-- dump date 20140619_060417 -- class Genbank::CDS -- table cds_note -- id note YP_004169330.1 COGs: COG0593 ATPase involved in DNA replication initiation; HAMAP: Chromosomal replication control, initiator DnaA; InterPro IPR001957: IPR003593: IPR013159: IPR013317; KEGG: dge:Dgeo_0001 chromosomal replication initiation protein; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal; SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; SPTR: Chromosomal replication initiator protein dnaA; TIGRFAM: Chromosomal replication control, initiator DnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA YP_004169331.1 COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001: IPR022634: IPR022637: IPR022635; KEGG: ddr:Deide_00020 DNA-directed DNA polymerase (DNA polymerase III, beta subunit); PFAM: DNA polymerase III, beta chain, N-terminal; DNA polymerase III, beta chain, central; DNA polymerase III, beta chain, C-terminal; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III, beta chain; SPTR: DNA-directed DNA polymerase (DNA polymerase III, beta subunit); TIGRFAM: DNA polymerase III, beta chain; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit YP_004169332.1 COGs: COG0148 Enolase; HAMAP: Enolase; InterPro IPR000941: IPR020811: IPR020810; KEGG: dge:Dgeo_0004 phosphopyruvate hydratase; PFAM: Enolase, C-terminal; Enolase, N-terminal; PRIAM: Phosphopyruvate hydratase; SPTR: Enolase; TIGRFAM: Enolase; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase YP_004169333.1 COGs: COG0469 Pyruvate kinase; InterPro IPR001697: IPR015793: IPR015795; KEGG: dge:Dgeo_0005 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, C-terminal-like; PRIAM: Pyruvate kinase; SPTR: Pyruvate kinase; TIGRFAM: Pyruvate kinase; PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase YP_004169334.1 COGs: COG0162 tyrosyl-tRNA synthetase; HAMAP: tyrosyl-tRNA synthetase, class Ib; InterPro IPR002307: IPR002942: IPR002305; KEGG: ddr:Deide_00050 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4; PRIAM: tyrosine--tRNA ligase; SMART: RNA-binding S4; SPTR: tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase, class Ib; PFAM: S4 domain; tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase YP_004169335.1 COGs: COG2258 conserved hypothetical protein; InterPro IPR005302; KEGG: dge:Dgeo_0007 MOSC domain-containing protein; PFAM: Molybdenum cofactor sulfurase, C-terminal; SPTR: MOSC domain protein; PFAM: MOSC domain YP_004169336.1 COGs: COG2862 membrane protein; InterPro IPR005134; KEGG: dge:Dgeo_0008 hypothetical protein; PFAM: Uncharacterised protein family UPF0114; SPTR: Uncharacterized protein UPF0114; PFAM: Uncharacterized protein family, UPF0114 YP_004169337.1 COGs: COG2384 SAM-dependent methyltransferase; InterPro IPR006901; KEGG: dge:Dgeo_0009 hypothetical protein; PFAM: Protein of unknown function DUF633; SPTR: uncharacterized protein; PFAM: Family of unknown function (DUF633) YP_004169338.1 COGs: COG2374 extracellular nuclease; InterPro IPR022409: IPR005135: IPR000601; KEGG: dge:Dgeo_0972 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; PKD domain; SMART: PKD/Chitinase domain; SPTR: Extracellular nuclease containing Fibronectin III domain; PFAM: Endonuclease/Exonuclease/phosphatase family; PKD domain YP_004169339.1 COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR006034; KEGG: dra:DR_2353 L-asparaginase; PFAM: Asparaginase/glutaminase; PRIAM: Asparaginase; SMART: Asparaginase/glutaminase; SPTR: Probable L-asparaginase; PFAM: Asparaginase YP_004169340.1 InterPro IPR001647; KEGG: sma:SAV_448 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family YP_004169341.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: rso:RSc3335 hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: nad-dependent epimerase/dehydratase; protein; PFAM: NAD dependent epimerase/dehydratase family YP_004169342.1 COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004408: IPR004143: IPR003142; KEGG: dge:Dgeo_2140 bifunctional BirA, biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Biotin protein ligase, C-terminal; SPTR: Bifunctional BirA, biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin protein ligase C terminal domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region; BirA biotin operon repressor domain YP_004169343.1 COGs: COG1268 conserved hypothetical protein; InterPro IPR003784; KEGG: cyb:CYB_1048 BioY family protein; PFAM: BioY protein; SPTR: BioY family protein; PFAM: BioY family YP_004169344.1 COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: ddr:Deide_23321 phosphoribosylanthranilate isomerase (N-(5-phosphoribosyl)anthranilate isomerase); PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); PRIAM: Phosphoribosylanthranilate isomerase; SPTR: N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase YP_004169345.1 COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: dge:Dgeo_2262 DNA polymerase III subunit, SPTR: DNA polymerase III subunit, ; TIGRFAM: DNA polymerase III, delta' subunit YP_004169346.1 InterPro IPR004843; KEGG: ddr:Deide_21720 phosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: phosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_004169347.1 COGs: COG2071 glutamine amidotransferase; InterPro IPR011697; KEGG: ddr:Deide_2p01920 glutamine amidotransferase; PFAM: Peptidase C26; SPTR: glutamine amidotransferase; PFAM: Peptidase C26 YP_004169348.1 KEGG: dge:Dgeo_2325 hypothetical protein; SPTR: uncharacterized protein YP_004169349.1 COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR004559: IPR006638: IPR007197: IPR010723; KEGG: ddr:Deide_22700 coproporphyrinogen dehydrogenase (oxygen-independent coproporphyrinogen-III oxidase); PFAM: HemN, C-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Coproporphyrinogen dehydrogenase (Oxygen-independent coproporphyrinogen-III oxidase); TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase YP_004169350.1 COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR006321: IPR003593: IPR001482; KEGG: ddr:Deide_19600 twitching mobility protein; PFAM: Type II secretion system protein E; SMART: ATPase, AAA+ type, core; SPTR: Twitching mobility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT YP_004169351.1 COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR007831: IPR001482; KEGG: dge:Dgeo_0263 type II secretion system protein E; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; SPTR: Tfp pilus assembly pathway, ATPase PilB; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain YP_004169352.1 COGs: COG2179 hydrolase of the HAD superfamily; InterPro IPR010021: IPR006549: IPR005834; KEGG: dge:Dgeo_0262 HAD family phosphatase; PFAM: haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily phosphatase subfamily IIIA; TIGRFAM: HAD-superfamily phosphatase, subfamily IIIA; HAD-superfamily hydrolase, subfamily IIIA; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 YP_004169353.1 COGs: COG1496 conserved hypothetical protein; InterPro IPR003730; KEGG: dge:Dgeo_0261 hypothetical protein; PFAM: Multi-copper polyphenol oxidoreductase, laccase; SPTR: uncharacterized protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family YP_004169354.1 COGs: COG0623 enoyl-ACP; InterPro IPR002198; KEGG: dge:Dgeo_0260 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: enoyl-ACP reductase (NADH); SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004169355.1 COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: dge:Dgeo_0298 peptidase M42; PFAM: Peptidase M42; SPTR: Peptidase M42; PFAM: M42 glutamyl aminopeptidase YP_004169356.1 KEGG: sjp:SJA_C2-01770 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2945) YP_004169358.1 COGs: COG3483 tryptophan 2 3-dioxygenase (vermilion); InterPro IPR017485: IPR004981; KEGG: ddr:Deide_2p01440 tryptophan 2,3-dioxygenase; PFAM: tryptophan 2,3-dioxygenase; SPTR: tryptophan 2,3-dioxygenase; TIGRFAM: tryptophan 2,3-dioxygenase, bacteria; PFAM: tryptophan 2,3-dioxygenase; TIGRFAM: tryptophan 2,3-dioxygenase YP_004169359.1 KEGG: dge:Dgeo_1823 hypothetical protein; SPTR: uncharacterized protein YP_004169360.1 KEGG: dge:Dgeo_1824 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1282) YP_004169361.1 COGs: COG0556 Helicase subunit of the DNA excision repair complex; HAMAP: Excinuclease ABC, B subunit; InterProIPR004807: IPR014001: IPR001650: IPR006935: IPR 001943; KEGG: dge:Dgeo_1890 excinuclease ABC subunit B; PFAM: Helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: UvrABC system protein B; TIGRFAM: Excinuclease ABC, B subunit; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit YP_004169362.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: tra:Trad_1635 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein; SPTR: MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004169363.1 KEGG: dra:DR_1820 hypothetical protein; SPTR: uncharacterized protein YP_004169364.1 COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR006054: IPR006055: IPR013520; KEGG: dge:Dgeo_1818 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; SPTR: DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family YP_004169365.1 COGs: COG4293 conserved hypothetical protein; InterPro IPR014923; KEGG: dge:Dgeo_2040 hypothetical protein; PFAM: Protein of unknown function DUF1802; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1802) YP_004169366.1 KEGG: dpe:Dper_GL10673 GL10673 gene product from transcript GL10673-RA; SPTR: GL10673 YP_004169367.1 InterPro IPR002559; KEGG: dge:Dgeo_2276 transposase, IS4; PFAM: Transposase, IS4-like; SPTR: Transposase, IS4; PFAM: Transposase DDE domain YP_004169368.1 InterPro IPR012902; KEGG: dra:DR_0548 pilin, type IV, SPTR: Pilin, type IV, ; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004169369.1 COGs: COG0740 Protease subunit of ATP-dependent Clp protease; HAMAP: Peptidase S14, ClpP; InterPro IPR001907; KEGG: dge:Dgeo_2151 ATP-dependent Clp protease proteolytic subunit; PFAM: Peptidase S14, ClpP; PRIAM: Endopeptidase Clp; SPTR: ATP-dependent Clp protease proteolytic subunit; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP YP_004169370.1 COGs: COG1219 ATP-dependent protease Clp ATPase subunit; HAMAP: Clp protease, ATP-binding subunit ClpX; InterProIPR004487: IPR003593: IPR010603: IPR013093: IPR 019489; KEGG: dge:Dgeo_2152 ATP-dependent protease ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent Clp protease ATP-binding subunit ClpX; TIGRFAM: Clp protease, ATP-binding subunit ClpX; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX) YP_004169371.1 COGs: COG0466 ATP-dependent Lon protease; InterProIPR004815: IPR003111: IPR003593: IPR003959: IPR 008269; KEGG: ddr:Deide_19590 ATP-dependent protease La; PFAM: Peptidase S16, Lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core; PRIAM: Endopeptidase La; SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; SPTR: ATP-dependent protease La; TIGRFAM: Peptidase S16, ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La YP_004169372.1 COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR006055: IPR013520; KEGG: dge:Dgeo_0157 exonuclease, RNase T and DNA polymerase III; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; SPTR: Exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T; manually curated; PFAM: Exonuclease YP_004169373.1 COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit; InterPro IPR004413: IPR018027: IPR006075; KEGG: dge:Dgeo_0414 aspartyl/glutamyl-tRNA amidotransferase subunit B; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Asn/Gln amidotransferase; SMART: Asn/Gln amidotransferase; SPTR: Glutamyl-tRNA(Gln) amidotransferase, B subunit; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit YP_004169374.1 KEGG: dge:Dgeo_2082 hypothetical protein; SPTR: uncharacterized protein YP_004169375.1 COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR004839; KEGG: dge:Dgeo_2084 aminotransferase, class I and II; PFAM: Aminotransferase, class I/classII; PRIAM: Kynurenine--oxoglutarate transaminase; SPTR: Aminotransferase; PFAM: Aminotransferase class I and II YP_004169376.1 COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR000771: IPR011289; KEGG: ddr:Deide_22060 fructose-bisphosphate aldolase (fructose-1,6-bisphosphate triosephosphate-lyase, aldolase); PFAM: Ketose-bisphosphate aldolase, class-II; PRIAM: Fructose-bisphosphate aldolase; SPTR: fructose-bisphosphate aldolase (Fructose-1,6-bisphosphate triosephosphate-lyase, Aldolase); TIGRFAM: Fructose-1,6-bisphosphate aldolase, class 2; Ketose-bisphosphate aldolase, class-II; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist YP_004169377.1 KEGG: dge:Dgeo_2082 hypothetical protein; SPTR: uncharacterized protein YP_004169378.1 KEGG: ddr:Deide_23280 hypothetical protein; SPTR: uncharacterized protein YP_004169379.1 KEGG: ddr:Deide_20060 hypothetical protein; SPTR: uncharacterized protein YP_004169380.1 KEGG: dge:Dgeo_2093 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3006) YP_004169381.1 InterPro IPR013344: IPR013509: IPR000788; KEGG: ddr:Deide_04660 ribonucleoside-diphosphate reductase; PFAM: ribonucleotide reductase large subunit, C-terminal; ribonucleotide reductase large subunit, N-terminal; PRIAM: ribonucleoside-diphosphate reductase; SPTR: ribonucleoside-diphosphate reductase; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase, all-alpha domain; ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent YP_004169382.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR023210; KEGG: rrs:RoseRS_4538 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain; PRIAM: Aryl-alcohol dehydrogenase (NADP(+)); SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase family YP_004169383.1 InterPro IPR002121: IPR000277; KEGG: dge:Dgeo_0021 HRDC; PFAM: Helicase/RNase D C-terminal, HRDC domain; Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; SMART: Helicase/RNase D C-terminal, HRDC domain; SPTR: Cys/Met metabolism PLP-dependent enzyme containing HRDC domain; PFAM: HRDC domain YP_004169384.1 COGs: COG5339 conserved hypothetical protein; InterPro IPR010352; KEGG: dra:DR_2196 hypothetical protein; PFAM: Protein of unknown function DUF945; SPTR: uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF945) YP_004169385.1 COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: dge:Dgeo_2234 tRNA (guanosine-2'-O-)-methyltransferase; PFAM: tRNA/rRNA methyltransferase, SpoU; PRIAM: tRNA guanosine-2'-O-methyltransferase; SPTR: tRNA (Guanosine-2'-O-)-methyltransferase; PFAM: SpoU rRNA Methylase family; SpoU, rRNA methylase, C-terminal YP_004169386.1 COGs: COG3635 phosphoglycerate mutase AP superfamily; InterPro IPR019304: IPR006124; KEGG: dra:DR_2227 cofactor-independent phosphoglycerate mutase; PFAM: Bisphosphoglycerate-independent phosphoglycerate mutase; Metalloenzyme; PRIAM: Phosphoglycerate mutase; SPTR: Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; PFAM: Metalloenzyme superfamily; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form YP_004169387.1 COGs: COG1228 imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: aba:Acid345_0971 amidohydrolase 3; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase 3; PFAM: Amidohydrolase family YP_004169388.1 KEGG: dra:DR_0104 hypothetical protein; SPTR: uncharacterized protein YP_004169389.1 COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: dge:Dgeo_0098 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004169390.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000994; KEGG: ddr:Deide_01410 Xaa-Pro aminopeptidase; PFAM: Peptidase M24, structural domain; SPTR: Xaa-pro aminopeptidase; PFAM: Metallopeptidase family M24 YP_004169391.1 COGs: COG0316 conserved hypothetical protein; InterPro IPR016092: IPR000361; KEGG: dge:Dgeo_0323 HesB/YadR/YfhF; PFAM: FeS cluster biogenesis; SPTR: HesB/YadR/YfhF; TIGRFAM: FeS cluster insertion; PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein YP_004169392.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: dge:Dgeo_0324 extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: ABC-type oligopeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_004169393.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dge:Dgeo_0325 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type oligopeptide transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004169394.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dge:Dgeo_0326 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type dipeptide transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004169395.1 COGs: COG0817 Holliday junction resolvasome endonuclease subunit; HAMAP: Crossover junction endodeoxyribonuclease RuvC; InterPro IPR002176; KEGG: ddr:Deide_20630 crossover junction endodeoxyribonuclease (Holliday junction resolvase); PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: Crossover junction endodeoxyribonuclease ruvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC YP_004169396.1 COGs: COG2339 membrane protein; KEGG: dge:Dgeo_0328 membrane protein-like protein; SPTR: Membrane protein YP_004169397.1 COGs: COG0314 Molybdopterin converting factor large subunit; InterPro IPR010034: IPR003749: IPR003448; KEGG: ddr:Deide_20615 molybdenum cofactor biosynthesis protein, small and large subunit; PFAM: Molybdopterin biosynthesis MoaE; ThiamineS; SPTR: molybdenum cofactor biosynthesis protein, small and large subunit; TIGRFAM: Molybdopterin converting factor, subunit 1; PFAM: ThiS family; MoaE protein; TIGRFAM: molybdopterin converting factor, subunit 1, non-archaeal YP_004169398.1 KEGG: dra:DR_B0051 hypothetical protein; SPTR: uncharacterized protein YP_004169399.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160: IPR011620; KEGG: dge:Dgeo_0566 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: 5TMR of 5TMR-LYT; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004169400.1 COGs: COG2203 FOG: GAF domain; InterPro IPR003018; KEGG: dge:Dgeo_2479 diguanylate cyclase with GAF sensor; PFAM: GAF; SMART: GAF; SPTR: Diguanylate cyclase with GAF sensor; PFAM: GAF domain YP_004169401.1 KEGG: ngr:NAEGRDRAFT_48701 hypothetical protein; SPTR: Predicted protein YP_004169402.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: dge:Dgeo_2664 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type sugar transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004169403.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: dge:Dgeo_2663 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type sugar transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004169404.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: dge:Dgeo_2662 extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein YP_004169405.1 COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: dge:Dgeo_2661 glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase family YP_004169406.1 COGs: COG2188 Transcriptional regulators; InterPro IPR000524: IPR011663; KEGG: ddr:Deide_3p00171 transcriptional regulator, GntR; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SPTR: transcriptional regulator, GntR; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain YP_004169407.1 COGs: COG2222 phosphosugar isomerase; InterPro IPR001347; KEGG: ddr:Deide_3p00180 phosphosugar isomerase; PFAM: Sugar isomerase (SIS); SPTR: phosphosugar isomerase; PFAM: SIS domain YP_004169408.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: ddr:Deide_3p00190 fructoselysine kinase; PFAM: Carbohydrate/purine kinase; SPTR: fructoselysine kinase; PFAM: pfkB family carbohydrate kinase YP_004169409.1 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: ddr:Deide_3p00200 amino acid ABC transporter, periplasmic component; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; SPTR: amino acid ABC transporter, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_004169410.1 InterPro IPR001647; KEGG: ami:Amir_3140 transcriptional regulator, TetR family; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: TetR-family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family YP_004169411.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR023210; KEGG: ara:Arad_0567 oxidoreductase; PFAM: NADP-dependent oxidoreductase domain; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase family YP_004169412.1 COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR013120; KEGG: sli:Slin_2467 NmrA family protein; PFAM: Male sterility, NAD-binding; SPTR: NmrA family protein; PFAM: NmrA-like family YP_004169413.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR000014: IPR003018: IPR003661: IPR003594: IPR 013656; KEGG: dge:Dgeo_2179 multi-sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; GAF; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; GAF; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Multi-sensor signal transduction histidine kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004169414.1 COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: dge:Dgeo_0756 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: Protein tyrosine phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase YP_004169415.1 COGs: COG0640 transcriptional regulator protein; InterPro IPR001845; KEGG: dge:Dgeo_2549 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family YP_004169416.1 COGs: COG1275 tellurite resistance protein and related permease; InterPro IPR004695; KEGG: msl:Msil_3232 C4-dicarboxylate transporter/malic acid transport protein; PFAM: C4-dicarboxylate transporter/malic acid transport protein; SPTR: C4-dicarboxylate transporter/malic acid transport protein; PFAM: C4-dicarboxylate transporter/malic acid transport protein; TIGRFAM: C4-dicarboxylate transporter/malic acid transport protein YP_004169417.1 COGs: COG0583 Transcriptional regulator; InterPro IPR000847: IPR005119; KEGG: dge:Dgeo_2840 LysR family transcriptional regulator; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: Transcriptional regulator, LysR family; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family YP_004169418.1 COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104: IPR006103; KEGG: dge:Dgeo_2104 glycoside hydrolase; PFAM: Glycoside hydrolase, family 2, carbohydrate-binding; Glycoside hydrolase, family 2, TIM barrel; PRIAM: Beta-galactosidase; SPTR: Glycoside hydrolase family 2 multidomain protein; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain YP_004169419.1 COGs: COG3685 conserved hypothetical protein; InterPro IPR010287; KEGG: ddr:Deide_13500 hypothetical protein; PFAM: Protein of unknown function DUF892; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF892) YP_004169420.1 KEGG: bur:Bcep18194_A4223 ribonuclease E; SPTR: ribonuclease E YP_004169421.1 COGs: COG4628 conserved hypothetical protein; InterPro IPR018668; KEGG: azo:azo1268 hypothetical protein; PFAM: Protein of unknown function DUF2132; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2132) YP_004169422.1 COGs: COG1182 Acyl carrier protein phosphodiesterase; HAMAP: NADH-azoreductase, FMN-dependent; InterPro IPR023048: IPR003680; KEGG: bmd:BMD_4005 FMN-dependent NADH-azoreductase; PFAM: Flavodoxin-like fold; SPTR: FMN-dependent NADH-azoreductase 4; PFAM: Flavodoxin-like fold YP_004169423.1 KEGG: zro:ZYRO0A07194g hypothetical protein; SPTR: Predicted protein YP_004169424.1 COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR006379: IPR013200; KEGG: dra:DR_0240 hypothetical protein; PFAM: HAD superfamily hydrolase-like, type 3; SPTR: uncharacterized protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB YP_004169425.1 KEGG: hau:Haur_2893 hypothetical protein; SPTR: uncharacterized protein YP_004169426.1 KEGG: hau:Haur_2892 hypothetical protein; SPTR: uncharacterized protein; PFAM: Leucine Rich Repeat YP_004169427.1 KEGG: hau:Haur_1840 radical SAM domain-containing protein; SPTR: Radical SAM domain protein YP_004169428.1 COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR006638: IPR007197: IPR010723; KEGG: tfu:Tfu_0739 coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region YP_004169429.1 InterPro IPR006124; KEGG: mxa:MXAN_2887 hypothetical protein; PFAM: Metalloenzyme; SPTR: uncharacterized protein; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase YP_004169430.1 KEGG: tfu:Tfu_0737 hypothetical protein; SPTR: uncharacterized protein YP_004169431.1 KEGG: hau:Haur_1844 hypothetical protein; SPTR: uncharacterized protein YP_004169432.1 KEGG: scb:SCAB_7861 hypothetical protein; SPTR: uncharacterized protein YP_004169433.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: dge:Dgeo_0566 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004169434.1 InterPro IPR013216; KEGG: dge:Dgeo_2351 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: Methyltransferase domain YP_004169435.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR000160: IPR019734: IPR001633: IPR011717: IPR 001440; KEGG: ddr:Deide_16860 C-di-GMP phosphodiesterase A; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; Tetratricopeptide repeat; SPTR: c-di-GMP phosphodiesterase A; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; Tetratricopeptide repeat; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004169436.1 COGs: COG0492 Thioredoxin reductase; InterPro IPR000595: IPR013027; KEGG: bph:Bphy_4599 cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Cyclic nucleotide-binding domain; PRIAM: Thioredoxin-disulfide reductase; SMART: Cyclic nucleotide-binding domain; SPTR: Cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Cyclic nucleotide-binding domain YP_004169437.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: sro:Sros_5417 alpha/beta fold family hydrolase; PFAM: Alpha/beta hydrolase fold-1; PRIAM: haloacetate dehalogenase; SPTR: Alpha/beta fold family hydrolase; PFAM: alpha/beta hydrolase fold YP_004169438.1 KEGG: dge:Dgeo_1399 hypothetical protein; SPTR: uncharacterized protein YP_004169439.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR000014: IPR000160: IPR003018: IPR001610: IPR 001633: IPR013656; KEGG: azc:AZC_0416 signaling protein; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; GAF; PAS fold-4; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; GAF; PAC motif; SPTR: signaling protein; TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: EAL domain; GAF domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain YP_004169440.1 KEGG: htu:Htur_2120 response regulator receiver protein; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain YP_004169441.1 COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006225: IPR006145; KEGG: dge:Dgeo_2226 pseudouridine synthase, RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family YP_004169442.1 COGs: COG0523 GTPase (G3E family); InterPro IPR011629: IPR003495; KEGG: ddr:Deide_1p00810 cobalamin synthesis CobW; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SPTR: cobalamin synthesis CobW; PFAM: CobW/HypB/UreG, nucleotide-binding domain; Cobalamin synthesis protein cobW C-terminal domain YP_004169443.1 KEGG: avn:Avin_41490 hypothetical protein; SPTR: uncharacterized protein YP_004169444.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR000014: IPR003661: IPR003594: IPR013656; KEGG: ddr:Deide_2p01110 histidine kinase, classic; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; SPTR: histidine kinase, classic; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004169445.1 COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterPro IPR012001: IPR012000: IPR011766; KEGG: noc:Noc_0471 thiamine pyrophosphate protein; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Pyruvate dehydrogenase (cytochrome); SPTR: Pyruvate oxidase; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_004169446.1 COGs: COG4188 dienelactone hydrolase; KEGG: rde:RD1_2059 hypothetical protein; SPTR: uncharacterized protein; PFAM: isoform II YP_004169447.1 KEGG: cyn:Cyan7425_1357 hypothetical protein; SPTR: uncharacterized protein YP_004169448.1 COGs: COG2897 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: dge:Dgeo_2206 thiosulfate sulfurtransferase; PFAM: Rhodanese-like; PRIAM: Thiosulfate sulfurtransferase; SMART: Rhodanese-like; SPTR: Thiosulfate sulfurtransferase; PFAM: Rhodanese-like domain YP_004169449.1 COGs: COG0583 Transcriptional regulator; InterPro IPR000847: IPR005119; KEGG: ddr:Deide_3p01240 transcriptional regulator, LysR family; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain YP_004169450.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160: IPR003018: IPR007891: IPR003660; KEGG: ddr:Deide_18070 diguanylate-cyclase; PFAM: Diguanylate cyclase, predicted; CHASE3; HAMP linker domain; SMART: Diguanylate cyclase, predicted; GAF; SPTR: diguanylate-cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: HAMP domain; GGDEF domain; CHASE3 domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004169451.1 InterPro IPR018060: IPR000005; KEGG: dge:Dgeo_2329 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; SPTR: Transcriptional regulator, AraC family YP_004169452.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: dge:Dgeo_2330 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein YP_004169453.1 InterPro IPR004360; KEGG: rha:RHA1_ro03834 glyoxalase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_004169454.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060: IPR000005; KEGG: rop:ROP_37060 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004169455.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: dge:Dgeo_2519 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme YP_004169456.1 COGs: COG3885 conserved hypothetical protein; InterPro IPR004183; KEGG: aac:Aaci_0840 extradiol ring-cleavage dioxygenase class III protein subunit B; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; SPTR: uncharacterized protein; PFAM: Catalytic LigB subunit of aromatic ring-opening dioxygenase YP_004169457.1 KEGG: shl:Shal_1394 DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase YP_004169458.1 KEGG: bfa:Bfae_23800 50S ribosomal protein L4; SPTR: LSU ribosomal protein L4P YP_004169459.1 COGs: COG5498 glycosyl hydrolase; InterPro IPR003961: IPR006584: IPR005200: IPR005084; KEGG: ddr:Deide_2p00950 glycosyl hydrolase; PFAM: Carbohydrate binding domain, family 6; Glycoside hydrolase, family 81; Fibronectin, type III; PRIAM: Endo-1,3(4)-beta-glucanase; SMART: Cellulose binding, type IV; Fibronectin, type III; SPTR: glycosyl hydrolase; PFAM: Glycosyl hydrolase family 81; Carbohydrate binding module (family 6); Fibronectin type III domain YP_004169460.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR003661: IPR003594: IPR013656; KEGG: dge:Dgeo_0389 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Signal transduction histidine kinase containing PAS domain; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold YP_004169461.1 InterPro IPR001789; KEGG: ddr:Deide_2p01120 response regulator, CheY; response regulator rcp1; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: response regulator, CheY; response regulator rcp1; PFAM: Response regulator receiver domain YP_004169462.1 KEGG: ddr:Deide_23240 hypothetical protein; SPTR: uncharacterized protein YP_004169463.1 KEGG: ank:AnaeK_4053 acriflavin resistance protein; SPTR: Acriflavin resistance protein YP_004169464.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR000014: IPR003661: IPR003594: IPR013767; KEGG: ddr:Deide_02740 histidine kinase, classic; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: histidine kinase, classic; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004169465.1 KEGG: cwo:Cwoe_0554 transcriptional regulator, LuxR family; SPTR: Transcriptional regulator, LuxR family YP_004169466.1 COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR019953: IPR003718; KEGG: cms:CMS_0974 hydroperoxide resistance protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: organic hydroperoxide resistance protein/OsmC-like protein; TIGRFAM: Peroxiredoxin, organic hydroperoxide resistance-related; PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, Ohr subfamily YP_004169467.1 COGs: COG0583 Transcriptional regulator; InterPro IPR000847: IPR005119; KEGG: gob:Gobs_3091 transcriptional regulator, LysR family; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain YP_004169468.1 KEGG: ddr:Deide_1p00500 hypothetical protein; SPTR: uncharacterized protein YP_004169469.1 COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: ddr:Deide_02520 glycoside hydrolase, family 43; PFAM: Glycoside hydrolase, family 43; SPTR: Glycoside hydrolase, family 43; PFAM: Glycosyl hydrolases family 43 YP_004169470.1 KEGG: dsh:Dshi_0256 hypothetical protein YP_004169471.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: ddr:Deide_3p00270 serine protease, subtilase family; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; PRIAM: Subtilisin; SPTR: serine protease, subtilase family; PFAM: Subtilase family YP_004169472.1 InterPro IPR002482: IPR018392: IPR005074; KEGG: mrb:Mrub_3022 NLP/P60 protein; PFAM: Peptidoglycan-binding lysin domain; Peptidase C39, bacteriocin processing; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: NLP/P60 protein; PFAM: Peptidase C39 family; LysM domain YP_004169473.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR000160: IPR003018: IPR001633; KEGG: ddr:Deide_1p00440 diguanylate-cyclase; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; GAF; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; GAF; SPTR: diguanylate-cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004169474.1 COGs: COG1609 Transcriptional regulators; KEGG: vap:Vapar_0131 transcriptional regulator, LacI family; SPTR: Transcriptional regulator, LacI family YP_004169475.1 COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR003856; KEGG: ddr:Deide_20321 tyrosine kinase; PFAM: lipopolysaccharide biosynthesis; SPTR: tyrosine kinase; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family YP_004169476.1 COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: msv:Mesil_2745 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein YP_004169477.1 KEGG: vei:Veis_1666 cation efflux protein; SPTR: uncharacterized protein YP_004169478.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: rxy:Rxyl_0564 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, family 2; PFAM: Glycosyl transferase family 2 YP_004169479.1 COGs: COG1045 Serine acetyltransferase; InterPro IPR001451; KEGG: gsu:GSU1960 hexapeptide transferase; SPTR: Hexapeptide transferase YP_004169480.1 COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR003593: IPR003439; KEGG: hau:Haur_1716 ABC transporter related; PFAM: ABC transporter-like; SPTR: ABC transporter related; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit YP_004169481.1 InterPro IPR022441: IPR006626; KEGG: ddr:Deide_1p01370 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Parallel beta-helix repeat-2; TIGRFAM: parallel beta-helix repeat (two copies) YP_004169482.1 COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR017475: IPR003362; KEGG: dge:Dgeo_2671 undecaprenyl-phosphate galactosephosphotransferase; PFAM: Bacterial sugar transferase; PRIAM: undecaprenyl-phosphate galactose phosphotransferase; SPTR: undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; undecaprenyl-phosphate galactose phosphotransferase, WbaP YP_004169483.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dge:Dgeo_2650 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate decarboxylase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family YP_004169484.1 COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR017476: IPR001732: IPR014026: IPR014027; KEGG: dge:Dgeo_2649 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: UDP-glucose 6-dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_004169485.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sjp:SJA_C1-34740 glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1 YP_004169486.1 COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR006426: IPR000583: IPR001962; KEGG: alv:Alvin_2723 asparagine synthase (glutamine-hydrolyzing); PFAM: Asparagine synthase; Glutamine amidotransferase, class-II; SPTR: Asparagine synthase (Glutamine-hydrolyzing); TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing) YP_004169487.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rop:ROP_57990 glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: glycosyltransferase; PFAM: Glycosyl transferases group 1 YP_004169488.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: npu:Npun_F5504 glycosyl transferase, group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1 YP_004169489.1 InterPro IPR006626; KEGG: ddr:Deide_1p01370 hypothetical protein; SPTR: uncharacterized protein YP_004169490.1 KEGG: dra:DR_0581 hypothetical protein; SPTR: uncharacterized protein YP_004169491.1 KEGG: ddr:Deide_12251 hypothetical protein; SPTR: uncharacterized protein YP_004169492.1 COGs: COG4091 homoserine dehydrogenase; InterPro IPR013974; KEGG: ana:alr2831 hypothetical protein; PFAM: SAF domain; SMART: SAF domain; SPTR: Alr2831 protein; PFAM: homoserine dehydrogenase, NAD binding domain; SAF domain YP_004169493.1 COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: naz:Aazo_3128 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase related protein; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase YP_004169494.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: ana:alr2827 hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Alr2827 protein; PFAM: NAD dependent epimerase/dehydratase family YP_004169495.1 COGs: COG0579 dehydrogenase; InterPro IPR006076; KEGG: ava:Ava_1107 hydroxyglutarate oxidase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase YP_004169496.1 COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR013446: IPR005835; KEGG: acr:Acry_0591 glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate cytidylyltransferase; SPTR: Glucose-1-phosphate cytidylyltransferase; TIGRFAM: Glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate cytidylyltransferase YP_004169497.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR000160: IPR001633: IPR003018; KEGG: ddr:Deide_1p00440 diguanylate-cyclase; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; GAF; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SPTR: diguanylate-cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; GAF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004169498.1 COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: dge:Dgeo_2729 redoxin; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; SPTR: Redoxin; PFAM: AhpC/TSA family YP_004169499.1 COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: asa:ASA_2347 methionine gamma-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PRIAM: Cystathionine gamma-synthase; SPTR: Methionine gamma-lyase; PFAM: Cys/Met metabolism PLP-dependent enzyme YP_004169500.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR000160: IPR001633; KEGG: tra:Trad_2626 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase/phosphodiesterase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004169501.1 InterPro IPR004107: IPR002104; KEGG: dge:Dgeo_2737 phage integrase-like SAM-like; PFAM: Integrase, N-terminal SAM-like, phage; Integrase, catalytic core, phage; SPTR: XerC-like recombinase; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_004169502.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: gym:GYMC10_0461 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase-like TIM barrel YP_004169503.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: rca:Rcas_4405 oxidoreductase domain-containing protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold YP_004169504.1 COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307: IPR011418; KEGG: gyc:GYMC61_2948 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; AP endonuclease, family 2, C-terminal; SPTR: Xylose isomerase domain protein TIM barrel; PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel YP_004169505.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: ppy:PPE_00863 predicted dehydrogenase; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Predicted dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain YP_004169506.1 COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: vap:Vapar_4867 ROK family protein; PFAM: ROK; PRIAM: Glucokinase; SPTR: ROK family protein; PFAM: ROK family YP_004169507.1 KEGG: sma:SAV_935 LuxR family transcriptional regulator; SPTR: AveR protein YP_004169508.1 KEGG: rrs:RoseRS_2292 hypothetical protein; SPTR: uncharacterized protein YP_004169509.1 COGs: COG2977 Phosphopantetheinyl transferase component of siderophore synthetase; KEGG: fre:Franean1_4187 4'-phosphopantetheinyl transferase; SPTR: 4'-phosphopantetheinyl transferase YP_004169510.1 COGs: COG1169 isochorismate synthase; InterPro IPR004561: IPR015890; KEGG: sgr:SGR_6733 isochorismate synthase; PFAM: Chorismate binding, C-terminal; PRIAM: isochorismate synthase; SPTR: isochorismate synthase; TIGRFAM: isochorismate synthase; PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases YP_004169511.1 COGs: COG1021 Peptide arylation protein; InterPro IPR000873; KEGG: avn:Avin_21210 enterobactin synthetase component E (2,3-dihydroxybenzoate-AMP ligase); PFAM: AMP-dependent synthetase/ligase; PRIAM: (2,3-dihydroxybenzoyl)adenylate synthase; SPTR: Enterobactin synthetase component E (2,3-dihydroxybenzoate-AMP ligase); PFAM: AMP-binding enzyme; TIGRFAM: 2,3-dihydroxybenzoate-AMP ligase YP_004169512.1 COGs: COG1535 isochorismate hydrolase; InterPro IPR000868; KEGG: bae:BATR1942_13805 isochorismatase; PFAM: isochorismatase-like; PRIAM: isochorismatase; SPTR: isochorismatase; PFAM: isochorismatase family; Phosphopantetheine attachment site YP_004169513.1 InterPro IPR001242; KEGG: scl:sce3888 nonribosomal peptide synthetase; PFAM: Condensation domain; SPTR: Nonribosomal peptide synthetase; PFAM: Condensation domain YP_004169514.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR020842: IPR002198; KEGG: svi:Svir_20760 dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR; SPTR: uncharacterized protein; PFAM: short chain dehydrogenase YP_004169515.1 COGs: COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006219: IPR006218; KEGG: dge:Dgeo_1821 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: Phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: DHAP synthase, class 1; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase YP_004169516.1 COGs: COG1937 conserved hypothetical protein; InterPro IPR003735; KEGG: mrb:Mrub_2884 hypothetical protein; PFAM: Protein of unknown function DUF156; SPTR: uncharacterized protein; PFAM: Uncharacterised BCR, COG1937 YP_004169517.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001279: IPR001763; KEGG: dra:DR_A0304 hypothetical protein; PFAM: Beta-lactamase-like; Rhodanese-like; SMART: Beta-lactamase-like; Rhodanese-like; SPTR: uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain YP_004169518.1 InterPro IPR002781; KEGG: tfu:Tfu_3084 membrane permease; PFAM: Protein of unknown function DUF81; SPTR: Conserved hypothetical membrane permease; PFAM: Sulfite exporter TauE/SafE YP_004169519.1 COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR004602: IPR003439; KEGG: dra:DR_A0188 excinuclease ABC, subunit A; PFAM: ABC transporter-like; SPTR: Excinuclease ABC, subunit A; TIGRFAM: Excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit YP_004169520.1 COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; HAMAP: Acetate-CoA ligase; InterPro IPR011904: IPR000873; KEGG: dge:Dgeo_1759 acetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Acetate--CoA ligase; SPTR: Acetyl-coenzyme A synthetase; TIGRFAM: Acetate-CoA ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase; acetoacetyl-CoA synthase YP_004169521.1 KEGG: ngr:NAEGRDRAFT_31560 hypothetical protein; SPTR: Predicted protein YP_004169522.1 COGs: COG0262 Dihydrofolate reductase; InterPro IPR002734; KEGG: bcj:BCAL1859 hypothetical protein; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; SPTR: uncharacterized protein; PFAM: RibD C-terminal domain YP_004169523.1 COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: pna:Pnap_2416 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter YP_004169524.1 COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; InterPro IPR000515; KEGG: ppg:PputGB1_0263 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component YP_004169525.1 COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; InterPro IPR010067: IPR001638; KEGG: mpo:Mpop_3602 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; SPTR: Aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulphonates; PFAM: NMT1/THI5 like; TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulfonates family YP_004169526.1 COGs: COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase; InterPro IPR016048; KEGG: ttr:Tter_2225 alkanesulfonate monooxygenase; PFAM: Luciferase-like, subgroup; PRIAM: Alkanesulfonate monooxygenase; SPTR: Alkanesulfonate monooxygenase; PFAM: Luciferase-like monooxygenase; TIGRFAM: alkanesulfonate monooxygenase, FMNH(2)-dependent YP_004169527.1 KEGG: tra:Trad_0148 hypothetical protein; SPTR: uncharacterized protein YP_004169528.1 KEGG: cag:Cagg_2652 MCP methyltransferase, CheR-type with Tpr repeats; SPTR: MCP methyltransferase, CheR-type with Tpr repeats YP_004169529.1 InterPro IPR011541; KEGG: ddr:Deide_2p01650 hypothetical protein; PFAM: Nickel/cobalt transporter, high-affinity; SPTR: uncharacterized protein; PFAM: High-affinity nickel-transport protein YP_004169530.1 COGs: COG2241 Precorrin-6B methylase 1; InterPro IPR012818: IPR000878; KEGG: ddr:Deide_2p01570 cobalt-precorrin-6Y C(5)-methyltransferase; PFAM: Tetrapyrrole methylase; SPTR: precorrin-6B methylase 1; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase, core; PFAM: Tetrapyrrole (Corrin/porphyrin) Methylases; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit YP_004169531.1 COGs: COG2082 Precorrin isomerase; InterPro IPR002762: IPR003722; KEGG: rsl:RPSI07_mp0507 precorrin-8X methylmutase (CobH/CbiC); PFAM: Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase, core; Cobalamin (vitamin B12) biosynthesis CbiX; PRIAM: Sirohydrochlorin ferrochelatase., Precorrin-8X methylmutase; SPTR: precorrin-8X methylmutase (CobH/CbiC); PFAM: Precorrin-8X methylmutase; CbiX YP_004169532.1 COGs: COG1903 Cobalamin biosynthesis protein CbiD; HAMAP: Cobalamin (vitamin B12) biosynthesis CbiD; InterPro IPR002748; KEGG: rso:RSp0622 cobalamin biosynthesis D transmembrane protein; PFAM: Cobalamin (vitamin B12) biosynthesis CbiD; SPTR: cobalt-precorrin-6A synthase [deacetylating] 2; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiD; PFAM: CbiD; TIGRFAM: cobalamin biosynthesis protein CbiD YP_004169533.1 COGs: COG2243 Precorrin-2 methylase; InterPro IPR006364: IPR000878; KEGG: rso:RSp0621 precorrin-2 C20-methyltransferase; PFAM: Tetrapyrrole methylase; SPTR: Precorrin-2 c20-methyltransferase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase, core; PFAM: Tetrapyrrole (Corrin/porphyrin) Methylases; TIGRFAM: precorrin-2 C20-methyltransferase YP_004169534.1 COGs: COG2875 Precorrin-4 methylase; InterPro IPR006362: IPR000878; KEGG: hse:Hsero_2651 precorrin-4 C11-methyltransferase; PFAM: Tetrapyrrole methylase; PRIAM: Precorrin-4 C(11)-methyltransferase; SPTR: Precorrin-4 C11-methyltransferase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase, core; PFAM: Tetrapyrrole (Corrin/porphyrin) Methylases; TIGRFAM: precorrin-4 C11-methyltransferase YP_004169535.1 COGs: COG2073 Cobalamin biosynthesis protein CbiG; InterPro IPR002750; KEGG: ddr:Deide_2p01620 cobalamin biosynthesis protein CbiG; PFAM: Cobalamin (vitamin B12) biosynthesis CbiG, core; SPTR: Cobalamin (Vitamin B12) biosynthesis CbiG protein; PFAM: Cobalamin synthesis G C-terminus; Cobalamin synthesis G N-terminal YP_004169536.1 COGs: COG1010 Precorrin-3B methylase; InterPro IPR006363: IPR003723: IPR000878; KEGG: hse:Hsero_2649 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase; PFAM: Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase; Tetrapyrrole methylase; PRIAM: Precorrin-3B C(17)-methyltransferase., Precorrin-6A reductase; SPTR: Bifunctional: precorrin-3 methyltransferase and precorrin-6x reductase oxidoreductase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobJ/CibH, precorrin-3B C17-methyltransferase, core; Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK; Tetrapyrrole (Corrin/porphyrin) Methylases; TIGRFAM: precorrin-3B C17-methyltransferase; precorrin-6x reductase YP_004169537.1 COGs: COG0523 GTPase (G3E family); InterPro IPR011629: IPR003495; KEGG: rsl:RPSI07_mp0501 cobalamin biosynthesis protein (CobW); PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SPTR: cobalamin biosynthesis protein (CobW); PFAM: CobW/HypB/UreG, nucleotide-binding domain; Cobalamin synthesis protein cobW C-terminal domain YP_004169538.1 COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR011953: IPR003672; KEGG: dge:Dgeo_2352 cobaltochelatase, CobN subunit; PFAM: CobN/magnesium chelatase; PRIAM: Cobaltochelatase; SPTR: Cobaltochelatase, CobN subunit; TIGRFAM: Cobaltochelatase, CobN subunit; PFAM: CobN/Magnesium Chelatase; TIGRFAM: cobaltochelatase, CobN subunit YP_004169539.1 COGs: COG1239 Mg-chelatase subunit ChlI; InterPro IPR003593: IPR002035: IPR011704; KEGG: hse:Hsero_2656 Mg-chelatase subunit ChlI protein; PFAM: ATPase, AAA-5; von Willebrand factor, type A; PRIAM: Magnesium chelatase; SMART: von Willebrand factor, type A; ATPase, AAA+ type, core; SPTR: Mg-chelatase subunit ChlI protein; PFAM: von Willebrand factor type A domain; AAA domain (dynein-related subfamily) YP_004169540.1 KEGG: sma:SAV_1301 hypothetical protein; SPTR: membrane protein YP_004169541.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: dge:Dgeo_2742 hypothetical protein; PFAM: UspA; SPTR: UspA; PFAM: Universal stress protein family YP_004169542.1 COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: ddr:Deide_15800 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; PFAM: IclR helix-turn-helix domain YP_004169543.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR004638: IPR011701; KEGG: dge:Dgeo_1928 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily YP_004169544.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060: IPR000005; KEGG: sro:Sros_9089 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; SPTR: AraC family transcriptional regulator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004169545.1 InterPro IPR011701; KEGG: fre:Franean1_5374 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily YP_004169546.1 COGs: COG2863 Cytochrome c553; InterPro IPR003088; KEGG: dra:DR_2487 cytochrome c4, PFAM: Cytochrome c, class I; SPTR: Cytochrome C4, ; PFAM: Cytochrome c YP_004169547.1 InterPro IPR015029; KEGG: bur:Bcep18194_C6707 hypothetical protein; PFAM: Protein of unknown function DUF1864; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1864) YP_004169548.1 COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR003953; KEGG: sro:Sros_6172 hypothetical protein; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: uncharacterized protein; PFAM: FAD binding domain YP_004169549.1 COGs: COG2368 Aromatic ring hydroxylase; InterPro IPR004925; KEGG: rha:RHA1_ro03853 aromatic ring hydroxylase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase; SPTR: Aromatic ring hydroxylase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase N terminal; 4-hydroxyphenylacetate 3-hydroxylase C terminal YP_004169550.1 COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR005913; KEGG: sco:SCO2733 hypothetical protein; PFAM: dTDP-4-dehydrorhamnose reductase; SPTR: uncharacterized protein SCO2733 YP_004169551.1 KEGG: dra:DR_1067 hypothetical protein; SPTR: uncharacterized protein YP_004169552.1 InterPro IPR000182; KEGG: atu:Atu2231 acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004169553.1 KEGG: hse:Hsero_1321 cytochrome protein; SPTR: uncharacterized protein YP_004169554.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: rru:Rru_A0058 dihydrokaempferol 4-reductase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: dihydroflavonol 4-reductase; PFAM: NAD dependent epimerase/dehydratase family YP_004169555.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593: IPR001140: IPR003439; KEGG: ddr:Deide_00460 ABC transporter, ATP-binding component; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding component; PFAM: ABC transporter transmembrane region; ABC transporter YP_004169556.1 COGs: COG2513 PEP phosphonomutase; KEGG: ddr:Deide_05540 carboxyvinyl-carboxyphosphonate phosphorylmutase; SPTR: carboxyvinyl-carboxyphosphonate phosphorylmutase YP_004169557.1 InterPro IPR001647; KEGG: ddr:Deide_00360 transcriptional regulator, TetR family; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family YP_004169558.1 KEGG: ami:Amir_4523 protein of unknown function DUF306 MetA and HslJ; SPTR: uncharacterized protein YP_004169559.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR000160: IPR019734: IPR001633: IPR001440: IPR 013105; KEGG: ddr:Deide_16860 C-di-GMP phosphodiesterase A; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; Tetratricopeptide repeat; SPTR: c-di-GMP phosphodiesterase A; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004169560.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: dge:Dgeo_2844 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004169561.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660: IPR003661: IPR003594; KEGG: dge:Dgeo_2845 periplasmic sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SPTR: Periplasmic sensor signal transduction histidine kinase; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004169562.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843: IPR001761; KEGG: dge:Dgeo_2697 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family YP_004169563.1 COGs: COG5520 O-Glycosyl hydrolase; InterPro IPR006584: IPR001139: IPR005084; KEGG: pjd:Pjdr2_3554 glycoside hydrolase family 30; PFAM: Carbohydrate binding domain, family 6; Glycoside hydrolase, family 30; PRIAM: Glucan endo-1,6-beta-glucosidase; SMART: Cellulose binding, type IV; SPTR: Glycoside hydrolase family 30; PFAM: Carbohydrate binding module (family 6); O-Glycosyl hydrolase family 30 YP_004169564.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: scl:sce7548 ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: Extracellular solute-binding protein family 5; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_004169565.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: ssm:Spirs_1165 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004169566.1 COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterProIPR010066: IPR003593: IPR000515: IPR003439: IPR 013563; KEGG: hoh:Hoch_1482 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Binding-protein-dependent transport systems inner membrane component; Oligopeptide/dipeptide ABC transporter, C-terminal; PRIAM: Nickel-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; PFAM: ABC transporter; Binding-protein-dependent transport system inner membrane component; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_004169567.1 COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR010066: IPR003593: IPR003439: IPR013563; KEGG: scl:sce4298 ABC-type oligopeptide transport system, ATPase component; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; PRIAM: Nickel-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_004169568.1 COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764: IPR002772; KEGG: cag:Cagg_1689 glycoside hydrolase family 3 domain protein; PFAM: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal; SPTR: Glycoside hydrolase family 3 domain protein; PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain YP_004169569.1 COGs: COG5520 O-Glycosyl hydrolase; InterPro IPR001139; KEGG: pjd:Pjdr2_3554 glycoside hydrolase family 30; PFAM: Glycoside hydrolase, family 30; PRIAM: Glucan endo-1,6-beta-glucosidase; SPTR: Glycoside hydrolase family 30; PFAM: O-Glycosyl hydrolase family 30 YP_004169570.1 COGs: COG4559 ABC-type hemin transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: dge:Dgeo_0126 hemin importer ATP-binding subunit; PFAM: ABC transporter-like; PRIAM: Iron-chelate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Hemin import ATP-binding protein HmuV; PFAM: ABC transporter YP_004169571.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: dge:Dgeo_0125 transport system permease; PFAM: ABC transporter permease; SPTR: ABC-type hemin transport system, permease component, HutC; PFAM: FecCD transport family YP_004169572.1 COGs: COG2375 Siderophore-interacting protein; InterPro IPR013113: IPR007037; KEGG: dra:DR_B0124 iron-chelator utilization protein, PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting; SPTR: Iron-chelator utilization protein, ; PFAM: Siderophore-interacting protein; Protein of unknown function (DUF2470); Siderophore-interacting FAD-binding domain YP_004169573.1 COGs: COG2329 Uncharacterized protein involved in biosynthesis of extracellular polysaccharides; InterPro IPR007138; KEGG: chl:Chy400_2619 antibiotic biosynthesis monooxygenase; PFAM: Antibiotic biosynthesis monooxygenase; SPTR: Antibiotic biosynthesis monooxygenase; PFAM: Antibiotic biosynthesis monooxygenase YP_004169574.1 COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: bse:Bsel_0334 arabinan endo-1,5-alpha-L-arabinosidase; PFAM: Glycoside hydrolase, family 43; PRIAM: Arabinan endo-1,5-alpha-L-arabinosidase; SPTR: Arabinan endo-1,5-alpha-L-arabinosidase; PFAM: Glycosyl hydrolases family 43 YP_004169575.1 KEGG: bph:Bphy_3389 hypothetical protein; SPTR: uncharacterized protein YP_004169576.1 COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154: IPR013149; KEGG: tra:Trad_2887 alcohol dehydrogenase GroES domain protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; PRIAM: L-iditol 2-dehydrogenase; SPTR: Alcohol dehydrogenase GroES domain protein; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_004169577.1 COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: ttr:Tter_2201 arabinan endo-1,5-alpha-L-arabinosidase; PFAM: Glycoside hydrolase, family 43; PRIAM: Arabinan endo-1,5-alpha-L-arabinosidase; SPTR: Arabinan endo-1,5-alpha-L-arabinosidase; PFAM: Glycosyl hydrolases family 43 YP_004169578.1 COGs: COG2160 L-arabinose isomerase; HAMAP: L-arabinose isomerase; InterPro IPR003762; KEGG: tra:Trad_1489 L-arabinose isomerase; PFAM: L-arabinose isomerase; PRIAM: L-arabinose isomerase; SPTR: L-arabinose isomerase; PFAM: L-arabinose isomerase; L-arabinose isomerase C-terminal domain YP_004169579.1 COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: tra:Trad_1488 class II aldolase/adducin family protein; PFAM: Class II aldolase/adducin, N-terminal; PRIAM: L-ribulose-5-phosphate 4-epimerase; SPTR: Class II aldolase/adducin family protein; PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase YP_004169580.1 COGs: COG1069 Ribulose kinase; HAMAP: L-ribulokinase; InterPro IPR005929: IPR018484: IPR018485; KEGG: tra:Trad_0162 L-ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; PRIAM: Ribulokinase; SPTR: Ribulokinase; TIGRFAM: L-ribulokinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: L-ribulokinase YP_004169581.1 COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: ddr:Deide_3p02570 sugar uptake ABC transporter, periplasmic component; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SPTR: sugar uptake ABC transporter, periplasmic component; PFAM: family YP_004169582.1 COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: ddr:Deide_3p02580 sugar uptake ABC transporter, ATP-binding component; monosaccharide-transporting ATPase; PFAM: ABC transporter-like; PRIAM: monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: sugar uptake ABC transporter, ATP-binding component; monosaccharide-transporting ATPase; PFAM: ABC transporter YP_004169583.1 COGs: COG1172 ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: ddr:Deide_3p02590 ribose/xylose/arabinose/galactoside ABC transporter, permease component; PFAM: ABC transporter permease; SPTR: ribose/xylose/arabinose/galactoside ABC transporter, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_004169584.1 COGs: COG1172 ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: ddr:Deide_3p02600 ribose/xylose/arabinose/galactoside ABC transporter; PFAM: ABC transporter permease; SPTR: ribose/xylose/arabinose/galactoside ABC transporter; PFAM: Branched-chain amino acid transport system / permease component YP_004169585.1 COGs: COG3534 Alpha-L-arabinofuranosidase; InterPro IPR010720; KEGG: rca:Rcas_0598 alpha-N-arabinofuranosidase; PFAM: Alpha-L-arabinofuranosidase, C-terminal; SMART: Alpha-L-arabinofuranosidase, C-terminal; SPTR: Alpha-N-arabinofuranosidase; PFAM: Alpha-L-arabinofuranosidase C-terminus YP_004169586.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: sme:SM_b21604 sugar uptake ABC transporter periplasmic solute-binding protein precursor; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: Extracellular solute-binding protein family 1; PFAM: Bacterial extracellular solute-binding protein YP_004169587.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: sme:SM_b21603 sugar uptake ABC transporter permease; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: sugar uptake ABC transporter permease; PFAM: Binding-protein-dependent transport system inner membrane component YP_004169588.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: hel:HELO_2788 ABC-type transport system permease; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type transport system permease; PFAM: Binding-protein-dependent transport system inner membrane component YP_004169589.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843: IPR001761; KEGG: tra:Trad_1487 transcriptional regulator, LacI family; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family YP_004169590.1 COGs: COG1937 conserved hypothetical protein; InterPro IPR003735; KEGG: dge:Dgeo_2555 hypothetical protein; PFAM: Protein of unknown function DUF156; SPTR: uncharacterized protein; PFAM: Uncharacterised BCR, COG1937 YP_004169591.1 COGs: COG2608 Copper chaperone; InterPro IPR006121; KEGG: ddr:Deide_1p01705 hypothetical protein; PFAM: Heavy metal transport/detoxification protein; SPTR: uncharacterized protein; PFAM: Heavy-metal-associated domain YP_004169592.1 COGs: COG2217 Cation transport ATPase; InterProIPR006403: IPR006416: IPR001757: IPR006121: IPR 008250: IPR005834; KEGG: dge:Dgeo_2553 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_004169593.1 KEGG: ddr:Deide_1p01690 hypothetical protein; SPTR: uncharacterized protein YP_004169594.1 KEGG: ebi:EbC_pEb17201930 transcriptional activator YP_004169595.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: dge:Dgeo_0679 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily YP_004169596.1 InterPro IPR011701; KEGG: ddr:Deide_2p01390 major facilitator superfamily; membrane protein; PFAM: Major facilitator superfamily MFS-1; SPTR: major facilitator superfamily; membrane protein; PFAM: Major Facilitator Superfamily YP_004169597.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: dra:DR_A0049 response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator; PFAM: Response regulator receiver domain YP_004169598.1 KEGG: ddr:Deide_2p00651 hypothetical protein; SPTR: uncharacterized protein YP_004169599.1 KEGG: ddr:Deide_2p00660 hypothetical protein; SPTR: uncharacterized protein YP_004169600.1 KEGG: ddr:Deide_2p00670 hypothetical protein; SPTR: uncharacterized protein YP_004169601.1 COGs: COG1162 GTPase; HAMAP: ribosome biogenesis GTPase RsgA, InterPro IPR004881; KEGG: ddr:Deide_03610 GTPase EngC protein 2; PFAM: ribosome biogenesis GTPase RsgA, SPTR: ribosome biogenesis GTPase RsgA; PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A YP_004169602.1 KEGG: dma:DMR_20900 selenide, water dikinase; SPTR: uncharacterized protein YP_004169603.1 COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR003018: IPR003607: IPR006674; KEGG: ddr:Deide_19170 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD subdomain; GAF; SMART: Metal-dependent phosphohydrolase, HD domain; GAF; SPTR: uncharacterized protein; PFAM: HD domain YP_004169604.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160: IPR003018; KEGG: ddr:Deide_2p00540 response regulator, CheY , response regulator PleD; PFAM: Diguanylate cyclase, predicted; GAF; SMART: Diguanylate cyclase, predicted; GAF; SPTR: response regulator, CheY , response regulator pleD; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004169605.1 COGs: COG3126 conserved hypothetical protein; KEGG: ypb:YPTS_1018 lipoprotein; SPTR: lipoprotein-related protein YP_004169606.1 InterPro IPR004843; KEGG: cyj:Cyan7822_5426 alkaline phosphatase; PFAM: Metallo-dependent phosphatase; PRIAM: Alkaline phosphatase; SPTR: Alkaline phosphatase; PFAM: Calcineurin-like phosphoesterase YP_004169607.1 KEGG: ddr:Deide_00800 hypothetical protein; SPTR: uncharacterized protein YP_004169608.1 COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR001264: IPR001460; KEGG: dge:Dgeo_1895 peptidoglycan glycosyltransferase; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; SPTR: Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase YP_004169609.1 InterPro IPR003607: IPR006674; KEGG: ddr:Deide_06730 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: uncharacterized protein; manually curated; PFAM: HD domain YP_004169610.1 KEGG: dge:Dgeo_2628 DNA damage repair protein; SPTR: DNA damage repair protein PprA YP_004169611.1 COGs: COG4759 Uncharacterized protein containing thioredoxin-like domain; InterPro IPR009737; KEGG: dge:Dgeo_2755 sucraseferredoxin-like; PFAM: Sucraseferredoxin-like; SPTR: Sucraseferredoxin-like protein; PFAM: Sucrase/ferredoxin-like YP_004169612.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: dge:Dgeo_2756 transport system permease; PFAM: ABC transporter permease; SPTR: ABC-type Fe3+-siderophore transport system, permease component, FecD; PFAM: FecCD transport family YP_004169613.1 COGs: COG4594 ABC-type Fe3+-citrate transport system periplasmic component; InterPro IPR002491; KEGG: mrb:Mrub_2416 periplasmic binding protein; PFAM: Periplasmic binding protein; SPTR: Periplasmic binding protein; PFAM: Periplasmic binding protein YP_004169614.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: dra:DR_B0122 iron ABC transporter, permease; PFAM: ABC transporter permease; SPTR: Iron ABC transporter, permease; PFAM: FecCD transport family YP_004169615.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593: IPR003439; KEGG: dge:Dgeo_2759 ABC transporter-related protein; PFAM: ABC transporter-like; PRIAM: Iron-chelate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type Fe3+-siderophore transport system, ATPase component; PFAM: ABC transporter YP_004169616.1 KEGG: dge:Dgeo_1798 hypothetical protein; SPTR: Lea76/Lea29-like desiccation resistance protein YP_004169617.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR000014: IPR003018: IPR003661: IPR003594: IPR 013656; KEGG: ddr:Deide_3p00530 histidine kinase, classic; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; PAS fold-4; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; SPTR: histidine kinase, classic; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004169618.1 InterPro IPR001087; KEGG: rmr:Rmar_0133 hypothetical protein; PFAM: lipase, GDSL; SPTR: uncharacterized protein; PFAM: GDSL-like lipase/Acylhydrolase YP_004169619.1 COGs: COG4639 kinase; InterPro IPR006674; KEGG: dra:DR_B0098 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SPTR: uncharacterized protein; PFAM: HD domain YP_004169620.1 KEGG: msv:Mesil_3521 hypothetical protein; SPTR: uncharacterized protein YP_004169621.1 COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: ddr:Deide_3p01210 transcriptional regulator,Rrf2 family; PFAM: Transcription regulator Rrf2; SPTR: transcriptional regulator,Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein ( transcriptional regulator) YP_004169622.1 COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030; KEGG: req:REQ_38490 NmrA family transcriptional regulator; SPTR: uncharacterized protein; PFAM: NmrA-like family YP_004169623.1 COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873; KEGG: dge:Dgeo_1750 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Acetate--CoA ligase; SPTR: AMP-dependent synthetase and ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme YP_004169624.1 COGs: COG2128 conserved hypothetical protein; InterPro IPR010195: IPR004675: IPR003779; KEGG: dge:Dgeo_1446 hypothetical protein; PFAM: Carboxymuconolactone decarboxylase; SPTR: Uncharacterised peroxidase-related; TIGRFAM: Uncharacterised peroxidase-related; Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase AhpD family core domain YP_004169625.1 COGs: COG3798 conserved hypothetical protein; InterPro IPR018684; KEGG: dra:DR_1348 hypothetical protein; PFAM: Protein of unknown function DUF2171; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2171) YP_004169626.1 KEGG: hdn:Hden_1627 hypothetical protein; SPTR: uncharacterized protein YP_004169627.1 KEGG: dge:Dgeo_2843 hypothetical protein; SPTR: uncharacterized protein YP_004169628.1 COGs: COG4558 ABC-type hemin transport system periplasmic component; InterPro IPR002491; KEGG: dge:Dgeo_0124 periplasmic binding protein; PFAM: Periplasmic binding protein; SPTR: ABC-type hemin transport system, periplasmic component; PFAM: Periplasmic binding protein YP_004169629.1 COGs: COG2375 Siderophore-interacting protein; InterPro IPR013113: IPR007037; KEGG: mxa:MXAN_3639 iron-chelator utilization protein; PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting; SPTR: MxcB; PFAM: Siderophore-interacting protein; Siderophore-interacting FAD-binding domain YP_004169630.1 KEGG: lcr:LCRIS_00508 S-layer protein; SPTR: S-layer protein YP_004169631.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013655: IPR013656: IPR013767: IPR003594: IPR 000014: IPR001610; KEGG: ddr:Deide_11970 histidine kinase, classic; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; PAS fold-4; PAS fold; SMART: ATPase-like, ATP-binding domain; PAC motif; PAS; SPTR: histidine kinase, classic; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004169632.1 KEGG: aac:Aaci_0221 transcriptional antiterminator, BglG; SPTR: Transcriptional antiterminator, BglG YP_004169633.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: dge:Dgeo_2528 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain YP_004169634.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR013656: IPR013655: IPR003594: IPR000014: IPR 001610; KEGG: geo:Geob_2208 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; PAS fold-4; SMART: ATPase-like, ATP-binding domain; PAC motif; PAS; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box YP_004169635.1 COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR000120; KEGG: mpo:Mpop_1309 amidase; PFAM: Amidase; SPTR: Amidase; PFAM: Amidase YP_004169636.1 COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR001360: IPR005913; KEGG: ddr:Deide_2p00360 bifunctional protein: glycosyl hydrolase family 1; dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; Glycoside hydrolase, family 1; SPTR: bifunctional protein: glycosyl hydrolase family 1; dTDP-4-dehydrorhamnose reductase; PFAM: RmlD substrate binding domain; Glycosyl hydrolase family 1; TIGRFAM: dTDP-4-dehydrorhamnose reductase YP_004169637.1 COGs: COG3544 conserved hypothetical protein; InterPro IPR005183; KEGG: dge:Dgeo_0086 hypothetical protein; PFAM: Domain of unknown function DUF305; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF305) YP_004169638.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: dge:Dgeo_0087 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004169639.1 COGs: COG5002 Signal transduction histidine kinase; InterPro IPR003660: IPR003661: IPR003594; KEGG: dge:Dgeo_0088 periplasmic sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SPTR: Periplasmic sensor signal transduction histidine kinase containing HAMP domain; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004169640.1 KEGG: ddr:Deide_15620 hypothetical protein; SPTR: uncharacterized protein YP_004169641.1 KEGG: dra:DR_2182 hypothetical protein; SPTR: uncharacterized protein YP_004169642.1 COGs: COG2229 GTPase; InterPro IPR004130; KEGG: dra:DR_2181 hypothetical protein; PFAM: Uncharacterised protein family, ATP binding; SPTR: uncharacterized protein; PFAM: Conserved hypothetical ATP binding protein; TIGRFAM: small GTP-binding protein domain YP_004169643.1 COGs: COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid; InterPro IPR004942; KEGG: dra:DR_2180 hypothetical protein; PFAM: Dynein light chain-related; SMART: Dynein light chain-related; SPTR: uncharacterized protein; PFAM: Roadblock/LC7 domain YP_004169644.1 KEGG: dra:DR_2179 hypothetical protein; SPTR: uncharacterized protein YP_004169645.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR003018: IPR001867; KEGG: dge:Dgeo_2479 diguanylate cyclase with GAF sensor; PFAM: GAF; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal; GAF; SPTR: Diguanylate cyclase with GAF sensor; PFAM: GAF domain; Transcriptional regulatory protein, C terminal YP_004169646.1 InterPro IPR000073; KEGG: ddr:Deide_2p00930 hydrolase, prolyl aminopeptidase (proline aminopeptidase.); PFAM: Alpha/beta hydrolase fold-1; SPTR: hydrolase, prolyl aminopeptidase (Proline aminopeptidase.); PFAM: alpha/beta hydrolase fold YP_004169647.1 InterPro IPR000835; KEGG: ddr:Deide_17390 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: transcriptional regulator, MarR family; PFAM: MarR family YP_004169648.1 COGs: COG2259 membrane protein; InterPro IPR011637; KEGG: ddr:Deide_17380 hypothetical protein; PFAM: Uncharacterised protein family YphA; SPTR: uncharacterized protein; PFAM: DoxX YP_004169649.1 COGs: COG2514 ring-cleavage extradiol dioxygenase; InterPro IPR004360; KEGG: ddr:Deide_17370 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_004169650.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149: IPR020843; KEGG: rca:Rcas_2075 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SMART: Polyketide synthase, enoylreductase; SPTR: Alcohol dehydrogenase zinc-binding domain protein; manually curated; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_004169651.1 COGs: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; InterPro IPR006115; KEGG: reu:Reut_B5532 NADP oxidoreductase, coenzyme F420-dependent:6-phosphogluconate dehydrogenase, NAD-binding; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; SPTR: NADP oxidoreductase; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase YP_004169652.1 COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: dge:Dgeo_0867 cation diffusion facilitator family transporter; PFAM: Cation efflux protein; SPTR: Cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter YP_004169653.1 InterPro IPR000073; KEGG: dge:Dgeo_0565 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold YP_004169654.1 COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: dra:DR_A0059 hypothetical protein; PFAM: Transcription regulator PadR N-terminal-like; SPTR: uncharacterized protein; PFAM: Transcriptional regulator PadR-like family YP_004169655.1 COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: dra:DR_A0248 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; PFAM: MarR family YP_004169656.