133.1 KEGG: geo:Geob_3093 hypothetical protein; TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein YP_003504134.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: gur:Gura_1709 peptidase U62, modulator of DNA gyrase YP_003504135.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gsu:GSU2061 acetyltransferase YP_003504137.1 KEGG: dvl:Dvul_1686 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003504138.1 TIGRFAM: aspartate carbamoyltransferase; KEGG: pca:Pcar_1615 aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region YP_003504139.1 KEGG: cff:CFF8240_1476 dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3 YP_003504140.1 PFAM: periplasmic binding protein; KEGG: nam:NAMH_0731 HemV-3 iron (III) ABC transporter, ATP-binding protein YP_003504141.1 KEGG: gsu:GSU0395 hypothetical protein; TIGRFAM: C_GCAxxG_C_C family protein; PFAM: C_GCAxxG_C_C family protein YP_003504142.1 KEGG: gur:Gura_2317 putative alpha- isopropylmalate/homocitrate synthase family transferase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase YP_003504143.1 KEGG: sat:SYN_02781 aspartokinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein YP_003504144.1 TIGRFAM: proposed homoserine kinase; phosphonopyruvate decarboxylase-related protein; KEGG: gur:Gura_2382 cofactor-independent phosphoglycerate mutase; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; metalloenzyme domain protein YP_003504145.1 KEGG: gme:Gmet_1629 homoserine dehydrogenase; PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding YP_003504146.1 KEGG: vcj:VCD_002990 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein YP_003504147.1 KEGG: gem:GM21_1820 dihydroorotate dehydrogenase family protein; TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate oxidase YP_003504148.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: gem:GM21_1819 oxidoreductase FAD/NAD(P)- binding domain protein YP_003504149.1 KEGG: gsu:GSU1276 carbamoyl-phosphate synthase, large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; RimK domain protein ATP-grasp; MGS domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein YP_003504150.1 KEGG: dma:DMR_01320 AraC family transcriptional regulator; PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003504151.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dps:DP1868 NADH-dependent alcohol dehydrogenase YP_003504152.1 PFAM: zinc finger SWIM domain protein; KEGG: ppr:PBPRA2668 hypothetical protein YP_003504153.1 TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG: gme:Gmet_1777 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase ; helicase domain protein YP_003504154.1 KEGG: dma:DMR_20770 chemotaxis protein CheW; PFAM: CheW domain protein; SMART: CheW domain protein YP_003504155.1 TIGRFAM: aspartate 1-decarboxylase; KEGG: afw:Anae109_0377 aspartate 1-decarboxylase; PFAM: aspartate decarboxylase YP_003504156.1 TIGRFAM: pantoate/beta-alanine ligase; KEGG: ppd:Ppro_3535 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_003504157.1 TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; KEGG: glo:Glov_0957 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase YP_003504158.1 KEGG: bur:Bcep18194_A5003 XRE family transcriptional regulator; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003504159.1 KEGG: abu:Abu_1285 hypothetical protein YP_003504160.1 KEGG: tgr:Tgr7_2244 hypothetical protein YP_003504161.1 KEGG: pca:Pcar_1040 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); GAD domain protein; nucleic acid binding OB-fold tRNA/helicase- type YP_003504162.1 TIGRFAM: histidyl-tRNA synthetase; KEGG: gur:Gura_1887 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein YP_003504163.1 KEGG: dal:Dalk_2926 putative cytidylate kinase, putative YP_003504164.1 KEGG: dihydro-6-hydroxymethylpterin pyrophosphokinase (HPPK) ; K00796 dihydropteroate synthase; TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropter idinepyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK YP_003504165.1 TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: gsu:GSU3116 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative; SMART: phospholipid/glycerol acyltransferase YP_003504166.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; HI0933 family protein; KEGG: cbd:CBUD_1612 dihydrolipoamide dehydrogenase YP_003504167.1 TIGRFAM: adenosylhomocysteinase; KEGG: xcv:XCV0856 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S- adenosyl-L-homocysteine hydrolase, NAD binding YP_003504168.1 TIGRFAM: S-adenosylmethionine synthetase; KEGG: geo:Geob_2241 methionine adenosyltransferase; PFAM: S-adenosylmethionine synthetase YP_003504169.1 KEGG: dma:DMR_21820 hypothetical protein YP_003504170.1 KEGG: glo:Glov_2306 ribosomal-protein-alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_003504171.1 PFAM: peptidase M22 glycoprotease; KEGG: atc:AGR_C_617 hypothetical protein YP_003504172.1 PFAM: beta-lactamase domain protein; KEGG: gsu:GSU1123 metallo-beta-lactamase family protein YP_003504173.1 KEGG: geo:Geob_1395 D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_003504174.1 KEGG: mmw:Mmwyl1_4232 integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE YP_003504175.1 KEGG: gme:Gmet_0868 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_003504178.1 KEGG: pca:Pcar_1111 flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS YP_003504179.1 PFAM: flagellar hook-associated 2 domain protein; flagellar hook-associated protein 2 domain protein; KEGG: GK12566 gene product from transcript GK12566- RA YP_003504180.1 KEGG: gem:GM21_1766 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003504181.1 KEGG: dal:Dalk_2742 ribonuclease III; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein YP_003504182.1 PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2298 transposase IS4 family protein YP_003504185.1 PFAM: transposase IS3/IS911 family protein; KEGG: lpp:lpp0199 hypothetical protein YP_003504186.1 PFAM: Integrase catalytic region; KEGG: ent:Ent638_4320 integrase catalytic subunit YP_003504187.1 KEGG: gsu:GSU0763 helicase, putative YP_003504188.1 PFAM: N-6 DNA methylase; KEGG: psa:PST_0252 type I restriction-modification system, M subunit YP_003504189.1 KEGG: dvu:DVU1708 hypothetical protein YP_003504190.1 PFAM: restriction modification system DNA specificity domain; KEGG: sfr:Sfri_2607 restriction modification system DNA specificity subunit YP_003504191.1 KEGG: psa:PST_0248 type I restriction-modification system endonuclease; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase YP_003504192.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: kpn:KPN_pKPN4p07083 putative transposase YP_003504193.1 KEGG: dal:Dalk_1289 hypothetical protein YP_003504194.1 KEGG: rpa:RPA4083 hypothetical protein YP_003504195.1 KEGG: hch:HCH_01435 signal transduction histidine kinase; PFAM: histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003504196.1 KEGG: sat:SYN_01899 IstB-like ATP binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003504197.1 PFAM: Integrase catalytic region; KEGG: sat:SYN_01900 transposase YP_003504198.1 KEGG: abu:Abu_0433 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003504199.1 KEGG: dal:Dalk_1127 hypothetical protein YP_003504200.1 KEGG: prw:PsycPRwf_2121 osmolarity response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003504201.1 PFAM: outer membrane efflux protein; KEGG: pna:Pnap_4182 outer membrane efflux protein YP_003504202.1 PFAM: acriflavin resistance protein; KEGG: pol:Bpro_5560 acriflavin resistance protein YP_003504203.1 KEGG: pol:Bpro_5559 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; biotin/lipoyl attachment domain-containing protein YP_003504204.1 PFAM: regulatory protein TetR; KEGG: smd:Smed_2365 TetR family transcriptional regulator YP_003504205.1 PFAM: transposase IS3/IS911 family protein; KEGG: dde:Dde_3362 transposase (class V) YP_003504206.1 PFAM: Integrase catalytic region; KEGG: pca:Pcar_0539 putative transposase YP_003504207.1 PFAM: Integrase catalytic region; KEGG: ent:Ent638_4320 integrase catalytic subunit YP_003504208.1 PFAM: transposase IS3/IS911 family protein; KEGG: lpp:lpp0199 hypothetical protein YP_003504209.1 KEGG: gsu:GSU0763 helicase, putative YP_003504210.1 PFAM: transposase IS3/IS911 family protein; KEGG: dde:Dde_3362 transposase (class V) YP_003504211.1 PFAM: Integrase catalytic region; KEGG: pca:Pcar_0539 putative transposase YP_003504212.1 PFAM: transposase mutator type; MULE transposase, conserved domain; KEGG: son:SO_0708 transposase mutator family protein YP_003504213.1 KEGG: dde:Dde_0967 CoA enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: Protein of unknown function DUF2229, CoA enzyme activase; ATPase BadF/BadG/BcrA/BcrD type YP_003504214.1 KEGG: glo:Glov_2883 metal dependent phosphohydrolase; PFAM: protein of unknown function DUF1113; metal- dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003504215.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_0960 TetR family transcriptional regulator YP_003504216.1 PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2298 transposase IS4 family protein YP_003504217.1 KEGG: gem:GM21_0365 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003504219.1 PFAM: transposase mutator type; MULE transposase, conserved domain; KEGG: glo:Glov_3450 transposase mutator type YP_003504220.1 KEGG: dol:Dole_2642 heat shock protein HSP20 YP_003504221.1 PFAM: heat shock protein Hsp20; KEGG: dol:Dole_2643 heat shock protein HSP20 YP_003504222.1 PFAM: heat shock protein Hsp20; KEGG: dal:Dalk_2868 heat shock protein HSP20 YP_003504223.1 KEGG: dde:Dde_3508 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003504224.1 PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2298 transposase IS4 family protein YP_003504226.1 KEGG: wsu:WS1002 chemotaxis protein (TlpB); PFAM: Nitrate and nitrite sensing domain protein; chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer YP_003504227.1 PFAM: membrane protein of unknown function; KEGG: dal:Dalk_4979 membrane protein of unknown function YP_003504228.1 KEGG: cja:CJA_1643 hypothetical protein YP_003504229.1 PFAM: permease YjgP/YjgQ family protein; KEGG: geo:Geob_1523 permease YjgP/YjgQ family protein YP_003504230.1 PFAM: permease YjgP/YjgQ family protein; KEGG: sat:SYN_00415 permease YP_003504231.1 TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: glo:Glov_0348 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_003504232.1 KEGG: aha:AHA_0244 DNA-binding protein; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003504233.1 PFAM: Proline dehydrogenase; KEGG: dps:DP2492 proline dehydrogenase YP_003504234.1 KEGG: dat:HRM2_16880 PutA2; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase YP_003504235.1 PFAM: Extracellular ligand-binding receptor; KEGG: dat:HRM2_04950 LivJ2 YP_003504236.1 PFAM: inner-membrane translocator; KEGG: dps:DP2489 high-affinity branched-chain amino acid ABC-transporter, permease protein (BraD) YP_003504237.1 PFAM: inner-membrane translocator; KEGG: dat:HRM2_04930 LivM2 YP_003504238.1 KEGG: dps:DP2487 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003504239.1 KEGG: dps:DP2486 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003504240.1 TIGRFAM: glycyl-radical enzyme activating protein family; KEGG: dps:DP1824 pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein YP_003504241.1 KEGG: gbm:Gbem_2499 pyruvate formate-lyase PFL; PFAM: pyruvate formate-lyase PFL; formate C- acetyltransferase glycine radical YP_003504242.1 TIGRFAM: pyrroline-5-carboxylate reductase; KEGG: gur:Gura_0979 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding YP_003504243.1 KEGG: pca:Pcar_0758 esterase/lipase YP_003504244.1 KEGG: sat:SYN_01804 ribonuclease Z YP_003504245.1 KEGG: sat:SYN_00043 gluconate kinase YP_003504246.1 SMART: AP endonuclease family 2; TIGRFAM: apurinic endonuclease Apn1; KEGG: geo:Geob_1397 apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel YP_003504247.1 PFAM: Inositol phosphatase/fructose-16- bisphosphatase; KEGG: vcj:VCD_001818 fructose-1,6-bisphosphatase type I YP_003504248.1 TIGRFAM: DNA repair protein RecO YP_003504249.1 TIGRFAM: magnesium transporter; PFAM: MgtE integral membrane region; CBS domain containing protein; MgtE intracellular region; KEGG: pca:Pcar_0596 magnesium transporter; SMART: CBS domain containing protein YP_003504250.1 KEGG: gur:Gura_3150 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein YP_003504251.1 KEGG: dat:HRM2_22470 hypothetical protein; PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein YP_003504252.1 PFAM: protein of unknown function UPF0054; KEGG: nam:NAMH_0789 hypothetical protein YP_003504253.1 PFAM: PhoH family protein; K Homology, type 1, subgroup; KEGG: afw:Anae109_2713 PhoH family protein YP_003504254.1 KEGG: gur:Gura_2246 CBS domain-containing protein; PFAM: Polynucleotide adenylyltransferase region; phosphoesterase DHHA1; CBS domain containing protein; phosphoesterase RecJ domain protein; SMART: CBS domain containing protein YP_003504255.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dal:Dalk_0825 tyrosine recombinase XerD YP_003504256.1 PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: geo:Geob_2882 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), phosphate acetyltransferase YP_003504257.1 KEGG: glo:Glov_0597 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_003504259.1 PFAM: protein of unknown function DUF255; KEGG: nmu:Nmul_A0345 hypothetical protein YP_003504260.1 KEGG: sfu:Sfum_2664 hypothetical protein YP_003504261.1 PFAM: cysteine-rich small domain; KEGG: dma:DMR_05450 hypothetical protein YP_003504262.1 PFAM: protein of unknown function UPF0074; KEGG: pin:Ping_0631 transcriptional regulator, BadM/Rrf2 family protein YP_003504263.1 KEGG: ade:Adeh_1171 cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_003504264.1 KEGG: gbm:Gbem_1236 cytochrome c oxidase, cbb3- type, subunit II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c class I YP_003504265.1 KEGG: acp:A2cp1_1334 hypothetical protein YP_003504266.1 KEGG: afw:Anae109_1221 hypothetical protein YP_003504267.1 KEGG: ank:AnaeK_1234 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003504268.1 KEGG: afw:Anae109_1223 hypothetical protein YP_003504269.1 KEGG: ade:Adeh_1178 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3- type YP_003504270.1 KEGG: ade:Adeh_1177 copper-translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase YP_003504271.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: gsu:GSU2676 hypothetical protein YP_003504272.1 KEGG: abu:Abu_1099 hypothetical protein YP_003504273.1 KEGG: tbd:Tbd_0026 hypothetical protein YP_003504274.1 PFAM: UspA domain protein; KEGG: afw:Anae109_4087 UspA domain-containing protein YP_003504275.1 PFAM: aminotransferase class I and II; KEGG: aeh:Mlg_2554 aminotransferase YP_003504276.1 KEGG: abu:Abu_0526 methyl-accepting chemotaxis protein YP_003504278.1 PFAM: Bile acid:sodium symporter; KEGG: tmz:Tmz1t_1293 bile acid:sodium symporter YP_003504279.1 KEGG: geo:Geob_3225 hypothetical protein YP_003504280.1 KEGG: geo:Geob_3221 protein of unknown function DUF400 YP_003504281.1 KEGG: glo:Glov_0989 hypothetical protein YP_003504282.1 KEGG: afw:Anae109_1500 phage SPO1 DNA polymerase- related protein; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily YP_003504283.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; KEGG: gur:Gura_2927 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein YP_003504284.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; KEGG: avn:Avin_02820 DNA-directed RNA polymerase, omega subunit, RpoZ YP_003504285.1 SMART: guanylate kinase/L-type calcium channel region; TIGRFAM: guanylate kinase; KEGG: gme:Gmet_2327 guanylate kinase; PFAM: guanylate kinase YP_003504286.1 PFAM: domain of unknown function DUF1732; YicC domain protein; KEGG: gbm:Gbem_3214 domain of unknown function DUF1732 YP_003504287.1 KEGG: pca:Pcar_1958 membrane protease subunits, stomatin/prohibitin-like; PFAM: band 7 protein; SMART: band 7 protein YP_003504288.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: gur:Gura_4250 glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_003504289.1 KEGG: gsu:GSU1273 carbamoyl phosphate synthase small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I YP_003504290.1 PFAM: aminodeoxychorismate lyase; KEGG: dal:Dalk_3985 aminodeoxychorismate lyase YP_003504291.1 KEGG: mxa:MXAN_2664 hypothetical protein YP_003504292.1 PFAM: Ppx/GppA phosphatase; KEGG: ppd:Ppro_1779 Ppx/GppA phosphatase YP_003504293.1 KEGG: pca:Pcar_0273 hypothetical protein YP_003504294.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; PAS fold domain protein; PAS fold-4 domain protein; KEGG: wsu:WS0415 sensor kinase of two-component regulatory system; SMART: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; PAS domain containing protein YP_003504295.1 KEGG: ecf:ECH74115_4820 nickel transporter ATP- binding protein NikE; PFAM: ABC transporter related; SMART: AAA ATPase YP_003504296.1 KEGG: kpu:KP1_5192 nickel transport system ATP- binding component; PFAM: ABC transporter related; SMART: AAA ATPase YP_003504297.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dds:Ddes_1030 binding-protein-dependent transport systems inner membrane component YP_003504298.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_2401 nickel transporter permease NikB YP_003504299.1 KEGG: avi:Avi_7613 nickel ABC transporter periplasmic nickel-binding protein; TIGRFAM: nickel ABC transporter, periplasmic nickel- binding protein; PFAM: extracellular solute-binding protein family 5 YP_003504300.1 KEGG: sse:Ssed_1728 hypothetical protein YP_003504301.1 KEGG: gbm:Gbem_4036 flavocytochrome c YP_003504302.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; Twin-arginine translocation pathway, signal sequence; KEGG: acp:A2cp1_3684 fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003504303.1 KEGG: acp:A2cp1_0349 sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; 4-vinyl reductase 4VR; Activator of aromatic catabolism; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_003504304.1 PFAM: major facilitator superfamily MFS_1; KEGG: glo:Glov_0879 major facilitator superfamily MFS_1 YP_003504305.1 KEGG: sat:SYN_00385 hypothetical protein YP_003504306.1 KEGG: ank:AnaeK_1781 hypothetical protein YP_003504307.1 KEGG: glo:Glov_0385 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_003504308.1 SMART: PAC repeat-containing protein; ATP-binding region ATPase domain protein; PAS domain containing protein; TIGRFAM: PAS sensor protein; KEGG: pol:Bpro_0708 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein YP_003504309.1 KEGG: sat:SYN_02588 response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_003504310.1 KEGG: gbm:Gbem_3856 triphosphoribosyl-dephospho-CoA protein; PFAM: triphosphoribosyl-dephospho-CoA protein YP_003504311.1 KEGG: ppd:Ppro_1083 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; TIGRFAM: holo-ACP synthase CitX; PFAM: Apo-citrate lyase phosphoribosyl-dephospho- CoA transferase YP_003504312.1 TIGRFAM: citrate lyase, alpha subunit; KEGG: ppd:Ppro_1084 citrate lyase, alpha subunit; PFAM: Citrate lyase alpha subunit YP_003504313.1 KEGG: gem:GM21_3944 citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase YP_003504314.1 PFAM: protein of unknown function DUF296; KEGG: gbm:Gbem_3860 protein of unknown function DUF296 YP_003504315.1 KEGG: ppd:Ppro_1087 citrate lyase subunit gamma; TIGRFAM: citrate lyase acyl carrier protein; PFAM: Citrate lyase acyl carrier protein CitD YP_003504316.1 SMART: Citrate lyase ligase domain protein; TIGRFAM: citrate lyase ligase; cytidyltransferase- related domain protein; KEGG: gem:GM21_3947 citrate lyase ligase; PFAM: Citrate lyase ligase domain protein YP_003504317.1 PFAM: transposase mutator type; MULE transposase, conserved domain; KEGG: son:SO_0708 transposase mutator family protein YP_003504318.1 PFAM: Tellurite resistance methyltransferase, TehB, core; KEGG: dds:Ddes_0992 methyltransferase type 11 YP_003504319.1 KEGG: mmw:Mmwyl1_4086 TonB family protein; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein YP_003504320.1 KEGG: hypothetical protein YP_003504321.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pca:Pcar_0151 outer membrane receptor for ferrienterochelin and colicins YP_003504322.1 PFAM: major facilitator superfamily MFS_1; KEGG: eba:ebA725 putative MFS transporter YP_003504323.1 PFAM: major facilitator superfamily MFS_1; KEGG: wsu:WS1267 MFS family transporter YP_003504324.1 PFAM: major facilitator superfamily MFS_1; KEGG: wsu:WS1266 hypothetical protein YP_003504325.1 KEGG: wsu:WS1265 ABC transporter ATP- binding/permease protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003504326.1 KEGG: wsu:WS1264 ABC transporter ATP-binding protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003504327.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pau:PA14_55050 TonB-dependent receptor YP_003504328.1 KEGG: dar:Daro_1117 hypothetical protein YP_003504329.1 SMART: Tetratricopeptide repeat; KEGG: dde:Dde_2157 TPR repeat-containing protein YP_003504330.1 KEGG: dde:Dde_2156 TonB-like; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein YP_003504331.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dde:Dde_2155 biopolymer transport protein (ExbD2) YP_003504332.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_2154 biopolymer transport protein (ExbB)-like YP_003504333.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_2153 transport protein TolQ-like YP_003504334.1 KEGG: dde:Dde_2152 hypothetical protein YP_003504335.1 KEGG: dat:HRM2_20220 hypothetical protein YP_003504336.1 KEGG: dal:Dalk_0752 hypothetical protein YP_003504337.1 KEGG: dol:Dole_0610 exporter of the RND superfamily protein-like protein YP_003504338.1 KEGG: dds:Ddes_0430 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003504339.1 PFAM: Phosphoglycerate mutase; 6-phosphofructo-2- kinase; KEGG: dma:DMR_34760 6-phosphofructo-2- kinase/fructose-2,6-biphosphatase YP_003504340.1 PFAM: transposase mutator type; MULE transposase, conserved domain; KEGG: son:SO_0708 transposase mutator family protein YP_003504341.1 KEGG: dal:Dalk_3942 plasmid maintenance system antidote protein, XRE family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein YP_003504342.1 KEGG: sfu:Sfum_1442 killer suppression protein HigA, putative YP_003504344.1 KEGG: dat:HRM2_20570 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003504345.1 KEGG: hypothetical protein YP_003504346.1 KEGG: dat:HRM2_20550 sigma-54 dependent two component DNA-binding response regulator (fis family protein); PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase YP_003504347.1 PFAM: Aldehyde Dehydrogenase; KEGG: geo:Geob_3547 aldehyde dehydrogenase YP_003504348.1 PFAM: Protein of unknown function DUF2219; KEGG: sat:SYN_02063 outer membrane protein YP_003504350.1 KEGG: csa:Csal_1476 periplasmic phosphate binding protein YP_003504351.1 KEGG: dvm:DvMF_2566 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component YP_003504352.1 KEGG: dvm:DvMF_2567 phosphate ABC transporter, inner membrane subunit PstA; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component YP_003504353.1 TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: dde:Dde_2386 phosphate ABC transporter permease; SMART: AAA ATPase YP_003504354.1 KEGG: gem:GM21_0525 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003504355.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: wsu:WS0276 hypothetical protein YP_003504356.1 TIGRFAM:5- methyltetrahydropteroyltriglutamate/homocy steineS-methyltransferase; KEGG: pca:Pcar_0442 5- methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein YP_003504357.1 KEGG: sfu:Sfum_3937 hypothetical protein YP_003504358.1 PFAM: AMP-dependent synthetase and ligase; KEGG: glo:Glov_3416 acyl-CoA synthetase YP_003504359.1 KEGG: dat:HRM2_09850 ModA4; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1 YP_003504360.1 KEGG: csa:Csal_2676 molybdate ABC transporter permease; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003504361.1 TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; KEGG: atc:AGR_C_4645 molybdenum transport protein ModC; SMART: AAA ATPase YP_003504363.1 KEGG: sat:SYN_01899 IstB-like ATP binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003504364.1 PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2298 transposase IS4 family protein YP_003504365.1 KEGG: hypothetical protein YP_003504366.1 PFAM: histidine kinase dimerisation/phosphoacceptor; ATP-binding region ATPase domain protein; KEGG: gem:GM21_2263 PAS/PAC sensor signal transduction histidine kinase YP_003504367.1 KEGG: asa:ASA_2316 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003504368.1 KEGG: dat:HRM2_03400 ColR; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003504369.1 KEGG: dat:HRM2_03410 ColS; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003504370.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: cla:Cla_0430 biotin sulfoxide reductase YP_003504371.1 KEGG: ppr:PBPRB0079 putative biotin sulfoxide reductase (BisC) YP_003504373.1 PFAM: outer membrane porin; KEGG: spc:Sputcn32_3385 outer membrane porin YP_003504374.1 PFAM: major facilitator superfamily MFS_1; KEGG: eba:ebA725 putative MFS transporter YP_003504375.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_0934 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003504376.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: ppr:PBPRB0330 putative anaerobic dimethyl sulfoxide reductase, subunit A YP_003504377.1 KEGG: abc:ACICU_03635 transcriptional regulator; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003504379.1 KEGG: cjj:CJJ81176_1483 DNA-binding response regulator; PFAM: response regulator receiver; SMART: response regulator receiver YP_003504380.1 PFAM: cytochrome b5; KEGG: sfu:Sfum_3227 cytochrome b5 YP_003504381.1 PFAM: NLP/P60 protein; Sporulation domain protein; KEGG: pca:Pcar_1371 cell wall-associated hydrolase/invasion-associated protein YP_003504383.1 PFAM: flagellin domain protein; KEGG: pat:Patl_3088 flagellin-like YP_003504384.1 KEGG: mei:Msip34_0087 general secretion pathway protein H YP_003504385.1 KEGG: legume lectin family protein YP_003504386.1 KEGG: sfu:Sfum_2514 SAM-dependent methyltransferase; PFAM: tRNA methyltransferase complex GCD14 subunit YP_003504387.1 PFAM: PP-loop domain protein; phosphoadenosine phosphosulfate reductase; KEGG: dvm:DvMF_2330 PP-loop domain protein YP_003504388.1 PFAM: thiamineS protein YP_003504389.1 KEGG: ppd:Ppro_2161 hypothetical protein YP_003504390.1 PFAM: ferredoxin-dependent glutamate synthase; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; KEGG: ppd:Ppro_2160 ferredoxin-dependent glutamate synthase YP_003504391.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pca:Pcar_2600 glutamate synthase, alpha subunit-like YP_003504392.1 KEGG: pin:Ping_3424 exopolyphosphatase-related protein YP_003504393.1 KEGG: sfu:Sfum_3075 molybdopterin-guanine dinucleotide biosynthesis protein A YP_003504394.1 KEGG: sat:SYN_00289 molybdopterin-guanine dinucleotide biosynthesis protein B; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region YP_003504395.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: wsu:WS0626 sulfur transferase precursor YP_003504396.1 PFAM: Polysulphide reductase NrfD; KEGG: wsu:WS0707 molybdopterin oxidoreductase, membrane subunit YP_003504397.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: wsu:WS0708 molybdopterin oxidoreductase, iron- sulfur binding subunit YP_003504398.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: wsu:WS0709 thiosulfate reductase YP_003504399.1 KEGG: slo:Shew_0515 hypothetical protein YP_003504400.1 KEGG: sse:Ssed_1309 cytoplasmic chaperone TorD family protein YP_003504401.1 PFAM: Flavocytochrome c sulphide dehydrogenase flavin-binding; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: dar:Daro_3137 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit YP_003504402.1 KEGG: cps:CPS_0283 cytochrome c family protein YP_003504403.1 KEGG: sfr:Sfri_3554 cytochrome c family protein YP_003504405.1 KEGG: sat:SYN_02376 SSU ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20 YP_003504406.1 PFAM: glycosyl transferase family 9; KEGG: geo:Geob_2115 glycosyl transferase family 9 YP_003504407.1 KEGG: gur:Gura_2228 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp YP_003504408.1 PFAM: nitrogen regulatory protein P-II; KEGG: pca:Pcar_1500 regulatory protein P-II for glutamine synthetase YP_003504409.1 KEGG: mms:mma_1959 hypothetical protein YP_003504410.1 PFAM: Mammalian cell entry related domain protein; KEGG: sat:SYN_01688 hypothetical protein YP_003504411.1 KEGG: pfs:PFLU2236 putative ABC transport system, ATP-binding protein YP_003504412.1 PFAM: protein of unknown function DUF140; KEGG: sat:SYN_01690 ABC transporter permease protein YP_003504413.1 KEGG: pca:Pcar_0377 NifJ-like oxidoreductase, Fe-S subunit; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain YP_003504414.1 KEGG: dps:DP2705 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; Cache domain protein; SMART: chemotaxis sensory transducer YP_003504415.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pca:Pcar_0861 putative methyltransferase YP_003504416.1 PFAM: regulatory protein TetR; KEGG: dal:Dalk_4423 transcriptional regulator, TetR family YP_003504417.1 KEGG: aha:AHA_2800 amino acid ABC transporter, periplasmic amino acid-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor YP_003504418.1 PFAM: ABC-1 domain protein; KEGG: sun:SUN_2122 ABC transporter YP_003504419.1 KEGG: sun:SUN_2121 hypothetical protein YP_003504420.1 KEGG: dat:HRM2_23060 ATP-type transporter, ATP binding protein (ATPase); PFAM: ABC transporter related; SMART: AAA ATPase YP_003504421.1 KEGG: tdn:Suden_0210 hypothetical protein YP_003504422.1 KEGG: nam:NAMH_1064 mcp-signal transduction protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer YP_003504423.1 KEGG: geo:Geob_2932 PhoH family protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc YP_003504424.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: cff:CFF8240_0972 hypothetical protein YP_003504425.1 KEGG: cla:Cla_1046 hypothetical protein YP_003504426.1 KEGG: pca:Pcar_2541 periplasmic protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein YP_003504427.1 PFAM: heat shock protein Hsp20; KEGG: gsu:GSU0538 HSP20 family protein YP_003504428.1 TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; KEGG: aci:ACIAD3621 heat shock protein (HSP40), co- chaperone with DnaK; SMART: heat shock protein DnaJ domain protein YP_003504429.1 KEGG: sun:SUN_1561 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR YP_003504430.1 TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; KEGG: dal:Dalk_3434 ATP-dependent chaperone ClpB; SMART: AAA ATPase YP_003504431.1 KEGG: pcr:Pcryo_1124 sigma 70 (RpoD); TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein YP_003504432.1 PFAM: thioesterase superfamily protein; KEGG: pmr:PMI1691 thioesterase superfamilyl protein YP_003504433.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: biotin synthase; KEGG: gbm:Gbem_2053 biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein YP_003504434.1 KEGG: hypothetical protein YP_003504435.1 PFAM: SH3 type 3 domain protein; KEGG: cps:CPS_4212 putative general secretion pathway protein A YP_003504438.1 KEGG: pca:Pcar_1686 DNA-binding protein HU-beta, NS1(HU-1); PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_003504439.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; KEGG: pca:Pcar_1903 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding YP_003504440.1 KEGG: ftn:FTN_0673 3-methyladenine DNA glycosylase; PFAM: methyladenine glycosylase YP_003504441.1 PFAM: ribosomal L11 methyltransferase; methyltransferase small; KEGG: gsu:GSU3320 ribosomal protein L11 methyltransferase, putative YP_003504442.1 KEGG: aha:AHA_3491 hypothetical protein YP_003504444.1 KEGG: bba:Bd0798 hypothetical protein; PFAM: Catalase related subgroup; Catalase domain protein YP_003504445.1 KEGG: abu:Abu_0418 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver YP_003504446.1 KEGG: tdn:Suden_0283 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_003504447.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: abu:Abu_0420 two-component sensor histidine kinase; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein YP_003504448.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pca:Pcar_2449 GGDEF domain-containing protein; SMART: GGDEF domain containing protein YP_003504449.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ppr:PBPRA1807 putative transcriptional regulator YP_003504450.1 KEGG: geo:Geob_1535 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003504451.1 KEGG: sse:Ssed_2865 signal transduction histidine kinase-like protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein YP_003504452.1 PFAM: Thioredoxin domain; KEGG: gsu:GSU2957 thioredoxin family protein YP_003504453.1 KEGG: wsu:WS0772 sensor protein; PFAM: EAL domain protein; SMART: EAL domain protein YP_003504454.1 KEGG: wsu:WS0772 sensor protein; PFAM: EAL domain protein; SMART: EAL domain protein YP_003504455.1 TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; KEGG: gme:Gmet_3163 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB YP_003504456.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold domain protein; KEGG: pin:Ping_1203 sensor histidine kinase PAS domain-containing protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein YP_003504457.1 PFAM: protein of unknown function DUF343; KEGG: sfu:Sfum_3635 protein of unknown function DUF343 YP_003504458.1 KEGG: ppd:Ppro_2259 carbohydrate kinase, YjeF related protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain protein; protein of unknown function UPF0031 YP_003504459.1 PFAM: protein of unknown function UPF0079; KEGG: pca:Pcar_1005 hypothetical protein YP_003504462.1 KEGG: gur:Gura_1799 valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase YP_003504463.1 TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: dal:Dalk_0496 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_003504465.1 KEGG: dol:Dole_1512 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003504466.1 KEGG: geo:Geob_3085 hypothetical protein YP_003504467.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ppd:Ppro_1023 uroporphyrin-III C/tetrapyrrole methyltransferase YP_003504469.1 KEGG: hypothetical protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat YP_003504470.1 PFAM: ribonuclease H; KEGG: mxa:MXAN_5728 ribonuclease H YP_003504471.1 PFAM: protein of unknown function DUF164; KEGG: dvm:DvMF_0258 protein of unknown function DUF164 YP_003504472.1 PFAM: protein of unknown function DUF34; KEGG: gur:Gura_3988 hypothetical protein YP_003504473.1 KEGG: pca:Pcar_2678 RNA polymerase, sigma(70) factor; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein YP_003504474.1 TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; DNA primase catalytic core domain; TOPRIM domain protein; KEGG: gsu:GSU3090 DNA primase; SMART: zinc finger CHC2-family protein; Toprim sub domain protein YP_003504475.1 KEGG: maq:Maqu_0452 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_003504476.1 KEGG: sun:SUN_0162 sodium-driven multidrug efflux pump protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003504477.1 SMART: Exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: aeh:Mlg_2053 putative PAS/PAC sensor protein; PFAM: Exonuclease RNase T and DNA polymerase III YP_003504479.1 KEGG: glo:Glov_3529 C_GCAxxG_C_C family protein; TIGRFAM: C_GCAxxG_C_C family protein; PFAM: C_GCAxxG_C_C family protein YP_003504480.1 KEGG: tdn:Suden_0734 hypothetical protein YP_003504481.1 KEGG: lhk:LHK_02905 GreA; TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein YP_003504482.1 TIGRFAM: exodeoxyribonuclease VII, large subunit; KEGG: sgl:SG1750 exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type YP_003504483.1 PFAM: Septum formation initiator; KEGG: lip:LI0372 hypothetical protein YP_003504484.1 KEGG: sfu:Sfum_3633 conserved hypothetical GTP- binding protein YP_003504485.1 KEGG: wbr:WGLp184 hypothetical protein; TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core YP_003504486.1 TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: pca:Pcar_1305 tRNA delta(2)- isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_003504487.1 KEGG: fph:Fphi_0261 DNA mismatch repair enzyme with ATPase activity; TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein YP_003504488.1 KEGG: gme:Gmet_1216 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit YP_003504489.1 PFAM: DSBA oxidoreductase; KEGG: nis:NIS_1021 hypothetical protein YP_003504490.1 KEGG: dal:Dalk_1770 isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase YP_003504491.1 KEGG: gem:GM21_3756 lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II YP_003504492.1 SMART: AICARFT/IMPCHase bienzyme formylation region; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; KEGG: glo:Glov_2760 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein YP_003504493.1 KEGG: dps:DP2188 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase YP_003504494.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: pca:Pcar_2230 phosphoribosylcarboxyaminoimidazole; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase YP_003504495.1 PFAM: SUA5/yciO/yrdC domain; KEGG: nse:NSE_0579 Sua5/YciO/YrdC/YwlC family protein YP_003504496.1 KEGG: ade:Adeh_1696 cytochrome c3 YP_003504499.1 KEGG: vpa:VP0963 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003504500.1 KEGG: pol:Bpro_4337 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; PFAM: ABC transporter related; SMART: AAA ATPase YP_003504501.1 KEGG: gme:Gmet_0057 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M) YP_003504502.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: azo:azo3744 HD-domain-containing protein; SMART: metal-dependent phosphohydrolase HD region YP_003504503.1 KEGG: geo:Geob_0562 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003504504.1 KEGG: ppd:Ppro_2970 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003504505.1 KEGG: chromosome assembly protein ; K06675 structural maintenance of chromosome 4 YP_003504507.1 SMART: Rhodanese domain protein; KEGG: geo:Geob_1336 rhodanese domain-containing protein YP_003504508.1 PFAM: phosphate-selective porin O and P; KEGG: gur:Gura_0451 phosphate-selective porin O and P YP_003504510.1 KEGG: gur:Gura_0455 hypothetical protein YP_003504511.1 KEGG: gur:Gura_0456 hypothetical protein YP_003504512.1 PFAM: transposase mutator type; MULE transposase, conserved domain; KEGG: glo:Glov_3450 transposase mutator type YP_003504513.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; Twin-arginine translocation pathway, signal sequence; KEGG: glo:Glov_1164 formate dehydrogenase YP_003504514.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aeh:Mlg_0634 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003504515.1 PFAM: Polysulphide reductase NrfD; KEGG: cco:CCC13826_1874 polysulphide reductase, NrfD YP_003504516.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: geo:Geob_1345 Rieske (2Fe-2S) domain protein YP_003504517.1 PFAM: Cytochrome b/b6 domain; KEGG: glo:Glov_1196 cytochrome b/b6 domain YP_003504518.1 KEGG: gur:Gura_0460 hypothetical protein YP_003504519.1 KEGG: vfi:VF_A0099 glutamate synthase YP_003504520.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; helix-turn-helix- domain containing protein AraC type; KEGG: mxa:MXAN_5899 ADA regulatory protein; SMART: Helix-turn-helix, AraC domain YP_003504521.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dat:HRM2_32950 putative permease of the drug/metabolite transporter (DMT) superfamily YP_003504522.1 KEGG: glo:Glov_1379 type I citrate synthase; PFAM: Citrate synthase YP_003504523.1 KEGG: mca:MCA2223 cyclopropane fatty acyl phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12 YP_003504524.1 PFAM: protein of unknown function DUF195; KEGG: wol:WD0251 hypothetical protein YP_003504526.1 KEGG: cps:CPS_4177 hypothetical protein YP_003504527.1 PFAM: Auxin Efflux Carrier; KEGG: gur:Gura_4411 auxin efflux carrier YP_003504528.1 KEGG: glo:Glov_1923 cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase YP_003504529.1 PFAM: protein of unknown function DUF214; KEGG: gsu:GSU1774 cell division ABC transporter, permease protein FtsX, putative YP_003504530.1 PFAM: Peptidase M23; KEGG: glo:Glov_1921 peptidase M23 YP_003504531.1 SMART: peptidase S41; PDZ/DHR/GLGF domain protein; TIGRFAM: carboxyl-terminal protease; KEGG: geo:Geob_2654 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein YP_003504532.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: pca:Pcar_1672 hypothetical protein YP_003504533.1 TIGRFAM: metalloendopeptidase, glycoprotease family; KEGG: hap:HAPS_1935 O-sialoglycoprotein endopeptidase; PFAM: peptidase M22 glycoprotease YP_003504534.1 PFAM: dihydrouridine synthase DuS; KEGG: bba:Bd0136 transcription regulator homolog YacF YP_003504535.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: gbm:Gbem_3786 pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_003504536.1 KEGG: dat:HRM2_10390 hypothetical protein YP_003504537.1 KEGG: mmw:Mmwyl1_0767 RNA-binding S1 domain- containing protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold YP_003504538.1 KEGG: mmb:Mmol_2091 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003504539.