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701: IPR004638; KEGG: msv:Mesil_2812 drug resistance transporter, EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1; SPTR: Drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily YP_004169657.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: dge:Dgeo_1370 periplasmic binding protein; PFAM: Periplasmic binding protein; SPTR: ABC-type Fe3+-siderophore transport system, periplasmic component; PFAM: Periplasmic binding protein YP_004169658.1 InterPro IPR008826; KEGG: rxy:Rxyl_0336 selenium-binding protein; PFAM: Selenium-binding protein; SPTR: Selenium-binding protein; PFAM: 56kDa selenium binding protein (SBP56) YP_004169659.1 KEGG: rxy:Rxyl_0337 hypothetical protein; SPTR: uncharacterized protein YP_004169660.1 COGs: COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing protein; KEGG: nml:Namu_4469 fibronectin type III domain protein; SPTR: Regulator of chromosome condensation RCC1 YP_004169661.1 COGs: COG1806 conserved hypothetical protein; HAMAP: Protein of unknown function DUF299, phosphotransferase, predicted; InterPro IPR005177; KEGG: sal:Sala_2842 hypothetical protein; PFAM: Protein of unknown function DUF299, phosphotransferase, predicted; SPTR: phosphotransferase Sala_2842; PFAM: Domain of unknown function (DUF299) YP_004169662.1 COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR002192: IPR008279: IPR000121: IPR010121; KEGG: chy:CHY_0443 pyruvate phosphate dikinase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme; PRIAM: Pyruvate, phosphate dikinase; SPTR: Pyruvate, phosphate dikinase; TIGRFAM: Pyruvate, phosphate dikinase; PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyruvate, phosphate dikinase YP_004169663.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: npu:Npun_F5032 oxidoreductase domain-containing protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; PRIAM: Glucose-fructose oxidoreductase; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain YP_004169664.1 COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterProIPR003018: IPR013767: IPR013656: IPR006674: IPR 000014: IPR001610: IPR003607; KEGG: ddr:Deide_3p02660 GAF/PAS/PAC domains-containing metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; PAS fold-4; GAF; PAS fold; SMART: PAS; GAF; PAC motif; Metal-dependent phosphohydrolase, HD domain; SPTR: GAF/PAS/PAC domains-containing metal dependent phosphohydrolase; TIGRFAM: PAS; PFAM: HD domain; GAF domain; PAS fold; TIGRFAM: PAS domain S-box YP_004169665.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR003018: IPR000160; KEGG: dge:Dgeo_2479 diguanylate cyclase with GAF sensor; PFAM: GAF; Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; GAF; SPTR: Diguanylate cyclase with GAF sensor; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004169666.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: sno:Snov_3175 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein YP_004169667.1 InterPro IPR000835; KEGG: amd:AMED_6778 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: MarR family transcriptional regulator; PFAM: MarR family YP_004169668.1 COGs: COG1230 Co/Zn/Cd efflux system component; InterPro IPR002524; KEGG: met:M446_3953 cation diffusion facilitator family transporter; PFAM: Cation efflux protein; SPTR: Cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter YP_004169669.1 KEGG: ddr:Deide_01433 hypothetical protein; SPTR: uncharacterized protein YP_004169670.1 COGs: COG3231 Aminoglycoside phosphotransferase; InterPro IPR002575; KEGG: dra:DR_0066 aminoglycoside 3'-phosphotransferase; PFAM: Aminoglycoside phosphotransferase; SPTR: Aminoglycoside 3`-phosphotransferase; PFAM: Phosphotransferase enzyme family YP_004169671.1 InterPro IPR001647; KEGG: mca:MCA2256 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family YP_004169672.1 COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR002938; KEGG: sus:Acid_6736 monooxygenase, FAD-binding; PFAM: monooxygenase, FAD-binding; PRIAM: Pentachlorophenol monooxygenase; SPTR: monooxygenase, FAD-binding; PFAM: FAD binding domain YP_004169673.1 KEGG: hoh:Hoch_4779 quinone oxidoreductase, YhdH/YhfP family; SPTR: uncharacterized protein YP_004169674.1 COGs: COG1511 membrane protein; InterPro IPR013525: IPR017500: IPR017501; KEGG: dge:Dgeo_2467 hypothetical protein; PFAM: ABC-2 type transporter; SPTR: uncharacterized protein; TIGRFAM: Phage infection protein, YhgE, C-terminal; Phage infection protein, YhgE, N-terminal; TIGRFAM: X-X-X-Leu-X-X-Gly heptad repeats; YhgE/Pip C-terminal domain; YhgE/Pip N-terminal domain YP_004169675.1 InterPro IPR001647; KEGG: dge:Dgeo_2468 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family YP_004169676.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: ddr:Deide_04390 hypothetical protein; PFAM: Beta-lactamase-related; SPTR: uncharacterized protein; PFAM: Beta-lactamase YP_004169677.1 KEGG: dra:DR_B0100 hypothetical protein; SPTR: Predicted protein; PFAM: RNA ligase YP_004169678.1 COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013655: IPR013656: IPR013767: IPR003661: IPR 003594: IPR000014: IPR001610; KEGG: ddr:Deide_3p00030 histidine kinase, classic; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; PAS fold-4; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; PAS; PAC motif; SPTR: histidine kinase, classic; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004169679.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR001789: IPR003018: IPR000160; KEGG: afw:Anae109_2240 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain; GAF; PRIAM: Diguanylate kinase; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain; SPTR: Diguanylate cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: Domain of unknown function (DUF3369); GGDEF domain; Response regulator receiver domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004169680.1 COGs: COG4124 Beta-mannanase; InterPro IPR022790; KEGG: ddr:Deide_05311 endoglucanase, precursor; PFAM: Endoglucanase H/Glycosyl hydrolase family 26; SPTR: endoglucanase,; PFAM: Glycosyl hydrolase family 26 YP_004169681.1 COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: ddr:Deide_05310 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: glycosyltransferase; PFAM: Glycosyl transferase family 2 YP_004169682.1 InterPro IPR000757; KEGG: ddr:Deide_1p00130 licheninase (1,3-1,4-beta-D-glucan 4-glucanohydrolase); PFAM: Glycoside hydrolase, family 16; SPTR: licheninase (1,3-1,4-beta-D-glucan 4-glucanohydrolase); PFAM: Glycosyl hydrolases family 16 YP_004169683.1 COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: ddr:Deide_1p01810 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: polysaccharide deacetylase; PFAM: Polysaccharide deacetylase YP_004169684.1 COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR000757: IPR007280; KEGG: ddr:Deide_1p00130 licheninase (1,3-1,4-beta-D-glucan 4-glucanohydrolase); PFAM: Glycoside hydrolase, family 16; Peptidase, C-terminal, archaeal/bacterial; SPTR: licheninase (1,3-1,4-beta-D-glucan 4-glucanohydrolase); PFAM: Glycosyl hydrolases family 16 YP_004169685.1 KEGG: ddr:Deide_1p00131 hypothetical protein; SPTR: uncharacterized protein YP_004169686.1 COGs: COG5534 Plasmid replication initiator protein; InterPro IPR018777; KEGG: msv:Mesil_3348 cupin 2 conserved barrel domain protein; PFAM: Replication initiator protein A; SPTR: Cupin 2 conserved barrel domain protein; PFAM: Replication initiator protein A YP_004169687.1 KEGG: hau:Haur_1498 hypothetical protein; SPTR: uncharacterized protein YP_004169688.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: lbf:LBF_3069 nucleoside-diphosphate-sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Dihydrokaempferol 4-reductase; PFAM: NAD dependent epimerase/dehydratase family YP_004169689.1 COGs: COG1476 transcriptional regulator protein; InterPro IPR001387; KEGG: kra:Krad_4290 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix YP_004169690.1 KEGG: dra:DR_2205 hypothetical protein; SPTR: uncharacterized protein YP_004169691.1 KEGG: slt:Slit_1512 DNA polymerase III, epsilon subunit; SPTR: DNA polymerase III, epsilon subunit YP_004169692.1 COGs: COG3644 conserved hypothetical protein; InterPro IPR018715; KEGG: acp:A2cp1_2169 hypothetical protein; PFAM: Protein of unknown function DUF2239; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2239) YP_004169693.1 COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR003660: IPR003661: IPR003594; KEGG: tbi:Tbis_3275 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SPTR: histidine kinase; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004169694.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: sen:SACE_6095 two-component system, response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Two-component system, response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004169695.1 COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: pap:PSPA7_0523 hypothetical protein; PFAM: lipid/polyisoprenoid-binding, YceI-like; SMART: lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein; PFAM: YceI-like domain YP_004169696.1 KEGG: bch:Bcen2424_6394 D-amino-acid dehydrogenase; SPTR: Glycine/D-amino acid oxidase YP_004169697.1 COGs: COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase; InterPro IPR016048; KEGG: ddr:Deide_3p00350 alkanesulfonate monooxygenase; PFAM: Luciferase-like, subgroup; PRIAM: Alkanesulfonate monooxygenase; SPTR: alkanesulfonate monooxygenase; PFAM: Luciferase-like monooxygenase YP_004169698.1 COGs: COG3919 ATP-grasp protein; KEGG: ddr:Deide_3p00360 ATP-grasp enzyme-like protein; SPTR: ATP-grasp enzyme-like protein YP_004169699.1 COGs: COG1794 Aspartate racemase; InterPro IPR015942: IPR004380; KEGG: ddr:Deide_3p00370 aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; SPTR: aspartate racemase; TIGRFAM: Aspartate racemase; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: aspartate racemase YP_004169700.1 COGs: COG2515 1-aminocyclopropane-1-carboxylate deaminase; InterPro IPR001926: IPR005966; KEGG: ddr:Deide_3p00380 D-cysteine desulfhydrase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: 1-aminocyclopropane-1-carboxylate deaminase; SPTR: D-cysteine desulfhydrase; TIGRFAM: Pyridoxal phosphate-dependent deaminase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family YP_004169701.1 COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544: IPR005786; KEGG: dge:Dgeo_2743 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV; PRIAM: Branched-chain-amino-acid transaminase; SPTR: Branched-chain-amino-acid aminotransferase; TIGRFAM: Branched-chain amino acid aminotransferase II; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II YP_004169702.1 COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; InterPro IPR004165: IPR012791; KEGG: dra:DR_A0067 CoA transferase, subunit B; PFAM: Coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SMART: Coenzyme A transferase; SPTR: CoA transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit YP_004169703.1 COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165: IPR012792; KEGG: bxe:Bxe_A1366 3-oxoacid CoA-transferase; PFAM: Coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SMART: Coenzyme A transferase; SPTR: 3-oxoacid CoA-transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit YP_004169704.1 COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR001753: IPR006176: IPR006108; KEGG: ddr:Deide_09650 peroxisomal bifunction; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; PRIAM: 3-hydroxybutyryl-CoA epimerase; SPTR: Peroxisomal bifunction; PFAM: enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YP_004169705.1 InterPro IPR001647; KEGG: cai:Caci_3279 transcriptional regulator, TetR family; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family YP_004169706.1 KEGG: tth:TTC1472 hypothetical protein; SPTR: uncharacterized protein YP_004169707.1 KEGG: tth:TTC1472 hypothetical protein; SPTR: uncharacterized protein YP_004169708.1 KEGG: mau:Micau_5205 hypothetical protein; SPTR: uncharacterized protein YP_004169709.1 KEGG: gau:GAU_0582 hypothetical protein; SPTR: uncharacterized protein YP_004169710.1 KEGG: cyj:Cyan7822_6796 Na-Ca exchanger/integrin-beta4; SPTR: Na-Ca exchanger/integrin-beta4 YP_004169711.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: cwo:Cwoe_1018 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; PFAM: Beta-lactamase YP_004169712.1 KEGG: rso:RS05070 hemagglutinin/hemolysin-related protein; SPTR: hemagglutinin/hemolysin-related protein YP_004169713.1 KEGG: afr:AFE_2106 ABC transporter, permease, SPTR: membrane protein YP_004169714.1 KEGG: vap:Vapar_1652 hypothetical protein; SPTR: uncharacterized protein YP_004169715.1 COGs: COG2129 phosphoesterase related to the Icc protein; InterPro IPR004843; KEGG: vap:Vapar_1653 metallophosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_004169716.1 KEGG: bcv:Bcav_1862 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; SPTR: uncharacterized protein YP_004169717.1 COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: syn:slr5105 plasmid partitioning protein; SPTR: Plasmid partitioning protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004169718.1 COGs: COG3973 Superfamily I DNA and RNA helicase; KEGG: ddr:Deide_17480 UvrD/rep helicase; SPTR: uvrD/rep helicase; PFAM: UvrD/REP helicase YP_004169719.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR000160: IPR001633: IPR019734; KEGG: ddr:Deide_21850 diguanylate-cyclase; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; Tetratricopeptide repeat; SPTR: diguanylate-cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004169720.1 InterPro IPR000209; KEGG: ddr:Deide_03800 peptidase-S8, subtilase family; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase-S8, Subtilase family; PFAM: Subtilase family YP_004169721.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR023210; KEGG: sma:SAV_6780 oxidoreductase; PFAM: NADP-dependent oxidoreductase domain; SPTR: Oxidoreductase; PFAM: Aldo/keto reductase family YP_004169722.1 KEGG: ddr:Deide_1p01080 hypothetical protein; SPTR: uncharacterized protein YP_004169723.1 InterPro IPR003018; KEGG: ddr:Deide_1p01751 diguanylate cyclase (GGDEF domain) with GAF sensor; PFAM: GAF; SMART: GAF; SPTR: Diguanylate cyclase (GGDEF domain) with GAF sensor; PFAM: GAF domain YP_004169724.1 KEGG: rop:ROP_23260 ABC transporter substrate-binding protein; SPTR: ABC transporter substrate-binding protein YP_004169725.1 COGs: COG0789 transcriptional regulator protein; InterPro IPR000551: IPR015358: IPR012925; KEGG: mxa:MXAN_5120 transcriptional activator TipA; PFAM: TipAS antibiotic-recognition; HTH transcriptional regulator, MerR; Transcription regulator MerR, DNA binding; SMART: HTH transcriptional regulator, MerR; SPTR: Transcriptional activator TipA; PFAM: MerR, DNA binding; MerR family regulatory protein; TipAS antibiotic-recognition domain YP_004169726.1 KEGG: ttu:TERTU_2378 modular polyketide synthase, type I PKS; SPTR: Modular polyketide synthase, type I PKS YP_004169727.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dra:DR_2549 epoxide hydrolase-related protein; PFAM: Alpha/beta hydrolase fold-1; PRIAM: Soluble epoxide hydrolase; SPTR: Epoxide hydrolase-related protein; PFAM: alpha/beta hydrolase fold YP_004169728.1 COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496: IPR022369; KEGG: rce:RC1_3370 integral membrane protein TerC family; PFAM: Integral membrane protein TerC; SPTR: uncharacterized protein; TIGRFAM: Integral membrane protein TerC, riboswitch-linked; PFAM: Integral membrane protein TerC family; TIGRFAM: integral membrane protein, TerC family YP_004169729.1 KEGG: ddr:Deide_12251 hypothetical protein; SPTR: uncharacterized protein YP_004169730.1 COGs: COG0550 Topoisomerase IA; InterProIPR006171: IPR013497: IPR005733: IPR003601: IPR 003602; KEGG: dge:Dgeo_2001 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial-type; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial YP_004169731.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545: IPR001650: IPR014001; KEGG: ddr:Deide_03720 ATP-dependent RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: ATP-dependent RNA helicase; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_004169732.1 InterPro IPR006016; KEGG: mrb:Mrub_2895 UspA domain-containing protein; PFAM: UspA; SPTR: UspA domain protein; PFAM: Universal stress protein family YP_004169733.1 COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR002938; KEGG: hau:Haur_2339 monooxygenase FAD-binding; PFAM: monooxygenase, FAD-binding; SPTR: uncharacterized protein; PFAM: FAD binding domain YP_004169734.1 COGs: COG3629 DNA-binding transcriptional activator of the SARP family; InterPro IPR005158; KEGG: mrb:Mrub_2896 response regulator receiver and SARP domain-containing protein; PFAM: Bacterial transcriptional activator domain; SPTR: Response regulator receiver and SARP domain protein; PFAM: Bacterial transcriptional activator domain YP_004169735.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR013656: IPR003018: IPR003661: IPR003594: IPR 000014: IPR001610; KEGG: ddr:Deide_21610 histidine kinase, classic; PFAM: ATPase-like, ATP-binding domain; GAF; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; GAF; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: histidine kinase, classic; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004169736.1 KEGG: cfl:Cfla_3059 hypothetical protein; SPTR: uncharacterized protein YP_004169737.1 COGs: COG3853 Uncharacterized protein involved in tellurite resistance; InterPro IPR008863; KEGG: mca:MCA1633 hypothetical protein; PFAM: Toxic anion resistance; SPTR: uncharacterized protein; PFAM: Toxic anion resistance protein (TelA) YP_004169738.1 InterPro IPR002035; KEGG: alv:Alvin_0858 stress protein; SMART: von Willebrand factor, type A; SPTR: tellurium resistance protein YP_004169739.1 COGs: COG2310 Uncharacterized protein involved in stress response homologs of TerZ and cAMP-binding protein CABP1; InterPro IPR003325; KEGG: prw:PsycPRwf_0075 stress protein; PFAM: Bacterial stress protein; SPTR: Stress protein; PFAM: Bacterial stress protein YP_004169740.1 COGs: COG3940 beta-xylosidase; InterPro IPR006710; KEGG: sco:SCO7577 secreted hydrolase; PFAM: Glycoside hydrolase, family 43; SPTR: Secreted hydrolase; PFAM: Glycosyl hydrolases family 43 YP_004169741.1 COGs: COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase; InterPro IPR000262; KEGG: rmr:Rmar_1466 lactate 2-monooxygenase; PFAM: FMN-dependent dehydrogenase; PRIAM: Lactate 2-monooxygenase; SPTR: FMN-dependent alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent dehydrogenase YP_004169742.1 COGs: COG2318 conserved hypothetical protein; InterPro IPR007837; KEGG: dge:Dgeo_0076 DinB; PFAM: DinB; SPTR: Yfit/DinB family protein; PFAM: DinB family YP_004169743.1 COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034: IPR014036; KEGG: ddr:Deide_3p02622 transcriptional regulator, DeoR family; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: transcriptional regulator, DeoR family; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain YP_004169744.1 COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: ddr:Deide_3p02570 sugar uptake ABC transporter, periplasmic component; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SPTR: sugar uptake ABC transporter, periplasmic component; PFAM: family YP_004169745.1 COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: ddr:Deide_3p02580 sugar uptake ABC transporter, ATP-binding component; monosaccharide-transporting ATPase; PFAM: ABC transporter-like; PRIAM: monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: sugar uptake ABC transporter, ATP-binding component; monosaccharide-transporting ATPase; PFAM: ABC transporter YP_004169746.1 COGs: COG1172 ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: ddr:Deide_3p02590 ribose/xylose/arabinose/galactoside ABC transporter, permease component; PFAM: ABC transporter permease; SPTR: ribose/xylose/arabinose/galactoside ABC transporter, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_004169747.1 COGs: COG1172 ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: ddr:Deide_3p02600 ribose/xylose/arabinose/galactoside ABC transporter; PFAM: ABC transporter permease; SPTR: ribose/xylose/arabinose/galactoside ABC transporter; PFAM: Branched-chain amino acid transport system / permease component YP_004169748.1 InterPro IPR008775; KEGG: ddr:Deide_23170 phytanoyl-CoA dioxygenase; PFAM: phytanoyl-CoA dioxygenase; SPTR: phytanoyl-CoA dioxygenase; PFAM: phytanoyl-CoA dioxygenase (PhyH) YP_004169749.1 KEGG: scl:sce0051 hypothetical protein YP_004169750.1 KEGG: ddr:Deide_2p02250 hypothetical protein; SPTR: uncharacterized protein YP_004169751.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789: IPR000792; KEGG: cag:Cagg_2804 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004169752.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712: IPR003594; KEGG: mrb:Mrub_1070 histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SPTR: histidine kinase; PFAM: histidine kinase YP_004169753.1 KEGG: dge:Dgeo_1165 hypothetical protein; SPTR: uncharacterized protein YP_004169754.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR003661: IPR003594: IPR001789: IPR003018; KEGG: dge:Dgeo_2096 multi-sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; GAF; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Multi-sensor signal transduction histidine kinase containing PAS and REC domains; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_004169755.1 InterPro IPR003018; KEGG: dge:Dgeo_2479 diguanylate cyclase with GAF sensor; PFAM: GAF; SMART: GAF; SPTR: Diguanylate cyclase with GAF sensor; PFAM: GAF domain YP_004169756.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701: IPR004638; KEGG: art:Arth_0161 EmrB/QacA family drug resistance transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily YP_004169757.1 KEGG: cgr:CAGL0L10626g hypothetical protein; SPTR: Strain CBS138 chromosome L complete sequence YP_004169758.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: bur:Bcep18194_C6898 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: o-succinylbenzoate--CoA ligase; SPTR: AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme YP_004169759.1 COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: mav:MAV_5221 NAD dependent epimerase/dehydratase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: uncharacterized protein; PFAM: short chain dehydrogenase YP_004169760.1 KEGG: sma:SAV_3643 non-ribosomal peptide synthetase; SPTR: Non-ribosimal peptide synthetase YP_004169761.1 KEGG: lbc:LACBIDRAFT_301241 hypothetical protein; SPTR: uncharacterized protein YP_004169762.1 InterPro IPR000182; KEGG: sno:Snov_2494 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004169763.1 InterPro IPR001387; KEGG: bbt:BBta_4478 transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: transcriptional regulatory protein with HTH domain; PFAM: Cupin domain; Helix-turn-helix YP_004169764.1 COGs: COG2132 multicopper oxidase; InterPro IPR011707: IPR011706: IPR000923; KEGG: ddr:Deide_13390 multicopper oxidase, precursor; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; Blue (type 1) copper domain; SPTR: Multicopper oxidase,; PFAM: Multicopper oxidase; Copper binding proteins, plastocyanin/azurin family; TIGRFAM: nitrite reductase, copper-containing YP_004169765.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789: IPR000792; KEGG: smd:Smed_4344 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004169766.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712: IPR003594; KEGG: rlg:Rleg_1496 signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; SPTR: signal transduction histidine kinase; PFAM: histidine kinase; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004169767.1 KEGG: fre:Franean1_4075 hypothetical protein; SPTR: uncharacterized protein; PFAM: Copper binding proteins, plastocyanin/azurin family YP_004169768.1 KEGG: gob:Gobs_4960 hypothetical protein; SPTR: uncharacterized protein YP_004169769.1 COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; InterPro IPR001279; KEGG: dge:Dgeo_1607 ribonuclease Z; PFAM: Beta-lactamase-like; SPTR: ribonuclease Z YP_004169770.1 COGs: COG2873 O-acetylhomoserine sulfhydrylase; InterPro IPR000277; KEGG: dge:Dgeo_0225 O-acetylhomoserine aminocarboxypropyltransferase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PRIAM: Cysteine synthase; SPTR: O-acetylhomoserine aminocarboxypropyltransferase; PFAM: Cys/Met metabolism PLP-dependent enzyme YP_004169771.1 COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: ddr:Deide_21630 hypothetical protein; PFAM: SNARE associated Golgi protein; SPTR: uncharacterized protein; PFAM: SNARE associated Golgi protein YP_004169772.1 COGs: COG3652 outer membrane protein; KEGG: dra:DR_1385 hypothetical protein; SPTR: uncharacterized protein YP_004169773.1 COGs: COG0007 Uroporphyrinogen-III methylase; InterPro IPR000878: IPR003754: IPR006366; KEGG: dge:Dgeo_2131 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase; Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; PRIAM: Uroporphyrinogen-III C-methyltransferase., Uroporphyrinogen-III synthase; SPTR: Uroporphyrin-III methyltransferase and synthase domains; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; PFAM: Tetrapyrrole (Corrin/porphyrin) Methylases; Uroporphyrinogen-III synthase HemD; TIGRFAM: uroporphyrin-III C-methyltransferase YP_004169774.1 COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: dge:Dgeo_2723 glycoside hydrolase; PFAM: Glycoside hydrolase, family 43; SPTR: Glycoside hydrolase, family 43; PFAM: Glycosyl hydrolases family 43 YP_004169775.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: dge:Dgeo_2724 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type sugar transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004169776.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: ddr:Deide_02540 sugar ABC transporter, permease component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: sugar ABC transporter, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004169777.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: ddr:Deide_02550 sugar ABC transporter, periplasmic component; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: sugar ABC transporter, periplasmic component; PFAM: Bacterial extracellular solute-binding protein YP_004169778.1 COGs: COG3940 beta-xylosidase; InterPro IPR006710; KEGG: ote:Oter_3903 glycoside hydrolase; PFAM: Glycoside hydrolase, family 43; SPTR: Glycoside hydrolase family 43; PFAM: Glycosyl hydrolases family 43 YP_004169779.1 COGs: COG1576 conserved hypothetical protein; HAMAP: SPOUT methyltransferase, predicted; InterPro IPR003742; KEGG: dge:Dgeo_1641 hypothetical protein; PFAM: SPOUT methyltransferase, predicted; SPTR: ribosomal RNA large subunit methyltransferase H; PFAM: Predicted SPOUT methyltransferase; TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH YP_004169780.1 InterPro IPR000182; KEGG: dra:DR_0125 acetyltransferase, PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Acetyltransferase, ; PFAM: FR47-like protein YP_004169781.1 COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; KEGG: ddr:Deide_02110 hypothetical protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding; SPTR: uncharacterized protein; PFAM: Flavin reductase like domain YP_004169782.1 COGs: COG1469 conserved hypothetical protein; InterPro IPR003801; KEGG: mrb:Mrub_2312 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase FolE2/MptA; PRIAM: GTP cyclohydrolase I; SPTR: GTP cyclohydrolase folE2; PFAM: Uncharacterized ACR, COG1469 YP_004169783.1 COGs: COG0104 Adenylosuccinate synthase; HAMAP: Adenylosuccinate synthetase; InterPro IPR001114; KEGG: dge:Dgeo_0205 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; SMART: Adenylosuccinate synthetase; SPTR: Adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase YP_004169784.1 InterPro IPR004167; KEGG: ddr:Deide_00370 hypothetical protein; PFAM: E3 binding; SPTR: uncharacterized protein; PFAM: e3 binding domain YP_004169785.1 COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097: IPR006096; KEGG: dra:DR_0158 branched-chain amino acid dehydrogenase; PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; PRIAM: Leucine dehydrogenase; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; SPTR: Branched-chain amino acid dehydrogenase; PFAM: Glutamate/Leucine/phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YP_004169786.1 COGs: COG0572 Uridine kinase; HAMAP: Uridine kinase; InterPro IPR006083: IPR000764; KEGG: dge:Dgeo_0202 uridine kinase; PFAM: Phosphoribulokinase/uridine kinase; PRIAM: Uridine kinase; SPTR: Uridine kinase; TIGRFAM: Uridine kinase; PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase YP_004169787.1 KEGG: dge:Dgeo_0201 hypothetical protein; SPTR: uncharacterized protein YP_004169788.1 COGs: COG2327 conserved hypothetical protein; InterPro IPR007345: IPR019896; KEGG: dge:Dgeo_0200 polysaccharide pyruvyl transferase; PFAM: Polysaccharide pyruvyl transferase; SPTR: Polysaccharide pyruvyl transferase; TIGRFAM: Polysaccharide pyruvyl transferase, CsaB; PFAM: Polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB YP_004169789.1 KEGG: dge:Dgeo_1560 S-layer-like protein array-related protein; SPTR: S-layer-like protein array-related protein YP_004169790.1 COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683: IPR003736; KEGG: dra:DR_2406 ComA protein; PFAM: Thioesterase superfamily; SPTR: esterase DR_2406; TIGRFAM: phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1 YP_004169791.1 KEGG: dra:DR_0269 hypothetical protein; SPTR: Uncharacterized protein DR_0269 YP_004169792.1 KEGG: dge:Dgeo_2200 hypothetical protein; SPTR: uncharacterized protein YP_004169793.1 COGs: COG1637 nuclease of the RecB family; HAMAP: Uncharacterised protein family UPF0286; InterPro IPR002793; KEGG: ton:TON_1648 hypothetical protein; PFAM: Uncharacterised protein family UPF0286; SPTR: UPF0286 protein TON_1648; PFAM: Protein of unknown function DUF91 YP_004169794.1 COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154: IPR013149: IPR020843; KEGG: dra:DR_2279 alcohol dehydrogenase, zinc-containing; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; SMART: Polyketide synthase, enoylreductase; SPTR: Alcohol dehydrogenase, zinc-containing; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_004169795.1 COGs: COG4247 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase); InterPro IPR003431; KEGG: cyh:Cyan8802_4238 3-phytase; PFAM: phytase; PRIAM: 3-phytase; SPTR: 3-phytase; PFAM: phytase YP_004169796.1 KEGG: afw:Anae109_0432 major facilitator superfamily transporter; SPTR: Major facilitator superfamily transporter YP_004169797.1 COGs: COG5483 conserved hypothetical protein; KEGG: ddr:Deide_21870 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF488 YP_004169798.1 COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR004013: IPR011708: IPR004365: IPR004805: IPR 003141; KEGG: dge:Dgeo_0255 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: Polymerase/histidinol phosphatase, N-terminal; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; TIGRFAM: DNA-directed DNA polymerase III (polc) YP_004169799.1 COGs: COG5530 integral membrane protein; InterPro IPR014470; KEGG: dge:Dgeo_2260 hypothetical protein; PFAM: Uncharacterised conserved protein UCP01500; SPTR: uncharacterized protein; PFAM: Predicted integral membrane protein (DUF2270) YP_004169800.1 COGs: COG1194 A/G-specific DNA glycosylase; InterPro IPR003265: IPR003651: IPR005760; KEGG: dge:Dgeo_0019 A/G-specific adenine glycosylase; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; SPTR: A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD superfamily base excision DNA repair protein; TIGRFAM: A/G-specific adenine glycosylase YP_004169801.1 COGs: COG0020 undecaprenyl pyrophosphate synthase; HAMAP:Di-trans-poly-cis-decaprenylcistransferase-li ke; InterPro IPR001441; KEGG: dge:Dgeo_0020 undecaprenyl pyrophosphate synthase; PFAM:Di-trans-poly-cis-decaprenylcistransferase-lik e; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: undecaprenyl diphosphate synthase; TIGRFAM:Di-trans-poly-cis-decaprenylcistransferase- like; PFAM: undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase YP_004169802.1 COGs: COG2094 3-methyladenine DNA glycosylase; HAMAP: Methylpurine-DNA glycosylase (MPG); InterPro IPR003180; KEGG: aba:Acid345_4712 DNA-3-methyladenine glycosylase; PFAM: Methylpurine-DNA glycosylase (MPG); SPTR: 3-methyladenine DNA glycosylase; TIGRFAM: Methylpurine-DNA glycosylase (MPG); PFAM: Methylpurine-DNA glycosylase (MPG); TIGRFAM: DNA-3-methyladenine glycosylase (3mg) YP_004169803.1 KEGG: vcn:VOLCADRAFT_96690 hypothetical protein; SPTR: UvrD/REP helicase YP_004169804.1 KEGG: cyj:Cyan7822_5204 hypothetical protein; SPTR: uncharacterized protein YP_004169805.1 COGs: COG4938 conserved hypothetical protein; KEGG: cyj:Cyan7822_5205 hypothetical protein; SPTR: uncharacterized protein YP_004169806.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; KEGG: ddr:Deide_17826 resolvase, N terminal domain ( serine recombinase family, catalytic domain); PFAM: Resolvase, N-terminal; SMART: Resolvase, N-terminal; SPTR: resolvase, N terminal domain ( serine recombinase family, catalytic domain); manually curated; PFAM: Recombinase; Resolvase, N terminal domain YP_004169807.1 KEGG: bai:BAA_3820 hypothetical protein; SPTR: Conserved domain protein YP_004169808.1 KEGG: sru:SRU_1110 hypothetical protein; SPTR: uncharacterized protein YP_004169809.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107: IPR002104; KEGG: bao:BAMF_0884 tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: tyrosine recombinase xerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_004169810.1 COGs: COG0205 6-phosphofructokinase; HAMAP: Phosphofructokinase; InterPro IPR000023: IPR012828: IPR022953; KEGG: dge:Dgeo_1637 6-phosphofructokinase; PFAM: Phosphofructokinase domain; PRIAM: 6-phosphofructokinase; SPTR: 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase YP_004169811.1 COGs: COG0313 methyltransferase; HAMAP: ribosomal RNA small subunit methyltransferase I; InterPro IPR000878: IPR008189; KEGG: dge:Dgeo_1638 hypothetical protein; PFAM: Tetrapyrrole methylase; SPTR: Tetrapyrrole methylase family enzyme; TIGRFAM: Uncharacterised protein family UPF0011; PFAM: Tetrapyrrole (Corrin/porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family YP_004169812.1 KEGG: dge:Dgeo_1639 hypothetical protein; SPTR: uncharacterized protein YP_004169813.1 KEGG: dge:Dgeo_1640 hypothetical protein; SPTR: uncharacterized protein YP_004169814.1 COGs: COG4320 conserved hypothetical protein; InterPro IPR018721; KEGG: mar:MAE_02200 hypothetical protein; PFAM: Protein of unknown function DUF2252; SPTR: Similar to tr|Q82LS9|Q82LS9; PFAM: Uncharacterized protein conserved in bacteria (DUF2252) YP_004169815.1 KEGG: lif:LinJ22.0680 hypothetical protein; SPTR: Stage-specific S antigen homolog YP_004169816.1 InterPro IPR011701; KEGG: ddr:Deide_00270 major facilitator superfamily MFS_1, membrane protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1, membrane protein; PFAM: Major Facilitator Superfamily YP_004169817.1 COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; InterPro IPR004165: IPR012791; KEGG: dra:DR_A0067 CoA transferase, subunit B; PFAM: Coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SMART: Coenzyme A transferase; SPTR: CoA transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit YP_004169818.1 COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165: IPR012792; KEGG: dge:Dgeo_0808 3-oxoacid CoA-transferase, subunit A; PFAM: Coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SMART: Coenzyme A transferase; SPTR: 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit YP_004169819.1 KEGG: dge:Dgeo_0952 short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR YP_004169820.1 COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; InterPro IPR014044; KEGG: ddr:Deide_14920 conserved hypothetical protein, precursor; PFAM: CAP domain; SPTR: uncharacterized protein; PFAM: Cysteine-rich secretory protein family YP_004169821.1 KEGG: dge:Dgeo_2303 hypothetical protein; SPTR: uncharacterized protein YP_004169822.1 COGs: COG0101 Pseudouridylate synthase; HAMAP: Pseudouridine synthase I, TruA; InterPro IPR020097: IPR001406; KEGG: ddr:Deide_22930 tRNA-pseudouridine synthase I (tRNA pseudouridylate synthase I, tRNA-uridine isomerase); PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; PRIAM: tRNA-pseudouridine synthase I; SPTR: tRNA pseudouridine synthase A; TIGRFAM: Pseudouridine synthase I, TruA; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I YP_004169823.1 COGs: COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type alpha subunit; InterPro IPR001017; KEGG: dge:Dgeo_2338 pyruvate dehydrogenase (lipoamide); PFAM: Dehydrogenase, E1 component; PRIAM: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); SPTR: 2-oxoisovalerate dehydrogenase, OdbA; PFAM: Dehydrogenase E1 component YP_004169824.1 COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR005475: IPR005476; KEGG: dge:Dgeo_2339 transketolase, central region; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); SMART: Transketolase-like, pyrimidine-binding domain; SPTR: 2-oxoisovalerate dehydrogenase, ODBB; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain YP_004169825.1 KEGG: ddr:Deide_23460 hypothetical protein; SPTR: uncharacterized protein YP_004169826.1 COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR000089: IPR004167: IPR001078; KEGG: dge:Dgeo_2341 branched-chain alpha-keto acid dehydrogenase subunit E2; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; PRIAM: Dihydrolipoyllysine-residue acetyltransferase; SPTR: Dihydrolipoamide acyltransferase, (E2) component; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme YP_004169827.1 KEGG: hsa:100130897 hypothetical LOC100130897; SPTR: YD repeat protein YP_004169828.1 COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR013027: IPR004099: IPR006258; KEGG: dge:Dgeo_2323 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: Dihydrolipoyl dehydrogenase; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase YP_004169829.1 COGs: COG1324 conserved hypothetical protein involved in tolerance to divalent cations; InterPro IPR004323; KEGG: dge:Dgeo_0246 CutA1 divalent ion tolerance protein; PFAM: Divalent ion tolerance protein, CutA1; SPTR: CutA1 divalent ion tolerance protein; PFAM: CutA1 divalent ion tolerance protein YP_004169830.1 COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: bae:BATR1942_19665 H+/amino acid transporter; PFAM: Amino acid permease domain; SPTR: Amino acid permease-associated region; PFAM: Amino acid permease YP_004169831.1 COGs: COG2309 Leucyl aminopeptidase (aminopeptidase T); InterPro IPR000787; KEGG: ddr:Deide_01230 aminopeptidase, (heat stable aminopeptidase); PFAM: Peptidase M29, aminopeptidase II; SPTR: Aminopeptidase, (Heat stable aminopeptidase); PFAM: Thermophilic metalloprotease (M29) YP_004169832.1 KEGG: aeh:Mlg_2569 peptidase M23B; SPTR: Chromosome segregation protein SMC YP_004169833.1 COGs: COG3861 conserved hypothetical protein; InterPro IPR007903: IPR019060: IPR011756; KEGG: dge:Dgeo_1454 hypothetical protein; PFAM: Domain of unknown function DUF2382, C-terminal; PRC-barrel; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02271, C-terminal; PFAM: Domain of unknown function (DUF2382); PRC-barrel domain; TIGRFAM: conserved domain YP_004169834.1 KEGG: dra:DR_1067 hypothetical protein; SPTR: uncharacterized protein YP_004169835.1 InterPro IPR002696; KEGG: ddr:Deide_08465 hypothetical protein; PFAM: Protein of unknown function DUF37; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF37 YP_004169836.1 COGs: COG2986 histidine ammonia-lyase; HAMAP: histidine ammonia-lyase; InterPro IPR001106: IPR005921; KEGG: tra:Trad_0912 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; PRIAM: histidine ammonia-lyase; SPTR: histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine and histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase YP_004169837.1 COGs: COG1228 imidazolonepropionase and related amidohydrolase; HAMAP: imidazolonepropionase; InterPro IPR006680: IPR005920; KEGG: dge:Dgeo_2731 imidazolonepropionase; PFAM: Amidohydrolase 1; PRIAM: imidazolonepropionase; SPTR: imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: Amidohydrolase family; TIGRFAM: imidazolonepropionase YP_004169838.1 COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR006035; KEGG: tra:Trad_0915 arginase/agmatinase/formiminoglutamase; PFAM: Ureohydrolase; PRIAM: Agmatinase; SPTR: Arginase/agmatinase/formiminoglutamase; PFAM: Arginase family; TIGRFAM: agmatinase YP_004169839.1 COGs: COG2987 Urocanate hydratase; HAMAP: Urocanase; InterPro IPR000193; KEGG: dge:Dgeo_2735 urocanate hydratase; PFAM: Urocanase; PRIAM: Urocanate hydratase; SPTR: Urocanate hydratase; TIGRFAM: Urocanase; PFAM: Urocanase; TIGRFAM: urocanate hydratase YP_004169840.1 COGs: COG1414 Transcriptional regulator; InterPro IPR005471: IPR014757; KEGG: tra:Trad_0917 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; SPTR: Transcriptional regulator, IclR family; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator YP_004169841.1 InterPro IPR003088; KEGG: bph:Bphy_7193 cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I; PFAM: Cytochrome c YP_004169842.1 COGs: COG1092 SAM-dependent methyltransferase; InterPro IPR007848; KEGG: dge:Dgeo_0619 hypothetical protein; PFAM: Methyltransferase small; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SPTR: SAM-dependent methyltransferase containing PUA domain; PFAM: S-adenosylmethionine-dependent methyltransferase YP_004169843.1 COGs: COG3263 NhaP-type Na+/H+ and K+/H+ antiporter with a unique C-terminal domain; InterPro IPR006153: IPR006037; KEGG: dge:Dgeo_0222 potassium/proton antiporter; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, C-terminal; SPTR: Sodium/hydrogen exchanger; PFAM: TrkA-C domain; Sodium/hydrogen exchanger family YP_004169844.1 COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: dge:Dgeo_2141 ferric uptake regulator family protein; PFAM: Ferric-uptake regulator; SPTR: Ferric uptake regulator, Fur family; PFAM: Ferric uptake regulator family YP_004169845.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: dge:Dgeo_0195 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004169846.1 COGs: COG3947 Response regulator containing CheY-like receiver and SARP domains; InterPro IPR001789: IPR001867; KEGG: dra:DR_2556 response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Response regulator; PFAM: Response regulator receiver domain; Bacterial transcriptional activator domain YP_004169847.1 COGs: COG0360 ribosomal protein S6; HAMAP: ribosomal protein S6, plastid/chloroplast; InterPro IPR000529: IPR020814; KEGG: dra:DR_0098 30S ribosomal protein S6; PFAM: ribosomal protein S6; SPTR: 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; TIGRFAM: ribosomal protein S6 YP_004169848.1 COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424: IPR011344; KEGG: ddr:Deide_00120 single-stranded DNA-binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_004169849.1 COGs: COG0238 ribosomal protein S18; HAMAP: ribosomal protein S18; InterPro IPR001648; KEGG: dge:Dgeo_0164 30S ribosomal protein S18; PFAM: ribosomal protein S18; SPTR: 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; TIGRFAM: ribosomal protein S18 YP_004169850.1 COGs: COG0359 ribosomal protein L9; HAMAP: ribosomal protein L9, bacteria/chloroplast; InterPro IPR020070: IPR020069: IPR020594; KEGG: dge:Dgeo_0163 50S ribosomal protein L9; PFAM: ribosomal protein L9, C-terminal; ribosomal protein L9, N-terminal; SPTR: 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9, bacteria/chloroplast; PFAM: ribosomal protein L9, N-terminal domain; ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9 YP_004169851.1 KEGG: ddr:Deide_02190 hypothetical protein; SPTR: uncharacterized protein YP_004169852.1 InterPro IPR004843; KEGG: dge:Dgeo_0272 metallophosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: Calcineurin family phosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_004169853.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: ddr:Deide_23520 NAD dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family YP_004169854.1 COGs: COG0021 Transketolase; InterPro IPR005474: IPR005475: IPR005476: IPR005478; KEGG: dge:Dgeo_2283 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: formaldehyde transketolase; SMART: Transketolase-like, pyrimidine-binding domain; SPTR: Transketolase; TIGRFAM: Transketolase, bacterial-like; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: transketolase, bacterial and yeast YP_004169855.1 COGs: COG0194 Guanylate kinase; HAMAP: Guanylate kinase, sub-group; InterPro IPR008144: IPR017665: IPR008145; KEGG: dge:Dgeo_2284 guanylate kinase; PFAM: Guanylate kinase; PRIAM: Guanylate kinase; SMART: Guanylate kinase/L-type calcium channel; SPTR: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase YP_004169856.1 COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: dra:DR_2288 hypothetical protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing; SPTR: UPF0189 protein DR_2288; PFAM: Macro domain YP_004169857.1 KEGG: dge:Dgeo_2289 hypothetical protein; SPTR: uncharacterized protein YP_004169858.1 COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265: IPR003651; KEGG: dge:Dgeo_2290 HhH-GPD; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; SMART: HhH-GPD domain; SPTR: HhH-GPD; PFAM: HhH-GPD superfamily base excision DNA repair protein YP_004169860.1 COGs: COG0684 Demethylmenaquinone methyltransferase; HAMAP: ribonuclease E inhibitor RraA; InterPro IPR005493: IPR010203; KEGG: scl:sce6473 ribonuclease activity regulator protein RraA; PFAM: ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; SPTR: Regulator of ribonuclease activity A; TIGRFAM: ribonuclease E inhibitor RraA; PFAM: Demethylmenaquinone methyltransferase; TIGRFAM: RraA famliy YP_004169861.1 COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR020616: IPR020617: IPR002155; KEGG: bts:Btus_3242 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; PRIAM: Acetyl-CoA C-acetyltransferase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: Thiolase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases YP_004169862.1 COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006963: IPR006656: IPR006657; KEGG: dge:Dgeo_0402 formate dehydrogenase; PFAM: Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; PRIAM: Nitrate reductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain; SPTR: Molybdopterin oxidoreductase containing molydopterin dinucleotide binding domain; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain YP_004169863.1 COGs: COG2222 phosphosugar isomerase; InterPro IPR001347; KEGG: dge:Dgeo_2624 glutamine-fructose-6-phosphate transaminase (isomerizing); PFAM: Sugar isomerase (SIS); PRIAM: Glutamine--fructose-6-phosphate transaminase (isomerizing); SPTR: Glutamine-fructose-6-phosphate transaminase (Isomerizing); PFAM: SIS domain YP_004169864.1 COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase; InterPro IPR006680: IPR003764; KEGG: dge:Dgeo_2623 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase 1; PRIAM: N-acetylglucosamine-6-phosphate deacetylase; SPTR: N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase family; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase YP_004169865.1 COGs: COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component); InterPro IPR008731: IPR008279: IPR000121: IPR006318; KEGG: dge:Dgeo_2622 phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile domain; PRIAM: Phosphoenolpyruvate--protein phosphotransferase; SPTR: Phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, N-terminal; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase YP_004169866.1 COGs: COG1925 Phosphotransferase system HPr-related protein; InterPro IPR005698; KEGG: dge:Dgeo_2621 HPrNtr; PFAM: Phosphotransferase system, phosphocarrier HPr protein; SPTR: Phosphotransferase system HPr-related protein; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: PTS HPr component phosphorylation site; TIGRFAM: Phosphotransferase System HPr (HPr) Family YP_004169867.1 COGs: COG1263 Phosphotransferase system IIC components glucose/maltose/N-acetylglucosamine-specific; InterProIPR003352: IPR018113: IPR001127: IPR011299: IPR 011535; KEGG: dge:Dgeo_2620 phosphotransferase system, glucose-specific IIBC component; PFAM: Phosphotransferase system, EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site; Phosphotransferase system, sugar-specific permease EIIA 1 domain; PRIAM: Protein-N(pi)-phosphohistidine--sugar phosphotransferase; SPTR: Phosphotransferase system, glucose-specific IIBC component; TIGRFAM: Phosphotransferase system, glucose-specific IIBC component; Phosphotransferase system, glucose-like IIB component; Phosphotransferase system, sugar-specific permease EIIA 1 domain; PFAM: Phosphotransferase system, EIIC; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; phosphotransferase system, EIIB; TIGRFAM: PTS system, glucose-like IIB component; PTS system, glucose-specific IIBC component; PTS system, glucose subfamily, IIA component YP_004169868.1 COGs: COG1737 Transcriptional regulators; InterPro IPR000281: IPR001347; KEGG: dge:Dgeo_2619 RpiR family transcriptional regulator; PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); SPTR: Transcriptional regulator, RpiR family; PFAM: SIS domain; Helix-turn-helix domain, rpiR family YP_004169869.1 COGs: COG3915 conserved hypothetical protein; KEGG: dge:Dgeo_1559 hypothetical protein; SPTR: uncharacterized protein; PFAM: Oxidoreductase molybdopterin binding domain YP_004169870.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: dge:Dgeo_1558 periplasmic sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: Periplasmic sensor signal transduction histidine kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004169871.1 COGs: COG0083 homoserine kinase; HAMAP: homoserine kinase; InterPro IPR006204: IPR013750: IPR000870; KEGG: dge:Dgeo_2253 homoserine kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; SPTR: homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: homoserine kinase YP_004169872.1 COGs: COG0498 Threonine synthase; InterPro IPR001926: IPR004450; KEGG: dge:Dgeo_2252 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Threonine synthase; SPTR: Threonine synthase; TIGRFAM: Threonine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase YP_004169873.1 KEGG: ank:AnaeK_2798 response regulator receiver; SPTR: Response regulator receiver YP_004169874.1 InterPro IPR007341; KEGG: dge:Dgeo_2251 transglycosylase-associated protein; PFAM: Transglycosylase-associated protein; SPTR: Transglycosylase-associated protein; PFAM: Transglycosylase associated protein YP_004169875.1 HAMAP: ribosomal protein L28; InterPro IPR001383; KEGG: ddr:Deide_01281 ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: 50S ribosomal protein L28 1; TIGRFAM: ribosomal protein L28; PFAM: ribosomal L28 family; TIGRFAM: ribosomal protein L28 YP_004169876.1 COGs: COG0597 lipoprotein signal peptidase; HAMAP: Peptidase A8, signal peptidase II; InterPro IPR001872; KEGG: dge:Dgeo_2249 lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II; SPTR: lipoprotein signal peptidase 1; TIGRFAM: Peptidase A8, signal peptidase II; PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase YP_004169877.1 COGs: COG1854 LuxS protein involved in autoinducer AI2 synthesis; HAMAP: S-ribosylhomocysteinase (LuxS); InterPro IPR003815; KEGG: ddr:Deide_01300 S-ribosylhomocysteinase; PFAM: S-ribosylhomocysteinase (LuxS); PRIAM: S-ribosylhomocysteine lyase; SPTR: S-ribosylhomocysteine lyase; PFAM: S-ribosylhomocysteinase (LuxS) YP_004169878.1 COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; InterPro IPR002616: IPR004803; KEGG: dge:Dgeo_0330 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: Queuine tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming YP_004169879.1 InterPro IPR001119; KEGG: dra:DR_2577 S-layer protein, PFAM: S-layer homology domain; SPTR: S-layer protein, ; PFAM: S-layer homology domain YP_004169880.1 COGs: COG1227 Inorganic pyrophosphatase/exopolyphosphatase; InterPro IPR001667: IPR004097; KEGG: dge:Dgeo_0332 manganese-dependent inorganic pyrophosphatase; PFAM: DHHA2; Phosphoesterase, RecJ-like; PRIAM: Inorganic diphosphatase; SPTR: Inorganic diphosphatase; PFAM: DHH family; DHHA2 domain YP_004169881.1 COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR013221: IPR004101: IPR001645; KEGG: dge:Dgeo_0333 FolC bifunctional protein; PFAM: Mur ligase, C-terminal; Mur ligase, central; SPTR: FolC bifunctional protein; TIGRFAM: Folylpolyglutamate synthetase; manually curated; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase YP_004169882.1 COGs: COG2317 Zn-dependent carboxypeptidase; InterPro IPR001333; KEGG: ddr:Deide_20590 carboxypeptidase Taq (thermostable carboxypeptidase 1); PFAM: Peptidase M32, carboxypeptidase Taq metallopeptidase; PRIAM: Carboxypeptidase Taq; SPTR: carboxypeptidase Taq (Thermostable carboxypeptidase 1); PFAM: Carboxypeptidase Taq (M32) metallopeptidase YP_004169883.1 KEGG: dge:Dgeo_0335 hypothetical protein; SPTR: uncharacterized protein YP_004169884.1 InterPro IPR001387; KEGG: dge:Dgeo_0336 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix YP_004169885.1 KEGG: ddr:Deide_00420 hypothetical protein; SPTR: uncharacterized protein YP_004169886.1 COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR006035: IPR014033; KEGG: dge:Dgeo_0292 arginase; PFAM: Ureohydrolase; PRIAM: Arginase; SPTR: Arginase; TIGRFAM: Arginase, subgroup; PFAM: Arginase family; TIGRFAM: arginase YP_004169887.1 COGs: COG1399 metal-binding possibly nucleic acid-binding protein; InterPro IPR003772; KEGG: dra:DR_2570 hypothetical protein; PFAM: Protein of unknown function DUF177; SPTR: uncharacterized protein; PFAM: Uncharacterized ACR, COG1399 YP_004169888.1 COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; InterPro IPR002820: IPR023045; KEGG: dge:Dgeo_0338 molybdenum cofactor biosynthesis protein MoaC; PFAM: Molybdopterin cofactor biosynthesis C (MoaC) domain; SPTR: Molybdenum cofactor biosynthesis protein C; TIGRFAM: Molybdenum cofactor biosynthesis C; PFAM: MoaC family; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC YP_004169889.1 KEGG: dge:Dgeo_2257 hypothetical protein; SPTR: uncharacterized protein YP_004169890.1 KEGG: dge:Dgeo_2258 hypothetical protein; SPTR: uncharacterized protein YP_004169891.1 COGs: COG0333 ribosomal protein L32; HAMAP: ribosomal protein L32p; InterPro IPR002677; KEGG: dge:Dgeo_0013 50S ribosomal protein L32; PFAM: ribosomal protein L32p; SPTR: 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32p; PFAM: ribosomal L32p protein family; TIGRFAM: ribosomal protein L32 YP_004169892.1 COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: dge:Dgeo_2305 LmbE-like protein protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: LmbE-like protein protein; PFAM: GlcNAc-PI de-N-acetylase YP_004169893.1 InterPro IPR005320: IPR000086; KEGG: vha:VIBHAR_02246 hypothetical protein; PFAM: NUDIX hydrolase domain; Peptidase S51; SPTR: uncharacterized protein; PFAM: Peptidase family S51; NUDIX domain YP_004169894.1 COGs: COG0448 ADP-glucose pyrophosphorylase; InterPro IPR005835: IPR001451; KEGG: ddr:Deide_17490 glucose-1-phosphate adenylyltransferase (ADP-glucose diphosphorylase, ADP-glucose synthase); PFAM: Nucleotidyl transferase; Bacterial transferase hexapeptide repeat; PRIAM: Glucose-1-phosphate adenylyltransferase; SPTR: Glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase YP_004169895.1 COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: dge:Dgeo_1903 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; manually curated; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase YP_004169896.1 KEGG: dge:Dgeo_0022 hypothetical protein; SPTR: Ferredoxin; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit YP_004169897.1 KEGG: ddr:Deide_04690 conserved hypothetical protein, precursor; SPTR: uncharacterized protein YP_004169898.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dra:DR_2622 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: uncharacterized protein; PFAM: Methyltransferase domain YP_004169899.1 COGs: COG0240 Glycerol-3-phosphate dehydrogenase; HAMAP: Glycerol-3-phosphate dehydrogenase, NAD-dependent; InterPro IPR011128: IPR006109: IPR006168; KEGG: dge:Dgeo_2043 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; PFAM: Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal; SPTR: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YP_004169900.1 COGs: COG2310 Uncharacterized protein involved in stress response homologs of TerZ and cAMP-binding protein CABP1; InterPro IPR003325; KEGG: alv:Alvin_0858 stress protein; PFAM: Bacterial stress protein; SPTR: Stress protein; PFAM: Bacterial stress protein YP_004169901.1 COGs: COG0557 Exoribonuclease R; InterPro IPR001900; KEGG: dge:Dgeo_0032 ribonuclease II; PFAM: ribonuclease II/R; SMART: ribonuclease II/R; SPTR: ribonuclease II, VacB-like protein; PFAM: RNB domain YP_004169902.1 KEGG: dge:Dgeo_0031 hypothetical protein; SPTR: uncharacterized protein YP_004169903.1 KEGG: dge:Dgeo_0030 hypothetical protein; SPTR: uncharacterized protein YP_004169904.1 COGs: COG3877 conserved hypothetical protein; InterPro IPR018658; KEGG: dra:DR_0017 hypothetical protein; PFAM: Protein of unknown function DUF2089; SPTR: uncharacterized protein; PFAM: Protein of unknown function(DUF2089) YP_004169905.1 KEGG: dia:Dtpsy_2228 sporulation domain protein; SPTR: Sporulation domain protein YP_004169906.1 COGs: COG4762 conserved hypothetical protein; InterPro IPR018960; KEGG: scl:sce0916 hypothetical protein; PFAM: Domain of unknown function DUF1990; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1990) YP_004169907.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209: IPR007280; KEGG: ddr:Deide_2p02200 peptidase S8, precursor, subtilase family; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Peptidase, C-terminal, archaeal/bacterial; SPTR: peptidase S8,, Subtilase family; PFAM: Bacterial pre-peptidase C-terminal domain; Subtilase family YP_004169908.1 InterPro IPR011717: IPR001867; KEGG: ddr:Deide_2p02180 transcriptional regulator; SPTR: transcriptional regulator YP_004169909.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660: IPR003661: IPR003594; KEGG: ddr:Deide_01480 histidine kinase, classic; membrane protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SPTR: histidine kinase, classic; membrane protein; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; TIGRFAM: heavy metal sensor kinase YP_004169910.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: ddr:Deide_01470 response regulator, CheY; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004169911.1 COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); KEGG: ddr:Deide_01461 adenylate/guanylate cyclase; SPTR: adenylate/guanylate cyclase; PFAM: Adenylate and Guanylate cyclase catalytic domain YP_004169912.1 KEGG: dge:Dgeo_2320 hypothetical protein; SPTR: uncharacterized protein YP_004169913.1 KEGG: dge:Dgeo_2321 hypothetical protein; SPTR: uncharacterized protein YP_004169914.1 COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537: IPR006371; KEGG: dge:Dgeo_2322 4-hydroxybenzoate polyprenyltransferase, PFAM: UbiA prenyltransferase; SPTR: 4-hydroxybenzoate polyprenyltransferase, ; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase-related; PFAM: UbiA prenyltransferase family; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase YP_004169915.1 COGs: COG4370 conserved hypothetical protein; InterPro IPR019994; KEGG: dra:DR_2625 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03492; TIGRFAM: conserved hypothetical protein YP_004169916.1 InterPro IPR011701; KEGG: dge:Dgeo_0561 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily YP_004169917.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dge:Dgeo_0560 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, family 2; PFAM: Glycosyl transferase family 2 YP_004169918.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: mrb:Mrub_1223 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1 YP_004169919.1 InterPro IPR002509; KEGG: dra:DR_1077 chitooligosaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Chitooligosaccharide deacetylase YP_004169920.1 COGs: COG0481 Membrane GTPase LepA; HAMAP: GTP-binding protein LepA; InterProIPR000795: IPR004161: IPR000640: IPR013842: IPR 005225: IPR006297; KEGG: dge:Dgeo_1624 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; SMART: Translation elongation factor EFG/EF2, C-terminal; SPTR: GTP-binding protein lepA; TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; GTP-binding protein LepA C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain YP_004169921.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: dra:DR_0658 hypothetical protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily YP_004169922.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: mrb:Mrub_1382 diguanylate cyclase and serine/threonine protein kinase with TPR repeats; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase and serine/threonine protein kinase with TPR repeats; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004169923.1 COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR003660: IPR003661: IPR003594; KEGG: dra:DR_0892 sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Sensor histidine kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004169924.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789: IPR000792; KEGG: dra:DR_0891 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR: DNA-binding response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004169925.1 InterPro IPR003010; KEGG: dge:Dgeo_1800 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase YP_004169926.1 COGs: COG0184 ribosomal protein S15P/S13E; InterPro IPR000589: IPR005290; KEGG: dra:DR_0341 30S ribosomal protein S15; PFAM: ribosomal protein S15; SPTR: 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial-type; PFAM: ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle YP_004169927.1 COGs: COG0523 GTPase (G3E family); InterPro IPR003495: IPR011629; KEGG: ddr:Deide_00450 cobalamin synthesis protein, P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SPTR: Cobalamin synthesis protein, P47K; PFAM: CobW/HypB/UreG, nucleotide-binding domain; Cobalamin synthesis protein cobW C-terminal domain YP_004169928.1 COGs: COG0692 uracil DNA glycosylase; HAMAP: uracil-DNA glycosylase; InterPro IPR005122: IPR002043; KEGG: ddr:Deide_00830 uracil-DNA glycosylase; PFAM: uracil-DNA glycosylase-like; SPTR: uracil-DNA glycosylase; TIGRFAM: uracil-DNA glycosylase; PFAM: uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase YP_004169929.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933: IPR011650; KEGG: ddr:Deide_01380 peptidase M20; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Beta-Ala-His dipeptidase; SPTR: peptidase M20; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain YP_004169930.1 COGs: COG2334 homoserine kinase type II (protein kinase fold); InterPro IPR002575; KEGG: ppg:PputGB1_1793 aminoglycoside phosphotransferase; PFAM: Aminoglycoside phosphotransferase; SPTR: Aminoglycoside phosphotransferase; PFAM: Phosphotransferase enzyme family YP_004169931.1 COGs: COG3191 L-aminopeptidase/D-esterase; InterPro IPR005321; KEGG: ddr:Deide_19201 L-aminopeptidase/D-esterase; PFAM: Peptidase S58, DmpA; SPTR: L-aminopeptidase/D-esterase; PFAM: Peptidase family S58 YP_004169932.1 COGs: COG0366 Glycosidase; InterPro IPR006589: IPR006047; KEGG: ddr:Deide_07660 glycosidase; PFAM: Glycosyl hydrolase, family 13, catalytic domain; PRIAM: Cyclomaltodextrin glucanotransferase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: glycosidase; PFAM: Alpha amylase, catalytic domain YP_004169933.1 COGs: COG2321 metalloprotease; InterPro IPR007343; KEGG: dge:Dgeo_2115 protein of unknown function, zinc metallopeptidase PFAM: Uncharacterised protein family, zinc metallopeptidase SPTR: uncharacterized protein; PFAM: neutral zinc metallopeptidase YP_004169934.1 COGs: COG1451 metal-dependent hydrolase; InterPro IPR002725; KEGG: ddr:Deide_19052 hypothetical protein; PFAM: Protein of unknown function DUF45; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF45 YP_004169935.1 KEGG: ddr:Deide_04830 hypothetical protein; SPTR: uncharacterized protein YP_004169936.1 KEGG: dre:564866 si:ch211-272f3.4; SPTR: Novel protein similar to vertebrate thyroid hormone receptor interactor 12 (TRIP12) YP_004169937.1 KEGG: dra:DR_0359 hypothetical protein; SPTR: uncharacterized protein YP_004169938.1 COGs: COG0354 aminomethyltransferase related to GcvT; InterPro IPR017703: IPR006222: IPR013977; KEGG: dge:Dgeo_2127 glycine cleavage T protein (aminomethyl transferase); PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; SPTR: Glycine cleavage T protein (Aminomethyl transferase); TIGRFAM: Folate-binding, YgfZ; PFAM: Aminomethyltransferase folate-binding domain; Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: folate-binding protein YgfZ YP_004169939.1 KEGG: amd:AMED_6243 amino acid adenylation domain-containing protein; SPTR: FG-GAP repeat/HVR domain protein YP_004169940.1 COGs: COG0450 Peroxiredoxin; InterPro IPR000866; KEGG: dge:Dgeo_0122 redoxin; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; SPTR: Redoxin; PFAM: AhpC/TSA family YP_004169941.1 COGs: COG2860 membrane protein; InterPro IPR005115; KEGG: dge:Dgeo_0012 hypothetical protein; PFAM: Uncharacterised protein family UPF0126; SPTR: Conserved membrane protein UPF0126; PFAM: UPF0126 domain YP_004169942.1 COGs: COG2761 dithiol-disulfide isomerase involved in polyketide biosynthesis; InterPro IPR001853; KEGG: dra:DR_2335 hypothetical protein; PFAM: DSBA-like thioredoxin domain; SPTR: uncharacterized protein; PFAM: DSBA-like thioredoxin domain YP_004169943.1 KEGG: dra:DR_2309 hypothetical protein; SPTR: uncharacterized protein YP_004169944.1 KEGG: dra:DR_2310 hypothetical protein; SPTR: uncharacterized protein YP_004169945.1 COGs: COG3404 Methenyl tetrahydrofolate cyclohydrolase; InterPro IPR007044; KEGG: ddr:Deide_20220 methenyltetrahydrofolate cyclohydrolase; PFAM: Cyclodeaminase/cyclohydrolase; SPTR: methenyltetrahydrofolate cyclohydrolase; PFAM: formiminotransferase-cyclodeaminase YP_004169946.1 COGs: COG1803 Methylglyoxal synthase; HAMAP: Methylglyoxal synthase; InterPro IPR004363: IPR011607; KEGG: dge:Dgeo_0241 methylglyoxal synthase; PFAM: Methylglyoxal synthase-like domain; PRIAM: Methylglyoxal synthase; SMART: Methylglyoxal synthase-like domain; SPTR: Methylglyoxal synthase; TIGRFAM: Methylglyoxal synthase; PFAM: MGS-like domain; TIGRFAM: methylglyoxal synthase YP_004169947.1 InterPro IPR013229; KEGG: dge:Dgeo_0814 PEGA domain-containing protein; PFAM: PEGA; SPTR: S-layer-like array-related protein containing PEGA-like domain; PFAM: PEGA domain YP_004169948.1 InterPro IPR001401; KEGG: dge:Dgeo_2106 dynamin; PFAM: Dynamin, GTPase domain; SPTR: Dynamin-like GTPase; PFAM: Dynamin family; TIGRFAM: small GTP-binding protein domain YP_004169949.1 KEGG: ske:Sked_27180 sugar kinase, ribokinase; SPTR: Sugar kinase, ribokinase YP_004169950.1 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: dge:Dgeo_1060 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; SPTR: Amino acid ABC transporter, periplasmic protein, His/Glu/Gln/Arg/opine; PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_004169951.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: dge:Dgeo_1223 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily YP_004169952.1 InterPro IPR004843; KEGG: ddr:Deide_19310 metallophosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_004169953.1 KEGG: ske:Sked_22560 ATP-dependent DNA helicase RecQ; SPTR: uncharacterized protein YP_004169954.1 COGs: COG2897 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: dge:Dgeo_2206 thiosulfate sulfurtransferase; PFAM: Rhodanese-like; PRIAM: Thiosulfate sulfurtransferase; SMART: Rhodanese-like; SPTR: Thiosulfate sulfurtransferase; PFAM: Rhodanese-like domain YP_004169955.1 COGs: COG2166 SufE protein probably involved in Fe-S center assembly; InterPro IPR003808; KEGG: dge:Dgeo_2207 Fe-S metabolism associated SufE; PFAM: Fe-S metabolism associated SufE; SPTR: Fe-S metabolism associated SufE; PFAM: Fe-S metabolism associated domain YP_004169956.1 KEGG: bbe:BBR47_31370 hypothetical protein; SPTR: uncharacterized protein YP_004169957.1 SPTR: Major facilitator superfamily (MFS) transporter YP_004169958.1 KEGG: svi:Svir_23500 hypothetical protein; SPTR: uncharacterized protein YP_004169959.1 KEGG: bce:BC3303 hypothetical protein; SPTR: uncharacterized protein YP_004169960.1 KEGG: bcb:BCB4264_A3290 hypothetical protein; SPTR: uncharacterized protein YP_004169961.1 KEGG: cyc:PCC7424_4151 AAA ATPase containing von Willebrand factor type A (vWA) domain; SPTR: AAA ATPase containing von Willebrand factor type A (VWA) domain YP_004169962.1 InterPro IPR007837; KEGG: ddr:Deide_2p02260 DinB; PFAM: DinB; SPTR: dinB; PFAM: DinB family YP_004169963.1 KEGG: dra:DR_0780 hypothetical protein; SPTR: uncharacterized protein YP_004169964.1 KEGG: mpo:Mpop_3989 hypothetical protein; SPTR: Predicted protein YP_004169965.1 InterPro IPR017515: IPR004360; KEGG: dge:Dgeo_1790 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; TIGRFAM: Methylmalonyl-CoA epimerase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase YP_004169966.1 COGs: COG5652 integral membrane protein; InterPro IPR006976; KEGG: dge:Dgeo_1791 VanZ like protein; PFAM: VanZ-like; SPTR: VanZ like protein; PFAM: VanZ like family YP_004169967.1 KEGG: dge:Dgeo_1651 hypothetical protein; SPTR: uncharacterized protein YP_004169968.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593: IPR003439; KEGG: dra:DR_2404 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein, MsbA family; PFAM: ABC transporter YP_004169969.1 KEGG: ddr:Deide_23080 hypothetical protein; SPTR: uncharacterized protein YP_004169970.1 COGs: COG0223 Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; InterPro IPR005794: IPR002376: IPR005793; KEGG: ddr:Deide_23090 methionyl-tRNA formyltransferase (methionyl-transfer ribonucleic transformylase, N(10)-formyltetrahydrofolic-methionyl-transfer ribonucleic transformylase); PFAM: formyl transferase, N-terminal; formyl transferase, C-terminal; PRIAM: Methionyl-tRNA formyltransferase; SPTR: Methionyl-tRNA formyltransferase; TIGRFAM: Methionyl-tRNA formyltransferase; PFAM: formyl transferase; formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase YP_004169971.1 COGs: COG0242 N-formylmethionyl-tRNA deformylase; HAMAP: formylmethionine deformylase; InterPro IPR000181; KEGG: dge:Dgeo_2292 peptide deformylase; PFAM: formylmethionine deformylase; PRIAM: Peptide deformylase; SPTR: Peptide deformylase; TIGRFAM: formylmethionine deformylase; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase YP_004169972.1 InterPro IPR012505; KEGG: dge:Dgeo_0134 YbbR-like protein; PFAM: YbbR-like; SPTR: YbbR-like protein YP_004169973.1 COGs: COG1624 conserved hypothetical protein; InterPro IPR014046: IPR003390; KEGG: dge:Dgeo_0135 hypothetical protein; PFAM: DNA integrity scanning protein, DisA, N-terminal; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00159; PFAM: DisA bacterial checkpoint controller nucleotide-binding; TIGRFAM: conserved hypothetical protein TIGR00159 YP_004169974.1 KEGG: dge:Dgeo_2312 hypothetical protein; SPTR: uncharacterized protein YP_004169975.1 COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: dge:Dgeo_0053 hypothetical protein; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria; SPTR: Small ATP-binding protein UPF0079; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family YP_004169976.1 KEGG: dge:Dgeo_0054 hypothetical protein; SPTR: uncharacterized protein YP_004169977.1 KEGG: ddr:Deide_00510 hypothetical protein; SPTR: uncharacterized protein YP_004169978.1 InterPro IPR004942; KEGG: dge:Dgeo_0056 roadblock/LC7 domain-contain protein; PFAM: Dynein light chain-related; SMART: Dynein light chain-related; SPTR: Roadblock/LC7 YP_004169979.1 COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR010962: IPR004839; KEGG: dge:Dgeo_0057 pyridoxal phosphate-dependent acyltransferase, PFAM: Aminotransferase, class I/classII; PRIAM: Glycine C-acetyltransferase; SPTR: 7-keto-8-aminopelargonate synthetase-like enzyme; TIGRFAM: Pyridoxal phosphate-dependent acyltransferase, PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; pyridoxal phosphate-dependent acyltransferase YP_004169980.1 KEGG: dra:DR_2302 hypothetical protein; SPTR: uncharacterized protein YP_004169981.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR000383; KEGG: ddr:Deide_2p01370 peptidase; SPTR: peptidase; PFAM: Prolyl oligopeptidase family YP_004169982.1 KEGG: rha:RHA1_ro06001 ABC amino acid transport system, permease; SPTR: DynU6 YP_004169983.1 InterPro IPR018391: IPR002372; KEGG: ade:Adeh_1634 WD-40 repeat-containing protein; PFAM: Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: WD-40 repeat-containing protein YP_004169984.1 InterPro IPR011717; KEGG: dge:Dgeo_0439 SARP family transcriptional regulator; SPTR: Transcriptional regulator, SARP family YP_004169985.1 KEGG: dra:DR_2533 hypothetical protein; SPTR: uncharacterized protein YP_004169986.1 KEGG: dra:DR_1045 hypothetical protein; SPTR: uncharacterized protein YP_004169987.1 COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterPro IPR005259; KEGG: dge:Dgeo_0271 primosomal protein N'; SPTR: Primosomal protein N'; TIGRFAM: Primosomal protein n; TIGRFAM: primosomal protein N' YP_004169988.1 COGs: COG0753 Catalase; InterPro IPR018028: IPR010582; KEGG: ddr:Deide_2p00330 catalase; PFAM: Catalase-related subgroup; Catalase-related immune responsive; PRIAM: Catalase; SPTR: Catalase; PFAM: Catalase; Catalase-related immune-responsive YP_004169989.1 COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR019904: IPR003718; KEGG: dge:Dgeo_0526 OsmC-like protein protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: OsmC-like protein protein; TIGRFAM: Peroxiredoxin, osmotically inducible protein C, subgroup; PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, OsmC subfamily YP_004169990.1 COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: ddr:Deide_1p01737 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: transcriptional regulator, marR family; PFAM: MarR family YP_004169991.1 COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); InterPro IPR001279; KEGG: ddr:Deide_22410 competence protein ComEC, hydrolase (metallo-beta-lactamase superfamily)-like protein precursor; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: Competence protein ComEC, Hydrolase (Metallo-beta-lactamase superfamily)-like protein; PFAM: Metallo-beta-lactamase superfamily YP_004169992.1 COGs: COG0492 Thioredoxin reductase; InterPro IPR013027; KEGG: ddr:Deide_23360 thioredoxin reductase, pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Thioredoxin reductase, Pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004169993.