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mms:mma_0703 diguanylate cyclase; SMART: GGDEF domain containing protein YP_003504540.1 KEGG: scl:sce0169 putative peptidase; PFAM: peptidase S41; SMART: PDZ/DHR/GLGF domain protein; peptidase S41 YP_003504541.1 PFAM: regulatory protein TetR; KEGG: hch:HCH_06796 transcriptional regulator YP_003504542.1 KEGG: glo:Glov_0122 4Fe-4S ferredoxin, iron-sulfur binding protein YP_003504544.1 PFAM: carboxyl transferase; KEGG: gbm:Gbem_0335 carboxyl transferase YP_003504546.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: ppd:Ppro_3082 biotin/lipoyl attachment domain- containing protein YP_003504547.1 TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; KEGG: dat:HRM2_06280 OadB1; PFAM: Na+transporting methylmalonyl- CoA/oxaloacetate decarboxylase beta subunit YP_003504548.1 PFAM: regulatory protein TetR; KEGG: cps:CPS_1358 TetR family transcriptional regulator YP_003504549.1 PFAM: aldo/keto reductase; KEGG: reu:Reut_A3382 aldo/keto reductase YP_003504550.1 PFAM: NADPH-dependent FMN reductase; KEGG: geo:Geob_0527 NADPH-dependent FMN reductase YP_003504551.1 TIGRFAM: chorismate synthase; KEGG: cja:CJA_1949 chorismate synthase; PFAM: chorismate synthase YP_003504552.1 PFAM: oxidoreductase molybdopterin binding; KEGG: rpa:RPA1731 molybdopterin oxidoreductase YP_003504553.1 PFAM: protein of unknown function DUF190; KEGG: bja:bll2637 hypothetical protein YP_003504554.1 KEGG: mca:MCA1973 CrcB protein domain-containing protein; TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein YP_003504555.1 KEGG: gur:Gura_3767 hypothetical protein YP_003504556.1 KEGG: sfu:Sfum_3223 heavy metal translocating P- type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase YP_003504557.1 SMART: peptidase S16 lon domain protein; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: geo:Geob_0904 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5 YP_003504558.1 KEGG: lpc:LPC_1655 small HspC2 heat shock protein YP_003504559.1 KEGG: gsu:GSU0859 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase YP_003504560.1 PFAM: protein of unknown function DUF52; KEGG: afw:Anae109_1268 hypothetical protein YP_003504562.1 KEGG: dol:Dole_1271 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003504563.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: dma:DMR_39180 response regulator receiver protein; SMART: GGDEF domain containing protein; response regulator receiver YP_003504564.1 PFAM: Na+H+ antiporter NhaB; Citrate transporter; KEGG: dma:DMR_38830 Na+/H+ antiporter YP_003504565.1 KEGG: spl:Spea_4098 molybdopterin-guanine dinucleotide biosynthesis protein B; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV YP_003504566.1 PFAM: molybdopterin binding domain; KEGG: dat:HRM2_07090 putative molybdopterin biosynthesis protein MoeA YP_003504567.1 KEGG: nam:NAMH_0492 sulfide dehydrogenase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003504568.1 KEGG: sat:SYN_02150 putative cytoplasmic protein YP_003504569.1 TIGRFAM: RNA modification enzyme, MiaB family; tRNA- i(6)A37 thiotransferase enzyme MiaB; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: gur:Gura_3127 RNA modification protein; SMART: Elongator protein 3/MiaB/NifB YP_003504570.1 PFAM: glycosyl transferase family 9; KEGG: bxe:Bxe_A3715 hypothetical protein YP_003504571.1 KEGG: spe:Spro_4825 ADP-L-glycero-D-mannoheptose-6- epimerase; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4- dehydrorhamnose reductase YP_003504572.1 KEGG: abu:Abu_1797 ADP-heptose synthase; TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: PfkB domain protein; cytidylyltransferase YP_003504575.1 PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: bpy:Bphyt_6956 D-lactate dehydrogenase (cytochrome) YP_003504576.1 TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: dps:DP2808 4-hydroxythreonine-4-phosphate dehydrogenase PdxA; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_003504577.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: hch:HCH_06103 dimethyladenosine transferase; SMART: ribosomal RNA adenine methylase transferase YP_003504578.1 SMART: Exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: hha:Hhal_1902 putative PAS/PAC sensor protein; PFAM: Exonuclease RNase T and DNA polymerase III YP_003504579.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: pca:Pcar_0737 acetyl-CoA carboxylase, carboxyl transferase, beta subunit YP_003504580.1 TIGRFAM: FolC bifunctional protein; KEGG: vfi:VF_1694 bifunctional folylpolyglutamate synthase/dihydrofolate synthase; PFAM: Mur ligase middle domain protein YP_003504581.1 KEGG: sat:SYN_01607 organic solvent tolerance protein YP_003504583.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: ank:AnaeK_1105 phosphoesterase RecJ domain protein YP_003504584.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sun:SUN_1757 rubredoxin YP_003504585.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: wsu:WS0163 putative flavoprotein YP_003504586.1 PFAM: transposase mutator type; MULE transposase, conserved domain; KEGG: glo:Glov_3450 transposase mutator type YP_003504588.1 KEGG: dde:Dde_2418 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003504590.1 KEGG: pca:Pcar_0325 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003504591.1 KEGG: geo:Geob_2804 phenylacetate--CoA ligase YP_003504592.1 KEGG: sfu:Sfum_0383 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003504593.1 KEGG: gsu:GSU1731 branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003504594.1 PFAM: inner-membrane translocator; KEGG: dma:DMR_11370 ABC transporter permease protein YP_003504595.1 PFAM: inner-membrane translocator; KEGG: sfu:Sfum_4070 inner-membrane translocator YP_003504596.1 PFAM: amino acid-binding ACT domain protein; KEGG: gsu:GSU1736 ACT domain-containing protein YP_003504597.1 KEGG: pca:Pcar_1569 coenzyme F390 synthetase YP_003504598.1 PFAM: glycosyl transferase family 39; KEGG: gsu:GSU2555 melittin resistance protein, putative YP_003504599.1 PFAM: lipid A biosynthesis domain protein; KEGG: acp:A2cp1_3503 lipid A biosynthesis domain protein YP_003504600.1 PFAM: glycosyl transferase family 2; KEGG: pca:Pcar_1271 glycosyltransferase YP_003504601.1 KEGG: gsu:GSU0940 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter YP_003504602.1 PFAM: protein of unknown function DUF178; KEGG: gbm:Gbem_1564 protein of unknown function DUF178 YP_003504603.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: geo:Geob_1857 tRNA/rRNA methyltransferase (SpoU) YP_003504604.1 KEGG: gsu:GSU0187 hypothetical protein YP_003504605.1 KEGG: pct:PC1_1183 iojap-like protein; TIGRFAM: iojap-like protein; PFAM: Iojap-related protein YP_003504606.1 TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; KEGG: spl:Spea_3146 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_003504607.1 KEGG: nam:NAMH_0807 gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase YP_003504608.1 SMART: PUA domain containing protein; TIGRFAM: glutamate 5-kinase; KEGG: gur:Gura_4132 gamma-glutamyl kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein YP_003504609.1 KEGG: pca:Pcar_0423 transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_003504610.1 TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; KEGG: gsu:GSU1871 ribonucleotide-diphosphate reductase subunit alpha; PFAM: Ribonucleotide reductase large subunit domain protein; ribonucleotide reductase large subunit YP_003504612.1 PFAM: glycosyl transferase group 1; KEGG: dvu:DVU0561 glycosyl transferase, group 1 family protein YP_003504613.1 PFAM: glycosyl transferase group 1; KEGG: dvm:DvMF_1098 glycosyl transferase group 1 YP_003504614.1 PFAM: glycosyl transferase family 9; KEGG: dvu:DVU0998 heptosyltransferase family protein YP_003504615.1 PFAM: Peptidase M23; KEGG: pca:Pcar_2472 metalloendopeptidase-like membrane protein YP_003504616.1 PFAM: SNARE associated Golgi protein; KEGG: abu:Abu_2024 hypothetical protein YP_003504617.1 KEGG: gme:Gmet_0942 DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein YP_003504618.1 PFAM: ATP-NAD/AcoX kinase; KEGG: geo:Geob_3461 ATP-NAD/AcoX kinase YP_003504619.1 TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: gur:Gura_2037 hemolysin A; SMART: RNA-binding S4 domain protein YP_003504620.1 KEGG: gsu:GSU0686 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein YP_003504621.1 PFAM: Polyprenyl synthetase; KEGG: glo:Glov_2183 polyprenyl synthetase YP_003504622.1 KEGG: bba:Bd0198 exodeoxyribonuclease VII, small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit YP_003504623.1 KEGG: gsu:GSU1111 hypothetical protein; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein YP_003504624.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dma:DMR_19140 anti-sigma factor antagonist family protein YP_003504625.1 KEGG: pca:Pcar_1874 anti-anti-sigma regulatory factor; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS YP_003504626.1 PFAM: type IV pilus assembly PilZ; KEGG: cja:CJA_0915 hypothetical protein YP_003504627.1 KEGG: afe:Lferr_1029 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003504628.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: lpc:LPC_0841 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_003504630.1 KEGG: sat:SYN_00628 ferredoxin; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003504631.1 KEGG: pca:Pcar_0265 NADH:ubiquinone oxidoreductase, RnfA subunit-like; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit YP_003504632.1 KEGG: pca:Pcar_0260 SoxR-reducing system protein RsxE; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit YP_003504633.1 KEGG: pca:Pcar_0261 NADH:ubiquinone oxidoreductase, RnfG subunit-like; TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein YP_003504634.1 KEGG: pca:Pcar_0262 NADH:ubiquinone oxidoreductase, RnfD subunit-like; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein YP_003504635.1 KEGG: sat:SYN_01664 electron transport complex protein, NADH-binding subunit; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003504636.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: glo:Glov_1747 CMP/dCMP deaminase zinc-binding YP_003504637.1 KEGG: slo:Shew_1185 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; Orn/Lys/Arg decarboxylase major region; aromatic amino acid beta- eliminating lyase/threonine aldolase YP_003504638.1 TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; KEGG: pca:Pcar_1441 ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase YP_003504639.1 KEGG: gbm:Gbem_3519 quinolinate synthetase complex, A subunit; TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A YP_003504640.1 PFAM: metallophosphoesterase; KEGG: gur:Gura_1101 metallophosphoesterase YP_003504641.1 SMART: metal-dependent phosphohydrolase HD region; KH domain protein; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; KEGG: geo:Geob_3590 RNA binding metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; K Homology, type 1, subgroup YP_003504642.1 KEGG: gsu:GSU1136 5-formyltetrahydrofolate cyclo- ligase family protein; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_003504643.1 KEGG: glo:Glov_2509 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_003504645.1 KEGG: cja:CJA_0292 putative conserved hypothetical protein TIGR02449 YP_003504646.1 KEGG: afe:Lferr_0200 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_3; SMART: Tetratricopeptide repeat YP_003504647.1 KEGG: sat:SYN_03523 pyruvate formate-lyase activating enzyme; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein YP_003504648.1 KEGG: glo:Glov_3259 LAO/AO transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein YP_003504649.1 KEGG: glo:Glov_3260 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12- binding domain protein YP_003504650.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: ank:AnaeK_0269 biotin/lipoyl attachment domain-containing protein YP_003504651.1 PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: mxa:MXAN_1111 propionyl-CoA carboxylase, alpha subunit YP_003504652.1 PFAM: carboxyl transferase; KEGG: mxa:MXAN_1113 propionyl-CoA carboxylase, beta subunit YP_003504653.1 PFAM: purine or other phosphorylase family 1; KEGG: pca:Pcar_3117 methylthioadenosine nucleosidase YP_003504654.1 KEGG: gme:Gmet_0423 radical SAM family protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003504655.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: ank:AnaeK_2769 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_003504656.1 PFAM: Lytic transglycosylase catalytic; KEGG: dvm:DvMF_1036 lytic transglycosylase catalytic YP_003504657.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: mmw:Mmwyl1_2290 iron-containing alcohol dehydrogenase YP_003504658.1 KEGG: slo:Shew_0278 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV YP_003504659.1 KEGG: dal:Dalk_0592 hypothetical protein YP_003504660.1 PFAM: TrkA-C domain protein; TrkA-N domain protein; KEGG: pca:Pcar_0177 K+ transport systems, NAD- binding component YP_003504661.1 PFAM: sodium/hydrogen exchanger; KEGG: pca:Pcar_0178 Na+/H+ antiporter YP_003504662.1 PFAM: MscS Mechanosensitive ion channel; KEGG: cvi:CV_2385 integral membrane protein YP_003504663.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pfl:PFL_2417 amino acid transporter LysE YP_003504664.1 PFAM: sodium:neurotransmitter symporter; KEGG: dps:DP0827 sodium-dependent transporter YP_003504665.1 PFAM: nitroreductase; KEGG: gur:Gura_1241 nitroreductase YP_003504666.1 PFAM: helix-turn-helix HxlR type; KEGG: dde:Dde_1352 putative transcriptional regulator YP_003504667.1 KEGG: dde:Dde_2809 hypothetical protein YP_003504668.1 KEGG: pmy:Pmen_4226 MerR family transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR YP_003504669.1 KEGG: tgr:Tgr7_2810 heavy metal translocating P- type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase YP_003504670.1 KEGG: pca:Pcar_2183 transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR YP_003504671.1 KEGG: glo:Glov_3541 flavocytochrome c YP_003504672.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; Twin-arginine translocation pathway, signal sequence; KEGG: shm:Shewmr7_2787 twin-arginine translocation pathway signal YP_003504673.1 PFAM: outer membrane porin; KEGG: sbm:Shew185_1155 outer membrane porin YP_003504674.1 KEGG: rfr:Rfer_2360 hypothetical protein YP_003504675.1 PFAM: Linocin_M18 bacteriocin protein; KEGG: dma:DMR_17160 putative bacteriocin YP_003504676.1 TIGRFAM: L-asparaginase, type II; KEGG: pct:PC1_0996 L-asparaginase, type II; PFAM: Asparaginase/glutaminase YP_003504677.1 TIGRFAM: threonyl-tRNA synthetase; KEGG: gur:Gura_2628 threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD YP_003504678.1 KEGG: pha:PSHAa1397 translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; PFAM: Translation initiation factor 3-like YP_003504679.1 KEGG: dps:DP1426 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35 YP_003504680.1 KEGG: lip:LI0214 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20 YP_003504681.1 KEGG: hypothetical protein YP_003504682.1 TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; KEGG: gem:GM21_2226 phenylalanyl-tRNA synthetase, alpha subunit; PFAM: Phenylalanyl-tRNA synthetase, class IIc-like; aminoacyl tRNA synthetase class II domain protein YP_003504683.1 KEGG: sat:SYN_01723 phenylalanyl-tRNA synthetase beta chain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit YP_003504684.1 PFAM: Protein of unknown function DUF2318, membrane; KEGG: gem:GM21_3166 hypothetical protein YP_003504685.1 PFAM: protein of unknown function DUF214; KEGG: dma:DMR_19600 putative ABC transporter permease protein YP_003504686.1 KEGG: dma:DMR_19590 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003504687.1 KEGG: gur:Gura_3741 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003504688.1 KEGG: gsu:GSU1320 sigma-54 dependent DNA-binding response regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase YP_003504689.1 SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: gme:Gmet_1014 peptidase S1C, Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_003504690.1 KEGG: ppu:PP_1429 sigma E regulatory protein, MucB/RseB YP_003504691.1 KEGG: bch:Bcen2424_1875 putative transmembrane anti- sigma factor YP_003504692.1 KEGG: mpt:Mpe_A0642 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein YP_003504693.1 KEGG: hypothetical protein; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap YP_003504696.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: pca:Pcar_1050 peptidyl-prolyl cis-trans isomerase YP_003504697.1 PFAM: N-6 DNA methylase; KEGG: psa:PST_0252 type I restriction-modification system, M subunit YP_003504698.1 KEGG: dvu:DVU1708 hypothetical protein YP_003504699.1 PFAM: restriction modification system DNA specificity domain; KEGG: sfr:Sfri_2607 restriction modification system DNA specificity subunit YP_003504700.1 KEGG: psa:PST_0248 type I restriction-modification system endonuclease; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase YP_003504701.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: kpn:KPN_pKPN4p07083 putative transposase YP_003504702.1 KEGG: dal:Dalk_1289 hypothetical protein YP_003504704.1 KEGG: pca:Pcar_1326 amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase YP_003504705.1 KEGG: afw:Anae109_4362 phosphoribosylformylglycinamidine synthase II; TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_003504706.1 TIGRFAM: phosphoribosylformylglycinamidine synthase I; KEGG: ade:Adeh_3841 phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ domain protein glutamine amidotransferase YP_003504707.1 KEGG: bmt:BSUIS_A0880 phosphoribosylformylglycinamidine synthase subunit PurS; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS YP_003504708.1 KEGG: abu:Abu_1358 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003504709.1 PFAM: CheC domain protein; KEGG: ppd:Ppro_0086 CheC, inhibitor of MCP methylation YP_003504710.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ppd:Ppro_0085 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein YP_003504711.1 PFAM: Peptidase M23; KEGG: oan:Oant_1405 hypothetical protein YP_003504712.1 KEGG: dol:Dole_1066 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding YP_003504713.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; KEGG: ppd:Ppro_0549 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_003504714.1 PFAM: AMMECR1 domain protein; KEGG: geo:Geob_3548 AMMECR1 domain protein YP_003504715.1 KEGG: hypothetical protein; K00236 succinate dehydrogenase (ubiquinone) cytochrome b subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit YP_003504717.1 KEGG: nme:NMB0950 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003504718.1 KEGG: abb:ABBFA_000761 succinate dehydrogenase iron- sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_003504720.1 PFAM: metallophosphoesterase; KEGG: bph:Bphy_5078 metallophosphoesterase YP_003504721.1 KEGG: pfl:PFL_1726 putative lipoprotein YP_003504722.1 KEGG: gsu:GSU2813 cytochrome c551 peroxidase; PFAM: Di-haem cytochrome c peroxidase YP_003504723.1 KEGG: dde:Dde_1350 RarD protein; TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane YP_003504724.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hypothetical protein LOC100267823 YP_003504725.1 PFAM: acyl-ACP thioesterase; KEGG: dal:Dalk_2643 acyl-ACP thioesterase YP_003504726.1 PFAM: protein of unknown function DUF558; KEGG: cja:CJA_1939 conserved hypothetical protein TIGR00046 YP_003504727.1 KEGG: tdn:Suden_0208 response regulator receiver domain-containing protein; PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: response regulator receiver; protein phosphatase 2C domain protein YP_003504728.1 KEGG: glo:Glov_1559 hypothetical protein YP_003504729.1 KEGG: tdn:Suden_1881 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003504730.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; Cache type 2 domain protein; PAS fold domain protein; KEGG: tdn:Suden_1941 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein YP_003504731.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: abu:Abu_1136 hypothetical protein YP_003504732.1 KEGG: gem:GM21_0424 hypothetical protein YP_003504733.1 KEGG: cla:Cla_1119 hypothetical protein YP_003504734.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-3 domain protein; KEGG: wsu:WS1861 sensor kinase of two-component regulatory system; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein YP_003504736.1 KEGG: neu:NE2392 Na(+)-translocating NADH-quinone reductase subunit F; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit F; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; Oxidoreductase FAD-binding domain protein YP_003504737.1 KEGG: psa:PST_2651 Na(+)-translocating NADH-quinone reductase subunit E; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit E; PFAM: RnfA-Nqr electron transport subunit YP_003504738.1 KEGG: csa:Csal_1572 Na(+)-translocating NADH- quinone reductase subunit D; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit D; PFAM: RnfA-Nqr electron transport subunit YP_003504739.1 KEGG: abo:ABO_1034 Na(+)-translocating NADH-quinone reductase subunit C; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit C; PFAM: FMN-binding domain protein YP_003504740.1 KEGG: neu:NE2396 Na(+)-translocating NADH-quinone reductase subunit B; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit B; PFAM: NQR2 and RnfD family protein YP_003504741.1 KEGG: ngo:NGO1413 Na(+)-translocating NADH-quinone reductase subunit A; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit A; PFAM: Na-translocating NADH-quinone reductase subunit A YP_003504742.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: tdn:Suden_0400 hypothetical protein YP_003504743.1 KEGG: gbm:Gbem_0152 hypothetical protein YP_003504744.1 KEGG: glo:Glov_1037 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003504745.1 PFAM: cobalamin synthesis protein P47K; KEGG: glo:Glov_1036 cobalamin synthesis protein P47K YP_003504746.1 PFAM: Domain of unknown function DUF1858; KEGG: glo:Glov_1035 domain of unknown function DUF1858 YP_003504747.1 KEGG: dat:HRM2_10610 AcnA; TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein YP_003504748.1 KEGG: dma:DMR_08790 hypothetical protein YP_003504749.1 KEGG: abu:Abu_0086 EAL/GGDEF domain-containing protein; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003504750.1 PFAM: DHHA2 domain protein; CBS domain containing protein; KEGG: ppd:Ppro_0753 putative manganese-dependent inorganic pyrophosphatase; SMART: CBS domain containing protein YP_003504751.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; Redoxin domain protein; KEGG: dde:Dde_2560 3-Cys thioredoxin peroxidase / 1- Cys peroxiredoxin YP_003504752.1 PFAM: glycosyl transferase group 1; KEGG: hch:HCH_01609 glycosyltransferase YP_003504753.1 KEGG: pca:Pcar_0140 ATP-dependent transcriptional regulator YP_003504754.1 KEGG: hypothetical protein YP_003504755.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sfr:Sfri_1819 glycine betaine transporter periplasmic subunit YP_003504756.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP0207 glycine betaine/L-proline transport system permease protein (ProW) YP_003504757.1 TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; KEGG: sbm:Shew185_2028 glycine betaine/L-proline ABC transporter, ATPase subunit; SMART: AAA ATPase YP_003504758.1 KEGG: bba:Bd1705 putative 2-nitropropane dioxygenase YP_003504759.1 PFAM: small multidrug resistance protein; KEGG: eta:ETA_33380 putative multidrug resistance protein YP_003504760.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mca:MCA0119 acetyltransferase YP_003504761.1 KEGG: dal:Dalk_0879 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003504762.1 KEGG: dal:Dalk_0878 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003504763.1 SMART: Calcium-binding EF-hand-containing protein; KEGG: ppd:Ppro_2224 signal transduction protein YP_003504764.1 PFAM: protein of unknown function DUF123; KEGG: rpb:RPB_0747 hypothetical protein YP_003504765.1 PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: dps:DP2578 hypothetical protein YP_003504766.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: glo:Glov_3708 tautomerase YP_003504767.1 KEGG: dvm:DvMF_0822 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein YP_003504768.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: dat:HRM2_42600 cupin domain family protein YP_003504769.1 PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: ppr:PBPRA1402 hypothetical protein YP_003504770.1 KEGG: noc:Noc_0709 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_003504771.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: noc:Noc_0710 tripartite ATP-independent periplasmic transporter DctQ YP_003504772.1 PFAM: Radical SAM domain protein; KEGG: pca:Pcar_1369 hypothetical protein YP_003504773.1 KEGG: hch:HCH_01435 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003504774.1 KEGG: dal:Dalk_1127 hypothetical protein YP_003504775.1 KEGG: pat:Patl_0225 osmolarity response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003504776.1 KEGG: dal:Dalk_0196 extracellular solute-binding protein family 3 YP_003504777.1 KEGG: swp:swp_2315 PAS domain protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein YP_003504778.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; KEGG: wsu:WS0415 sensor kinase of two-component regulatory system; SMART: response regulator receiver; PAS domain containing protein; ATP-binding region ATPase domain protein YP_003504779.1 KEGG: dps:DP2857 metal-dependent aminohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003504780.1 TIGRFAM: amidase, hydantoinase/carbamoylase family; KEGG: ccv:CCV52592_2070 N-carbamoyl-L-amino acid hydrolase (L-carbamoylase); PFAM: peptidase M20; peptidase dimerisation domain protein YP_003504781.1 KEGG: pmr:PMI3675 C4-dicarboxylate transporter; TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier-like; Na+/H+ antiporter NhaC-like; Citrate transporter; TRAP C4- dicarboxylate transport system permease DctM subunit YP_003504782.1 KEGG: sfu:Sfum_2438 aspartate ammonia-lyase; TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase; Fumarase C-like YP_003504783.1 KEGG: gur:Gura_1313 two component, sigma-54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase YP_003504784.1 KEGG: gem:GM21_1037 histidine kinase; PFAM: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; SMART: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3 YP_003504785.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; PAS fold-4 domain protein; KEGG: afw:Anae109_3857 putative PAS/PAC sensor protein; SMART: PAS domain containing protein YP_003504786.1 KEGG: glo:Glov_2655 respiratory nitrate reductase, gamma subunit; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit YP_003504787.1 KEGG: eba:ebA6283 chaperone YP_003504788.1 KEGG: ajs:Ajs_0437 respiratory nitrate reductase beta subunit; TIGRFAM: nitrate reductase, beta subunit YP_003504789.1 KEGG: glo:Glov_2652 nitrate reductase, alpha subunit; TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region YP_003504791.1 PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_1953 nitrate/nitrite transporter YP_003504792.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dal:Dalk_0342 TonB-dependent receptor YP_003504793.1 PFAM: Methyltransferase type 12; Methyltransferase type 11; O-methyltransferase family 2; KEGG: dds:Ddes_0428 methyltransferase type 12 YP_003504794.1 KEGG: nis:NIS_1591 sulfonate/nitrate ABC transporter, substrate-binding protein YP_003504795.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dds:Ddes_0426 binding-protein-dependent transport systems inner membrane component YP_003504796.1 KEGG: pca:Pcar_0855 ABC-type transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase YP_003504797.1 KEGG: smd:Smed_4732 helix-turn-helix domain- containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003504798.1 PFAM: NLPA lipoprotein; KEGG: bbr:BB4519 hypothetical protein YP_003504799.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcm:Bcenmc03_1019 binding-protein-dependent transport systems inner membrane component YP_003504800.1 KEGG: aha:AHA_0915 DL-methionine transporter ATP- binding subunit; PFAM: ABC transporter related; NIL domain; SMART: AAA ATPase YP_003504801.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pca:Pcar_2856 hypothetical protein YP_003504802.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: gsu:GSU2311 YeeE/YedE family protein YP_003504803.1 SMART: Rhodanese domain protein; KEGG: dol:Dole_2883 rhodanese domain-containing protein YP_003504804.1 KEGG: scl:sce1210 hypothetical protein; PFAM: aminotransferase class V YP_003504805.1 KEGG: dps:DP2324 transcription regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003504806.1 PFAM: Na+/H+ antiporter NhaC-like; TRAP C4- dicarboxylate transport system permease DctM subunit; KEGG: ypy:YPK_0600 Na+/H+ antiporter NhaC YP_003504807.1 PFAM: putative esterase; phospholipase/Carboxylesterase; KEGG: pmu:PM1451 XynC YP_003504809.1 PFAM: cyclic nucleotide-binding; KEGG: nis:NIS_0011 transcriptional regulator YP_003504810.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: eca:ECA0910 putative flavoprotein subunit of a reductase YP_003504811.1 KEGG: sse:Ssed_0297 flavocytochrome c YP_003504812.1 PFAM: outer membrane porin; KEGG: sbm:Shew185_1155 outer membrane porin YP_003504813.1 PFAM: major facilitator superfamily MFS_1; KEGG: gbm:Gbem_4035 major facilitator superfamily MFS_1 YP_003504814.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: bpy:Bphyt_5813 major facilitator superfamily MFS_1 YP_003504815.1 PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2298 transposase IS4 family protein YP_003504816.1 KEGG: bxe:Bxe_B2020 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003504817.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: gur:Gura_3514 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_003504818.1 PFAM: helix-turn-helix HxlR type; KEGG: ppd:Ppro_1109 HxlR family transcriptional regulator YP_003504819.1 PFAM: outer membrane porin; KEGG: sbm:Shew185_1155 outer membrane porin YP_003504820.1 KEGG: rfr:Rfer_3091 hypothetical protein YP_003504821.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eba:ebA5630 molybdenum enzyme, medium subunit,related to phenylacetyl-CoA: acceptor oxidoreductase YP_003504822.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: eba:ebA5622 molybdenum enzyme, large subunit,related to phenylacetyl-CoA: acceptor oxidoreductase YP_003504823.1 KEGG: ypy:YPK_1334 transcriptional regulator; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003504824.1 KEGG: rhi:NGR_b21910 transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003504825.1 TIGRFAM: 5-methylthioribose kinase; KEGG: hypothetical protein; PFAM: aminoglycoside phosphotransferase YP_003504826.1 KEGG: pfo:Pfl01_2338 ABC transporter-like; PFAM: ABC transporter related; SMART: AAA ATPase YP_003504827.1 PFAM: inner-membrane translocator; KEGG: pfo:Pfl01_2339 inner-membrane translocator YP_003504828.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: avi:Avi_5162 ABC transporter binding protein YP_003504829.1 TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; KEGG: gur:Gura_4322 aIF-2BI family translation initiation factor; PFAM: initiation factor 2B related YP_003504830.1 PFAM: RbsD or FucU transport; KEGG: hit:NTHI0867 fucose operon protein FucU YP_003504831.1 PFAM: class II aldolase/adducin family protein; KEGG: pca:Pcar_3030 L-fuculose-1-phosphate aldolase YP_003504832.1 PFAM: aldo/keto reductase; KEGG: pca:Pcar_1733 aldo/keto reductase family oxidoreductase YP_003504833.1 KEGG: glo:Glov_0597 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_003504834.1 KEGG: geo:Geob_2214 arsenical-resistance protein; TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter YP_003504835.1 KEGG: dal:Dalk_4735 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003504836.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: gur:Gura_0350 phosphonate ABC transporter, periplasmic phosphonate-binding protein YP_003504837.1 KEGG: geo:Geob_1370 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003504838.1 KEGG: sfu:Sfum_3268 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase YP_003504839.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: gur:Gura_0470 molybdopterin oxidoreductase YP_003504840.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_1148 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003504841.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: glo:Glov_1147 cytoplasmic chaperone TorD family protein YP_003504842.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: pha:PSHAb0110 putative type I phosphodiesterase/nucleotide pyrophosphatase protein YP_003504843.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: gem:GM21_1879 cytochrome c biogenesis protein transmembrane region YP_003504844.1 PFAM: Thioredoxin domain; KEGG: ccv:CCV52592_1651 hypothetical protein YP_003504846.1 KEGG: asa:ASA_0931 hypothetical protein YP_003504847.1 PFAM: protein of unknown function DUF1212; KEGG: vsa:VSAL_I0364 membrane protein YP_003504848.1 KEGG: dde:Dde_0496 hypothetical protein YP_003504849.1 KEGG: dde:Dde_0495 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase YP_003504850.1 KEGG: ccv:CCV52592_1376 hypothetical protein YP_003504851.1 KEGG: dde:Dde_0493 hypothetical protein YP_003504852.1 KEGG: dde:Dde_0492 hypothetical protein YP_003504853.1 KEGG: dde:Dde_0491 hypothetical protein YP_003504854.1 KEGG: dvl:Dvul_2362 hypothetical protein YP_003504855.1 KEGG: dde:Dde_0489 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase YP_003504856.1 PFAM: beta-lactamase domain protein; KEGG: gur:Gura_1594 beta-lactamase domain- containing protein YP_003504857.1 PFAM: nitroreductase; KEGG: dol:Dole_3049 nitroreductase YP_003504858.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dma:DMR_01920 heterodisulfide reductase subunit A YP_003504859.1 PFAM: ferric-uptake regulator; KEGG: wsu:WS0545 peroxide stress regulator YP_003504860.1 PFAM: periplasmic solute binding protein; KEGG: dat:HRM2_34130 putative ABC-type manganese/zinc transport system, substrate-binding component YP_003504861.1 KEGG: dat:HRM2_34140 hypothetical protein YP_003504862.1 KEGG: gem:GM21_3726 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003504863.1 KEGG: dat:HRM2_34160 putative ABC-type manganese/zinc transport system, permease component; PFAM: ABC-3 protein; iron dependent repressor; transport system permease protein; SMART: iron dependent repressor YP_003504865.1 PFAM: basic membrane lipoprotein; KEGG: dde:Dde_1507 Bmp family membrane protein YP_003504866.1 KEGG: dat:HRM2_06320 RbsA1; PFAM: ABC transporter related; SMART: AAA ATPase YP_003504867.1 PFAM: inner-membrane translocator; KEGG: dat:HRM2_06330 RbsC1 YP_003504868.1 PFAM: inner-membrane translocator; KEGG: dps:DP0679 sugar ABC transporter, permease protein YP_003504869.1 PFAM: phosphoribosyltransferase; KEGG: avn:Avin_47930 xanthine phosphoribosyltransferase YP_003504871.1 PFAM: protein of unknown function DUF340 membrane; KEGG: dde:Dde_2305 hypothetical protein YP_003504872.1 PFAM: Integral membrane protein TerC; KEGG: pmu:PM1066 hypothetical protein YP_003504873.1 KEGG: gem:GM21_2285 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003504874.1 KEGG: mmw:Mmwyl1_3695 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003504875.1 KEGG: mmw:Mmwyl1_3696 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor YP_003504876.1 KEGG: dde:Dde_1384 hypothetical protein YP_003504877.1 KEGG: dvm:DvMF_0572 threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003504878.1 KEGG: ilo:IL2343 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003504879.1 KEGG: vpa:VP2283 uracil permease; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease YP_003504880.1 TIGRFAM: uracil phosphoribosyltransferase; KEGG: bra:BRADO3518 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003504881.1 KEGG: gsu:GSU1041 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003504882.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dma:DMR_39330 putative 3-demethylubiquinone-9 3-methyltransferase YP_003504884.1 PFAM: PhoP regulatory network protein YrbL; KEGG: abu:Abu_1812 hypothetical protein YP_003504885.1 KEGG: sse:Ssed_0297 flavocytochrome c YP_003504886.1 TIGRFAM: flavocytochrome c; KEGG: saz:Sama_0611 fumarate reductase flavoprotein subunit precursor; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase YP_003504887.1 KEGG: sfu:Sfum_3991 signal transduction histidine kinase regulating citrate/malate metabolism; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003504888.1 KEGG: sfu:Sfum_3992 response regulator receiver and unknown domain protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003504889.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: ccv:CCV52592_2104 cytoplasmic chaperone YP_003504890.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vfm:VFMJ11_A0105 dimethylsulfoxide reductase, chain B YP_003504891.1 KEGG: dvm:DvMF_1612 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; Twin-arginine translocation pathway, signal sequence YP_003504892.1 KEGG: sde:Sde_2296 response regulator receiver domain-containing protein; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003504893.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: cla:Cla_0430 biotin sulfoxide reductase YP_003504894.1 KEGG: dat:HRM2_03410 ColS; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003504895.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; KEGG: sat:SYN_02383 phosphoenolpyruvate synthase YP_003504896.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: gur:Gura_2800 glutamate dehydrogenase YP_003504897.1 PFAM: PAS fold-4 domain protein; KEGG: ank:AnaeK_3310 protein of unknown function DUF438 YP_003504898.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ccv:CCV52592_0423 AbcB protein YP_003504899.1 KEGG: tdn:Suden_1346 putative sulfonate/nitrate transport system substrate-binding protein YP_003504900.1 KEGG: pca:Pcar_2562 cyclic AMP receptor protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp YP_003504901.1 PFAM: Domain of unknown function DUF1858; KEGG: sun:SUN_1311 hypothetical protein YP_003504902.1 KEGG: tdn:Suden_1345 hypothetical protein YP_003504903.1 TIGRFAM: PAS sensor protein; PFAM: ABC transporter related; Hemerythrin HHE cation binding domain protein; KEGG: dds:Ddes_1165 protein of unknown function DUF438; SMART: AAA ATPase YP_003504907.1 KEGG: mxa:MXAN_1696 Ig-like domain-containing protein YP_003504908.1 KEGG: hypothetical protein YP_003504909.1 PFAM: alpha/beta hydrolase fold; KEGG: pat:Patl_0074 alpha/beta hydrolase fold YP_003504910.1 PFAM: regulatory protein TetR; KEGG: pfo:Pfl01_2955 TetR family transcriptional regulator YP_003504911.1 PFAM: protein of unknown function DUF161; Protein of unknown function DUF2179; KEGG: dol:Dole_0958 hypothetical protein YP_003504912.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dps:DP1829 hypothetical protein YP_003504913.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1656 glycosyl transferase, group 1 family protein YP_003504914.1 KEGG: sat:SYN_00437 cell division protein FtsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain YP_003504915.1 KEGG: ppd:Ppro_3284 cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA YP_003504916.1 KEGG: nmn:NMCC_1719 cell division protein YP_003504917.1 TIGRFAM: D-alanine/D-alanine ligase; KEGG: pca:Pcar_2199 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; protein of unknown function DUF201; phosphoribosylglycinamide synthetase YP_003504918.1 KEGG: geo:Geob_0781 UDP-N-acetylmuramate/alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein YP_003504919.1 KEGG: aci:ACIAD3517 undecaprenyldiphospho- muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28 YP_003504920.1 KEGG: gur:Gura_3975 cell division protein FtsW; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein YP_003504921.1 KEGG: gur:Gura_3976 UDP-N-acetylmuramoylalanine--D- glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_003504922.1 TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide- transf erase; KEGG: gme:Gmet_0409 phospho-N-acetylmuramoyl- pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_003504923.1 PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: mmb:Mmol_2008 UDP-N-acetylmuramoylalanyl-D- glutamyl-2,6-diaminopimelate/D-alanyl-D -alanyl ligase YP_003504924.1 KEGG: gbm:Gbem_0486 UDP-N-acetylmuramyl-tripeptide synthetase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_003504925.1 KEGG: gsu:GSU3075 penicillin-binding protein; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003504927.1 KEGG: gem:GM21_0500 S-adenosyl-methyltransferase MraW; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase YP_003504929.1 PFAM: protein of unknown function UPF0040; KEGG: sfu:Sfum_3462 MraZ protein YP_003504930.1 KEGG: spc:Sputcn32_0619 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_003504931.1 KEGG: gbm:Gbem_3337 MazG family protein; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; phosphoribosyl-ATP pyrophosphohydrolase YP_003504932.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dps:DP1829 hypothetical protein YP_003504933.1 PFAM: protein of unknown function DUF342; KEGG: dde:Dde_1534 polymerase YP_003504934.1 KEGG: ppd:Ppro_1972 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; PAS fold domain protein YP_003504935.1 KEGG: geo:Geob_3597 chromosome segregation protein SMC; TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein YP_003504936.1 KEGG: dde:Dde_0679 rhodanese-like protein YP_003504937.1 PFAM: protein of unknown function DUF935; KEGG: dal:Dalk_3556 phage head morphogenesis protein, SPP1 gp7 family YP_003504938.1 KEGG: amc:MADE_00823 phage uncharacterized protein; TIGRFAM: phage uncharacterized protein; PFAM: protein of unknown function DUF264 YP_003504939.1 KEGG: ccv:CCV52592_0038 GatB/YqeY family protein YP_003504940.