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: mrb:Mrub_2422 periplasmic binding protein; PFAM: Periplasmic binding protein; SPTR: Periplasmic binding protein; PFAM: Periplasmic binding protein YP_004169994.1 COGs: COG0114 Fumarase; HAMAP: Fumarate hydratase, class II; InterPro IPR005677: IPR022761: IPR018951; KEGG: ddr:Deide_23050 fumarate hydratase; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal; PRIAM: Fumarate hydratase; SPTR: fumarate hydratase class II (Fumarase); TIGRFAM: Fumarate hydratase, class II; PFAM: Lyase; Fumarase C C-terminus; TIGRFAM: fumarate hydratase, class II YP_004169995.1 COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: dge:Dgeo_0951 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; PFAM: Polysaccharide deacetylase YP_004169996.1 COGs: COG2390 Transcriptional regulator contains sigma factor-related N-terminal domain; InterPro IPR007324; KEGG: ddr:Deide_2p00240 transcriptional regulator, DeoR family; PFAM: Sugar-binding domain, SPTR: transcriptional regulator, DeoR family; PFAM: Sigma-70, region 4; sugar-binding domain YP_004169997.1 COGs: COG0580 Glycerol uptake facilitator and related permease (Major Intrinsic Protein Family); InterPro IPR012269: IPR000425; KEGG: ddr:Deide_2p00230 glycerol uptake facilitator protein, aquaporin; membrane protein; PFAM: Major intrinsic protein; SPTR: glycerol uptake facilitator protein, aquaporin; membrane protein; TIGRFAM: Aquaporin; PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins YP_004169998.1 COGs: COG0554 Glycerol kinase; HAMAP: Glycerol kinase; InterPro IPR005999: IPR018484: IPR018485; KEGG: ddr:Deide_2p00220 glycerol kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; PRIAM: Glycerol kinase; SPTR: Glycerol kinase; TIGRFAM: Glycerol kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: glycerol kinase YP_004169999.1 COGs: COG0578 Glycerol-3-phosphate dehydrogenase; InterPro IPR006076; KEGG: dra:DR_1019 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase; PRIAM: Glycerol-3-phosphate dehydrogenase; SPTR: Glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase YP_004170000.1 COGs: COG2309 Leucyl aminopeptidase (aminopeptidase T); InterPro IPR000787; KEGG: dge:Dgeo_0071 peptidase M29, aminopeptidase II; PFAM: Peptidase M29, aminopeptidase II; SPTR: Peptidase M29, aminopeptidase II; manually curated; PFAM: Thermophilic metalloprotease (M29) YP_004170001.1 InterPro IPR002035: IPR008912; KEGG: ddr:Deide_18690 hypothetical protein; PFAM: vWA containing CoxE-like; SMART: von Willebrand factor, type A; SPTR: uncharacterized protein; PFAM: VWA domain containing CoxE-like protein YP_004170002.1 KEGG: ddr:Deide_18700 hypothetical protein; SPTR: uncharacterized protein YP_004170003.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011704; KEGG: ddr:Deide_18710 hypothetical protein; PFAM: ATPase, AAA-5; SPTR: uncharacterized protein; PFAM: AAA domain (dynein-related subfamily) YP_004170004.1 KEGG: ddr:Deide_18720 hypothetical protein; SPTR: uncharacterized protein YP_004170005.1 InterPro IPR007527; KEGG: ddr:Deide_18730 hypothetical protein; SPTR: uncharacterized protein; PFAM: SWIM zinc finger YP_004170006.1 COGs: COG2169 Adenosine deaminase; InterPro IPR018060: IPR014048: IPR004026: IPR000005; KEGG: bge:BC1002_3162 transcriptional regulator, AraC family; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Ada DNA repair, metal-binding; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; SPTR: Transcriptional regulator, AraC family; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Metal binding domain of Ada; 6-O-methylguanine DNA methyltransferase, DNA binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family; TIGRFAM: O-6-methylguanine DNA methyltransferase YP_004170007.1 COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: dra:DR_2598 hypothetical protein; PFAM: Uncharacterised protein family UPF0047; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme YP_004170008.1 KEGG: ddr:Deide_11140 hypothetical protein; SPTR: uncharacterized protein YP_004170009.1 COGs: COG4362 Nitric oxide synthase oxygenase domain; InterPro IPR004030; KEGG: dge:Dgeo_0268 nitric-oxide synthase; PFAM: Nitric oxide synthase, oxygenase domain; PRIAM: Nitric-oxide synthase; SPTR: Nitric oxide synthase oxygenase; PFAM: Nitric oxide synthase, oxygenase domain YP_004170010.1 InterPro IPR000073; KEGG: sth:STH1392 hydrolase; PFAM: Alpha/beta hydrolase fold-1; SPTR: hydrolase; manually curated; PFAM: alpha/beta hydrolase fold YP_004170011.1 KEGG: tra:Trad_0148 hypothetical protein; SPTR: uncharacterized protein YP_004170012.1 COGs: COG0775 Nucleoside phosphorylase; InterPro IPR019963: IPR000845; KEGG: dge:Dgeo_0447 hypothetical protein; PFAM: Nucleoside phosphorylase domain; SPTR: 5'-methylthioadenosine S-adenosylhomocysteine nucleosidase related protein; TIGRFAM: Futalosine nucleosidase; PFAM: Phosphorylase superfamily; TIGRFAM: futalosine nucleosidase YP_004170013.1 KEGG: dge:Dgeo_0479 SARP family transcriptional regulator; SPTR: Transcriptional regulator, SARP family; PFAM: Bacterial transcriptional activator domain YP_004170014.1 KEGG: vcn:VOLCADRAFT_87768 hypothetical protein YP_004170015.1 COGs: COG1643 HrpA-like helicase; InterProIPR014001: IPR001650: IPR007502: IPR010225: IPR 013689; KEGG: dge:Dgeo_0976 ATP-dependent helicase HrpB; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase-associated domain; Helicase, C-terminal; SMART: Helicase-associated domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: ATP-dependent helicase HrpB; TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: Helicase conserved C-terminal domain; ATP-dependent helicase C-terminal; Helicase associated domain (HA2); DEAD/DEAH box helicase; TIGRFAM: ATP-dependent helicase HrpB YP_004170016.1 COGs: COG1540 conserved hypothetical protein; InterPro IPR005501; KEGG: ddr:Deide_03440 LamB/YcsF protein; PFAM: Uncharacterised protein family UPF0271, LamB/YcsF; SPTR: LamB/YcsF protein; PFAM: LamB/YcsF family YP_004170017.1 COGs: COG1984 Allophanate hydrolase subunit 2; InterPro IPR003778; KEGG: dge:Dgeo_1802 allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2; PRIAM: urea carboxylase; SMART: Allophanate hydrolase subunit 2; SPTR: urea carboxylase/allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2; TIGRFAM: biotin-dependent carboxylase uncharacterized domain YP_004170018.1 COGs: COG2049 Allophanate hydrolase subunit 1; InterPro IPR003833: IPR010016; KEGG: ddr:Deide_03460 allophanate hydrolase subunit 1; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; SPTR: urea carboxylase/allophanate hydrolase subunit 1; TIGRFAM: Conserved hypothetical protein CHP00370; PFAM: Allophanate hydrolase subunit 1; TIGRFAM: conserved hypothetical protein TIGR00370 YP_004170019.1 COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); KEGG: ddr:Deide_19680 acetyltransferase, isoleucine patch superfamily-like protein; SPTR: acetyltransferase, isoleucine patch superfamily-like protein YP_004170020.1 KEGG: ddr:Deide_21820 hypothetical protein; SPTR: uncharacterized protein YP_004170021.1 KEGG: dge:Dgeo_0257 hypothetical protein; SPTR: Dps (Ferritin) family DNA-binding protein YP_004170022.1 COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR018027: IPR004514: IPR020058: IPR020059; KEGG: dge:Dgeo_2188 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; Asn/Gln amidotransferase; PRIAM: Glutamine--tRNA ligase; SMART: Asn/Gln amidotransferase; SPTR: Glutaminyl-tRNA synthetase containing GatB/Yqey domain; TIGRFAM: Glutaminyl-tRNA synthetase, class Ic; PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; GatB domain; TIGRFAM: glutaminyl-tRNA synthetase YP_004170023.1 KEGG: tra:Trad_0148 hypothetical protein; SPTR: uncharacterized protein YP_004170024.1 COGs: COG0793 Periplasmic protease; InterPro IPR005151; KEGG: gvi:glr2547 interphotoreceptor retinoid-binding protein; PFAM: Peptidase S41; SMART: Peptidase S41; SPTR: Glr2547 protein; PFAM: Peptidase family S41 YP_004170025.1 KEGG: dge:Dgeo_2187 GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004170026.1 COGs: COG1979 Uncharacterized oxidoreductase Fe-dependent alcohol dehydrogenase family; InterPro IPR001670; KEGG: sth:STH535 NADH-dependent butanol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; PRIAM: Alcohol dehydrogenase (NADP(+)); SPTR: Iron-containing alcohol dehydrogenase; PFAM: Iron-containing alcohol dehydrogenase YP_004170027.1 KEGG: ddr:Deide_01160 radiation-induced protein; SPTR: radiation-induced protein YP_004170028.1 InterPro IPR000182; KEGG: dra:DR_2255 hypothetical protein; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: uncharacterized protein YP_004170029.1 InterPro IPR000182; KEGG: ddr:Deide_00610 hypothetical protein; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: uncharacterized protein; PFAM: Acetyltransferase (GNAT) family YP_004170030.1 KEGG: dge:Dgeo_2281 hypothetical protein; SPTR: uncharacterized protein YP_004170031.1 COGs: COG4102 conserved hypothetical protein; InterPro IPR006311: IPR010869; KEGG: ddr:Deide_00630 hypothetical protein; PFAM: Protein of unknown function DUF1501; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1501) YP_004170032.1 COGs: COG5267 conserved hypothetical protein; InterPro IPR014917; KEGG: ddr:Deide_00640 hypothetical protein; PFAM: Protein of unknown function DUF1800; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1800) YP_004170033.1 KEGG: dge:Dgeo_2271 sigma E regulatory protein, MucB/RseB; SPTR: sigma E regulatory protein, MucB/RseB YP_004170034.1 KEGG: ddr:Deide_00660 hypothetical protein; SPTR: uncharacterized protein YP_004170035.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: dge:Dgeo_2269 ECF subfamily RNA polymerase sigma-24 factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004170036.1 COGs: COG3231 Aminoglycoside phosphotransferase; InterPro IPR002575; KEGG: dge:Dgeo_2256 aminoglycoside phosphotransferase; PFAM: Aminoglycoside phosphotransferase; PRIAM: Kanamycin kinase; SPTR: Aminoglycoside phosphotransferase; PFAM: Phosphotransferase enzyme family YP_004170037.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: ddr:Deide_22040 peptidase S8; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; PRIAM: Subtilisin; SPTR: peptidase S8; PFAM: Subtilase family YP_004170038.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933: IPR011650; KEGG: tro:trd_1045 deacetylase; PFAM: Peptidase M20; Peptidase M20, dimerisation; SPTR: Deacetylase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain YP_004170039.1 COGs: COG5637 integral membrane protein; InterPro IPR005031; KEGG: dge:Dgeo_0114 cyclase/dehydrase; PFAM: Streptomyces cyclase/dehydrase; SPTR: Cyclase/dehydrase; PFAM: Polyketide cyclase / dehydrase and lipid transport YP_004170040.1 COGs: COG0725 ABC-type molybdate transport system periplasmic component; InterPro IPR005950: IPR006059; KEGG: dge:Dgeo_2499 molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: ABC-type molybdate transport system, periplasmic component; TIGRFAM: Molybdenum ABC transporter, periplasmic binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein YP_004170041.1 COGs: COG0555 ABC-type sulfate transport system permease component; InterPro IPR006469: IPR011867: IPR000515; KEGG: dra:DR_A0168 molybdenum ABC transporter, permease, PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Molybdenum ABC transporter, permease, ; TIGRFAM: NifC-like ABC-type porter; Molybdate ABC transporter, permease; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: molybdate ABC transporter, permease; NifC-like ABC-type porter YP_004170042.1 KEGG: dge:Dgeo_1560 S-layer-like protein array-related protein; SPTR: S-layer-like protein array-related protein YP_004170043.1 COGs: COG2720 Uncharacterized vancomycin resistance protein; InterPro IPR007391; KEGG: ddr:Deide_02900 vancomycin resistance (VanW) protein, precursor; PFAM: Vancomycin resistance VanW; SPTR: vancomycin resistance (VanW) protein,; PFAM: VanW like protein YP_004170044.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: ddr:Deide_02910 ribosomal protein N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: ribosomal protein N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004170045.1 KEGG: bmr:BMI_II170 outer membrane autotransporter; SPTR: Outer membrane autotransporter YP_004170046.1 COGs: COG0548 Acetylglutamate kinase; InterPro IPR004662: IPR001048; KEGG: dge:Dgeo_0079 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: Acetylglutamate kinase; SPTR: Acetylglutamate/acetylaminoadipate kinase; TIGRFAM: Acetylglutamate kinase; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase YP_004170047.1 InterPro IPR000182; KEGG: dge:Dgeo_0078 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004170048.1 COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269; KEGG: dge:Dgeo_0077 dihydrouridine synthase, DuS; PFAM: tRNA-dihydrouridine synthase; SPTR: Dihydrouridine synthase, DuS; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: TIM-barrel protein, nifR3 family YP_004170049.1 InterPro IPR002934; KEGG: ttr:Tter_0749 hypothetical protein; PFAM: Nucleotidyl transferase domain; SPTR: DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase domain YP_004170050.1 KEGG: bpm:BURPS1710b_3723 phenol hydroxylase, SPTR: phenol hydroxylase YP_004170051.1 KEGG: cti:pRALTA_0157 retron-type reverse transcriptase, RNA-directed DNA polymerase; SPTR: Retron-type reverse transcriptase, RNA-directed DNA polymerase YP_004170052.1 COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: dge:Dgeo_0423 esterase; PFAM: esterase; SPTR: Ferric enterobactin esterase-related protein, alpha-beta hydrolase superfamily; PFAM: esterase YP_004170053.1 KEGG: dge:Dgeo_0422 hypothetical protein; SPTR: Peptidase C39 related protein YP_004170054.1 KEGG: dge:Dgeo_0421 hypothetical protein; SPTR: Zn-finger containing protein YP_004170055.1 COGs: COG2059 Chromate transport protein ChrA; InterPro IPR014047: IPR003370; KEGG: dia:Dtpsy_1844 chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; SPTR: Chromate transporter, chromate ion transporter (CHR) family; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family YP_004170056.1 InterPro IPR019734: IPR013105; KEGG: dra:DR_0121 hypothetical protein; PFAM: Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat YP_004170057.1 COGs: COG1316 Transcriptional regulator; InterPro IPR004474; KEGG: dge:Dgeo_1232 cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator; SPTR: Cell envelope-related transcriptional attenuator; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain YP_004170058.1 InterPro IPR000182; KEGG: mrb:Mrub_0058 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004170059.1 InterPro IPR000182; KEGG: ddr:Deide_19900 N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004170060.1 InterPro IPR000182; KEGG: dge:Dgeo_0369 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004170061.1 COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: dge:Dgeo_0368 LmbE-like protein protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: LmbE-like protein protein; PFAM: GlcNAc-PI de-N-acetylase YP_004170062.1 KEGG: dra:DR_0069 hypothetical protein; SPTR: uncharacterized protein YP_004170063.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: dge:Dgeo_1811 ABC transporter related; PFAM: ABC transporter-like; PRIAM: monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type transport system, ATPase component; PFAM: ABC transporter YP_004170064.1 KEGG: dge:Dgeo_1812 ABC-2 type transport system permease; SPTR: ABC-type transport system, permease component YP_004170065.1 InterPro IPR018660; KEGG: dge:Dgeo_0544 hypothetical protein; PFAM: Protein of unknown function DUF2091, periplasmic; SPTR: Predicted periplasmic protein; PFAM: Membrane-bound lysozyme-inhibitor of c-type lysozyme YP_004170066.1 InterPro IPR001159; KEGG: ddr:Deide_03100 hypothetical protein; PFAM: Double-stranded RNA-binding; SMART: Double-stranded RNA-binding; SPTR: uncharacterized protein; PFAM: Double-stranded RNA binding motif YP_004170067.1 COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR006402: IPR005834; KEGG: dge:Dgeo_1893 HAD family hydrolase; PFAM: haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase subfamily IA; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED YP_004170068.1 COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; HAMAP: Uncharacterised protein family UPF0102; InterPro IPR003509; KEGG: dge:Dgeo_1894 hypothetical protein; PFAM: Uncharacterised protein family UPF0102; SPTR: UPF0102 protein Dgeo_1894; TIGRFAM: Uncharacterised protein family UPF0102; PFAM: Uncharacterised protein family UPF0102; TIGRFAM: conserved hypothetical protein TIGR00252 YP_004170069.1 COGs: COG2847 conserved hypothetical protein; InterPro IPR007410; KEGG: dra:DR_1885 hypothetical protein; PFAM: DR1885-like metal-binding protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF461) YP_004170070.1 KEGG: nfi:NFIA_091580 GNAT family acetyltransferase, SPTR: Predicted protein YP_004170071.1 KEGG: ddr:Deide_16650 hypothetical protein; SPTR: uncharacterized protein YP_004170072.1 COGs: COG0717 Deoxycytidine deaminase; HAMAP: Deoxycytidine triphosphate deaminase; InterPro IPR011962; KEGG: ddr:Deide_16640 deoxycytidine triphosphate deaminase; PRIAM: dCTP deaminase; SPTR: Deoxycytidine triphosphate deaminase; TIGRFAM: Deoxycytidine triphosphate deaminase; PFAM: dUTPase; TIGRFAM: deoxycytidine triphosphate deaminase YP_004170073.1 COGs: COG0622 phosphoesterase; InterPro IPR004843; KEGG: dge:Dgeo_1879 metallophosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_004170074.1 COGs: COG1159 GTPase; HAMAP: GTP-binding protein Era; InterPro IPR005662: IPR005225: IPR002917: IPR004044; KEGG: ddr:Deide_18500 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K homology, type 2; SPTR: GTP-binding protein era homolog; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; PFAM: GTPase of unknown function; KH domain; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain YP_004170075.1 KEGG: cnb:CNBC6330 hypothetical protein; SPTR: uncharacterized protein YP_004170076.1 InterPro IPR011701; KEGG: ddr:Deide_2p00630 sugar efflux transporter; membrane protein; PFAM: Major facilitator superfamily MFS-1; SPTR: sugar efflux transporter; membrane protein; PFAM: Major Facilitator Superfamily YP_004170077.1 COGs: COG0213 thymidine phosphorylase; InterPro IPR013102: IPR018090: IPR017459: IPR000312; KEGG: dge:Dgeo_2180 pyrimidine-nucleoside phosphorylase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; Pyrimidine nucleoside phosphorylase, C-terminal; PRIAM: Pyrimidine-nucleoside phosphorylase; SMART: Pyrimidine nucleoside phosphorylase, C-terminal; SPTR: Pyrimidine-nucleoside phosphorylase; TIGRFAM: Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic; PFAM: Glycosyl transferase family, a/b domain; Pyrimidine nucleoside phosphorylase C-terminal domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: pyrimidine-nucleoside phosphorylase YP_004170078.1 KEGG: dge:Dgeo_2178 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1049) YP_004170079.1 COGs: COG0777 Acetyl-CoA carboxylase beta subunit; HAMAP: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; InterPro IPR000438: IPR000022; KEGG: dge:Dgeo_2177 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: Carboxyl transferase; PRIAM: Acetyl-CoA carboxylase; SPTR: Acetyl-CoA carboxylase, carboxyl transferase, beta subunit; TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; PFAM: Carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit YP_004170080.1 COGs: COG0825 Acetyl-CoA carboxylase alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; InterPro IPR001095; KEGG: dge:Dgeo_2176 acetyl-CoA carboxylase carboxyltransferase subunit alpha; PFAM: Acetyl-CoA carboxylase, alpha subunit; PRIAM: Acetyl-CoA carboxylase; SPTR: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; PFAM: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit YP_004170081.1 KEGG: dra:DR_1272 hypothetical protein; SPTR: uncharacterized protein YP_004170082.1 InterPro IPR000415; KEGG: dge:Dgeo_1686 nitroreductase; PFAM: Nitroreductase-like; SPTR: Nitroreductase; PFAM: Nitroreductase family YP_004170083.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR023210; KEGG: ddr:Deide_07880 oxidoreductase; PFAM: NADP-dependent oxidoreductase domain; SPTR: oxidoreductase; PFAM: Aldo/keto reductase family YP_004170084.1 InterPro IPR014966; KEGG: tau:Tola_1309 FRG domain protein; PFAM: FRG domain; SMART: FRG domain; SPTR: FRG domain protein; PFAM: FRG domain YP_004170085.1 KEGG: tau:Tola_1310 hypothetical protein; SPTR: uncharacterized protein YP_004170086.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; KEGG: ddr:Deide_17826 resolvase, N terminal domain ( serine recombinase family, catalytic domain); PFAM: Resolvase, N-terminal; SMART: Resolvase, N-terminal; SPTR: resolvase, N terminal domain ( serine recombinase family, catalytic domain); manually curated; PFAM: Recombinase; Resolvase, N terminal domain YP_004170088.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107: IPR002104; KEGG: bao:BAMF_0884 tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: tyrosine recombinase xerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_004170089.1 COGs: COG1555 DNA uptake protein and related DNA-binding protein; InterPro IPR000445; KEGG: ddr:Deide_03861 competence protein ComEA; PFAM: Helix-hairpin-helix motif; SPTR: Competence protein ComEA; manually curated; PFAM: Helix-hairpin-helix motif YP_004170090.1 COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); InterPro IPR001279: IPR004797: IPR004477; KEGG: dge:Dgeo_1579 DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: Competence protein; Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2 YP_004170091.1 KEGG: ddr:Deide_1p00830 hypothetical protein; SPTR: uncharacterized protein YP_004170092.1 KEGG: nwa:Nwat_2097 AsmA family protein; SPTR: AsmA family protein YP_004170093.1 COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: dge:Dgeo_1003 nitroreductase; PFAM: Nitroreductase-like; SPTR: NAD(P)H-flavin oxidoreductase, nitroreductase family; PFAM: Nitroreductase family YP_004170094.1 KEGG: dra:DR_A0021 hypothetical protein; SPTR: uncharacterized protein YP_004170095.1 COGs: COG0621 2-methylthioadenine synthetase; HAMAP: ribosomal protein S12 methylthiotransferase RimO; InterProIPR005840: IPR006638: IPR005839: IPR013848: IPR 007197: IPR002792; KEGG: dge:Dgeo_0375 ribosomal protein S12 methylthiotransferase; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: ribosomal protein S12 methylthiotransferase rimO; TIGRFAM: ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme YliG, TIGR01125; RNA modification enzyme, MiaB family YP_004170096.1 KEGG: bcj:BCAM2766 hypothetical protein; SPTR: uncharacterized protein YP_004170097.1 KEGG: dge:Dgeo_0371 hypothetical protein; SPTR: Arginase family hydrolase YP_004170098.1 COGs: COG1738 conserved hypothetical protein; InterPro IPR003744; KEGG: dra:DR_0380 hypothetical protein; PFAM: Protein of unknown function DUF165; SPTR: uncharacterized protein; PFAM: Uncharacterized ACR, YhhQ family COG1738; TIGRFAM: conserved hypothetical integral membrane protein YP_004170099.1 KEGG: dge:Dgeo_0373 hypothetical protein; SPTR: uncharacterized protein YP_004170100.1 KEGG: cai:Caci_7238 major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1 YP_004170101.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: bao:BAMF_3295 hydroxyacylglutathione hydrolase glyoxalase II; Glx II; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: hydroxyacylglutathione hydrolase Glyoxalase II; Glx II; PFAM: Metallo-beta-lactamase superfamily YP_004170102.1 COGs: COG0320 lipoate synthase; HAMAP: lipoate synthase; InterPro IPR003698: IPR006638: IPR007197; KEGG: ddr:Deide_07210 lipoyl synthase; PFAM: Radical SAM; PRIAM: lipoyl synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: lipoyl synthase; TIGRFAM: lipoate synthase; PFAM: Radical SAM superfamily; TIGRFAM: lipoate synthase YP_004170103.1 COGs: COG0321 lipoate-protein ligase B; HAMAP: Octanoyltransferase; InterPro IPR000544: IPR004143; KEGG: ddr:Deide_07220 lipoate-protein ligase B (lipoyltransferase); PFAM: Biotin/lipoate A/B protein ligase; PRIAM: lipoyl(octanoyl) transferase; SPTR: Octanoyltransferase; TIGRFAM: Octanoyltransferase; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoate-protein ligase B YP_004170104.1 COGs: COG0335 ribosomal protein L19; HAMAP: ribosomal protein L19; InterPro IPR001857; KEGG: ddr:Deide_07240 50S ribosomal protein L19; PFAM: ribosomal protein L19; SPTR: 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type YP_004170105.1 COGs: COG4222 conserved hypothetical protein; InterPro IPR004129; KEGG: ddr:Deide_02100 glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase family YP_004170106.1 COGs: COG4420 membrane protein; KEGG: dra:DR_A0362 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1003) YP_004170107.1 COGs: COG0039 Malate/lactate dehydrogenase; HAMAP: Malate dehydrogenase; InterPro IPR010945: IPR011274: IPR001236: IPR022383; KEGG: dge:Dgeo_2161 malate dehydrogenase; PFAM: Lactate/malate dehydrogenase, N-terminal; Lactate/malate dehydrogenase, C-terminal; SPTR: Malate dehydrogenase; TIGRFAM: Malate dehydrogenase, NAD/NADP; Malate dehydrogenase, NAD-dependent, cytosolic; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase; malate dehydrogenase, NAD-dependent YP_004170108.1 COGs: COG2367 Beta-lactamase class A; KEGG: dra:DR_A0241 beta lactamase-related protein; SPTR: Beta lactamase-related protein YP_004170109.1 COGs: COG1989 Type II secretory pathway prepilin signal peptidase PulO and related peptidase; InterPro IPR010627: IPR000045; KEGG: dge:Dgeo_0374 peptidase A24A-like protein; PFAM: Peptidase A24A, N-terminal; Peptidase A24A, prepilin type IV; PRIAM: Prepilin peptidase; SPTR: Peptidase A24A-like protein; PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family YP_004170110.1 COGs: COG1418 HD superfamily hydrolase; InterPro IPR003607: IPR006674; KEGG: ddr:Deide_20390 HD superfamily hydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: HD superfamily hydrolase; PFAM: HD domain YP_004170111.1 InterPro IPR000620; KEGG: ddr:Deide_02340 hypothetical protein; PFAM: Drug/metabolite transporter; SPTR: uncharacterized protein; PFAM: EamA-like transporter family YP_004170112.1 COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003593: IPR003439: IPR000515; KEGG: dge:Dgeo_0111 ABC transporter related; PFAM: ABC transporter-like; Binding-protein-dependent transport systems inner membrane component; PRIAM: Polyamine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; PFAM: ABC transporter; Binding-protein-dependent transport system inner membrane component YP_004170114.1 KEGG: bts:Btus_0552 hypothetical protein; SPTR: Cytochrome c oxidase subunit 1 YP_004170115.1 COGs: COG1832 CoA-binding protein; InterPro IPR003781; KEGG: dge:Dgeo_1943 CoA-binding; PFAM: CoA-binding; SMART: CoA-binding; SPTR: CoA-binding protein YP_004170116.1 COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; HAMAP: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; InterPro IPR004639: IPR005814; KEGG: ddr:Deide_15910 glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III; PRIAM: Glutamate-1-semialdehyde 2,1-aminomutase; SPTR: Glutamate-1-semialdehyde 2,1-aminomutase; TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase YP_004170117.1 KEGG: ddr:Deide_16840 hypothetical protein; SPTR: uncharacterized protein YP_004170118.1 COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR003593: IPR012763: IPR003959; KEGG: ddr:Deide_01610 DNA polymerase III, subunits gamma and tau; PFAM: ATPase, AAA-type, core; PRIAM: DNA-directed DNA polymerase; SMART: ATPase, AAA+ type, core; SPTR: DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: DNA polymerase III, delta' subunit; DNA polymerase III, subunit gamma and tau YP_004170119.1 InterPro IPR013229; KEGG: ddr:Deide_20130 S-layer-like array protein, precursor; PFAM: PEGA; SPTR: S-layer-like array protein,; PFAM: PEGA domain YP_004170120.1 KEGG: ddr:Deide_22630 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF2382) YP_004170121.1 COGs: COG3861 conserved hypothetical protein; InterPro IPR011756: IPR007903: IPR019060; KEGG: ddr:Deide_22640 hypothetical protein; PFAM: Domain of unknown function DUF2382, C-terminal; PRC-barrel; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02271, C-terminal; PFAM: Domain of unknown function (DUF2382); PRC-barrel domain; TIGRFAM: conserved domain YP_004170122.1 COGs: COG3544 conserved hypothetical protein; InterPro IPR005183; KEGG: ddr:Deide_05480 hypothetical protein; PFAM: Domain of unknown function DUF305; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF305) YP_004170123.1 KEGG: dra:DR_0212 hypothetical protein; SPTR: uncharacterized protein YP_004170124.1 InterPro IPR000182; KEGG: ttr:Tter_2281 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004170125.1 KEGG: dge:Dgeo_0480 hypothetical protein; SPTR: uncharacterized protein YP_004170126.1 KEGG: sco:SCO1914 hypothetical protein; SPTR: uncharacterized protein YP_004170127.1 COGs: COG0486 GTPase; HAMAP: tRNA modification GTPase TrmE; InterPro IPR004520: IPR005225: IPR018948: IPR002917; KEGG: ddr:Deide_05440 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related; SPTR: tRNA modification GTPase mnmE; TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain; tRNA modification GTPase TrmE YP_004170128.1 KEGG: dge:Dgeo_1585 hypothetical protein; SPTR: uncharacterized protein YP_004170129.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: ddr:Deide_03790 sugar ABC transporter, periplasmic component; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: sugar ABC transporter, periplasmic component; PFAM: Bacterial extracellular solute-binding protein YP_004170130.1 KEGG: mrb:Mrub_2573 hypothetical protein; SPTR: uncharacterized protein YP_004170131.1 InterPro IPR000182; KEGG: dge:Dgeo_2313 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004170132.1 KEGG: dge:Dgeo_1720 hypothetical protein; SPTR: Conserved hypothetical membrane protein YP_004170133.1 COGs: COG2041 Sulfite oxidase; InterPro IPR000572; KEGG: dge:Dgeo_1719 oxidoreductase, molybdopterin binding; PFAM: Oxidoreductase, molybdopterin-binding domain; SPTR: Oxidoreductase, molybdopterin binding; PFAM: Oxidoreductase molybdopterin binding domain YP_004170134.1 InterPro IPR003675; KEGG: ddr:Deide_09300 hypothetical protein; PFAM: Abortive infection protein; SPTR: uncharacterized protein; PFAM: CAAX amino terminal protease family YP_004170135.1 COGs: COG0284 Orotidine-5'-phosphate decarboxylase; HAMAP: Orotidine 5'-phosphate decarboxylase, type 2; InterPro IPR011995: IPR001754; KEGG: ddr:Deide_17030 orotidine-5 -phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase domain; PRIAM: Orotidine-5'-phosphate decarboxylase; SMART: Orotidine 5'-phosphate decarboxylase domain; SPTR: Orotidine 5'-phosphate decarboxylase; TIGRFAM: Orotidine 5'-phosphate decarboxylase, type 2; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2 YP_004170136.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: dge:Dgeo_1415 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein; SPTR: MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004170137.1 COGs: COG1307 conserved hypothetical protein; InterPro IPR003797; KEGG: ddr:Deide_10290 hypothetical protein; PFAM: DegV; SPTR: uncharacterized protein; TIGRFAM: DegV; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family YP_004170138.1 COGs: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; InterPro IPR006115; KEGG: dra:DR_0499 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; PRIAM: 3-hydroxyisobutyrate dehydrogenase; SPTR: 3-hydroxyisobutyrate dehydrogenase; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase YP_004170139.1 KEGG: dge:Dgeo_0634 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2721) YP_004170140.1 COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; HAMAP: DNA-directed RNA polymerase, subunit beta-prime; InterProIPR012754: IPR006592: IPR007080: IPR000722: IPR 007066: IPR007083: IPR007081; KEGG: dge:Dgeo_0635 DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5; SMART: RNA polymerase, N-terminal; SPTR: DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form YP_004170141.1 COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; HAMAP: DNA-directed RNA polymerase, beta subunit, bacterial-type; InterProIPR010243: IPR007644: IPR007642: IPR007645: IPR 019462: IPR007120: IPR007641; KEGG: dge:Dgeo_0636 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7; SPTR: DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit YP_004170142.1 COGs: COG0222 ribosomal protein L7/L12; HAMAP: ribosomal protein L7/L12; InterPro IPR000206: IPR013823; KEGG: ddr:Deide_06050 50S ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12, C-terminal; SPTR: 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12 YP_004170143.1 COGs: COG0244 ribosomal protein L10; HAMAP: ribosomal protein L10; InterPro IPR022973: IPR001790; KEGG: ddr:Deide_06060 50S ribosomal protein L10; PFAM: ribosomal protein L10/acidic P0; SPTR: 50S ribosomal protein L10; PFAM: ribosomal protein L10 YP_004170144.1 COGs: COG0081 ribosomal protein L1; InterPro IPR005878: IPR002143; KEGG: dge:Dgeo_0641 50S ribosomal protein L1; PFAM: ribosomal protein L1; SPTR: 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1, bacterial-type; PFAM: ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast YP_004170145.1 COGs: COG0080 ribosomal protein L11; InterPro IPR000911: IPR006519: IPR020784: IPR020783; KEGG: dra:DR_2046 50S ribosomal protein L11; PFAM: ribosomal protein L11, C-terminal domain; ribosomal protein L11, N-terminal domain; SMART: ribosomal protein L11; SPTR: 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11, bacterial-type; PFAM: ribosomal protein L11, RNA binding domain; ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11 YP_004170146.1 COGs: COG0250 Transcription antiterminator; InterPro IPR006645: IPR005824: IPR001062; KEGG: dge:Dgeo_0643 NusG antitermination factor; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; SMART: Transcription antitermination protein, NusG, N-terminal; KOW; SPTR: Transcription antitermination protein nusG; TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG YP_004170147.1 InterPro IPR005807: IPR001901; KEGG: ttj:TTHA0249 preprotein translocase subunit SecE; PFAM: Protein SecE/Sec61-gamma protein; SPTR: Protein translocase subunit secE; TIGRFAM: SecE subunit of protein translocation complex; PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial YP_004170148.1 HAMAP: ribosomal protein L33; InterPro IPR001705; KEGG: ddr:Deide_06110 50S ribosomal protein L33; PFAM: ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type YP_004170149.1 COGs: COG0050 GTPase - translation elongation factors; InterProIPR004541: IPR005225: IPR000795: IPR004161: IPR 004160; KEGG: ddr:Deide_18970 elongation factor Tu; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal; SPTR: Elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU YP_004170150.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593: IPR001140: IPR003439; KEGG: dra:DR_2051 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein, MDR family; PFAM: ABC transporter transmembrane region; ABC transporter YP_004170151.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593: IPR001140: IPR003439; KEGG: dge:Dgeo_0648 ABC transporter related; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type transport system, ATPase and permease component; PFAM: ABC transporter transmembrane region; ABC transporter YP_004170152.1 InterPro IPR004942; KEGG: dge:Dgeo_1020 hypothetical protein; PFAM: Dynein light chain-related; SMART: Dynein light chain-related; SPTR: Roadblock/LC7; PFAM: Roadblock/LC7 domain YP_004170153.1 InterPro IPR004942; KEGG: dge:Dgeo_1019 hypothetical protein; PFAM: Dynein light chain-related; SMART: Dynein light chain-related; SPTR: Roadblock/LC7; PFAM: Roadblock/LC7 domain YP_004170154.1 COGs: COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid; InterPro IPR004942; KEGG: dge:Dgeo_1018 roadblock/LC7 domain-contain protein; PFAM: Dynein light chain-related; SMART: Dynein light chain-related; SPTR: Roadblock/LC7; PFAM: Roadblock/LC7 domain YP_004170155.1 COGs: COG0353 Recombinational DNA repair protein (RecF pathway); HAMAP: RecR protein; InterPro IPR000093: IPR003583: IPR006171: IPR015967; KEGG: ddr:Deide_06340 recombination protein RecR; PFAM: Toprim domain; Zinc finger C4-type, RecR; SMART: Toprim domain; Helix-hairpin-helix DNA-binding motif, class 1; SPTR: Recombination protein recR; TIGRFAM: RecR protein; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR YP_004170156.1 COGs: COG0718 conserved hypothetical protein; HAMAP: Uncharacterised protein family UPF0133; InterPro IPR004401; KEGG: dge:Dgeo_1512 hypothetical protein; PFAM: Uncharacterised protein family UPF0133; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0133; PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family YP_004170157.1 KEGG: lbu:LBUL_0036 integral membrane protein; SPTR: Predicted integral membrane protein YP_004170158.1 KEGG: bpt:Bpet3174 ATP-dependent protease, ATPase subunit YP_004170159.1 COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR003607: IPR006261: IPR006674; KEGG: aba:Acid345_0225 deoxyguanosinetriphosphate triphosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; manually curated; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase YP_004170160.1 KEGG: met:M446_5113 hypothetical protein; SPTR: uncharacterized protein YP_004170161.1 KEGG: pop:POPTR_717292 hypothetical protein; SPTR: Predicted protein YP_004170162.1 COGs: COG3727 DNA G:T-mismatch repair endonuclease; InterPro IPR004603: IPR007569; KEGG: dev:DhcVS_255 Vsr domain protein T:G mismatch repair endonuclease; PFAM: DNA mismatch endonuclease vsr; Domain of unknown function DUF559; SPTR: Vsr domain protein T:G mismatch repair endonuclease; TIGRFAM: DNA mismatch endonuclease vsr; PFAM: DNA mismatch endonuclease Vsr; Protein of unknown function (DUF559); TIGRFAM: DNA mismatch endonuclease Vsr YP_004170163.1 COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: ajs:Ajs_4252 DNA-cytosine methyltransferase; PFAM: C-5 cytosine methyltransferase; PRIAM: DNA (cytosine-5-)-methyltransferase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: C-5 cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm) YP_004170164.1 KEGG: mau:Micau_1748 type II site-specific deoxyribonuclease; SPTR: regulatory protein; PFAM: Restriction endonuclease NaeI YP_004170165.1 COGs: COG0358 DNA primase; InterPro IPR015330; KEGG: dra:DR_0530 hypothetical protein; SMART: DNA primase/polymerase, bifunctional, N-terminal; SPTR: uncharacterized protein; PFAM: Bifunctional DNA primase/polymerase, N-terminal YP_004170166.1 COGs: COG0305 Replicative DNA helicase; InterPro IPR007694; KEGG: rpf:Rpic12D_2278 replicative DNA helicase; PFAM: DNA helicase, DnaB-like, C-terminal; SPTR: DnaB domain protein helicase domain protein; PFAM: DnaB-like helicase C terminal domain YP_004170167.1 KEGG: smd:Smed_1664 hypothetical protein; SPTR: uncharacterized protein YP_004170168.1 KEGG: mrd:Mrad2831_6356 hypothetical protein; SPTR: uncharacterized protein YP_004170169.1 KEGG: cfa:487513 spectrin, beta, non-erythrocytic 5; SPTR: Polyketide synthase YP_004170170.1 KEGG: nth:Nther_0389 hypothetical protein; SPTR: uncharacterized protein YP_004170171.1 KEGG: azl:AZL_026490 hypothetical protein; SPTR: uncharacterized protein YP_004170173.1 KEGG: lch:Lcho_2514 chromosome segregation protein SMC; SPTR: Chromosome segregation protein SMC YP_004170174.1 KEGG: mjl:Mjls_3158 phosphoribosyl-ATP pyrophosphatase; SPTR: Phosphoribosyl-ATP pyrophosphatase YP_004170175.1 KEGG: nfa:nfa2830 hypothetical protein; SPTR: uncharacterized protein YP_004170176.1 KEGG: mno:Mnod_8475 major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1 YP_004170177.1 KEGG: rsq:Rsph17025_3422 hypothetical protein; SPTR: uncharacterized protein YP_004170178.1 KEGG: afm:AFUA_1G00850 hypothetical protein; SPTR: uncharacterized protein YP_004170179.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: rxy:Rxyl_2219 phage integrase; PFAM: Integrase, catalytic core, phage; SPTR: Phage integrase; PFAM: Phage integrase family YP_004170180.1 COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: dge:Dgeo_1506 glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; SPTR: Glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase family YP_004170181.1 COGs: COG2388 acetyltransferase; KEGG: ddr:Deide_10333 acetyltransferase; SPTR: acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004170182.1 COGs: COG0441 Threonyl-tRNA synthetase; InterProIPR012947: IPR002320: IPR004095: IPR002314: IPR 004154; KEGG: ddr:Deide_06410 threonyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; SMART: Threonyl/alanyl tRNA synthetase, SAD; SPTR: Threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase YP_004170183.1 InterPro IPR000620; KEGG: dge:Dgeo_0313 hypothetical protein; PFAM: Drug/metabolite transporter; SPTR: Permease of the drug/metabolite transporter (DMT) superfamily; PFAM: EamA-like transporter family YP_004170184.1 COGs: COG1408 phosphohydrolase; InterPro IPR004843; KEGG: ddr:Deide_3p01711 phosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: phosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_004170185.1 COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764; KEGG: msv:Mesil_0282 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 3, N-terminal; SPTR: Beta-N-acetylhexosaminidase; PFAM: Glycosyl hydrolase family 3 N terminal domain YP_004170186.1 InterPro IPR000182; KEGG: dge:Dgeo_1160 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004170187.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: msv:Mesil_0286 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004170188.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: msv:Mesil_0285 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004170189.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: msv:Mesil_0284 extracellular solute-binding protein family 1; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: Extracellular solute-binding protein family 1; PFAM: Bacterial extracellular solute-binding protein YP_004170190.1 COGs: COG1737 Transcriptional regulators; InterPro IPR000281: IPR001347; KEGG: dge:Dgeo_2619 RpiR family transcriptional regulator; PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); SPTR: Transcriptional regulator, RpiR family; PFAM: Helix-turn-helix domain, rpiR family; SIS domain YP_004170191.1 COGs: COG3325 Chitinase; InterPro IPR011583: IPR001223; KEGG: sml:Smlt0682 chitinase A; PFAM: Glycoside hydrolase, family 18, catalytic domain; PRIAM: Chitinase; SMART: Chitinase II; SPTR: Chitinase A; PFAM: Glycosyl hydrolases family 18 YP_004170192.1 COGs: COG2199 FOG: GGDEF domain; InterProIPR000014: IPR001610: IPR003018: IPR000160: IPR 013767: IPR013655; KEGG: ddr:Deide_3p00170 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; PAS fold; GAF; PAS fold-3; SMART: Diguanylate cyclase, predicted; PAS; PAC motif; GAF; SPTR: diguanylate cyclase; TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: GAF domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain YP_004170193.1 COGs: COG1408 phosphohydrolase; InterPro IPR006311: IPR004843; KEGG: dge:Dgeo_0219 twin-arginine translocation pathway signal; PFAM: Metallo-dependent phosphatase; SPTR: Calcineurin like phosphoesterase; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004170194.1 COGs: COG1574 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR013108; KEGG: ddr:Deide_19250 amidohydrolase; PFAM: Amidohydrolase 3; SPTR: amidohydrolase; PFAM: Amidohydrolase family YP_004170195.1 COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: ddr:Deide_19500 multiple antibiotic resistance (MarC)-related proteins; membrane protein; PFAM: Multiple antibiotic resistance (MarC)-related; SPTR: multiple antibiotic resistance (MarC)-related proteins; membrane protein; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family YP_004170196.1 COGs: COG1403 Restriction endonuclease; InterPro IPR003615: IPR002711; KEGG: dge:Dgeo_2144 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease; PFAM: HNH endonuclease YP_004170197.1 COGs: COG1056 Nicotinamide mononucleotide adenylyltransferase; InterPro IPR004821: IPR004820: IPR000086; KEGG: ddr:Deide_20050 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; PFAM: NUDIX hydrolase domain; Cytidylyltransferase; SPTR: bifunctional protein: NMN adenylyltransferase/nudix hydrolase; TIGRFAM: Cytidyltransferase-related; PFAM: Cytidylyltransferase; NUDIX domain; TIGRFAM: cytidyltransferase-related domain YP_004170198.1 COGs: COG1397 ADP-ribosylglycohydrolase; InterPro IPR005502; KEGG: mau:Micau_1263 ADP-ribosylation/crystallin J1; PFAM: ADP-ribosylation/Crystallin J1; SPTR: ADP-ribosylglycohydrolase; PFAM: ADP-ribosylglycohydrolase YP_004170199.1 COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR015977; KEGG: dra:DR_0294 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; PRIAM: Nicotinamide phosphoribosyltransferase; SPTR: Pre-B cell enhancing factor-related protein; PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family YP_004170200.1 KEGG: scl:sce4731 hypothetical protein; SPTR: uncharacterized protein YP_004170201.1 KEGG: cfl:Cfla_1442 nicotinamide mononucleotide transporter PnuC; SPTR: Nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC YP_004170202.1 COGs: COG3172 ATPase/kinase involved in NAD metabolism; InterPro IPR004821; KEGG: pmy:Pmen_1542 NAD metabolism ATPase/kinase-like protein; SPTR: ATPase/kinase involved in NAD metabolism-like protein; TIGRFAM: Cytidyltransferase-related; TIGRFAM: nicotinamide-nucleotide adenylyltransferase, NadR type; cytidyltransferase-related domain YP_004170203.1 KEGG: dra:DR_1091 hypothetical protein; SPTR: uncharacterized protein YP_004170204.1 InterPro IPR000182; KEGG: dra:DR_1918 aminoglycoside acetyltransferase (6') type I; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Aminoglycoside acetyltransferase (6') type I; PFAM: Acetyltransferase (GNAT) family YP_004170205.1 COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003593: IPR003439; KEGG: dge:Dgeo_1938 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type polyamine transport system, ATPase component; PFAM: ABC transporter YP_004170206.1 COGs: COG1178 ABC-type Fe3+ transport system permease component; InterPro IPR000515; KEGG: dra:DR_2488 ABC transporter permease; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter, permease, CysTW family; PFAM: Binding-protein-dependent transport system inner membrane component YP_004170207.1 COGs: COG4143 ABC-type thiamine transport system periplasmic component; InterPro IPR005948: IPR006059; KEGG: ddr:Deide_15830 thiamine ABC transporter, periplasmic component; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: ABC transporter, periplasmic substrate-binding protein, solute-binding family 1; TIGRFAM: Thiamine ABC transporter periplasmic binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: ABC transporter periplasmic binding protein, thiB subfamily YP_004170208.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: dge:Dgeo_1930 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; PFAM: NUDIX domain YP_004170209.1 COGs: COG1233 phytoene dehydrogenase and related protein; InterPro IPR002937; KEGG: dge:Dgeo_1779 amine oxidase; PFAM: Amine oxidase; SPTR: Amine oxidase; PFAM: Flavin containing amine oxidoreductase YP_004170210.1 KEGG: dge:Dgeo_1780 hypothetical protein; SPTR: Glyoxalase I/dioxygenase superfamily protein YP_004170211.1 COGs: COG2761 dithiol-disulfide isomerase involved in polyketide biosynthesis; InterPro IPR001853; KEGG: gau:GAU_2844 oxidoreductase; PFAM: DSBA-like thioredoxin domain; SPTR: oxidoreductase; PFAM: DSBA-like thioredoxin domain YP_004170212.1 COGs: COG0788 formyltetrahydrofolate hydrolase; InterPro IPR004810: IPR002912: IPR002376; KEGG: dge:Dgeo_1488 formyltetrahydrofolate deformylase; PFAM: formyl transferase, N-terminal; Amino acid-binding ACT; PRIAM: formyltetrahydrofolate deformylase; SPTR: formyltetrahydrofolate deformylase; TIGRFAM: formyltetrahydrofolate deformylase; PFAM: ACT domain; formyl transferase; TIGRFAM: formyltetrahydrofolate deformylase YP_004170213.1 COGs: COG0580 Glycerol uptake facilitator and related permease (Major Intrinsic Protein Family); InterPro IPR000425; KEGG: dge:Dgeo_0516 major intrinsic protein; PFAM: Major intrinsic protein; SPTR: Transporter, MIP/aquaporin family; PFAM: Major intrinsic protein YP_004170214.1 COGs: COG2309 Leucyl aminopeptidase (aminopeptidase T); InterPro IPR000787; KEGG: ddr:Deide_09610 aminopeptidase; PFAM: Peptidase M29, aminopeptidase II; SPTR: aminopeptidase; PFAM: Thermophilic metalloprotease (M29) YP_004170215.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660: IPR003661: IPR003594; KEGG: mrb:Mrub_0032 histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SPTR: histidine kinase; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004170216.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: dge:Dgeo_1522 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004170217.1 InterPro IPR003423; KEGG: dge:Dgeo_1523 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein YP_004170218.1 InterPro IPR003423; KEGG: dge:Dgeo_1524 hypothetical protein; PFAM: Outer membrane efflux protein; SPTR: uncharacterized protein; PFAM: Outer membrane efflux protein YP_004170219.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: msv:Mesil_1062 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004170220.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: mrb:Mrub_2972 ABC transporter; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; PFAM: ABC transporter YP_004170221.1 COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: msv:Mesil_1060 protein of unknown function DUF214; PFAM: Domain of unknown function DUF214, ABC transporter permease; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004170222.1 KEGG: msv:Mesil_1059 hypothetical protein; SPTR: uncharacterized protein YP_004170223.1 COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR001258; KEGG: ddr:Deide_08970 L-sorbosone dehydrogenase; PFAM: NHL repeat; SPTR: L-sorbosone dehydrogenase; PFAM: Glucose / Sorbosone dehydrogenase; Membrane bound L-sorbosone dehydrogenase YP_004170224.1 COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase; InterPro IPR006264: IPR001986; KEGG: dra:DR_1096 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: Enolpyruvate transferase domain; PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase YP_004170225.1 KEGG: pan:PODANSg3174 hypothetical protein; SPTR: uncharacterized protein YP_004170226.1 KEGG: dge:Dgeo_1000 hypothetical protein; SPTR: uncharacterized protein YP_004170227.1 COGs: COG1748 Saccharopine dehydrogenase and related protein; InterPro IPR005097; KEGG: dge:Dgeo_0999 saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase / homospermidine synthase; SPTR: Saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase YP_004170228.1 KEGG: dma:DMR_06180 chloride channel protein; SPTR: uncharacterized protein YP_004170229.1 InterPro IPR004638: IPR011701; KEGG: rxy:Rxyl_0617 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily YP_004170230.1 COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: cts:Ctha_2502 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; PFAM: MarR family YP_004170231.1 COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR022643: IPR005730; KEGG: dge:Dgeo_1317 carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, C-terminal; SPTR: Carboxynorspermidine decarboxylase; TIGRFAM: Carboxynorspermidine decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; TIGRFAM: carboxynorspermidine decarboxylase YP_004170232.1 COGs: COG3265 Gluconate kinase; InterPro IPR000623: IPR006001; KEGG: tra:Trad_0658 carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; PRIAM: Gluconokinase; SPTR: Carbohydrate kinase, thermoresistant glucokinase family; TIGRFAM: Carbohydrate kinase, thermoresistant glucokinase; PFAM: shikimate kinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family YP_004170233.1 COGs: COG5479 Uncharacterized protein potentially involved in peptidoglycan biosynthesis; KEGG: dge:Dgeo_1316 S-layer-like protein array-related protein; SPTR: S-layer-like protein array-related protein YP_004170234.1 KEGG: dge:Dgeo_0997 hypothetical protein; SPTR: uncharacterized protein YP_004170235.1 KEGG: mbn:Mboo_0284 LVIVD repeat-containing protein YP_004170236.1 COGs: COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; InterPro IPR001360; KEGG: pzu:PHZ_p0098 glycoside hydrolase, family 1; PFAM: Glycoside hydrolase, family 1; SPTR: uncharacterized protein; PFAM: Glycosyl hydrolase family 1 YP_004170237.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198: IPR020842; KEGG: pzu:PHZ_p0079 oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-ACP reductase; SMART: Polyketide synthase/Fatty acid synthase, KR; SPTR: Oxidoreductase; PFAM: short chain dehydrogenase YP_004170238.1 KEGG: dat:HRM2_p00720 LinF; lincosamide nucleotidyltransferase LinF; SPTR: DNA polymerase beta domain protein region YP_004170239.1 COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795: IPR004161: IPR005517: IPR000640: IPR 005225; KEGG: dge:Dgeo_1453 elongation factor G; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SPTR: Elongation factor EF-G; TIGRFAM: Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_004170240.1 KEGG: hau:Haur_2139 phosphotransferase (aminonucleoside antibiotic resistance); SPTR: Phosphotransferase (Aminonucleoside antibiotic resistance) YP_004170241.1 COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022; KEGG: dge:Dgeo_0489 carboxyl transferase; PFAM: Carboxyl transferase; PRIAM: Propionyl-CoA carboxylase; SPTR: Carboxyl transferase; PFAM: Carboxyl transferase domain YP_004170242.1 COGs: COG3214 conserved hypothetical protein; InterPro IPR009351; KEGG: dge:Dgeo_1661 hypothetical protein; PFAM: Protein of unknown function DUF1006; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1006) YP_004170243.1 InterPro IPR002575: IPR015897; KEGG: dge:Dgeo_1662 aminoglycoside phosphotransferase; PFAM: Aminoglycoside phosphotransferase; SMART: CHK kinase-like; SPTR: Aminoglycoside phosphotransferase; PFAM: Phosphotransferase enzyme family YP_004170244.1 KEGG: dvi:Dvir_GJ18213 GJ18213 gene product from transcript GJ18213-RA; SPTR: GJ18213 YP_004170245.1 COGs: COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase; HAMAP: isopentenyl-diphosphate delta-isomerase, FMN-dependent; InterPro IPR000262: IPR011179; KEGG: dge:Dgeo_1381 isopentenyl pyrophosphate isomerase; PFAM: FMN-dependent dehydrogenase; PRIAM: isopentenyl-diphosphate Delta-isomerase; SPTR: isopentenyl-diphosphate delta-isomerase; TIGRFAM: isopentenyl-diphosphate delta-isomerase, FMN-dependent; PFAM: FMN-dependent dehydrogenase; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 2 YP_004170246.1 KEGG: dac:Daci_0764 hypothetical protein; SPTR: uncharacterized protein YP_004170247.1 InterPro IPR002035; KEGG: fra:Francci3_2918 von Willebrand factor, type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: von Willebrand factor type A; PFAM: von Willebrand factor type A domain YP_004170248.1 KEGG: fra:Francci3_2917 hypothetical protein; SPTR: uncharacterized protein YP_004170249.1 COGs: COG2832 conserved hypothetical protein; InterPro IPR007401; KEGG: dra:DR_1457 hypothetical protein; PFAM: Protein of unknown function DUF454; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF454) YP_004170250.1 COGs: COG2315 conserved hypothetical protein; InterPro IPR007351; KEGG: ddr:Deide_19290 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF419) YP_004170251.1 KEGG: dge:Dgeo_0400 hypothetical protein; SPTR: uncharacterized protein YP_004170252.1 COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); HAMAP: Polyribonucleotide nucleotidyltransferase; InterProIPR001247: IPR015847: IPR015848: IPR018111: IPR 003029: IPR004087: IPR022967: IPR012162; KEGG: dge:Dgeo_0401 polynucleotide phosphorylase/polyadenylase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K homology, type 1, subgroup; ribosomal protein S1, RNA-binding domain; PRIAM: Polyribonucleotide nucleotidyltransferase; SMART: RNA-binding domain, S1; K homology; SPTR: Polyribonucleotide nucleotidyltransferase; TIGRFAM: Polyribonucleotide nucleotidyltransferase; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; Polyribonucleotide nucleotidyltransferase, RNA binding domain; TIGRFAM: polyribonucleotide nucleotidyltransferase YP_004170253.1 COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR000109: IPR005279; KEGG: mau:Micau_3134 amino acid/peptide transporter; PFAM: Oligopeptide transporter; SPTR: Amino acid/peptide transporter; TIGRFAM: Amino acid/peptide transporter; PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial YP_004170254.1 COGs: COG4281 Acyl-CoA-binding protein; InterPro IPR000582; KEGG: dge:Dgeo_0394 acyl-CoA-binding protein; PFAM: Acyl-CoA-binding protein, ACBP; SPTR: Acyl-coA-binding protein, ACBP; PFAM: Acyl CoA binding protein YP_004170255.1 COGs: COG2856 Zn peptidase; InterPro IPR010359; KEGG: dge:Dgeo_0395 hypothetical protein; PFAM: Protein of unknown function DUF955; SPTR: Zn dependent hydrolase fused to HTH domain, IrrE ortholog; PFAM: Domain of unknown function (DUF955) YP_004170256.1 COGs: COG0294 Dihydropteroate synthase; InterPro IPR000489: IPR006390; KEGG: dge:Dgeo_0396 dihydropteroate synthase; PFAM: Pterin-binding; PRIAM: Dihydropteroate synthase; SPTR: Dihydropteroate synthase; TIGRFAM: Dihydropteroate synthase; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase YP_004170257.1 COGs: COG1539 Dihydroneopterin aldolase; InterPro IPR006157: IPR006156; KEGG: ddr:Deide_03050 dihydroneopterin aldolase, (DhnA); PFAM: Dihydroneopterin aldolase; SMART: Dihydroneopterin aldolase; SPTR: dihydroneopterin aldolase, (DHNA); TIGRFAM: Dihydroneopterin aldolase subgroup; Dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; FolB domain YP_004170258.1 COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: dge:Dgeo_0398 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PRIAM:2-amino-4-hydroxy-6-hydroxymethyldihydropteri dinediphosphokinase; SPTR:2-amino-4-hydroxy-6-hydroxymethyldihydropterid inepyrophosphokinase; TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_004170259.1 COGs: COG2815 conserved hypothetical protein; InterPro IPR005543; KEGG: ddr:Deide_06750 PASTA domain protein; PFAM: PASTA; SMART: PASTA; SPTR: PASTA domain protein; PFAM: PASTA domain YP_004170260.1 COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192; KEGG: ddr:Deide_06740 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: cysteine desulfurase; PFAM: Aminotransferase class-V YP_004170262.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: dge:Dgeo_0579 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004170263.1 COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); InterPro IPR005481: IPR005479: IPR005480: IPR006275; KEGG: ddr:Deide_00700 carbamoyl phosphate synthase large subunit; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Carbamoyl-phosphate synthetase, large subunit, oligomerisation; PRIAM: Carbamoyl-phosphate synthase (ammonia); SPTR: Carbamoyl-phosphate synthase large chain; TIGRFAM: Carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit YP_004170264.1 COGs: COG0137 Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; InterPro IPR001518; KEGG: ddr:Deide_00720 argininosuccinate synthase; PFAM: Argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase YP_004170265.1 InterPro IPR000182; KEGG: ddr:Deide_00750 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004170266.1 COGs: COG0165 Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; InterPro IPR022761: IPR009049; KEGG: dge:Dgeo_2065 argininosuccinate lyase; PFAM: Lyase 1, N-terminal; PRIAM: Argininosuccinate lyase; SPTR: Argininosuccinate lyase; TIGRFAM: Argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase YP_004170267.1 COGs: COG1246 N-acetylglutamate synthase and related acetyltransferase; InterPro IPR000182; KEGG: dge:Dgeo_2063 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004170268.1 COGs: COG1246 N-acetylglutamate synthase and related acetyltransferase; InterPro IPR000182; KEGG: dge:Dgeo_2061 acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004170269.1 COGs: COG0505 Carbamoylphosphate synthase small subunit; InterPro IPR002474: IPR000991: IPR006274; KEGG: dge:Dgeo_2060 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: Carbamoyl-phosphate synthase (glutamine-hydrolyzing); SPTR: Carbamoyl-phosphate synthase small chain; TIGRFAM: Carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit YP_004170270.1 COGs: COG4719 conserved hypothetical protein; KEGG: ddr:Deide_01990 hypothetical protein; SPTR: uncharacterized protein YP_004170271.1 InterPro IPR001434; KEGG: dra:DR_0685 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain YP_004170272.1 InterPro IPR001434; KEGG: dra:DR_0686 hypothetical protein; PFAM: Domain of unknown function DUF11; SPTR: uncharacterized protein; TIGRFAM: Domain of unknown function DUF11; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain YP_004170273.1 InterPro IPR001434; KEGG: dra:DR_0687 hypothetical protein; PFAM: Domain of unknown function DUF11; SPTR: uncharacterized protein; TIGRFAM: Domain of unknown function DUF11; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain YP_004170274.1 InterPro IPR001434; KEGG: dra:DR_0143 hypothetical protein; PFAM: Domain of unknown function DUF11; SPTR: Conserved repeat domain protein; TIGRFAM: Domain of unknown function DUF11; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain YP_004170275.1 COGs: COG2302 conserved hypothetical protein contains S4-like domain; InterPro IPR002942; KEGG: dge:Dgeo_2020 RNA-binding S4; PFAM: RNA-binding S4; SPTR: RNA-binding S4; PFAM: S4 domain YP_004170276.1 COGs: COG0466 ATP-dependent Lon protease; InterProIPR003111: IPR003959: IPR008269: IPR003593: IPR 004815; KEGG: dge:Dgeo_0427 ATP-dependent protease La; PFAM: Peptidase S16, Lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core; PRIAM: Endopeptidase La; SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; SPTR: ATP-dependent protease La; TIGRFAM: Peptidase S16, ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La YP_004170277.1 COGs: COG1678 transcriptional regulator protein; HAMAP: Protein of unknown function DUF179; InterPro IPR003774; KEGG: ddr:Deide_05660 hypothetical protein; PFAM: Protein of unknown function DUF179; SPTR: uncharacterized protein; PFAM: Uncharacterized ACR, COG1678 YP_004170278.1 COGs: COG2200 FOG: EAL domain; InterProIPR013656: IPR013767: IPR000160: IPR001633: IPR 000014; KEGG: dra:DR_0750 sensory box/GGDEF family protein; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-4; PAS fold; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; SPTR: Sensory box/GGDEF family protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain YP_004170279.1 COGs: COG0358 DNA primase; InterPro IPR002694: IPR013264: IPR006171: IPR006295; KEGG: dge:Dgeo_1910 DNA primase; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; SPTR: DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; TIGRFAM: DNA primase, catalytic core YP_004170280.1 COGs: COG2255 Holliday junction resolvasome helicase subunit; HAMAP: DNA helicase, Holliday junction RuvB type; InterProIPR008824: IPR003959: IPR008823: IPR003593: IPR 004605; KEGG: dge:Dgeo_0404 Holliday junction DNA helicase RuvB; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: DNA helicase, Holliday junction RuvB type; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit YP_004170281.1 COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782; KEGG: dge:Dgeo_0405 electron transport protein SCO1/SenC; PFAM: Copper chaperone SCO1/SenC; SPTR: Electron transport protein SCO1/SenC; PFAM: SCO1/SenC YP_004170282.1 COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883: IPR000298; KEGG: dge:Dgeo_0406 cytochrome c oxidase, subunit I; PFAM: Cytochrome c oxidase, subunit I; Cytochrome c oxidase, subunit III; SPTR: Cytochrome c oxidase, subunit I; PFAM: Cytochrome c oxidase subunit III; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, subunit I YP_004170283.1 COGs: COG1622 Heme/copper-type cytochrome/quinol oxidase subunit 2; InterPro IPR002429: IPR003088: IPR014222; KEGG: ddr:Deide_18320 cytochrome-c oxidase, subunit 2; membrane protein, precursor; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome c, class I; SPTR: cytochrome-c oxidase, subunit 2; membrane protein,; TIGRFAM: Cytochrome c oxidase, subunit II; PFAM: Cytochrome C oxidase subunit II, periplasmic domain; Cytochrome c; TIGRFAM: cytochrome c oxidase, subunit II YP_004170284.1 COGs: COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor); HAMAP: Protohaem IX farnesyltransferase; InterPro IPR000537: IPR006369; KEGG: dge:Dgeo_0408 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; SPTR: Protoheme IX farnesyltransferase; TIGRFAM: Protohaem IX farnesyltransferase; PFAM: UbiA prenyltransferase family; TIGRFAM: protoheme IX farnesyltransferase YP_004170285.1 COGs: COG1612 Uncharacterized protein required for cytochrome oxidase assembly; InterPro IPR003780; KEGG: ddr:Deide_18300 cytochrome c oxidase assembly factor; membrane protein; PFAM: Heme A synthase/Protoheme IX farnesyltransferase; SPTR: cytochrome c oxidase assembly factor; membrane protein; PFAM: Cytochrome oxidase assembly protein YP_004170286.1 COGs: COG2322 membrane protein; InterPro IPR007352; KEGG: dge:Dgeo_0410 hypothetical protein; PFAM: Protein of unknown function DUF420; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF420) YP_004170287.1 COGs: COG0413 Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; InterPro IPR003700; KEGG: dge:Dgeo_0411 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_004170288.1 InterPro IPR001440: IPR019734; KEGG: dge:Dgeo_2183 tetratricopeptide TPR_2; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat protein YP_004170289.1 COGs: COG0465 ATP-dependent Zn protease; InterProIPR011546: IPR003959: IPR000642: IPR003593: IPR 005936; KEGG: dge:Dgeo_2182 ATP-dependent metalloprotease FtsH; PFAM: ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; Peptidase M41; PRIAM: Microtubule-severing ATPase; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent metalloprotease FtsH; TIGRFAM: Peptidase M41, FtsH; PFAM: FtsH Extracellular; Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH YP_004170290.1 InterPro IPR000182; KEGG: ddr:Deide_04110 hypothetical protein; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: uncharacterized protein; manually curated; PFAM: Acetyltransferase (GNAT) family YP_004170291.1 COGs: COG2894 Septum formation inhibitor-activating ATPase; InterPro IPR002586: IPR010223; KEGG: dge:Dgeo_0376 septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Septum site-determining protein MinD, ATPase; TIGRFAM: Septum site-determining protein MinD; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: septum site-determining protein MinD YP_004170292.1 COGs: COG0851 Septum formation topological specificity factor; InterPro IPR005527; KEGG: ddr:Deide_21090 cell division topological specificity factor; PFAM: Septum formation topological specificity factor MinE; SPTR: Cell division topological specificity factor; TIGRFAM: Septum formation topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; TIGRFAM: cell division topological specificity factor MinE YP_004170293.1 COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: ddr:Deide_21080 rod shape-determining protein, precursor; PFAM: Cell cycle protein; SPTR: rod shape-determining protein,; PFAM: Cell cycle protein YP_004170294.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003439: IPR003593; KEGG: gvi:gll2264 HlyB/MsbA family ABC transporter; PFAM: ABC transporter-like; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: HlyB/MsbA family ABC transporter; PFAM: ABC transporter YP_004170295.1 COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931; KEGG: dge:Dgeo_1793 transglutaminase-like protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like; SPTR: Transglutaminase-like protein; PFAM: Transglutaminase-like superfamily; Domain of unknown function (DUF3488) YP_004170296.1 COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: dge:Dgeo_1793 transglutaminase-like protein; PFAM: Domain of unknown function DUF58; SPTR: Transglutaminase-like protein; PFAM: Protein of unknown function DUF58 YP_004170297.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: dra:DR_0621 MoxR protein; PFAM: ATPase, AAA-3; SPTR: MoxR protein; PFAM: ATPase family associated with various cellular activities (AAA) YP_004170298.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: dge:Dgeo_2227 peptidase M23B; PFAM: Peptidase M23; SPTR: Peptidase M23B; PFAM: Peptidase family M23 YP_004170299.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dge:Dgeo_0193 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold YP_004170300.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792; KEGG: dge:Dgeo_2791 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Transcriptional regulator, LuxR family; PFAM: Bacterial regulatory proteins, luxR family YP_004170301.1 KEGG: dra:DR_0104 hypothetical protein; SPTR: uncharacterized protein; PFAM: Sugar-specific transcriptional regulator TrmB YP_004170302.1 InterPro IPR011701; KEGG: rxy:Rxyl_1016 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily YP_004170303.1 COGs: COG2316 hydrolase (HD superfamily); InterPro IPR006674; KEGG: ddr:Deide_19520 hydrolase, HD superfamily; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SPTR: hydrolase, HD superfamily; PFAM: HD domain YP_004170304.1 KEGG: ddr:Deide_19530 hypothetical protein; SPTR: uncharacterized protein YP_004170305.1 KEGG: npu:Npun_F1300 hypothetical protein; SPTR: uncharacterized protein YP_004170306.1 InterPro IPR019887; KEGG: ddr:Deide_23200 hypothetical protein; PFAM: Transcription regulator AsnC-type, C-terminal; SPTR: uncharacterized protein; PFAM: AsnC family YP_004170307.1 COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR002933: IPR011650: IPR010168; KEGG: dge:Dgeo_0208 peptidase M20D, amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Aminoacylase; SPTR: Peptidase M20D, amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase YP_004170308.1 InterPro IPR014051; KEGG: dge:Dgeo_1904 hypothetical protein; PFAM: Phosphoesterase, HXTX; SPTR: 2'-5' phosphodiesterase of the 2H superfamily YP_004170309.1 COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; HAMAP: 2-thiocytidine tRNA biosynthesis protein, TtcA; InterPro IPR011063: IPR012089; KEGG: dge:Dgeo_1896 C32 tRNA thiolase; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase; SPTR: tRNA 2-thiocytidine biosynthesis protein TtcA; PFAM: PP-loop family YP_004170310.1 InterPro IPR000182; KEGG: ddr:Deide_1p00150 acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: acetyltransferase YP_004170311.1 COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153: IPR003148: IPR001607; KEGG: dra:DR_2367 glutathione-regulated potassium-efflux system protein KefB, PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; Zinc finger, UBP-type; SPTR: Glutathione-regulated potassium-efflux system protein KefB, ; PFAM: Zn-finger in ubiquitin-hydrolases and other protein; TrkA-N domain; Sodium/hydrogen exchanger family YP_004170312.1 COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR000089: IPR004167: IPR001078: IPR006256; KEGG: ddr:Deide_03170 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, (E2), (dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex); PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; PRIAM: Dihydrolipoyllysine-residue acetyltransferase; SPTR: Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, (E2), (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex); TIGRFAM: Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form YP_004170313.1 COGs: COG2609 Pyruvate dehydrogenase complex dehydrogenase (E1) component; InterPro IPR005474: IPR004660; KEGG: dge:Dgeo_1887 pyruvate dehydrogenase subunit E1; PFAM: Transketolase, N-terminal; PRIAM: Pyruvate dehydrogenase (acetyl-transferring); SPTR: Pyruvate dehydrogenase E1 component; TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type; PFAM: Transketolase, thiamine diphosphate binding domain; TIGRFAM: pyruvate dehydrogenase E1 component, homodimeric type YP_004170314.1 COGs: COG0583 Transcriptional regulator; InterPro IPR000847: IPR005119; KEGG: dge:Dgeo_1888 LysR family transcriptional regulator; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain YP_004170315.1 COGs: COG0693 intracellular protease/amidase; InterPro IPR002818: IPR006286; KEGG: ddr:Deide_04910 intracellular protease, PfpI family; PFAM: ThiJ/PfpI; SPTR: intracellular protease, PfpI family; TIGRFAM: Peptidase C56, PfpI; PFAM: DJ-1/PfpI family; TIGRFAM: intracellular protease, PfpI family YP_004170316.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149: IPR020843; KEGG: rsc:RCFBP_20230 quinone oxidoreductase (Cryz), zinc-binding; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SMART: Polyketide synthase, enoylreductase; SPTR: quinone oxidoreductase (Cryz), zinc-binding; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_004170317.1 InterPro IPR013096; KEGG: mrd:Mrad2831_1024 cupin 2 domain-containing protein; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2 conserved barrel domain protein; PFAM: Cupin domain YP_004170318.1 COGs: COG1003 Glycine cleavage system protein P (pyridoxal-binding) C-terminal domain; HAMAP: Glycine cleavage system P protein, homodimeric; InterPro IPR020580: IPR003437; KEGG: ddr:Deide_04940 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein, N-terminal; SPTR: Glycine dehydrogenase [decarboxylating]; TIGRFAM: Glycine cleavage system P protein, homodimeric; PFAM: Glycine cleavage system P-protein; TIGRFAM: glycine dehydrogenase (decarboxylating) YP_004170319.1 COGs: COG0509 Glycine cleavage system H protein (lipoate-binding); HAMAP: Glycine cleavage H-protein; InterPro IPR002930: IPR017453; KEGG: dra:DR_1811 glycine cleavage system protein H; PFAM: Glycine cleavage H-protein; SPTR: Glycine cleavage system H protein; TIGRFAM: Glycine cleavage H-protein, subgroup; PFAM: Glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein YP_004170320.1 COGs: COG0404 Glycine cleavage system T protein (aminomethyltransferase); HAMAP: Aminomethyltransferase; InterPro IPR006222: IPR013977: IPR022903: IPR006223; KEGG: ddr:Deide_04960 aminomethyltransferase (glycine cleavage system T protein); PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; PRIAM: Aminomethyltransferase; SPTR: Aminomethyltransferase; TIGRFAM: Glycine cleavage system T protein; manually curated; PFAM: Glycine cleavage T-protein C-terminal barrel domain; Aminomethyltransferase folate-binding domain; TIGRFAM: glycine cleavage system T protein YP_004170321.1 COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR001264: IPR001460; KEGG: dge:Dgeo_1895 peptidoglycan glycosyltransferase; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; SPTR: Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase YP_004170322.1 COGs: COG0605 Superoxide dismutase; InterPro IPR019831: IPR019832; KEGG: ddr:Deide_07760 superoxide dismutase; PFAM: manganese/iron superoxide dismutase, C-terminal; manganese/iron superoxide dismutase, N-terminal; SPTR: Superoxide dismutase; PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain YP_004170323.1 COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR002942: IPR006145: IPR006225; KEGG: dge:Dgeo_0604 pseudouridine synthase, RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; SMART: RNA-binding S4; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family YP_004170324.1 COGs: COG1281 Disulfide bond chaperones of the HSP33 family; HAMAP: Heat shock protein Hsp33 protein; InterPro IPR000397; KEGG: dge:Dgeo_0553 HSP33 protein; PFAM: Heat shock protein Hsp33 protein; SPTR: 33 kDa chaperonin; manually curated; PFAM: Hsp33 protein YP_004170325.1 COGs: COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A; InterPro IPR013482; KEGG: ddr:Deide_21150 molybdopterin-guanine dinucleotide biosynthesis protein A; SPTR: Probable molybdopterin-guanine dinucleotide biosynthesis protein A YP_004170326.