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dps:DP1829 hypothetical protein YP_003504941.1 PFAM: ROK family protein; KEGG: mei:Msip34_1274 ROK family protein YP_003504943.1 KEGG: dal:Dalk_0910 DNA repair photolyase-like protein YP_003504944.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: apa:APP7_1398 cell division protein FtsY-like protein; SMART: AAA ATPase YP_003504947.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: oan:Oant_0753 XRE family transcriptional regulator YP_003504948.1 KEGG: mmw:Mmwyl1_4146 peptidase S8 and S53 subtilisin kexin sedolisin YP_003504949.1 KEGG: dal:Dalk_4366 sporulation domain protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat YP_003504950.1 KEGG: dal:Dalk_4775 hypothetical protein YP_003504951.1 KEGG: dvu:DVU1117 hypothetical protein YP_003504952.1 KEGG: dde:Dde_3377 hypothetical protein YP_003504956.1 KEGG: par:Psyc_1018 hypothetical protein YP_003504958.1 KEGG: avi:Avi_5260 hypothetical protein YP_003504961.1 PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2298 transposase IS4 family protein YP_003504965.1 PFAM: nitrogen regulatory protein P-II; KEGG: geo:Geob_1818 nitrogen regulatory protein P- II YP_003504966.1 KEGG: dal:Dalk_3033 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter YP_003504967.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ypy:YPK_0218 hypothetical protein YP_003504968.1 PFAM: Protein of unknown function DUF2062; KEGG: glo:Glov_0526 hypothetical protein YP_003504969.1 KEGG: mxa:MXAN_3348 CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein YP_003504970.1 KEGG: dvm:DvMF_0284 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_003504971.1 KEGG: nam:NAMH_0456 hypothetical protein YP_003504972.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dps:DP1333 long-chain-fatty-acid--CoA ligase YP_003504973.1 KEGG: dal:Dalk_0589 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003504974.1 KEGG: noc:Noc_1357 hypothetical protein; PFAM: protein of unknown function DUF399; SMART: PDZ/DHR/GLGF domain protein YP_003504975.1 PFAM: nucleoside recognition domain protein; KEGG: sfu:Sfum_3415 nucleoside recognition domain protein YP_003504976.1 KEGG: gsu:GSU0486 threonine dehydratase; TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003504977.1 PFAM: permease; KEGG: sat:SYN_00339 permease YP_003504978.1 TIGRFAM: redox-active disulfide protein 2; KEGG: ppd:Ppro_0856 redox-active disulfide protein 2 YP_003504979.1 PFAM: MscS Mechanosensitive ion channel; KEGG: tcx:Tcr_1584 MscS mechanosensitive ion channel YP_003504980.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: dal:Dalk_2294 glyoxylate reductase YP_003504981.1 TIGRFAM: peptide deformylase; KEGG: pca:Pcar_2534 polypeptide deformylase; PFAM: formylmethionine deformylase YP_003504982.1 PFAM: amino acid-binding ACT domain protein; KEGG: gur:Gura_4386 amino acid-binding ACT domain- containing protein YP_003504983.1 KEGG: ATP-dependent clp protease ATP-binding subunit; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; AAA ATPase central domain protein; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase YP_003504984.1 KEGG: rpa:RPA4562 putative 2-dehydropantoate 2- reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; NUDIX hydrolase YP_003504985.1 PFAM: type IV pilus assembly PilZ YP_003504986.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; Redoxin domain protein; KEGG: peroxiredoxins, prx-1, prx-2, prx-3 YP_003504987.1 PFAM: high-affinity nickel-transporter; KEGG: dde:Dde_0285 ABC-type uncharacterized transport system permease component-like YP_003504988.1 KEGG: ppd:Ppro_3679 ABC-type uncharacterized transport system periplasmic component-like protein YP_003504989.1 PFAM: isochorismatase hydrolase; KEGG: glo:Glov_2963 isochorismatase hydrolase YP_003504990.1 KEGG: gsu:GSU0572 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003504991.1 KEGG: gme:Gmet_0873 tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; PFAM: tRNA methyl transferase-like YP_003504992.1 PFAM: Queuosine synthesis-like; KEGG: cco:CCC13826_1003 hypothetical protein YP_003504993.1 PFAM: ribosomal protein S9; KEGG: hch:HCH_05901 ribosomal protein S9 YP_003504994.1 KEGG: glo:Glov_3191 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13 YP_003504995.1 KEGG: dvm:DvMF_2883 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19 YP_003504996.1 TIGRFAM: tRNA (guanine-N1)-methyltransferase; KEGG: dde:Dde_1096 tRNA (guanine37-N1) methyltransferase; PFAM: Protein of unknown function DUF2168; tRNA (guanine-N1-)-methyltransferase YP_003504997.1 KEGG: hap:HAPS_1942 16S rRNA-processing protein; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein YP_003504998.1 KEGG: dds:Ddes_1802 hypothetical protein YP_003504999.1 KEGG: afr:AFE_2855 ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16 YP_003505000.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: dds:Ddes_1804 signal recognition particle protein; SMART: AAA ATPase YP_003505001.1 PFAM: cyclic nucleotide-binding; ribonuclease BN; KEGG: tbd:Tbd_1570 cyclic nucleotide-binding domain- containing protein YP_003505002.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: dde:Dde_0064 hypothetical protein YP_003505003.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sat:SYN_02639 long-chain fatty acid transport protein YP_003505004.1 PFAM: conserved hypothetical protein; KEGG: pca:Pcar_2153 hypothetical protein YP_003505005.1 KEGG: geo:Geob_3588 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_003505006.1 PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: sat:SYN_00575 type 4 prepilin-like proteins leader peptide processing enzyme YP_003505007.1 KEGG: sat:SYN_00961 putative inhibitor of MCP methylation YP_003505008.1 PFAM: protein of unknown function DUF1009; KEGG: ade:Adeh_1086 hypothetical protein YP_003505009.1 PFAM: oxidoreductase domain protein; KEGG: noc:Noc_1755 oxidoreductase YP_003505010.1 KEGG: dol:Dole_2840 acyl-(acyl-carrier-protein)-- UDP-N-acetylglucosamine O-acyltransferase; TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N-acetylglu cosamineO-acyltransferase YP_003505011.1 KEGG: dvu:DVU2368 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_003505012.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; KEGG: nmn:NMCC_1972 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_003505013.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: pca:Pcar_1252 outer membrane protein YP_003505014.1 KEGG: gbm:Gbem_0839 outer membrane protein assembly complex, YaeT protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein YP_003505015.1 TIGRFAM: ATP phosphoribosyltransferase; KEGG: gem:GM21_3801 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region YP_003505016.1 KEGG: dvl:Dvul_0131 UDP-N-acetylglucosamine 1- carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase) YP_003505017.1 KEGG: sat:SYN_01794 peptide release factor- glutamine N5-methyltransferase; TIGRFAM: modification methylase, HemK family; PFAM: putative RNA methylase YP_003505018.1 KEGG: dal:Dalk_5213 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein YP_003505019.1 PFAM: protein of unknown function DUF1385; KEGG: geo:Geob_0684 protein of unknown function DUF1385 YP_003505020.1 KEGG: cvi:CV_1747 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31 YP_003505021.1 TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Ribonuclease B OB region domain; Rho termination factor domain protein; Rho termination factor RNA-binding; KEGG: glo:Glov_1025 transcription termination factor Rho; SMART: Cold shock protein; AAA ATPase YP_003505023.1 PFAM: protein of unknown function DUF299; KEGG: bba:Bd1093 hypothetical protein YP_003505024.1 SMART: NAD-dependent DNA ligase ; BRCT domain protein; Helix-hairpin-helix DNA-binding class 1; TIGRFAM: DNA ligase, NAD-dependent; KEGG: vpa:VP0800 NAD-dependent DNA ligase LigA; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4- type; NAD-dependent DNA ligase OB-fold YP_003505025.1 PFAM: peptidase U32; KEGG: gem:GM21_1526 peptidase U32 YP_003505026.1 PFAM: O-methyltransferase family 3; KEGG: mmw:Mmwyl1_2374 caffeoyl-CoA O- methyltransferase YP_003505027.1 KEGG: dat:HRM2_37240 hypothetical protein YP_003505028.1 KEGG: sat:SYN_01474 putative cytoplasmic protein YP_003505029.1 SMART: AAA ATPase; TIGRFAM: flagellar protein export ATPase FliI; ATPase, FliI/YscN family; KEGG: pca:Pcar_1189 flagellum-specific ATP synthase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein YP_003505030.1 PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: ppu:PP_4367 flagellar assembly protein H YP_003505031.1 KEGG: nam:NAMH_1100 flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG YP_003505032.1 KEGG: wsu:WS1999 flagellar MS-ring protein; TIGRFAM: flagellar M-ring protein FliF; PFAM: Flagellar M-ring domain protein; secretory protein YscJ/FliF family protein YP_003505033.1 KEGG: cff:CFF8240_0704 flagellar hook-basal body protein FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE YP_003505034.1 KEGG: bba:Bd3406 flagellar basal-body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_003505035.1 KEGG: dde:Dde_0356 flagellar basal body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein YP_003505036.1 KEGG: rpa:RPA0754 signal transduction histidine kinase YP_003505037.1 KEGG: dvl:Dvul_1416 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003505038.1 KEGG: sat:SYN_01466 sigma-54 dependent transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase YP_003505039.1 KEGG: tcx:Tcr_1445 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003505040.1 KEGG: SLEI family protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat YP_003505041.1 KEGG: vpa:VPA0746 chemotaxis protein CheV; PFAM: CheW domain protein; response regulator receiver; SMART: response regulator receiver; CheW domain protein YP_003505042.1 TIGRFAM: tol-pal system protein YbgF; KEGG: geo:Geob_1555 tol-pal system protein YbgF YP_003505043.1 KEGG: dps:DP1875 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; aminotransferase class I and II; aromatic amino acid beta- eliminating lyase/threonine aldolase YP_003505044.1 KEGG: gme:Gmet_2563 two component, sigma54 specific, Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase YP_003505045.1 SMART: Cold shock protein; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; KEGG: gur:Gura_2699 ribonuclease R; PFAM: ribonuclease II; Ribonuclease B OB region domain YP_003505046.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: wsu:WS0108 GGDEF family protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003505047.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: csa:Csal_2435 outer-membrane lipoprotein carrier protein YP_003505048.1 KEGG: geo:Geob_3494 pyruvate carboxylase; TIGRFAM: pyruvate carboxylase; PFAM: Conserved carboxylase region; Carbamoyl- phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; pyruvate carboxyltransferase; phosphoribosylglycinamide synthetase; RimK domain protein ATP-grasp; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein YP_003505049.1 KEGG: azo:azo3887 hypothetical protein YP_003505050.1 TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; KEGG: gsu:GSU3279 excinuclease ABC, C subunit; SMART: Excinuclease ABC C subunit domain protein YP_003505051.1 PFAM: protein of unknown function DUF1291; KEGG: dal:Dalk_4103 protein of unknown function DUF1291 YP_003505052.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: gem:GM21_0426 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_003505053.1 KEGG: abu:Abu_0344 cation efflux system, membrane protein; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_003505054.1 PFAM: protein of unknown function DUF156; KEGG: abu:Abu_0343 hypothetical protein YP_003505055.1 PFAM: Ferritin Dps family protein; Rubrerythrin; KEGG: sun:SUN_0440 bacterioferritin YP_003505056.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: gem:GM21_0426 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_003505057.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: gem:GM21_0426 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_003505058.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: gur:Gura_2189 pyruvate ferredoxin/flavodoxin oxidoreductase YP_003505059.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: geo:Geob_2667 thiamine pyrophosphate protein domain protein TPP-binding YP_003505060.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: geo:Geob_2666 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein YP_003505061.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_1626 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003505062.1 KEGG: gme:Gmet_0730 succinyl-CoA synthetase (ADP- forming) alpha subunit; TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA- binding domain protein YP_003505063.1 TIGRFAM: succinyl-CoA synthetase, beta subunit; KEGG: gbm:Gbem_1464 succinyl-CoA synthetase, beta subunit; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase YP_003505064.1 KEGG: geo:Geob_2664 malate dehydrogenase, NAD- dependent; TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase YP_003505065.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; KEGG: ade:Adeh_2227 isocitrate dehydrogenase, NADP- dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type YP_003505066.1 KEGG: sfu:Sfum_0556 peptidase C14, caspase catalytic subunit P20; PFAM: peptidase C14 caspase catalytic subunit p20; protein of unknown function DUF323; SMART: Peptidase C14, caspase precursor p45, core YP_003505070.1 KEGG: dvm:DvMF_1878 hemerythrin HHE cation binding domain protein YP_003505071.1 KEGG: gur:Gura_1939 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; TIGRFAM: aconitate hydratase 2; PFAM: Aconitase B, N-terminal; aconitate hydratase domain protein YP_003505072.1 PFAM: cyclase family protein; KEGG: dal:Dalk_2911 cyclase family protein YP_003505073.1 KEGG: gur:Gura_0893 putative PTS IIA-like nitrogen- regulatory protein PtsN; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; Prophage CP4-57 regulatory YP_003505074.1 PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; KEGG: tmz:Tmz1t_0615 sulphate transporter YP_003505075.1 KEGG: hpp:HPP12_1289 fumarate hydratase; TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; Fumarase C-like YP_003505076.1 KEGG: dma:DMR_34300 L-tartrate dehydratase alpha subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region YP_003505077.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; KEGG: acp:A2cp1_0286 Fe-S type hydro-lyase tartrate/fumarate beta region; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region YP_003505078.1 PFAM: UspA domain protein; KEGG: geo:Geob_3533 UspA domain protein YP_003505079.1 KEGG: gsu:GSU0598 sigma-54 dependent DNA-binding response regulator; PFAM: response regulator receiver; SMART: response regulator receiver YP_003505080.1 KEGG: glo:Glov_2238 hydrolase, TatD family; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease YP_003505081.1 KEGG: geo:Geob_2149 methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase class I (M); t-RNA-binding domain protein YP_003505082.1 PFAM: PSP1 domain protein; KEGG: geo:Geob_2150 PSP1 domain protein YP_003505083.1 KEGG: gur:Gura_3154 DNA polymerase III, delta prime subunit YP_003505084.1 TIGRFAM: thymidylate kinase; KEGG: dvu:DVU2140 thymidylate kinase; PFAM: thymidylate kinase YP_003505085.1 KEGG: dps:DP1339 hypothetical protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MOSC domain containing protein YP_003505086.1 KEGG: hypothetical protein; TIGRFAM: copper ion binding protein; PFAM: Heavy metal transport/detoxification protein YP_003505087.1 KEGG: gem:GM21_2237 cysteine synthase A; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003505088.1 PFAM: conserved hypothetical protein; KEGG: dal:Dalk_1999 hypothetical protein YP_003505089.1 TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; KEGG: pca:Pcar_0376 recombination protein RecR; SMART: Toprim sub domain protein YP_003505090.1 TIGRFAM: ribonuclease, Rne/Rng family; KEGG: glo:Glov_0469 ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G YP_003505091.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: psa:PST_2948 cell division protein FtsJ YP_003505092.1 PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: pca:Pcar_2400 NCAIR mutase (PurE)-related proteins YP_003505093.1 PFAM: nitroreductase; KEGG: dal:Dalk_3773 nitroreductase YP_003505094.1 PFAM: protein of unknown function DUF134; KEGG: dol:Dole_1957 hypothetical protein YP_003505095.1 PFAM: Methyltransferase type 12; Methyltransferase type 11; Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: bvi:Bcep1808_7674 methyltransferase type 11 YP_003505096.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: glo:Glov_1143 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase YP_003505097.1 TIGRFAM: seryl-tRNA synthetase; KEGG: sfu:Sfum_1424 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl- tRNA synthetase, class IIa-like YP_003505098.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; PFAM: TPR repeat-containing protein; KEGG: glo:Glov_2951 outer membrane assembly lipoprotein YfiO; SMART: Tetratricopeptide repeat YP_003505099.1 TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; KEGG: gsu:GSU3205 MiaB-like tRNA modifying enzyme YliG; SMART: Elongator protein 3/MiaB/NifB YP_003505100.1 KEGG: dma:DMR_06190 riboflavin kinase/FMN adenylyltransferase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase YP_003505101.1 PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2298 transposase IS4 family protein YP_003505102.1 KEGG: glo:Glov_1665 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003505103.1 PFAM: outer membrane efflux protein; KEGG: dat:HRM2_47430 putative outer membrane protein YP_003505104.1 KEGG: tcx:Tcr_0454 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003505105.1 PFAM: acriflavin resistance protein; KEGG: gme:Gmet_3127 acriflavin resistance protein YP_003505106.1 KEGG: pna:Pnap_2829 hypothetical protein YP_003505107.1 PFAM: protein of unknown function UPF0118; KEGG: pfs:PFLU4497 putative transmembrane protein YP_003505108.1 KEGG: pca:Pcar_0662 molybdate uptake regulatory protein, HTH containing; TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein YP_003505109.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: abu:Abu_0660 NAD-dependent epimerase/dehydratase family protein YP_003505110.1 PFAM: UvrD/REP helicase; KEGG: glo:Glov_0481 UvrD/REP helicase YP_003505111.1 KEGG: dat:HRM2_22170 EriC2 YP_003505112.1 PFAM: Cl- channel voltage-gated family protein; KEGG: dde:Dde_0310 CBS YP_003505113.1 PFAM: NUDIX hydrolase; KEGG: sat:SYN_00539 phosphohydrolase YP_003505114.1 KEGG: dde:Dde_1702 hypothetical protein YP_003505115.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ppd:Ppro_2229 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003505116.1 KEGG: gme:Gmet_0870 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase YP_003505117.1 KEGG: tbd:Tbd_1163 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_003505118.1 KEGG: cysteine desulfurase, mitochondrial precursor ; K04487 cysteine desulfurase; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003505119.1 PFAM: major facilitator superfamily MFS_1; nucleoside:H symporter; KEGG: mmb:Mmol_0601 major facilitator superfamily MFS_1 YP_003505120.1 KEGG: dal:Dalk_0840 hypothetical protein YP_003505121.1 PFAM: HhH-GPD family protein; helix-hairpin-helix motif; iron-sulfur cluster loop; KEGG: ppd:Ppro_0663 HhH-GPD family protein; SMART: HhH-GPD family protein YP_003505122.1 KEGG: mxa:MXAN_0213 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type YP_003505123.1 PFAM: glycosyl transferase family 2; KEGG: sfu:Sfum_1811 glycosyl transferase, family 2 YP_003505124.1 KEGG: pca:Pcar_2042 membrane-bound lytic murein transglycosylase D precursor; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM YP_003505125.1 TIGRFAM: KpsF/GutQ family protein; KEGG: cjd:JJD26997_1778 arabinose-5-phosphate isomerase; PFAM: sugar isomerase (SIS) YP_003505126.1 KEGG: gem:GM21_2612 2-dehydro-3- deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA YP_003505127.1 PFAM: protein of unknown function DUF198; KEGG: gur:Gura_4045 putative GTP cyclohydrolase YP_003505128.1 KEGG: gsu:GSU1011 hypothetical protein YP_003505129.1 PFAM: protein of unknown function UPF0102; KEGG: dal:Dalk_4642 protein of unknown function UPF0102 YP_003505130.1 KEGG: apa:APP7_0131 ribonuclease HII; PFAM: ribonuclease HII/HIII YP_003505131.1 KEGG: gsu:GSU0305 hydrogenase accessory protein HypB; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K YP_003505132.1 PFAM: hydrogenase expression/synthesis HypA; KEGG: cju:C8J_0587 hydrogenase nickel insertion protein HypA YP_003505133.1 TIGRFAM: dephospho-CoA kinase; KEGG: gur:Gura_3643 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_003505134.1 PFAM: protein of unknown function UPF0153; KEGG: gme:Gmet_2777 hypothetical protein YP_003505135.1 KEGG: acp:A2cp1_4215 5-oxopent-3-ene-1,2,5- tricarboxylate decarboxylase; PFAM: fumarylacetoacetate (FAA) hydrolase YP_003505136.1 PFAM: Polynucleotide adenylyltransferase region; KEGG: gme:Gmet_2285 polynucleotide adenylyltransferase region YP_003505137.1 KEGG: sfu:Sfum_2125 phosphodiesterase, MJ0936 family; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase YP_003505138.1 PFAM: FAD dependent oxidoreductase; KEGG: sat:SYN_02917 FAD-dependent dehydrogenase YP_003505140.1 PFAM: aminotransferase class V; KEGG: bba:Bd1462 aspartate aminotransferase, putative YP_003505141.1 KEGG: gme:Gmet_3259 ATP phosphoribosyltransferase regulatory subunit; PFAM: tRNA synthetase class II (G H P and S) YP_003505142.1 SMART: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; KEGG: geo:Geob_0846 adenylosuccinate synthase; PFAM: adenylosuccinate synthetase YP_003505143.1 KEGG: sat:SYN_00307 aspartyl/glutamyl-tRNA(asn/Gln) amidotransferase subunit C; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit YP_003505144.