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: ddr:Deide_21140 NAD-dependent aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; SPTR: NAD-dependent aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family YP_004170327.1 KEGG: dge:Dgeo_0284 hypothetical protein; SPTR: Copper/Zinc superoxide dismutase related enzyme; PFAM: Copper/zinc superoxide dismutase (SODC) YP_004170328.1 COGs: COG0742 N6-adenine-specific methylase; InterPro IPR004398; KEGG: dge:Dgeo_0285 hypothetical protein; PFAM: RNA methyltransferase, RsmD; SPTR: SAM-dependent methyltransferase, rRNA adenine N-6-methyltransferase family; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family YP_004170329.1 COGs: COG0669 Phosphopantetheine adenylyltransferase; HAMAP: Coenzyme A biosynthesis protein; InterPro IPR004820: IPR001980: IPR004821; KEGG: dge:Dgeo_0286 phosphopantetheine adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: Phosphopantetheine adenylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain YP_004170330.1 KEGG: tth:TTC1565 hypothetical protein; SPTR: Hypothetical conserved protein; PFAM: Tetratricopeptide repeat YP_004170331.1 COGs: COG0695 Glutaredoxin and related protein; InterPro IPR002109: IPR011911; KEGG: dra:DR_2085 glutaredoxin, PFAM: Glutaredoxin; SPTR: Glutaredoxin, ; TIGRFAM: Glutaredoxin-like protein, YruB; PFAM: Glutaredoxin; TIGRFAM: Glutaredoxin-like protein, YruB-family YP_004170332.1 KEGG: dge:Dgeo_0137 hypothetical protein; SPTR: Superfamily ribonuclease H protein; PFAM: RNase H YP_004170333.1 KEGG: dge:Dgeo_1941 hypothetical protein; SPTR: uncharacterized protein YP_004170334.1 COGs: COG1564 Thiamine pyrophosphokinase; InterPro IPR007371: IPR006282; KEGG: dge:Dgeo_1939 thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic domain; SPTR: Thiamine pyrophosphokinase; TIGRFAM: Thiamin pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, vitamin B1 binding domain; Thiamin pyrophosphokinase, catalytic domain; TIGRFAM: thiamine pyrophosphokinase YP_004170335.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR013656: IPR003018: IPR013655: IPR003661: IPR 003594: IPR000014: IPR001610; KEGG: ddr:Deide_1p00240 histidine kinase, classic; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; GAF; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAC motif; GAF; PAS; SPTR: histidine kinase, classic; TIGRFAM: PAS; PFAM: GAF domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004170336.1 InterPro IPR014966; KEGG: dge:Dgeo_0510 hypothetical protein; PFAM: FRG domain; SMART: FRG domain; SPTR: uncharacterized protein; PFAM: FRG domain YP_004170337.1 COGs: COG3393 acetyltransferase; InterPro IPR000182; KEGG: fal:FRAAL4848 acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: FR47 domain protein; PFAM: FR47-like protein YP_004170338.1 COGs: COG2957 Peptidylarginine deiminase; InterPro IPR007466; KEGG: dge:Dgeo_0034 peptidyl-arginine deiminase; PFAM: Peptidyl-arginine deiminase, porphyromonas-type; PRIAM: Agmatine deiminase; SPTR: porphyromonas-type peptidyl-arginine deiminase; PFAM: porphyromonas-type peptidyl-arginine deiminase YP_004170339.1 KEGG: dge:Dgeo_0035 hypothetical protein; SPTR: GCN5-related N-acetyltransferase duplicated domains YP_004170340.1 COGs: COG0388 amidohydrolase; InterPro IPR003010: IPR017755; KEGG: dge:Dgeo_0036 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PRIAM: N-carbamoylputrescine amidase; SPTR: Nitrilase/cyanide hydratase; TIGRFAM: N-carbamoylputrescine amidase; PFAM: Carbon-nitrogen hydrolase; TIGRFAM: N-carbamoylputrescine amidase YP_004170341.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR007892: IPR003660: IPR000160: IPR001633; KEGG: azo:azo1490 signaling protein; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; CHASE4; HAMP linker domain; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; HAMP linker domain; SPTR: Conserved hypothetical signaling protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; HAMP domain; GGDEF domain; CHASE4 domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004170342.1 InterPro IPR013216; KEGG: dra:DR_0468 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: uncharacterized protein YP_004170343.1 COGs: COG1957 Inosine-uridine nucleoside N-ribohydrolase; InterPro IPR001910; KEGG: msv:Mesil_0028 ribosylpyrimidine nucleosidase; PFAM: Inosine/uridine-preferring nucleoside hydrolase domain; PRIAM: Uridine nucleosidase; SPTR: ribosylpyrimidine nucleosidase; PFAM: Inosine-uridine preferring nucleoside hydrolase YP_004170344.1 KEGG: hau:Haur_2635 copper resistance protein CopC; SPTR: Amino acid ABC transporter, permease YP_004170345.1 KEGG: bur:Bcep18194_B1424 cytosine/purines, uracil, thiamine, allantoin transporter; SPTR: uncharacterized protein YP_004170346.1 KEGG: zma:100275217 hypothetical protein LOC100275217; SPTR: uncharacterized protein YP_004170347.1 KEGG: ppu:PP_2106 Rh family protein/ammonium transporter; SPTR: Cytochrome oxidase subunit I YP_004170348.1 InterPro IPR001915; KEGG: ddr:Deide_21060 peptidase family M48; membrane protein; PFAM: Peptidase M48; SPTR: peptidase family M48; membrane protein; PFAM: Peptidase family M48 YP_004170349.1 COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003959: IPR003593; KEGG: ddr:Deide_04980 recombination factor protein RarA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: DNA-dependent ATPase; PFAM: MgsA AAA+ ATPase C terminal; ATPase family associated with various cellular activities (AAA) YP_004170350.1 COGs: COG1109 Phosphomannomutase; InterProIPR005844: IPR005845: IPR005846: IPR005843: IPR 006352; KEGG: dra:DR_2071 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; PRIAM: Phosphoglucosamine mutase; SPTR: Phosphoglucosamine mutase; TIGRFAM: Phosphoglucosamine mutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucosamine mutase YP_004170351.1 COGs: COG0858 ribosome-binding factor A; InterPro IPR000238; KEGG: dge:Dgeo_1695 ribosome-binding factor A; PFAM: ribosome-binding factor A; SPTR: ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; TIGRFAM: ribosome-binding factor A YP_004170352.1 COGs: COG0824 thioesterase; InterPro IPR006683: IPR006684; KEGG: dra:DR_0902 hypothetical protein; PFAM: Thioesterase superfamily; SPTR: uncharacterized protein; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family YP_004170353.1 COGs: COG1329 Transcriptional regulators similar to M. xanthus CarD; InterPro IPR003711; KEGG: dge:Dgeo_0170 CarD family transcriptional regulator; PFAM: Transcription factor CarD; SPTR: Transcriptional regulator, CarD family; PFAM: CarD-like/TRCF domain YP_004170354.1 KEGG: gwc:GWCH70_0386 hypothetical protein; SPTR: uncharacterized protein YP_004170355.1 COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: dge:Dgeo_2423 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Stomatin/prohibitin family protein; PFAM: SPFH domain / Band 7 family YP_004170356.1 COGs: COG1174 ABC-type proline/glycine betaine transport systems permease component; InterPro IPR000515; KEGG: dge:Dgeo_0171 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type proline/glycine/betaine transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004170357.1 COGs: COG1125 ABC-type proline/glycine betaine transport systems ATPase components; InterPro IPR003439: IPR003593; KEGG: ddr:Deide_00170 ABC transporter, ATP-binding component; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding component; PFAM: ABC transporter YP_004170358.1 COGs: COG1174 ABC-type proline/glycine betaine transport systems permease component; InterPro IPR000515; KEGG: dge:Dgeo_0173 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type proline/glycine/betaine transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004170359.1 COGs: COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); InterPro IPR007210; KEGG: dge:Dgeo_0174 substrate-binding region of ABC-type glycine betaine transport system; PFAM: ABC-type glycine betaine transport system, substrate-binding domain; SPTR: ABC-type proline/glycine/betaine transport system, periplasmic component; PFAM: Substrate binding domain of ABC-type glycine betaine transport system YP_004170360.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: ddr:Deide_00200 DNA-binding protein HU (histone-like protein); PFAM: histone-like bacterial DNA-binding protein; SMART: histone-like bacterial DNA-binding protein; SPTR: DNA-binding protein HU (histone-like protein); PFAM: Bacterial DNA-binding protein YP_004170361.1 COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR000594: IPR007901; KEGG: ddr:Deide_00210 DNA-binding protein HU histone-like protein; PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; SPTR: DNA-binding protein HU histone-like protein; PFAM: MoeZ/MoeB domain; ThiF family YP_004170362.1 KEGG: scl:sce8822 hypothetical protein; SPTR: uncharacterized protein YP_004170363.1 COGs: COG0344 membrane protein; InterPro IPR003811; KEGG: ddr:Deide_00220 membrane protein; PFAM: Glycerol-3-phosphate acyltransferase, bacteria; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF205); TIGRFAM: acyl-phosphate glycerol 3-phosphate acyltransferase YP_004170364.1 KEGG: dge:Dgeo_0178 tetratricopeptide TPR_2; SPTR: Tetratricopeptide TPR_2 YP_004170365.1 InterPro IPR012854; KEGG: dge:Dgeo_0179 hypothetical protein; PFAM: Copper amine oxidase-like, N-terminal; SPTR: uncharacterized protein; PFAM: Copper amine oxidase N-terminal domain YP_004170366.1 COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro IPR006204: IPR013750: IPR004424; KEGG: dge:Dgeo_0180 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; PRIAM: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; SPTR: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_004170367.1 COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; InterPro IPR001228; KEGG: ddr:Deide_00250 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, ( 4-diphosphocytidyl-2C-methyl-D-erythritol synthase); PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_004170368.1 COGs: COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; InterPro IPR003382: IPR004507; KEGG: dra:DR_2603 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: Flavoprotein; SPTR: Probable aromatic acid decarboxylase; TIGRFAM: phenylacrylic acid decarboxylase; PFAM: Flavoprotein; TIGRFAM: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases YP_004170369.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789: IPR000792; KEGG: dge:Dgeo_0183 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004170370.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712: IPR003594; KEGG: dge:Dgeo_0184 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: signal transduction histidine kinase; PFAM: histidine kinase; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004170371.1 InterPro IPR013525; KEGG: dge:Dgeo_0185 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter YP_004170372.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: dra:DR_A0007 ABC transporter, ATP-binding protein, PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein, ; PFAM: ABC transporter YP_004170373.1 KEGG: dge:Dgeo_0188 hypothetical protein; SPTR: DNA single-strand annealing protein, containing HHH motif, Rad42/Rad22/RecT/erf family YP_004170374.1 InterPro IPR004843; KEGG: ddr:Deide_00300 hypothetical protein; PFAM: Metallo-dependent phosphatase; SPTR: uncharacterized protein; PFAM: Calcineurin-like phosphoesterase YP_004170375.1 HAMAP: ribosomal protein L34; InterPro IPR000271; KEGG: dge:Dgeo_1568 50S ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type YP_004170376.1 COGs: COG0594 RNase P protein component; HAMAP: ribonuclease P; InterPro IPR000100; KEGG: dra:DR_2151 ribonuclease P protein component; PFAM: ribonuclease P; SPTR: ribonuclease P protein component; PFAM: ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial YP_004170377.1 COGs: COG0759 conserved hypothetical protein; HAMAP: Protein of unknown function DUF37; InterPro IPR002696; KEGG: sth:STH3339 alpha-hemolysin; PFAM: Protein of unknown function DUF37; SPTR: UPF0161 protein STH3339; TIGRFAM: Protein of unknown function DUF37; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD YP_004170378.1 COGs: COG0706 Preprotein translocase subunit YidC; InterPro IPR001708; KEGG: dge:Dgeo_1565 60 kDa inner membrane insertion protein; PFAM: Membrane insertion protein, OxaA/YidC; SPTR: 60 kDa inner membrane insertion protein; TIGRFAM: Membrane insertion protein, OxaA/YidC; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain YP_004170379.1 COGs: COG1847 RNA-binding protein; InterPro IPR001374; KEGG: ddr:Deide_01680 Jag-related protein, RNA binding protein; PFAM: Single-stranded nucleic acid binding R3H; SMART: Single-stranded nucleic acid binding R3H; SPTR: Jag-related protein, RNA binding protein; PFAM: R3H domain YP_004170380.1 COGs: COG2890 Methylase of polypeptide chain release factors; InterPro IPR007848: IPR004556: IPR019874; KEGG: ddr:Deide_01670 protein HemK (M.VchAHemK2P); PFAM: Methyltransferase small; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: uncharacterized protein; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: Methyltransferase small domain; TIGRFAM: HemK family methylases; protein-(glutamine-N5) methyltransferase, release factor-specific YP_004170381.1 COGs: COG4328 conserved hypothetical protein; InterPro IPR007362; KEGG: cyb:CYB_1617 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF429) YP_004170382.1 COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR001264: IPR001460; KEGG: dge:Dgeo_1068 peptidoglycan glycosyltransferase; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Transpeptidase-transglycosylase component; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase YP_004170383.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: dge:Dgeo_1069 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain YP_004170384.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: dge:Dgeo_1070 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme YP_004170385.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149: IPR020843; KEGG: ttj:TTHA0466 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SMART: Polyketide synthase, enoylreductase; SPTR: Alcohol dehydrogenase GroES domain protein; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_004170386.1 COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: dge:Dgeo_1264 LmbE-like protein protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: LmbE-like protein protein; PFAM: GlcNAc-PI de-N-acetylase YP_004170387.1 InterPro IPR000182; KEGG: dge:Dgeo_0737 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004170388.1 COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: dge:Dgeo_0951 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; PFAM: Polysaccharide deacetylase YP_004170389.1 KEGG: msv:Mesil_2622 hypothetical protein; SPTR: uncharacterized protein YP_004170390.1 COGs: COG4299 conserved hypothetical protein; KEGG: dge:Dgeo_0949 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1624) YP_004170391.1 KEGG: ddr:Deide_2p01880 phosphate ABC transporter, periplasmic component, PstS; SPTR: phosphate ABC transporter, periplasmic component, PstS YP_004170392.1 COGs: COG0704 Phosphate uptake regulator; InterPro IPR008170; KEGG: ddr:Deide_19820 phosphate transport system protein PhoU; PFAM: PhoU; SPTR: phosphate transport system protein phoU; TIGRFAM: PhoU; PFAM: PhoU domain; TIGRFAM: phosphate transport system regulatory protein PhoU YP_004170393.1 COGs: COG5002 Signal transduction histidine kinase; InterPro IPR003661: IPR003594; KEGG: ddr:Deide_19810 histidine kinase, classic; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: histidine kinase, classic; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004170394.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: ddr:Deide_19800 response regulator, CheY; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Phosphate regulon transcriptional regulatory protein PhoB; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004170395.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: dra:DR_2557 hypothetical protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily YP_004170396.1 KEGG: dge:Dgeo_2267 hypothetical protein; SPTR: uncharacterized protein YP_004170397.1 COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: dge:Dgeo_0231 PSP1; PFAM: PSP1, C-terminal; SPTR: PSP1; manually curated; PFAM: PSP1 C-terminal conserved region YP_004170398.1 COGs: COG0217 conserved hypothetical protein; HAMAP: Protein of unknown function DUF28; InterPro IPR002876; KEGG: dra:DR_2548 hypothetical protein; PFAM: Protein of unknown function DUF28; SPTR: UPF0082 protein DR_2548; TIGRFAM: Protein of unknown function DUF28; PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family YP_004170399.1 KEGG: dhd:Dhaf_0838 transcriptional regulator, PadR-like family; SPTR: uncharacterized protein YP_004170400.1 KEGG: ddr:Deide_20645 hypothetical protein; SPTR: uncharacterized protein YP_004170401.1 InterPro IPR001087; KEGG: rmr:Rmar_0133 hypothetical protein; PFAM: lipase, GDSL; SPTR: uncharacterized protein; PFAM: GDSL-like lipase/Acylhydrolase YP_004170402.1 COGs: COG1290 Cytochrome b subunit of the bc complex; InterPro IPR005797; KEGG: dge:Dgeo_0319 cytochrome b/b6-like protein; PFAM: Cytochrome b/b6, N-terminal; SPTR: Cytochrome b/b6-like protein YP_004170403.1 COGs: COG0723 Rieske Fe-S protein; InterPro IPR017941; KEGG: dge:Dgeo_0318 Rieske (2Fe-2S) region; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske (2Fe-2S) region; PFAM: Rieske [2Fe-2S] domain YP_004170404.1 InterPro IPR003088; KEGG: ddr:Deide_20670 cytochrome c; PFAM: Cytochrome c, class I; SPTR: Cytochrome c; PFAM: Cytochrome c YP_004170405.1 COGs: COG2367 Beta-lactamase class A; InterPro IPR001466; KEGG: dge:Dgeo_0316 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase YP_004170406.1 KEGG: tra:Trad_2667 hypothetical protein; SPTR: uncharacterized protein YP_004170407.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789: IPR000792; KEGG: ddr:Deide_20700 response regulator, NarL; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR: response regulator, NarL; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004170408.1 KEGG: dra:DR_2018 hypothetical protein; SPTR: uncharacterized protein YP_004170409.1 COGs: COG0079 histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; HAMAP: histidinol-phosphate aminotransferase; InterPro IPR004839: IPR005861; KEGG: dge:Dgeo_0118 aminotransferase, class I and II; PFAM: Aminotransferase, class I/classII; PRIAM: histidinol-phosphate transaminase; SPTR: histidinol-phosphate aminotransferase; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase YP_004170410.1 COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: dge:Dgeo_0117 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: YsiA-like protein, C-terminal region; Bacterial regulatory proteins, tetR family YP_004170411.1 KEGG: dge:Dgeo_0116 hypothetical protein; SPTR: uncharacterized protein YP_004170412.1 COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125; KEGG: dge:Dgeo_1071 CMP/dCMP deaminase, zinc-binding; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: CMP/dCMP deaminase, zinc-binding; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_004170413.1 KEGG: apt:APA01_40640 replication protein C; SPTR: Replication protein C YP_004170414.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: dge:Dgeo_1072 PfkB; PFAM: Carbohydrate/purine kinase; PRIAM: ribokinase; SPTR: Sugar kinase, ribokinase family; PFAM: pfkB family carbohydrate kinase; TIGRFAM: ribokinase YP_004170415.1 COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR005475: IPR005476; KEGG: dge:Dgeo_1562 transketolase, central region; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: Pyruvate dehydrogenase (acetyl-transferring); SMART: Transketolase-like, pyrimidine-binding domain; SPTR: 2-oxoisovalerate dehydrogenase, OdbB; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain YP_004170416.1 COGs: COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type alpha subunit; InterPro IPR001017: IPR017596; KEGG: ddr:Deide_03910 pyruvate dehydrogenase E1 component subunit alpha; PFAM: Dehydrogenase, E1 component; PRIAM: Pyruvate dehydrogenase (acetyl-transferring); SPTR: Pyruvate dehydrogenase E1 component subunit alpha; TIGRFAM: Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit subgroup x; PFAM: Dehydrogenase E1 component; TIGRFAM: pyruvate dehydrogenase E1 component, alpha subunit YP_004170417.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: bts:Btus_1290 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; PRIAM: Betaine-aldehyde dehydrogenase; SPTR: Aldehyde Dehydrogenase; PFAM: Aldehyde dehydrogenase family YP_004170418.1 KEGG: zma:100383513 hypothetical protein LOC100383513; SPTR: uncharacterized protein YP_004170419.1 COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: ddr:Deide_07270 hypothetical protein; PFAM: histidine phosphatase superfamily, clade-1; SPTR: uncharacterized protein; PFAM: Phosphoglycerate mutase family YP_004170420.1 KEGG: dra:DR_2143 hypothetical protein; SPTR: uncharacterized protein YP_004170421.1 COGs: COG1585 Membrane protein implicated in regulation of membrane protease activity; InterPro IPR002810; KEGG: ddr:Deide_07290 hypothetical protein; PFAM: Nodulation efficiency, NfeD; SPTR: uncharacterized protein; PFAM: NfeD-like YP_004170422.1 COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: bba:Bd1667 alginate O-acetyltransferase AlgI; PFAM: Membrane bound O-acyl transferase, MBOAT; SPTR: Alginate o-acetyltransferase AlgI; PFAM: MBOAT family YP_004170423.1 KEGG: sus:Acid_6047 hypothetical protein; SPTR: uncharacterized protein YP_004170424.1 COGs: COG1464 ABC-type metal ion transport system periplasmic component/surface antigen; InterPro IPR004872; KEGG: dra:DR_1359 outer membrane protein; PFAM: NLPA lipoprotein; SPTR: Outer membrane protein; PFAM: NLPA lipoprotein; TIGRFAM: lipoprotein, YaeC family YP_004170425.1 COGs: COG1464 ABC-type metal ion transport system periplasmic component/surface antigen; InterPro IPR004872; KEGG: dra:DR_1358 outer membrane protein; PFAM: NLPA lipoprotein; SPTR: Outer membrane protein; PFAM: NLPA lipoprotein; TIGRFAM: lipoprotein, YaeC family YP_004170426.1 COGs: COG2011 ABC-type metal ion transport system permease component; InterPro IPR000515; KEGG: ddr:Deide_22350 ABC transporter, permease component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004170427.1 COGs: COG1135 ABC-type metal ion transport system ATPase component; InterPro IPR003439: IPR013563: IPR003593; KEGG: ddr:Deide_22360 ABC transporter, ATP-binding component; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding component; PFAM: ABC transporter YP_004170428.1 InterPro IPR018725; KEGG: ddr:Deide_14981 conserved hypothetical protein, precursor; PFAM: Protein of unknown function DUF2259, secreted; SPTR: uncharacterized protein; PFAM: Predicted secreted protein (DUF2259) YP_004170429.1 COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176: IPR006108; KEGG: mrb:Mrub_1329 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; PRIAM: 3-hydroxybutyryl-CoA dehydrogenase; SPTR: 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YP_004170430.1 COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR020616: IPR020617: IPR002155; KEGG: msv:Mesil_2321 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; PRIAM: 3-oxoadipyl-CoA thiolase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: Thiolase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase YP_004170431.1 KEGG: dge:Dgeo_2466 hypothetical protein; SPTR: uncharacterized protein YP_004170432.1 KEGG: dge:Dgeo_2465 hypothetical protein; SPTR: uncharacterized protein YP_004170433.1 COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR001264: IPR001460; KEGG: dge:Dgeo_2464 glycosyl transferase; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; SPTR: PBP1 protein; transglycosylase, transpeptidase domain; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase YP_004170434.1 KEGG: dge:Dgeo_2463 hypothetical protein; SPTR: uncharacterized protein YP_004170435.1 COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: ddr:Deide_09570 histone deacetylase superfamily; PFAM: histone deacetylase superfamily; PRIAM: histone deacetylase; SPTR: histone deacetylase superfamily; PFAM: histone deacetylase domain YP_004170436.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: reh:H16_A0147 alpha/beta superfamily hydrolase/acyltransferase; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold YP_004170437.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712: IPR003594; KEGG: dge:Dgeo_1706 periplasmic sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; SPTR: Periplasmic sensor signal transduction histidine kinase; PFAM: histidine kinase; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004170438.1 KEGG: dge:Dgeo_1707 hypothetical protein; SPTR: uncharacterized protein YP_004170439.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789: IPR000792; KEGG: ddr:Deide_15370 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR: DNA-binding response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004170440.1 InterPro IPR000182; KEGG: avn:Avin_46600 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: ribosomal-protein-alanine acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004170441.1 KEGG: syr:SynRCC307_0478 Na+/galactoside symporter; SPTR: GPH family sugar transporter YP_004170442.1 KEGG: ddr:Deide_02660 hypothetical protein; SPTR: uncharacterized protein YP_004170443.1 KEGG: mpd:MCP_0344 A-type ATP synthase subunit I; SPTR: Membrane protein YP_004170444.1 COGs: COG5496 thioesterase; KEGG: ddr:Deide_20170 hypothetical protein; SPTR: uncharacterized protein YP_004170445.1 InterPro IPR009799; KEGG: sti:Sthe_2575 ethyl tert-butyl ether degradation EthD; PFAM: Ethyl tert-butyl ether degradation EthD; SPTR: Ethyl tert-butyl ether degradation EthD; TIGRFAM: Ethyl tert-butyl ether degradation EthD; PFAM: EthD protein; TIGRFAM: conserved hypothetical protein YP_004170446.1 COGs: COG0281 Malic enzyme; InterPro IPR012301: IPR012302; KEGG: dge:Dgeo_2155 malate dehydrogenase; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; SMART: Malic enzyme, NAD-binding; SPTR: Malate dehydrogenase (Oxaloacetate decarboxylating) (NADP+); PFAM: Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain YP_004170447.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR023210; KEGG: pjd:Pjdr2_1628 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase family YP_004170448.1 KEGG: dge:Dgeo_2210 hypothetical protein; SPTR: 2'-5' phosphodiesterase of 2H superfamily YP_004170449.1 InterPro IPR000086; KEGG: dge:Dgeo_1697 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; PFAM: NUDIX domain YP_004170450.1 KEGG: dra:DR_0726 hypothetical protein; SPTR: uncharacterized protein YP_004170451.1 COGs: COG1651 Protein-disulfide isomerase; InterPro IPR001853; KEGG: msv:Mesil_2375 DsbA oxidoreductase; PFAM: DSBA-like thioredoxin domain; SPTR: DSBA oxidoreductase YP_004170452.1 COGs: COG2094 3-methyladenine DNA glycosylase; HAMAP: Methylpurine-DNA glycosylase (MPG); InterPro IPR003180; KEGG: dge:Dgeo_1660 DNA-3-methyladenine glycosylase; PFAM: Methylpurine-DNA glycosylase (MPG); SPTR: 3-methyladenine DNA glycosylase; TIGRFAM: Methylpurine-DNA glycosylase (MPG); PFAM: Methylpurine-DNA glycosylase (MPG); TIGRFAM: DNA-3-methyladenine glycosylase (3mg) YP_004170453.1 COGs: COG3224 conserved hypothetical protein; InterPro IPR007138; KEGG: ddr:Deide_07300 hypothetical protein; PFAM: Antibiotic biosynthesis monooxygenase; SPTR: uncharacterized protein; PFAM: Antibiotic biosynthesis monooxygenase YP_004170454.1 COGs: COG0566 rRNA methylase; InterPro IPR013123: IPR001537: IPR004441; KEGG: dge:Dgeo_2022 RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SMART: RNA 2-O ribose methyltransferase, substrate binding; SPTR: RNA methyltransferase TrmH, group 3; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, , group 3 YP_004170455.1 COGs: COG2017 Galactose mutarotase; InterPro IPR008183; KEGG: ddr:Deide_04840 aldose 1-epimerase (aldose mutarotase); PFAM: Aldose 1-epimerase; SPTR: aldose 1-epimerase (Aldose mutarotase); PFAM: Aldose 1-epimerase YP_004170456.1 COGs: COG1522 Transcriptional regulators; InterPro IPR019887: IPR001845: IPR019888; KEGG: ddr:Deide_03140 transcriptional regulator, AsnC family; transcriptional regulator, Lrp; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type; HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, AsnC family; Transcriptional regulator, Lrp; PFAM: AsnC family YP_004170457.1 InterPro IPR000620; KEGG: dge:Dgeo_1580 hypothetical protein; PFAM: Drug/metabolite transporter; SPTR: uncharacterized protein; PFAM: EamA-like transporter family YP_004170458.1 KEGG: ddr:Deide_11130 hypothetical protein; SPTR: uncharacterized protein YP_004170459.1 KEGG: gau:GAU_3355 hypothetical membrane protein; SPTR: uncharacterized protein YP_004170460.1 KEGG: dge:Dgeo_1997 hypothetical protein; SPTR: uncharacterized protein YP_004170461.1 COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR007197: IPR006638: IPR022431: IPR020050; KEGG: dge:Dgeo_1998 hypothetical protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; TIGRFAM: Menaquinone biosynthesis, SCO4550; FO synthase, subunit 2; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM domain protein, CofH subfamily; menaquinone biosynthesis protein, SCO4550 family YP_004170462.1 COGs: COG0723 Rieske Fe-S protein; InterPro IPR017941; KEGG: dge:Dgeo_1251 Rieske (2Fe-2S) region; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske (2Fe-2S) region; PFAM: Rieske [2Fe-2S] domain YP_004170463.1 InterPro IPR003088; KEGG: dge:Dgeo_1250 tetratricopeptide TPR_2; PFAM: Cytochrome c, class I; SPTR: Cytochrome oxidase containing TPR repeats; PFAM: Cytochrome c YP_004170464.1 COGs: COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes; InterPro IPR005616; KEGG: dge:Dgeo_1249 cytochrome c biogenesis protein; PFAM: Cytochrome C biogenesis protein CcmH; SPTR: Cytochrome C biogenesis protein; PFAM: Cytochrome C biogenesis protein YP_004170465.1 COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: dge:Dgeo_1248 redoxin; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; SPTR: Redoxin; PFAM: AhpC/TSA family; TIGRFAM: methylamine dehydrogenase accessory protein MauD; periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily YP_004170466.1 COGs: COG1138 Cytochrome c biogenesis factor; InterPro IPR002541; KEGG: ddr:Deide_08300 cytochrome c-type biogenesis protein CcmF (CycK); membrane protein; PFAM: Cytochrome c assembly protein; SPTR: cytochrome c-type biogenesis protein ccmF (CycK); membrane protein; PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF YP_004170467.1 COGs: COG2332 Cytochrome c-type biogenesis protein CcmE; HAMAP: CcmE/CycJ protein; InterPro IPR004329; KEGG: dge:Dgeo_1246 cytochrome c-type biogenesis protein CcmE; PFAM: CcmE/CycJ protein; SPTR: Cytochrome c-type biogenesis protein CcmE; PFAM: CcmE YP_004170469.1 COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR002541; KEGG: ddr:Deide_08320 cytochrome c-type biogenesis protein CcmC; membrane protein; PFAM: Cytochrome c assembly protein; SPTR: cytochrome c-type biogenesis protein ccmC; membrane protein; PFAM: Cytochrome C assembly protein YP_004170470.1 COGs: COG2386 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR003544; KEGG: ddr:Deide_08330 cytochrome c-type biogenesis protein CcmB; membrane protein; PFAM: Cytochrome c-type biogenesis protein CcmB; SPTR: Cytochrome c-type biogenesis protein ccmB; membrane protein; PFAM: CcmB protein; TIGRFAM: heme exporter protein CcmB YP_004170471.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593: IPR005895; KEGG: dge:Dgeo_1242 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Heme-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type transport system, ATPase component; TIGRFAM: ABC transporter, haem export, CcmA; PFAM: ABC transporter; TIGRFAM: heme ABC exporter, ATP-binding protein CcmA YP_004170472.1 COGs: COG0785 Cytochrome c biogenesis protein; InterPro IPR003834; KEGG: dge:Dgeo_1241 cytochrome c biogenesis protein, transmembrane region; PFAM: Cytochrome c assembly protein, transmembrane domain; SPTR: Cytochrome c biogenesis protein, transmembrane region; PFAM: Cytochrome C biogenesis protein transmembrane region YP_004170473.1 KEGG: dge:Dgeo_1067 penicillin-binding protein 1B McrB, SPTR: Transpeptidase-transglycosylase component YP_004170474.1 InterPro IPR000835; KEGG: ddr:Deide_01540 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; PFAM: MarR family YP_004170475.1 COGs: COG2124 Cytochrome P450; InterPro IPR001128; KEGG: dge:Dgeo_0143 cytochrome P450; PFAM: Cytochrome P450; SPTR: Cytochrome P450; PFAM: Cytochrome P450 YP_004170476.1 KEGG: uma:UM04805.1 hypothetical protein; SPTR: Predicted protein YP_004170477.1 COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843: IPR008334; KEGG: dge:Dgeo_2751 5'-nucleotidase-like; PFAM: 5'-Nucleotidase, C-terminal; Metallo-dependent phosphatase; PRIAM: 5'-nucleotidase; SPTR: 5'-Nucleotidase-like protein; PFAM: Calcineurin-like phosphoesterase; 5'-nucleotidase, C-terminal domain YP_004170478.1 KEGG: mpo:Mpop_4635 hypothetical protein; SPTR: uncharacterized protein YP_004170479.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: str:Sterm_1953 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; SPTR: Acyl-CoA synthetase; PFAM: AMP-binding enzyme YP_004170480.1 KEGG: str:Sterm_1952 GCN5-related N-acetyltransferase; SPTR: uncharacterized protein YP_004170481.1 InterPro IPR000374; KEGG: str:Sterm_1951 phosphatidate cytidylyltransferase; PFAM: Phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase family YP_004170482.1 COGs: COG5379 S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase; KEGG: str:Sterm_1950 S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase-like protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3419) YP_004170483.1 COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR002192: IPR008279; KEGG: str:Sterm_1949 pyruvate phosphate dikinase PEP/pyruvate-binding protein; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; SPTR: Phosphoenolpyruvate synthase; PFAM: PEP-utilising enzyme, mobile domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain YP_004170484.1 KEGG: str:Sterm_1948 UbiA prenyltransferase; SPTR: manganese transport system permease; PFAM: UbiA prenyltransferase family YP_004170485.1 COGs: COG2217 Cation transport ATPase; InterProIPR006121: IPR008250: IPR005834: IPR006404: IPR 006416: IPR001757; KEGG: dge:Dgeo_2752 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; haloacid dehalogenase-like hydrolase; PRIAM: Cadmium-exporting ATPase; SPTR: Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase YP_004170486.1 InterPro IPR001845; KEGG: ddr:Deide_02570 transcriptional repressor SmtB; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional repressor smtB; PFAM: Bacterial regulatory protein, arsR family YP_004170487.1 InterPro IPR019316; KEGG: mrb:Mrub_1368 transmembrane domain-containing protein; PFAM: G8 domain; SPTR: Transmembrane domain containing protein; PFAM: G8 domain YP_004170488.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: gym:GYMC10_4924 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-ACP reductase; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004170489.1 COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198: IPR020842; KEGG: ddr:Deide_15180 short-chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Estradiol 17-beta-dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR; SPTR: Short-chain dehydrogenase; PFAM: short chain dehydrogenase YP_004170490.1 COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076; KEGG: dge:Dgeo_0757 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain YP_004170491.1 COGs: COG0009 translation factor (SUA5); InterPro IPR006070: IPR004388; KEGG: ddr:Deide_08591 translation factor (SUA5); PFAM: Sua5/YciO/YrdC, N-terminal; SPTR: translation factor (SUA5); TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein YP_004170492.1 COGs: COG1386 transcriptional regulator protein containing the HTH domain; InterPro IPR005234; KEGG: ddr:Deide_08600 segregation and condensation protein B; PFAM: Chromosome segregation/condensation protein ScpB, prokaryote; SPTR: segregation and condensation protein B; TIGRFAM: Chromosome segregation/condensation protein ScpB, prokaryote; PFAM: transcriptional regulators (Ypuh-like); TIGRFAM: segregation and condensation protein B YP_004170493.1 KEGG: ddr:Deide_08610 hypothetical protein; SPTR: uncharacterized protein YP_004170494.1 COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; InterPro IPR000120: IPR004412; KEGG: dge:Dgeo_0760 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase; SPTR: Glutamyl-tRNA(Gln) amidotransferase subunit A; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; PFAM: Amidase; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit YP_004170495.1 COGs: COG0541 Signal recognition particle GTPase; InterProIPR013822: IPR000897: IPR004125: IPR003593: IPR 004780; KEGG: ddr:Deide_13040 signal recognition particle protein, fifty-four protein; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core; SPTR: Signal recognition particle protein, Fifty-four protein; TIGRFAM: Signal recognition particle, SRP; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein YP_004170496.1 COGs: COG3569 Topoisomerase IB; KEGG: dra:DR_0690 type I topoisomerase, PRIAM: DNA topoisomerase; SPTR: Type I topoisomerase, ; PFAM: Eukaryotic DNA topoisomerase I, catalytic core YP_004170497.1 COGs: COG0387 Ca2+/H+ antiporter; InterPro IPR004837: IPR004798; KEGG: dge:Dgeo_2427 calcium/proton exchanger; PFAM: Sodium/calcium exchanger membrane region; SPTR: Calcium/proton exchanger; TIGRFAM: Calcium/proton exchanger superfamily; PFAM: Sodium/calcium exchanger protein; TIGRFAM: calcium/proton exchanger; calcium/proton exchanger (cax) YP_004170498.1 COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176: IPR006108; KEGG: ddr:Deide_01590 3-hydroxybutyryl-CoA dehydrogenase,(beta-hydroxybutyryl-CoA dehydrogenase, BhbD); PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; PRIAM: 3-hydroxybutyryl-CoA dehydrogenase; SPTR: 3-hydroxybutyryl-CoA dehydrogenase,(Beta-hydroxybutyryl-CoA dehydrogenase, BHBD); PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YP_004170499.1 COGs: COG2350 conserved hypothetical protein; InterPro IPR005545; KEGG: dge:Dgeo_1442 YCII-related; PFAM: YCII-related; SPTR: YCII-related protein; PFAM: YCII-related domain YP_004170500.1 COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR020616: IPR020617: IPR002155; KEGG: ddr:Deide_01560 acetyl-CoA acetyltransferase, (acetoacetyl-CoA thiolase); PFAM: Thiolase, N-terminal; Thiolase, C-terminal; PRIAM: Acetyl-CoA C-acetyltransferase; SPTR: Acetyl-CoA acetyltransferase, (Acetoacetyl-CoA thiolase); TIGRFAM: Thiolase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases YP_004170501.1 COGs: COG1859 RNA:NAD 2'-phosphotransferase; HAMAP: 2'-phosphotransferase KptA, InterPro IPR002745: IPR022928; KEGG: ddr:Deide_02300 phosphotransferase KptA/Tpt1; probable RNA 2-phosphotransferase; PFAM: Phosphotransferase KptA/Tpt1; SPTR: Probable RNA 2'-phosphotransferase; PFAM: RNA 2'-phosphotransferase, Tpt1 / KptA family YP_004170502.1 COGs: COG2839 conserved hypothetical protein; InterPro IPR007403; KEGG: dge:Dgeo_1447 hypothetical protein; PFAM: Protein of unknown function DUF456; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF456) YP_004170503.1 InterPro IPR008554; KEGG: dge:Dgeo_0729 glutaredoxin 2; PFAM: Glutaredoxin-like; SPTR: Glutaredoxin 2; PFAM: Glutaredoxin-like domain (DUF836) YP_004170504.1 COGs: COG0682 Prolipoprotein diacylglyceryltransferase; HAMAP: Prolipoprotein diacylglyceryl transferase; InterPro IPR001640; KEGG: dge:Dgeo_1966 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase YP_004170505.1 COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; InterPro IPR005835: IPR001451: IPR005882; KEGG: dge:Dgeo_1967 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; PFAM: Nucleotidyl transferase; Bacterial transferase hexapeptide repeat; PRIAM: Glucosamine-1-phosphate N-acetyltransferase; SPTR: Bifunctional protein glmU; TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase YP_004170506.1 InterPro IPR003369; KEGG: dge:Dgeo_1964 twin arginine-targeting protein translocase; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106; SPTR: Sec-independent protein translocase tatA/E homolog 3; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family YP_004170507.1 COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR002033: IPR019822; KEGG: dge:Dgeo_1965 sec-independent protein translocase TatC; PFAM: Sec-independent periplasmic protein translocase; SPTR: Sec-independent protein translocase TatC; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent protein translocase (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC YP_004170508.1 COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterProIPR020822: IPR006218: IPR002701: IPR010954: IPR 006268; KEGG: ddr:Deide_05640 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; PFAM: DAHP synthetase I/KDSA; Chorismate mutase, type II; SMART: Chorismate mutase; SPTR: 3-deoxy-7-phosphoheptulonate synthase (Phospho-2-dehydro-3-deoxyheptonate aldolase); TIGRFAM: Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2; Chorismate mutase, Gram-positive bacteria/Deinococcus; PFAM: Chorismate mutase type II; DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; chorismate mutase domain of gram positive AroA protein YP_004170509.1 COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; InterPro IPR014044; KEGG: dra:DR_1548 hypothetical protein; PFAM: CAP domain; SPTR: uncharacterized protein; PFAM: Cysteine-rich secretory protein family YP_004170510.1 COGs: COG1387 histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR004013: IPR002054: IPR003583: IPR003141; KEGG: ddr:Deide_07030 DNA polymerase, family X; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal; DNA-directed DNA polymerase X; Helix-hairpin-helix DNA-binding motif, class 1; SPTR: DNA polymerase, family X; PFAM: PHP domain YP_004170511.1 COGs: COG1387 histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR004013: IPR010140; KEGG: dge:Dgeo_1608 histidinol-phosphatase; PFAM: PHP, C-terminal; SPTR: histidinol phosphate phosphatase, HisJ; TIGRFAM: histidinol phosphate phosphatase, HisJ; PFAM: PHP domain; TIGRFAM: histidinol phosphate phosphatase HisJ family YP_004170512.1 COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: ddr:Deide_20400 phosphoglycerate mutase GpmB; PFAM: histidine phosphatase superfamily, clade-1; SMART: histidine phosphatase superfamily, clade-1; SPTR: phosphoglycerate mutase gpmB; PFAM: Phosphoglycerate mutase family YP_004170513.1 COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: ddr:Deide_20410 acetyl-CoA hydrolase; PFAM: Thioesterase superfamily; SPTR: acetyl-CoA hydrolase; manually curated; PFAM: Thioesterase superfamily YP_004170514.1 KEGG: bcv:Bcav_1525 ABC transporter related YP_004170515.1 InterPro IPR008160: IPR011083; KEGG: bwe:BcerKBAB4_3477 triple helix repeat-containing collagen; PFAM: Phage tail collar; Collagen triple helix repeat; SPTR: uncharacterized protein; PFAM: Collagen triple helix repeat (20 copies); Phage Tail Collar Domain YP_004170516.1 InterPro IPR001647; KEGG: dge:Dgeo_1764 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family YP_004170517.1 KEGG: gga:769653 hypothetical protein LOC769653; SPTR: Tetratricopeptide TPR_4 YP_004170518.1 COGs: COG3573 oxidoreductase; InterPro IPR003953; KEGG: dge:Dgeo_0675 FAD-binding dehydrogenase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: Fumarate reductase/succinate dehydrogenase flavoprotein-like protein; PFAM: FAD binding domain YP_004170519.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR010259: IPR000209; KEGG: dge:Dgeo_0978 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Proteinase inhibitor I9, subtilisin propeptide; PRIAM: Aqualysin 1; SPTR: Peptidase S8 and S53, subtilisin, kexin, sedolisin; PFAM: Peptidase inhibitor I9; Subtilase family YP_004170520.1 KEGG: rmu:RMDY18_08390 hypothetical protein YP_004170521.1 COGs: COG1485 ATPase; InterPro IPR005654; KEGG: dge:Dgeo_2019 AFG1-like protein ATPase; PFAM: ATPase, AFG1-like; SPTR: AFG1-like protein ATPase; PFAM: AFG1-like ATPase YP_004170522.1 KEGG: ddr:Deide_19965 hypothetical protein; SPTR: uncharacterized protein YP_004170523.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933: IPR011650; KEGG: dge:Dgeo_0366 peptidase M20; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Glutamate carboxypeptidase; SPTR: Peptidase M20; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain YP_004170524.1 KEGG: dge:Dgeo_0367 hypothetical protein; SPTR: uncharacterized protein YP_004170525.1 KEGG: kfl:Kfla_1142 triacylglycerol lipase; PRIAM: Triacylglycerol lipase; SPTR: Triacylglycerol lipase; PFAM: Dienelactone hydrolase family YP_004170526.1 COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006175; KEGG: dge:Dgeo_0512 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: translation initiation inhibitor, yjgF family; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP YP_004170527.1 COGs: COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218: IPR006219; KEGG: dge:Dgeo_1821 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: Phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: DHAP synthase, class 1; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase YP_004170528.1 COGs: COG2107 periplasmic solute-binding protein; KEGG: dge:Dgeo_1810 hypothetical protein; SPTR: uncharacterized protein; PFAM: periplasminc binding protein (DUF178) YP_004170529.1 KEGG: dge:Dgeo_1038 hypothetical protein; SPTR: Alpha/beta superfamily hydrolase YP_004170530.1 InterPro IPR002656; KEGG: ddr:Deide_10950 acyltransferase; PFAM: Acyltransferase 3; SPTR: acyltransferase; PFAM: Acyltransferase family YP_004170531.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092: IPR006091: IPR006090; KEGG: ddr:Deide_2p02090 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; SPTR: acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase N terminal; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_004170532.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: ddr:Deide_2p02080 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold YP_004170533.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dge:Dgeo_2403 gluconate 5-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-ACP reductase; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004170534.1 COGs: COG2030 Acyl dehydratase; InterPro IPR002539; KEGG: dge:Dgeo_2402 MaoC-like dehydratase; PFAM: MaoC-like dehydratase; PRIAM: enoyl-CoA hydratase; SPTR: MaoC-like protein dehydratase; PFAM: MaoC like domain YP_004170535.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092: IPR006091: IPR006090; KEGG: dge:Dgeo_2399 acyl-CoA dehydrogenase-like; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase-like protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_004170536.1 COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: ddr:Deide_2p01970 short-chain alcohol dehydrogenase, precursor; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: short-chain alcohol dehydrogenase,; PFAM: short chain dehydrogenase YP_004170537.1 COGs: COG3173 aminoglycoside phosphotransferase; InterPro IPR002575; KEGG: dge:Dgeo_2397 aminoglycoside phosphotransferase; PFAM: Aminoglycoside phosphotransferase; SPTR: Aminoglycoside phosphotransferase; PFAM: Phosphotransferase enzyme family YP_004170538.1 COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: dra:DR_A0193 phosphoglycerate mutase-related protein; PFAM: histidine phosphatase superfamily, clade-1; SMART: histidine phosphatase superfamily, clade-1; SPTR: Phosphoglycerate mutase-related protein; manually curated; PFAM: Phosphoglycerate mutase family YP_004170539.1 COGs: COG0657 Esterase/lipase; InterPro IPR013094; KEGG: dge:Dgeo_2517 alpha/beta hydrolase fold-3; SPTR: Alpha/beta hydrolase fold-3; PFAM: alpha/beta hydrolase fold YP_004170540.1 COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006963: IPR006656: IPR006657; KEGG: hau:Haur_2925 molydopterin dinucleotide-binding region; PFAM: Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase, Fe4S4 domain; Molybdopterin oxidoreductase; PRIAM: Nitrate reductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain; SPTR: Molydopterin dinucleotide-binding region; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain YP_004170541.1 InterPro IPR011701; KEGG: dge:Dgeo_2641 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Bacterial protein of unknown function (DUF894) YP_004170542.1 KEGG: jan:Jann_2763 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; SPTR: integron gene cassette protein YP_004170543.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092: IPR006091: IPR006090; KEGG: dge:Dgeo_0105 acyl-CoA dehydrogenase-like protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase-like protein; PFAM: Acyl-CoA dehydrogenase N terminal; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_004170544.1 KEGG: dge:Dgeo_1400 hypothetical protein; SPTR: uncharacterized protein YP_004170545.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR023210; KEGG: ddr:Deide_1p00480 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain; SPTR: aldo/keto reductase; PFAM: Aldo/keto reductase family YP_004170546.1 InterPro IPR001867; KEGG: dge:Dgeo_2645 SARP family transcriptional regulator; PFAM: Signal transduction response regulator, C-terminal; SPTR: Transcriptional regulator, SARP family YP_004170547.1 InterPro IPR000160; KEGG: dac:Daci_4491 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; SPTR: uncharacterized protein YP_004170548.1 KEGG: ddr:Deide_07850 hypothetical protein; SPTR: uncharacterized protein YP_004170549.1 KEGG: dra:DR_2593 hypothetical protein; SPTR: uncharacterized protein YP_004170550.1 COGs: COG1166 Arginine decarboxylase (spermidine biosynthesis); HAMAP: Arginine decarboxylase; InterPro IPR002985: IPR022644: IPR022643; KEGG: dge:Dgeo_1771 arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal; PRIAM: Arginine decarboxylase; SPTR: Arginine decarboxylase; TIGRFAM: Arginine decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: arginine decarboxylase, biosynthetic YP_004170551.1 KEGG: bfo:BRAFLDRAFT_118602 hypothetical protein; SPTR: uncharacterized protein YP_004170552.1 KEGG: sds:SDEG_0210 ABC transporter, ATP-binding protein; SPTR: uncharacterized protein YP_004170553.1 COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR010280; KEGG: ddr:Deide_04430 (uracil-5)-methyltransferase; PFAM: (uracil-5)-methyltransferase; SPTR: (uracil-5)-methyltransferase; PFAM: tRNA (uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA YP_004170554.1 KEGG: dge:Dgeo_1778 hypothetical protein; SPTR: uncharacterized protein YP_004170555.1 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638: IPR001320; KEGG: dge:Dgeo_1986 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor; SPTR: ABC-type amino acid transport/signal transduction system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_004170556.1 COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR010065: IPR000515; KEGG: dge:Dgeo_1987 amino acid ABC transporter permease; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type amino acid transport system, permease component; TIGRFAM: Amino acid ABC transporter, permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family YP_004170557.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712: IPR003594; KEGG: tra:Trad_2509 integral membrane sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SPTR: Integral membrane sensor signal transduction histidine kinase; PFAM: histidine kinase; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004170558.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789: IPR000792; KEGG: xop:PXO_04459 two-component system regulatory protein; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR: Two-component system regulatory protein; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004170559.1 COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR000150: IPR006379: IPR013200; KEGG: ddr:Deide_04440 hypothetical protein; PFAM: HAD superfamily hydrolase-like, type 3; SPTR: uncharacterized protein; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB YP_004170560.1 COGs: COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); HAMAP: Holo-ACP synthase; InterPro IPR004568: IPR008278: IPR002582; KEGG: dge:Dgeo_1927 4'-phosphopantetheinyl transferase; PFAM: 4'-phosphopantetheinyl transferase; SPTR: Holo-ACP synthase; TIGRFAM: Phosphopantethiene-protein transferase; PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantethiene--protein transferase domain; holo-ACP synthase YP_004170561.1 COGs: COG2361 conserved hypothetical protein; InterPro IPR002934: IPR008201; KEGG: dra:DR_0248 hypothetical protein; PFAM: Protein of unknown function DUF86; Nucleotidyl transferase domain; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF86; Nucleotidyltransferase domain YP_004170562.1 COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR010089: IPR008254; KEGG: dge:Dgeo_1878 flavodoxin/nitric oxide synthase; PFAM: Flavodoxin/nitric oxide synthase; SPTR: Flavodoxin/nitric oxide synthase; TIGRFAM: Flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; TIGRFAM: NAD(P)H:quinone oxidoreductase, type IV YP_004170563.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: fri:FraEuI1c_3293 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase/phosphodiesterase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004170564.1 InterPro IPR011717: IPR003593: IPR019734; KEGG: msv:Mesil_3477 hypothetical protein; SMART: ATPase, AAA+ type, core; Tetratricopeptide repeat; SPTR: uncharacterized protein YP_004170565.1 KEGG: mar:MAE_24020 hypothetical protein; SPTR: uncharacterized protein YP_004170566.1 COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014730; KEGG: dge:Dgeo_0719 electron transfer flavoprotein beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein beta-subunit; PFAM: Electron transfer flavoprotein domain YP_004170567.1 COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014730: IPR014731; KEGG: dra:DR_0970 electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain YP_004170568.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160: IPR019734; KEGG: dge:Dgeo_0380 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; Tetratricopeptide repeat; SPTR: Diguanylate cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004170569.1 InterPro IPR005358; KEGG: ddr:Deide_11910 hypothetical protein; PFAM: Uncharacterised protein family UPF0153; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153) YP_004170570.1 COGs: COG2206 HD-GYP domain; InterPro IPR006675: IPR006674: IPR003607; KEGG: dge:Dgeo_1298 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Metal dependent phosphohydrolase; TIGRFAM: Uncharacterised protein family HDIG; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_004170571.1 InterPro IPR002575; KEGG: dra:DR_1564 hypothetical protein; PFAM: Aminoglycoside phosphotransferase; SPTR: uncharacterized protein; PFAM: Phosphotransferase enzyme family YP_004170572.1 COGs: COG0035 uracil phosphoribosyltransferase; InterPro IPR005765: IPR000836; KEGG: dra:DR_1563 uracil phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; SPTR: uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyl transferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase YP_004170573.1 KEGG: dra:DR_1172 hypothetical protein; SPTR: Protein DR_1172 YP_004170574.1 KEGG: dge:Dgeo_1472 hypothetical protein; SPTR: uncharacterized protein YP_004170575.1 COGs: COG4371 membrane protein; KEGG: dge:Dgeo_1471 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1517) YP_004170576.1 COGs: COG1278 Cold shock protein; InterPro IPR002059: IPR011129; KEGG: ddr:Deide_3p00840 cold shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: cold shock protein; PFAM: 'Cold-shock' DNA-binding domain YP_004170577.1 COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein; InterPro IPR003760; KEGG: ddr:Deide_3p01980 basic membrane lipoprotein, precursor; PFAM: Basic membrane lipoprotein; SPTR: basic membrane lipoprotein,; PFAM: Basic membrane protein YP_004170578.1 COGs: COG2224 isocitrate lyase; InterPro IPR006254: IPR000918; KEGG: dge:Dgeo_1287 isocitrate lyase; PFAM: isocitrate lyase/phosphorylmutase; PRIAM: isocitrate lyase; SPTR: isocitrate lyase; TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase family; TIGRFAM: isocitrate lyase YP_004170579.1 COGs: COG2225 Malate synthase; InterPro IPR006252: IPR001465; KEGG: ddr:Deide_11990 malate synthase; PFAM: Malate synthase; PRIAM: Malate synthase; SPTR: Malate synthase; TIGRFAM: Malate synthase A; PFAM: Malate synthase; TIGRFAM: malate synthase A YP_004170580.1 KEGG: dge:Dgeo_0876 tetratricopeptide TPR_2; SPTR: P-loop ATPase, LuxR family containing TPR repeats; manually curated YP_004170581.1 KEGG: dge:Dgeo_0875 hypothetical protein; SPTR: Uncharacterized secreted protein containing TPR-like repeats YP_004170582.1 KEGG: ser:SERP1011 cell wall associated fibronectin-binding protein; SPTR: type III secretion apparatus needle protein YP_004170583.1 COGs: COG3903 ATPase; InterPro IPR019734; KEGG: msv:Mesil_3477 hypothetical protein; SPTR: uncharacterized protein; PFAM: NB-ARC domain YP_004170584.1 KEGG: ccb:Clocel_3181 M6 family metalloprotease domain-containing protein; SPTR: Hypothetical membrane protein YP_004170585.1 COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: dge:Dgeo_1293 diacylglycerol kinase, catalytic region; PFAM: Diacylglycerol kinase, catalytic domain; SMART: Diacylglycerol kinase, catalytic domain; SPTR: Diacylglycerol kinase, catalytic region; manually curated; PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family YP_004170586.1 COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: dge:Dgeo_1294 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase YP_004170587.1 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR000715; KEGG: dge:Dgeo_1295 glycosyl transferase; PFAM: Glycosyl transferase, family 4; SPTR: Glycosyl transferase, family 4; PFAM: Glycosyl transferase family 4 YP_004170588.1 KEGG: fri:FraEuI1c_7091 oxidoreductase domain protein; SPTR: Chromosome 07 contig 1, DNA sequence YP_004170589.1 COGs: COG3871 Uncharacterized stress protein (general stress protein 26); InterPro IPR011576; KEGG: dge:Dgeo_0891 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SPTR: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding, Gsp26; PFAM: Pyridoxamine 5'-phosphate oxidase YP_004170590.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: saq:Sare_0635 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-ACP reductase; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004170591.1 COGs: COG3387 Glucoamylase and related glycosyl hydrolase; InterPro IPR011613; KEGG: tbd:Tbd_0923 hypothetical protein; PFAM: Glycoside hydrolase 15-related; SPTR: uncharacterized protein; PFAM: Glycosyl hydrolases family 15 YP_004170592.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: dge:Dgeo_0892 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily YP_004170593.1 COGs: COG0516 IMP dehydrogenase/GMP reductase; InterPro IPR005990: IPR001093: IPR000644; KEGG: dge:Dgeo_0548 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core; PRIAM: IMP dehydrogenase; SMART: Cystathionine beta-synthase, core; SPTR: Inosine-5'-monophosphate dehydrogenase; TIGRFAM: IMP dehydrogenase; PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase YP_004170594.1 COGs: COG1272 membrane protein hemolysin III homolog; InterPro IPR005744: IPR004254; KEGG: dge:Dgeo_0549 hemolysin III family channel protein; PFAM: Hly-III-related; SPTR: Channel protein, hemolysin III family; TIGRFAM: HylII; PFAM: Haemolysin-III related; TIGRFAM: channel protein, hemolysin III family YP_004170595.1 COGs: COG1994 Zn-dependent protease; InterPro IPR008915; KEGG: ddr:Deide_06230 hypothetical protein; PFAM: Peptidase M50; SPTR: uncharacterized protein; PFAM: Peptidase family M50 YP_004170596.1 KEGG: mrb:Mrub_1364 hypothetical protein; SPTR: uncharacterized protein; PFAM: Peptidase family M50 YP_004170597.1 COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646; KEGG: dge:Dgeo_0551 polynucleotide adenylyltransferase region; PFAM: Poly A polymerase, head domain; SPTR: tRNA nucleotidyltransferase, Cca; PFAM: CBS domain; Poly A polymerase head domain YP_004170598.1 COGs: COG0265 trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254: IPR001478; KEGG: dge:Dgeo_0552 peptidase S1 and S6, chymotrypsin/Hap; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: Peptidase S1 and S6, chymotrypsin/Hap; PFAM: trypsin YP_004170599.1 COGs: COG3426 Butyrate kinase; InterPro IPR000890; KEGG: dge:Dgeo_1383 butyrate kinase; PFAM: Acetate/butyrate kinase; PRIAM: Butyrate kinase; SPTR: Acetate and butyrate kinase; PFAM: Acetokinase family; TIGRFAM: butyrate kinase YP_004170600.1 COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544; KEGG: dge:Dgeo_0497 hypothetical protein; PFAM: Aminotransferase, class IV; SPTR: Branched-chain amino acid aminotransferase related enzyme; PFAM: Aminotransferase class IV YP_004170601.1 COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR006221: IPR006805: IPR015890: IPR000991; KEGG: dge:Dgeo_0498 glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: Anthranilate synthase; SPTR: Glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; TIGRFAM: Anthranilate synthase, glutamine amidotransferase domain; PFAM: Glutamine amidotransferase class-I; chorismate binding enzyme; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase YP_004170602.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789: IPR000792; KEGG: dge:Dgeo_0555 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004170603.1 COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR006402: IPR005834; KEGG: dge:Dgeo_1288 HAD family hydrolase; PFAM: haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED YP_004170604.1 KEGG: dge:Dgeo_0879 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3208) YP_004170605.1 KEGG: ddr:Deide_11810 hypothetical protein; SPTR: uncharacterized protein YP_004170606.1 InterPro IPR002818; KEGG: ddr:Deide_11801 hypothetical protein; PFAM: ThiJ/PfpI; SPTR: uncharacterized protein; PFAM: DJ-1/PfpI family YP_004170607.1 KEGG: dge:Dgeo_0881 hypothetical protein; SPTR: uncharacterized protein YP_004170608.1 COGs: COG0789 transcriptional regulator protein; InterPro IPR000551: IPR015358; KEGG: ddr:Deide_3p02530 transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; Transcription regulator MerR, DNA binding; SMART: HTH transcriptional regulator, MerR; SPTR: Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein; MerR, DNA binding YP_004170609.1 COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: ddr:Deide_3p02540 Zn-dependent hydrolases of the beta-lactamase fold protein; SPTR: Zn-dependent hydrolases of the beta-lactamase fold protein YP_004170610.1 COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR005790: IPR010372; KEGG: dge:Dgeo_0745 DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; SPTR: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit YP_004170611.1 COGs: COG0515 Serine/threonine protein kinase; InterPro IPR017442: IPR002290: IPR020635; KEGG: dge:Dgeo_0744 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; tyrosine-protein kinase, catalytic domain; SPTR: Serine/threonine protein kinase; PFAM: Protein kinase domain YP_004170612.1 COGs: COG0113 Delta-aminolevulinic acid dehydratase; InterPro IPR001731; KEGG: dra:DR_2160 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; PRIAM: porphobilinogen synthase; SPTR: Delta-aminolevulinic acid dehydratase; PFAM: Delta-aminolevulinic acid dehydratase YP_004170613.1 KEGG: dge:Dgeo_0885 hypothetical protein; SPTR: uncharacterized protein YP_004170614.1 COGs: COG2124 Cytochrome P450; InterPro IPR001128; KEGG: dra:DR_1723 cytochrome P450; PFAM: Cytochrome P450; SPTR: Cytochrome P450; PFAM: Cytochrome P450 YP_004170615.1 COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterPro IPR004489; KEGG: dge:Dgeo_0886 succinate dehydrogenase iron-sulfur subunit; PRIAM: Succinate dehydrogenase; SPTR: Succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_004170616.1 COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR011281: IPR014006: IPR003953: IPR004112; KEGG: ddr:Deide_12450 succinate dehydrogenase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; PRIAM: Succinate dehydrogenase (ubiquinone); SPTR: Succinate dehydrogenase, flavoprotein subunit; TIGRFAM: Succinate dehydrogenase, flavoprotein subunit; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup; succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup YP_004170617.1 COGs: COG2142 Succinate dehydrogenase hydrophobic anchor subunit; InterPro IPR000701; KEGG: dge:Dgeo_0888 succinate dehydrogenase, cytochrome b subunit; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit; SPTR: Succinate dehydrogenase, cytochrome b subunit; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit YP_004170618.1 InterPro IPR014314; KEGG: dge:Dgeo_0889 succinate dehydrogenase, cytochrome b subunit; SPTR: Succinate dehydrogenase, cytochrome b subunit; TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit YP_004170619.1 InterPro IPR003826; KEGG: mrb:Mrub_2528 S-adenosylmethionine decarboxylase-like protein; PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal; SPTR: S-adenosylmethionine decarboxylase related protein; PFAM: S-adenosylmethionine decarboxylase YP_004170620.1 COGs: COG0515 Serine/threonine protein kinase; InterPro IPR017442: IPR001258: IPR002290: IPR020635; KEGG: ddr:Deide_13750 serine/threonine protein kinase; membrane protein; PFAM: Serine/threonine-protein kinase-like domain; NHL repeat; PRIAM: Calcium/calmodulin-dependent protein kinase; SMART: Serine/threonine-protein kinase domain; tyrosine-protein kinase, catalytic domain; SPTR: Serine/threonine protein kinase; membrane protein; PFAM: Protein kinase domain YP_004170621.1 KEGG: dge:Dgeo_0727 hypothetical protein; SPTR: uncharacterized protein YP_004170622.1 KEGG: dge:Dgeo_1393 hypothetical protein; SPTR: uncharacterized protein YP_004170623.1 COGs: COG0606 ATPase with chaperone activity; InterPro IPR004482: IPR000523: IPR003593; KEGG: dge:Dgeo_1394 Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; SMART: ATPase, AAA+ type, core; SPTR: Mg chelatase-related protein; TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein YP_004170624.1 COGs: COG0666 FOG: Ankyrin repeat; InterPro IPR002110; KEGG: ddr:Deide_01850 ankyrin repeat protein; PFAM: Ankyrin repeat; SMART: Ankyrin repeat; SPTR: Ankyrin domain protein; PFAM: Ankyrin repeat YP_004170625.1 COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: dge:Dgeo_2482 DedA protein; PFAM: SNARE associated Golgi protein; SPTR: DedA protein; PFAM: SNARE associated Golgi protein YP_004170626.1 COGs: COG1826 Sec-independent protein secretion pathway components; HAMAP: Twin-arginine translocation protein TatA/E; InterPro IPR006312: IPR003369; KEGG: dge:Dgeo_1396 twin arginine-targeting protein translocase; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106; SPTR: Sec-independent protein translocase tatA/E homolog 2; TIGRFAM: Twin-arginine translocation protein TatA/E; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family YP_004170627.1 COGs: COG0515 Serine/threonine protein kinase; InterProIPR017442: IPR002372: IPR002290: IPR020635: IPR 018391; KEGG: dge:Dgeo_1397 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; Pyrrolo-quinoline quinone repeat; PRIAM: Calcium/calmodulin-dependent protein kinase; SMART: Serine/threonine-protein kinase domain; tyrosine-protein kinase, catalytic domain; Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Serine/threonine protein kinase; PFAM: Protein kinase domain; PQQ enzyme repeat YP_004170628.1 KEGG: dra:DR_1872 hypothetical protein; SPTR: uncharacterized protein YP_004170629.1 COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; InterPro IPR005750: IPR001986; KEGG: dge:Dgeo_1386 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: Enolpyruvate transferase domain; PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; SPTR: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_004170630.1 KEGG: dge:Dgeo_1950 hypothetical protein; SPTR: Protein containing PATAN domain YP_004170631.1 InterPro IPR000297; KEGG: ddr:Deide_07110 PpiC-type peptidyl-prolyl cis-trans isomerase precursor; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PPIC-type PPIASE domain YP_004170632.1 KEGG: dge:Dgeo_1600 hypothetical protein; SPTR: Predicted phosphosugar isomerase YP_004170634.1 COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: dra:DR_0961 ribosomal large subunit pseudouridine synthase A; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: ribosomal large subunit pseudouridine synthase, Rlu family; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family YP_004170635.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789; KEGG: dge:Dgeo_1899 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain YP_004170636.1 COGs: COG1278 Cold shock protein; InterPro IPR002059: IPR011129; KEGG: dge:Dgeo_0638 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein; PFAM: 'Cold-shock' DNA-binding domain YP_004170637.1 COGs: COG1801 conserved hypothetical protein; InterPro IPR002763; KEGG: dge:Dgeo_1898 hypothetical protein; PFAM: Protein of unknown function DUF72; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF72 YP_004170638.1 KEGG: cms:CMS_1818 ribonuclease YP_004170639.1 COGs: COG1526 Uncharacterized protein required for formate dehydrogenase activity; HAMAP: formate dehydrogenase, subunit FdhD; InterPro IPR003786; KEGG: ddr:Deide_2p01500 formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase, subunit FdhD; SPTR: Protein fdhD homolog; TIGRFAM: formate dehydrogenase, subunit FdhD; PFAM: FdhD/NarQ family; TIGRFAM: formate dehydrogenase family accessory protein FdhD YP_004170640.1 InterPro IPR012440; KEGG: dge:Dgeo_2745 hypothetical protein; PFAM: Protein of unknown function DUF1641; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1641) YP_004170641.1 COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterProIPR006478: IPR001041: IPR019574: IPR001450: IPR 006963: IPR006656: IPR006657; KEGG: dge:Dgeo_2746 formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; 4Fe-4S binding domain; Molydopterin dinucleotide-binding domain; SMART: Molybdopterin oxidoreductase, Fe4S4 domain; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; SPTR: formate dehydrogenase, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: formate dehydrogenase, alpha subunit, archaeal-type YP_004170642.1 COGs: COG4988 ABC-type transport system involved in cytochrome bd biosynthesis ATPase and permease components; InterPro IPR001140: IPR003439: IPR003593; KEGG: dge:Dgeo_2707 ABC transporter-related protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type transport system for cytochrome bd biosynthesis, ATPase and permease component; PFAM: ABC transporter; ABC transporter transmembrane region; TIGRFAM: thiol reductant ABC exporter, CydD subunit YP_004170643.1 COGs: COG4987 ABC-type transport system involved in cytochrome bd biosynthesis fused ATPase and permease components; InterPro IPR014223: IPR003439: IPR003593; KEGG: dge:Dgeo_2706 ABC transporter-related protein; PFAM: ABC transporter-like; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type transport system for cytochrome bd biosynthesis, ATPase and permease component; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter; TIGRFAM: thiol reductant ABC exporter, CydC subunit YP_004170644.1 COGs: COG1271 Cytochrome bd-type quinol oxidase subunit 1; InterPro IPR002585; KEGG: dge:Dgeo_2705 cytochrome bd ubiquinol oxidase, subunit I; PFAM: Cytochrome d ubiquinol oxidase, subunit I; SPTR: Cytochrome bd ubiquinol oxidase, subunit I; PFAM: Bacterial Cytochrome Ubiquinol Oxidase YP_004170645.1 COGs: COG1294 Cytochrome bd-type quinol oxidase subunit 2; InterPro IPR003317; KEGG: dge:Dgeo_2704 cytochrome d ubiquinol oxidase, subunit II; PFAM: Cytochrome d ubiquinol oxidase, subunit II; SPTR: Cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome d ubiquinol oxidase, subunit II; PFAM: Cytochrome oxidase subunit II; TIGRFAM: cytochrome d oxidase, subunit II (cydB) YP_004170646.1 COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; InterPro IPR000644; KEGG: dge:Dgeo_2080 signal-transduction protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; SPTR: signal-transduction protein containing CBS domains; PFAM: CBS domain YP_004170647.1 COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: ddr:Deide_14230 polyprenyl synthetase; PFAM: Polyprenyl synthetase; PRIAM: Geranyltranstransferase; SPTR: Geranylgeranyl diphosphate synthase; PFAM: Polyprenyl synthetase YP_004170648.1 KEGG: rer:RER_32430 ABC transporter substrate-binding protein; SPTR: ABC transporter substrate-binding protein YP_004170649.1 COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR004733: IPR000728: IPR010918; KEGG: dra:DR_1394 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase; SPTR: Phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase YP_004170650.1 COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: dge:Dgeo_1615 phosphoglycerate mutase; PFAM: histidine phosphatase superfamily, clade-1; SMART: histidine phosphatase superfamily, clade-1; SPTR: Phosphoglycerate mutase; PFAM: Phosphoglycerate mutase family YP_004170651.1 COGs: COG1703 periplasmic protein kinase ArgK and related GTPase of G3E family; InterPro IPR005129: IPR003593; KEGG: dra:DR_1747 LAO/AO transport system kinase; PFAM: ArgK protein; SMART: ATPase, AAA+ type, core; SPTR: LAO/AO transport system kinase; TIGRFAM: ArgK protein; PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase YP_004170652.1 KEGG: ddr:Deide_18240 hypothetical protein; membrane protein; SPTR: uncharacterized protein YP_004170653.1 KEGG: dge:Dgeo_1382 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004170654.1 COGs: COG2185 Methylmalonyl-CoA mutase C-terminal domain/subunit (cobalamin-binding); InterPro IPR006159: IPR006158; KEGG: dge:Dgeo_1541 methylmalonyl-CoA mutase, alpha subunit; PFAM: Cobalamin (vitamin B12)-binding; SPTR: Methylmalonyl-CoA mutase, alpha subunit; TIGRFAM: Methylmalonyl-CoA mutase, C-terminal; PFAM: B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain YP_004170655.1 COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667; KEGG: ddr:Deide_19370 D-Ala-D-Ala carboxypeptidase; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; SPTR: D-Ala-D-Ala carboxypeptidase; TIGRFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family YP_004170656.1 COGs: COG0180 tryptophanyl-tRNA synthetase; InterPro IPR002306: IPR002305; KEGG: dge:Dgeo_1602 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: tryptophan--tRNA ligase; SPTR: tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase, class Ib; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase YP_004170657.1 COGs: COG1354 conserved hypothetical protein; KEGG: dge:Dgeo_1603 hypothetical protein; SPTR: uncharacterized protein YP_004170658.1 COGs: COG0517 FOG: CBS domain; InterPro IPR000644; KEGG: dge:Dgeo_0714 signal transduction protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; SPTR: signal transduction protein with CBS domains; PFAM: CBS domain YP_004170659.1 InterPro IPR005632; KEGG: dge:Dgeo_0715 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SMART: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like) YP_004170660.1 InterPro IPR005632; KEGG: dra:DR_0988 hypothetical protein; PFAM: Outer membrane chaperone Skp (OmpH); SMART: Outer membrane chaperone Skp (OmpH); SPTR: uncharacterized protein; PFAM: Outer membrane protein (OmpH-like) YP_004170661.1 COGs: COG0548 Acetylglutamate kinase; InterPro IPR004662: IPR001048; KEGG: ddr:Deide_10430 acetylglutamate/acetylaminoadipate kinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: Acetylglutamate kinase; SPTR: acetylglutamate kinase; TIGRFAM: Acetylglutamate kinase; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase YP_004170662.1 InterPro IPR001087; KEGG: rmr:Rmar_0133 hypothetical protein; PFAM: lipase, GDSL; SPTR: uncharacterized protein; PFAM: GDSL-like lipase/Acylhydrolase YP_004170663.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789; KEGG: dge:Dgeo_0684 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain YP_004170664.1 COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase, type 1; InterPro IPR000706: IPR000534: IPR012280; KEGG: dge:Dgeo_0685 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation domain; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SMART: Semialdehyde dehydrogenase, NAD-binding; SPTR:N-acetyl-gamma-glutamyl-phosphate/N-acetyl- gamma-aminoadipyl- phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, type 1; PFAM: Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form YP_004170665.1 COGs: COG0189 Glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR004666: IPR011870: IPR013651; KEGG: ddr:Deide_13430 ribosomal protein S6 modification protein RimK; lysine biosynthesis protein LysX; PFAM: ATP-grasp fold, RimK-type; SPTR: ribosomal protein S6 modification protein RimK; Lysine biosynthesis protein lysX; TIGRFAM: Lysine biosynthesis enzyme LysX; S6 modification enzyme RimK; PFAM: RimK-like ATP-grasp domain; TIGRFAM: Lysine biosynthesis enzyme LysX; alpha-L-glutamate ligases, RimK family YP_004170666.1 InterPro IPR005906; KEGG: ddr:Deide_13440 lysine biosynthesis protein LysW; SPTR: Lysine biosynthesis protein LysW; TIGRFAM: Lysine biosynthesis protein LysW; TIGRFAM: lysine biosynthesis protein LysW YP_004170667.1 InterPro IPR007872; KEGG: ddr:Deide_13450 zinc finger motif protein; SPTR: zinc finger motif protein YP_004170668.1 COGs: COG0066 3-isopropylmalate dehydratase small subunit; InterPro IPR011827: IPR000573; KEGG: dge:Dgeo_1154 3-isopropylmalate dehydratase small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; SPTR: Lysine biosynthesis protein, homoaconitate hydratase; TIGRFAM: 3-isopropylmalate dehydratase, small subunit, subgroup; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit YP_004170669.1 KEGG: xce:Xcel_0352 oxidoreductase domain protein YP_004170670.1 COGs: COG0065 3-isopropylmalate dehydratase large subunit; HAMAP: homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic; InterPro IPR011826: IPR006251: IPR001030; KEGG: ddr:Deide_13470 3-isopropylmalate dehydratase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; PRIAM: homoaconitate hydratase; SPTR: 3-isopropylmalate dehydratase large subunit 2; TIGRFAM: homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup; homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic; PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit; homoaconitate hydratase YP_004170671.1 COGs: COG3135 Uncharacterized protein involved in benzoate metabolism; InterPro IPR004711; KEGG: ddr:Deide_14000 benzoate membrane transport protein (benzoate transporter); PFAM: Benzoate membrane transport protein; SPTR: Benzoate membrane transport protein (Benzoate transporter); TIGRFAM: Benzoate membrane transport protein; PFAM: Benzoate membrane transport protein; TIGRFAM: benzoate transporter YP_004170672.1 COGs: COG0384 epimerase PhzC/PhzF homolog; InterPro IPR003719; KEGG: dge:Dgeo_1258 hypothetical protein; PFAM: phenazine biosynthesis PhzC/PhzF protein; SPTR: uncharacterized protein; PFAM: phenazine biosynthesis-like protein; TIGRFAM: phenazine biosynthesis protein PhzF family YP_004170673.1 COGs: COG0119 isopropylmalate/homocitrate/citramalate synthase; InterPro IPR011872: IPR000891; KEGG: ddr:Deide_13980 homocitrate synthase; PFAM: Pyruvate carboxyltransferase; PRIAM: homocitrate synthase; SPTR: homocitrate synthase; TIGRFAM: homocitrate synthase, fungi/archaea; PFAM: HMGL-like; TIGRFAM: homocitrate synthase YP_004170674.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR023210; KEGG: ddr:Deide_09990 oxidoreductase; PFAM: NADP-dependent oxidoreductase domain; SPTR: oxidoreductase; PFAM: Aldo/keto reductase family YP_004170675.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160: IPR007891: IPR003660; KEGG: ddr:Deide_18070 diguanylate-cyclase; PFAM: Diguanylate cyclase, predicted; HAMP linker domain; CHASE3; SMART: Diguanylate cyclase, predicted; HAMP linker domain; SPTR: diguanylate-cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: HAMP domain; GGDEF domain; CHASE3 domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004170676.1 KEGG: dra:DR_0877 hypothetical protein; SPTR: uncharacterized protein YP_004170677.1 COGs: COG0738 Fucose permease; InterPro IPR011701; KEGG: ddr:Deide_03650 major facilitator superfamily MFS-1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS-1; PFAM: Major Facilitator Superfamily YP_004170678.1 KEGG: bbe:BBR47_37570 hypothetical protein; SPTR: uncharacterized protein; PFAM: Mycothiol maleylpyruvate isomerase N-terminal domain YP_004170679.1 COGs: COG1802 Transcriptional regulators; InterPro IPR000524: IPR011711; KEGG: ddr:Deide_13830 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal; SPTR: Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain YP_004170680.1 COGs: COG0506 Proline dehydrogenase; InterPro IPR002872; KEGG: ddr:Deide_13840 proline dehydrogenase; PFAM: Proline dehydrogenase; PRIAM: Proline dehydrogenase; SPTR: Proline dehydrogenase; PFAM: Proline dehydrogenase YP_004170681.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR005932: IPR015590; KEGG: ddr:Deide_13850 1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase domain; PRIAM: 1-pyrroline-5-carboxylate dehydrogenase; SPTR: 1-pyrroline-5-carboxylate dehydrogenase; aldehyde dehydrogenase; TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 2; PFAM: Aldehyde dehydrogenase family; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase, group 2 YP_004170682.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR010259: IPR000209: IPR003137; KEGG: dra:DR_0812 serine protease; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Proteinase inhibitor I9, subtilisin propeptide; Protease-associated domain, PA; PRIAM: Subtilisin; SPTR: Serine protease, subtilase family; PFAM: PA domain; Subtilase family YP_004170683.1 COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase; HAMAP: Phosphoribosyl-ATP pyrophosphohydrolase; histidine biosynthesis bifunctional protein HisIE; InterPro IPR008179: IPR002496: IPR021130: IPR023019; KEGG: dra:DR_0733 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase; PFAM: Phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase-like; PRIAM: Phosphoribosyl-AMP cyclohydrolase., Phosphoribosyl-ATP diphosphatase; SPTR: histidine biosynthesis bifunctional protein hisIE; TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase YP_004170684.1 COGs: COG0107 imidazoleglycerol-phosphate synthase; HAMAP: histidine biosynthesis, HisF; InterPro IPR004651: IPR006062; KEGG: dge:Dgeo_1900 imidazole glycerol phosphate synthase subunit HisF; PFAM: histidine biosynthesis; SPTR: imidazole glycerol phosphate synthase subunit hisF; TIGRFAM: histidine biosynthesis, HisF; PFAM: histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit YP_004170685.1 COGs: COG0226 ABC-type phosphate transport system periplasmic component; InterPro IPR005673: IPR006059; KEGG: ddr:Deide_2p01880 phosphate ABC transporter, periplasmic component, PstS; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: phosphate ABC transporter, periplasmic component, PstS; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: phosphate ABC transporter, phosphate-binding protein YP_004170686.1 COGs: COG1346 effector of murein hydrolase; InterPro IPR007300; KEGG: dge:Dgeo_0774 LrgB-like protein protein; PFAM: LrgB-like protein; SPTR: LrgB-like protein; PFAM: LrgB-like family YP_004170687.1 COGs: COG1380 effector of murein hydrolase LrgA; InterPro IPR005538; KEGG: ddr:Deide_12940 holin protein LrgA; membrane protein; PFAM: Uncharacterised protein family LrgA/YohJ; SPTR: Holin protein LrgA; membrane protein; PFAM: LrgA family YP_004170688.1 COGs: COG0775 Nucleoside phosphorylase; InterPro IPR010049: IPR000845; KEGG: ddr:Deide_12930 adenosylhomocysteine nucleosidase (MTA/SAH nucleosidase) (5 -methylthioadenosine nucleosidase); PFAM: Nucleoside phosphorylase domain; PRIAM: Adenosylhomocysteine nucleosidase; SPTR: Adenosylhomocysteine nucleosidase (MTA/SAH nucleosidase) (5-methylthioadenosine nucleosidase); TIGRFAM: MTA/SAH nucleosidase; manually curated; PFAM: Phosphorylase superfamily; TIGRFAM: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_004170689.1 COGs: COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; InterPro IPR004839; KEGG: ddr:Deide_12920 aminotransferase; PFAM: Aminotransferase, class I/classII; PRIAM: Cystathionine beta-lyase; SPTR: aminotransferase; PFAM: Aminotransferase class I and II YP_004170690.1 COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: gdj:Gdia_0731 acyltransferase 3; PFAM: Acyltransferase 3; SPTR: O-acetyl transferase; PFAM: Acyltransferase family YP_004170691.1 InterPro IPR000326; KEGG: ddr:Deide_03530 undecaprenyl-diphosphatase YbjG, (undecaprenyl pyrophosphate phosphatase); PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: undecaprenyl-diphosphatase ybjG, (undecaprenyl pyrophosphate phosphatase); PFAM: PAP2 superfamily YP_004170692.1 KEGG: mau:Micau_3936 hypothetical protein; SPTR: 40-residue YVTN family beta-propeller repeat protein YP_004170693.1 COGs: COG0031 Cysteine synthase; InterPro IPR005859: IPR005856: IPR001926; KEGG: dge:Dgeo_1657 cysteine synthase A; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Cysteine synthase; SPTR: Cysteine synthase; TIGRFAM: Cysteine synthase A; Cysteine synthase K/M; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A; cysteine synthases YP_004170694.1 InterPro IPR004843; KEGG: dge:Dgeo_1656 metallophosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_004170695.1 COGs: COG0153 Galactokinase; InterPro IPR000705: IPR019539: IPR006204: IPR013750; KEGG: ddr:Deide_2p02230 galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase, C-terminal; PRIAM: Galactokinase; SPTR: galactokinase; TIGRFAM: Galactokinase; PFAM: Galactokinase galactose-binding signature; GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: galactokinase YP_004170696.1 COGs: COG1085 Galactose-1-phosphate uridylyltransferase; InterPro IPR001937: IPR005849: IPR005850; KEGG: dge:Dgeo_2480 galactose-1-phosphate uridylyltransferase; PFAM: Galactose-1-phosphate uridyl transferase, N-terminal; Galactose-1-phosphate uridyl transferase, C-terminal; PRIAM: UDP-glucose--hexose-1-phosphate uridylyltransferase; SPTR: Galactose-1-phosphate uridylyltransferase; TIGRFAM: Galactose-1-phosphate uridyl transferase, class I; PFAM: Galactose-1-phosphate uridyl transferase, C-terminal domain; Galactose-1-phosphate uridyl transferase, N-terminal domain; TIGRFAM: galactose-1-phosphate uridylyltransferase, family 1 YP_004170697.1 COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: dge:Dgeo_1655 beta-Ig-H3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: Surface protein containing fasciclin-like repeats; PFAM: Fasciclin domain; Equine herpesvirus glycoprotein gp2 YP_004170698.1 COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543: IPR018541: IPR003593; KEGG: ddr:Deide_15050 cell division protein FtsK; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma; ATPase, AAA+ type, core; SPTR: Cell division protein FtsK; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family YP_004170699.1 COGs: COG1310 metal-dependent protease of the PAD1/JAB1 superfamily; InterPro IPR000555; KEGG: dge:Dgeo_1653 Mov34/MPN/PAD-1; SMART: Mov34/MPN/PAD-1; SPTR: Predicted metal-dependent protease, Mov34/MPN/PAD-1; PFAM: Mov34/MPN/PAD-1 family YP_004170700.1 COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR018392: IPR000064: IPR002482; KEGG: ddr:Deide_17990 NLP/P60, precursor; PFAM: NLP/P60; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: NLP/P60,; PFAM: NlpC/P60 family; LysM domain YP_004170701.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: lch:Lcho_1330 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin; PFAM: Subtilase family YP_004170702.1 KEGG: ath:AT1G79280 NUA (NUCLEAR porE ANCHOR); SPTR: Nuclear-pore anchor YP_004170703.1 COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR017730: IPR004176: IPR003959: IPR013093: IPR 019489: IPR003593; KEGG: dge:Dgeo_1210 ATPase AAA-2; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATPase AAA-2; TIGRFAM: Chaperonin ClpB; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB YP_004170704.1 COGs: COG1285 membrane protein; InterPro IPR003416; KEGG: dra:DR_0816 Mg(2+) transport ATPase-related protein; PFAM: MgtC/SapB transporter; SPTR: Mg(2+) transport ATPase-related protein; PFAM: MgtC family YP_004170705.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: bbe:BBR47_57090 hypothetical protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily YP_004170706.1 COGs: COG1494 Fructose-1 6-bisphosphatase/sedoheptulose 1 7-bisphosphatase and related protein; InterPro IPR004464; KEGG: ddr:Deide_07360 fructose 1,6-bisphosphatase II; PFAM: Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase; PRIAM: Fructose-bisphosphatase; SPTR: Fructose-bisphosphatase; TIGRFAM: Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase; PFAM: Bacterial fructose-1,6-bisphosphatase, glpX-encoded; TIGRFAM: fructose-1,6-bisphosphatase, class II YP_004170707.1 COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR000802; KEGG: ppw:PputW619_1715 arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; SPTR: Arsenical pump membrane protein; PFAM: Arsenical pump membrane protein YP_004170708.1 KEGG: sde:Sde_2416 cation transport ATPase; SPTR: uncharacterized protein YP_004170709.1 COGs: COG0033 Phosphoglucomutase; InterProIPR005852: IPR005844: IPR005845: IPR005846: IPR 005843; KEGG: dge:Dgeo_1875 phosphoglucomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; PRIAM: Phosphoglucomutase; SPTR: Phosphoglucomutase, alpha-D-glucose phosphate-specific; TIGRFAM: Phosphoglucomutase, alpha-D-glucose specific; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific YP_004170710.1 KEGG: dge:Dgeo_1874 hypothetical protein; SPTR: uncharacterized protein YP_004170711.1 COGs: COG2206 HD-GYP domain; InterPro IPR006675: IPR006674: IPR003607; KEGG: dau:Daud_0771 diguanylate cyclase with PAS/PAC sensor; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: Uncharacterised protein family HDIG; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_004170712.1 COGs: COG0622 phosphoesterase; InterPro IPR000979: IPR004843; KEGG: dge:Dgeo_1529 hypothetical protein; PFAM: Metallo-dependent phosphatase; SPTR: Calcineurin-like phosphoesterase; TIGRFAM: Phosphodiesterase MJ0936; TIGRFAM: phosphoesterase, MJ0936 family YP_004170713.1 COGs: COG0563 Adenylate kinase and related kinase; KEGG: dra:DR_0202 hypothetical protein; SPTR: uncharacterized protein YP_004170714.1 COGs: COG0366 Glycosidase; InterPro IPR006047: IPR006589; KEGG: dge:Dgeo_0475 alpha amylase, catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic domain; PRIAM: Neopullulanase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Alpha amylase, catalytic region; PFAM: Alpha amylase, catalytic domain YP_004170716.1 KEGG: ddr:Deide_09120 hypothetical protein; SPTR: uncharacterized protein YP_004170717.1 KEGG: hsa:221 aldehyde dehydrogenase 3 family, member B1; SPTR: ALDH3B1 protein YP_004170718.1 COGs: COG3833 ABC-type maltose transport systems permease component; InterPro IPR000515; KEGG: dge:Dgeo_1502 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type maltose transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004170719.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: dge:Dgeo_1501 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type maltose transport system, permease component, MalF; PFAM: Binding-protein-dependent transport system inner membrane component YP_004170720.1 COGs: COG2182 Maltose-binding periplasmic protein/domains; InterPro IPR006059; KEGG: ddr:Deide_09500 maltose ABC transporter, periplasmic component; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: Maltose ABC transporter, periplasmic component; PFAM: Bacterial extracellular solute-binding protein YP_004170721.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: ddr:Deide_09510 drug efflux permease; membrane protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Drug efflux permease; membrane protein; PFAM: Major Facilitator Superfamily YP_004170722.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR023210; KEGG: ddr:Deide_1p01910 aryl-alcohol dehydrogenase (NADP(+)); PFAM: NADP-dependent oxidoreductase domain; PRIAM: Aryl-alcohol dehydrogenase (NADP(+)); SPTR: aryl-alcohol dehydrogenase (NADP(+)); PFAM: Aldo/keto reductase family YP_004170723.1 COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR002744; KEGG: dra:DR_2165 hypothetical protein; PFAM: Domain of unknown function DUF59; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF59 YP_004170724.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: ddr:Deide_11240 thiosulfate sulfurtransferase (rhodanese); PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: thiosulfate sulfurtransferase (Rhodanese); PFAM: Rhodanese-like domain YP_004170725.1 KEGG: ddr:Deide_11250 rhodanese sulfurtransferase; SPTR: rhodanese sulfurtransferase YP_004170726.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: svi:Svir_31300 acetyltransferase, ribosomal protein N-acetylase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Acetyltransferase, ribosomal protein N-acetylase; PFAM: Acetyltransferase (GNAT) family YP_004170727.1 InterPro IPR000073: IPR013595; KEGG: rrs:RoseRS_0270 TAP domain-containing protein; PFAM: Alpha/beta hydrolase fold-1; Peptidase S33, tripeptidyl-peptidase C-terminal; SPTR: TAP domain protein; PFAM: TAP-like protein; alpha/beta hydrolase fold YP_004170728.1 COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: dge:Dgeo_1278 peptidase U32; PFAM: Peptidase U32; SPTR: Peptidase U32; PFAM: Collagenase; Peptidase family U32 YP_004170729.1 KEGG: pol:Bpro_0728 cytochrome c oxidase subunit III; SPTR: Cytochrome c oxidase subunit III YP_004170730.1 COGs: COG0428 divalent heavy-metal cations transporter; InterPro IPR003689; KEGG: rxy:Rxyl_2825 integral membrane protein; PFAM: Zinc/iron permease; SPTR: integral membrane protein; PFAM: ZIP Zinc transporter YP_004170731.1 COGs: COG2306 conserved hypothetical protein; InterPro IPR007295; KEGG: ddr:Deide_08860 hypothetical protein; PFAM: Domain of unknown function DUF402; SPTR: Predicted RNA-binding protein associated with RNAse G/E; PFAM: Protein of unknown function (DUF402) YP_004170732.1 COGs: COG4565 Response regulator of citrate/malate metabolism; InterPro IPR001789; KEGG: dge:Dgeo_0354 response regulator receiver/unknown domain-containing protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: uncharacterized protein; PFAM: Response regulator receiver domain YP_004170733.1 COGs: COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; InterPro IPR003594; KEGG: dge:Dgeo_0355 signal transduction histidine kinase regulating citrate/malate metabolism; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: Signal transduction histidine kinase regulating citrate/malate metabolism; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004170734.1 COGs: COG1301 Na+/H+-dicarboxylate symporter; HAMAP: C4-dicarboxylate transport protein; InterPro IPR001991; KEGG: dge:Dgeo_0356 sodium:dicarboxylate symporter; PFAM: Sodium:dicarboxylate symporter; SPTR: C4-dicarboxylate transport protein; PFAM: Sodium:dicarboxylate symporter family YP_004170735.1 KEGG: fgr:FG09243.1 hypothetical protein; SPTR: uncharacterized protein YP_004170736.1 COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR003736: IPR006683; KEGG: ddr:Deide_3p01450 PaaI thioesterase; PFAM: Thioesterase superfamily; SPTR: PaaI thioesterase; TIGRFAM: phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1 YP_004170737.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: ddr:Deide_08880 ABC transporter, ATP-binding component; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding component; PFAM: ABC transporter YP_004170738.1 KEGG: ddr:Deide_08890 hypothetical protein; SPTR: uncharacterized protein YP_004170739.1 InterPro IPR011701; KEGG: pna:Pnap_1660 major facilitator superfamily transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily YP_004170740.1 COGs: COG0583 Transcriptional regulator; InterPro IPR000847: IPR005119; KEGG: pna:Pnap_1659 LysR family transcriptional regulator; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain YP_004170741.1 KEGG: fjo:Fjoh_2611 hypothetical protein; SPTR: uncharacterized protein YP_004170742.1 KEGG: dra:DR_1559 hypothetical protein; SPTR: uncharacterized protein YP_004170743.1 COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR006321: IPR001482: IPR003593; KEGG: dra:DR_0442 twitching motility protein; PFAM: Type II secretion system protein E; SMART: ATPase, AAA+ type, core; SPTR: Twitching motility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT YP_004170744.1 KEGG: dge:Dgeo_0936 hypothetical protein; SPTR: uncharacterized protein YP_004170745.1 KEGG: dra:DR_1607 hypothetical protein; SPTR: uncharacterized protein YP_004170746.1 KEGG: ddr:Deide_05350 hypothetical protein; SPTR: uncharacterized protein YP_004170747.1 KEGG: tml:GSTUM_00010612001 hypothetical protein; SPTR: Whole genome shotgun sequence assembly, scaffold_71, strain Mel28 YP_004170748.1 COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; HAMAP: Bacterial DNA recombination protein RuvA; InterPro IPR000085: IPR013849: IPR011114: IPR003583; KEGG: ddr:Deide_09360 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal; SPTR: Holliday junction ATP-dependent DNA helicase ruvA; TIGRFAM: Bacterial DNA recombination protein RuvA; PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit YP_004170749.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR000014: IPR013656: IPR003018: IPR003661: IPR 003594; KEGG: dge:Dgeo_2525 multi-sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; PAS fold-4; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; PAS; SPTR: Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: GAF domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004170750.1 InterPro IPR000223: IPR019759; KEGG: dra:DR_1321 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type YP_004170751.1 KEGG: dge:Dgeo_0939 hypothetical protein; SPTR: uncharacterized protein YP_004170752.1 KEGG: ddr:Deide_19965 hypothetical protein; SPTR: uncharacterized protein YP_004170753.1 KEGG: dge:Dgeo_1671 hypothetical protein; SPTR: HTH transcriptional regulator YP_004170754.1 COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR018320: IPR020046: IPR020047: IPR015361: IPR 001098: IPR002421: IPR008918; KEGG: dge:Dgeo_1666 DNA polymerase I; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; Taq polymerase, thermostable, exonuclease region; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; DNA-directed DNA polymerase, family A, palm domain; SPTR: DNA polymerase I; TIGRFAM: DNA polymerase 1; PFAM: Taq polymerase, exonuclease; 5'-3' exonuclease, C-terminal SAM fold; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase family A; TIGRFAM: DNA polymerase I YP_004170755.1 COGs: COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; HAMAP: Methionine sulphoxide reductase B; InterPro IPR002579; KEGG: dge:Dgeo_2072 methionine sulfoxide reductase B; PFAM: Methionine sulphoxide reductase B; PRIAM: Peptide-methionine (R)-S-oxide reductase; SPTR: Peptide methionine sulfoxide reductase msrB; TIGRFAM: Methionine sulphoxide reductase B; PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase YP_004170756.1 InterPro IPR011971: IPR019052; KEGG: tra:Trad_0797 protein of unknown function DUF2383; PFAM: Domain of unknown function DUF2383; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02284; PFAM: Domain of unknown function (DUF2383); TIGRFAM: conserved hypothetical protein YP_004170757.1 InterPro IPR003660; KEGG: dge:Dgeo_1467 sensor protein; PFAM: HAMP linker domain; SMART: HAMP linker domain; SPTR: sensor with HAMP domain; PFAM: HAMP domain YP_004170758.1 KEGG: dra:DR_1830 hypothetical protein; SPTR: uncharacterized protein YP_004170759.1 KEGG: dge:Dgeo_1465 hypothetical protein; SPTR: uncharacterized protein YP_004170760.1 KEGG: ddr:Deide_14700 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2847) YP_004170761.1 COGs: COG1092 SAM-dependent methyltransferase; KEGG: dge:Dgeo_1462 hypothetical protein; SPTR: SAM dependent methyltransferase; manually curated; PFAM: S-adenosylmethionine-dependent methyltransferase YP_004170762.1 KEGG: mtb:TBMG_00608 two component system sensor kinase; SPTR: Sensory box sensor histidine kianse/response regulator YP_004170763.1 COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155: IPR020616: IPR020617; KEGG: ddr:Deide_16670 acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase); PFAM: Thiolase, N-terminal; Thiolase, C-terminal; PRIAM: Acetyl-CoA C-acetyltransferase; SPTR: acetyl-CoA C-acetyltransferase (Acetoacetyl-CoA thiolase); TIGRFAM: Thiolase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases YP_004170764.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789: IPR000792; KEGG: rca:Rcas_1142 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004170765.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712: IPR003594; KEGG: cag:Cagg_2803 histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SPTR: histidine kinase; PFAM: histidine kinase YP_004170766.1 COGs: COG4270 membrane protein; KEGG: ddr:Deide_2p01200 hypothetical protein; SPTR: uncharacterized protein YP_004170767.1 COGs: COG0539 ribosomal protein S1; InterPro IPR003029: IPR022967; KEGG: dge:Dgeo_1577 30S ribosomal protein S1; PFAM: ribosomal protein S1, RNA-binding domain; SMART: RNA-binding domain, S1; SPTR: RNA binding S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1 YP_004170768.1 COGs: COG0492 Thioredoxin reductase; InterPro IPR005982: IPR013027; KEGG: dge:Dgeo_1576 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Thioredoxin-disulfide reductase; SPTR: Thioredoxin reductase; TIGRFAM: Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase YP_004170769.1 KEGG: dge:Dgeo_1575 metal dependent phosphohydrolase; SPTR: Metal dependent phosphohydrolase; PFAM: HD domain YP_004170770.1 COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR006439: IPR005834; KEGG: vex:VEA_000876 probable hydrolase; PFAM: haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_004170771.1 COGs: COG4294 UV damage repair endonuclease; InterPro IPR004601; KEGG: ddr:Deide_17800 UV damage endonuclease; PFAM: UV-endonuclease UvdE; SPTR: UV DNA damage endonuclease; TIGRFAM: UV-endonuclease UvdE; PFAM: UV-endonuclease UvdE; TIGRFAM: UV damage endonuclease UvdE YP_004170772.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: ddr:Deide_15950 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; PFAM: NUDIX domain YP_004170773.1 COGs: COG0216 Protein chain release factor A; HAMAP: Peptide chain release factor 1; InterPro IPR004373: IPR005139: IPR000352; KEGG: dge:Dgeo_0609 peptide chain release factor 1; PFAM: Peptide chain release factor class I/class II; Peptide chain release factor; SMART: Peptide chain release factor; SPTR: Peptide chain release factor 1; TIGRFAM: Peptide chain release factor 1; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1 YP_004170774.1 COGs: COG0460 homoserine dehydrogenase; InterPro IPR005106: IPR001342; KEGG: dge:Dgeo_0610 homoserine dehydrogenase; PFAM: homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; PRIAM: homoserine dehydrogenase; SPTR: homoserine dehydrogenase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase, NAD binding domain YP_004170775.1 COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: ddr:Deide_18250 octaprenyl-diphosphate synthase; PFAM: Polyprenyl synthetase; PRIAM: Trans-hexaprenyltranstransferase; SPTR: octaprenyl-diphosphate synthase; PFAM: Polyprenyl synthetase YP_004170776.1 COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR015803: IPR015273; KEGG: ddr:Deide_16410 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia; Cysteinyl-tRNA synthetase, class Ia, DALR; PRIAM: Cysteine--tRNA ligase; SMART: Cysteinyl-tRNA synthetase, class Ia, DALR; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase YP_004170777.1 KEGG: dge:Dgeo_1532 hypothetical protein; SPTR: uncharacterized protein YP_004170778.1 KEGG: dge:Dgeo_0547 von Willebrand factor, type A; SPTR: von Willebrand factor, type A; PFAM: von Willebrand factor type A domain YP_004170779.1 COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR003594: IPR013506: IPR006171: IPR002288: IPR 001241; KEGG: dge:Dgeo_0546 DNA topoisomerase (ATP-hydrolyzing); PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; SPTR: DNA topoisomerase (ATP-hydrolyzing); PFAM: Toprim domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit YP_004170780.1 InterPro IPR001296; KEGG: dra:DR_A0368 hypothetical protein; PFAM: Glycosyl transferase, group 1; SPTR: uncharacterized protein; PFAM: Glycosyl transferases group 1 YP_004170781.1 COGs: COG0562 UDP-galactopyranose mutase; InterPro IPR004379: IPR013027: IPR015899; KEGG: dge:Dgeo_2530 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase, C-terminal; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: UDP-galactopyranose mutase; SPTR: UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase YP_004170782.1 COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: dge:Dgeo_2008 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase and Glycosyl hydrolase family 1; PFAM: RmlD substrate binding domain; Glycosyl hydrolase family 1; TIGRFAM: dTDP-4-dehydrorhamnose reductase YP_004170783.1 COGs: COG0405 gamma-glutamyltransferase; InterPro IPR000101; KEGG: dge:Dgeo_1141 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; PRIAM: gamma-glutamyltransferase; SPTR: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase YP_004170784.1 KEGG: dra:DR_2476 hypothetical protein; SPTR: uncharacterized protein YP_004170785.1 COGs: COG4326 Sporulation control protein; InterPro IPR009776; KEGG: ddr:Deide_06640 sporulation-control protein; PFAM: Sporulation stage 0, protein M; SPTR: sporulation-control protein; PFAM: SpoOM protein YP_004170786.1 COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680; KEGG: dra:DR_0824 hydrolase, PFAM: Amidohydrolase 1; PRIAM: S-adenosylhomocysteine deaminase; SPTR: Uncharacterized protein DR_0824; PFAM: Amidohydrolase family YP_004170787.1 KEGG: dra:DR_0486 hypothetical protein; SPTR: uncharacterized protein YP_004170788.1 COGs: COG0141 histidinol dehydrogenase; HAMAP: histidinol dehydrogenase, prokaryotic-type; InterPro IPR012131; KEGG: dge:Dgeo_0584 histidinol dehydrogenase; PFAM: histidinol dehydrogenase, prokaryotic-type; PRIAM: histidinol dehydrogenase; SPTR: histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase, prokaryotic-type; PFAM: histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase YP_004170789.1 KEGG: dge:Dgeo_0585 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3108) YP_004170790.1 COGs: COG1015 Phosphopentomutase; InterPro IPR010045: IPR006124; KEGG: dra:DR_2135 phosphopentomutase; PFAM: Metalloenzyme; PRIAM: Phosphopentomutase; SPTR: Phosphopentomutase; TIGRFAM: Phosphopentomutase; PFAM: Metalloenzyme superfamily; TIGRFAM: phosphopentomutase YP_004170791.1 KEGG: sma:SAV_327 hypothetical protein; SPTR: uncharacterized protein; PFAM: Nucleoside 2-deoxyribosyltransferase YP_004170792.1 InterPro IPR006750; KEGG: cbt:CLH_3349 hypothetical protein; PFAM: Protein of unknown function DUF606; SPTR: membrane protein; PFAM: Protein of unknown function, DUF606 YP_004170793.1 COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: dge:Dgeo_0587 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type transport system, ATPase component; PFAM: ABC transporter YP_004170794.1 COGs: COG4372 Uncharacterized protein with the myosin-like domain; KEGG: dge:Dgeo_0588 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3084) YP_004170795.1 InterPro IPR001842: IPR001570; KEGG: ddr:Deide_18430 bacillolysin, precursor; PFAM: Peptidase M4, thermolysin C-terminal; Peptidase M36, fungalysin; SPTR: Predicted protein; PFAM: Fungalysin metallopeptidase (M36) YP_004170796.1 KEGG: dge:Dgeo_1193 AlgP-related protein; SPTR: uncharacterized protein YP_004170797.1 KEGG: uma:UM03709.1 hypothetical protein; SPTR: Paraquat-inducible protein A YP_004170798.1 COGs: COG1075 acetyltransferase and hydrolase with the alpha/beta hydrolase fold; KEGG: dra:DR_0334 lipase, PRIAM: Triacylglycerol lipase; SPTR: lipase YP_004170799.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR011340: IPR000192; KEGG: dra:DR_0151 NifS-related protein; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: NifS-related protein; TIGRFAM: Cysteine desulfurase-related; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase, VC1184 subfamily YP_004170800.1 COGs: COG1331 Highly conserved protein containing a thioredoxin domain; InterPro IPR004879; KEGG: dge:Dgeo_1263 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF255 YP_004170801.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: ddr:Deide_01740 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: peptidase S8 and S53, subtilisin, kexin, sedolisin; PFAM: Subtilase family YP_004170802.1 COGs: COG3188 P pilus assembly protein porin PapC; InterPro IPR000015; KEGG: mca:MCA0304 fimbrial biogenesis protein; PFAM: Fimbrial biogenesis outer membrane usher protein; SPTR: outer membrane usher transmembrane protein; PFAM: Fimbrial Usher protein YP_004170803.1 COGs: COG3121 P pilus assembly protein chaperone PapD; KEGG: mca:MCA0305 chaperone protein PmfD, SPTR: chaperone protein pmfD; PFAM: Gram-negative pili assembly chaperone, N-terminal domain YP_004170804.1 COGs: COG5430 Uncharacterized secreted protein; InterPro IPR007893; KEGG: gbe:GbCGDNIH1_1327 protein U precursor; PFAM: Spore coat protein U; SMART: Spore coat protein U; SPTR: Protein U; PFAM: Spore Coat Protein U domain YP_004170805.1 COGs: COG0265 trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254: IPR001478; KEGG: msv:Mesil_1607 peptidase S1 and S6 chymotrypsin/Hap; PFAM: Peptidase S1/S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF; SPTR: Peptidase S1 and S6 chymotrypsin/Hap; PFAM: trypsin YP_004170806.1 KEGG: mau:Micau_2484 ABC-2 type transporter; SPTR: AFGP polyprotein YP_004170807.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: dge:Dgeo_2215 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004170808.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660: IPR003661: IPR003594; KEGG: ddr:Deide_22150 histidine kinase, classic; membrane protein; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: histidine kinase, classic; membrane protein; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004170809.1 COGs: COG3981 acetyltransferase; InterPro IPR000182; KEGG: ddr:Deide_07221 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004170810.1 COGs: COG1032 Fe-S oxidoreductase; InterPro IPR007197: IPR006638; KEGG: ddr:Deide_13520 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily YP_004170811.1 InterPro IPR013216; KEGG: ddr:Deide_13530 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: uncharacterized protein; PFAM: Methyltransferase domain YP_004170812.1 KEGG: dra:DR_1464 hypothetical protein; SPTR: uncharacterized protein YP_004170813.1 COGs: COG0538 isocitrate dehydrogenase; InterPro IPR001804; KEGG: ddr:Deide_13580 isocitrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: isocitrate dehydrogenase (NADP(+)); SPTR: isocitrate dehydrogenase [NADP]; PFAM: isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, prokaryotic type YP_004170814.1 InterPro IPR000835; KEGG: dge:Dgeo_1148 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; PFAM: MarR family YP_004170815.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR004638: IPR011701; KEGG: dge:Dgeo_1147 EmrB/QacA family drug resistance transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Drug resistance transporter EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily YP_004170816.1 COGs: COG4714 Uncharacterized membrane-anchored protein; InterPro IPR018682; KEGG: xca:xccb100_0373 hypothetical protein; PFAM: Protein of unknown function DUF2167, membrane; SPTR: membrane protein; PFAM: Protein of unknown function (DUF2167) YP_004170817.1 COGs: COG4106 Trans-aconitate methyltransferase; InterPro IPR013216; KEGG: dra:DR_0504 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: uncharacterized protein; PFAM: Methyltransferase domain YP_004170818.1 KEGG: ddr:Deide_13340 hypothetical protein; SPTR: uncharacterized protein YP_004170819.1 COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; HAMAP: Dihydroxy-acid dehydratase; InterPro IPR004404: IPR000581; KEGG: sti:Sthe_1518 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; PRIAM: Dihydroxy-acid dehydratase; SPTR: Dihydroxy-acid dehydratase 1; TIGRFAM: Dihydroxy-acid dehydratase; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase YP_004170820.1 KEGG: tra:Trad_0187 hypothetical protein; SPTR: uncharacterized protein YP_004170821.1 KEGG: sml:Smlt4058 rod shape-determining protein MreC; SPTR: rod shape-determining protein YP_004170822.1 COGs: COG4551 protein tyrosine phosphatase; InterPro IPR017867; KEGG: rle:RL3007 hypothetical protein; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: uncharacterized protein; PFAM: Low molecular weight phosphotyrosine protein phosphatase YP_004170823.1 COGs: COG2329 Uncharacterized protein involved in biosynthesis of extracellular polysaccharides; InterPro IPR007138; KEGG: dra:DR_1636 hypothetical protein; PFAM: Antibiotic biosynthesis monooxygenase; SPTR: uncharacterized protein; PFAM: Antibiotic biosynthesis monooxygenase YP_004170824.1 COGs: COG0119 isopropylmalate/homocitrate/citramalate synthase; InterPro IPR005671: IPR000891: IPR013709; KEGG: dge:Dgeo_0599 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; PRIAM: 2-isopropylmalate synthase; SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; SPTR: 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase, bacterial type; PFAM: LeuA allosteric (dimerisation) domain; HMGL-like; TIGRFAM: 2-isopropylmalate synthase, bacterial type YP_004170825.1 KEGG: dra:DR_0726 hypothetical protein; SPTR: uncharacterized protein YP_004170826.1 COGs: COG0059 Ketol-acid reductoisomerase; HAMAP: Acetohydroxy acid isomeroreductase; InterPro IPR013023: IPR013116: IPR000506; KEGG: ddr:Deide_16830 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; PRIAM: Ketol-acid reductoisomerase; SPTR: Ketol-acid reductoisomerase; TIGRFAM: Acetohydroxy acid isomeroreductase; PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase YP_004170827.1 COGs: COG0440 Acetolactate synthase small (regulatory) subunit; InterPro IPR004789: IPR002912: IPR019455; KEGG: dge:Dgeo_0601 acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT; SPTR: Acetolactate synthase, small subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: Small subunit of acetolactate synthase; ACT domain; TIGRFAM: acetolactate synthase, small subunit YP_004170828.1 COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterPro IPR012846: IPR012001: IPR012000: IPR011766; KEGG: dge:Dgeo_0602 acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Acetolactate synthase; SPTR: Acetolactate synthase; TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type YP_004170829.1 COGs: COG0473 isocitrate/isopropylmalate dehydrogenase; HAMAP: isopropylmalate dehydrogenase; InterPro IPR004429: IPR001804; KEGG: dge:Dgeo_1033 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: 3-isopropylmalate dehydrogenase; TIGRFAM: isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase YP_004170830.1 COGs: COG0066 3-isopropylmalate dehydratase small subunit; HAMAP: 3-isopropylmalate dehydratase small subunit; InterPro IPR011827: IPR000573; KEGG: dge:Dgeo_1032 3-isopropylmalate dehydratase small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; PRIAM: (R)-2-methylmalate dehydratase; SPTR: 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit, subgroup; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit YP_004170831.1 COGs: COG1280 threonine efflux protein; InterPro IPR001123; KEGG: cro:ROD_39311 threonine efflux protein; PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: Threonine efflux protein; PFAM: LysE type translocator; TIGRFAM: The Resistance to homoserine/Threonine (RhtB) Family protein YP_004170832.1 COGs: COG0065 3-isopropylmalate dehydratase large subunit; HAMAP: homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic; InterPro IPR011826: IPR006251: IPR001030; KEGG: dge:Dgeo_1030 3-isopropylmalate dehydratase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; SPTR: 3-isopropylmalate dehydratase large subunit 1; TIGRFAM: homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup; homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic; PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit; homoaconitate hydratase YP_004170833.1 COGs: COG1164 Oligoendopeptidase F; InterPro IPR011977: IPR001567; KEGG: ddr:Deide_13010 oligoendopeptidase F; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; SPTR: oligoendopeptidase F; TIGRFAM: Peptidase M3B, oligoendopeptidase-related clade 3; PFAM: Oligopeptidase F; Peptidase family M3; TIGRFAM: oligoendopeptidase, pepF/M3 family YP_004170834.1 COGs: COG4956 Integral membrane protein (PIN domain superfamily); InterPro IPR002716: IPR006596; KEGG: dge:Dgeo_0998 PilT protein-like protein; PFAM: PilT protein, N-terminal; SMART: Nucleotide binding protein, PINc; SPTR: Membrane associated PIN-like nuclease; PFAM: PIN domain YP_004170835.1 COGs: COG1066 ATP-dependent serine protease; InterPro IPR004504: IPR003593; KEGG: dge:Dgeo_1212 DNA repair protein RadA; SMART: ATPase, AAA+ type, core; SPTR: DNA repair protein radA; TIGRFAM: DNA repair protein RadA; PFAM: KaiC; TIGRFAM: DNA repair protein RadA YP_004170836.1 COGs: COG3860 conserved hypothetical protein; InterPro IPR018656; KEGG: dra:DR_1104 hypothetical protein; PFAM: Protein of unknown function DUF2087; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2087) YP_004170837.1 COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR004176: IPR003959: IPR013093: IPR003593; KEGG: dge:Dgeo_1215 ATPase AAA-2; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: ATPase AAA-2; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA) YP_004170838.1 KEGG: ddr:Deide_12790 hypothetical protein; SPTR: uncharacterized protein YP_004170839.1 InterPro IPR000086; KEGG: ddr:Deide_08730 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: MutT/nudix family protein; PFAM: NUDIX domain YP_004170840.1 COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR011551: IPR004518; KEGG: ddr:Deide_08740 nucleoside triphosphate pyrophosphohydrolase; PFAM: NTP pyrophosphohydrolase MazG, catalytic core; SPTR: MazG protein; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein YP_004170841.1 KEGG: dge:Dgeo_0817 hypothetical protein; SPTR: uncharacterized protein YP_004170842.1 COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198: IPR020842; KEGG: dge:Dgeo_0818 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-ACP reductase; SMART: Polyketide synthase/Fatty acid synthase, KR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004170843.1 COGs: COG5403 conserved hypothetical protein; KEGG: dge:Dgeo_1658 hypothetical protein; SPTR: uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF937) YP_004170844.1 KEGG: syp:SYNPCC7002_A2526 hypothetical protein YP_004170845.1 COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterProIPR004811: IPR006674: IPR007685: IPR004095: IPR 002912: IPR003607; KEGG: dge:Dgeo_1308 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD subdomain; TGS; Amino acid-binding ACT; PRIAM: GTP diphosphokinase; SMART: RelA/SpoT; Metal-dependent phosphohydrolase, HD domain; SPTR: (P)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT protein; PFAM: HD domain; ACT domain; Region found in RelA / SpoT proteins; TGS domain; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family YP_004170846.1 COGs: COG2317 Zn-dependent carboxypeptidase; InterPro IPR001333; KEGG: dra:DR_2423 carboxypeptidase; PFAM: Peptidase M32, carboxypeptidase Taq metallopeptidase; PRIAM: Carboxypeptidase Taq; SPTR: Carboxypeptidase; PFAM: Carboxypeptidase Taq (M32) metallopeptidase YP_004170847.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR006311: IPR001279; KEGG: mrb:Mrub_2983 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily YP_004170848.1 COGs: COG0103 ribosomal protein S9; InterPro IPR000754; KEGG: dge:Dgeo_1735 30S ribosomal protein S9; PFAM: ribosomal protein S9; SPTR: 30S ribosomal protein S9; PFAM: ribosomal protein S9/S16 YP_004170849.1 COGs: COG0102 ribosomal protein L13; InterPro IPR005823: IPR005822; KEGG: dge:Dgeo_1734 50S ribosomal protein L13; PFAM: ribosomal protein L13; SPTR: 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial-type; PFAM: ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type YP_004170850.1 COGs: COG0757 3-dehydroquinate dehydratase II; HAMAP: Dehydroquinase, class II; InterPro IPR001874; KEGG: dge:Dgeo_1733 3-dehydroquinate dehydratase; PFAM: Dehydroquinase, class II; PRIAM: 3-dehydroquinate dehydratase; SPTR: 3-dehydroquinate dehydratase; TIGRFAM: Dehydroquinase, class II; PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II YP_004170851.1 COGs: COG0337 3-dehydroquinate synthetase; HAMAP: 3-dehydroquinate synthase AroB, subgroup; InterPro IPR016037: IPR002658; KEGG: dge:Dgeo_1732 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase YP_004170852.1 COGs: COG0703 shikimate kinase; HAMAP: shikimate kinase; InterPro IPR000623; KEGG: dra:DR_0776 shikimate kinase; PFAM: shikimate kinase; PRIAM: shikimate kinase; SPTR: shikimate kinase; PFAM: shikimate kinase YP_004170853.1 COGs: COG0082 Chorismate synthase; InterPro IPR000453; KEGG: dge:Dgeo_1730 chorismate synthase; PFAM: Chorismate synthase; PRIAM: Chorismate synthase; SPTR: Chorismate synthase; TIGRFAM: Chorismate synthase; PFAM: Chorismate synthase; TIGRFAM: chorismate synthase YP_004170854.1 COGs: COG1450 Type II secretory pathway component PulD; InterPro IPR005644: IPR004846; KEGG: dge:Dgeo_1729 type II and III secretion system protein; PFAM: Type II/III secretion system; NolW-like; SPTR: Type IV pilus assembly protein PilQ; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein YP_004170855.1 KEGG: ddr:Deide_17630 hypothetical protein; SPTR: uncharacterized protein YP_004170856.1 InterPro IPR019677; KEGG: ddr:Deide_17620 type IV pilus assembly protein PilO precursor; PFAM: General secretion pathway protein M; SPTR: Type IV pilus assembly protein PilO; PFAM: Pilus assembly protein, PilO YP_004170857.1 InterPro IPR007813; KEGG: ddr:Deide_17610 type IV pilus assembly protein PilN; PFAM: Fimbrial assembly; SPTR: Type IV pilus assembly protein PilN YP_004170858.1 COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883: IPR003494; KEGG: ddr:Deide_17600 type IV pilus assembly protein PilM; PFAM: Cell division protein FtsA domain; SPTR: Type IV pilus assembly protein PilM; TIGRFAM: Type IV pilus assembly protein PilM; PFAM: Competence protein A; Cell division protein FtsA; TIGRFAM: cell division protein FtsA; type IV pilus assembly protein PilM YP_004170859.1 COGs: COG0473 isocitrate/isopropylmalate dehydrogenase; InterPro IPR001804; KEGG: dge:Dgeo_1458 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isopropylmalate/isohomocitrate dehydrogenases YP_004170860.1 COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: dge:Dgeo_1457 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase YP_004170861.1 COGs: COG4121 conserved hypothetical protein; InterPro IPR008471; KEGG: dge:Dgeo_1456 hypothetical protein; PFAM: Domain of unknown function DUF752; SPTR: Predicted SAM dependent methyltransferase DUF752; PFAM: Protein of unknown function (DUF752) YP_004170862.1 COGs: COG0688 Phosphatidylserine decarboxylase; KEGG: mta:Moth_0455 phosphatidylserine decarboxylase-related; SPTR: Phosphatidylserine decarboxylase-related; PFAM: Phosphatidylserine decarboxylase YP_004170863.1 COGs: COG0400 esterase; InterPro IPR003140; KEGG: dge:Dgeo_0941 phospholipase/carboxylesterase; PFAM: Phospholipase/carboxylesterase; SPTR: Lactoylglutathione lyase and esterase family domains; PFAM: Phospholipase/Carboxylesterase YP_004170864.1 InterPro IPR004360; KEGG: dge:Dgeo_0941 phospholipase/carboxylesterase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Lactoylglutathione lyase and esterase family domains; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_004170865.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR000160: IPR001633; KEGG: ddr:Deide_18060 diguanylate cyclase/phosphodiesterase; membrane protein; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SPTR: diguanylate cyclase/phosphodiesterase; membrane protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004170866.1 COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: dge:Dgeo_0942 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; PFAM: MarR family YP_004170867.1 COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR002142; KEGG: dge:Dgeo_0654 peptidase S49; PFAM: Peptidase S49; SPTR: Peptidase S49; PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 67K type YP_004170868.1 COGs: COG2346 Truncated hemoglobins; InterPro IPR001486; KEGG: dge:Dgeo_0655 globin; PFAM: Globin, truncated bacterial-like; SPTR: Globin; PFAM: Bacterial-like globin YP_004170869.1 InterPro IPR003088; KEGG: ddr:Deide_12980 cytochrome c precursor; PFAM: Cytochrome c, class I; SPTR: Cytochrome c; PFAM: Cytochrome c YP_004170870.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: ddr:Deide_12970 iron siderophore/cobalamin (vitamine B12) ABC transporter, periplasmic component; PFAM: Periplasmic binding protein; SPTR: iron siderophore/cobalamin (Vitamine B12) ABC transporter, periplasmic component; PFAM: Periplasmic binding protein YP_004170871.1 COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: dra:DR_0875 zinc metalloprotease, PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; SPTR: Zinc metalloprotease, ; PFAM: Peptidase family M1 YP_004170872.1 InterPro IPR001647; KEGG: dge:Dgeo_0658 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family YP_004170873.1 COGs: COG0760 Parvulin-like peptidyl-prolyl isomerase; InterPro IPR000297; KEGG: dra:DR_1063 peptidyl-prolyl cis-trans isomerase C; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR: Peptidyl-prolyl cis-trans isomerase C; PFAM: PPIC-type PPIASE domain YP_004170874.1 COGs: COG2348 Uncharacterized protein involved in methicillin resistance; InterPro IPR003447; KEGG: dra:DR_1062 FemA-related protein; PFAM: Methicillin resistance protein; SPTR: FemA-related protein; PFAM: FemAB family YP_004170875.1 KEGG: dge:Dgeo_1192 hypothetical protein; SPTR: hydroxymethylbutenyl pyrophosphate reductase lytB related protein YP_004170876.1 COGs: COG1878 metal-dependent hydrolase; InterPro IPR007325; KEGG: dge:Dgeo_1533 cyclase; PFAM: cyclase; PRIAM: Arylformamidase; SPTR: Kynurenine formamidase; PFAM: cyclase; TIGRFAM: arylformamidase YP_004170877.1 COGs: COG3844 Kynureninase; InterPro IPR010111: IPR000192; KEGG: dge:Dgeo_1534 kynureninase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Kynureninase; SPTR: Kynureninase; TIGRFAM: Kynureninase; PFAM: Aminotransferase class-V; TIGRFAM: kynureninase YP_004170878.1 COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: ddr:Deide_15530 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family YP_004170879.1 COGs: COG4828 membrane protein; InterPro IPR012427; KEGG: dge:Dgeo_1200 hypothetical protein; PFAM: Protein of unknown function DUF1622; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1622) YP_004170880.1 InterPro IPR003423; KEGG: dge:Dgeo_2119 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein YP_004170881.1 InterPro IPR003423; KEGG: dge:Dgeo_2118 hypothetical protein; PFAM: Outer membrane efflux protein; SPTR: uncharacterized protein; PFAM: Outer membrane efflux protein YP_004170882.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: dge:Dgeo_2117 secretion protein HlyD; PFAM: Secretion protein HlyD; SPTR: Secretion protein HlyD; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004170883.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dge:Dgeo_2116 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family YP_004170884.1 InterPro IPR001647; KEGG: dge:Dgeo_2120 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family YP_004170885.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: ddr:Deide_07490 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; PFAM: NUDIX domain YP_004170886.1 COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR004527: IPR020058; KEGG: ddr:Deide_15640 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; PRIAM: Glutamate--tRNA ligase; SPTR: Glutamate--tRNA ligase (Glutamyl-tRNA synthetase) (Glutamic acid translase); TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family YP_004170887.1 COGs: COG3187 Heat shock protein; InterPro IPR005184; KEGG: dra:DR_1940 hypothetical protein; PFAM: Domain of unknown function DUF306, Meta/HslJ; SPTR: uncharacterized protein; PFAM: META domain YP_004170888.1 COGs: COG0552 Signal recognition particle GTPase; InterPro IPR004390: IPR013822: IPR000897: IPR003593; KEGG: ddr:Deide_13740 cell division protein FtsY, signal recognition particle-docking protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; SMART: Signal recognition particle, SRP54 subunit, GTPase; ATPase, AAA+ type, core; Signal recognition particle, SRP54 subunit, helical bundle; SPTR: Cell division protein ftsY, Signal recognition particle-docking protein FtsY; TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY YP_004170889.1 KEGG: dge:Dgeo_0487 hypothetical protein; SPTR: uncharacterized protein YP_004170890.1 COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR006402: IPR006439: IPR005834; KEGG: ddr:Deide_1p01460 phosphatase; PFAM: haloacid dehalogenase-like hydrolase; SPTR: phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_004170891.1 COGs: COG1760 L-serine deaminase; InterPro IPR004642: IPR005130; KEGG: dge:Dgeo_1331 L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: Serine dehydratase-like, alpha subunit; PRIAM: L-serine ammonia-lyase; SPTR: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; TIGRFAM: Serine dehydratase, alpha subunit; PFAM: Serine dehydratase alpha chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit YP_004170892.1 COGs: COG1760 L-serine deaminase; InterPro IPR004643: IPR005131; KEGG: dge:Dgeo_1332 L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: Serine dehydratase beta chain; PRIAM: L-serine ammonia-lyase; SPTR: L-serine dehydratase, iron-sulfur-dependent, beta subunit; TIGRFAM: Iron-sulphur-dependent L-serine dehydratase beta subunit; PFAM: Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit YP_004170893.1 COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR010108: IPR008671; KEGG: dge:Dgeo_0857 lycopene cyclase, beta and epsilon; PFAM: Lycopene cyclase-type, FAD-binding; PRIAM: Capsanthin/capsorubin synthase; SPTR: Lycopene cyclase, beta and epsilon; TIGRFAM: Lycopene cyclase, beta/epsilon; PFAM: Lycopene cyclase; TIGRFAM: lycopene cyclase YP_004170894.1 COGs: COG0657 Esterase/lipase; InterPro IPR013094; KEGG: dge:Dgeo_0856 alpha/beta hydrolase fold-3; SPTR: Alpha/betasuperfamily hydrolase; PFAM: alpha/beta hydrolase fold YP_004170895.1 KEGG: scl:sce3534 hypothetical protein; SPTR: uncharacterized protein YP_004170896.1 InterPro IPR018392: IPR002482; KEGG: dge:Dgeo_1694 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidoglycan-binding LysM domain-containing protein; PFAM: Predicted periplasmic protein (DUF2233); LysM domain YP_004170897.1 KEGG: hvo:HVO_2586 hypothetical protein; SPTR: uncharacterized protein YP_004170898.1 KEGG: dge:Dgeo_1437 hypothetical protein; SPTR: uncharacterized protein YP_004170899.1 COGs: COG0433 ATPase; KEGG: dge:Dgeo_1417 hypothetical protein; SPTR: HerA-like helicase/ATPase YP_004170900.1 COGs: COG2380 conserved hypothetical protein; InterPro IPR018977; KEGG: dra:DR_0836 hypothetical protein; PFAM: NurA domain; SPTR: uncharacterized protein YP_004170901.1 KEGG: dge:Dgeo_2068 hypothetical protein; SPTR: uncharacterized protein YP_004170903.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789: IPR000792; KEGG: dra:DR_B0081 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR: DNA-binding response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004170904.1 COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR003661: IPR003594; KEGG: msv:Mesil_3487 hypothetical protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: uncharacterized protein; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004170905.1 COGs: COG2060 K+-transporting ATPase A chain; InterPro IPR004623; KEGG: msv:Mesil_3490 hypothetical protein; PFAM: ATPase, K+ transporting, A subunit; PRIAM: Potassium-transporting ATPase; SPTR: Potassium-transporting ATPase A chain; TIGRFAM: ATPase, K+ transporting, A subunit; PFAM: Potassium-transporting ATPase A subunit; TIGRFAM: K+-transporting ATPase, KdpA YP_004170906.1 COGs: COG2216 High-affinity K+ transport system ATPase chain B; HAMAP: Potassium-transporting ATPase, B chain; InterPro IPR006391: IPR001757: IPR008250: IPR005834; KEGG: dra:DR_B0083 potassium-transporting ATPase subunit B; PFAM: ATPase, P-type, ATPase-associated domain; haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Potassium-transporting ATPase B chain; TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: K+-transporting ATPase, B subunit; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_004170907.1 COGs: COG2156 K+-transporting ATPase c chain; HAMAP: Potassium transporting ATPase, C subunit; InterPro IPR003820; KEGG: msv:Mesil_3493 hypothetical protein; PFAM: Potassium transporting ATPase, C subunit; PRIAM: Potassium-transporting ATPase; SPTR: Potassium-transporting ATPase C chain; TIGRFAM: Potassium transporting ATPase, C subunit; PFAM: K+-transporting ATPase, c chain; TIGRFAM: K+-transporting ATPase, C subunit YP_004170908.1 KEGG: dra:DR_1242 hypothetical protein; SPTR: uncharacterized protein YP_004170909.1 InterPro IPR000073; KEGG: pfl:PFL_4349 alpha/beta fold family hydrolase; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold YP_004170910.1 COGs: COG0640 transcriptional regulator protein; InterPro IPR001845; KEGG: dge:Dgeo_1314 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family YP_004170911.1 InterPro IPR012867; KEGG: ttr:Tter_2854 protein of unknown function DUF1648; PFAM: Protein of unknown function DUF1648; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1648) YP_004170912.1 COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR003852: IPR006016; KEGG: dge:Dgeo_2852 osmosensitive K+ channel His kinase sensor; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; UspA; SPTR: Potassium-transporting ATPase, D subunit; PFAM: Osmosensitive K+ channel His kinase sensor domain; Universal stress protein family YP_004170913.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: nhl:Nhal_0691 cysteine desulfurase, SufS subfamily; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Selenocysteine lyase; SPTR: Cysteine desulfurase; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily YP_004170914.1 COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR000172: IPR007867; KEGG: dra:DR_0965 GMC oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; PRIAM: Choline dehydrogenase; SPTR: GMC oxidoreductase; PFAM: GMC oxidoreductase YP_004170915.1 KEGG: ddr:Deide_17261 hypothetical protein; SPTR: uncharacterized protein YP_004170916.1 COGs: COG5637 integral membrane protein; InterPro IPR005031; KEGG: ddr:Deide_17270 cyclase/dehydrase; PFAM: Streptomyces cyclase/dehydrase; SPTR: cyclase/dehydrase; PFAM: Polyketide cyclase / dehydrase and lipid transport YP_004170917.1 COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154: IPR013149; KEGG: ddr:Deide_17280 S-(hydroxymethyl)glutathione dehydrogenase (class III alcohol dehydrogenase); PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; PRIAM: S-(hydroxymethyl)glutathione dehydrogenase; SPTR: S-(hydroxymethyl)glutathione dehydrogenase (Class III alcohol dehydrogenase); PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_004170918.1 COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; InterPro IPR006345: IPR003593; KEGG: dge:Dgeo_0826 helicase RecD/TraA; SMART: ATPase, AAA+ type, core; SPTR: Helicase RecD/TraA; TIGRFAM: DNA helicase, RecD/TraA type; TIGRFAM: helicase, , RecD/TraA family YP_004170919.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843: IPR001761; KEGG: dge:Dgeo_0752 LacI family transcription regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family YP_004170920.1 InterPro IPR011717; KEGG: dra:DR_0724 hypothetical protein; SPTR: uncharacterized protein YP_004170921.1 KEGG: svo:SVI_2561 hypothetical protein; SPTR: Fibronectin type III domain protein YP_004170922.1 COGs: COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; InterPro IPR002035; KEGG: ava:Ava_0254 von Willebrand factor, type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: von Willebrand factor, type A; PFAM: von Willebrand factor type A domain YP_004170923.1 KEGG: npu:Npun_R3695 hypothetical protein; SPTR: uncharacterized protein YP_004170924.1 KEGG: npu:Npun_R3696 hypothetical protein; SPTR: uncharacterized protein YP_004170925.1 COGs: COG0420 DNA repair exonuclease; InterPro IPR004593: IPR004843; KEGG: dge:Dgeo_0824 nuclease SbcCD, D subunit; PFAM: Metallo-dependent phosphatase; SPTR: Nuclease SbcCD, D subunit; TIGRFAM: Exonuclease SbcD; PFAM: Calcineurin-like phosphoesterase; Type 5 capsule protein repressor C terminal; TIGRFAM: exonuclease SbcD YP_004170926.1 COGs: COG0419 ATPase involved in DNA repair; InterPro IPR003395; KEGG: dge:Dgeo_0823 SMC protein-like protein; PFAM: RecF/RecN/SMC; SPTR: SbcC, ATPase involved in DNA repair; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: exonuclease SbcC YP_004170927.1 KEGG: dge:Dgeo_1530 hypothetical protein; SPTR: uncharacterized protein YP_004170928.1 COGs: COG1520 FOG: WD40-like repeat; InterPro IPR002372: IPR018391; KEGG: ddr:Deide_06190 hypothetical protein; PFAM: Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: uncharacterized protein; PFAM: PQQ enzyme repeat YP_004170929.1 COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827: IPR000184; KEGG: dge:Dgeo_1425 surface antigen (D15); PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Surface antigen (D15); PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein YP_004170930.1 COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR011078: IPR001608; KEGG: ddr:Deide_08190 hypothetical protein; PFAM: Alanine racemase, N-terminal; SPTR: uncharacterized protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family YP_004170931.1 InterPro IPR019933: IPR007793; KEGG: ddr:Deide_08180 minicell-associated protein DivIVA; PFAM: DivIVA; SPTR: minicell-associated protein DivIVA; TIGRFAM: DivIVA domain; PFAM: DivIVA protein; TIGRFAM: DivIVA domain YP_004170932.1 KEGG: nml:Namu_3904 hypothetical protein; SPTR: uncharacterized protein YP_004170933.1 COGs: COG1476 transcriptional regulator protein; InterPro IPR001387; KEGG: pfl:PFL_4031 DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: DNA-binding protein; PFAM: Helix-turn-helix YP_004170934.1 COGs: COG4555 ABC-type Na+ transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: dge:Dgeo_1675 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type Na+ transport system, ATPase component; PFAM: ABC transporter YP_004170935.1 COGs: COG1668 ABC-type Na+ efflux pump permease component; InterPro IPR013525; KEGG: dge:Dgeo_1676 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-type Na+ efflux pump, permease component; PFAM: ABC-2 type transporter YP_004170936.1 KEGG: rno:140595 G protein-coupled receptor 83; SPTR: Two-component sensor histidine kinase YP_004170937.1 KEGG: mlo:mlr6568 hypothetical protein; SPTR: Mlr6568 protein YP_004170938.1 KEGG: mab:MAB_p15c TraA/ATP-dependent exoDNAse/relaxase; SPTR: uncharacterized protein YP_004170939.1 COGs: COG0164 ribonuclease HII; InterPro IPR001352; KEGG: dge:Dgeo_1623 ribonuclease HII; PFAM: ribonuclease HII/HIII; PRIAM: ribonuclease H; SPTR: ribonuclease; PFAM: ribonuclease HII YP_004170940.1 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638: IPR001320; KEGG: ddr:Deide_2p01060 amino acid ABC transporter, periplasmic component; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor; SPTR: amino acid ABC transporter, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_004170941.1 InterPro IPR000866; KEGG: tin:Tint_0600 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; SPTR: Thioredoxin; PFAM: Redoxin YP_004170942.1 COGs: COG1785 Alkaline phosphatase; InterPro IPR001952; KEGG: dge:Dgeo_3000 alkaline phosphatase; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; SPTR: Alkaline phosphatase; PFAM: Alkaline phosphatase YP_004170943.1 KEGG: msv:Mesil_3305 hypothetical protein; SPTR: uncharacterized protein YP_004170944.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: msv:Mesil_3304 translation initiation factor IF-2; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Translation initiation factor IF-2; PFAM: ABC transporter YP_004170945.1 InterPro IPR003838; KEGG: dra:DR_B0050 hypothetical protein; PFAM: Domain of unknown function DUF214, ABC transporter permease; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004170946.1 COGs: COG2364 membrane protein; InterPro IPR003740; KEGG: dra:DR_1875 hypothetical protein; PFAM: Protein of unknown function DUF161; SPTR: uncharacterized protein; PFAM: Uncharacterized BCR, YitT family COG1284 YP_004170947.1 COGs: COG2346 Truncated hemoglobins; InterPro IPR001486; KEGG: dge:Dgeo_1573 globin; PFAM: Globin, truncated bacterial-like; SPTR: Globin; PFAM: Bacterial-like globin YP_004170948.1 KEGG: dge:Dgeo_2132 hypothetical protein; SPTR: uncharacterized protein YP_004170949.1 KEGG: dge:Dgeo_1571 hypothetical protein; SPTR: RNA ligase of LigT family YP_004170950.1 COGs: COG2345 transcriptional regulator protein; InterPro IPR013196; KEGG: dge:Dgeo_1570 transcriptional regulator; SPTR: transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family YP_004170951.1 COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR002744: IPR019591; KEGG: dra:DR_0998 mrp protein; PFAM: ATPase-like, ParA/MinD; Domain of unknown function DUF59; SPTR: Protein mrp homolog; PFAM: ParA/MinD ATPase like; Domain of unknown function DUF59; Anion-transporting ATPase YP_004170952.1 KEGG: ddr:Deide_05590 hypothetical protein; SPTR: uncharacterized protein YP_004170953.1 COGs: COG0519 GMP synthase PP-ATPase domain/subunit; HAMAP: GMP synthase; InterProIPR022955: IPR004739: IPR001674: IPR000991: IPR 011063; KEGG: dge:Dgeo_0598 GMP synthase; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; tRNA(Ile)-lysidine/2-thiocytidine synthase; PRIAM: GMP synthase (glutamine-hydrolyzing); SPTR: GMP synthase [glutamine-hydrolyzing]; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit YP_004170954.1 COGs: COG1544 ribosome-associated protein Y (PSrp-1); InterPro IPR003489; KEGG: dge:Dgeo_1384 sigma 54 modulation protein/ribosomal protein S30EA; PFAM: ribosomal protein S30Ae/sigma 54 modulation protein; SPTR: Sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein YP_004170955.1 COGs: COG0196 FAD synthase; InterPro IPR002606: IPR015864: IPR015865; KEGG: dge:Dgeo_1809 riboflavin biosynthesis protein RibF; PFAM: riboflavin kinase; FAD synthetase; PRIAM: FAD synthetase., riboflavin kinase; SMART: riboflavin kinase; SPTR: riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin kinase/FAD synthetase; PFAM: riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase YP_004170956.1 InterPro IPR000086; KEGG: dge:Dgeo_1808 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; PFAM: NUDIX domain YP_004170957.1 KEGG: scl:sce7895 secreted protein; SPTR: secreted protein YP_004170958.1 COGs: COG0206 Cell division GTPase; InterPro IPR000158: IPR003008: IPR018316; KEGG: ddr:Deide_14590 cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; SMART: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Cell division protein ftsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ YP_004170959.1 COGs: COG0849 Actin-like ATPase involved in cell division; InterPro IPR020823: IPR003494; KEGG: dge:Dgeo_1634 cell division protein FtsA; PFAM: Cell division protein FtsA domain; SMART: Cell division protein FtsA domain; SPTR: Cell division protein FtsA; TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA YP_004170960.1 COGs: COG1589 Cell division septal protein; InterPro IPR013685; KEGG: dge:Dgeo_1633 cell division protein FtsQ; PFAM: Polypeptide-transport-associated, FtsQ-type; SPTR: Cell division protein FtsQ; PFAM: POTRA domain, FtsQ-type YP_004170961.1 COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; InterPro IPR003170: IPR006094: IPR011601; KEGG: ddr:Deide_14570 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; SPTR: UDP-N-acetylmuramate dehydrogenase (UDP-N-acetylenolpyruvoylglucosamine reductase); TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase YP_004170962.1 COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; InterPro IPR005758: IPR000713: IPR013221: IPR004101; KEGG: dge:Dgeo_1631 UDP-N-acetylmuramate--alanine ligase; PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal; PRIAM: UDP-N-acetylmuramate--L-alanine ligase; SPTR: UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase YP_004170963.1 COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; HAMAP: N-acetylglucosaminyltransferase, MurG; InterPro IPR006009: IPR004276: IPR007235; KEGG: dge:Dgeo_1630 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28; PRIAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; SPTR:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: N-acetylglucosaminyltransferase, MurG; PFAM: Glycosyltransferase family 28 N-terminal domain; Glycosyltransferase family 28 C-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase YP_004170964.1 COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: dge:Dgeo_0486 cell cycle protein; PFAM: Cell cycle protein; SPTR: Cell cycle protein; PFAM: Cell cycle protein YP_004170965.1 COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR005762: IPR013221: IPR004101; KEGG: ddr:Deide_05510 UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal; PRIAM: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; SPTR: UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; PFAM: Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_004170966.1 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; InterPro IPR003524: IPR018480: IPR000715; KEGG: dge:Dgeo_1461 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR:Phospho-N-acetylmuramoyl-pentapeptide-transfer ase; PFAM: Glycosyl transferase family 4; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase YP_004170967.1 KEGG: dge:Dgeo_1724 hypothetical protein; SPTR: uncharacterized protein YP_004170968.1 COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR005863: IPR000713: IPR013221: IPR004101; KEGG: dge:Dgeo_1723 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- -D-alanyl- D-alanyl ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a lanineligase; SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase; TIGRFAM: UDP-MurNAc-pentapeptide synthetase; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YP_004170969.1 InterPro IPR000073; KEGG: sro:Sros_9213 alpha/beta family hydrolase; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta family hydrolase YP_004170970.1 InterPro IPR008858; KEGG: dra:DR_1262 ribonucleoprotein Ro/SS-A-related protein; PFAM: TROVE; SPTR: 60 kDa SS-A/Ro ribonucleoprotein homolog; PFAM: TROVE domain YP_004170971.1 COGs: COG1461 kinase related to dihydroxyacetone kinase; InterPro IPR019986: IPR004007; KEGG: ddr:Deide_17580 Dak phosphatase; PFAM: Dak phosphatase; SPTR: Dak phosphatase; TIGRFAM: DAK2 domain-containing protein YloV; PFAM: DAK2 domain; TIGRFAM: DAK2 domain fusion protein YloV YP_004170972.1 COGs: COG1302 conserved hypothetical protein; InterPro IPR005531; KEGG: dge:Dgeo_1721 hypothetical protein; PFAM: Alkaline shock protein Asp23; SPTR: Alkaline shock-like protein DUF322; PFAM: Protein of unknown function (DUF322) YP_004170973.1 KEGG: dra:DR_1048 hypothetical protein; SPTR: uncharacterized protein YP_004170974.1 InterPro IPR005067; KEGG: dge:Dgeo_0121 fatty acid desaturase, type 2; PFAM: Fatty acid desaturase, type 2; SPTR: Fatty acid desaturase, type 2; PFAM: Fatty acid desaturase YP_004170975.1 KEGG: vpr:Vpar_1738 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2262) YP_004170976.1 COGs: COG1316 Transcriptional regulator; InterPro IPR004474; KEGG: bmq:BMQ_1140 membrane-bound protein, transcription regulator LytR; PFAM: Cell envelope-related transcriptional attenuator; SPTR: Membrane-bound protein lytR; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain YP_004170977.1 COGs: COG1193 Mismatch repair ATPase (MutS family); HAMAP: DNA mismatch repair protein MutS, type 2; InterPro IPR005747: IPR000432: IPR002625: IPR007696; KEGG: dge:Dgeo_0899 MutS2 family protein; PFAM: Smr protein/MutS2 C-terminal; DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; Smr protein/MutS2 C-terminal; SPTR: MutS2 protein; TIGRFAM: DNA mismatch repair protein MutS, type 2; PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein YP_004170978.