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; KEGG: gme:Gmet_0075 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase YP_003505145.1 KEGG: geo:Geob_0382 glutamyl-tRNA(Gln) amidotransferase, B subunit; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; Asn/Gln amidotransferase; GatB central domain protein YP_003505146.1 KEGG: ppd:Ppro_0522 glyoxalase/bleomycin resistance protein/dioxygenase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_003505148.1 KEGG: vvy:VV2244 C4-dicarboxylate transporter; TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier-like; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit YP_003505149.1 KEGG: vvy:VV2244 C4-dicarboxylate transporter; TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier-like YP_003505150.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ppr:PBPRA2583 putative carboxypeptidase G2 YP_003505151.1 KEGG: rpa:RPA0673 hydroxybenzoate anaerobic degradation regulatory protein HbaR; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding YP_003505152.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_00159 ABC-type proline/glycine betaine transport system, permease component YP_003505153.1 TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; KEGG: csa:Csal_2945 ABC transporter related; SMART: AAA ATPase YP_003505154.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_2944 binding-protein-dependent transport systems inner membrane component YP_003505155.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ecr:ECIAI1_2209 putative transporter subunit: periplasmic-binding component of ABC superfamily YP_003505156.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: nis:NIS_0741 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase YP_003505157.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: hhe:HH0647 nucleotide sugar dehydratase YP_003505158.1 PFAM: Protein of unknown function DUF2088; KEGG: geo:Geob_0833 hypothetical protein YP_003505159.1 TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; KEGG: gbm:Gbem_1354 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB YP_003505160.1 KEGG: dds:Ddes_1808 sec-independent protein translocase, TatC subunit; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase YP_003505161.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dal:Dalk_4185 sec-independent translocation protein MttA/Hcf106 YP_003505162.1 KEGG: dvm:DvMF_3086 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC YP_003505163.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4- dehydrorhamnose reductase; KEGG: gsu:GSU0385 NADH dehydrogenase subunit, putative YP_003505164.1 PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thioredoxin domain; KEGG: dds:Ddes_1441 redoxin domain protein YP_003505165.1 PFAM: protein of unknown function DUF151; KEGG: dvm:DvMF_1331 protein of unknown function DUF151 YP_003505166.1 KEGG: dar:Daro_3017 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003505167.1 KEGG: pca:Pcar_1891 preprotein translocase subunit SecF; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein YP_003505168.1 KEGG: gem:GM21_1784 protein-export membrane protein SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein YP_003505169.1 KEGG: dma:DMR_22320 preprotein translocase YajC subunit; TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein YP_003505170.1 TIGRFAM: queuine tRNA-ribosyltransferase; tRNA- guanine transglycosylase, various specificities; KEGG: dde:Dde_2844 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_003505171.1 KEGG: maq:Maqu_1113 S-adenosylmethionine--tRNA- ribosyltransferase-isomerase; TIGRFAM:S-adenosylmethionine/tRNA-ribosyltransferase -isomerase; PFAM: Queuosine biosynthesis protein YP_003505172.1 TIGRFAM: threonine synthase; KEGG: gme:Gmet_1631 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003505173.1 PFAM: nucleoside diphosphate kinase; KEGG: glo:Glov_3611 nucleoside-diphosphate kinase; SMART: nucleoside diphosphate kinase YP_003505174.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: dds:Ddes_0206 cupin 2 conserved barrel domain protein YP_003505175.1 PFAM: sodium/hydrogen exchanger; KEGG: dal:Dalk_0142 sodium/hydrogen exchanger YP_003505176.1 KEGG: cha:CHAB381_0974 sodium/hydrogen exchanger family protein YP_003505177.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bpt:Bpet3184 amino acid transporter LysE YP_003505178.1 KEGG: vfm:VFMJ11_1150 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain YP_003505179.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: dol:Dole_0855 sodium/hydrogen exchanger YP_003505180.1 TIGRFAM: 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; KEGG: eic:NT01EI_3255 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase, putative; PFAM: MECDP-synthase YP_003505181.1 PFAM: Extracellular ligand-binding receptor; KEGG: geo:Geob_2798 extracellular ligand-binding receptor YP_003505182.1 PFAM: Extracellular ligand-binding receptor; KEGG: gbm:Gbem_2189 extracellular ligand-binding receptor YP_003505185.1 KEGG: cbg:CbuG_0954 carbon storage regulator; TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator YP_003505186.1 PFAM: protein of unknown function DUF180; KEGG: sat:SYN_02809 transmembrane protein YP_003505187.1 PFAM: flagellin domain protein; KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL, putative YP_003505188.1 KEGG: dal:Dalk_0987 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_003505190.1 PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: gme:Gmet_2286 anti-sigma-28 factor, FlgM YP_003505191.1 PFAM: Flagellar protein FlgJ-like; KEGG: dal:Dalk_0989 flagellar protein FlgJ YP_003505192.1 PFAM: flagellar P-ring protein; KEGG: gsu:GSU3047 flagellar basal body P-ring protein YP_003505193.1 PFAM: flagellar L-ring protein; KEGG: gem:GM21_3844 flagellar L-ring protein YP_003505194.1 TIGRFAM: flagella basal body P-ring formation protein FlgA; KEGG: xca:xccb100_2252 flagellar basal body P-ring biosynthesis protein FlgA YP_003505195.1 KEGG: gme:Gmet_0431 flagellar basal body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_003505196.1 KEGG: cjj:CJJ81176_0720 flagellar basal-body rod protein; TIGRFAM: fagellar hook-basal body protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein YP_003505198.1 PFAM: ferric-uptake regulator; KEGG: wsu:WS1045 hypothetical protein YP_003505199.1 PFAM: periplasmic solute binding protein; KEGG: cco:CCC13826_1793 putative carbon storage regulator-like protein YP_003505200.1 PFAM: Radical SAM domain protein; KEGG: sat:SYN_01173 radical SAM superfamily protein YP_003505201.1 TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: gme:Gmet_3332 Ni-Fe hydrogenase, small subunit:twin-arginine translocation pathway signal; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003505202.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: gsu:GSU0122 nickel-dependent hydrogenase, large subunit YP_003505203.1 KEGG: gme:Gmet_3329 peptidase M52, hydrogenase maturation peptidase; TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein YP_003505204.1 KEGG: gbm:Gbem_3748 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_3; SMART: Tetratricopeptide repeat YP_003505205.1 KEGG: sat:SYN_02160 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_003505206.1 TIGRFAM: diaminopimelate epimerase; KEGG: dal:Dalk_0413 diaminopimelate epimerase; PFAM: diaminopimelate epimerase YP_003505207.1 TIGRFAM: dihydrodipicolinate synthase; KEGG: sat:SYN_02161 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_003505208.1 TIGRFAM: dihydrodipicolinate reductase; KEGG: geo:Geob_1131 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase YP_003505209.1 PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; 4Fe-4S ferredoxin iron- sulfur binding domain protein; molybdopterin oxidoreductase; KEGG: gme:Gmet_3022 Fe(III) reductase, alpha subunit YP_003505210.1 PFAM: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: gsu:GSU0510 Fe(III) reductase, beta subunit YP_003505212.1 PFAM: formyl transferase domain protein; KEGG: gem:GM21_0649 methionyl-tRNA formyltransferase YP_003505213.1 KEGG: tcx:Tcr_0472 methylation site YP_003505214.1 PFAM: Ankyrin; KEGG: inversin protein alternative isoform YP_003505215.1 KEGG: dds:Ddes_0940 protein of unknown function DUF456 YP_003505216.1 PFAM: methylpurine-DNA glycosylase (MPG); KEGG: psp:PSPPH_4413 3-methyladenine DNA glycosylase YP_003505217.1 KEGG: pin:Ping_3702 Sel1-like repeat-containing serine/threonine protein kinase; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein YP_003505218.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE4 domain protein; histidine kinase HAMP region domain protein; KEGG: hch:HCH_02106 response regulator; SMART: GGDEF domain containing protein YP_003505219.1 TIGRFAM: outer membrane adhesin like proteiin; PFAM: von Willebrand factor type A; Hemolysin-type calcium-binding region; KEGG: cja:CJA_1396 putative hemolysin; SMART: von Willebrand factor type A YP_003505220.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: maq:Maqu_0453 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase YP_003505221.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dat:HRM2_49230 OppD; SMART: AAA ATPase YP_003505222.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_1827 binding-protein-dependent transport systems inner membrane component YP_003505223.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_1533 binding-protein-dependent transport systems inner membrane component YP_003505224.1 PFAM: extracellular solute-binding protein family 5; KEGG: dde:Dde_0275 oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein YP_003505225.1 KEGG: dal:Dalk_0438 isochorismatase hydrolase YP_003505226.1 PFAM: GCN5-related N-acetyltransferase; KEGG: avn:Avin_46600 GCN5-related N- acetyltransferase YP_003505227.1 TIGRFAM: sugar O-acyltransferase, sialic acid O- acetyltransferase NeuD family; KEGG: avn:Avin_30060 trimeric LpxA-like family protein YP_003505228.1 KEGG: neu:NE1206 glutathione peroxidase; PFAM: glutathione peroxidase YP_003505229.1 KEGG: gem:GM21_0644 thiolase, putative YP_003505230.1 KEGG: dde:Dde_1175 RNA-binding region RNP-1; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein YP_003505231.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DP1356 ferredoxin YP_003505232.1 PFAM: thioesterase superfamily protein; KEGG: cja:CJA_0628 thioesterase family protein domain protein YP_003505233.1 TIGRFAM: methionine-R-sulfoxide reductase; peptide methionine sulfoxide reductase; KEGG: dal:Dalk_4702 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; Methionine sulfoxide reductase B YP_003505234.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: gsu:GSU1183 O-acetyl-L-homoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein YP_003505235.1 KEGG: gsu:GSU1374 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003505236.1 KEGG: hch:HCH_01388 3,4-dihydroxy-2-butanone 4- phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase YP_003505237.1 PFAM: protein of unknown function DUF1486; Limonene- 12-epoxide hydrolase; KEGG: cti:RALTA_B0266 hypothetical protein YP_003505238.1 KEGG: ank:AnaeK_1781 hypothetical protein YP_003505239.1 KEGG: ank:AnaeK_1782 flavocytochrome c; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase YP_003505240.1 TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; KEGG: glo:Glov_0949 fructose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II YP_003505241.1 KEGG: gsu:GSU0772 NADPH-dependent FMN reductase domain-containing protein YP_003505243.1 PFAM: FecR protein; KEGG: gem:GM21_0282 anti-FecI sigma factor, FecR YP_003505244.1 KEGG: pla:Plav_1905 hypothetical protein YP_003505245.1 KEGG: pmr:PMI2319 prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase YP_003505246.1 KEGG: glo:Glov_2708 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2 YP_003505247.1 KEGG: tgr:Tgr7_1160 translation elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein YP_003505248.1 PFAM: HNH endonuclease; KEGG: mca:MCA0503 hypothetical protein YP_003505249.1 PFAM: thiazole biosynthesis family protein; KEGG: pca:Pcar_0609 thiazole synthase YP_003505250.1 KEGG: sfu:Sfum_1822 thiamine biosynthesis protein ThiH; TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein YP_003505251.1 KEGG: pcr:Pcryo_1480 methylated-DNA--protein- cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding YP_003505252.1 TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; KEGG: geo:Geob_0383 translation initiation factor, aIF-2BI family; PFAM: initiation factor 2B related YP_003505253.1 KEGG: dps:DP1920 hypothetical protein; TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase YP_003505254.1 KEGG: tdn:Suden_0208 response regulator receiver domain-containing protein; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein YP_003505255.1 KEGG: dol:Dole_1938 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003505256.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: metal-dependent phosphohydrolase HD sub domain; Hemerythrin HHE cation binding domain protein; KEGG: dat:HRM2_20440 two component protein (transcriptional response regulator/sensory box); SMART: metal-dependent phosphohydrolase HD region YP_003505257.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dat:HRM2_09940 enoyl-CoA hydratase/carnithine racemase [precursor] (short chain enoyl-CoA hydratase) YP_003505258.1 KEGG: tgr:Tgr7_2451 putative diguanylate cyclase YP_003505259.1 KEGG: abu:Abu_0455 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003505260.1 SMART: GGDEF domain containing protein; TIGRFAM: diguanylate cyclase; KEGG: tdn:Suden_0965 cache sensor signal transduction histidine kinase; PFAM: GGDEF domain containing protein YP_003505261.1 KEGG: gsu:GSU1032 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer YP_003505262.1 PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2298 transposase IS4 family protein YP_003505263.1 KEGG: dps:DP0160 periplasmic [NiFeSe] hydrogenase, small subunit [precursor]; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003505264.1 KEGG: dps:DP0159 cytochrome-c3 hydrogenase (NiFeSe), large subunit; PFAM: nickel-dependent hydrogenase large subunit YP_003505265.1 PFAM: integrase family protein; KEGG: bbt:BBta_1247 putative phage related integrase YP_003505266.1 SMART: AAA ATPase; KEGG: gur:Gura_4144 AAA ATPase YP_003505267.1 PFAM: Protein of unknown function DUF2179; KEGG: pca:Pcar_2434 hypothetical protein YP_003505268.1 KEGG: dac:Daci_1655 hypothetical protein YP_003505270.1 KEGG: bte:BTH_I2743 type I restriction system adenine methylase; PFAM: N-6 DNA methylase YP_003505271.1 KEGG: pca:Pcar_1093 hypothetical protein YP_003505272.1 PFAM: restriction modification system DNA specificity domain; KEGG: rfr:Rfer_0030 restriction modification system DNA specificity subunit YP_003505273.1 KEGG: afe:Lferr_0291 hypothetical protein YP_003505274.1 KEGG: abu:Abu_1708 hypothetical protein YP_003505275.1 TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; KEGG: sat:SYN_00497 type I restriction-modification system restriction subunit; SMART: DEAD-like helicase YP_003505276.1 PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2298 transposase IS4 family protein YP_003505278.1 KEGG: dma:DMR_30060 hypothetical protein YP_003505279.1 KEGG: she:Shewmr4_3206 hypothetical protein YP_003505280.1 KEGG: she:Shewmr4_3207 hypothetical protein YP_003505281.1 KEGG: dps:DP1354 5'-nucleotidase; PFAM: 5-nucleotidase YP_003505282.1 KEGG: glo:Glov_3693 hypothetical protein YP_003505283.1 PFAM: transposase IS3/IS911 family protein; KEGG: dde:Dde_3341 hypothetical protein YP_003505286.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: gur:Gura_2753 phosphonate ABC transporter, periplasmic phosphonate-binding protein YP_003505287.1 KEGG: geo:Geob_1370 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein YP_003505288.1 KEGG: dol:Dole_1649 two component, sigma54 specific, Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase YP_003505289.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eba:ebA6435 molybdenum enzyme related to thiosulfate reductase and polysulfide reductase, medium subunit YP_003505290.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: gur:Gura_0470 molybdopterin oxidoreductase YP_003505291.1 KEGG: msu:MS2335 twin-argninine leader-binding protein DmsD YP_003505292.1 KEGG: vap:Vapar_2240 hypothetical protein YP_003505293.1 KEGG: dol:Dole_0233 hypothetical protein YP_003505295.1 KEGG: dma:DMR_30060 hypothetical protein YP_003505296.1 KEGG: maq:Maqu_2981 IstB ATP binding domain- containing protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003505297.1 PFAM: Integrase catalytic region; KEGG: ppr:PBPRB1457 transposase YP_003505298.1 KEGG: gur:Gura_3820 transposase IS3/IS911 family protein YP_003505299.1 KEGG: elf:LF82_p696 cold shock protein YP_003505300.1 KEGG: wsu:WS0941 hypothetical protein YP_003505303.1 PFAM: Rubrerythrin; KEGG: dps:DP1864 hypothetical protein YP_003505304.1 PFAM: aminotransferase class I and II; KEGG: gme:Gmet_2078 hypothetical protein YP_003505305.1 KEGG: gme:Gmet_2907 selenophosphate synthase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003505306.1 PFAM: Carboxylyase-related protein; KEGG: glo:Glov_1830 UbiD family decarboxylase YP_003505307.1 PFAM: protein of unknown function DUF204; KEGG: dvl:Dvul_0455 hypothetical protein YP_003505308.1 KEGG: dma:DMR_09640 putative sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003505309.1 KEGG: dvl:Dvul_2517 arginine decarboxylase; TIGRFAM: arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_003505310.1 PFAM: Saccharopine dehydrogenase; KEGG: dvl:Dvul_2516 saccharopine dehydrogenase YP_003505311.1 KEGG: sde:Sde_1596 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_003505312.1 KEGG: dvl:Dvul_2513 putative agmatinase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase YP_003505313.1 KEGG: dat:HRM2_12550 hypothetical protein YP_003505314.1 PFAM: protein of unknown function DUF833; KEGG: gsu:GSU0792 hypothetical protein YP_003505315.1 PFAM: protein of unknown function UPF0029; KEGG: abu:Abu_1834 hypothetical protein YP_003505316.1 TIGRFAM: adenine deaminase; KEGG: sun:SUN_0856 adenine deaminase; PFAM: amidohydrolase YP_003505317.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: lhk:LHK_00455 probable membrane permease protein YP_003505318.1 PFAM: protein of unknown function DUF454; KEGG: mmw:Mmwyl1_1530 hypothetical protein YP_003505319.1 PFAM: SNARE associated Golgi protein; phospholipase D/Transphosphatidylase; KEGG: noc:Noc_1912 phospholipase D/transphosphatidylase; SMART: phospholipase D/Transphosphatidylase YP_003505320.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: reu:Reut_A3204 endonuclease/exonuclease/phosphatase YP_003505321.1 KEGG: dal:Dalk_1837 protein of unknown function DUF21; PFAM: protein of unknown function DUF21; CBS domain containing protein; SMART: CBS domain containing protein YP_003505322.1 KEGG: rhi:NGR_c29860 molybdenum transport system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003505323.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: azo:azo3846 putative molybdate transport system substrate-binding protein YP_003505324.