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR000160: IPR001633; KEGG: azo:azo1278 EAL/GGDEF/PAS/PAC-domain-containing signalling protein; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SPTR: EAL/GGDEF/PAS/PAC-domain containing signalling protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004170979.1 KEGG: ddr:Deide_05001 conserved hypothetical protein, precursor; SPTR: uncharacterized protein YP_004170980.1 KEGG: cqu:CpipJ_CPIJ001195 glyoxylate reductase/hydroxypyruvate reductase; SPTR: Glyoxylate reductase/hydroxypyruvate reductase YP_004170981.1 COGs: COG0820 Fe-S-cluster redox enzyme; HAMAP: ribosomal RNA large subunit methyltransferase RlmN; InterPro IPR004383: IPR007197; KEGG: dge:Dgeo_0633 ribosomal RNA large subunit methyltransferase N; PFAM: Radical SAM; SPTR: ribosomal RNA large subunit methyltransferase N; TIGRFAM: ribosomal RNA large subunit methyltransferase RlmN; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM enzyme, Cfr family YP_004170982.1 InterPro IPR013105: IPR001440: IPR019734; KEGG: dge:Dgeo_0632 tetratricopeptide TPR_2; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SPTR: Tetratricopeptide TPR_2; PFAM: Tetratricopeptide repeat YP_004170983.1 InterPro IPR007730; KEGG: dge:Dgeo_0631 sporulation related; PFAM: Sporulation-related domain; SPTR: Spor domain protein; PFAM: Sporulation related domain YP_004170984.1 COGs: COG2344 AT-rich DNA-binding protein; HAMAP: Transcriptional repressor, redox-sensing, Rex; InterPro IPR022876: IPR009718: IPR003781; KEGG: dge:Dgeo_0630 redox-sensing transcriptional repressor REX; PFAM: CoA-binding; Rex DNA-binding, C-terminal; SMART: CoA-binding; SPTR: Redox-sensing transcriptional repressor rex; PFAM: CoA binding domain; DNA-binding protein N-terminus YP_004170985.1 KEGG: dge:Dgeo_0629 hypothetical protein; SPTR: uncharacterized protein YP_004170986.1 InterPro IPR000601; KEGG: ddr:Deide_14031 hypothetical protein; PFAM: PKD domain; SPTR: uncharacterized protein YP_004170987.1 COGs: COG3870 conserved hypothetical protein; InterPro IPR010375; KEGG: dge:Dgeo_1670 hypothetical protein; PFAM: Protein of unknown function DUF970; SPTR: Nitrogen regulatory protein P-II related protein, DUF970; PFAM: Protein of unknown function (DUF970) YP_004170988.1 COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; InterPro IPR008616: IPR008532; KEGG: dge:Dgeo_1423 fibronectin-binding A-like protein; PFAM: Fibronectin-binding A, N-terminal; Domain of unknown function DUF814; SPTR: Fibronectin-binding A-like protein; PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA) YP_004170989.1 COGs: COG0853 Aspartate 1-decarboxylase; HAMAP: Aspartate decarboxylase; InterPro IPR003190; KEGG: dge:Dgeo_1422 aspartate alpha-decarboxylase; PFAM: Aspartate decarboxylase; PRIAM: Aspartate 1-decarboxylase; SPTR: Aspartate 1-decarboxylase; TIGRFAM: Aspartate decarboxylase; PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase YP_004170990.1 InterPro IPR000182; KEGG: dge:Dgeo_0794 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004170991.1 COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006140; KEGG: dge:Dgeo_0793 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PRIAM: Glyoxylate reductase (NADP(+)); SPTR: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YP_004170992.1 COGs: COG1640 4-alpha-glucanotransferase; InterPro IPR003385; KEGG: ddr:Deide_16980 4-alpha-glucanotransferase; PFAM: Glycoside hydrolase, family 77; PRIAM: 4-alpha-glucanotransferase; SPTR: 4-alpha-glucanotransferase (Dextrin glycosyltransferase); TIGRFAM: Glycoside hydrolase, family 77; PFAM: 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase YP_004170993.1 COGs: COG2096 conserved hypothetical protein; InterPro IPR017858: IPR002779; KEGG: dge:Dgeo_0666 cobalamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: Cobalamin adenosyltransferase; TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase YP_004170994.1 COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: ddr:Deide_16990 N-acetylmuramoyl-L-alanine amidase, precursor; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: N-acetylmuramoyl-L-alanine amidase,; manually curated; PFAM: N-acetylmuramoyl-L-alanine amidase YP_004170995.1 KEGG: dra:DR_1388 hypothetical protein; SPTR: uncharacterized protein YP_004170996.1 KEGG: gdi:GDI_3508 autotransporter protein; SPTR: autotransporter protein YP_004170997.1 COGs: COG2367 Beta-lactamase class A; KEGG: dge:Dgeo_1291 beta-lactamase, SPTR: Beta-lactamase YP_004170998.1 COGs: COG1307 conserved hypothetical protein; InterPro IPR003797; KEGG: dge:Dgeo_1292 DegV family protein; PFAM: DegV; SPTR: DegV family protein; TIGRFAM: DegV; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family YP_004170999.1 COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR000760; KEGG: dge:Dgeo_0795 inositol monophosphatase; PFAM: Inositol monophosphatase; SPTR: Inositol monophosphatase; manually curated; PFAM: Inositol monophosphatase family; TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase, bacterial YP_004171000.1 COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; InterPro IPR004523: IPR004365: IPR004364; KEGG: ddr:Deide_10020 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Aspartate--tRNA ligase; SPTR: Aspartate--tRNA ligase (Aspartic acid translase); TIGRFAM: Aspartyl-tRNA synthetase, class IIb, archea/euk type; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, archaeal type YP_004171001.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: dge:Dgeo_0798 hydrolase, SPTR: Alpha/beta superfamily hydrolase; PFAM: Prolyl oligopeptidase family YP_004171002.1 KEGG: ddr:Deide_16720 hypothetical protein; SPTR: uncharacterized protein YP_004171003.1 KEGG: bcv:Bcav_2379 CopG domain protein DNA-binding domain protein; SPTR: CopG domain protein DNA-binding domain protein; PFAM: Ribbon-helix-helix protein, copG family YP_004171004.1 COGs: COG4586 ABC-type uncharacterized transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: dra:DR_1581 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter YP_004171005.1 COGs: COG4587 ABC-type uncharacterized transport system permease component; InterPro IPR010390; KEGG: ddr:Deide_10080 ABC transporter, permease component; PFAM: Protein of unknown function DUF990; SPTR: ABC transporter, permease component; PFAM: Protein of unknown function (DUF990) YP_004171006.1 COGs: COG3694 ABC-type uncharacterized transport system permease component; InterPro IPR010390; KEGG: ddr:Deide_10090 ABC transporter, permease component; PFAM: Protein of unknown function DUF990; SPTR: ABC transporter, permease component; PFAM: Protein of unknown function (DUF990) YP_004171007.1 KEGG: aba:Acid345_1556 hydrogenase expression/formation protein HypA YP_004171008.1 KEGG: mta:Moth_0338 hypothetical protein; SPTR: Autotransporter-associated beta strand repeat protein YP_004171009.1 COGs: COG1026 Zn-dependent peptidase insulinase-like; InterPro IPR011765: IPR007863: IPR013578; KEGG: dge:Dgeo_1643 peptidase M16C associated; PFAM: Peptidase M16C associated; Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase M16C associated; PFAM: Peptidase M16C associated; Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_004171010.1 InterPro IPR008009; KEGG: ddr:Deide_05420 hypothetical protein; PFAM: Ig; SPTR: uncharacterized protein YP_004171011.1 KEGG: dge:Dgeo_1645 hypothetical protein; SPTR: uncharacterized protein YP_004171012.1 KEGG: dge:Dgeo_1646 hypothetical protein; SPTR: uncharacterized protein YP_004171013.1 KEGG: dge:Dgeo_2018 hypothetical protein; SPTR: uncharacterized protein YP_004171014.1 COGs: COG2501 conserved hypothetical protein; InterPro IPR002942; KEGG: ddr:Deide_05390 hypothetical protein; PFAM: RNA-binding S4; SPTR: uncharacterized protein; PFAM: S4 domain YP_004171015.1 COGs: COG3358 conserved hypothetical protein; InterPro IPR012467; KEGG: dge:Dgeo_1648 hypothetical protein; PFAM: Protein of unknown function DUF1684; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1684) YP_004171016.1 COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: dra:DR_1389 competence protein ComF, PFAM: Phosphoribosyltransferase; SPTR: Competence protein ComF, ; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein YP_004171017.1 KEGG: dge:Dgeo_0937 hypothetical protein; SPTR: uncharacterized protein YP_004171018.1 COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR000524: IPR004839; KEGG: dge:Dgeo_1430 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR; SPTR: Transcriptional regulator, GntR family; PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family YP_004171019.1 COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: ddr:Deide_21760 oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: oxidoreductase; PFAM: short chain dehydrogenase YP_004171020.1 KEGG: bss:BSUW23_03770 metal efflux transporter; SPTR: uncharacterized protein YP_004171021.1 KEGG: dra:DR_1786 hypothetical protein; SPTR: uncharacterized protein YP_004171022.1 KEGG: rme:Rmet_4527 spermine synthase; SPTR: MMPL domain protein YP_004171023.1 COGs: COG1092 SAM-dependent methyltransferase; InterPro IPR002478; KEGG: ddr:Deide_12770 hypothetical protein; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: uncharacterized protein; PFAM: S-adenosylmethionine-dependent methyltransferase YP_004171024.1 COGs: COG1533 DNA repair photolyase; KEGG: tra:Trad_0284 radical SAM domain-containing protein; SPTR: Radical SAM domain-containing protein YP_004171025.1 COGs: COG0327 conserved hypothetical protein; InterPro IPR002678; KEGG: dra:DR_2466 hypothetical protein; PFAM: NGG1p interacting factor 3, NIF3; SPTR: uncharacterized protein; PFAM: NIF3 (NGG1p interacting factor 3) YP_004171026.1 COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: dge:Dgeo_0970 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004171027.1 KEGG: ddr:Deide_12771 conserved hypothetical protein, precursor; SPTR: uncharacterized protein YP_004171028.1 COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: dra:DR_1209 bacterioferritin comigratory protein; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; SPTR: Bacterioferritin comigratory protein; PFAM: AhpC/TSA family YP_004171029.1 COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterPro IPR011810: IPR003135: IPR013221: IPR004101; KEGG: ddr:Deide_1p00390 cyanophycin synthetase; PFAM: Mur ligase, central; ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; Mur ligase, C-terminal; PRIAM: Cyanophycin synthase (L-aspartate-adding); SPTR: cyanophycin synthetase; TIGRFAM: Cyanophycin synthetase; PFAM: RimK-like ATP-grasp domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: cyanophycin synthetase; glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_004171030.1 COGs: COG1446 Asparaginase; InterPro IPR000246; KEGG: ddr:Deide_2p01270 asparaginase (L-asparaginase); PFAM: Peptidase T2, asparaginase 2; PRIAM: Asparaginase; SPTR: asparaginase (L-asparaginase); PFAM: Asparaginase YP_004171031.1 COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; HAMAP: Lysidine-tRNA(Ile) synthetase; InterProIPR012094: IPR012795: IPR012796: IPR011063: IPR 002125; KEGG: dge:Dgeo_0991 tRNA(Ile)-lysidine synthetase-like protein; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase; CMP/dCMP deaminase, zinc-binding; SMART: Lysidine-tRNA(Ile) synthetase, C-terminal; SPTR: tRNA(Ile)-lysidine synthase; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; Lysidine-tRNA(Ile) synthetase, C-terminal; PFAM: TilS substrate C-terminal domain; PP-loop family; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: tRNA(Ile)-lysidine synthetase, C-terminal domain; tRNA(Ile)-lysidine synthetase, N-terminal domain YP_004171032.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: ddr:Deide_12720 oxidoreductase, short-chain dehydrogenase/reductase family; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-ACP reductase; SPTR: Oxidoreductase, short-chain dehydrogenase/reductase family; PFAM: short chain dehydrogenase YP_004171033.1 COGs: COG0546 phosphatase; InterPro IPR006402: IPR006439: IPR005834; KEGG: dge:Dgeo_0689 HAD family hydrolase; PFAM: haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_004171034.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: dge:Dgeo_1421 PfkB; PFAM: Carbohydrate/purine kinase; PRIAM: Fructokinase; SPTR: Fructokinase, ScrK; PFAM: pfkB family carbohydrate kinase YP_004171035.1 COGs: COG0782 Transcription elongation factor; InterPro IPR001437; KEGG: dra:DR_2375 transcription elongation factor; PFAM: Transcription elongation factor, GreA/GreB, C-terminal; SPTR: Transcription elongation factor; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term YP_004171036.1 KEGG: msv:Mesil_2874 hypothetical protein; SPTR: uncharacterized protein YP_004171037.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: dge:Dgeo_0589 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type sugar transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004171038.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: dge:Dgeo_0590 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type sugar transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004171039.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: dge:Dgeo_0591 extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein YP_004171040.1 COGs: COG2865 transcriptional regulator protein; KEGG: dge:Dgeo_0592 transcriptional regulator; SPTR: Transcriptional regulator, Schlafen-like ATPase amd DNA-binding HTH domain YP_004171041.1 KEGG: dge:Dgeo_0593 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3293) YP_004171042.1 KEGG: ddr:Deide_14300 conserved hypothetical protein, precursor; SPTR: uncharacterized protein YP_004171043.1 COGs: COG0585 conserved hypothetical protein; HAMAP: Pseudouridine synthase, TruD; InterPro IPR001656; KEGG: dge:Dgeo_0594 pseudouridylate synthase; PFAM: Pseudouridine synthase, TruD; SPTR: tRNA pseudouridine synthase D; TIGRFAM: Pseudouridine synthase, TruD; PFAM: tRNA pseudouridine synthase D (TruD); TIGRFAM: tRNA pseudouridine synthase, TruD family YP_004171044.1 InterPro IPR000182; KEGG: kfl:Kfla_5658 hypothetical protein; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: uncharacterized protein YP_004171045.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR000014: IPR000160: IPR003018: IPR013656: IPR 001633; KEGG: mpo:Mpop_2088 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-4; GAF; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; GAF; PAS; SPTR: Sensory box/ggdef family protein; TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: EAL domain; GGDEF domain; GAF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain YP_004171046.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160: IPR003018; KEGG: ddr:Deide_2p01040 diguanylate-cyclase; PFAM: Diguanylate cyclase, predicted; GAF; SMART: Diguanylate cyclase, predicted; GAF; SPTR: diguanylate-cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004171047.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: ddr:Deide_22120 regulator protein, GGDEF domain; membrane protein; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: regulator protein, GGDEF domain; membrane protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004171048.1 COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR022687: IPR001367: IPR007167: IPR022689; KEGG: ddr:Deide_3p02021 iron dependent repressor; PFAM: Iron dependent repressor; Iron dependent repressor, N-terminal; Ferrous iron transporter, FeoA subunit; SMART: Iron dependent repressor, diptheria toxin type; Ferrous iron transporter, FeoA subunit; SPTR: iron dependent repressor; PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain YP_004171049.1 KEGG: nwa:Nwat_1848 citrate transporter; SPTR: Citrate transporter YP_004171050.1 KEGG: mpo:Mpop_4017 IucA/IucC family protein; SPTR: Glucokinase YP_004171051.1 COGs: COG2206 HD-GYP domain; InterProIPR000014: IPR000160: IPR013656: IPR006674: IPR 003018: IPR003607; KEGG: ddr:Deide_3p00240 metal dependent phosphohydrolase; PFAM: Diguanylate cyclase, predicted; PAS fold-4; Metal-dependent phosphohydrolase, HD subdomain; SMART: Diguanylate cyclase, predicted; GAF; Metal-dependent phosphohydrolase, HD domain; SPTR: metal dependent phosphohydrolase; TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: HD domain; GGDEF domain; GAF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain YP_004171052.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000014: IPR000160: IPR013656; KEGG: ddr:Deide_2p00540 response regulator, CheY , response regulator PleD; PFAM: Diguanylate cyclase, predicted; PAS fold-4; SMART: Diguanylate cyclase, predicted; PAS; SPTR: response regulator, CheY , response regulator pleD; TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain YP_004171053.1 KEGG: nfi:NFIA_080390 hypothetical protein; SPTR: uncharacterized protein YP_004171054.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR004638: IPR011701; KEGG: dge:Dgeo_2674 EmrB/QacA family drug resistance transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Drug resistance transporter EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily YP_004171055.1 InterPro IPR000835; KEGG: dge:Dgeo_2675 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; PFAM: Uncharacterized protein conserved in archaea (DUF2250) YP_004171056.1 InterPro IPR004360; KEGG: ddr:Deide_18370 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_004171057.1 KEGG: tad:TRIADDRAFT_58289 hypothetical protein; SPTR: uncharacterized protein YP_004171058.1 COGs: COG1098 RNA binding protein (contains ribosomal protein S1 domain); InterPro IPR003029: IPR022967; KEGG: ddr:Deide_10410 ribosomal protein S1-like RNA-binding domain protein; PFAM: ribosomal protein S1, RNA-binding domain; SMART: RNA-binding domain, S1; SPTR: uncharacterized protein; PFAM: S1 RNA binding domain YP_004171059.1 COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR005904: IPR000836; KEGG: dge:Dgeo_1588 hypoxanthine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: Hypoxanthine phosphoribosyltransferase; TIGRFAM: Hypoxanthine phosphoribosyl transferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase YP_004171060.1 COGs: COG0134 Indole-3-glycerol phosphate synthase; InterPro IPR013798; KEGG: dge:Dgeo_1587 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; PRIAM: Indole-3-glycerol-phosphate synthase; SPTR: Indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase YP_004171061.1 COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; InterPro IPR001279; KEGG: dge:Dgeo_1586 beta-lactamase-like protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: Beta-lactamase-like protein; PFAM: Metallo-beta-lactamase superfamily YP_004171062.1 COGs: COG1495 Disulfide bond formation protein DsbB; InterPro IPR003752; KEGG: dge:Dgeo_0691 disulphide bond formation protein DsbB; PFAM: Disulphide bond formation protein DsbB/BdbC; SPTR: Disulphide bond formation protein DsbB; PFAM: Disulfide bond formation protein DsbB YP_004171063.1 COGs: COG1651 Protein-disulfide isomerase; InterPro IPR001853; KEGG: dge:Dgeo_0692 DsbA oxidoreductase; PFAM: DSBA-like thioredoxin domain; SPTR: DSBA oxidoreductase; PFAM: DSBA-like thioredoxin domain YP_004171064.1 KEGG: dge:Dgeo_0693 hypothetical protein; SPTR: uncharacterized protein YP_004171065.1 COGs: COG0178 Excinuclease ATPase subunit; HAMAP: Excinuclease ABC, A subunit; InterPro IPR004602: IPR003439: IPR003593; KEGG: ddr:Deide_12760 excinuclease ABC subunit A; PFAM: ABC transporter-like; SPTR: UvrABC system protein A (Excinuclease ABC, subunit A); TIGRFAM: Excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit YP_004171066.1 InterPro IPR000182; KEGG: lsp:Bsph_0653 acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004171067.1 COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; InterPro IPR004588; KEGG: ddr:Deide_12150 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; SPTR: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_004171068.1 KEGG: dge:Dgeo_0705 hypothetical protein; SPTR: uncharacterized protein YP_004171069.1 KEGG: dra:DR_1050 hypothetical protein; SPTR: uncharacterized protein YP_004171070.1 COGs: COG0024 Methionine aminopeptidase; InterPro IPR002467: IPR000994; KEGG: dge:Dgeo_1284 methionine aminopeptidase, type I; PFAM: Peptidase M24, structural domain; PRIAM: Methionyl aminopeptidase; SPTR: Methionine aminopeptidase; TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I YP_004171071.1 KEGG: dge:Dgeo_1195 hypothetical protein; SPTR: uncharacterized protein YP_004171072.1 COGs: COG0497 ATPase involved in DNA repair; InterPro IPR004604: IPR003395; KEGG: dge:Dgeo_1194 DNA repair protein RecN; PFAM: RecF/RecN/SMC; SPTR: DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN YP_004171073.1 COGs: COG3881 conserved hypothetical protein; InterPro IPR007903; KEGG: dge:Dgeo_1677 PRC-barrel domain-containing protein; PFAM: PRC-barrel; SPTR: PRC-barrel domain protein; PFAM: PRC-barrel domain YP_004171075.1 KEGG: dge:Dgeo_1678 hypothetical protein; SPTR: P-loop ATPase YP_004171076.1 COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341: IPR013342; KEGG: dge:Dgeo_1679 mandelate racemase/muconate lactonizing-like protein; PFAM: mandelate racemase/muconate lactonizing enzyme, C-terminal; mandelate racemase/muconate lactonizing enzyme, N-terminal; SMART: mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: mandelate racemase/muconate lactonizing enzyme-like protein; PFAM: mandelate racemase / muconate lactonizing enzyme, C-terminal domain; mandelate racemase / muconate lactonizing enzyme, N-terminal domain YP_004171077.1 KEGG: ddr:Deide_07940 hypothetical protein; SPTR: uncharacterized protein YP_004171078.1 KEGG: dra:DR_1729 hypothetical protein; SPTR: uncharacterized protein YP_004171079.1 COGs: COG1048 Aconitase A; InterPro IPR006249: IPR001030: IPR000573; KEGG: ddr:Deide_07920 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; PRIAM: Aconitate hydratase; SPTR: aconitate hydratase (Citrate hydro-lyase) (Aconitase); TIGRFAM: Aconitase/iron regulatory protein 2; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase 1 YP_004171080.1 KEGG: dge:Dgeo_1220 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004171081.1 COGs: COG2720 Uncharacterized vancomycin resistance protein; InterPro IPR007391; KEGG: dge:Dgeo_1593 VanW; PFAM: Vancomycin resistance VanW; SPTR: VanW; PFAM: peptidoglycan binding domain; VanW like protein YP_004171082.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092: IPR006091: IPR006090; KEGG: dge:Dgeo_0812 acyl-CoA dehydrogenase-like protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase-like protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_004171083.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR001808; KEGG: dge:Dgeo_0968 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding domain; SPTR: Transcriptional regulator, Crp/Fnr family; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain YP_004171084.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: dge:Dgeo_0967 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type transport system, ATPase component; PFAM: ABC transporter YP_004171085.1 InterPro IPR001119; KEGG: dge:Dgeo_1597 S-layer-like protein region; PFAM: S-layer homology domain; SPTR: S-layer-like protein region; PFAM: S-layer homology domain YP_004171087.1 COGs: COG0813 Purine-nucleoside phosphorylase; InterPro IPR000845; KEGG: dge:Dgeo_1596 purine phosphorylases family protein 1; PFAM: Nucleoside phosphorylase domain; PRIAM: Purine-nucleoside phosphorylase; SPTR: Purine and other phosphorylase, family 1; PFAM: Phosphorylase superfamily; TIGRFAM: purine-nucleoside phosphorylase, family 1 (deoD) YP_004171088.1 COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: dge:Dgeo_1595 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; PRIAM: 3-hydroxybutyryl-CoA dehydratase; SPTR: enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase family YP_004171089.1 COGs: COG3294 conserved hypothetical protein; KEGG: dge:Dgeo_1594 hypothetical protein; SPTR: HD supefamily hydrolase YP_004171090.1 COGs: COG3236 conserved hypothetical protein; InterPro IPR012816; KEGG: scl:sce3364 hypothetical protein; PFAM: Conserved hypothetical protein CHP02464; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02464; PFAM: Domain of unknown function (DUF1768); TIGRFAM: conserved hypothetical protein, ribA/ribD-fused YP_004171091.1 COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006098: IPR006099; KEGG: dge:Dgeo_0862 methylmalonyl-CoA mutase, alpha subunit; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase, alpha subunit; TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain YP_004171092.1 KEGG: bcv:Bcav_3369 transcriptional regulator, LuxR family; SPTR: Transcriptional regulator, LuxR family YP_004171093.1 COGs: COG1217 membrane GTPase involved in stress response; InterProIPR005225: IPR006298: IPR000795: IPR004161: IPR 000640; KEGG: ddr:Deide_11340 GTP-binding TypA/BipA protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; SMART: Translation elongation factor EFG/EF2, C-terminal; SPTR: GTP-binding TypA/BipA protein; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain; translation elongation factor TU YP_004171094.1 KEGG: dra:DR_1679 N-methyl-transferase-related protein; SPTR: N-methyl-transferase-related protein YP_004171095.1 COGs: COG3012 conserved hypothetical protein; HAMAP: Uncharacterised protein family UPF0225; InterPro IPR023006: IPR004027; KEGG: lhk:LHK_01817 sec-C motif domain protein; PFAM: SEC-C motif; SPTR: UPF0225 protein LHK_01817; manually curated; PFAM: SEC-C motif YP_004171096.1 COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: ddr:Deide_10321 rRNA (adenosine-2-O-)-methyltransferase (SpoU rRNA methylase); PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: rRNA (Adenosine-2-O-)-methyltransferase (SpoU rRNA methylase); PFAM: SpoU rRNA Methylase family YP_004171097.1 KEGG: ddr:Deide_10330 hypothetical protein; SPTR: uncharacterized protein YP_004171098.1 COGs: COG0448 ADP-glucose pyrophosphorylase; HAMAP: Glucose-1-phosphate adenylyltransferase GlgC, bacterial; InterPro IPR023049: IPR011831: IPR005835; KEGG: dge:Dgeo_0861 glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate adenylyltransferase; SPTR: Glucose-1-phosphate adenylyltransferase; TIGRFAM: Glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate adenylyltransferase YP_004171099.1 COGs: COG0730 permease; InterPro IPR002781; KEGG: dge:Dgeo_0842 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: uncharacterized protein; PFAM: Sulfite exporter TauE/SafE YP_004171100.1 KEGG: ddr:Deide_21590 hypothetical protein; SPTR: uncharacterized protein YP_004171101.1 COGs: COG0225 Peptide methionine sulfoxide reductase; HAMAP: Peptide methionine sulphoxide reductase MsrA; InterPro IPR002569; KEGG: dge:Dgeo_0843 peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA; PRIAM: Peptide-methionine (S)-S-oxide reductase; SPTR: Peptide methionine sulfoxide reductase msrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; PFAM: Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase YP_004171102.1 KEGG: ptr:473067 tetratricopeptide repeat domain 16; SPTR: cDNA FLJ53499, highly similar to Tetratricopeptide repeat protein 16 YP_004171103.1 KEGG: dge:Dgeo_0677 hypothetical protein; SPTR: uncharacterized protein YP_004171104.1 COGs: COG2258 conserved hypothetical protein; InterPro IPR005302; KEGG: mrb:Mrub_1774 MOSC domain-containing protein; PFAM: Molybdenum cofactor sulfurase, C-terminal; SPTR: MOSC domain containing protein; PFAM: MOSC domain YP_004171105.1 COGs: COG3793 tellurite resistance protein; InterPro IPR007791; KEGG: kra:Krad_3770 tellurite resistance TerB; PFAM: Heat shock protein DnaJ-like protein DjlA; SPTR: tellurite resistance TerB; PFAM: tellurite resistance protein TerB YP_004171106.1 InterPro IPR007499; KEGG: dvu:DVU2032 ERF family protein; PFAM: ERF; SPTR: ERF family protein; PFAM: ERF superfamily YP_004171107.1 KEGG: dse:Dsec_GM24170 GM24170 gene product from transcript GM24170-RA; SPTR: Type I secretion target repeat protein YP_004171108.1 KEGG: kra:Krad_1598 protein of unknown function DUF322; SPTR: uncharacterized protein YP_004171109.1 COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR002302: IPR015413: IPR013155; KEGG: dge:Dgeo_0567 leucyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); Valyl/Leucyl/isoleucyl-tRNA synthetase, class I, anticodon-binding; SPTR: Leucyl-tRNA synthetase; TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family YP_004171110.1 InterPro IPR000182; KEGG: tra:Trad_1889 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004171111.1 COGs: COG1866 Phosphoenolpyruvate carboxykinase (ATP); HAMAP: Phosphoenolpyruvate carboxykinase, ATP-utilising; InterPro IPR001272; KEGG: dge:Dgeo_1196 phosphoenolpyruvate carboxykinase; PFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; PRIAM: Phosphoenolpyruvate carboxykinase (ATP); SPTR: Phosphoenolpyruvate carboxykinase [ATP]; TIGRFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; PFAM: Phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP) YP_004171112.1 COGs: COG4278 conserved hypothetical protein; KEGG: ana:all3127 hypothetical protein; SPTR: uncharacterized protein YP_004171113.1 KEGG: sbi:SORBI_05g004930 hypothetical protein; SPTR: uncharacterized protein Sb05g004930 YP_004171114.1 COGs: COG2267 Lysophospholipase; InterPro IPR000073; KEGG: dge:Dgeo_0525 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold; PFAM: lysophospholipase YP_004171115.1 COGs: COG0366 Glycosidase; InterPro IPR012810: IPR006047: IPR006589; KEGG: dra:DR_2036 trehalose synthase, PFAM: Glycosyl hydrolase, family 13, catalytic domain; PRIAM: Maltose alpha-D-glucosyltransferase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Trehalose synthase, ; TIGRFAM: Trehalose synthase/alpha-amylase, N-terminal; PFAM: Alpha amylase, catalytic domain; TIGRFAM: trehalose synthase YP_004171116.1 COGs: COG0670 Integral membrane protein interacts with FtsH; InterPro IPR006214; KEGG: dge:Dgeo_0538 hypothetical protein; PFAM: Inhibitor of apoptosis-promoting Bax1-related; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family UPF0005 YP_004171117.1 COGs: COG3280 Maltooligosyl trehalose synthase; InterPro IPR012767: IPR006047: IPR006589; KEGG: dge:Dgeo_0539 malto-oligosyltrehalose synthase; PFAM: Glycosyl hydrolase, family 13, catalytic domain; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Malto-oligosyltrehalose synthase; TIGRFAM: Malto-oligosyltrehalose synthase; PFAM: Alpha amylase, catalytic domain; TIGRFAM: malto-oligosyltrehalose synthase YP_004171118.1 COGs: COG0296 1 4-alpha-glucan branching enzyme; InterPro IPR012768: IPR004193: IPR006047: IPR006589; KEGG: dge:Dgeo_0540 malto-oligosyltrehalose trehalohydrolase; PFAM: Glycosyl hydrolase, family 13, catalytic domain; Glycoside hydrolase, family 13, N-terminal; PRIAM: 4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Malto-oligosyltrehalose trehalohydrolase; TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; PFAM: Alpha amylase, catalytic domain; Domain of unknown function (DUF3459); TIGRFAM: malto-oligosyltrehalose trehalohydrolase YP_004171119.1 COGs: COG1523 Type II secretory pathway pullulanase PulA and related glycosidase; InterPro IPR011837: IPR004193: IPR006047: IPR006589; KEGG: dge:Dgeo_0541 glycogen debranching protein GlgX; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain; PRIAM: Isoamylase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Glycogen debranching enzyme GlgX; TIGRFAM: Glycogen debranching enzyme; PFAM: Alpha amylase, catalytic domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); TIGRFAM: glycogen debranching enzyme GlgX YP_004171120.1 KEGG: ddr:Deide_16551 hypothetical protein; SPTR: uncharacterized protein YP_004171121.1 COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; InterPro IPR010067: IPR015168; KEGG: dge:Dgeo_0543 ABC transporter, substrate-binding protein, aliphatic sulphonates; SPTR: ABC transporter, substrate-binding protein, aliphatic sulphonate; TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulphonates; PFAM: NMT1/THI5 like; TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulfonates family YP_004171122.1 COGs: COG4106 Trans-aconitate methyltransferase; InterPro IPR013216; KEGG: dra:DR_0422 hypothetical protein; PFAM: Methyltransferase type 11; PRIAM: Trans-aconitate 2-methyltransferase; SPTR: Trans-aconitate 2-methyltransferase; PFAM: Methyltransferase domain YP_004171123.1 COGs: COG0060 isoleucyl-tRNA synthetase; HAMAP: isoleucyl-tRNA synthetase, class Ia; InterPro IPR002301: IPR002300: IPR013155; KEGG: dge:Dgeo_1101 isoleucyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/isoleucyl-tRNA synthetase, class I, anticodon-binding; PRIAM: isoleucine--tRNA ligase; SPTR: isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: isoleucyl-tRNA synthetase YP_004171124.1 COGs: COG0024 Methionine aminopeptidase; InterPro IPR002467: IPR000994; KEGG: dge:Dgeo_1914 methionine aminopeptidase, type I; PFAM: Peptidase M24, structural domain; PRIAM: Methionyl aminopeptidase; SPTR: Methionine aminopeptidase; TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I YP_004171125.1 COGs: COG0176 Transaldolase; HAMAP: Transaldolase 3B, InterPro IPR022999: IPR004731: IPR001585; KEGG: ddr:Deide_11650 translaldolase; PFAM: Transaldolase; SPTR: Probable transaldolase; TIGRFAM: Transaldolase 3A/3B; PFAM: Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family YP_004171126.1 COGs: COG1158 Transcription termination factor; InterProIPR004665: IPR011112: IPR011113: IPR000194: IPR 011129: IPR003593; KEGG: dge:Dgeo_1103 transcription termination factor Rho; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; SMART: ATPase, AAA+ type, core; Rho termination factor, N-terminal; Cold shock protein; SPTR: Transcription termination factor Rho; TIGRFAM: Transcription termination factor Rho; PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho YP_004171127.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR018392: IPR016047: IPR002482; KEGG: dge:Dgeo_1104 peptidase M23B; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidase M23B and LisM domains; PFAM: Peptidase family M23; LysM domain YP_004171128.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: dge:Dgeo_1105 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain YP_004171129.1 COGs: COG0797 lipoprotein; InterPro IPR012997: IPR018392: IPR009009: IPR002482; KEGG: ddr:Deide_11721 lysin (LysM) and rare lipoprotein A (RlpA) domains-containing protein, precursor; PFAM: Barwin-related endoglucanase; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Lysin (LysM) and rare lipoprotein A (RlpA) domains-containing protein,; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; LysM domain; TIGRFAM: rare lipoprotein A YP_004171130.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000587: IPR000994; KEGG: dra:DR_1246 proline dipeptidase; PFAM: Peptidase M24, structural domain; Creatinase; SPTR: Proline dipeptidase; manually curated; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain YP_004171131.1 COGs: COG0149 Triosephosphate isomerase; InterPro IPR000652; KEGG: ddr:Deide_11390 triosephosphate isomerase; PFAM: Triosephosphate isomerase; PRIAM: Triose-phosphate isomerase; SPTR: Triosephosphate isomerase; TIGRFAM: Triosephosphate isomerase; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase YP_004171132.1 COGs: COG0126 3-phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; InterPro IPR001576; KEGG: dge:Dgeo_1134 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; PRIAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase YP_004171133.1 COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR020828: IPR020829: IPR006424; KEGG: ddr:Deide_11420 glyceraldehyde-3-phosphate dehydrogenase (GAPDH); PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; SPTR: glyceraldehyde-3-phosphate dehydrogenase (GAPDH); TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I YP_004171134.1 COGs: COG4845 Chloramphenicol O-acetyltransferase; InterPro IPR001707; KEGG: hau:Haur_2115 chloramphenicol O-acetyltransferase; PFAM: Chloramphenicol acetyltransferase; SPTR: Chloramphenicol O-acetyltransferase; PFAM: Chloramphenicol acetyltransferase YP_004171135.1 COGs: COG0527 Aspartokinase; InterPro IPR001048: IPR002912: IPR005260: IPR001341; KEGG: dge:Dgeo_1127 aspartate kinase; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; SPTR: Aspartokinase; TIGRFAM: Aspartate kinase domain; Aspartate kinase, monofunctional class; PFAM: ACT domain; Amino acid kinase family; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase YP_004171136.1 KEGG: dia:Dtpsy_1691 GAF modulated sigma54 specific transcriptional regulator, fis family; SPTR: GAF modulated sigma54 specific transcriptional regulator, Fis family YP_004171137.1 COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR013200: IPR000150: IPR006379; KEGG: ddr:Deide_11360 Cof protein (HAD-superfamily hydrolase); PFAM: HAD superfamily hydrolase-like, type 3; SPTR: Cof protein (HAD-superfamily hydrolase); TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB YP_004171138.1 COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: dra:DR_0471 hypothetical protein; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; SPTR: uncharacterized protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 1; conserved hypothetical protein, DprA/Smf-related, family 2 YP_004171139.1 COGs: COG0384 epimerase PhzC/PhzF homolog; InterPro IPR003719; KEGG: dge:Dgeo_1137 phenazine biosynthesis PhzC/PhzF protein; PFAM: phenazine biosynthesis PhzC/PhzF protein; SPTR: phenazine biosynthesis PhzC/PhzF protein; TIGRFAM: phenazine biosynthesis PhzC/PhzF protein; PFAM: phenazine biosynthesis-like protein; TIGRFAM: phenazine biosynthesis protein PhzF family YP_004171140.1 COGs: COG0173 Aspartyl-tRNA synthetase; InterPro IPR004365: IPR004364: IPR004115: IPR004524; KEGG: ddr:Deide_11460 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain; PRIAM: Aspartate--tRNA ligase; SPTR: Aspartyl-tRNA synthetase; TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type YP_004171141.1 COGs: COG0124 histidyl-tRNA synthetase; HAMAP: histidyl-tRNA synthetase, class IIa, subgroup; InterPro IPR002314: IPR004154: IPR015807; KEGG: dra:DR_1349 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; PRIAM: histidine--tRNA ligase; SPTR: histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase, class IIa, subgroup; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase YP_004171142.1 InterPro IPR002909; KEGG: dge:Dgeo_1119 cell surface receptor IPT/TIG; PFAM: Cell surface receptor IPT/TIG; SPTR: Cell surface receptor IPT/TIG; PFAM: IPT/TIG domain YP_004171143.1 COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: ddr:Deide_11490 diacylglycerol kinase; PFAM: Diacylglycerol kinase, catalytic domain; SMART: Diacylglycerol kinase, catalytic domain; SPTR: diacylglycerol kinase; PFAM: Diacylglycerol kinase catalytic domain YP_004171144.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107: IPR002104; KEGG: dge:Dgeo_2776 phage integrase; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Phage integrase; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_004171145.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: dge:Dgeo_2501 histone-like DNA-binding protein; PFAM: histone-like bacterial DNA-binding protein; SMART: histone-like bacterial DNA-binding protein; SPTR: histone-like protein DNA-binding protein; PFAM: Bacterial DNA-binding protein YP_004171146.1 COGs: COG4712 conserved hypothetical protein; InterPro IPR007232; KEGG: dge:Dgeo_0977 Rad52/22 double-strand break repair protein; PFAM: Rad52/22 double-strand break repair protein; SPTR: Rad52/22 double-strand break repair protein; PFAM: Rad52/22 family double-strand break repair protein YP_004171148.1 COGs: COG1196 Chromosome segregation ATPase; InterPro IPR003395: IPR010935; KEGG: dge:Dgeo_0822 SMC protein-like protein; PFAM: RecF/RecN/SMC; SMCs flexible hinge; SMART: SMCs flexible hinge; SPTR: SMC protein; PFAM: RecF/RecN/SMC N terminal domain; SMC proteins Flexible Hinge Domain YP_004171149.1 InterPro IPR019606; KEGG: dge:Dgeo_0821 hypothetical protein; PFAM: GerMN domain; SMART: GerMN domain; SPTR: uncharacterized protein; PFAM: Sporulation and spore germination YP_004171150.1 COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: dge:Dgeo_0820 cell wall hydrolase/autolysin; PFAM: Cell wall hydrolase/autolysin, catalytic; SPTR: Cell wall hydrolase/autolysin; PFAM: N-acetylmuramoyl-L-alanine amidase YP_004171151.1 COGs: COG0691 tmRNA-binding protein; HAMAP: SsrA-binding protein; InterPro IPR000037; KEGG: dge:Dgeo_0819 SsrA-binding protein; PFAM: SsrA-binding protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein YP_004171152.1 COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; HAMAP: Asparaginyl-tRNA synthetase, class IIb; InterPro IPR004365: IPR004364: IPR004522; KEGG: ddr:Deide_11380 asparaginyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Asparagine--tRNA ligase; SPTR: Asparaginyl-tRNA synthetase; TIGRFAM: Asparaginyl-tRNA synthetase, class IIb; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase YP_004171153.1 KEGG: ddr:Deide_17290 S-layer-like protein array-related protein, precursor; SPTR: S-layer-like protein array-related protein YP_004171154.1 COGs: COG0815 Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; InterPro IPR003010: IPR004563; KEGG: dge:Dgeo_1116 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Apolipoprotein N-acyltransferase; TIGRFAM: Apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase; TIGRFAM: apolipoprotein N-acyltransferase YP_004171155.1 COGs: COG0622 phosphoesterase; InterPro IPR004843; KEGG: ddr:Deide_11520 phosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: phosphoesterase; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family YP_004171156.1 COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: ddr:Deide_21630 hypothetical protein; PFAM: SNARE associated Golgi protein; SPTR: uncharacterized protein; PFAM: SNARE associated Golgi protein YP_004171157.1 COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR000192; KEGG: dge:Dgeo_1114 serine--pyruvate transaminase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Serine--pyruvate transaminase; SPTR: Serine--pyruvate transaminase; PFAM: Aminotransferase class-V YP_004171158.1 KEGG: dra:DR_2073 hypothetical protein; SPTR: uncharacterized protein YP_004171159.1 COGs: COG0282 Acetate kinase; HAMAP: Acetate kinase; InterPro IPR000890: IPR004372; KEGG: toc:Toce_1048 acetate kinase; PFAM: Acetate/butyrate kinase; PRIAM: Acetate kinase; SPTR: Acetate kinase; TIGRFAM: Acetate kinase; PFAM: Acetokinase family; TIGRFAM: acetate kinase YP_004171160.1 InterPro IPR001279; KEGG: dge:Dgeo_1029 beta-lactamase-like protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: Beta-lactamase-like protein; PFAM: Metallo-beta-lactamase superfamily YP_004171161.1 COGs: COG3685 conserved hypothetical protein; InterPro IPR010287; KEGG: dge:Dgeo_1026 hypothetical protein; PFAM: Protein of unknown function DUF892; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF892) YP_004171162.1 COGs: COG0159 tryptophan synthase alpha chain; HAMAP: tryptophan synthase, alpha chain; InterPro IPR002028; KEGG: dge:Dgeo_1025 tryptophan synthase subunit alpha; PFAM: tryptophan synthase, alpha chain; PRIAM: tryptophan synthase; SPTR: tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha chain; PFAM: tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit YP_004171163.1 COGs: COG0133 tryptophan synthase beta chain; HAMAP: tryptophan synthase beta chain/beta chain-like; InterPro IPR001926: IPR006654: IPR023026; KEGG: dge:Dgeo_1024 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: tryptophan synthase; SPTR: tryptophan synthase beta chain; TIGRFAM: tryptophan synthase, beta chain; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, beta subunit YP_004171164.1 COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; HAMAP: Glutamyl-Q tRNA(Asp) synthetase; InterPro IPR020058: IPR022380; KEGG: dge:Dgeo_1023 glutamyl-tRNA synthetase, class Ic; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; SPTR: Glutamyl-Q tRNA(Asp) synthetase; TIGRFAM: Glutamyl-Q tRNA(Asp) synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-queuosine tRNA(Asp) synthetase YP_004171165.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR013655: IPR003018: IPR013767: IPR003661: IPR 003594: IPR000014: IPR001610; KEGG: ddr:Deide_21610 histidine kinase, classic; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; PAS fold-3; PAS fold; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAC motif; PAS; GAF; SPTR: histidine kinase, classic; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004171166.1 COGs: COG0366 Glycosidase; InterPro IPR006047: IPR006589; KEGG: dra:DR_1472 glycosy hydrolase; PFAM: Glycosyl hydrolase, family 13, catalytic domain; PRIAM: Cyclomaltodextrin glucanotransferase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Glycosyl hydrolase, family 13; PFAM: Alpha amylase, catalytic domain YP_004171167.1 COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834: IPR006402; KEGG: dra:DR_1344 hydrolase; PFAM: haloacid dehalogenase-like hydrolase; SPTR: Hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; Epoxide hydrolase N-terminal domain-like phosphatase YP_004171168.1 KEGG: cse:Cseg_0691 tol-pal system protein YbgF; SPTR: uncharacterized protein YP_004171169.1 COGs: COG2355 Zn-dependent dipeptidase microsomal dipeptidase homolog; InterPro IPR008257; KEGG: dge:Dgeo_1112 peptidase M19, renal dipeptidase; PFAM: Peptidase M19, renal dipeptidase; SPTR: Dipeptidase M19; PFAM: Membrane dipeptidase (Peptidase family M19) YP_004171170.1 COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: dge:Dgeo_1111 NLP/P60; PFAM: NLP/P60; SPTR: NLP/P60; PFAM: NlpC/P60 family YP_004171171.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: dge:Dgeo_1110 oxidoreductase-like protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase-like protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain YP_004171172.1 InterPro IPR000182; KEGG: ddr:Deide_19190 hypothetical protein; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: uncharacterized protein; PFAM: Acetyltransferase (GNAT) family YP_004171173.1 KEGG: rbi:RB2501_08665 argininosuccinate lyase; SPTR: uncharacterized protein YP_004171174.1 COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: dra:DR_1097 phosphoglycerate mutase, PFAM: histidine phosphatase superfamily, clade-1; SMART: histidine phosphatase superfamily, clade-1; SPTR: Phosphoglycerate mutase, ; PFAM: Phosphoglycerate mutase family YP_004171175.1 KEGG: hch:HCH_04343 hypothetical protein; SPTR: uncharacterized protein YP_004171176.1 KEGG: scb:SCAB_63521 hypothetical protein; SPTR: uncharacterized protein YP_004171177.1 InterPro IPR014942; KEGG: scl:sce3077 hypothetical protein; PFAM: Protein of unknown function DUF1814; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1814) YP_004171178.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR001440: IPR011717: IPR000160: IPR001633: IPR 019734; KEGG: ddr:Deide_03810 hypothetical protein; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; Tetratricopeptide repeat; SPTR: uncharacterized protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004171179.1 InterPro IPR000209; KEGG: dge:Dgeo_2836 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8, subtilisin; PFAM: Subtilase family YP_004171180.1 COGs: COG0322 Nuclease subunit of the excinuclease complex; HAMAP: Excinuclease ABC, C subunit; InterPro IPR000305: IPR001943: IPR001162: IPR004791; KEGG: dra:DR_1354 excinuclease ABC subunit C; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; SMART: Excinuclease ABC, C subunit, N-terminal; SPTR: UvrABC system protein C; TIGRFAM: Excinuclease ABC, C subunit; PFAM: UvrB/uvrC motif; UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit YP_004171181.1 KEGG: ddr:Deide_03320 hypothetical protein; SPTR: uncharacterized protein YP_004171182.1 KEGG: nda:Ndas_0503 hypothetical protein; SPTR: uncharacterized protein YP_004171183.1 COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: dge:Dgeo_2853 hypothetical protein; PFAM: Diacylglycerol kinase, catalytic domain; SMART: Diacylglycerol kinase, catalytic domain; SPTR: Diacylglycerol kinase family enzyme; PFAM: Diacylglycerol kinase catalytic domain YP_004171184.1 COGs: COG1164 Oligoendopeptidase F; InterPro IPR013647: IPR001567: IPR004438; KEGG: dge:Dgeo_1084 oligoendopeptidase F; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; Peptidase M3B, oligopeptidase F, N-terminal; SPTR: Oligoendopeptidase F; TIGRFAM: Peptidase M3B, oligoendopeptidase F; PFAM: Oligopeptidase F; Peptidase family M3; TIGRFAM: oligoendopeptidase F YP_004171185.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dge:Dgeo_1109 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold YP_004171186.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dra:DR_1352 dihydrolipoamide acetyltransferase-related protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Dihydrolipoamide acetyltransferase-related protein; PFAM: alpha/beta hydrolase fold YP_004171187.1 COGs: COG0311 glutamine amidotransferase involved in pyridoxine biosynthesis; HAMAP: Glutamine amidotransferase subunit PdxT; InterPro IPR002161; KEGG: dge:Dgeo_1107 glutamine amidotransferase subunit PdxT; PFAM: Glutamine amidotransferase subunit PdxT; SPTR: Glutamine amidotransferase subunit pdxT; TIGRFAM: Glutamine amidotransferase subunit PdxT; PFAM: SNO glutamine amidotransferase family; TIGRFAM: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 YP_004171188.1 COGs: COG0214 Pyridoxine biosynthesis enzyme; HAMAP: Vitamin B6 biosynthesis protein; InterPro IPR001852; KEGG: dge:Dgeo_1106 pyridoxal biosynthesis lyase PdxS; PFAM: Vitamin B6 biosynthesis protein; SPTR: Pyridoxal biosynthesis lyase pdxS; TIGRFAM: Vitamin B6 biosynthesis protein; PFAM: SOR/SNZ family; TIGRFAM: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 YP_004171189.1 KEGG: dge:Dgeo_1085 hypothetical protein; SPTR: uncharacterized protein YP_004171190.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR001440: IPR000160: IPR019734; KEGG: tra:Trad_1758 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; Tetratricopeptide TPR-1; SMART: Diguanylate cyclase, predicted; Tetratricopeptide repeat; SPTR: Diguanylate cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004171191.1 COGs: COG3835 Sugar diacid utilization regulator; KEGG: dge:Dgeo_2412 hypothetical protein; SPTR: Regulatory protein of LrpR family YP_004171192.1 COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529: IPR012684; KEGG: aac:Aaci_0337 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; PFAM: Fumarylacetoacetase, C-terminal-like; PRIAM: 5-carboxymethyl-2-hydroxymuconate Delta-isomerase; SPTR: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit; PFAM: Fumarylacetoacetate (FAA) hydrolase family; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit YP_004171193.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590: IPR011985; KEGG: dge:Dgeo_2416 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; PRIAM: Betaine-aldehyde dehydrogenase; SPTR: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YP_004171194.1 COGs: COG2368 Aromatic ring hydroxylase; InterPro IPR004925: IPR012687; KEGG: dge:Dgeo_2418 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component; PFAM: 4-hydroxyphenylacetate 3-hydroxylase; SPTR: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component; TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component; PFAM: 4-hydroxyphenylacetate 3-hydroxylase N terminal; 4-hydroxyphenylacetate 3-hydroxylase C terminal; TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component YP_004171195.1 InterPro IPR004360: IPR011981; KEGG: dge:Dgeo_2419 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; PRIAM: Catechol 2,3-dioxygenase; SPTR: 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase YP_004171196.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: dge:Dgeo_2500 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; SPTR: Aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family YP_004171197.1 COGs: COG3971 2-keto-4-pentenoate hydratase; InterPro IPR002529: IPR012690; KEGG: pap:PSPA7_0965 2-oxo-hept-3-ene-1,7-dioate hydratase; PFAM: Fumarylacetoacetase, C-terminal-like; PRIAM: 2-oxopent-4-enoate hydratase; SPTR: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetate (FAA) hydrolase family; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YP_004171198.1 COGs: COG3836 2 4-dihydroxyhept-2-ene-1 7-dioic acid aldolase; InterPro IPR005000: IPR012689; KEGG: dra:DR_A0291 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: Aldehyde-lyase domain; PRIAM: 4-hydroxy-2-oxovalerate aldolase; SPTR: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase/citrate lyase family; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YP_004171199.1 COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR002627: IPR018022; KEGG: dge:Dgeo_0860 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA) YP_004171200.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: dge:Dgeo_0859 heat shock protein HSP20; PFAM: Heat shock protein Hsp20; SPTR: Heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family YP_004171201.1 InterPro IPR011701; KEGG: dge:Dgeo_1065 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily YP_004171202.1 COGs: COG2021 homoserine acetyltransferase; InterPro IPR000073: IPR008220; KEGG: ddr:Deide_16030 homoserine O-acetyltransferase (homoserine O-trans-acetylase)(homoserine transacetylase)(HTA); PFAM: Alpha/beta hydrolase fold-1; PRIAM: homoserine O-acetyltransferase; SPTR: homoserine O-acetyltransferase (homoserine O-trans-acetylase)(homoserine transacetylase)(HTA); TIGRFAM: homoserine acetyltransferase; PFAM: alpha/beta hydrolase fold; TIGRFAM: homoserine O-acetyltransferase YP_004171203.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011704; KEGG: dge:Dgeo_0872 ATPase; PFAM: ATPase, AAA-5; SPTR: ATPase associated with various cellular activities, AAA_3; PFAM: AAA domain (dynein-related subfamily) YP_004171204.1 COGs: COG3864 conserved hypothetical protein; InterPro IPR018698; KEGG: dge:Dgeo_0871 hypothetical protein; PFAM: Protein of unknown function DUF2201, metallopeptidase-related; SPTR: Zn-dependent hydrolase containing vWA domain; PFAM: Predicted metallopeptidase (DUF2201) YP_004171205.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843: IPR001761; KEGG: ddr:Deide_00590 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family YP_004171206.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: dge:Dgeo_2859 extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein YP_004171207.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: ddr:Deide_00570 sugar ABC transporter, permease component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: sugar ABC transporter, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004171208.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: ddr:Deide_00560 sugar ABC transporter, permease component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: sugar ABC transporter, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004171209.1 COGs: COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; InterPro IPR001360: IPR017736; KEGG: dge:Dgeo_2862 beta-glucosidase; PFAM: Glycoside hydrolase, family 1; PRIAM: Beta-glucosidase; SPTR: Beta-glucosidase; TIGRFAM: Glycoside hydrolase, family 1, beta-glucosidase; PFAM: Glycosyl hydrolase family 1; TIGRFAM: beta-galactosidase YP_004171210.1 COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR000757: IPR003305; KEGG: eat:EAT1b_1784 glycoside hydrolase family 16; PFAM: Glycoside hydrolase, family 16; Carbohydrate-binding, CenC-like; PRIAM: Glucan endo-1,3-beta-D-glucosidase; SPTR: Glycoside hydrolase family 16; PFAM: Glycosyl hydrolases family 16; Carbohydrate binding domain YP_004171211.1 InterPro IPR004830; KEGG: dra:DR_1773 hypothetical protein; SPTR: uncharacterized protein; PFAM: Leucine rich repeat variant YP_004171212.1 InterPro IPR004830; KEGG: dge:Dgeo_0869 leucine-rich repeat-containing protein; SPTR: Leucine rich repeat variant; PFAM: Leucine rich repeat variant YP_004171213.1 InterPro IPR001279; KEGG: cwo:Cwoe_2612 beta-lactamase domain protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily YP_004171214.1 COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); HAMAP: AICARFT/IMPCHase bienzyme; InterPro IPR011607: IPR013982: IPR002695; KEGG: dge:Dgeo_0513 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain; PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain; SPTR: Bifunctional purine biosynthesis protein purH; TIGRFAM: AICARFT/IMPCHase bienzyme; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_004171215.1 COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; InterPro IPR020630: IPR020631: IPR000672; KEGG: dge:Dgeo_0514 tetrahydrofolate dehydrogenase/cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: Methylenetetrahydrofolate dehydrogenase (NADP(+)); SPTR: Bifunctional protein folD 1; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004171216.1 COGs: COG1126 ABC-type polar amino acid transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: dra:DR_1648 amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter YP_004171217.1 COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR000515: IPR010065; KEGG: cyn:Cyan7425_4662 polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family YP_004171218.1 COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR000515: IPR010065; KEGG: dde:Dde_2765 amino acid ABC transporter permease; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; TIGRFAM: Amino acid ABC transporter, permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family YP_004171219.1 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638: IPR001320; KEGG: drt:Dret_2153 extracellular solute-binding protein family 3; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor; SPTR: Extracellular solute-binding protein family 3; PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_004171220.1 COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR000515: IPR010065; KEGG: dge:Dgeo_1061 amino acid ABC transporter permease; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Amino acid ABC transporter, permease, His/Glu/Gln/Arg/opine; TIGRFAM: Amino acid ABC transporter, permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family YP_004171221.1 COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: dge:Dgeo_1060 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; SPTR: Amino acid ABC transporter, periplasmic protein, His/Glu/Gln/Arg/opine; PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_004171222.1 COGs: COG3839 ABC-type sugar transport systems ATPase components; InterPro IPR003439: IPR013611: IPR003593; KEGG: ddr:Deide_07670 ABC transporter, ATP-binding component; PFAM: ABC transporter-like; Transport-associated OB, type 2; PRIAM: Glycerol-3-phosphate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding component; PFAM: ABC transporter; TOBE domain YP_004171223.1 COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); HAMAP: SecA protein; InterPro IPR011115: IPR011130: IPR011116: IPR000185; KEGG: dge:Dgeo_1058 preprotein translocase subunit SecA; PFAM: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; SecA Wing/Scaffold; SMART: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; SPTR: Protein translocase subunit secA; TIGRFAM: SecA protein; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit YP_004171224.1 COGs: COG0533 Metal-dependent protease with possible chaperone activity; HAMAP: Peptidase M22, O-sialoglycoprotein peptidase; InterPro IPR000905: IPR022450: IPR017861; KEGG: ddr:Deide_17200 DNA-binding/iron metalloprotein/AP endonuclease; PFAM: Peptidase M22, glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: Probable O-sialoglycoprotein endopeptidase; TIGRFAM: Peptidase M22, O-sialoglycoprotein peptidase; Peptidase M22, glycoprotease, subgroup; PFAM: Glycoprotease family; TIGRFAM: glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family YP_004171225.1 InterPro IPR000468; KEGG: sco:SCO1462 hypothetical protein; PFAM: Barstar (barnase inhibitor); SPTR: uncharacterized protein SCO1462; PFAM: Barstar (barnase inhibitor) YP_004171226.1 COGs: COG4290 Guanyl-specific ribonuclease Sa; InterPro IPR000026; KEGG: dge:Dgeo_1055 guanine-specific ribonuclease N1 and T1; PFAM: Guanine-specific ribonuclease N1/T1; SPTR: Guanine-specific ribonuclease N1 and T1; PFAM: ribonuclease YP_004171227.1 KEGG: tbi:Tbis_2121 molybdopterin oxidoreductase; SPTR: Molybdopterin oxidoreductase YP_004171228.1 COGs: COG1968 Uncharacterized bacitracin resistance protein; HAMAP: Bacitracin resistance protein BacA; InterPro IPR003824; KEGG: dge:Dgeo_1051 undecaprenol kinase, PFAM: Bacitracin resistance protein BacA; SPTR: undecaprenyl-diphosphatase; TIGRFAM: Bacitracin resistance protein BacA; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP YP_004171229.1 KEGG: ddr:Deide_15980 hypothetical protein; SPTR: uncharacterized protein YP_004171230.1 COGs: COG1299 Phosphotransferase system fructose-specific IIC component; InterPro IPR003352: IPR003353: IPR006327; KEGG: dge:Dgeo_2175 phosphotransferase system, fructose IIC component; PFAM: Phosphotransferase system, EIIC; SPTR: Phosphotransferase system, fructose IIC component; TIGRFAM: Phosphotransferase system, fructose IIC component; Phosphotransferase system, fructose-specific IIB subunit; PFAM: Phosphotransferase system, EIIC; PTS system, Lactose/Cellobiose specific IIB subunit; TIGRFAM: PTS system, fructose-specific, IIB component; PTS system, fructose subfamily, IIC component YP_004171231.1 COGs: COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); InterPro IPR011611: IPR017583: IPR022463; KEGG: dge:Dgeo_2174 1-phosphofructokinase; PFAM: Carbohydrate/purine kinase; PRIAM: 1-phosphofructokinase; SPTR: 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; Tagatose/fructose phosphokinase; PFAM: pfkB family carbohydrate kinase; TIGRFAM: 1-phosphofructokinase; hexose kinase, 1-phosphofructokinase family YP_004171232.1 COGs: COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component); InterProIPR002178: IPR005698: IPR008731: IPR008279: IPR 000121: IPR006318; KEGG: ddr:Deide_20750 phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; Phosphotransferase system, phosphocarrier HPr protein; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile domain; PRIAM: Phosphoenolpyruvate--protein phosphotransferase; SPTR: phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; Phosphotransferase system, phosphocarrier HPr protein; PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; PTS HPr component phosphorylation site; PEP-utilising enzyme, N-terminal; Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; TIGRFAM: Phosphotransferase System HPr (HPr) Family; phosphoenolpyruvate-protein phosphotransferase YP_004171233.1 COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034: IPR014036; KEGG: dge:Dgeo_2172 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: Transcriptional regulator, DeoR family; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain YP_004171234.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR013656: IPR003594: IPR000014; KEGG: ddr:Deide_1p00460 histidine kinase-like ATPase; PFAM: ATPase-like, ATP-binding domain; PAS fold-4; SMART: ATPase-like, ATP-binding domain; PAS; SPTR: histidine kinase-like ATPase; TIGRFAM: PAS; manually curated; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box YP_004171235.1 COGs: COG2076 Membrane transporter of cations and cationic drugs; InterPro IPR000390; KEGG: dge:Dgeo_2170 small multidrug resistance protein; PFAM: Small multidrug resistance protein; SPTR: SugE family protein; PFAM: Small Multidrug Resistance protein YP_004171236.1 COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: ddr:Deide_12100 DNA helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: UvrD/REP helicase; PFAM: UvrD/REP helicase YP_004171237.1 InterPro IPR006311; KEGG: ddr:Deide_07540 desiccation-associated protein, precursor; SPTR: Desiccation-associated protein YP_004171238.1 COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: dra:DR_2201 hypothetical protein; PFAM: Transcription regulator Rrf2; SPTR: uncharacterized protein; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein ( transcriptional regulator) YP_004171239.1 COGs: COG2124 Cytochrome P450; InterPro IPR001128; KEGG: hau:Haur_2271 cytochrome P450; PFAM: Cytochrome P450; PRIAM: Peroxidase; SPTR: Cytochrome P450; PFAM: Cytochrome P450 YP_004171240.1 KEGG: ddr:Deide_13890 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004171241.1 COGs: COG0155 Sulfite reductase beta subunit (hemoprotein); InterPro IPR005117: IPR006067; KEGG: dge:Dgeo_1407 ferredoxin--nitrite reductase; PFAM: Nitrite/sulphite reductase 4Fe-4S domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; PRIAM: Sulfite reductase (ferredoxin); SPTR: Ferredoxin--sulfite reductase; PFAM: Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain YP_004171242.1 COGs: COG0529 Adenylylsulfate kinase and related kinase; HAMAP: Adenylylsulphate kinase, C-terminal; InterPro IPR002891; KEGG: dra:DR_A0014 adenylylsulfate kinase; PFAM: Adenylylsulphate kinase, C-terminal; PRIAM: Adenylyl-sulfate kinase; SPTR: Adenylyl-sulfate kinase; TIGRFAM: Adenylylsulphate kinase, C-terminal; PFAM: Adenylylsulphate kinase; TIGRFAM: adenylylsulfate kinase (apsK) YP_004171243.1 COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR002500; KEGG: dge:Dgeo_1409 phosphoadenosine phosphosulfate reductase; PFAM: Phosphoadenosine phosphosulphate reductase; PRIAM: Phosphoadenylyl-sulfate reductase (thioredoxin); SPTR: Phosphoadenosine phosphosulfate reductase; PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: phosophoadenylyl-sulfate reductase (thioredoxin) YP_004171244.1 COGs: COG2046 ATP sulfurylase (sulfate adenylyltransferase); HAMAP: Sulphate adenylyltransferase, subgroup; InterPro IPR002650: IPR020792; KEGG: dge:Dgeo_1410 sulfate adenylyltransferase; PFAM: Sulphate adenylyltransferase; PRIAM: Sulfate adenylyltransferase; SPTR: Sulfate adenylyltransferase; TIGRFAM: Sulphate adenylyltransferase; PFAM: ATP-sulfurylase; TIGRFAM: ATP sulphurylase YP_004171245.1 COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; InterPro IPR015168: IPR010067: IPR001638; KEGG: dge:Dgeo_1411 ABC transporter, substrate-binding protein, aliphatic sulphonates; SMART: Extracellular solute-binding protein, family 3; SPTR: ABC transporter, substrate-binding protein, aliphatic sulphonate; TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulphonates; PFAM: NMT1/THI5 like; TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulfonates family YP_004171246.1 COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; InterPro IPR000515; KEGG: dge:Dgeo_1412 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter, permease, aliphatic sulphonate; PFAM: Binding-protein-dependent transport system inner membrane component YP_004171247.1 COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: dge:Dgeo_1413 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Taurine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATPase, aliphatic sulphonate; PFAM: ABC transporter YP_004171248.1 COGs: COG2357 conserved hypothetical protein; InterPro IPR007685; KEGG: dge:Dgeo_1428 RelA/SpoT; PFAM: RelA/SpoT; SMART: RelA/SpoT; SPTR: RelA/SpoT domain protein; PFAM: Region found in RelA / SpoT proteins YP_004171249.1 COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterProIPR003726: IPR000489: IPR003759: IPR006158: IPR 004223: IPR011822; KEGG: dge:Dgeo_1336 B12-dependent methionine synthase; PFAM: homocysteine S-methyltransferase; Pterin-binding; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Vitamin B12-dependent methionine synthase, activation domain; PRIAM: Methionine synthase; SPTR: 5-methyltetrahydrofolate--homocysteine methyltransferase; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; PFAM: Pterin binding enzyme; Vitamin B12 dependent methionine synthase, activation domain; B12 binding domain; homocysteine S-methyltransferase; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain; 5-methyltetrahydrofolate--homocysteine methyltransferase YP_004171250.1 COGs: COG0685 5 10-methylenetetrahydrofolate reductase; KEGG: dge:Dgeo_1337 5,10-methylenetetrahydrofolate reductase-related protein; SPTR: Methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase YP_004171251.1 KEGG: cth:Cthe_3059 phosphotransferase KptA/Tpt1; SPTR: Probable RNA 2'-phosphotransferase YP_004171252.1 COGs: COG0018 Arginyl-tRNA synthetase; HAMAP: Arginyl-tRNA synthetase, class Ic; InterPro IPR005148: IPR015945: IPR008909: IPR001278; KEGG: dge:Dgeo_1036 arginyl-tRNA synthetase; PFAM: DALR anticodon binding; Arginyl tRNA synthetase, class Ic, N-terminal; Arginyl-tRNA synthetase, class Ic, core; PRIAM: Arginine--tRNA ligase; SMART: DALR anticodon binding; SPTR: Arginyl-tRNA synthetase; TIGRFAM: Arginyl-tRNA synthetase, class Ic; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase YP_004171253.1 KEGG: dge:Dgeo_1373 hypothetical protein; SPTR: uncharacterized protein YP_004171254.1 COGs: COG1963 conserved hypothetical protein; InterPro IPR003832; KEGG: ddr:Deide_12260 hypothetical protein; PFAM: Acid phosphatase/vanadium-dependent haloperoxidase-related; SPTR: uncharacterized protein; PFAM: Divergent PAP2 family YP_004171255.1 COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; InterPro IPR020630: IPR020631: IPR000672; KEGG: dge:Dgeo_0699 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: Methylenetetrahydrofolate dehydrogenase (NADP(+)); SPTR: Bifunctional protein folD 2; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004171256.1 COGs: COG0781 Transcription termination factor; HAMAP: NusB antitermination factor; InterPro IPR006027: IPR011605; KEGG: dge:Dgeo_0698 NusB antitermination factor; PFAM: NusB/RsmB/TIM44; SPTR: N utilization substance protein B homolog; TIGRFAM: NusB antitermination factor; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB YP_004171257.1 COGs: COG1302 conserved hypothetical protein; InterPro IPR005531; KEGG: dge:Dgeo_0697 hypothetical protein; PFAM: Alkaline shock protein Asp23; SPTR: Alkaline shock protein, DUF322; PFAM: Protein of unknown function (DUF322) YP_004171258.1 KEGG: swi:Swit_0502 regulatory protein, LuxR; SPTR: Regulatory protein, LuxR YP_004171259.1 KEGG: kra:Krad_0103 hypothetical protein; SPTR: uncharacterized protein YP_004171260.1 COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); HAMAP: NAD-dependent DNA ligase; InterProIPR013839: IPR004150: IPR004149: IPR000445: IPR 001357: IPR001679: IPR013840: IPR003583; KEGG: dge:Dgeo_0696 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; Helix-hairpin-helix motif; BRCT; PRIAM: DNA ligase (NAD(+)); SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT; SPTR: DNA ligase; TIGRFAM: NAD-dependent DNA ligase; PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; NAD-dependent DNA ligase C4 zinc finger domain; BRCA1 C Terminus (BRCT) domain; TIGRFAM: DNA ligase, NAD-dependent YP_004171261.1 COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein; InterPro IPR003760; KEGG: dge:Dgeo_0695 basic membrane lipoprotein; PFAM: Basic membrane lipoprotein; SPTR: Basic membrane lipoprotein, Med/BMP family; PFAM: Basic membrane protein YP_004171262.1 COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027; KEGG: svi:Svir_08440 NADH dehydrogenase, FAD-containing subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: NADH dehydrogenase, FAD-containing subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004171263.1 COGs: COG5322 dehydrogenase; InterPro IPR000534; KEGG: dfe:Dfer_5680 hypothetical protein; PFAM: Semialdehyde dehydrogenase, NAD-binding; SPTR: uncharacterized protein; PFAM: short chain dehydrogenase YP_004171264.1 InterPro IPR000326; KEGG: ddr:Deide_08540 hypothetical protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: uncharacterized protein; PFAM: PAP2 superfamily YP_004171265.1 COGs: COG3845 ABC-type uncharacterized transport systems ATPase components; InterPro IPR003439: IPR003593; KEGG: dge:Dgeo_1374 ABC transporter related; PFAM: ABC transporter-like; PRIAM: monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type uncharacterized transport system, ATPase component; PFAM: ABC transporter YP_004171266.1 COGs: COG0813 Purine-nucleoside phosphorylase; HAMAP: Purine nucleoside phosphorylase; InterPro IPR000845: IPR004402; KEGG: dra:DR_2166 purine nucleoside phosphorylase; PFAM: Nucleoside phosphorylase domain; PRIAM: Purine-nucleoside phosphorylase; SPTR: Purine nucleoside phosphorylase; TIGRFAM: Purine nucleoside phosphorylase; PFAM: Phosphorylase superfamily; TIGRFAM: purine-nucleoside phosphorylase, family 1 (deoD) YP_004171267.1 COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR006027: IPR001678; KEGG: dge:Dgeo_1498 NusB/RsmB/TIM44; PFAM: NusB/RsmB/TIM44; Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; SPTR: rRNA methyltransferase, sun family protein; PFAM: NOL1/NOP2/sun family; NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB YP_004171268.1 COGs: COG2359 conserved hypothetical protein; InterPro IPR007347; KEGG: msv:Mesil_1701 stage V sporulation protein S; PFAM: Stage V sporulation protein S; SPTR: Stage V sporulation protein S; PFAM: Stage V sporulation protein S (SpoVS) YP_004171269.1 COGs: COG0069 Glutamate synthase domain 2; InterPro IPR000583: IPR002932: IPR002489; KEGG: mrb:Mrub_1802 glutamate synthase (ferredoxin); PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, alpha subunit, C-terminal; PRIAM: Glutamate synthase (ferredoxin); SPTR: Glutamate synthase (Ferredoxin); PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II YP_004171270.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dra:DR_2595 oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Oxidoreductase, short-chain dehydrogenase/reductase family; PFAM: short chain dehydrogenase YP_004171271.1 COGs: COG3603 conserved hypothetical protein; KEGG: dra:DR_1715 hypothetical protein; SPTR: uncharacterized protein YP_004171272.1 KEGG: psa:PST_0666 hypothetical protein; SPTR: uncharacterized protein YP_004171273.1 COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099: IPR002912; KEGG: ddr:Deide_10960 prephenate dehydrogenase (chorismate mutase--prephenate dehydrogenase); PFAM: Prephenate dehydrogenase; Amino acid-binding ACT; PRIAM: Prephenate dehydrogenase; SPTR: prephenate dehydrogenase (Chorismate mutase--prephenate dehydrogenase); PFAM: Prephenate dehydrogenase YP_004171274.