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0154 molybdenum ABC-transporter, permease protein (ModB)-like YP_003505325.1 TIGRFAM: modD protein; KEGG: gsu:GSU2963 ModD protein; PFAM: Quinolinate phosphoribosyl transferase YP_003505327.1 PFAM: metallophosphoesterase; KEGG: pct:PC1_3529 metallophosphoesterase YP_003505328.1 KEGG: sde:Sde_2296 response regulator receiver domain-containing protein; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003505329.1 KEGG: dat:HRM2_03410 ColS; PFAM: histidine kinase A domain protein; ATP- binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: histidine kinase A domain protein; ATP- binding region ATPase domain protein YP_003505330.1 KEGG: hps:HPSH_05370 biotin sulfoxide reductase (BisC); PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region YP_003505331.1 KEGG: hso:HS_1672 cytochrome c-type protein YP_003505332.1 KEGG: glo:Glov_1295 hypothetical protein YP_003505333.1 KEGG: glo:Glov_1291 hypothetical protein YP_003505334.1 PFAM: Radical SAM domain protein; KEGG: ccv:CCV52592_2101 radical SAM family protein YP_003505335.1 KEGG: vha:VIBHAR_01582 chaperone protein TorD YP_003505336.1 PFAM: major facilitator superfamily MFS_1; KEGG: glo:Glov_3626 major facilitator superfamily MFS_1 YP_003505337.1 PFAM: outer membrane porin; KEGG: spc:Sputcn32_3385 outer membrane porin YP_003505338.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: glo:Glov_0945 succinate dehydrogenase YP_003505339.1 KEGG: sfu:Sfum_1444 fumarate reductase flavoprotein subunit precursor YP_003505340.1 KEGG: spc:Sputcn32_3384 regulatory protein GntR, HTH; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003505341.1 KEGG: dvm:DvMF_1017 hypothetical protein YP_003505342.1 KEGG: sat:SYN_00857 heat repeat-containing PBS lyase YP_003505344.1 KEGG: avn:Avin_33710 secreted mannuronan C5- epimerase YP_003505345.1 PFAM: metallophosphoesterase; KEGG: gsu:GSU2768 hypothetical protein YP_003505346.1 PFAM: YceI family protein; KEGG: gme:Gmet_3449 YceI YP_003505348.1 PFAM: major facilitator superfamily MFS_1; KEGG: eba:ebA3906 hypothetical protein YP_003505349.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mms:mma_2509 LysR family transcriptional regulator YP_003505350.1 KEGG: lhk:LHK_01116 methyl-accepting chemotaxis sensory transducer precursor; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_003505351.1 KEGG: wsu:WS1017 hypothetical protein YP_003505353.1 KEGG: maq:Maqu_2981 IstB ATP binding domain- containing protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003505354.1 PFAM: Integrase catalytic region; KEGG: psa:PST_3409 ISPsy14, transposase YP_003505355.1 KEGG: tdn:Suden_1833 AAA ATPase; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_003505358.1 PFAM: Integrase catalytic region; KEGG: glo:Glov_3714 integrase catalytic region YP_003505359.1 PFAM: transposase IS3/IS911 family protein; KEGG: bvi:Bcep1808_7228 transposase IS3/IS911 family protein YP_003505360.1 KEGG: sat:SYN_02743 transcriptional regulator YP_003505362.1 KEGG: hap:HAPS_1846 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003505363.1 KEGG: glo:Glov_2897 HipA N-terminal domain protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein YP_003505364.1 PFAM: SEC-C motif domain protein; KEGG: hin:HI0909 preprotein translocase subunit SecA YP_003505365.1 KEGG: mmw:Mmwyl1_4371 hypothetical protein YP_003505366.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dol:Dole_0415 filamentation induced by cAMP protein Fic YP_003505367.1 KEGG: vvu:VV1_2191 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003505368.1 PFAM: HipA domain protein; KEGG: dol:Dole_2637 HipA domain-containing protein YP_003505369.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: bbt:BBta_p0025 putative cAMP-induced filamentation protein YP_003505371.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: geo:Geob_3529 metal dependent phosphohydrolase YP_003505372.1 PFAM: integrase family protein; KEGG: pol:Bpro_0371 phage integrase YP_003505375.1 TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; KEGG: vcj:VCD_003044 type I site-specific deoxyribonuclease HsdR family; SMART: DEAD-like helicase YP_003505376.1 KEGG: vfi:VF_1461 hypothetical protein YP_003505377.1 KEGG: vfi:VF_1462 hypothetical protein YP_003505378.1 KEGG: vfi:VF_1463 hypothetical protein YP_003505379.1 KEGG: vcj:VCD_003045 hypothetical protein YP_003505380.1 PFAM: N-6 DNA methylase; KEGG: fph:Fphi_0190 type I restriction-modification system methyltransferase subunit like protein YP_003505381.1 KEGG: spc:Sputcn32_2894 phage integrase family protein YP_003505384.1 KEGG: neu:NE1587 helix-hairpin-helix DNA-binding motif-containing protein YP_003505385.1 PFAM: transposase IS3/IS911 family protein; KEGG: dde:Dde_3362 transposase (class V) YP_003505386.1 PFAM: Integrase catalytic region; KEGG: pca:Pcar_0539 putative transposase YP_003505387.1 PFAM: Integrase catalytic region; KEGG: pca:Pcar_1347 IS3 putative transposase YP_003505388.1 PFAM: transposase IS3/IS911 family protein; KEGG: dda:Dd703_2340 transposase IS3/IS911 family protein YP_003505389.1 PFAM: glycosyl transferase group 1; KEGG: bbt:BBta_7048 putative O-antigen export system permease protein YP_003505390.1 KEGG: gbm:Gbem_1134 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II YP_003505391.1 TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: sun:SUN_0324 mannose-1-phosphate guanylyltransferase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein YP_003505392.1 PFAM: ABC-2 type transporter; KEGG: ppu:PP_1778 lipopolysaccharide ABC export system, permease protein YP_003505393.1 KEGG: psb:Psyr_0918 ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase YP_003505394.1 KEGG: cjd:JJD26997_1808 hypothetical protein YP_003505395.1 KEGG: cjd:JJD26997_1807 HAD superfamily hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003505396.1 KEGG: cjd:JJD26997_1806 putative nucleotidyltransferase YP_003505397.1 KEGG: cjd:JJD26997_1804 hypothetical protein YP_003505398.1 TIGRFAM: methyltransferase FkbM family; KEGG: pag:PLES_30021 putative non-ribosomal peptide synthetase YP_003505399.1 KEGG: cla:Cla_0308 capsular polysaccharide biosynthesis protein, putative nucleotidyltransferase YP_003505400.1 KEGG: psb:Psyr_0617 hypothetical protein YP_003505401.1 PFAM: glycosyl transferase group 1; KEGG: xcv:XCV3719 bifunctional glycosyltransferase YP_003505402.1 PFAM: glycosyl transferase group 1; KEGG: tdn:Suden_1729 glycosyl transferase, group 1 YP_003505403.1 KEGG: sun:SUN_0342 GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_003505404.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: tdn:Suden_1703 NAD-dependent epimerase/dehydratase YP_003505405.1 PFAM: glycosyl transferase group 1; KEGG: sun:SUN_0344 glycosyl transferase YP_003505406.1 KEGG: sun:SUN_0324 mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase YP_003505407.1 KEGG: geo:Geob_1116 twitching motility protein YP_003505408.1 PFAM: transposase IS3/IS911 family protein; KEGG: dda:Dd703_2340 transposase IS3/IS911 family protein YP_003505409.1 PFAM: Integrase catalytic region; KEGG: pca:Pcar_1347 IS3 putative transposase YP_003505411.1 PFAM: protein of unknown function DUF262; KEGG: pen:PSEEN5223 hypothetical protein YP_003505412.1 PFAM: histidine triad (HIT) protein; KEGG: dvm:DvMF_1561 histidine triad (HIT) protein YP_003505414.1 KEGG: dal:Dalk_1576 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; SMART: response regulator receiver YP_003505415.1 TIGRFAM: metal dependent phophohydrolase; PFAM: Metal-dependent hydrolase HDOD; metal- dependent phosphohydrolase HD sub domain; KEGG: mms:mma_0564 signal transduction protein; SMART: metal-dependent phosphohydrolase HD region YP_003505416.1 KEGG: pub:SAR11_0064 sigma factor SigB regulation protein; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein YP_003505417.1 KEGG: gme:Gmet_1167 ubiquinone/menaquinone biosynthesis methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12 YP_003505418.1 KEGG: sfu:Sfum_0287 UbiD family decarboxylases YP_003505419.1 PFAM: protein of unknown function DUF81; KEGG: pca:Pcar_3013 hypothetical protein YP_003505420.1 SMART: HhH-GPD family protein; iron-sulfur cluster loop; TIGRFAM: endonuclease III; KEGG: sfu:Sfum_1062 endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; iron-sulfur cluster loop YP_003505421.1 PFAM: protein of unknown function DUF111; KEGG: gsu:GSU0141 hypothetical protein YP_003505422.1 PFAM: Hpt domain protein; KEGG: vpa:VP2098 phosphorelay protein YP_003505423.1 KEGG: dvm:DvMF_1141 PAS/PAC sensor hybrid histidine kinase; PFAM: response regulator receiver; SMART: response regulator receiver YP_003505424.1 KEGG: hypothetical protein YP_003505425.1 KEGG: ade:Adeh_2593 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003505426.1 KEGG: dde:Dde_1577 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; SMART: Hpt domain protein; CheW domain protein; ATP- binding region ATPase domain protein YP_003505427.1 KEGG: lip:LI1142 CheY-like receiver; PFAM: response regulator receiver; SMART: response regulator receiver YP_003505428.1 PFAM: MCP methyltransferase CheR-type; KEGG: gur:Gura_3139 protein-glutamate O- methyltransferase; SMART: MCP methyltransferase CheR-type YP_003505429.1 KEGG: dvl:Dvul_1151 heat repeat-containing PBS lyase YP_003505430.1 KEGG: aha:AHA_1038 chemotaxis protein CheY; PFAM: response regulator receiver; SMART: response regulator receiver YP_003505432.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: gme:Gmet_2304 response regulator receiver (CheY-like) modulated CheB methylesterase; SMART: response regulator receiver YP_003505433.1 KEGG: bgl:bglu_2g19940 CheW; PFAM: CheW domain protein; SMART: CheW domain protein YP_003505434.1 KEGG: bgl:bglu_2g19950 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_003505435.1 PFAM: Heat shock protein 70; KEGG: sat:SYN_01983 chaperone protein YP_003505436.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN5552 chromosome partitioning ATPase ParA YP_003505437.1 KEGG: pha:PSHAa2317 heptose 1,7-bisphosphate phosphatase; TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region YP_003505438.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: gbm:Gbem_1228 response regulator receiver modulated diguanylate cyclase; SMART: GGDEF domain containing protein; response regulator receiver YP_003505439.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_2304 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003505440.1 KEGG: abu:Abu_0455 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein YP_003505441.1 PFAM: Metal-dependent hydrolase HDOD; metal- dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_0643 metal dependent phosphohydrolase YP_003505442.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; KEGG: glo:Glov_0595 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003505443.1 PFAM: Extracellular ligand-binding receptor; KEGG: gsu:GSU2389 ABC transporter, periplasmic substrate-binding protein, putative YP_003505444.1 KEGG: hypothetical protein YP_003505445.1 PFAM: flagellin domain protein; flagellin hook IN repeat protein; KEGG: tbd:Tbd_1590 flagellin FliC YP_003505446.1 KEGG: dat:HRM2_22170 EriC2; PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; SMART: CBS domain containing protein YP_003505447.1 PFAM: Methyltransferase type 11; KEGG: pca:Pcar_1066 putative methyltransferase YP_003505448.1 TIGRFAM: homoserine O-acetyltransferase; KEGG: gsu:GSU2462 homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold YP_003505449.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: pca:Pcar_1453 O-acetylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein YP_003505451.1 PFAM: O-antigen polymerase; KEGG: maq:Maqu_0780 O-antigen polymerase YP_003505452.1 PFAM: acriflavin resistance protein; KEGG: dde:Dde_1563 cation/multidrug efflux pump- like YP_003505453.1 KEGG: dde:Dde_1562 secretion protein HlyD YP_003505454.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: bbt:BBta_0924 putative zinc-dependent alcohol dehydrogenase (oxidoreductase) YP_003505455.1 PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: rpa:RPA0030 Sun/nucleolar Nop1/Nop2 YP_003505456.1 PFAM: peptidase M48 Ste24p; KEGG: sat:SYN_03628 endopeptidase HtpX YP_003505457.1 PFAM: protein of unknown function DUF116; KEGG: ppd:Ppro_0512 hypothetical protein YP_003505458.1 KEGG: gbm:Gbem_0635 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein YP_003505459.1 KEGG: sbc:SbBS512_E4495 sensor protein ZraS; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003505460.1 KEGG: dps:DP0376 Ntr family two-component response regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase YP_003505461.1 KEGG: gsu:GSU0790 hypothetical protein YP_003505462.1 KEGG: tdn:Suden_0646 3(2),5 -bisphosphate nucleotidase; TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase YP_003505463.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rhi:NGR_b05450 putative NADH dehydrogenase YP_003505464.1 PFAM: dihydroorotate oxidase; KEGG: dps:DP0769 dihydroorotate dehydrogenase 2 YP_003505465.1 KEGG: gur:Gura_4392 cell divisionFtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase YP_003505466.1 PFAM: Bacitracin resistance protein BacA; KEGG: pca:Pcar_0646 bacitracin resistance protein YP_003505467.1 PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: glo:Glov_3415 beta-lactamase domain protein YP_003505468.1 PFAM: protein of unknown function UPF0126; KEGG: geo:Geob_1194 protein of unknown function UPF0126 YP_003505469.1 PFAM: conserved hypothetical protein; KEGG: nam:NAMH_0881 hypothetical protein YP_003505470.1 PFAM: protein of unknown function DUF344; KEGG: hha:Hhal_1873 hypothetical protein YP_003505471.1 KEGG: ilo:IL0542 dTDP-glucose pyrophosphorylase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase YP_003505472.1 KEGG: sat:SYN_02866 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD YP_003505473.1 PFAM: protein of unknown function DUF520; KEGG: dvu:DVU1981 putative nucleotide-binding protein YP_003505474.1 PFAM: molydopterin dinucleotide-binding region; KEGG: dde:Dde_2090 molybdopterin oxidoreductase domain-containing protein YP_003505475.1 PFAM: thioesterase superfamily protein; KEGG: abo:ABO_0754 hypothetical protein YP_003505476.1 PFAM: thiamine monophosphate synthase; KEGG: hhe:HH1498 hypothetical protein YP_003505477.1 KEGG: gur:Gura_4321 (glutamate--ammonia-ligase) adenylyltransferase; PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase YP_003505478.1 KEGG: rpa:RPA3882 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003505479.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; KEGG: pub:SAR11_1160 phosphomannomutase YP_003505480.1 PFAM: Glycosyl transferase, family 4, conserved region; KEGG: geo:Geob_2139 phospho-N-acetylmuramoyl- pentapeptide-transferase YP_003505481.1 KEGG: mfa:Mfla_2262 UDP-3-O-[3-hydroxymyristoyl] N- acetylglucosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase YP_003505482.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: sat:SYN_00640 replicative DNA helicase; SMART: AAA ATPase YP_003505483.1 KEGG: glo:Glov_2610 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9-like YP_003505484.1 PFAM: regulatory protein RecX; KEGG: pin:Ping_2629 transcriptional regulator for RecA YP_003505485.1 TIGRFAM: recA protein; PFAM: RecA domain protein; KEGG: oan:Oant_1986 recombinase A; SMART: AAA ATPase YP_003505486.1 KEGG: tdn:Suden_1734 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Nucleotidyl transferase YP_003505487.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: nmu:Nmul_A0287 generic methyltransferase YP_003505488.1 PFAM: small multidrug resistance protein; KEGG: nmu:Nmul_A0286 hypothetical protein YP_003505489.1 KEGG: sbp:Sbal223_1475 TDP-4-keto-6-deoxy-D-glucose transaminase; TIGRFAM: TDP-4-keto-6-deoxy-D-glucose transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003505490.1 PFAM: WbqC-like family protein; KEGG: mmw:Mmwyl1_0831 WbqC-like family protein YP_003505491.1 PFAM: formyl transferase domain protein; KEGG: GART; glycinamide ribonucleotide transformylase YP_003505492.1 PFAM: transposase IS3/IS911 family protein; KEGG: bvi:Bcep1808_7228 transposase IS3/IS911 family protein YP_003505493.1 PFAM: Integrase catalytic region; KEGG: glo:Glov_3714 integrase catalytic region YP_003505494.1 KEGG: nam:NAMH_1667 GDP-L-fucose synthase 1 YP_003505495.1 KEGG: fph:Fphi_1247 GDP-D-mannose dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_003505496.1 TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: tdn:Suden_1734 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-6-phosphate isomerase type II YP_003505497.1 KEGG: gem:GM21_2589 phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II YP_003505498.1 PFAM: glycosyl transferase group 1; KEGG: gem:GM21_2593 glycosyl transferase group 1 YP_003505499.1 PFAM: glycosyl transferase family 2; KEGG: pct:PC1_1316 glycosyl transferase family 2 YP_003505500.1 KEGG: gbm:Gbem_3628 competence/damage-inducible protein CinA; TIGRFAM: competence/damage-inducible protein CinA; molybdenum cofactor synthesis domain protein; PFAM: CinA domain protein; molybdopterin binding domain YP_003505501.1 PFAM: phosphatidylglycerophosphatase A; KEGG: pha:PSHAa2368 phosphatidylglycerophosphatase YP_003505502.1 KEGG: maq:Maqu_3171 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4- carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein YP_003505503.1 KEGG: glo:Glov_1020 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; CobB/CobQ domain protein glutamine amidotransferase YP_003505504.1 KEGG: ppd:Ppro_3040 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase YP_003505505.1 KEGG: gur:Gura_1329 hypothetical protein YP_003505506.1 KEGG: dma:DMR_07450 preprotein translocase SecA subunit; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; SEC-C motif domain protein; helicase domain protein YP_003505507.1 PFAM: transposase mutator type; MULE transposase, conserved domain; KEGG: son:SO_0708 transposase mutator family protein YP_003505508.1 KEGG: gsu:GSU0906 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21 YP_003505509.1 SMART: peptidase S16 lon domain protein; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: sfu:Sfum_0098 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5 YP_003505510.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; AAA ATPase central domain protein; Clp ATPase-like; KEGG: gsu:GSU1791 ATP-dependent protease ATP- binding subunit ClpX; SMART: AAA ATPase YP_003505511.1 TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; KEGG: nis:NIS_0165 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14 ClpP YP_003505512.1 KEGG: gem:GM21_3012 trigger factor; TIGRFAM: trigger factor; PFAM: trigger factor domain; trigger factor domain protein; peptidylprolyl isomerase FKBP-type YP_003505513.1 PFAM: protein of unknown function DUF72; KEGG: apa:APP7_1262 hypothetical protein YP_003505514.1 PFAM: aminotransferase class-III; KEGG: gsu:GSU0337 glutamate-1-semialdehyde aminotransferase YP_003505515.1 KEGG: cco:CCC13826_0839 FlhB domain-containing protein YP_003505516.1 KEGG: ppd:Ppro_0435 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003505517.1 KEGG: geo:Geob_0853 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003505518.1 TIGRFAM: pyruvate, phosphate dikinase; KEGG: gur:Gura_3671 pyruvate phosphate dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; PEP- utilizing protein YP_003505519.1 TIGRFAM: glycyl-tRNA synthetase, beta subunit; KEGG: ppd:Ppro_3059 glycine--tRNA ligase YP_003505520.1 KEGG: scl:sce0085 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein YP_003505521.1 KEGG: scl:sce0086 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein YP_003505522.1 KEGG: gem:GM21_0267 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003505523.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: gme:Gmet_2425 diguanylate cyclase; SMART: GGDEF domain containing protein YP_003505524.1 PFAM: permease; KEGG: swd:Swoo_1498 permease YP_003505525.1 PFAM: glutamine amidotransferase class-I; KEGG: aav:Aave_0325 glutamine amidotransferase class-I YP_003505526.1 KEGG: sbp:Sbal223_1809 hypothetical protein YP_003505527.1 PFAM: Integrase catalytic region; KEGG: sat:SYN_01900 transposase YP_003505528.1 KEGG: sat:SYN_01899 IstB-like ATP binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003505529.1 PFAM: transposase mutator type; MULE transposase, conserved domain; KEGG: son:SO_0708 transposase mutator family protein YP_003505530.1 KEGG: sbp:Sbal223_1809 hypothetical protein YP_003505531.1 KEGG: avn:Avin_32020 hypothetical protein YP_003505532.1 KEGG: afr:AFE_0685 death-on-curing family protein; TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic YP_003505533.1 KEGG: gur:Gura_4307 chaperonin GroEL; TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1 YP_003505534.1 PFAM: chaperonin Cpn10; KEGG: sat:SYN_00062 co-chaperonin YP_003505535.1 PFAM: Silent information regulator protein Sir2; KEGG: sat:SYN_01020 Sir2 family NAD-dependent deacetylase YP_003505536.1 PFAM: histidine triad (HIT) protein; KEGG: dde:Dde_1973 HIT family protein YP_003505537.1 KEGG: sat:SYN_02932 hypothetical protein YP_003505538.1 KEGG: vsa:VSAL_I2224 tetratricopeptide repeat protein YP_003505539.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS IV domain protein; MutS III domain protein; KEGG: pca:Pcar_1510 DNA mismatch repair protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein YP_003505541.1 PFAM: beta-lactamase domain protein; KEGG: gsu:GSU1631 metallo-beta-lactamase family protein YP_003505542.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; KEGG: ppd:Ppro_0501 UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; 4-diphosphocytidyl- 2C-methyl-D-erythritol synthase YP_003505543.1 PFAM: cell wall hydrolase/autolysin; KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin YP_003505544.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: pca:Pcar_0087 excinuclease ABC, A subunit; SMART: AAA ATPase YP_003505545.1 PFAM: protein of unknown function DUF342; KEGG: dde:Dde_1534 polymerase YP_003505546.1 KEGG: scl:sce7931 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein YP_003505547.1 PFAM: Radical SAM domain protein; KEGG: dat:HRM2_33150 FbiC1 YP_003505548.1 KEGG: dvl:Dvul_0154 flagellar biosynthetic protein FliR; TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein YP_003505549.1 KEGG: dal:Dalk_1004 flagellar biosynthetic protein FlhB; TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter YP_003505550.1 KEGG: pca:Pcar_1162 flagellar biosynthesis protein FlhA; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein YP_003505551.1 TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; KEGG: glo:Glov_3285 GTP-binding signal recognition particle SRP54 G-domain; SMART: AAA ATPase YP_003505552.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dal:Dalk_1001 cobyrinic acid ac-diamide synthase YP_003505554.1 KEGG: gme:Gmet_0429 sigma 28 (flagella/sporulation); TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_003505555.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: dvu:DVU2078 protein-glutamate methylesterase CheB; SMART: response regulator receiver YP_003505556.1 KEGG: ccv:CCV52592_1439 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein YP_003505557.1 KEGG: tdn:Suden_0708 flagellar motor switch protein FliY; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein YP_003505558.1 KEGG: cjd:JJD26997_0603 chemotaxis protein CheY; PFAM: response regulator receiver; SMART: response regulator receiver YP_003505559.1 KEGG: vfi:VF_1832 chemotaxis regulator CheZ, protein phosphatase for CheY YP_003505560.1 KEGG: cla:Cla_1369 chemotaxis protein CheA; PFAM: CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; response regulator receiver; ATP-binding region ATPase domain protein; SMART: CheW domain protein; response regulator receiver; Hpt domain protein; ATP-binding region ATPase domain protein YP_003505561.1 PFAM: OmpA/MotB domain protein; KEGG: mlo:mlr2348 hypothetical protein YP_003505563.1 KEGG: geo:Geob_0264 putative PAS/PAC sensor protein; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein YP_003505564.1 KEGG: pca:Pcar_1874 anti-anti-sigma regulatory factor; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS YP_003505565.1 KEGG: geo:Geob_2165 PBS lyase heat domain protein repeat-containing protein; PFAM: PBS lyase HEAT domain protein repeat- containing protein; SMART: PBS lyase HEAT domain protein repeat- containing protein YP_003505566.1 PFAM: MCP methyltransferase CheR-type; KEGG: dvm:DvMF_0778 MCP methyltransferase, CheR- type; SMART: MCP methyltransferase CheR-type YP_003505567.1 KEGG: NST1; Nst1p YP_003505569.1 KEGG: similar to Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle myosin heavy chain IIa) (NMHC II-a) (Cellular myosin heavy chain, type A) (Nonmuscle myosin heavy chain-A) (NMMHC-A) YP_003505570.1 KEGG: hypothetical protein YP_003505571.1 PFAM: MscS Mechanosensitive ion channel; KEGG: tdn:Suden_1739 MscS mechanosensitive ion channel YP_003505572.1 PFAM: ferredoxin; KEGG: sse:Ssed_2277 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF YP_003505573.1 KEGG: ppd:Ppro_0435 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003505574.1 KEGG: mlo:mlr0402 RNA-binding protein Hfq; TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core YP_003505575.1 SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; KEGG: pca:Pcar_0002 DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain YP_003505576.1 KEGG: fph:Fphi_1871 DNA replication and repair protein RecF YP_003505577.1 SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; TIGRFAM: DNA gyrase, B subunit; KEGG: gur:Gura_0004 DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein YP_003505578.1 SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA gyrase, A subunit; KEGG: gur:Gura_0005 DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_003505579.1 KEGG: cco:CCC13826_0832 tetrahydrofolate dehydrogenase/cyclohydrolase NAD(P)-binding domain- containing protein; PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase YP_003505580.1 KEGG: sat:SYN_01016 tRNA synthase; TIGRFAM: tRNA modification GTPase TrmE; small GTP- binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; GTP-binding protein TrmE-like YP_003505581.1 KEGG: gur:Gura_4427 tRNA uridine 5- carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A YP_003505582.1 KEGG: hha:Hhal_0001 methyltransferase GidB; TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein YP_003505584.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_2297 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003505585.1 KEGG: gsu:GSU1149 EAL domain-containing protein; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein YP_003505586.1 KEGG: gme:Gmet_3027 IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR YP_003505587.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: gur:Gura_2373 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein YP_003505588.1 PFAM: aminotransferase class I and II; KEGG: sat:SYN_02699 aminotransferase YP_003505589.1 KEGG: avi:Avi_0571 hypothetical protein YP_003505590.1 KEGG: sat:SYN_00791 GTP-binding protein EngA; TIGRFAM: ribosome-associated GTPase EngA; small GTP- binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein YP_003505592.1 KEGG: gsu:GSU0156 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase YP_003505593.1 TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; KEGG: ppd:Ppro_1403 chaperone protein DnaJ; SMART: heat shock protein DnaJ domain protein YP_003505594.1 KEGG: gme:Gmet_3532 molecular chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70 YP_003505595.1 PFAM: GrpE protein; KEGG: ppr:PBPRA0696 putative heat shock protein GrpE YP_003505596.1 KEGG: gme:Gmet_3534 heat-inducible transcription repressor HrcA; TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein YP_003505597.1 PFAM: Silent information regulator protein Sir2; KEGG: nis:NIS_0515 Sir2 family transcriptional regulator YP_003505599.1 KEGG: scl:sce5745 transcriptional regulator; PFAM: aminotransferase class I and II; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003505600.1 TIGRFAM: glutamate racemase; KEGG: gem:GM21_0260 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_003505601.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: sfu:Sfum_2209 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_003505602.1 PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2298 transposase IS4 family protein YP_003505603.1 KEGG: dde:Dde_3311 ABC-type sugar transport system, periplasmic component YP_003505604.1 KEGG: dat:HRM2_40820 hypothetical protein YP_003505605.1 PFAM: domain of unknown function DUF1731; NAD- dependent epimerase/dehydratase; KEGG: dal:Dalk_2335 domain of unknown function DUF1731 YP_003505606.1 TIGRFAM: phosphate acetyltransferase; KEGG: geo:Geob_1625 phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase YP_003505607.1 KEGG: gme:Gmet_1034 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase YP_003505608.1 TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; KEGG: sfu:Sfum_0993 Holliday junction DNA helicase B; SMART: AAA ATPase YP_003505609.1 KEGG: sat:SYN_00982 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase YP_003505610.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dvm:DvMF_2816 short-chain dehydrogenase/reductase SDR YP_003505611.1 PFAM: Uncharacterised conserved protein UCP018688; KEGG: dat:HRM2_23720 hypothetical protein YP_003505612.1 PFAM: cytochrome c assembly protein; KEGG: pca:Pcar_3065 cytochrome c biogenesis protein YP_003505613.1 TIGRFAM: glutamyl-tRNA reductase; KEGG: ppd:Ppro_3377 glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like YP_003505614.1 TIGRFAM: porphobilinogen deaminase; KEGG: vfm:VFMJ11_0064 porphobilinogen deaminase; PFAM: Porphobilinogen deaminase YP_003505615.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: dds:Ddes_2207 uroporphyrin-III C- methyltransferase YP_003505616.1 KEGG: gme:Gmet_0189 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase YP_003505617.1 PFAM: protein of unknown function DUF815; KEGG: hch:HCH_05795 ATPase YP_003505618.1 KEGG: bph:Bphy_7770 hypothetical protein YP_003505619.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; KEGG: wsu:WS1328 putative two-component sensor; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein YP_003505620.1 KEGG: hch:HCH_01618 signal transduction histidine kinase regulating C4-dicarboxylate transport system; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003505621.1 PFAM: NUDIX hydrolase; KEGG: sew:SeSA_A1395 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase YP_003505622.1 KEGG: ank:AnaeK_2336 phosphoglycerate kinase; PFAM: phosphoglycerate kinase YP_003505623.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: geo:Geob_2897 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_003505624.1 KEGG: viral A-type inclusion protein YP_003505625.1 KEGG: mca:MCA1124 competence protein F YP_003505626.1 TIGRFAM: phosphoglycerate mutase, 2,3- bisphosphoglycerate-independent; KEGG: afw:Anae109_0257 phosphoglyceromutase; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein YP_003505627.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: gem:GM21_0631 transcriptional regulator, TraR/DksA family YP_003505628.1 PFAM: protein of unknown function DUF163; KEGG: afw:Anae109_0254 hypothetical protein YP_003505629.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: acp:A2cp1_2368 RNA methyltransferase, TrmH family, group 3 YP_003505630.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: sfu:Sfum_1302 transketolase YP_003505631.1 PFAM: regulatory protein TetR; KEGG: dat:HRM2_33660 transcriptional regulator (TetR family protein) YP_003505632.1 SMART: Tetratricopeptide repeat; KEGG: dal:Dalk_2169 tetratricopeptide TPR_2 repeat protein YP_003505633.1 KEGG: dat:HRM2_40640 TtuD; PFAM: MOFRL domain protein YP_003505634.1 PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1629 heptosyltransferase family protein YP_003505635.1 PFAM: glycosyl transferase family 9; KEGG: lip:LI0698 ADP-heptose:LPS heptosyltransferase II YP_003505636.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dps:DP0198 hypothetical protein YP_003505637.1 PFAM: protein of unknown function DUF81; KEGG: glo:Glov_0075 protein of unknown function DUF81 YP_003505639.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gur:Gura_3041 enoyl-CoA hydratase/isomerase YP_003505640.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: geo:Geob_3141 enoyl-CoA hydratase/isomerase YP_003505641.1 KEGG: dal:Dalk_1586 transcriptional regulator, TraR/DksA family YP_003505642.1 PFAM: Auxin Efflux Carrier; KEGG: tau:Tola_2495 auxin efflux carrier YP_003505643.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: dps:DP2053 hypothetical protein YP_003505644.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dat:HRM2_38390 HTH-type transcriptional regulator (LysR family protein) YP_003505645.1 PFAM: adenylate cyclase; KEGG: neu:NE1496 hypothetical protein YP_003505646.1 PFAM: NUDIX hydrolase; KEGG: pla:Plav_0901 NUDIX hydrolase YP_003505647.1 PFAM: dihydroorotate oxidase; KEGG: dps:DP0769 dihydroorotate dehydrogenase 2 YP_003505648.1 PFAM: PfkB domain protein; KEGG: tgr:Tgr7_0095 PfkB domain protein YP_003505649.1 KEGG: tgr:Tgr7_0708 sucrose-phosphate synthase; TIGRFAM: sucrose-phosphate synthase; HAD- superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; glycosyl transferase group 1; Haloacid dehalogenase domain protein hydrolase type 3 YP_003505650.1 KEGG: tgr:Tgr7_0177 sucrose synthase; PFAM: sucrose synthase; glycosyl transferase group 1 YP_003505651.1 KEGG: gur:Gura_4031 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5 YP_003505652.1 KEGG: abu:Abu_1637 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; SMART: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3 YP_003505653.1 KEGG: sat:SYN_02350 hypothetical protein YP_003505654.1 PFAM: Protein of unknown function DUF2078, membrane; KEGG: tcx:Tcr_1579 hypothetical protein YP_003505656.1 KEGG: geo:Geob_2906 signal peptide peptidase SppA, 36K type; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; peptidase S14 ClpP YP_003505657.1 PFAM: sodium/calcium exchanger membrane region; KEGG: rfr:Rfer_3080 sodium/calcium exchanger membrane protein YP_003505658.1 TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; KEGG: pca:Pcar_1882 30S ribosomal protein S1; PFAM: LytB protein; RNA binding S1 domain protein YP_003505659.1 KEGG: glo:Glov_2147 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_003505660.1 TIGRFAM: 3-phosphoshikimate 1- carboxyvinyltransferase; KEGG: gme:Gmet_0864 3-phosphoshikimate 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase) YP_003505661.1 PFAM: Prephenate dehydrogenase; KEGG: glo:Glov_2149 prephenate dehydrogenase YP_003505662.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: sfu:Sfum_3766 phospho-2-dehydro-3- deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_003505663.1 KEGG: maq:Maqu_1024 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II YP_003505664.1 KEGG: gur:Gura_1462 prephenate dehydratase; TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; Chorismate mutase YP_003505667.1 TIGRFAM: tRNA pseudouridine synthase A; KEGG: sat:SYN_01395 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain YP_003505668.1 KEGG: sat:SYN_00208 ABC-type cobalt transport system, permease component YP_003505669.1 KEGG: dma:DMR_21750 sec-independent protein translocase protein TatA/E; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106 YP_003505670.1 KEGG: geo:Geob_3094 apolipoprotein N- acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003505671.1 PFAM: FeoA family protein; KEGG: dal:Dalk_1640 ferric uptake regulator, Fur family YP_003505672.1 PFAM: ferric-uptake regulator; KEGG: dde:Dde_2676 ferric uptake regulator family protein YP_003505673.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: pca:Pcar_1672 hypothetical protein YP_003505674.1 KEGG: tau:Tola_1997 hypothetical protein YP_003505675.1 KEGG: bba:Bd0348 acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_003505676.1 KEGG: bba:Bd0347 hypothetical protein YP_003505677.1 PFAM: glycosyl transferase group 1; KEGG: dat:HRM2_01820 putative glycosyl transferase, group 1 family protein YP_003505678.1 PFAM: Radical SAM domain protein; KEGG: dal:Dalk_1177 radical SAM domain protein YP_003505679.1 KEGG: sfu:Sfum_2734 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003505680.1 PFAM: ABC-3 protein; KEGG: cff:CFF8240_1727 cation ABC transporter, permease protein YP_003505681.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: geo:Geob_0454 cobyrinic acid ac-diamide synthase YP_003505682.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: gur:Gura_4257 ParB-like partition protein; SMART: ParB domain protein nuclease YP_003505683.1 PFAM: protein of unknown function DUF583; KEGG: pca:Pcar_3137 hypothetical protein YP_003505684.1 KEGG: pca:Pcar_1333 triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase YP_003505685.1 KEGG: sat:SYN_03791 protein translocase subunit; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit YP_003505686.1 PFAM: extracellular solute-binding protein family 5; KEGG: sat:SYN_00608 oligopeptide-binding protein YP_003505687.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: glo:Glov_2033 binding-protein-dependent transport systems inner membrane component YP_003505688.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gsu:GSU1435 peptide ABC transporter, permease protein YP_003505689.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: dma:DMR_27280 response regulator receiver protein YP_003505690.1 KEGG: gme:Gmet_0119 hydrogenase maturation protein HypF; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein YP_003505691.1 KEGG: dde:Dde_2029 K+ transporter trk; TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter YP_003505692.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dal:Dalk_0380 potassium transporter peripheral membrane component YP_003505693.1 PFAM: Fmu (Sun) domain protein; KEGG: vsp:VS_1411 rRNA (cytosine-C(5)-)- methyltransferase RsmF YP_003505694.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dol:Dole_2204 hypothetical protein YP_003505695.1 KEGG: dol:Dole_2202 hypothetical protein YP_003505696.1 PFAM: acylphosphatase; KEGG: scl:sce7933 acylphosphatase YP_003505697.1 KEGG: sfu:Sfum_2776 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC YP_003505698.1 TIGRFAM: thiamine-phosphate pyrophosphorylase; KEGG: rle:pRL110442 putative thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_003505699.1 TIGRFAM: thiamine-monophosphate kinase; KEGG: gsu:GSU3194 thiamine monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003505700.1 KEGG: nam:NAMH_0989 coenzyme f390 synthetase II YP_003505701.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: ade:Adeh_0724 GPR1/FUN34/YaaH YP_003505703.1 PFAM: Phosphoglycerate mutase; KEGG: nis:NIS_1147 phosphohistidine phosphatase YP_003505704.1 PFAM: CHAD domain containing protein; KEGG: neu:NE1494 hypothetical protein YP_003505705.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: csa:Csal_1494 cobyrinic acid a,c-diamide synthase YP_003505706.1 PFAM: Ppx/GppA phosphatase; KEGG: gem:GM21_1994 Ppx/GppA phosphatase YP_003505707.1 KEGG: scl:sce5606 hypothetical protein YP_003505708.1 KEGG: cha:CHAB381_1724 polyphosphate kinase; PFAM: Polyphosphate kinase YP_003505710.1 KEGG: ppd:Ppro_3055 imidazole glycerol phosphate synthase subunit HisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein YP_003505711.1 KEGG: gur:Gura_4052 phosphoribosyl-ATP pyrophosphohydrolase; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; MazG nucleotide pyrophosphohydrolase YP_003505712.1 PFAM: protein of unknown function DUF177; KEGG: sat:SYN_02362 zinc finger protein YP_003505713.1 KEGG: sfu:Sfum_1369 ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein YP_003505714.1 KEGG: gem:GM21_1153 fatty acid/phospholipid synthesis protein PlsX; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein YP_003505715.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: geo:Geob_2612 3-oxoacyl-(acyl-carrier- protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III YP_003505716.1 KEGG: pca:Pcar_1437 malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase YP_003505717.1 KEGG: glo:Glov_1936 3-oxoacyl-(acyl-carrier- protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein YP_003505718.1 KEGG: rlg:Rleg_1201 acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding YP_003505719.1 KEGG: dar:Daro_2019 3-oxoacyl-(acyl carrier protein) synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase YP_003505720.1 SMART: ribonuclease III; double-stranded RNA binding domain protein; TIGRFAM: ribonuclease III; KEGG: gem:GM21_1060 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein YP_003505721.1 KEGG: dps:DP1246 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003505722.1 KEGG: pub:SAR11_0154 N6-adenine-specific methylase; TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative YP_003505723.1 TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; KEGG: pcr:Pcryo_0359 coenzyme A biosynthesis protein; PFAM: cytidylyltransferase YP_003505724.1 KEGG: vfi:VF_1697 latent nuclear antigen; PFAM: response regulator receiver; SMART: response regulator receiver YP_003505725.1 TIGRFAM: phosphoribosylformylglycinamidine cyclo- ligase; KEGG: pca:Pcar_1293 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003505726.1 KEGG: gsu:GSU1759 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein YP_003505727.1 PFAM: peptidase M16 domain protein; KEGG: bov:BOV_A0188 zinc protease