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: ddr:Deide_00350 non-heme chloroperoxidase, (chloride peroxidase); PFAM: Alpha/beta hydrolase fold-1; PRIAM: Chloride peroxidase; SPTR: non-heme chloroperoxidase, (Chloride peroxidase); PFAM: alpha/beta hydrolase fold YP_004171275.1 COGs: COG0782 Transcription elongation factor; InterPro IPR022691: IPR001437; KEGG: dge:Dgeo_1813 GreA/GreB family elongation factor; PFAM: Transcription elongation factor, GreA/GreB, N-terminal; Transcription elongation factor, GreA/GreB, C-terminal; SPTR: GreA/GreB family elongation factor; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term YP_004171276.1 COGs: COG0492 Thioredoxin reductase; InterPro IPR013027; KEGG: dge:Dgeo_0975 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Thioredoxin reductase, AHPF; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004171277.1 COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834: IPR006402: IPR006439; KEGG: ddr:Deide_09100 haloacid dehalogenase-like hydrolase (HAD superfamily hydrolase); PFAM: haloacid dehalogenase-like hydrolase; SPTR: haloacid dehalogenase-like hydrolase (HAD superfamily hydrolase); TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_004171278.1 COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: npu:Npun_R0421 glucose/sorbosone dehydrogenase-like protein; SPTR: Glucose/sorbosone dehydrogenase-like protein YP_004171279.1 COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198: IPR020842; KEGG: ddr:Deide_09080 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR; SPTR: Oxidoreductase, short-chain dehydrogenase/reductase family; PFAM: short chain dehydrogenase YP_004171280.1 COGs: COG0221 Inorganic pyrophosphatase; KEGG: dge:Dgeo_0973 inorganic pyrophosphatase-related protein; SPTR: Inorganic pyrophosphatase-related protein; PFAM: Inorganic pyrophosphatase YP_004171281.1 InterPro IPR004360; KEGG: dge:Dgeo_2856 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: uncharacterized protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_004171282.1 COGs: COG2252 Permease; InterPro IPR006043; KEGG: dge:Dgeo_2607 xanthine/uracil/vitamin C permease; PFAM: Xanthine/uracil/vitamin C permease; SPTR: Xanthine/uracil/vitamin C permease; PFAM: Permease family YP_004171283.1 COGs: COG2374 extracellular nuclease; InterPro IPR005135: IPR000601; KEGG: dra:DR_B0067 extracellular nuclease, PFAM: Endonuclease/exonuclease/phosphatase; PKD domain; SPTR: Extracellular nuclease, ; PFAM: Endonuclease/Exonuclease/phosphatase family YP_004171284.1 KEGG: cim:CIMG_04976 hypothetical protein YP_004171285.1 KEGG: dra:DR_B0071 hypothetical protein; SPTR: uncharacterized protein YP_004171286.1 KEGG: dra:DR_B0070 hypothetical protein; SPTR: uncharacterized protein YP_004171287.1 InterPro IPR003018; KEGG: dge:Dgeo_2479 diguanylate cyclase with GAF sensor; PFAM: GAF; SMART: GAF; SPTR: Diguanylate cyclase with GAF sensor; PFAM: GAF domain YP_004171288.1 COGs: COG1819 Glycosyl transferase related to UDP-glucuronosyltransferase; InterPro IPR002213: IPR006326; KEGG: sco:SCO0040 glycosyl transferase; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; SPTR: Glycosyl transferase; TIGRFAM: UDP-glycosyltransferase, MGT; PFAM: UDP-glucoronosyl and UDP-glucosyl transferase; TIGRFAM: glycosyltransferase, MGT family YP_004171289.1 KEGG: dra:DR_B0066 hypothetical protein; SPTR: uncharacterized protein YP_004171290.1 KEGG: dra:DR_0569 hypothetical protein; SPTR: uncharacterized protein YP_004171291.1 KEGG: vap:Vapar_2209 hypothetical protein; SPTR: uncharacterized protein YP_004171292.1 COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; InterPro IPR005814; KEGG: ddr:Deide_09040 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: 4-aminobutyrate aminotransferase, aminotransferase class-III; PFAM: Aminotransferase class-III; TIGRFAM: 4-aminobutyrate aminotransferase, prokaryotic type YP_004171293.1 COGs: COG1509 Lysine 2 3-aminomutase; InterPro IPR007197: IPR003739: IPR022459; KEGG: dge:Dgeo_0988 hypothetical protein; PFAM: Radical SAM; PRIAM: Lysine 2,3-aminomutase; SPTR: Lysine 2,3-aminomutase; TIGRFAM: Lysine-2,3-aminomutase; Conserved hyprothetical protein CHP00238, KamA; PFAM: Lysine-2,3-aminomutase; Radical SAM superfamily; TIGRFAM: KamA family protein; lysine-2,3-aminomutase YP_004171294.1 COGs: COG1522 Transcriptional regulators; InterPro IPR019887: IPR019888; KEGG: dge:Dgeo_0987 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type; SPTR: Transcriptional regulator, AsnC family; PFAM: MarR family; AsnC family YP_004171295.1 COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR000801; KEGG: ddr:Deide_20230 esterase; PFAM: esterase; SPTR: esterase; PFAM: esterase YP_004171296.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: ddr:Deide_13670 1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase domain; PRIAM: 1-pyrroline-5-carboxylate dehydrogenase; SPTR: 1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase, group 2 YP_004171297.1 KEGG: dge:Dgeo_1175 hypothetical protein; SPTR: Yfit/DinB family predicted metal-dependent hydrolase; PFAM: Protein of unknown function (DUF664) YP_004171298.1 COGs: COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; InterPro IPR005814; KEGG: dge:Dgeo_1177 aminotransferase class-III; PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Aminotransferase class-III; PFAM: Aminotransferase class-III YP_004171299.1 COGs: COG1922 Teichoic acid biosynthesis protein; InterPro IPR004629; KEGG: dge:Dgeo_1066 WecB/TagA/CpsF family glycosyl transferase; PFAM: Glycosyl transferase WecB/TagA/CpsF; PRIAM: N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase; SPTR: Glycosyl transferase, WecB/TagA/CpsF family; TIGRFAM: Glycosyl transferase WecB/TagA/CpsF; PFAM: Glycosyl transferase WecB/TagA/CpsF family; TIGRFAM: bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family YP_004171300.1 COGs: COG2045 Phosphosulfolactate phosphohydrolase; InterPro IPR005238; KEGG: tra:Trad_1379 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulpholactate phosphatase; SPTR: 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulpholactate phosphatase YP_004171301.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR001808; KEGG: dge:Dgeo_1275 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain; SPTR: Transcriptional regulator, Crp/Fnr family; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain YP_004171302.1 COGs: COG4365 conserved hypothetical protein; HAMAP: Uncharacterised protein family UPF0747; InterPro IPR011199; KEGG: dge:Dgeo_1276 hypothetical protein; PFAM: Uncharacterised protein family UPF0747; SPTR: UPF0747 protein Dgeo_1276; PFAM: Uncharacterized protein conserved in bacteria (DUF2317) YP_004171303.1 COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807; KEGG: dge:Dgeo_0659 TrkA-C; PFAM: Chloride channel, voltage gated; SPTR: Chloride channel protein, EriC; PFAM: Voltage gated chloride channel YP_004171304.1 COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: dra:DR_2565 iron-sulfur binding reductase, PFAM: Cysteine-rich domain; SPTR: Iron-sulfur binding reductase, ; PFAM: Cysteine-rich domain YP_004171305.1 COGs: COG1254 Acylphosphatase; HAMAP: Acylphosphatase; InterPro IPR001792; KEGG: dra:DR_0929 acylphosphatase; PFAM: Acylphosphatase-like; SPTR: Acylphosphatase; PFAM: Acylphosphatase YP_004171306.1 COGs: COG2911 conserved hypothetical protein; InterPro IPR008619: IPR007452; KEGG: dge:Dgeo_0508 hypothetical protein; PFAM: Protein of unknown function DUF490; Filamentous haemagglutinin, bacterial; SPTR: uncharacterized protein; PFAM: Family of unknown function (DUF490) YP_004171307.1 KEGG: ddr:Deide_16110 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004171308.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439: IPR003593; KEGG: dge:Dgeo_0506 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ATPase component of ABC transporter, containing duplicated ATPase domains; PFAM: ABC transporter YP_004171309.1 COGs: COG0045 Succinyl-CoA synthetase beta subunit; HAMAP: Succinyl-CoA synthetase, beta subunit; InterPro IPR013650: IPR005811: IPR005809; KEGG: dge:Dgeo_1088 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: Succinyl-CoA ligase [ADP-forming] subunit beta; TIGRFAM: Succinyl-CoA synthetase, beta subunit; PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit YP_004171310.1 COGs: COG0074 Succinyl-CoA synthetase alpha subunit; InterPro IPR003781: IPR005811: IPR005810; KEGG: dge:Dgeo_1089 succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SMART: CoA-binding; SPTR: Succinyl-CoA ligase [ADP-forming] subunit alpha; TIGRFAM: Succinyl-CoA ligase, alpha subunit; PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, alpha subunit YP_004171311.1 KEGG: dge:Dgeo_1098 hypothetical protein; SPTR: uncharacterized protein YP_004171312.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dge:Dgeo_1099 glycosyl transferase, group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1 YP_004171313.1 InterPro IPR013096; KEGG: req:REQ_26250 hypothetical protein; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2 conserved barrel domain protein; PFAM: Cupin domain YP_004171314.1 InterPro IPR000835; KEGG: scl:sce8843 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; PFAM: MarR family YP_004171315.1 COGs: COG1307 conserved hypothetical protein; InterPro IPR003797; KEGG: dge:Dgeo_1100 DegV family protein; PFAM: DegV; SPTR: DegV family protein; TIGRFAM: DegV; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family YP_004171316.1 KEGG: dge:Dgeo_1431 hypothetical protein; SPTR: uncharacterized protein YP_004171317.1 HAMAP: ribosomal protein S20; InterPro IPR002583; KEGG: dge:Dgeo_1432 30S ribosomal protein S20; PFAM: ribosomal protein S20; SPTR: 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; TIGRFAM: ribosomal protein S20 YP_004171318.1 COGs: COG2137 conserved hypothetical protein; HAMAP: Regulatory protein RecX; InterPro IPR003783; KEGG: dra:DR_1310 recombination regulator RecX; PFAM: Regulatory protein RecX; SPTR: Regulatory protein recX; PFAM: RecX family YP_004171319.1 COGs: COG1768 phosphohydrolase; InterPro IPR004843; KEGG: ddr:Deide_12340 phosphohydrolase, metallophosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: phosphohydrolase, metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_004171320.1 COGs: COG0077 Prephenate dehydratase; InterPro IPR001086; KEGG: ddr:Deide_11150 prephenate dehydratase; PFAM: Prephenate dehydratase; PRIAM: Prephenate dehydratase; SPTR: prephenate dehydratase; PFAM: Prephenate dehydratase YP_004171321.1 COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR000120; KEGG: dge:Dgeo_1333 amidase; PFAM: Amidase; PRIAM: Amidase; SPTR: Amidase; PFAM: Amidase YP_004171322.1 COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterProIPR013656: IPR006674: IPR000014: IPR001610: IPR 003607; KEGG: tra:Trad_1982 diguanylate cyclase and metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; PAS fold-4; SMART: PAS; PAC motif; Metal-dependent phosphohydrolase, HD domain; SPTR: Diguanylate cyclase and metal dependent phosphohydrolase; TIGRFAM: PAS; PFAM: HD domain; PAS fold; TIGRFAM: PAS domain S-box YP_004171323.1 InterPro IPR002921; KEGG: mar:MAE_01000 hypothetical protein; PFAM: lipase, class 3; SPTR: lipase family; PFAM: lipase (class 3) YP_004171324.1 KEGG: fsu:Fisuc_2212 hypothetical protein; SPTR: uncharacterized protein YP_004171325.1 KEGG: fba:FIC_01925 protein of unknown function DUF892; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF892) YP_004171326.1 COGs: COG2859 conserved hypothetical protein; InterPro IPR007497; KEGG: syn:slr1258 hypothetical protein; PFAM: Protein of unknown function DUF541; SPTR: Slr1258 protein; PFAM: Protein of unknown function (DUF541) YP_004171327.1 COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: dra:DR_2094 rrf2 protein; PFAM: Transcription regulator Rrf2; SPTR: Rrf2 protein; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein ( transcriptional regulator) YP_004171328.1 COGs: COG0167 Dihydroorotate dehydrogenase; HAMAP: Dihydroorotate dehydrogenase, class 2; InterPro IPR012135: IPR005719; KEGG: dra:DR_0501 dihydroorotate dehydrogenase 2; PFAM: Dihydroorotate dehydrogenase, class 1/ 2; PRIAM: Dihydroorotate oxidase; SPTR: Dihydroorotate dehydrogenase; TIGRFAM: Dihydroorotate dehydrogenase, class 2; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase, subfamily 2 YP_004171329.1 KEGG: dge:Dgeo_1591 hypothetical protein; SPTR: uncharacterized protein YP_004171330.1 COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680: IPR004722; KEGG: ddr:Deide_18120 dihydroorotase; PFAM: Amidohydrolase 1; SPTR: Dihydroorotase; TIGRFAM: Dihydroorotase; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type YP_004171331.1 COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; HAMAP: Aspartate carbamoyltransferase, eukaryotic; InterPro IPR006132: IPR006131: IPR002082; KEGG: dra:DR_1109 aspartate carbamoyltransferase catalytic subunit; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; PRIAM: Aspartate carbamoyltransferase; SPTR: Aspartate carbamoyltransferase; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase YP_004171332.1 COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; HAMAP: Bifunctional protein PyrR; InterPro IPR000836: IPR023050; KEGG: ddr:Deide_18100 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: uracil phosphoribosyltransferase; SPTR: Bifunctional protein pyrR; PFAM: Phosphoribosyl transferase domain YP_004171333.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: dge:Dgeo_0505 heat shock protein HSP20; PFAM: Heat shock protein Hsp20; SPTR: Heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family YP_004171334.1 KEGG: dra:DR_0734 hypothetical protein; SPTR: uncharacterized protein YP_004171335.1 COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: dra:DR_1685 ParA family chromosome partitioning ATPase; SPTR: Chromosome partitioning protein, ParA family; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004171336.1 COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: dge:Dgeo_1021 LmbE-like protein protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: LmbE-like protein protein; PFAM: GlcNAc-PI de-N-acetylase YP_004171337.1 KEGG: ddr:Deide_08531 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004171338.1 COGs: COG1056 Nicotinamide mononucleotide adenylyltransferase; InterPro IPR004820: IPR004821; KEGG: ddr:Deide_20050 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; PFAM: Cytidylyltransferase; SPTR: N-terminal TagD like nucleotidyl transferase domain-containing C-terminal MutT like hydrolase domain; TIGRFAM: Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: cytidyltransferase-related domain YP_004171339.1 InterPro IPR005821; KEGG: tra:Trad_0565 ion transport protein; PFAM: Ion transport; SPTR: Ion transport protein; PFAM: Ion transport protein YP_004171340.1 COGs: COG0171 NAD synthase; HAMAP: NH(3)-dependent NAD(+) synthetase; InterPro IPR022310: IPR003694: IPR022926; KEGG: ddr:Deide_15170 NAD synthetase; PFAM: NAD/GMP synthase; SPTR: NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD synthase; PFAM: NAD synthase; TIGRFAM: NAD+ synthetase YP_004171341.1 COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR015977: IPR006405; KEGG: ddr:Deide_08070 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; PRIAM: Nicotinate phosphoribosyltransferase; SPTR: Nicotinate phosphoribosyltransferase; TIGRFAM: Nicotinate phosphoribosyltransferase PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family; TIGRFAM: nicotinate phosphoribosyltransferase YP_004171342.1 COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: dge:Dgeo_1329 histidine triad (HIT) protein; PFAM: histidine triad (HIT) protein; SPTR: histidine triad (HIT) protein; PFAM: HIT domain YP_004171343.1 KEGG: dge:Dgeo_1323 dessication-associated protein; SPTR: Dessication-associated protein YP_004171344.1 COGs: COG1703 periplasmic protein kinase ArgK and related GTPase of G3E family; InterPro IPR005129: IPR003593; KEGG: dge:Dgeo_1322 arginine/ornithine transport system ATPase; PFAM: ArgK protein; SMART: ATPase, AAA+ type, core; SPTR: LAO/AO transport system ATPase; TIGRFAM: ArgK protein; PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase YP_004171345.1 KEGG: dge:Dgeo_1321 hypothetical protein; SPTR: uncharacterized protein YP_004171346.1 COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006099: IPR006158: IPR006098: IPR006159; KEGG: dge:Dgeo_1320 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase, beta subunit; TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; PFAM: Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase, heterodimeric type, beta chain; methylmalonyl-CoA mutase C-terminal domain YP_004171347.1 COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873; KEGG: dge:Dgeo_2396 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Butyrate--CoA ligase; SPTR: AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme YP_004171348.1 COGs: COG5316 conserved hypothetical protein; KEGG: dge:Dgeo_1339 hypothetical protein; SPTR: uncharacterized protein YP_004171349.1 COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003439: IPR013563: IPR010066: IPR003593; KEGG: dge:Dgeo_1340 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; PRIAM: Nickel-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type oligopeptide transport system, ATPase component; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_004171350.1 COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR003439: IPR013563: IPR010066: IPR003593; KEGG: dge:Dgeo_1341 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; PRIAM: Nickel-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC ATPase, oligopeptide transporter; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_004171351.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dra:DR_1569 peptide ABC transporter, permease; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Peptide ABC transporter, permease; PFAM: Binding-protein-dependent transport system inner membrane component YP_004171352.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dge:Dgeo_1343 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type oligopeptide transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004171353.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: dge:Dgeo_1344 extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: ABC-type oligopeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_004171354.1 InterPro IPR004692; KEGG: ddr:Deide_11052 preprotein translocase subunit SecG; PFAM: Preprotein translocase SecG subunit; SPTR: Preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit YP_004171355.1 COGs: COG0151 Phosphoribosylamine-glycine ligase; HAMAP: Phosphoribosylglycinamide synthetase; InterPro IPR020562: IPR020561: IPR020560: IPR000115; KEGG: dge:Dgeo_1347 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; PRIAM: Phosphoribosylamine--glycine ligase; SPTR: Phosphoribosylamine--glycine ligase; TIGRFAM: Phosphoribosylglycinamide synthetase; PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase YP_004171356.1 COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR002376: IPR004607; KEGG: msv:Mesil_1531 phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase, N-terminal; PRIAM: Phosphoribosylglycinamide formyltransferase; SPTR: Phosphoribosylglycinamide formyltransferase; TIGRFAM: Phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent YP_004171357.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: ddr:Deide_11040 metallo-beta-lactamase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: metallo-beta-lactamase; PFAM: Metallo-beta-lactamase superfamily YP_004171358.1 KEGG: dge:Dgeo_1349 hypothetical protein; SPTR: uncharacterized protein YP_004171359.1 KEGG: ddr:Deide_11020 hypothetical protein; SPTR: uncharacterized protein YP_004171360.1 KEGG: dra:DR_1882 hypothetical protein; SPTR: uncharacterized protein YP_004171361.1 COGs: COG0850 Septum formation inhibitor; HAMAP: Septum formation inhibitor MinC; InterPro IPR005526: IPR013033; KEGG: dge:Dgeo_0673 septum formation inhibitor MinC; PFAM: Septum formation inhibitor MinC, C-terminal; SPTR: Probable septum site-determining protein minC; PFAM: Septum formation inhibitor MinC, C-terminal domain; TIGRFAM: septum site-determining protein MinC YP_004171362.1 HAMAP: ribosome maturation factor RimP; InterPro IPR003728; KEGG: dge:Dgeo_1233 hypothetical protein; PFAM: ribosome maturation factor RimP; SPTR: ribosome maturation factor rimP; PFAM: Uncharacterised BCR, YhbC family COG0779 YP_004171363.1 COGs: COG0195 Transcription elongation factor; InterPro IPR013735: IPR010213; KEGG: dge:Dgeo_1234 transcription elongation factor NusA; PFAM: Transcription factor NusA, N-terminal; SPTR: NusA antitermination factor; TIGRFAM: Transcription termination factor NusA; PFAM: NusA N-terminal domain; TIGRFAM: transcription termination factor NusA YP_004171364.1 COGs: COG2740 nucleic-acid-binding protein implicated in transcription termination; InterPro IPR007393; KEGG: dge:Dgeo_1235 hypothetical protein; PFAM: Protein of unknown function DUF448; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF448) YP_004171365.1 COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterProIPR006847: IPR000795: IPR004161: IPR000178: IPR 005225; KEGG: dra:DR_1799 translation initiation factor IF-2; PFAM: Protein synthesis factor, GTP-binding; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2; SPTR: Translation initiation factor IF-2; TIGRFAM: Translation initiation factor aIF-2, bacterial-like; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2 YP_004171366.1 KEGG: mxa:MXAN_6633 hypothetical protein; SPTR: membrane protein YP_004171367.1 KEGG: dge:Dgeo_1238 hypothetical protein; SPTR: uncharacterized protein YP_004171368.1 COGs: COG0342 Preprotein translocase subunit SecD; InterProIPR022646: IPR022813: IPR005791: IPR022645: IPR 005665; KEGG: dge:Dgeo_1239 bifunctional preprotein translocase subunit SecD/SecF; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal; SPTR: Protein-export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein, bacteria; SecF protein; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF YP_004171369.1 KEGG: dge:Dgeo_1598 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1049) YP_004171370.1 COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR001667: IPR003156: IPR004610; KEGG: ddr:Deide_07130 single-stranded-DNA-specific exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: single-stranded-DNA-specific exonuclease; TIGRFAM: Bacterial RecJ exonuclease; PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ YP_004171371.1 COGs: COG2124 Cytochrome P450; InterPro IPR001128; KEGG: mau:Micau_4878 cytochrome P450; PFAM: Cytochrome P450; SPTR: Fatty acid alpha hydroxylase, cytochrome P450; PFAM: Cytochrome P450 YP_004171372.1 COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104: IPR006103; KEGG: ddr:Deide_13120 glycoside hydrolase family 2 (glycosyl hydrolase family 2); PFAM: Glycoside hydrolase, family 2, carbohydrate-binding; Glycoside hydrolase, family 2, TIM barrel; SPTR: Glycoside hydrolase family 2 (Glycosyl hydrolase family 2); PFAM: Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain YP_004171373.1 COGs: COG3871 Uncharacterized stress protein (general stress protein 26); InterPro IPR011576; KEGG: fal:FRAAL4828 uncharacterized stress protein; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SPTR: uncharacterized stress protein; PFAM: Pyridoxamine 5'-phosphate oxidase YP_004171374.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439: IPR003593; KEGG: dge:Dgeo_0929 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ATPase component of ABC transporter containing duplicated ATPase domain; PFAM: ABC transporter YP_004171375.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: ddr:Deide_05230 regulator protein, GGDEF domain; membrane protein; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: regulator protein, GGDEF domain; membrane protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004171376.1 KEGG: ddr:Deide_12251 hypothetical protein; SPTR: uncharacterized protein YP_004171377.1 COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR003661: IPR003594; KEGG: dge:Dgeo_0908 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: histidine kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004171378.1 COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: dra:DR_1659 oligopeptidase A; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; PRIAM: Oligopeptidase A; SPTR: Oligopeptidase A; PFAM: Peptidase family M3 YP_004171379.1 COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); HAMAP: Queuosine biosynthesis protein; InterPro IPR003699; KEGG: dge:Dgeo_0946 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: Queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_004171380.1 COGs: COG1432 conserved hypothetical protein; InterPro IPR021139; KEGG: dra:DR_1578 hypothetical protein; PFAM: Domain of unknown function DUF88; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF88 YP_004171381.1 COGs: COG2352 Phosphoenolpyruvate carboxylase; HAMAP: Phosphoenolpyruvate carboxylase, bacterial/plant-type; InterPro IPR021135: IPR022805; KEGG: ddr:Deide_08820 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase; PRIAM: Phosphoenolpyruvate carboxylase; SPTR: Phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase YP_004171382.1 COGs: COG1692 conserved hypothetical protein; InterPro IPR004843: IPR005235; KEGG: dge:Dgeo_0662 metallophosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: Metallophosphoesterase; TIGRFAM: Conserved hypothetical protein CHP00282; TIGRFAM: metallophosphoesterase, MG_246/BB_0505 family YP_004171383.1 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dge:Dgeo_0813 hypothetical protein; PFAM: Domain of unknown function DUF214, ABC transporter permease; SPTR: lipoprotein releasing system, permease, LolC/E family; PFAM: Predicted permease YP_004171384.1 KEGG: dge:Dgeo_0383 hypothetical protein; SPTR: uncharacterized protein YP_004171385.1 COGs: COG3584 conserved hypothetical protein; KEGG: dge:Dgeo_0770 hypothetical protein; SPTR: 3D domain-containing protein YP_004171386.1 COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311: IPR001460; KEGG: dge:Dgeo_0768 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain YP_004171387.1 KEGG: dge:Dgeo_0767 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: cell division protein FtsL YP_004171388.1 COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; InterPro IPR002903; KEGG: dra:DR_1866 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; SPTR: ribosomal RNA small subunit methyltransferase H; TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW YP_004171389.1 COGs: COG2001 conserved hypothetical protein; HAMAP: MraZ; InterPro IPR020603: IPR003444; KEGG: dge:Dgeo_0765 cell division protein MraZ; PFAM: MraZ domain; SPTR: Protein MraZ; TIGRFAM: MraZ; PFAM: MraZ protein; TIGRFAM: mraZ protein YP_004171390.1 COGs: COG2363 Uncharacterized small membrane protein; InterPro IPR006696; KEGG: dge:Dgeo_0764 hypothetical protein; PFAM: Protein of unknown function DUF423; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF423) YP_004171391.1 COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR002942: IPR006145: IPR000748; KEGG: dge:Dgeo_0763 pseudouridine synthase, Rsu; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; SMART: RNA-binding S4; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase YP_004171392.1 KEGG: dge:Dgeo_0762 hypothetical protein; SPTR: uncharacterized protein YP_004171393.1 COGs: COG0130 Pseudouridine synthase; HAMAP: tRNA pseudouridine synthase II, TruB; InterPro IPR002501: IPR014780; KEGG: dra:DR_1323 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II; SPTR: tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase II, TruB; PFAM: TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase YP_004171394.1 COGs: COG1522 Transcriptional regulators; InterPro IPR000835: IPR019887: IPR019888; KEGG: dra:DR_1894 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; HTH transcriptional regulator, MarR; SMART: Transcription regulator AsnC-type; SPTR: Transcriptional regulator, AsnC family; PFAM: MarR family; AsnC family YP_004171395.1 COGs: COG0686 Alanine dehydrogenase; InterPro IPR007886: IPR007698: IPR008141; KEGG: ddr:Deide_18020 alanine dehydrogenase (alanine dehydrogenase 2); PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; PRIAM: Alanine dehydrogenase; SPTR: alanine dehydrogenase (Alanine dehydrogenase 2); TIGRFAM: Alanine dehydrogenase/pyridine nucleotide transhydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase YP_004171396.1 KEGG: dra:DR_1003 transcriptional regulator; SPTR: Transcriptional regulator YP_004171397.1 KEGG: rxy:Rxyl_2812 YmcC; SPTR: YmcC YP_004171398.1 COGs: COG2038 NaMN:DMB phosphoribosyltransferase; HAMAP: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic; InterPro IPR003200: IPR017846; KEGG: dge:Dgeo_2872 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like; PRIAM: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; SPTR: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM:Nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase, prokaryotic; PFAM: Phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_004171399.1 COGs: COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; InterPro IPR003203; KEGG: dra:DR_A0020 cobinamide kinase/cobinamide phosphate guanylyltransferase; PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase; PRIAM: Adenosylcobinamide-phosphate guanylyltransferase; SPTR: Cobinamide kinase/cobinamide phosphate guanylyltransferase; PFAM: Cobinamide kinase / cobinamide phosphate guanyltransferase YP_004171400.1 COGs: COG1797 Cobyrinic acid a c-diamide synthase; HAMAP: Cobyrinic acid a,c-diamide synthase CbiA; InterPro IPR002586: IPR011698: IPR004484; KEGG: dge:Dgeo_2349 cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase; SPTR: Cobyrinic acid a,c-diamide synthase; TIGRFAM: Cobyrinic acid a,c-diamide synthase CbiA; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyrinic acid a,c-diamide synthase YP_004171401.1 COGs: COG1492 Cobyric acid synthase; HAMAP: Cobyric acid synthase CobQ; InterPro IPR002586: IPR011698: IPR004459; KEGG: dge:Dgeo_2874 cobyric acid synthase CobQ; PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase; SPTR: Cobyric acid synthase; TIGRFAM: Cobyric acid synthase CobQ; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyric acid synthase CobQ YP_004171402.1 COGs: COG0079 histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839; KEGG: dra:DR_B0011 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/classII; SPTR: histidinol-phosphate aminotransferase; PFAM: Aminotransferase class I and II YP_004171403.1 COGs: COG1270 Cobalamin biosynthesis protein CobD/CbiB; InterPro IPR004485; KEGG: dge:Dgeo_2348 cobalamin biosynthesis protein CobD; PFAM: Cobalamin biosynthesis CobD/CbiB; SPTR: Cobalamin biosynthesis protein CobD; PFAM: CobD/Cbib protein; TIGRFAM: cobalamin biosynthesis protein CobD YP_004171404.1 COGs: COG2109 ATP:corrinoid adenosyltransferase; InterPro IPR003724; KEGG: dge:Dgeo_2362 cob(I)alamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: Cob(I)alamin adenosyltransferase; TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; TIGRFAM: cob(I)alamin adenosyltransferase YP_004171405.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: dge:Dgeo_2363 periplasmic binding protein; PFAM: Periplasmic binding protein; SPTR: ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein YP_004171406.1 KEGG: dge:Dgeo_0840 hypothetical protein; SPTR: uncharacterized protein YP_004171407.1 COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: dge:Dgeo_2366 phosphoglycerate mutase; PFAM: histidine phosphatase superfamily, clade-1; SMART: histidine phosphatase superfamily, clade-1; SPTR: Phosphoglycerate mutase; PFAM: Phosphoglycerate mutase family YP_004171408.1 COGs: COG0368 Cobalamin-5-phosphate synthase; HAMAP: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; InterPro IPR003805; KEGG: ddr:Deide_2p01460 cobalamin synthase; PFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; SPTR: Cobalamin synthase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; PFAM: Cobalamin-5-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase/cobalamin synthase YP_004171409.1 KEGG: ddr:Deide_05711 hypothetical protein; SPTR: uncharacterized protein YP_004171410.1 COGs: COG0143 Methionyl-tRNA synthetase; HAMAP: Methionyl-tRNA synthetase, class Ia; InterPro IPR015413: IPR002547: IPR014758: IPR004495; KEGG: dge:Dgeo_0724 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding domain; PRIAM: Methionine--tRNA ligase; SPTR: Methionyl-tRNA synthetase; TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; PFAM: tRNA synthetases class I (M); tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase YP_004171411.1 COGs: COG0366 Glycosidase; InterPro IPR006047: IPR006048: IPR006589; KEGG: dge:Dgeo_0611 alpha amylase, catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic domain; Alpha-amylase, C-terminal all beta; PRIAM: Cyclomaltodextrinase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Alpha amylase, catalytic region; PFAM: Alpha amylase, C-terminal all-beta domain; Alpha amylase, catalytic domain YP_004171412.1 COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646: IPR006674: IPR006675; KEGG: dra:DR_1191 tRNA nucleotidyltransferase/poly A polymerase; PFAM: Poly A polymerase, head domain; Metal-dependent phosphohydrolase, HD subdomain; SPTR: tRNA nucleotidyltransferase/poly A polymerase; TIGRFAM: Uncharacterised protein family HDIG; PFAM: HD domain; Poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG YP_004171413.1 InterPro IPR002477; KEGG: dra:DR_2159 hypothetical protein; PFAM: Peptidoglycan binding-like; SPTR: uncharacterized protein; PFAM: peptidoglycan binding domain YP_004171414.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: eca:ECA2974 MutT-like protein; PFAM: NUDIX hydrolase domain; SPTR: Nucleoside diphosphate-linked moiety X motif 18; PFAM: NUDIX domain YP_004171415.1 KEGG: ddr:Deide_15311 hypothetical protein; SPTR: uncharacterized protein YP_004171416.1 InterPro IPR000209; KEGG: dge:Dgeo_0457 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8 and S53, subtilisin, kexin, sedolisin; PFAM: Subtilase family YP_004171417.1 COGs: COG4850 conserved hypothetical protein; InterPro IPR019236; KEGG: dge:Dgeo_0459 hypothetical protein; PFAM: Protein of unknown function DUF2183; SPTR: Predicted phosphatase of HAD fold; PFAM: Uncharacterized conserved protein (DUF2183) YP_004171418.1 KEGG: dra:DR_0355 hypothetical protein; SPTR: uncharacterized protein YP_004171419.1 COGs: COG0708 Exonuclease III; InterPro IPR005135: IPR000097: IPR004808; KEGG: ddr:Deide_03250 exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: Exodeoxyribonuclease III; SPTR: exodeoxyribonuclease III; TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth) YP_004171420.1 COGs: COG0557 Exoribonuclease R; InterProIPR013223: IPR001900: IPR003029: IPR011805: IPR 004476: IPR011129: IPR022967; KEGG: dge:Dgeo_0460 ribonuclease R; PFAM: ribonuclease II/R; ribonuclease B, N-terminal OB domain; ribosomal protein S1, RNA-binding domain; PRIAM: Exoribonuclease II; SMART: ribonuclease II/R; Cold shock protein; RNA-binding domain, S1; SPTR: ribonuclease R; TIGRFAM: ribonuclease R, bacterial; ribonuclease II/ribonuclease R, bacteria; PFAM: ribonuclease B OB domain; RNB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases YP_004171421.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dge:Dgeo_0463 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: Methyltransferase domain YP_004171422.1 KEGG: sbp:Sbal223_3905 outer membrane adhesin like proteiin; SPTR: Outer membrane adhesin like proteiin YP_004171423.1 KEGG: afv:AFLA_107310 RNA-3'-phosphate cyclase; SPTR: RNA 3'-terminal phosphate cyclase YP_004171424.1 COGs: COG0439 Biotin carboxylase; InterPro IPR005481: IPR005479: IPR005482: IPR004549; KEGG: dge:Dgeo_0466 acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; PRIAM: Biotin carboxylase; SMART: Biotin carboxylase, C-terminal; SPTR: Acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit YP_004171425.1 COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); HAMAP: Translation elongation factor P; InterPro IPR013185: IPR001059: IPR015365: IPR011768; KEGG: dge:Dgeo_0468 elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor P/YeiP, central; Translation elongation factor, KOW-like; SMART: Elongation factor P, C-terminal; SPTR: Elongation factor P; TIGRFAM: Translation elongation factor P; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P YP_004171426.1 COGs: COG0280 Phosphotransacetylase; InterPro IPR010766: IPR002505: IPR004614; KEGG: dge:Dgeo_0051 phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase; DRTGG; PRIAM: Phosphate acetyltransferase; SPTR: Phosphate acetyltransferase; TIGRFAM: Phosphate acetyltransferase; PFAM: DRTGG domain; Phosphate acetyl/butaryl transferase; TIGRFAM: phosphate acetyltransferase YP_004171427.1 KEGG: dge:Dgeo_0492 hypothetical protein; SPTR: uncharacterized protein YP_004171428.1 KEGG: dra:DR_2212 hypothetical protein; SPTR: uncharacterized protein YP_004171429.1 COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097: IPR006096; KEGG: dge:Dgeo_0494 Glu/Leu/Phe/Val dehydrogenase; PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; PRIAM: Glutamate dehydrogenase (NAD(P)(+)); SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; SPTR: Glu/Leu/Phe/Val dehydrogenase; PFAM: Glutamate/Leucine/phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YP_004171430.1 COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097: IPR006096; KEGG: ddr:Deide_18260 glutamate dehydrogenase (NAD(P)(+)) (glutamate dehydrogenase, GDH); PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; PRIAM: Glutamate dehydrogenase (NAD(P)(+)); SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; SPTR: glutamate dehydrogenase (NAD(P)(+)) (Glutamate dehydrogenase, GDH); PFAM: Glutamate/Leucine/phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YP_004171431.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR000160: IPR001633; KEGG: tra:Trad_2626 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PRIAM: Diguanylate kinase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase/phosphodiesterase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004171432.1 KEGG: tra:Trad_2625 hypothetical protein; SPTR: uncharacterized protein YP_004171433.1 KEGG: acr:Acry_0299 ABC transporter related; SPTR: ABC transporter related protein YP_004171434.1 KEGG: ote:Oter_1678 hypothetical protein; SPTR: uncharacterized protein YP_004171435.1 COGs: COG0423 Glycyl-tRNA synthetase (class II); InterPro IPR002314: IPR004154: IPR002315; KEGG: dge:Dgeo_1716 glycyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; PRIAM: Glycine--tRNA ligase; SPTR: Glycyl-tRNA synthetase; TIGRFAM: Glycyl-tRNA synthetase, alpha2 dimer; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: glycyl-tRNA synthetase, dimeric type YP_004171436.1 KEGG: dra:DR_0673 hypothetical protein; SPTR: uncharacterized protein YP_004171437.1 KEGG: dra:DR_2137 hypothetical protein; SPTR: uncharacterized protein YP_004171438.1 COGs: COG3597 Uncharacterized protein/domain associated with GTPase; KEGG: ddr:Deide_16420 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF697) YP_004171439.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: dge:Dgeo_0620 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region YP_004171440.1 KEGG: ddr:Deide_16320 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: uncharacterized domain 1 YP_004171441.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933: IPR011650; KEGG: dge:Dgeo_1547 peptidase M20; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Beta-Ala-His dipeptidase; SPTR: Peptidase M20; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain YP_004171442.1 InterPro IPR004843; KEGG: dge:Dgeo_1549 metallophosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_004171443.1 COGs: COG0789 transcriptional regulator protein; InterPro IPR000551; KEGG: dge:Dgeo_1548 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; SPTR: HspR, global negative regulator of heat shock gene expression; PFAM: MerR family regulatory protein YP_004171444.1 InterPro IPR013099; KEGG: aba:Acid345_3013 K+ channel, inward rectifier; PFAM: Ion transport 2; SPTR: K+ channel, inward rectifier; PFAM: Inward rectifier potassium channel YP_004171445.1 COGs: COG5495 conserved hypothetical protein; InterPro IPR004455: IPR018931; KEGG: lch:Lcho_0023 NADP oxidoreductase coenzyme F420-dependent; PFAM: Domain of unknown function DUF2520; NADP oxidoreductase, coenzyme F420-dependent; SPTR: NADP oxidoreductase coenzyme F420-dependent; PFAM: Domain of unknown function (DUF2520); Rossmann-like domain YP_004171446.1 COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022; KEGG: dge:Dgeo_0811 propionyl-CoA carboxylase; PFAM: Carboxyl transferase; PRIAM: Methylcrotonoyl-CoA carboxylase; SPTR: Propionyl-CoA carboxylase; PFAM: Carboxyl transferase domain YP_004171447.1 COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: dge:Dgeo_0011 methionine gamma-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; SPTR: Methionine gamma-lyase; PFAM: Cys/Met metabolism PLP-dependent enzyme YP_004171448.1 KEGG: hvo:HVO_2462 transducer protein Htr37; SPTR: Transducer protein Htr37 YP_004171449.1 InterPro IPR015018; KEGG: hau:Haur_2209 hypothetical protein; PFAM: Protein of unknown function DUF1905; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1905) YP_004171450.1 KEGG: mrb:Mrub_0181 hypothetical protein; SPTR: uncharacterized protein YP_004171451.1 InterPro IPR001647; KEGG: dge:Dgeo_0788 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family YP_004171452.1 COGs: COG0546 phosphatase; InterPro IPR005834; KEGG: amt:Amet_2940 HAD family hydrolase; PFAM: haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED YP_004171453.1 COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265: IPR003651; KEGG: dge:Dgeo_0785 HhH-GPD; PFAM: Endonuclease III-like, iron-sulphur cluster loop motif; HhH-GPD domain; SMART: HhH-GPD domain; SPTR: Endonuclease III, alpha helical glycosidase superfamily; PFAM: HhH-GPD superfamily base excision DNA repair protein YP_004171454.1 KEGG: ade:Adeh_3507 hypothetical protein; SPTR: uncharacterized protein YP_004171455.1 KEGG: dge:Dgeo_0784 hypothetical protein; SPTR: uncharacterized protein YP_004171456.1 COGs: COG3705 ATP phosphoribosyltransferase involved in histidine biosynthesis; HAMAP: ATP phosphoribosyltransferase regulatory subunit; InterPro IPR002314: IPR004517; KEGG: ddr:Deide_12900 ATP phosphoribosyltransferase regulatory subunit; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; SPTR: ATP phosphoribosyltransferase regulatory subunit; histidine--tRNA ligase; TIGRFAM: histidyl-tRNA synthetase, class IIa, PFAM: tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: ATP phosphoribosyltransferase, regulatory subunit YP_004171457.1 COGs: COG0040 ATP phosphoribosyltransferase; HAMAP: ATP phosphoribosyltransferase; InterPro IPR013820; KEGG: ddr:Deide_12910 ATP phosphoribosyltransferase catalytic subunit; PFAM: ATP phosphoribosyltransferase, catalytic domain; PRIAM: ATP phosphoribosyltransferase; SPTR: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; PFAM: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase YP_004171458.1 COGs: COG2334 homoserine kinase type II (protein kinase fold); InterPro IPR002575; KEGG: lpp:plpp0135 hypothetical protein; PFAM: Aminoglycoside phosphotransferase; SPTR: uncharacterized protein; PFAM: Phosphotransferase enzyme family YP_004171459.1 InterPro IPR013656; KEGG: rlt:Rleg2_1658 PAS/PAC sensor hybrid histidine kinase; PFAM: PAS fold-4; SPTR: PAS/PAC sensor hybrid histidine kinase; PFAM: PAS fold YP_004171460.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR003018: IPR000160; KEGG: ddr:Deide_2p01040 diguanylate-cyclase; PFAM: Diguanylate cyclase, predicted; GAF; SMART: Diguanylate cyclase, predicted; GAF; SPTR: diguanylate-cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004171461.1 COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027; KEGG: dge:Dgeo_1949 NADH dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: NADH dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004171462.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843: IPR001761; KEGG: dge:Dgeo_0580 LacI family transcription regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family YP_004171463.1 COGs: COG0514 Superfamily II DNA helicase; InterPro IPR011545: IPR001650: IPR004589: IPR014001; KEGG: ddr:Deide_1p01280 ATP-dependent DNA helicase RecQ; PFAM: Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: ATP-dependent DNA helicase recQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family YP_004171464.1 COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782; KEGG: dge:Dgeo_0582 electron transport protein SCO1/SenC; PFAM: Copper chaperone SCO1/SenC; SPTR: Electron transport protein SCO1/SenC; PFAM: SCO1/SenC YP_004171465.1 COGs: COG3336 membrane protein; InterPro IPR019108; KEGG: dge:Dgeo_0583 membrane protein; PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; SPTR: Membrane protein; PFAM: Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) YP_004171466.1 KEGG: pma:Pro0223 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; SPTR: Major facilitator superfamily MFS_1 YP_004171467.1 COGs: COG2301 Citrate lyase beta subunit; InterPro IPR005000; KEGG: eba:p1B303 ATP/GTP-binding protein; PFAM: Aldehyde-lyase domain; SPTR: Predicted ATP/GTP-binding protein YP_004171468.1 COGs: COG2899 conserved hypothetical protein; InterPro IPR007427; KEGG: dra:DR_2226 hypothetical protein; PFAM: Protein of unknown function DUF475; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF475) YP_004171469.1 COGs: COG2310 Uncharacterized protein involved in stress response homologs of TerZ and cAMP-binding protein CABP1; InterPro IPR003325; KEGG: bur:Bcep18194_B0270 stress protein; PFAM: Bacterial stress protein; SPTR: Stress protein; PFAM: Bacterial stress protein YP_004171470.1 KEGG: lma:L3291.04 hypothetical protein; SPTR: uncharacterized protein L3291.04 YP_004171471.1 COGs: COG2310 Uncharacterized protein involved in stress response homologs of TerZ and cAMP-binding protein CABP1; InterPro IPR003325; KEGG: rru:Rru_A0893 stress protein; PFAM: Bacterial stress protein; SPTR: Stress protein; PFAM: tellurium resistance protein; Bacterial stress protein YP_004171472.1 COGs: COG2310 Uncharacterized protein involved in stress response homologs of TerZ and cAMP-binding protein CABP1; InterPro IPR003325: IPR002035; KEGG: alv:Alvin_0858 stress protein; PFAM: Bacterial stress protein; von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: tellurium resistance protein, ; PFAM: von Willebrand factor type A domain; Bacterial stress protein YP_004171473.1 COGs: COG2310 Uncharacterized protein involved in stress response homologs of TerZ and cAMP-binding protein CABP1; InterPro IPR003325; KEGG: aci:ACIAD1955 tellurium resistance protein; PFAM: Bacterial stress protein; SPTR: tellurium resistance protein; PFAM: Bacterial stress protein YP_004171474.1 COGs: COG2076 Membrane transporter of cations and cationic drugs; InterPro IPR000390; KEGG: gvi:glr4324 multidrug resistance protein EbrA-like protein; PFAM: Small multidrug resistance protein; SPTR: Glr4324 protein; PFAM: Small Multidrug Resistance protein YP_004171475.1 InterPro IPR001647; KEGG: sna:Snas_5248 transcriptional regulator, TetR family; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family YP_004171476.1 COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway); HAMAP: DNA-binding, RecF; InterPro IPR003395: IPR001238; KEGG: dra:DR_1089 recombination protein F; PFAM: RecF/RecN/SMC; SPTR: DNA replication and repair protein recF; TIGRFAM: DNA-binding, RecF; TIGRFAM: recF protein YP_004171477.1 COGs: COG5512 Zn-ribbon-containing possibly RNA-binding protein and truncated derivatives; InterPro IPR007922; KEGG: ddr:Deide_14260 hypothetical protein; PFAM: Protein of unknown function DUF721/UPF0232; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF721) YP_004171478.1 KEGG: dge:Dgeo_1244 hypothetical protein; SPTR: uncharacterized protein YP_004171479.1 COGs: COG0521 Molybdopterin biosynthesis protein; InterPro IPR001453: IPR020817; KEGG: dge:Dgeo_0596 molybdopterin binding domain-containing protein; PFAM: Molybdopterin binding; SMART: Molybdopterin binding; SPTR: Molybdopterin binding domain; TIGRFAM: Molybdenum cofactor synthesis; PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain YP_004171480.1 KEGG: ddr:Deide_14280 hypothetical protein; SPTR: uncharacterized protein YP_004171481.1 InterPro IPR006311; KEGG: msv:Mesil_0623 twin-arginine translocation pathway signal; SPTR: Twin-arginine translocation pathway signal YP_004171482.1 InterPro IPR019546: IPR006311; KEGG: msv:Mesil_0623 twin-arginine translocation pathway signal; SPTR: Twin-arginine translocation pathway signal; PFAM: TAT (twin-arginine translocation) pathway signal sequence; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004171483.1 COGs: COG0525 Valyl-tRNA synthetase; HAMAP: Valyl-tRNA synthetase; InterPro IPR002300: IPR013155: IPR019499: IPR002303; KEGG: dge:Dgeo_1951 valyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/isoleucyl-tRNA synthetase, class I, anticodon-binding; Valyl-tRNA synthetase, class Ia, tRNA-binding arm; PRIAM: Valine--tRNA ligase; SPTR: Valyl-tRNA synthetase; TIGRFAM: Valyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase YP_004171484.1 KEGG: seh:SeHA_C0201 fimbrial subunit; SPTR: fimbrial subunit YP_004171485.1 KEGG: dps:DP1963 hypothetical protein; SPTR: uncharacterized protein; PFAM: CARDB YP_004171486.1 KEGG: ddr:Deide_2p00670 hypothetical protein; SPTR: uncharacterized protein YP_004171487.1 COGs: COG1660 P-loop-containing kinase; HAMAP: ATPase, P-loop-containing; InterPro IPR005337; KEGG: ddr:Deide_09390 hypothetical protein; SPTR: UPF0042 nucleotide-binding protein Deide_09390; PFAM: P-loop ATPase family YP_004171488.1 COGs: COG0391 conserved hypothetical protein; InterPro IPR002882: IPR010119; KEGG: dge:Dgeo_0722 hypothetical protein; PFAM: LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052; SPTR: NAD(P)-binding Rossmann-fold enzyme; TIGRFAM: Uncharacterised protein family UPF0052; PFAM: Uncharacterised protein family UPF0052; TIGRFAM: conserved hypothetical protein, cofD-related YP_004171489.1 InterPro IPR019248; KEGG: ddr:Deide_13310 hypothetical protein; PFAM: Domain of unknown function DUF2223; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF2223) YP_004171490.1 COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: cse:Cseg_2537 HxlR family transcriptional regulator; PFAM: Helix-turn-helix, HxlR type; SPTR: Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix YP_004171491.1 COGs: COG3967 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein); InterPro IPR002198: IPR020842; KEGG: atu:Atu0864 oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR; SPTR: Oxidoreductase; PFAM: short chain dehydrogenase YP_004171492.1 InterPro IPR000620; KEGG: ddr:Deide_13300 hypothetical protein; PFAM: Drug/metabolite transporter; SPTR: uncharacterized protein; PFAM: EamA-like transporter family YP_004171493.1 KEGG: dge:Dgeo_1303 hypothetical protein; SPTR: uncharacterized protein YP_004171494.1 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dge:Dgeo_1376 hypothetical protein; PFAM: Domain of unknown function DUF214, ABC transporter permease; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004171495.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: dge:Dgeo_1377 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; PFAM: ABC transporter YP_004171496.1 KEGG: dge:Dgeo_1379 hypothetical protein; SPTR: uncharacterized protein YP_004171497.1 COGs: COG0787 Alanine racemase; HAMAP: Alanine racemase; InterPro IPR001608: IPR011079: IPR000821; KEGG: dge:Dgeo_1380 alanine racemase; PFAM: Alanine racemase, C-terminal; Alanine racemase, N-terminal; PRIAM: Alanine racemase; SPTR: Alanine racemase; TIGRFAM: Alanine racemase; PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; TIGRFAM: alanine racemase YP_004171498.1 COGs: COG3349 conserved hypothetical protein; InterPro IPR010451; KEGG: son:SO_1571 hypothetical protein; PFAM: Acetoacetate decarboxylase; SPTR: uncharacterized protein; PFAM: Acetoacetate decarboxylase (ADC) YP_004171499.1 COGs: COG0789 transcriptional regulator protein; InterPro IPR000551: IPR010499; KEGG: ddr:Deide_2p01800 transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; Bacterial transcription activator, effector binding; SPTR: transcriptional regulator, MerR family; PFAM: MerR family regulatory protein; Bacterial transcription activator, effector binding domain YP_004171500.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR011623: IPR000160; KEGG: ddr:Deide_21510 regulator protein, GGDEF domain, precursor; membrane protein; PFAM: Diguanylate cyclase, predicted; 7TM-DISM receptor, extracellular domain, type 1; SMART: Diguanylate cyclase, predicted; SPTR: regulator protein, GGDEF domain,; membrane protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: 7TM diverse intracellular signalling; GGDEF domain; 7TMR-DISM extracellular 2; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004171501.1 COGs: COG0547 Anthranilate phosphoribosyltransferase; HAMAP: Anthranilate phosphoribosyl transferase; InterPro IPR017459: IPR000312: IPR005940; KEGG: dge:Dgeo_0986 anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; PRIAM: Anthranilate phosphoribosyltransferase; SPTR: Anthranilate phosphoribosyltransferase; TIGRFAM: Anthranilate phosphoribosyl transferase; PFAM: Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase YP_004171502.1 COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterPro IPR000182: IPR000991: IPR006221; KEGG: ddr:Deide_09000 anthranilate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal; GCN5-related N-acetyltransferase (GNAT) domain; PRIAM: Anthranilate synthase; SPTR: Anthranilate synthase component II; TIGRFAM: Anthranilate synthase, glutamine amidotransferase domain; PFAM: Glutamine amidotransferase class-I; Acetyltransferase (GNAT) family; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase YP_004171503.1 COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR006805: IPR015890: IPR005256; KEGG: dge:Dgeo_0983 anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; PRIAM: Anthranilate synthase; SPTR: Anthranilate synthase component I; TIGRFAM: Anthranilate synthase component I, PabB-like; PFAM: Anthranilate synthase component I, N terminal region; chorismate binding enzyme; TIGRFAM: anthranilate synthase component I, non-proteobacterial lineages YP_004171504.1 KEGG: dge:Dgeo_1230 hypothetical protein; SPTR: uncharacterized protein YP_004171505.1 KEGG: slp:Slip_0247 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1795) YP_004171506.1 COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: dra:DR_2190 NADH-dependent flavin oxidoreductase, PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; PRIAM: NADPH dehydrogenase; SPTR: NADH-dependent flavin oxidoreductase, ; PFAM: NADH:flavin oxidoreductase / NADH oxidase family YP_004171507.1 COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: ddr:Deide_2p02070 major facilitator superfamily; membrane protein; PFAM: Major facilitator superfamily MFS-1; SPTR: major facilitator superfamily; membrane protein; PFAM: Major Facilitator Superfamily YP_004171508.1 COGs: COG1842 Phage shock protein A (IM30) suppresses sigma54-dependent transcription; InterPro IPR007157; KEGG: dge:Dgeo_0996 phage shock protein A, PspA; PFAM: PspA/IM30; SPTR: Phage shock protein A, PspA; PFAM: PspA/IM30 family YP_004171509.1 InterPro IPR006311; KEGG: dge:Dgeo_0995 hypothetical protein; SPTR: uncharacterized protein YP_004171510.1 COGs: COG1154 Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; InterPro IPR005475: IPR005476: IPR005477; KEGG: dge:Dgeo_0994 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase; SMART: Transketolase-like, pyrimidine-binding domain; SPTR: 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: Deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase YP_004171511.1 InterPro IPR004360; KEGG: mau:Micau_2843 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_004171512.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060; KEGG: fre:Franean1_6449 AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC type, DNA binding domain; SPTR: Helix-turn-helix, AraC domain protein YP_004171513.1 COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: ddr:Deide_04540 oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: oxidoreductase; PFAM: FAD dependent oxidoreductase YP_004171514.1 COGs: COG2022 Uncharacterized protein of thiazole biosynthesis; HAMAP: Thiazole biosynthesis; InterPro IPR008867; KEGG: dra:DR_A0172 thiazole synthase; PFAM: Thiazole biosynthesis; SPTR: Thiazole synthase; PFAM: Thiazole biosynthesis protein ThiG YP_004171515.1 InterPro IPR003749: IPR010035; KEGG: ddr:Deide_04525 hypothetical protein; PFAM: ThiamineS; SPTR: uncharacterized protein; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiS family; TIGRFAM: thiamine biosynthesis protein ThiS YP_004171516.1 COGs: COG0352 Thiamine monophosphate synthase; HAMAP: Thiamine monophosphate synthase; InterPro IPR003733; KEGG: ddr:Deide_04520 thiamine-phosphate diphosphorylase (thiamine-phosphate pyrophosphorylase); PFAM: Thiamine monophosphate synthase; SPTR: Thiamine-phosphate pyrophosphorylase; TIGRFAM: Thiamine monophosphate synthase; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase YP_004171517.1 COGs: COG0422 Thiamine biosynthesis protein ThiC; HAMAP: Thiamine biosynthesis protein ThiC; InterPro IPR002817; KEGG: dge:Dgeo_1924 thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC; SPTR: Phosphomethylpyrimidine synthase; TIGRFAM: Thiamine biosynthesis protein ThiC; PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC YP_004171518.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: kfl:Kfla_3180 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004171519.1 COGs: COG0351 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; InterPro IPR013749: IPR004399; KEGG: ddr:Deide_04550 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; PRIAM: Phosphomethylpyrimidine kinase; SPTR: phosphomethylpyrimidine kinase; TIGRFAM: Phosphomethylpyrimidine kinase type-2; PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase YP_004171520.1 COGs: COG0058 Glucan phosphorylase; InterPro IPR000811: IPR011834; KEGG: dge:Dgeo_1198 alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35; PRIAM: Phosphorylase; SPTR: Alpha-glucan phosphorylase; TIGRFAM: Alpha-glucan phosphorylase; PFAM: Carbohydrate phosphorylase; Protein of unknown function (DUF3417); TIGRFAM: alpha-glucan phosphorylases YP_004171521.1 KEGG: bbt:BBta_1811 hypothetical protein; SPTR: uncharacterized protein YP_004171522.1 KEGG: dra:DR_A0058 hypothetical protein; SPTR: uncharacterized protein YP_004171523.1 COGs: COG0514 Superfamily II DNA helicase; InterProIPR011545: IPR001650: IPR018982: IPR002121: IPR 006293: IPR004589: IPR014001; KEGG: ddr:Deide_11320 ATP-dependent DNA helicase; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SMART: RQC domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family YP_004171524.1 InterPro IPR003088; KEGG: ddr:Deide_16140 cytochrome c, precursor; PFAM: Cytochrome c, class I; SPTR: cytochrome c,; PFAM: Cytochrome c YP_004171525.1 COGs: COG2200 FOG: EAL domain; InterPro IPR001633; KEGG: hha:Hhal_0058 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; SMART: Diguanylate phosphodiesterase, EAL domain; SPTR: Diguanylate phosphodiesterase; PFAM: EAL domain YP_004171526.1 COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR013027: IPR004099; KEGG: dra:DR_0992 NADH oxidase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: CoA-disulfide reductase; SPTR: NADH oxidase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_004171527.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660: IPR003018: IPR003661: IPR003594: IPR 001789; KEGG: ddr:Deide_2p01010 histidine kinase, hybrid; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; HAMP linker domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; HAMP linker domain; Signal transduction response regulator, receiver domain; SPTR: histidine kinase, hybrid; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_004171528.1 COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR022641: IPR022642: IPR000780; KEGG: ddr:Deide_2p01020 protein-glutamate O-methyltransferase (methyl-accepting chemotaxis protein O-methyltransferase); PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type; SPTR: uncharacterized protein cheR; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain YP_004171529.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR001789: IPR013767: IPR003661: IPR003594: IPR 000014: IPR001610; KEGG: ddr:Deide_2p01030 histidine kinase, hybrid; PFAM: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: histidine kinase, hybrid; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004171530.1 KEGG: gur:Gura_2998 hypothetical protein; SPTR: uncharacterized protein YP_004171531.1 COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR000192; KEGG: dge:Dgeo_0713 aminotransferase, class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Serine--pyruvate transaminase; SPTR: Aminotransferase, class V; PFAM: Aminotransferase class-V YP_004171532.1 KEGG: dra:DR_1813 hypothetical protein; SPTR: uncharacterized protein; PFAM: Predicted membrane protein (DUF2154) YP_004171533.1 COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139: IPR006140: IPR002912: IPR006236; KEGG: dge:Dgeo_0710 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; Amino acid-binding ACT; PRIAM: Phosphoglycerate dehydrogenase; SPTR: D-3-phosphoglycerate dehydrogenase; TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; ACT domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase YP_004171534.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR003018: IPR013767: IPR013655: IPR013656: IPR 003661: IPR003594: IPR000014: IPR001610; KEGG: ddr:Deide_3p00530 histidine kinase, classic; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; GAF; PAS fold; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; PAS; GAF; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: histidine kinase, classic; TIGRFAM: PAS; PFAM: GAF domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_004171535.1 COGs: COG2360 Leu/Phe-tRNA-protein transferase; InterPro IPR004616; KEGG: dge:Dgeo_0708 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: Leucyl/phenylalanyl-tRNA-protein transferase; PRIAM: Leucyltransferase; SPTR: Leucyltransferase; TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; PFAM: Leucyl/phenylalanyl-tRNA protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA--protein transferase YP_004171536.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR018392: IPR016047: IPR002482; KEGG: dge:Dgeo_1516 peptidase M23B; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidase M23B; manually curated; PFAM: Peptidase family M23; LysM domain YP_004171537.1 COGs: COG1490 D-Tyr-tRNAtyr deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; InterPro IPR003732; KEGG: dge:Dgeo_1517 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_004171538.1 InterPro IPR014995; KEGG: ddr:Deide_09750 hypothetical protein; PFAM: Protein of unknown function DUF1844; SPTR: uncharacterized protein; manually curated; PFAM: Domain of unknown function (DUF1844) YP_004171539.1 COGs: COG1573 uracil-DNA glycosylase; InterPro IPR005122: IPR005273; KEGG: dge:Dgeo_1556 phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase-like; SPTR: uracil-DNA glycosylase; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4 YP_004171540.1 KEGG: ddr:Deide_09740 hypothetical protein; SPTR: uncharacterized protein YP_004171541.1 COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR018392: IPR000064: IPR002482; KEGG: ddr:Deide_09730 NLP/P60; PFAM: NLP/P60; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: NLP/P60; PFAM: NlpC/P60 family; LysM domain YP_004171542.1 COGs: COG2834 Outer membrane lipoprotein-sorting protein; KEGG: dge:Dgeo_1553 hypothetical protein; SPTR: Outer membrane lipoprotein-sorting protein, LolA family YP_004171543.1 KEGG: dge:Dgeo_1552 hypothetical protein; SPTR: uncharacterized protein YP_004171544.1 InterPro IPR013990; KEGG: dge:Dgeo_1551 hypothetical protein; SMART: Water stress and hypersensitive response domain; SPTR: Desiccation protectant protein Lea14; PFAM: Late embryogenesis abundant protein YP_004171546.1 COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR000120; KEGG: dge:Dgeo_1352 amidase; PFAM: Amidase; SPTR: Amidase; PFAM: Amidase YP_004171547.1 KEGG: dge:Dgeo_1353 hypothetical protein; SPTR: uncharacterized protein YP_004171548.1 KEGG: ddr:Deide_12121 hypothetical protein; SPTR: uncharacterized protein YP_004171549.1 COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: dge:Dgeo_1034 cell wall hydrolase/autolysin; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: Cell wall hydrolase/autolysin; PFAM: N-acetylmuramoyl-L-alanine amidase YP_004171550.1 KEGG: dra:DR_1714 hypothetical protein; SPTR: uncharacterized protein YP_004171551.1 COGs: COG0621 2-methylthioadenine synthetase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; InterProIPR013848: IPR007197: IPR005839: IPR006463: IPR 006638; KEGG: ddr:Deide_09680 (dimethylallyl)adenosine tRNA methylthiotransferase; PFAM: Methylthiotransferase, N-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: tRNA-i 6A37 modification enzyme MiaB (2-methylthioadenine synthetase); TIGRFAM: Methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family YP_004171552.1 KEGG: bse:Bsel_2250 periplasmic solute binding protein; SPTR: ABC-type Zn2+ transport system, periplasmic component/surface adhesin YP_004171553.1 InterPro IPR019004; KEGG: cfl:Cfla_0535 hypothetical protein; SPTR: uncharacterized protein; PFAM: Yqey-like protein YP_004171554.1 COGs: COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation; HAMAP: Folate-dependent ribothymidyl synthase; InterPro IPR002218: IPR004417; KEGG: ddr:Deide_05500 tRNA (uracil-5-)-methyltransferase Gid; PFAM: Glucose-inhibited division protein A-related; PRIAM:Methylenetetrahydrofolate--tRNA-(uracil-5-)-m ethyltransferase(FADH(2)-oxidizing); SPTR:Methylenetetrahydrofolate--tRNA-(uracil-5-)-me thyltransferasetrmFO; TIGRFAM: Folate-dependent ribothymidyl synthase; PFAM: Glucose inhibited division protein A; TIGRFAM: tRNA:m(5)U-54 methyltransferase YP_004171555.1 SPTR: D-serine/D-alanine/glycine transporter YP_004171556.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149: IPR014182: IPR020843; KEGG: rme:Rmet_4370 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SMART: Polyketide synthase, enoylreductase; SPTR: Zinc-containing alcohol dehydrogenase superfamily; TIGRFAM: Alcohol dehydrogenase, zinc-binding type 1; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: zinc-binding alcohol dehydrogenase YP_004171557.1 COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: bid:Bind_0952 HxlR family transcriptional regulator; PFAM: Helix-turn-helix, HxlR type; SPTR: Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix YP_004171558.1 COGs: COG0666 FOG: Ankyrin repeat; InterPro IPR002110; KEGG: ddr:Deide_16680 ankyrin; PFAM: Ankyrin repeat; SPTR: ankyrin; PFAM: Ankyrin repeat YP_004171559.1 KEGG: ddr:Deide_16690 hypothetical protein; SPTR: uncharacterized protein YP_004171560.1 KEGG: yli:YALI0B18194g YALI0B18194p; SPTR: YALI0B18194p YP_004171561.1 KEGG: sfu:Sfum_2371 hypothetical protein; SPTR: uncharacterized protein YP_004171562.1 COGs: COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase; InterPro IPR017941; KEGG: dge:Dgeo_0455 Rieske (2Fe-2S) region; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske (2Fe-2S) region; PFAM: Rieske [2Fe-2S] domain YP_004171563.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: ddr:Deide_03850 oxidoreductase; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; PRIAM: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; SPTR: Oxidoreductase; manually curated; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain YP_004171564.1 COGs: COG5640 Secreted trypsin-like serine protease; InterPro IPR001254; KEGG: ddr:Deide_09160 trypsin-like serine protease, precursor; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PRIAM: trypsin; SMART: Peptidase S1/S6, chymotrypsin/Hap; SPTR: trypsin-like serine protease,; PFAM: trypsin YP_004171565.1 COGs: COG4297 Uncharacterized protein containing double-stranded beta helix domain; InterPro IPR013096; KEGG: ppf:Pput_2437 double-stranded beta helix domain-containing protein; PFAM: Cupin 2, conserved barrel; SPTR: Uncharacterized protein containing double-stranded beta helix domain; PFAM: Cupin domain YP_004171566.1 COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825: IPR011542; KEGG: ddr:Deide_03330 FeS assembly protein SufD; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: FeS assembly protein SufD; TIGRFAM: SUF system FeS cluster assembly, SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD, group 1 YP_004171567.1 COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825: IPR010231; KEGG: dge:Dgeo_0473 FeS assembly protein SufB; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: FeS assembly protein SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB YP_004171568.1 KEGG: syf:Synpcc7942_2165 hypothetical protein; SPTR: uncharacterized protein YP_004171569.1 COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR003439: IPR010230; KEGG: ddr:Deide_03350 SUF system FeS assembly ATPase; PFAM: ABC transporter-like; SPTR: SUF system FeS assembly ATPase; TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC YP_004171570.1 COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: dge:Dgeo_1754 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel family YP_004171571.1 COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: ddr:Deide_03370 biopolymer transport protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein; PFAM: Biopolymer transport protein ExbD/TolR YP_004171572.1 KEGG: dge:Dgeo_1752 hypothetical protein; SPTR: uncharacterized protein YP_004171573.1 KEGG: dge:Dgeo_1751 hypothetical protein; SPTR: uncharacterized protein YP_004171574.1 COGs: COG1521 transcriptional regulator protein; HAMAP: Type III pantothenate kinase; InterPro IPR004619; KEGG: dge:Dgeo_1749 pantothenate kinase; PFAM: Type III pantothenate kinase; PRIAM: Pantothenate kinase; SPTR: Type III pantothenate kinase; TIGRFAM: Type III pantothenate kinase; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III YP_004171575.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; HAMAP: Chaperone DnaJ; InterPro IPR001623: IPR001305: IPR002939: IPR012724; KEGG: dge:Dgeo_0451 chaperone protein DnaJ; PFAM: Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich domain; Chaperone DnaJ, C-terminal; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Chaperone DnaJ-like protein; PFAM: DnaJ C terminal region; DnaJ central domain (4 repeats); DnaJ domain; TIGRFAM: chaperone protein DnaJ YP_004171576.1 KEGG: cag:Cagg_1035 hypothetical protein; SPTR: Glycoprotein gp2 YP_004171577.1 KEGG: dra:DR_A0058 hypothetical protein; SPTR: uncharacterized protein YP_004171578.1 COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR000836: IPR005946; KEGG: ddr:Deide_07620 ribose-phosphate diphosphokinase; PFAM: Phosphoribosyltransferase; PRIAM: ribose-phosphate diphosphokinase; SPTR: ribose-phosphate diphosphokinase; TIGRFAM: Phosphoribosyl pyrophosphokinase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase YP_004171579.1 KEGG: pti:PHATRDRAFT_42494 hypothetical protein; SPTR: Predicted protein YP_004171580.1 COGs: COG2343 conserved hypothetical protein; InterPro IPR007361; KEGG: dge:Dgeo_1745 hypothetical protein; PFAM: Protein of unknown function DUF427; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF427) YP_004171581.1 COGs: COG0366 Glycosidase; InterPro IPR006047: IPR003961: IPR006589; KEGG: dge:Dgeo_1746 alpha amylase, catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic domain; Fibronectin, type III; PRIAM: Cyclomaltodextrin glucanotransferase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Alpha amylase, catalytic region; PFAM: Alpha amylase, catalytic domain; Fibronectin type III domain YP_004171582.1 COGs: COG1392 Phosphate transport regulator (distant homolog of PhoU); InterPro IPR018445; KEGG: dge:Dgeo_1747 hypothetical protein; PFAM: Putitive phosphate transport regulator; SPTR: Phosphate transport protein Pit; PFAM: Protein of unknown function DUF47; TIGRFAM: conserved hypothetical protein TIGR00153 YP_004171583.1 COGs: COG0306 Phosphate/sulphate permease; InterPro IPR001204; KEGG: ddr:Deide_03410 low-affinity inorganic phosphate transporter; PFAM: Phosphate transporter; SPTR: low-affinity inorganic phosphate transporter; PFAM: Phosphate transporter family YP_004171584.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; KEGG: dra:DR_0462 hypothetical protein; SPTR: uncharacterized protein; PFAM: Periplasmic binding protein YP_004171585.1 COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; HAMAP: L-threonine 3-dehydrogenase; InterPro IPR013154: IPR013149: IPR004627: IPR020843; KEGG: dge:Dgeo_0449 L-threonine 3-dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; PRIAM: L-threonine 3-dehydrogenase; SMART: Polyketide synthase, enoylreductase; SPTR: L-threonine 3-dehydrogenase; TIGRFAM: L-threonine 3-dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase; L-threonine 3-dehydrogenase YP_004171586.1 KEGG: mrb:Mrub_2436 hypothetical protein; SPTR: uncharacterized protein; PFAM: Imelysin YP_004171587.1 COGs: COG0672 High-affinity Fe2+/Pb2+ permease; InterPro IPR004923; KEGG: mrb:Mrub_2435 iron permease FTR1; PFAM: Iron permease FTR1; SPTR: Iron permease FTR1; PFAM: Iron permease FTR1 family; TIGRFAM: FTR1 family protein YP_004171588.1 KEGG: dra:DR_1663 hypothetical protein; SPTR: uncharacterized protein YP_004171589.1 InterPro IPR015141; KEGG: mrb:Mrub_2508 hypothetical protein; PFAM: Phospholipase A2, prokaryotic/fungal; SPTR: uncharacterized protein; PFAM: Prokaryotic phospholipase A2 YP_004171590.1 COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843: IPR008334: IPR006294; KEGG: dge:Dgeo_0627 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; PFAM: 5'-Nucleotidase, C-terminal; Metallo-dependent phosphatase; PRIAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; SPTR: 2 ,3-cyclic-nucleotide 2-phosphodiesterase; TIGRFAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase; PFAM: Calcineurin-like phosphoesterase; 5'-nucleotidase, C-terminal domain; TIGRFAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase YP_004171591.1 COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; HAMAP: DNA polymerase IV; InterPro IPR001126: IPR022880; KEGG: gdj:Gdia_1185 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like; PRIAM: DNA-directed DNA polymerase; SPTR: DNA polymerase IV; PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family YP_004171592.1 KEGG: ddr:Deide_15311 hypothetical protein; SPTR: uncharacterized protein YP_004171593.1 COGs: COG2378 transcriptional regulator protein; InterPro IPR013196; KEGG: ddr:Deide_01080 transcriptional regulator; SPTR: transcriptional regulator; PFAM: HTH domain YP_004171594.1 InterPro IPR007837; KEGG: ddr:Deide_01090 DinB family protein; PFAM: DinB; SPTR: DinB family protein; PFAM: DinB family YP_004171595.1 COGs: COG2312 Erythromycin esterase homolog; InterPro IPR007815; KEGG: ddr:Deide_2p00990 erythromycin esterase; PFAM: Erythromycin esterase; SPTR: erythromycin esterase; PFAM: Erythromycin esterase YP_004171596.1 COGs: COG1926 phosphoribosyltransferase; InterPro IPR000836; KEGG: mno:Mnod_2322 erythromycin esterase; PFAM: Phosphoribosyltransferase; SPTR: Erythromycin esterase; PFAM: Phosphoribosyl transferase domain YP_004171597.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR013656: IPR000160: IPR000014; KEGG: drt:Dret_0330 diguanylate cyclase with PAS/PAC sensor; PFAM: Diguanylate cyclase, predicted; PAS fold-4; SMART: Diguanylate cyclase, predicted; PAS; SPTR: Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain YP_004171598.1 COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR020616: IPR020617: IPR002155; KEGG: dra:DR_2480 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; PRIAM: Acetyl-CoA C-acyltransferase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: Thiolase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases YP_004171599.1 COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176: IPR006108: IPR001753; KEGG: dge:Dgeo_0617 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; PRIAM: Dodecenoyl-CoA isomerase; SPTR: 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; PFAM: enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YP_004171600.1 KEGG: tjr:TherJR_2698 protein of unknown function DUF1648; SPTR: uncharacterized protein YP_004171601.1 KEGG: dge:Dgeo_0616 hypothetical protein; SPTR: uncharacterized protein YP_004171602.1 COGs: COG0730 permease; InterPro IPR002781; KEGG: ddr:Deide_21490 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: uncharacterized protein; PFAM: Sulfite exporter TauE/SafE YP_004171603.1 COGs: COG0793 Periplasmic protease; InterPro IPR005151: IPR001478; KEGG: dge:Dgeo_1216 peptidase S41; PFAM: Peptidase S41; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Peptidase S41; PFAM: Peptidase family S41; TIGRFAM: C-terminal peptidase (prc) YP_004171604.1 COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR018833: IPR002529; KEGG: dge:Dgeo_1217 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Fumarylacetoacetase, C-terminal-like; Domain of unknown function DUF2437; PRIAM: 5-carboxymethyl-2-hydroxymuconate Delta-isomerase; SPTR: 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Domain of unknown function (DUF2437); Fumarylacetoacetate (FAA) hydrolase family YP_004171605.1 InterPro IPR009597; KEGG: ddr:Deide_20070 hypothetical protein; PFAM: Domain of unknown function DUF1206; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1206) YP_004171606.1 InterPro IPR022791: IPR005242; KEGG: tra:Trad_2708 hypothetical protein; PFAM: Lysylphosphatidylglycerol synthetase/UPF0104; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein YP_004171607.1 COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: ddr:Deide_04630 diacylglycerol kinase; PFAM: Diacylglycerol kinase, catalytic domain; SMART: Diacylglycerol kinase, catalytic domain; SPTR: diacylglycerol kinase; PFAM: Diacylglycerol kinase catalytic domain YP_004171608.1 COGs: COG0613 metal-dependent phosphoesterase (PHP family); InterPro IPR004013: IPR003141; KEGG: dra:DR_2235 hypothetical protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal; SPTR: uncharacterized protein; PFAM: PHP domain YP_004171609.1 KEGG: bbe:BBR47_35910 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2716) YP_004171610.1 COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814; KEGG: dge:Dgeo_1219 aminotransferase class-III; PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Aminotransferase class-III; PFAM: Aminotransferase class-III YP_004171611.1 COGs: COG0372 Citrate synthase; InterPro IPR002020: IPR011278; KEGG: dra:DR_0757 citrate synthase; PFAM: Citrate synthase-like; PRIAM: Citrate (Si)-synthase; SPTR: Citrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase type I; PFAM: Citrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II YP_004171612.1 KEGG: fbl:Fbal_2916 transcriptional regulator, LacI family; SPTR: uncharacterized protein YP_004171613.1 KEGG: ddr:Deide_06160 hypothetical protein; SPTR: uncharacterized protein YP_004171614.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: dge:Dgeo_1528 beta-lactamase-like protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: Beta-lactamase-like protein; PFAM: Metallo-beta-lactamase superfamily YP_004171615.1 COGs: COG0226 ABC-type phosphate transport system periplasmic component; InterPro IPR006059: IPR005673; KEGG: ddr:Deide_2p01880 phosphate ABC transporter, periplasmic component, PstS; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: ABC-type phosphate transport system, periplasmic component, PstS; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: phosphate ABC transporter, phosphate-binding protein YP_004171616.1 COGs: COG0573 ABC-type phosphate transport system permease component; InterPro IPR000515: IPR011864; KEGG: ddr:Deide_2p01890 phosphate ABC transporter, permease component, PstC; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: phosphate ABC transporter, permease component, PstC; TIGRFAM: Phosphate ABC transporter, permease PstC; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease PstC YP_004171617.1 COGs: COG0581 ABC-type phosphate transport system permease component; InterPro IPR000515: IPR005672; KEGG: dge:Dgeo_0651 phosphate ABC transporter permease; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type phosphate transport system, permease component; TIGRFAM: Phosphate transport system permease 2; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease PstA YP_004171618.1 COGs: COG1117 ABC-type phosphate transport system ATPase component; InterPro IPR003439: IPR005670: IPR003593; KEGG: ddr:Deide_2p01910 phosphate ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Phosphate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: phosphate ABC transporter, ATP-binding component, PstB; TIGRFAM: Phosphate transport system permease 1; PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter, ATP-binding protein YP_004171619.1 COGs: COG0704 Phosphate uptake regulator; InterPro IPR008170; KEGG: dge:Dgeo_0653 phosphate uptake regulator, PhoU; PFAM: PhoU; SPTR: Phosphate uptake regulator, PhoU; TIGRFAM: PhoU; PFAM: PhoU domain; TIGRFAM: phosphate transport system regulatory protein PhoU YP_004171620.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR010259: IPR000209: IPR007280; KEGG: dge:Dgeo_0978 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Proteinase inhibitor I9, subtilisin propeptide; Peptidase, C-terminal, archaeal/bacterial; PRIAM: Aqualysin 1; SPTR: Peptidase S8 and S53, subtilisin, kexin, sedolisin; PFAM: Bacterial pre-peptidase C-terminal domain; Peptidase inhibitor I9; Subtilase family YP_004171621.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR010259: IPR000209; KEGG: dge:Dgeo_0978 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Proteinase inhibitor I9, subtilisin propeptide; PRIAM: Aqualysin 1; SPTR: Peptidase S8 and S53, subtilisin, kexin, sedolisin; PFAM: Peptidase inhibitor I9; Subtilase family YP_004171622.1 COGs: COG0131 imidazoleglycerol-phosphate dehydratase; HAMAP: imidazoleglycerol-phosphate dehydratase; InterPro IPR000807; KEGG: dge:Dgeo_0979 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase; PRIAM: imidazoleglycerol-phosphate dehydratase; SPTR: imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase YP_004171623.1 COGs: COG0118 Glutamine amidotransferase; HAMAP: imidazole glycerol phosphate synthase, subunit H; InterPro IPR000991: IPR010139; KEGG: ddr:Deide_09190 imidazole glycerol phosphate synthase subunit HisH; PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: imidazole glycerol phosphate synthase subunit hisH (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH); TIGRFAM: imidazole glycerol phosphate synthase, subunit H; PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_004171624.1 COGs: COG0296 1 4-alpha-glucan branching enzyme; HAMAP: 1,4-alpha-glucan-branching enzyme; InterProIPR004193: IPR006047: IPR006048: IPR006407: IPR 006589; KEGG: dge:Dgeo_0981 glycogen branching enzyme; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain; Alpha-amylase, C-terminal all beta; PRIAM: 1,4-alpha-glucan branching enzyme; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: 1,4-alpha-glucan-branching enzyme; TIGRFAM: 1,4-alpha-glucan-branching enzyme; PFAM: Alpha amylase, C-terminal all-beta domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; TIGRFAM: alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase YP_004171625.1 KEGG: dge:Dgeo_0982 hypothetical protein; SPTR: uncharacterized protein YP_004171626.1 InterPro IPR000073: IPR013595; KEGG: ddr:Deide_12130 alpha/beta hydrolase fold family protein with TAP domain, precursor; PFAM: Peptidase S33, tripeptidyl-peptidase C-terminal; Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold family protein with TAP domain,; PFAM: TAP-like protein YP_004171627.1 KEGG: dge:Dgeo_2414 hypothetical protein; SPTR: uncharacterized protein YP_004171628.1 COGs: COG2813 16S RNA G1207 methylase RsmC; InterPro IPR007848; KEGG: dge:Dgeo_1622 rRNA (guanine-N(2)-)-methyltransferase; PFAM: Methyltransferase small; SPTR: rRNA (Guanine-N(2)-)-methyltransferase; PFAM: Methyltransferase small domain YP_004171629.1 COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR009042: IPR007627: IPR007624: IPR007630: IPR 014284: IPR012760; KEGG: ddr:Deide_14380 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 factor, region 1.1; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoD, C-terminal domain YP_004171630.1 KEGG: ddr:Deide_14371 hypothetical protein; SPTR: uncharacterized protein YP_004171631.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011703: IPR003593; KEGG: ddr:Deide_14370 MoxR-like ATPases; magnesium chelatase; PFAM: ATPase, AAA-3; SMART: ATPase, AAA+ type, core; SPTR: MoxR-like ATPases; Magnesium chelatase; PFAM: ATPase family associated with various cellular activities (AAA) YP_004171632.1 COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: ddr:Deide_14360 hypothetical protein; PFAM: Domain of unknown function DUF58; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF58 YP_004171633.1 KEGG: dge:Dgeo_0477 hypothetical protein; SPTR: uncharacterized protein YP_004171634.1 COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR003718: IPR019953; KEGG: dra:DR_1857 organic hydroperoxide resistance protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: Organic hydroperoxide resistance protein; TIGRFAM: Peroxiredoxin, organic hydroperoxide resistance-related; PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, Ohr subfamily YP_004171635.1 COGs: COG2268 conserved hypothetical protein; InterPro IPR001107; KEGG: dge:Dgeo_0445 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Flotillin family protein; PFAM: SPFH domain / Band 7 family YP_004171636.1 KEGG: dge:Dgeo_0444 hypothetical protein; SPTR: uncharacterized protein YP_004171637.1 COGs: COG0259 Pyridoxamine-phosphate oxidase; HAMAP: Pyridoxamine 5'-phosphate oxidase; InterPro IPR011576: IPR019576: IPR000659; KEGG: dra:DR_0495 pyridoxamine 5-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal; PRIAM: Pyridoxal 5'-phosphate synthase; SPTR: Pyridoxine/pyridoxamine 5'-phosphate oxidase; TIGRFAM: Pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase; Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; TIGRFAM: pyridoxamine-phosphate oxidase YP_004171638.1 COGs: COG0266 formamidopyrimidine-DNA glycosylase; HAMAP: formamidopyrimidine-DNA glycosylase; InterProIPR012319: IPR015886: IPR010663: IPR000191: IPR 020629; KEGG: ddr:Deide_16240 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase; PRIAM: DNA-formamidopyrimidine glycosylase; SMART: DNA glycosylase/AP lyase, catalytic domain; SPTR: formamidopyrimidine-DNA glycosylase; TIGRFAM: DNA glycosylase/AP lyase; PFAM: formamidopyrimidine-DNA glycosylase H2TH domain; formamidopyrimidine-DNA glycosylase N-terminal domain; Zinc finger found in FPG and IleRS; TIGRFAM: formamidopyrimidine-DNA glycosylase (fpg) YP_004171639.1 KEGG: dya:Dyak_GE10494 GE10494 gene product from transcript GE10494-RA; SPTR: Wdn YP_004171640.1 COGs: COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase); InterPro IPR000816; KEGG: dge:Dgeo_0441 pyrrolidone-carboxylate peptidase; PFAM: Peptidase C15, pyroglutamyl peptidase I; PRIAM: Pyroglutamyl-peptidase I; SPTR: Pyroglutamyl-peptidase I; PFAM: Pyroglutamyl peptidase; TIGRFAM: pyroglutamyl-peptidase I YP_004171641.1 COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR006674: IPR006261: IPR003607; KEGG: mxa:MXAN_5163 deoxyguanosinetriphosphate triphosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; PRIAM: dGTPase; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase YP_004171642.1 KEGG: ddr:Deide_16251 hypothetical protein; SPTR: uncharacterized protein YP_004171643.1 KEGG: ddr:Deide_16270 conserved hypothetical protein, precursor; SPTR: uncharacterized protein YP_004171644.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dra:DR_0822 short chain dehydrogenase/reductase family oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-ACP reductase; SPTR: Oxidoreductase, short-chain dehydrogenase/reductase family; PFAM: short chain dehydrogenase YP_004171645.1 KEGG: sit:TM1040_1134 ComEC/Rec2-related protein; SPTR: Transcriptional regulator, PadR family YP_004171646.1 COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: ddr:Deide_10790 OsmC-like protein (osmotically-inducible protein C-like protein); PFAM: Peroxiredoxin, OsmC-like protein; SPTR: OsmC-like protein (Osmotically-inducible protein C-like protein); PFAM: OsmC-like protein YP_004171647.1 InterPro IPR000182; KEGG: rce:RC1_2464 acetyltransferase, GNAT family; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Acetyltransferase, GNAT family; PFAM: Acetyltransferase (GNAT) family YP_004171648.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR006189: IPR013767: IPR013655: IPR003018: IPR 003661: IPR003594: IPR001789: IPR000014: IPR001610; KEGG: ddr:Deide_10770 histidine kinase, classic; membrane protein; PFAM: ATPase-like, ATP-binding domain; CHASE; PAS fold; PAS fold-3; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAC motif; Signal transduction response regulator, receiver domain; SPTR: histidine kinase, classic; membrane protein; TIGRFAM: PAS; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; CHASE domain; PAS fold; TIGRFAM: PAS domain S-box YP_004171649.1 COGs: COG0169 shikimate 5-dehydrogenase; HAMAP: shikimate, quinate/shikimate dehydrogenase; InterPro IPR013708: IPR006151: IPR011342: IPR022893; KEGG: ddr:Deide_10760 shikimate dehydrogenase; PFAM: shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; SPTR: shikimate dehydrogenase; TIGRFAM: shikimate dehydrogenase; PFAM: shikimate dehydrogenase substrate binding domain; shikimate / quinate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase YP_004171650.1 COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR018111: IPR003714; KEGG: dge:Dgeo_1272 PhoH-like protein protein; PFAM: PhoH-like protein; K homology, type 1, subgroup; SPTR: PhoH-like protein, ATPase; PFAM: PhoH-like protein YP_004171651.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160; KEGG: pin:Ping_0273 diguanylate cyclase with PAS/PAC sensor; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004171652.1 COGs: COG0319 metal-dependent hydrolase; HAMAP: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; InterPro IPR002036; KEGG: ddr:Deide_10740 metal-dependent hydrolase (metalloprotease); PFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; SPTR: metalloprotease Deide_10740; TIGRFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family YP_004171653.1 COGs: COG0818 Diacylglycerol kinase; InterPro IPR000829; KEGG: ddr:Deide_10730 diacylglycerol kinase; PFAM: Diacylglycerol kinase, prokaryotic; SPTR: diacylglycerol kinase; PFAM: Prokaryotic diacylglycerol kinase YP_004171654.1 COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550: IPR000644: IPR005170; KEGG: dge:Dgeo_1285 hypothetical protein; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SMART: Cystathionine beta-synthase, core; SPTR: CBS domain-containing protein DUF21; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain YP_004171655.1 COGs: COG0295 Cytidine deaminase; InterPro IPR002125: IPR006262; KEGG: dra:DR_2177 cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: Cytidine deaminase; TIGRFAM: Cytidine deaminase, homotetrameric; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric YP_004171656.1 COGs: COG3644 conserved hypothetical protein; InterPro IPR018715; KEGG: dge:Dgeo_1037 hypothetical protein; PFAM: Protein of unknown function DUF2239; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2239) YP_004171657.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: tra:Trad_2171 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein YP_004171658.1 KEGG: mxa:MXAN_0975 hypothetical protein; SPTR: LuxR family transcriptional regulator YP_004171659.1 COGs: COG4371 membrane protein; KEGG: ddr:Deide_08530 conserved hypothetical protein, precursor; membrane protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1517) YP_004171660.1 COGs: COG2354 conserved hypothetical protein; InterPro IPR008526; KEGG: ddr:Deide_09970 hypothetical protein; PFAM: Protein of unknown function DUF808; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF808) YP_004171661.1 COGs: COG1200 RecG-like helicase; InterProIPR004365: IPR011545: IPR001650: IPR004609: IPR 014001; KEGG: ddr:Deide_09960 ATP-dependent DNA helicase RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: ATP-dependent DNA helicase; TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; OB-fold nucleic acid binding domain; TIGRFAM: ATP-dependent DNA helicase RecG YP_004171662.1 COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: dge:Dgeo_1140 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004171663.1 KEGG: dge:Dgeo_0564 hypothetical protein; SPTR: uncharacterized protein YP_004171664.1 COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); InterProIPR003711: IPR011545: IPR001650: IPR005118: IPR 014001; KEGG: dge:Dgeo_0545 transcription factor CarD; PFAM: Transcription factor CarD; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Transcription-repair-coupling factor domain; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: Transcription factor CarD; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd) YP_004171665.1 COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: dra:DR_1401 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase YP_004171666.1 COGs: COG2045 Phosphosulfolactate phosphohydrolase; HAMAP: 2-phosphosulpholactate phosphatase ComB; InterPro IPR005238: IPR022995; KEGG: dge:Dgeo_1318 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulpholactate phosphatase; SPTR: Probable 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulpholactate phosphatase YP_004171667.1 KEGG: dra:DR_1515 hypothetical protein; SPTR: uncharacterized protein YP_004171668.1 COGs: COG0014 gamma-glutamyl phosphate reductase; HAMAP: Glutamate-5-semialdehyde dehydrogenase; InterPro IPR000965: IPR012134; KEGG: dge:Dgeo_0993 gamma-glutamyl phosphate reductase; PRIAM: Glutamate-5-semialdehyde dehydrogenase; SPTR: gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase GPR; PFAM: Aldehyde dehydrogenase family; TIGRFAM: gamma-glutamyl phosphate reductase YP_004171669.1 COGs: COG0263 Glutamate 5-kinase; HAMAP: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; InterPro IPR001048: IPR002478: IPR005715; KEGG: dra:DR_1827 gamma-glutamyl kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: Glutamate 5-kinase; TIGRFAM: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; PFAM: PUA domain; Amino acid kinase family; TIGRFAM: glutamate 5-kinase YP_004171670.1 COGs: COG0120 ribose 5-phosphate isomerase; HAMAP: ribose-5-phosphate isomerase, type A, subgroup; InterPro IPR004788: IPR020672; KEGG: ddr:Deide_10910 ribose-5-phosphate isomerase; PFAM: ribose 5-phosphate isomerase, type A; PRIAM: ribose-5-phosphate isomerase; SPTR: ribose-5-phosphate isomerase A; TIGRFAM: ribose 5-phosphate isomerase, type A; PFAM: ribose 5-phosphate isomerase A (phosphoriboisomerase A); TIGRFAM: ribose 5-phosphate isomerase YP_004171671.1 COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: dra:DR_0846 bacterioferritin comigratory protein; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; SPTR: Bacterioferritin comigratory protein; PFAM: AhpC/TSA family YP_004171672.1 KEGG: sjp:SJA_C1-01170 cell division protein; SPTR: Cell division protein YP_004171673.1 COGs: COG0274 Deoxyribose-phosphate aldolase; HAMAP: Deoxyribose-phosphate aldolase, type 1; InterPro IPR002915: IPR011343: IPR022979; KEGG: dge:Dgeo_1266 deoxyribose-phosphate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: Deoxyribose-phosphate aldolase; SPTR: Deoxyribose-phosphate aldolase; TIGRFAM: Deoxyribose-phosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase YP_004171674.1 COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; HAMAP: Maf-like protein; InterPro IPR003697; KEGG: dge:Dgeo_1267 Maf-like protein; PFAM: Maf-like protein; SPTR: Maf-like protein Dgeo_1267; TIGRFAM: Maf-like protein; PFAM: Maf-like protein; TIGRFAM: MAF protein YP_004171675.1 COGs: COG1792 Cell shape-determining protein; InterPro IPR007221; KEGG: ddr:Deide_10870 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: Rod shape-determining protein MreC; PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC YP_004171676.1 KEGG: ddr:Deide_10860 rod shape-determining protein MreD; membrane protein; SPTR: Rod shape-determining protein MreD; membrane protein; TIGRFAM: rod shape-determining protein MreD YP_004171677.1 COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311: IPR001460; KEGG: ddr:Deide_10850 penicillin-binding protein 2/cell division protein FtsI; peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein 2/cell division protein FtsI; Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain YP_004171678.1 InterPro IPR011701; KEGG: ddr:Deide_07480 hypothetical protein; PFAM: Major facilitator superfamily MFS-1; SPTR: uncharacterized protein; PFAM: Major Facilitator Superfamily YP_004171679.1 COGs: COG0328 ribonuclease HI; HAMAP: ribonuclease H; InterPro IPR002156: IPR022892; KEGG: dra:DR_0899 ribonuclease H; PFAM: ribonuclease H domain; PRIAM: ribonuclease H; SPTR: ribonuclease H; PFAM: RNase H YP_004171680.1 InterPro IPR019587; KEGG: ddr:Deide_07430 hypothetical protein; PFAM: Polyketide cyclase/dehydrase; SPTR: uncharacterized protein; PFAM: Polyketide cyclase / dehydrase and lipid transport YP_004171681.1 COGs: COG1023 6-phosphogluconate dehydrogenase; InterPro IPR006115: IPR006114: IPR004849; KEGG: dge:Dgeo_1973 6-phosphogluconate dehydrogenase-like protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal; PRIAM: Phosphogluconate dehydrogenase (decarboxylating); SPTR: 6-phosphogluconate dehydrogenase, decarboxylating; TIGRFAM: 6-phosphogluconate dehydrogenase-related protein; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase; 6-phosphogluconate dehydrogenase, C-terminal domain; TIGRFAM: 6-phosphogluconate dehydrogenase (decarboxylating); 6-phosphogluconate dehydrogenase, decarboxylating YP_004171682.1 COGs: COG0364 Glucose-6-phosphate 1-dehydrogenase; InterPro IPR022674: IPR022675: IPR001282; KEGG: ddr:Deide_16460 glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase, C-terminal; Glucose-6-phosphate dehydrogenase, NAD-binding; PRIAM: Glucose-6-phosphate dehydrogenase; SPTR: Glucose-6-phosphate 1-dehydrogenase; TIGRFAM: Glucose-6-phosphate dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase, C-terminal domain; Glucose-6-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glucose-6-phosphate 1-dehydrogenase YP_004171683.1 COGs: COG3429 Glucose-6-P dehydrogenase subunit; InterPro IPR019297; KEGG: ddr:Deide_16470 glucose-6-P dehydrogenase subunit; PFAM: Glucose-6-phosphate dehydrogenase subunit; SPTR: glucose-6-P dehydrogenase subunit; PFAM: Glucose-6-phosphate dehydrogenase subunit YP_004171684.1 COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148: IPR005900; KEGG: dge:Dgeo_1976 6-phosphogluconolactonase; PFAM: Glucosamine/galactosamine-6-phosphate isomerase; PRIAM: 6-phosphogluconolactonase; SPTR: 6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase, DevB-type; PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase YP_004171685.1 COGs: COG1600 Uncharacterized Fe-S protein; InterPro IPR013542: IPR001450; KEGG: dge:Dgeo_1978 hypothetical protein; PFAM: Domain of unknown function DUF1730; 4Fe-4S binding domain; SPTR: uncharacterized protein; PFAM: HEAT repeat; Domain of unknown function (DUF1730); TIGRFAM: iron-sulfur cluster binding protein YP_004171686.1 KEGG: dge:Dgeo_1979 hypothetical protein; SPTR: Epoxide Hydrolase; PFAM: SnoaL-like polyketide cyclase YP_004171687.1 COGs: COG3823 Glutamine cyclotransferase; InterPro IPR007788; KEGG: dge:Dgeo_1980 glutamine cyclotransferase; PFAM: Glutamine cyclotransferase; SPTR: Glutamine cyclotransferase; PFAM: Glutamine cyclotransferase YP_004171688.1 COGs: COG0125 thymidylate kinase; HAMAP: thymidylate kinase; InterPro IPR018094; KEGG: ddr:Deide_16510 dTMP kinase (thymidylate kinase); PFAM: thymidylate kinase; PRIAM: dTMP kinase; SPTR: thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase; TIGRFAM: thymidylate kinase YP_004171689.1 COGs: COG0327 conserved hypothetical protein; InterPro IPR002678; KEGG: dge:Dgeo_1982 hypothetical protein; PFAM: NGG1p interacting factor 3, NIF3; SPTR: NIF3 family protein, DUF34; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family YP_004171690.1 InterPro IPR004360; KEGG: dge:Dgeo_1981 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/Dioxygenase YP_004171691.1 COGs: COG1378 transcriptional regulator protein; InterPro IPR002831; KEGG: dge:Dgeo_1985 transcriptional regulator, TrmB; PFAM: Transcription regulator TrmB, N-terminal; SPTR: Transcriptional regulator, TrmB; PFAM: Sugar-specific transcriptional regulator TrmB YP_004171692.1 COGs: COG0793 Periplasmic protease; InterPro IPR001478: IPR005151: IPR004447; KEGG: dge:Dgeo_1479 carboxyl-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Carboxyl-terminal protease containing PDZ and IRBP domains; TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_004171693.1 COGs: COG2884 ATPase involved in cell division; InterPro IPR003439: IPR005286: IPR003593; KEGG: ddr:Deide_10690 cell division ATP-binding protein FtsE; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Cell division ATP-binding protein ftsE; TIGRFAM: Cell division ATP-binding protein FtsE; PFAM: ABC transporter; TIGRFAM: cell division ATP-binding protein FtsE; Type II (General) Secretory Pathway (IISP) Family protein YP_004171694.1 COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: dge:Dgeo_1481 hypothetical protein; PFAM: Domain of unknown function DUF214, ABC transporter permease; SPTR: Cell division FtsX protein; PFAM: Predicted permease YP_004171695.1 InterPro IPR016047; KEGG: dge:Dgeo_1482 peptidase M23B; PFAM: Peptidase M23; SPTR: Peptidase M23B; PFAM: Peptidase family M23 YP_004171696.1 COGs: COG0228 ribosomal protein S16; HAMAP: ribosomal protein S16; InterPro IPR000307; KEGG: dge:Dgeo_1483 30S ribosomal protein S16; PFAM: ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; TIGRFAM: ribosomal protein S16 YP_004171697.1 COGs: COG1837 RNA-binding protein (contains KH domain); KEGG: dra:DR_2009 hypothetical protein; SPTR: uncharacterized protein YP_004171698.1 COGs: COG0806 RimM protein required for 16S rRNA processing; HAMAP: 16S rRNA processing protein RimM; InterPro IPR002676: IPR007903: IPR011961; KEGG: dge:Dgeo_1485 16S rRNA-processing protein RimM; PFAM: RimM protein; PRC-barrel; SPTR: ribosome maturation factor rimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM YP_004171699.1 COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; InterPro IPR016009: IPR002649; KEGG: dge:Dgeo_1486 tRNA (guanine-N(1)-)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase YP_004171700.1 COGs: COG2802 Uncharacterized protein similar to the N-terminal domain of Lon protease; InterPro IPR003111; KEGG: dge:Dgeo_1487 peptidase S16, lon-like protein; PFAM: Peptidase S16, lon N-terminal; SMART: Peptidase S16, lon N-terminal; SPTR: Peptidase S16, lon-like protein; PFAM: ATP-dependent protease La (LON) domain YP_004171701.1 KEGG: bcv:Bcav_2211 serine/threonine protein kinase; SPTR: PHD finger and BAH domain protein (Snt2) YP_004171702.1 COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205: IPR006691: IPR005743; KEGG: dge:Dgeo_1016 DNA gyrase, A subunit; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; SPTR: DNA gyrase, A subunit; TIGRFAM: DNA gyrase, subunit A; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit YP_004171703.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR001808; KEGG: dge:Dgeo_1015 CRP/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; SPTR: Transcriptional regulator, Crp/Fnr family; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain YP_004171704.1 COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027; KEGG: dge:Dgeo_1014 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Ferredoxin--NADP(+) reductase; SPTR: NADPH-ferredoxin reductase FprA; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004171705.1 COGs: COG2200 FOG: EAL domain; InterPro IPR013656: IPR000160: IPR001633: IPR000014; KEGG: dar:Daro_1052 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-4; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; SPTR: Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S); TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004171706.1 COGs: COG0492 Thioredoxin reductase; HAMAP: Ferredoxin--NADP reductase, type 2; InterPro IPR013027: IPR022890; KEGG: ddr:Deide_12541 thioredoxin-disulfide reductase (thioredoxin reductase); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Ferredoxin--NADP(+) reductase; SPTR: thioredoxin-disulfide reductase (Thioredoxin reductase); PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004171707.1 COGs: COG2746 Aminoglycoside N3'-acetyltransferase; InterPro IPR003679; KEGG: dge:Dgeo_1202 aminoglycoside 3-N-acetyltransferase; PFAM: Aminoglycoside 3-N-acetyltransferase; SPTR: Aminoglycoside 3-N-acetyltransferase; PFAM: Aminoglycoside 3-N-acetyltransferase YP_004171708.1 COGs: COG3968 Uncharacterized protein related to glutamine synthetase; InterPro IPR008146; KEGG: dge:Dgeo_1203 glutamine synthetase, catalytic region; PFAM: Glutamine synthetase, catalytic domain; SPTR: Glutamine synthetase, catalytic region; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal YP_004171709.1 COGs: COG0174 Glutamine synthetase; InterPro IPR008147: IPR008146: IPR004809; KEGG: dge:Dgeo_1204 glutamine synthetase, type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp; PRIAM: Glutamate--ammonia ligase; SPTR: Glutamine synthetase, type I; TIGRFAM: Glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I YP_004171710.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: ddr:Deide_12590 branched-chain amino acid ABC transporter, periplasmic component; extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: branched-chain amino acid ABC transporter, periplasmic component; extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region YP_004171711.1 COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: dge:Dgeo_1206 inner-membrane translocator; PFAM: ABC transporter permease; SPTR: ABC-type branched-chain amino acid transport system, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_004171712.1 COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: dge:Dgeo_1207 inner-membrane translocator; PFAM: ABC transporter permease; SPTR: ABC-type branched-chain amino acid transport system, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_004171713.1 COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439: IPR003593; KEGG: ddr:Deide_12620 branched-chain amino acid ABC transporter, ATP-binding component; PFAM: ABC transporter-like; PRIAM: monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Branched-chain amino acid ABC transporter, ATP-binding component; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_004171714.1 COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439: IPR003593; KEGG: ddr:Deide_12630 branched-chain amino acid ABC transporter, ATP-binding component; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Branched-chain amino acid ABC transporter, ATP-binding component; PFAM: ABC transporter YP_004171715.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: dge:Dgeo_1189 extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_004171716.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: ddr:Deide_10240 ABC transporter, permease component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type dipeptide transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004171717.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dge:Dgeo_1191 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type dipeptide transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004171718.1 COGs: COG0127 Xanthosine triphosphate pyrophosphatase; HAMAP: Nucleoside-triphosphatase; InterPro IPR002637: IPR020922; KEGG: dge:Dgeo_2209 deoxyribonucleotide triphosphate pyrophosphatase; PFAM: Ham1-like protein; PRIAM: Nucleoside-triphosphatase; SPTR: Nucleoside-triphosphatase; TIGRFAM: Ham1-like protein; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family YP_004171719.1 COGs: COG0689 RNase PH; InterPro IPR001247: IPR015847: IPR002381; KEGG: dge:Dgeo_2086 ribonuclease PH; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: ribonuclease PH; TIGRFAM: ribonuclease phosphorolytic, bacterial-type; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH YP_004171720.1 COGs: COG0796 Glutamate racemase; HAMAP: Glutamate racemase; InterPro IPR015942: IPR004391; KEGG: dge:Dgeo_2085 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; PRIAM: Glutamate racemase; SPTR: Glutamate racemase; TIGRFAM: Glutamate racemase; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase YP_004171721.1 InterPro IPR001450; KEGG: dge:Dgeo_0388 4Fe-4S ferredoxin, iron-sulfur binding; PFAM: 4Fe-4S binding domain; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding; PFAM: 4Fe-4S binding domain YP_004171722.1 KEGG: scl:sce2686 WD repeat-containing protein; SPTR: WD-40 repeat protein YP_004171723.1 KEGG: cfa:609248 similar to specifically androgen-regulated protein; SPTR: uncharacterized protein YP_004171724.1 COGs: COG0583 Transcriptional regulator; InterPro IPR000847: IPR005119; KEGG: dge:Dgeo_1692 LysR family transcriptional regulator; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain YP_004171725.1 KEGG: dge:Dgeo_1693 hypothetical protein; SPTR: uncharacterized protein YP_004171726.1 InterPro IPR005358; KEGG: ddr:Deide_02401 hypothetical protein; PFAM: Uncharacterised protein family UPF0153; SPTR: uncharacterized protein YP_004171727.1 InterPro IPR000182; KEGG: ddr:Deide_06930 acyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: acyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004171728.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149: IPR020843; KEGG: dge:Dgeo_0529 zinc-binding alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SMART: Polyketide synthase, enoylreductase; SPTR: NADPH:quinone reductase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_004171729.1 COGs: COG0112 Glycine/serine hydroxymethyltransferase; InterPro IPR001085; KEGG: ddr:Deide_20930 serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase; PRIAM: Glycine hydroxymethyltransferase; SPTR: Serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase YP_004171730.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: ddr:Deide_22120 regulator protein, GGDEF domain; membrane protein; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: regulator protein, GGDEF domain; membrane protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004171731.1 COGs: COG2206 HD-GYP domain; InterProIPR013655: IPR003018: IPR013656: IPR006674: IPR 000014: IPR001610: IPR003607; KEGG: ddr:Deide_2p00350 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; GAF; PAS fold-3; PAS fold-4; SMART: GAF; PAS; PAC motif; Metal-dependent phosphohydrolase, HD domain; SPTR: metal dependent phosphohydrolase; TIGRFAM: PAS; PFAM: HD domain; GAF domain; PAS fold; TIGRFAM: PAS domain S-box; uncharacterized domain HDIG YP_004171732.1 COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR001440: IPR011717: IPR000160: IPR019734; KEGG: msv:Mesil_0148 diguanylate cyclase and serine/threonine protein kinase with TPR repeats; PFAM: Diguanylate cyclase, predicted; Tetratricopeptide TPR-4; Tetratricopeptide TPR-1; SMART: Diguanylate cyclase, predicted; Tetratricopeptide repeat; SPTR: Diguanylate cyclase and serine/threonine protein kinase with TPR repeats; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; Tetratricopeptide repeat; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004171733.1 KEGG: bpm:BURPS1710b_3602 hypothetical protein; SPTR: Peptide chain release factor 2; manually curated; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2 YP_004171734.1 KEGG: ddr:Deide_16940 hypothetical protein; SPTR: uncharacterized protein YP_004171735.1 COGs: COG0754 Glutathionylspermidine synthase; InterPro IPR005494; KEGG: ddr:Deide_16950 glutathionylspermidine synthase; PFAM: Glutathionylspermidine synthase; SPTR: glutathionylspermidine synthase; PFAM: Glutathionylspermidine synthase YP_004171736.1 InterPro IPR006119; KEGG: dae:Dtox_1524 resolvase domain protein; PFAM: Resolvase, N-terminal; SMART: Resolvase, N-terminal; SPTR: Resolvase domain protein; PFAM: Recombinase; Resolvase, N terminal domain YP_004171737.1 InterPro IPR007016; KEGG: elm:ELI_4147 hypothetical protein; PFAM: O-antigen ligase-related; SPTR: uncharacterized protein; PFAM: O-Antigen ligase YP_004171738.1 InterPro IPR012902; KEGG: dra:DR_0548 pilin, type IV, SPTR: Pilin, type IV, ; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004171739.1 InterPro IPR012902; KEGG: tth:TTC0858 hypothetical protein; SPTR: PilA; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004171740.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: drt:Dret_0384 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1 YP_004171741.1 COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265: IPR003651: IPR005759; KEGG: dra:DR_0289 endonuclease III; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD domain; SPTR: Endonuclease III; TIGRFAM: Endonuclease III/Nth; PFAM: HhH-GPD superfamily base excision DNA repair protein; TIGRFAM: endonuclease III YP_004171742.1 InterPro IPR011701; KEGG: dge:Dgeo_0249 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily YP_004171743.1 COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: dge:Dgeo_0250 hypothetical protein; PFAM: Protein of unknown function DUF164; SPTR: Zn-ribbon protein, possibly nucleic acid-binding; PFAM: zinc ribbon domain YP_004171744.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: gwc:GWCH70_1566 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: Methyltransferase domain YP_004171745.1 COGs: COG0166 Glucose-6-phosphate isomerase; HAMAP: Phosphoglucose isomerase (PGI); InterPro IPR001672; KEGG: mrb:Mrub_2801 phosphoglucose isomerase (PGI); PFAM: Phosphoglucose isomerase (PGI); SPTR: Glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase YP_004171746.1 KEGG: ana:alr2634 hypothetical protein; SPTR: uncharacterized protein YP_004171747.1 KEGG: ddr:Deide_12690 hypothetical protein; SPTR: uncharacterized protein YP_004171748.1 COGs: COG0599 gamma-carboxymuconolactone decarboxylase subunit; InterPro IPR003779; KEGG: dge:Dgeo_0717 carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; SPTR: Carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain YP_004171749.1 COGs: COG1233 phytoene dehydrogenase and related protein; InterPro IPR002937; KEGG: dra:DR_A0363 P49 secreted protein; PFAM: Amine oxidase; SPTR: P49 secreted protein; PFAM: Flavin containing amine oxidoreductase YP_004171750.1 KEGG: ddr:Deide_05250 hypothetical protein; SPTR: uncharacterized protein YP_004171751.1 InterPro IPR011437; KEGG: ddr:Deide_05260 hypothetical protein; PFAM: Domain of unknown function DUF1540; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1540) YP_004171752.1 COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR000524: IPR004839; KEGG: dra:DR_0840 regulatory protein MocR, PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR; SPTR: Regulatory protein MocR, ; PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family YP_004171753.1 COGs: COG3467 flavin-nucleotide-binding protein; InterPro IPR007396; KEGG: dra:DR_0842 NimA-related protein; PFAM: Negative transcriptional regulator; SPTR: NimA-related protein; PFAM: Pyridoxamine 5'-phosphate oxidase YP_004171754.1 COGs: COG4992 Ornithine/acetylornithine aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; InterPro IPR005814: IPR004636; KEGG: dge:Dgeo_1416 acetylornithine aminotransferase; PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Acetylornithine and succinylornithine aminotransferase; TIGRFAM: Acetylornithine/succinylornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine aminotransferases YP_004171755.1 COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834: IPR006402; KEGG: dge:Dgeo_1667 HAD family hydrolase; PFAM: haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED YP_004171756.1 COGs: COG1393 Arsenate reductase and related protein glutaredoxin family; InterPro IPR006660; KEGG: dra:DR_0136 hypothetical protein; PFAM: Arsenate reductase-like; SPTR: uncharacterized protein; PFAM: ArsC family YP_004171757.1 KEGG: dge:Dgeo_1560 S-layer-like protein array-related protein; SPTR: S-layer-like protein array-related protein YP_004171758.1 COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: ddr:Deide_05070 ABC transporter, permease component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter, permease component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004171759.1 COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: dge:Dgeo_0906 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type sugar transport system, permease component; manually curated; PFAM: Binding-protein-dependent transport system inner membrane component YP_004171760.1 COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: dge:Dgeo_0905 extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein YP_004171761.1 COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: ddr:Deide_05040 transcriptional regulator, NagC family; PFAM: ROK; PRIAM: Glucokinase; SPTR: transcriptional regulator, NagC family; PFAM: ROK family YP_004171762.1 COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: tth:TTC0678 cadmium-zinc resistance protein CzrB; PFAM: Cation efflux protein; SPTR: Cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter YP_004171763.1 COGs: COG5316 conserved hypothetical protein; KEGG: dge:Dgeo_1339 hypothetical protein; SPTR: uncharacterized protein YP_004171764.1 COGs: COG1190 Lysyl-tRNA synthetase (class II); HAMAP: Lysyl-tRNA synthetase, class II; InterPro IPR002313: IPR004365: IPR004364; KEGG: dge:Dgeo_0903 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Lysine--tRNA ligase; SPTR: Lysyl-tRNA synthetase; TIGRFAM: Lysyl-tRNA synthetase, class II; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial YP_004171765.1 COGs: COG0782 Transcription elongation factor; InterPro IPR001437; KEGG: ddr:Deide_05020 transcription elongation factor; PFAM: Transcription elongation factor, GreA/GreB, C-terminal; SPTR: transcription elongation factor; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term YP_004171766.1 KEGG: ddr:Deide_13820 hypothetical protein; SPTR: uncharacterized protein YP_004171767.1 COGs: COG1381 Recombinational DNA repair protein (RecF pathway); HAMAP: Recombination protein O, RecO; InterPro IPR003717; KEGG: dge:Dgeo_0855 DNA repair protein RecO; PFAM: Recombination protein O, RecO; SPTR: DNA repair protein recO; TIGRFAM: Recombination protein O, RecO; manually curated; PFAM: Recombination protein O C terminal; Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO YP_004171768.1 COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: ddr:Deide_1p00750 glucose/sorbosone dehydrogenase, precursor; SPTR: glucose/sorbosone dehydrogenase,; PFAM: Glucose / Sorbosone dehydrogenase YP_004171769.1 COGs: COG2032 Cu/Zn superoxide dismutase; InterPro IPR001424: IPR013658; KEGG: ddr:Deide_1p00740 superoxide dismutase; PFAM: Superoxide dismutase, copper/zinc binding; SMP-30/Gluconolaconase/LRE-like region; SPTR: Superoxide dismutase [Cu-Zn]; PFAM: SMP-30/Gluconolaconase/LRE-like region; Copper/zinc superoxide dismutase (SODC) YP_004171770.1 InterPro IPR001919: IPR001223: IPR011583; KEGG: gym:GYMC10_5618 carbohydrate-binding family V/XII; PFAM: Glycoside hydrolase, family 18, catalytic domain; Cellulose-binding domain, family II, bacterial type; SMART: Cellulose-binding domain, family II, bacterial type; Chitinase II; SPTR: Chitinase Chi60; PFAM: Cellulose binding domain; Glycosyl hydrolases family 18 YP_004171771.1 KEGG: msl:Msil_1896 outer membrane autotransporter barrel domain protein; SPTR: Outer membrane autotransporter barrel domain protein YP_004171772.1 KEGG: ank:AnaeK_3521 hypothetical protein; SPTR: uncharacterized protein YP_004171773.1 COGs: COG1476 transcriptional regulator protein; InterPro IPR001387; KEGG: dra:DR_2454 PbsX family transcriptional regulator; PFAM: Helix-turn-helix type 3; SPTR: Transcriptional regulator, PbsX family; PFAM: Helix-turn-helix YP_004171774.1 COGs: COG1233 phytoene dehydrogenase and related protein; InterPro IPR006076; KEGG: dge:Dgeo_0849 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: phytoene dehydrogenase-like FAD dependent oxidoreductase; PFAM: Flavin containing amine oxidoreductase YP_004171775.1 COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: dge:Dgeo_0848 prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: UbiA prenyltransferase; PFAM: UbiA prenyltransferase family YP_004171776.1 COGs: COG0119 isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891; KEGG: ttj:TTHA1526 hydroxymethylglutaryl-CoA lyase like protein; PFAM: Pyruvate carboxyltransferase; PRIAM: hydroxymethylglutaryl-CoA lyase; SPTR: hydroxymethylglutaryl-CoA lyase; PFAM: HMGL-like YP_004171777.1 COGs: COG0789 transcriptional regulator protein; InterPro IPR000551: IPR006158; KEGG: tra:Trad_2664 regulatory protein MerR; PFAM: HTH transcriptional regulator, MerR; Cobalamin (vitamin B12)-binding; SMART: HTH transcriptional regulator, MerR; SPTR: Regulatory protein MerR; PFAM: MerR family regulatory protein; B12 binding domain YP_004171778.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR001808; KEGG: tra:Trad_2663 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain; SPTR: Transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain YP_004171779.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dge:Dgeo_0898 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family YP_004171780.1 KEGG: dra:DR_1422 hypothetical protein; SPTR: uncharacterized protein YP_004171781.1 COGs: COG1233 phytoene dehydrogenase and related protein; InterPro IPR002937: IPR014105; KEGG: ddr:Deide_2p01170 phytoene dehydrogenase; PFAM: Amine oxidase; SPTR: phytoene dehydrogenase; TIGRFAM: Zeta-phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase YP_004171782.1 COGs: COG1562 phytoene/squalene synthetase; InterPro IPR002060; KEGG: dge:Dgeo_0523 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase; PRIAM: phytoene synthase; SPTR: phytoene synthase, CrtB; PFAM: Squalene/phytoene synthase YP_004171783.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dge:Dgeo_0522 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR:2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1;4-b enzoquinolmethylase; PFAM: Methyltransferase domain YP_004171784.1 InterPro IPR009937; KEGG: dra:DR_0863 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1469) YP_004171785.1 KEGG: dge:Dgeo_0520 hypothetical protein; SPTR: uncharacterized protein YP_004171786.1 COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: dge:Dgeo_0519 ferric uptake regulator family protein; PFAM: Ferric-uptake regulator; SPTR: Ferric uptake regulator, Fur family; manually curated; PFAM: Ferric uptake regulator family YP_004171787.1 InterPro IPR001506: IPR006026; KEGG: lpp:lpp3071 hypothetical protein; PFAM: Peptidase M12A, astacin; PRIAM: Astacin; SMART: Peptidase, metallopeptidase; SPTR: Zinc metalloproteinase nas-13; PFAM: Astacin (Peptidase family M12A) YP_004171788.1 HAMAP: ribosomal protein L28; InterPro IPR001383; KEGG: ddr:Deide_07340 50S ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: 50S ribosomal protein L28 2; TIGRFAM: ribosomal protein L28; PFAM: ribosomal L28 family; TIGRFAM: ribosomal protein L28 YP_004171789.1 COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006127; KEGG: dge:Dgeo_0534 periplasmic solute binding protein; PFAM: ABC transporter metal-binding lipoprotein; SPTR: ABC-type Mn2+ transport system, periplasmic component; PFAM: Periplasmic solute binding protein family YP_004171790.1 COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003439: IPR003593; KEGG: dge:Dgeo_0533 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type Mn2+ transport system, ATPase component; PFAM: ABC transporter YP_004171791.1 COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: dra:DR_2283 manganese ABC transporter, permease, PFAM: ABC-3; SPTR: manganese ABC transporter, permease, ; PFAM: ABC 3 transport family YP_004171792.1 KEGG: gob:Gobs_0527 ferric iron reductase; SPTR: Ferric iron reductase YP_004171793.1 COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: dge:Dgeo_0528 NADH dehydrogenase; PFAM: Nitroreductase-like; PRIAM: NADH dehydrogenase; SPTR: NADH dehydrogenase; PFAM: Nitroreductase family YP_004171794.1 COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: dra:DR_1969 hypothetical protein; PFAM: Helix-turn-helix, HxlR type; SPTR: uncharacterized protein; PFAM: HxlR-like helix-turn-helix YP_004171795.1 COGs: COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase; InterPro IPR016048: IPR019949; KEGG: rxy:Rxyl_3089 luciferase-like protein; PFAM: Luciferase-like, subgroup; SPTR: Luciferase-like protein; TIGRFAM: Luciferase family oxidoreductase, group 1; PFAM: Luciferase-like monooxygenase; TIGRFAM: luciferase family oxidoreductase, group 1 YP_004171796.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545: IPR001650: IPR014001; KEGG: dge:Dgeo_0603 DEAD/DEAH box helicase-like protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: DEAD/DEAH box helicase-like protein; PFAM: Helicase conserved C-terminal domain; GUCT (NUC152) domain; DEAD/DEAH box helicase YP_004171797.1 KEGG: ppm:PPSC2_c0580 hypothetical protein; SPTR: uncharacterized protein YP_004171798.1 COGs: COG1435 thymidine kinase; HAMAP: thymidine kinase, subgroup; InterPro IPR020634: IPR001267; KEGG: dge:Dgeo_0578 thymidine kinase; PFAM: thymidine kinase; PRIAM: thymidine kinase; SPTR: thymidine kinase; PFAM: thymidine kinase YP_004171799.1 COGs: COG0254 ribosomal protein L31; HAMAP: ribosomal protein L31; InterPro IPR002150; KEGG: ddr:Deide_06670 50S ribosomal protein L31; PFAM: ribosomal protein L31; SPTR: 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; TIGRFAM: ribosomal protein L31 YP_004171800.1 COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: ddr:Deide_3p00280 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: transcriptional regulator, MarR family; PFAM: MarR family YP_004171801.1 COGs: COG3238 conserved hypothetical protein; InterPro IPR006750; KEGG: dra:DR_1113 hypothetical protein; PFAM: Protein of unknown function DUF606; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF606 YP_004171802.1 COGs: COG3238 conserved hypothetical protein; InterPro IPR006750; KEGG: dra:DR_1112 hypothetical protein; PFAM: Protein of unknown function DUF606; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF606 YP_004171803.1 COGs: COG0784 FOG: CheY-like receiver; InterPro IPR001789; KEGG: ddr:Deide_3p02360 response regulator, CheY; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: response regulator, CheY; PFAM: Response regulator receiver domain YP_004171804.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR013656: IPR003661: IPR003594; KEGG: ddr:Deide_3p02370 histidine kinase, classic, bacteriophytochrome; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: histidine kinase, classic, bacteriophytochrome; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold YP_004171805.1 InterPro IPR011701; KEGG: ddr:Deide_21160 major facilitator superfamily protein; membrane protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily protein; membrane protein; PFAM: Major Facilitator Superfamily YP_004171806.1 COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); HAMAP: DNA mismatch repair protein, MutL; InterProIPR020667: IPR003594: IPR013507: IPR014790: IPR 014763; KEGG: dge:Dgeo_1538 DNA mismatch repair protein MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATPase-like, ATP-binding domain; SMART: MutL, C-terminal, dimerisation; SPTR: DNA mismatch repair protein mutL; TIGRFAM: DNA mismatch repair protein, N-terminal; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; MutL C terminal dimerisation domain; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL YP_004171807.1 COGs: COG0249 Mismatch repair ATPase (MutS family); InterProIPR007695: IPR007860: IPR007696: IPR007861: IPR 000432: IPR005748; KEGG: dge:Dgeo_1537 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, clamp; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; SPTR: DNA mismatch repair protein MutS; TIGRFAM: DNA mismatch repair protein MutS, type 1; PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS YP_004171808.1 KEGG: lbz:LbrM11_V2.1090 hypothetical protein; SPTR: uncharacterized protein YP_004171809.1 KEGG: bbt:BBta_5474 hypothetical protein; SPTR: uncharacterized protein YP_004171810.1 InterPro IPR009916; KEGG: bca:BCE_2942 CcdC protein; PFAM: Protein of unknown function DUF1453; SPTR: Ccdc protein; PFAM: Protein of unknown function (DUF1453) YP_004171811.1 COGs: COG2124 Cytochrome P450; InterPro IPR001128; KEGG: dge:Dgeo_0944 cytochrome P450; PFAM: Cytochrome P450; PRIAM: Linalool 8-monooxygenase; SPTR: Cytochrome P450; PFAM: Cytochrome P450 YP_004171812.1 KEGG: bpa:BPP1045 hypothetical protein; SPTR: riboflavin biosynthesis protein RibD YP_004171813.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: ddr:Deide_02630 major facilitator superfamily MFS_1 transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1 transporter; PFAM: Major Facilitator Superfamily YP_004171814.1 KEGG: dge:Dgeo_1310 hypothetical protein; SPTR: uncharacterized protein YP_004171815.1 InterPro IPR000551: IPR010093; KEGG: ddr:Deide_08155 hypothetical protein; PFAM: HTH transcriptional regulator, MerR; SPTR: uncharacterized protein; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: MerR family regulatory protein; TIGRFAM: DNA binding domain, excisionase family YP_004171816.1 COGs: COG2306 conserved hypothetical protein; KEGG: ddr:Deide_08860 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF402) YP_004171817.1 COGs: COG1811 Uncharacterized membrane protein possible Na+ channel or pump; InterPro IPR007563; KEGG: dra:DR_1630 hypothetical protein; PFAM: Protein of unknown function DUF554; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF554) YP_004171818.1 COGs: COG3263 NhaP-type Na+/H+ and K+/H+ antiporter with a unique C-terminal domain; InterPro IPR006153: IPR006037; KEGG: dge:Dgeo_0222 potassium/proton antiporter; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, C-terminal; SPTR: Sodium/hydrogen exchanger; PFAM: Sodium/hydrogen exchanger family; TrkA-C domain YP_004171819.1 KEGG: ddr:Deide_3p02390 hypothetical protein; SPTR: uncharacterized protein YP_004171820.1 COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; KEGG: dge:Dgeo_0943 hypothetical protein; SPTR: Aminotransferase MocR family YP_004171821.1 KEGG: rme:Rmet_4527 spermine synthase; SPTR: Spermine synthase YP_004171822.1 COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; HAMAP: Glu-tRNAGln amidotransferase, C subunit; InterPro IPR003837; KEGG: ddr:Deide_05330 aspartyl/glutamyl-tRNA amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase, C subunit; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit YP_004171823.1 COGs: COG0172 Seryl-tRNA synthetase; HAMAP: Seryl-tRNA synthetase, class IIa; InterPro IPR002317: IPR015866: IPR002314; KEGG: dge:Dgeo_0934 seryl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal; PRIAM: Serine--tRNA ligase; SPTR: Seryl-tRNA synthetase; TIGRFAM: Seryl-tRNA synthetase, class IIa; PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase YP_004171824.1 InterPro IPR000620; KEGG: ddr:Deide_19975 hypothetical protein; PFAM: Drug/metabolite transporter; SPTR: uncharacterized protein; PFAM: EamA-like transporter family YP_004171825.1 COGs: COG3293 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: sma:SAV_18 IS1647-like transposase; PFAM: Transposase, IS4-like; SPTR: IS5 family IS1648-like transposase; PFAM: Transposase DDE domain YP_004171826.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: dge:Dgeo_2493 beta-lactamase-like; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: Beta-lactamase-like protein; manually curated; PFAM: Metallo-beta-lactamase superfamily YP_004171827.1 COGs: COG1119 ABC-type molybdenum transport system ATPase component/photorepair protein PhrA; InterPro IPR003439: IPR003593; KEGG: dge:Dgeo_1736 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC-type transport system, ATPase component/photorepair protein PhrA; PFAM: ABC transporter YP_004171828.1 COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR013200: IPR006379; KEGG: dge:Dgeo_1737 HAD family hydrolase; PFAM: HAD superfamily hydrolase-like, type 3; SPTR: HAD-superfamily hydrolase subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB YP_004171829.1 COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: ddr:Deide_20250 enoyl-CoA hydratase; PFAM: Crotonase, core; SPTR: enoyl-CoA hydratase (enoyl hydrase,unsaturated acyl-CoA hydratase); PFAM: enoyl-CoA hydratase/isomerase family YP_004171830.1 KEGG: dra:DR_0486 hypothetical protein; SPTR: uncharacterized protein YP_004171831.1 COGs: COG0465 ATP-dependent Zn protease; InterProIPR011546: IPR003959: IPR000642: IPR005936: IPR 003593; KEGG: dge:Dgeo_2075 ATP-dependent metalloprotease FtsH; PFAM: ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; Peptidase M41; PRIAM: Microtubule-severing ATPase; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent metalloprotease FtsH; TIGRFAM: Peptidase M41, FtsH; PFAM: Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH YP_004171832.1 COGs: COG0443 Molecular chaperone; HAMAP: Chaperone DnaK; InterPro IPR012725: IPR013126; KEGG: ddr:Deide_21970 molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: Chaperone protein dnaK; TIGRFAM: Chaperone DnaK; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK YP_004171833.1 COGs: COG0576 Molecular chaperone GrpE (heat shock protein); HAMAP: GrpE nucleotide exchange factor; InterPro IPR000740; KEGG: ddr:Deide_21980 protein GrpE, HSP-70 cofactor; PFAM: GrpE nucleotide exchange factor; SPTR: Protein grpE; PFAM: GrpE YP_004171834.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623: IPR002939; KEGG: dge:Dgeo_2078 chaperone DnaJ-like protein; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Chaperone DnaJ-like protein; PFAM: DnaJ C terminal region; DnaJ domain YP_004171835.1 KEGG: dge:Dgeo_2514 tetratricopeptide TPR_2; SPTR: uncharacterized protein YP_004171836.1 COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439: IPR003593; KEGG: dge:Dgeo_0799 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type branched-chain amino acid transport system, ATPase component; PFAM: ABC transporter YP_004171837.1 COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439: IPR003593; KEGG: ddr:Deide_14780 branched-chain amino acid ABC transporter, ATP-binding component; PFAM: ABC transporter-like; PRIAM: monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type branched-chain amino acid transport system, ATPase component; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_004171838.1 COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: ddr:Deide_14790 branched-chain amino acid ABC transporter, permease component; PFAM: ABC transporter permease; SPTR: branched-chain amino acid ABC transporter, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_004171839.1 COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: dge:Dgeo_0802 inner-membrane translocator; PFAM: ABC transporter permease; SPTR: ABC-type branched-chain amino acid transport system, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_004171840.1 InterPro IPR000073; KEGG: dge:Dgeo_0803 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold YP_004171841.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: ddr:Deide_14810 branched-chain amino acid ABC transporter, periplasmic component; PFAM: Extracellular ligand-binding receptor; SPTR: branched-chain amino acid ABC transporter, periplasmic component; PFAM: Receptor family ligand binding region YP_004171842.1 COGs: COG2021 homoserine acetyltransferase; KEGG: dge:Dgeo_0807 homoserine O-acetyltransferase; PRIAM: homoserine O-acetyltransferase; SPTR: homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase YP_004171843.1 COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165: IPR012792; KEGG: dge:Dgeo_0808 3-oxoacid CoA-transferase, subunit A; PFAM: Coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SMART: Coenzyme A transferase; SPTR: 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit YP_004171844.1 COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; InterPro IPR004165: IPR012791; KEGG: dra:DR_A0067 CoA transferase, subunit B; PFAM: Coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SMART: Coenzyme A transferase; SPTR: CoA transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit YP_004171845.1 COGs: COG2909 ATP-dependent transcriptional regulator protein; InterPro IPR005158; KEGG: dge:Dgeo_0954 TPR repeat-containing protein; PFAM: Bacterial transcriptional activator domain; SPTR: ATP-dependent transcriptional regulator; PFAM: Bacterial transcriptional activator domain YP_004171846.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dge:Dgeo_0952 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-hydroxybutyrate dehydrogenase; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase YP_004171847.1 COGs: COG2017 Galactose mutarotase; InterPro IPR008183; KEGG: dge:Dgeo_2798 aldose 1-epimerase; PFAM: Aldose 1-epimerase; PRIAM: Aldose 1-epimerase; SPTR: Aldose 1-epimerase; PFAM: Aldose 1-epimerase YP_004171848.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092: IPR006091: IPR006090; KEGG: dge:Dgeo_0736 acyl-CoA dehydrogenase-like protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; PRIAM: Acyl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase-like protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_004171849.1 KEGG: ddr:Deide_08580 hypothetical protein; SPTR: uncharacterized protein YP_004171850.1 COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843: IPR008334; KEGG: ddr:Deide_13330 5 -nucleotidases (UshA), precursor; PFAM: 5'-Nucleotidase, C-terminal; Metallo-dependent phosphatase; PRIAM: 5'-nucleotidase; SPTR: 5-nucleotidases (UshA),; PFAM: Calcineurin-like phosphoesterase; 5'-nucleotidase, C-terminal domain YP_004171851.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092: IPR006091: IPR006090; KEGG: dge:Dgeo_1179 acyl-CoA dehydrogenase-like protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase-like protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_004171852.1 COGs: COG0761 Penicillin tolerance protein; HAMAP: LytB protein; InterPro IPR003451; KEGG: dra:DR_2164 LytB protein; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: LytB protein; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) YP_004171853.1 KEGG: ddr:Deide_09950 hypothetical protein; SPTR: uncharacterized protein YP_004171854.1 COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; KEGG: dra:DR_2089 ferripyochelin-binding protein; SPTR: Ferripyochelin-binding protein YP_004171855.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: dge:Dgeo_1007 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; PFAM: NUDIX domain YP_004171856.1 COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: dge:Dgeo_1004 cystathionine gamma-synthase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; SPTR: Cystathionine gamma-synthase; PFAM: Cys/Met metabolism PLP-dependent enzyme YP_004171857.1 COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: dge:Dgeo_0458 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Estradiol 17-beta-dehydrogenase; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004171858.1 COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR004136; KEGG: ddr:Deide_09560 2-nitropropane dioxygenase (2-NPD) (nitroalkane oxidase); membrane protein; PFAM: 2-nitropropane dioxygenase, NPD; PRIAM: 2-nitropropane dioxygenase; SPTR: 2-nitropropane dioxygenase (2-NPD) (Nitroalkane oxidase); membrane protein; PFAM: 2-nitropropane dioxygenase YP_004171859.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR023210; KEGG: dge:Dgeo_2171 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain; PRIAM: Pyridoxine 4-dehydrogenase; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase family YP_004171860.1 COGs: COG0789 transcriptional regulator protein; InterPro IPR000551: IPR015358; KEGG: fra:Francci3_1516 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; Transcription regulator MerR, DNA binding; SMART: HTH transcriptional regulator, MerR; SPTR: Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein; MerR, DNA binding YP_004171861.1 COGs: COG1914 Mn2+ and Fe2+ transporter of the NRAMP family; HAMAP: manganese transport protein MntH; InterPro IPR023056: IPR001046; KEGG: dge:Dgeo_0709 manganese transport protein MntH; PFAM: Natural resistance-associated macrophage protein; SPTR: NRAMP family Mn2+/Fe2+ transporter; TIGRFAM: Natural resistance-associated macrophage protein; PFAM: Natural resistance-associated macrophage protein; TIGRFAM: NRAMP (natural resistance-associated macrophage protein) metal ion transporters YP_004171862.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: dra:DR_0798 acetyltransferase, PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Acetyltransferase, ; PFAM: Acetyltransferase (GNAT) family YP_004171863.1 COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR004176: IPR003959: IPR013093: IPR019489: IPR 003593; KEGG: dge:Dgeo_1475 ATPase AAA-2; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATPase AAA-2; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA) YP_004171864.1 COGs: COG2127 conserved hypothetical protein; HAMAP: ATP-dependent Clp protease adaptor protein ClpS; InterPro IPR022935: IPR003769; KEGG: ddr:Deide_08500 ATP-dependent Clp protease adaptor protein ClpS; PFAM: Adaptor protein ClpS, core; SPTR: ATP-dependent Clp protease adapter protein ClpS; PFAM: ATP-dependent Clp protease adaptor protein ClpS YP_004171865.1 KEGG: eay:EAM_1071 hypothetical protein; SPTR: uncharacterized protein YP_004171866.1 COGs: COG2013 conserved hypothetical protein; InterPro IPR002838; KEGG: dra:DR_2216 hypothetical protein; PFAM: Protein of unknown function DUF124; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF124 YP_004171868.1 KEGG: chl:Chy400_1360 DNA gyrase, A subunit; SPTR: DNA gyrase, A subunit YP_004171869.1 COGs: COG0297 Glycogen synthase; HAMAP: Glycogen/starch synthases, ADP-glucose type; InterPro IPR011835: IPR013534: IPR001296; KEGG: dge:Dgeo_1988 glycogen/starch synthases, ADP-glucose type; PFAM: Starch synthase, catalytic domain; Glycosyl transferase, group 1; PRIAM: Starch synthase; SPTR: Glycogen synthase; TIGRFAM: Glycogen/starch synthases, ADP-glucose type; PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type YP_004171870.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dge:Dgeo_1989 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold; PFAM: Thioesterase domain YP_004171871.1 KEGG: ttj:TTHA1737 hypothetical protein; SPTR: uncharacterized protein TTHA1737 YP_004171872.1 COGs: COG0565 rRNA methylase; InterPro IPR001537: IPR004384; KEGG: ddr:Deide_17410 tRNA/rRNA methyltransferase; PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: tRNA/rRNA methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 1; PFAM: SpoU rRNA Methylase family; TIGRFAM: RNA methyltransferase, TrmH family, group 1 YP_004171873.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003018: IPR011712: IPR003594; KEGG: dge:Dgeo_1992 multi-sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; GAF; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; GAF; SPTR: Multi-sensor signal transduction histidine kinase; PFAM: histidine kinase; GAF domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004171874.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160: IPR003018: IPR006674; KEGG: ddr:Deide_3p00240 metal dependent phosphohydrolase; PFAM: Diguanylate cyclase, predicted; GAF; Metal-dependent phosphohydrolase, HD subdomain; SMART: Diguanylate cyclase, predicted; GAF; SPTR: metal dependent phosphohydrolase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: HD domain; GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004171875.1 COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269: IPR004653; KEGG: dge:Dgeo_1996 tRNA-dihydrouridine synthase A; PFAM: tRNA-dihydrouridine synthase; SPTR: tRNA-dihydrouridine synthase; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, YjbN; manually curated; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: tRNA dihydrouridine synthase A YP_004171876.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR010259: IPR000209; KEGG: dge:Dgeo_0978 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Proteinase inhibitor I9, subtilisin propeptide; PRIAM: Aqualysin 1; SPTR: Peptidase S8 and S53, subtilisin, kexin, sedolisin; PFAM: Peptidase inhibitor I9; Subtilase family YP_004171877.1 COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: dge:Dgeo_1994 peptidase M42; PFAM: Peptidase M42; PRIAM: Cellulase; SPTR: Peptidase M42; PFAM: M42 glutamyl aminopeptidase YP_004171878.1 COGs: COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; InterPro IPR007474; KEGG: dra:DR_0228 ApaG; PFAM: ApaG domain; SPTR: Protein ApaG; PFAM: Protein of unknown function (DUF525) YP_004171879.1 COGs: COG1427 periplasmic solute-binding protein; InterPro IPR003773; KEGG: dra:DR_0370 hypothetical protein; PFAM: Protein of unknown function DUF178; SPTR: uncharacterized protein; PFAM: periplasminc binding protein (DUF178) YP_004171880.1 COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR007197: IPR022432: IPR020050; KEGG: dge:Dgeo_2097 hypothetical protein; PFAM: Radical SAM; SPTR: Thiamine biosynthesis enzyme ThiH, Radical SAM superfamily enzyme; TIGRFAM: Menaquinone biosynthesis, SCO4494, predicted; FO synthase, subunit 2; PFAM: Radical SAM superfamily; TIGRFAM: menaquinone biosynthesis protein, SCO4494 family; radical SAM domain protein, CofH subfamily YP_004171881.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR003018: IPR000160; KEGG: sti:Sthe_0405 diguanylate cyclase and metal dependent phosphohydrolase; PFAM: Diguanylate cyclase, predicted; GAF; SMART: Diguanylate cyclase, predicted; GAF; SPTR: Diguanylate cyclase and metal dependent phosphohydrolase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004171882.1 COGs: COG3832 conserved hypothetical protein; InterPro IPR013538; KEGG: ddr:Deide_14740 hypothetical protein; PFAM: Activator of Hsp90 ATPase homologue 1-like; SPTR: uncharacterized protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein YP_004171883.1 COGs: COG2262 GTPase; InterPro IPR002917: IPR016496; KEGG: ddr:Deide_19040 GTP-binding protein, HflX subfamily; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding protein, HflX subfamily; TIGRFAM: GTP-binding protein, HflX; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX YP_004171884.1 KEGG: dra:DR_2229 hypothetical protein; SPTR: uncharacterized protein YP_004171885.1 KEGG: dge:Dgeo_0382 hypothetical protein; SPTR: ABC-type transport system, permease component YP_004171886.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: dge:Dgeo_0381 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC-type transport system, ATPase component; PFAM: ABC transporter YP_004171887.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR023210; KEGG: dge:Dgeo_0379 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase family; TIGRFAM: voltage-dependent potassium channel beta subunit, animal YP_004171888.1 InterPro IPR011701; KEGG: ddr:Deide_17980 major facilitator superfamily MFS-1; membrane protein; PFAM: Major facilitator superfamily MFS-1; SPTR: major facilitator superfamily MFS-1; membrane protein; PFAM: Bacterial protein of unknown function (DUF894) YP_004171889.1 KEGG: ddr:Deide_17971 hypothetical protein; SPTR: uncharacterized protein YP_004171890.1 COGs: COG0471 Di- and tricarboxylate transporter; InterPro IPR004680: IPR006037; KEGG: dra:DR_1411 sodium/sulfate symporter family protein; PFAM: Regulator of K+ conductance, C-terminal; Divalent ion symporter; SPTR: Transporter, sodium/sulfate symporter family; PFAM: Citrate transporter; TrkA-C domain YP_004171891.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933: IPR010175; KEGG: dge:Dgeo_1391 acetyl-lysine deacetylase; PFAM: Peptidase M20; SPTR: N-acetyl-ornithine/N-acetyl-lysine deacetylase; TIGRFAM: N-acetyl-ornithine/N-acetyl-lysine deacetylase; PFAM: Peptidase family M20/M25/M40; TIGRFAM: N-acetyl-ornithine/N-acetyl-lysine deacetylase YP_004171892.1 InterPro IPR007492; KEGG: dge:Dgeo_1392 hypothetical protein; PFAM: LytTr, DNA-binding domain; SPTR: uncharacterized protein YP_004171893.1 COGs: COG4585 Signal transduction histidine kinase; InterProIPR003018: IPR013656: IPR011712: IPR003594: IPR 000014; KEGG: ddr:Deide_06290 histidine kinase, classic; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; GAF; PAS fold-4; SMART: GAF; SPTR: histidine kinase, classic; TIGRFAM: PAS; PFAM: histidine kinase; GAF domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box YP_004171894.1 KEGG: tth:TTC1472 hypothetical protein; SPTR: uncharacterized protein YP_004171895.1 KEGG: dge:Dgeo_1289 hypothetical protein; SPTR: uncharacterized protein YP_004171896.1 COGs: COG4549 conserved hypothetical protein; InterPro IPR012533; KEGG: ddr:Deide_3p01280 hypothetical protein; PFAM: GLE1, N-terminal, bacteria; SPTR: uncharacterized protein; PFAM: Domain of unkown function (DUF1775) YP_004171897.1 COGs: COG2717 membrane protein; InterPro IPR013130; KEGG: gvi:gll0409 hypothetical protein; PFAM: Flavoprotein transmembrane component; SPTR: Gll0409 protein; PFAM: Ferric reductase like transmembrane component YP_004171898.1 KEGG: gvi:glr1982 hypothetical protein; SPTR: Glr1982 protein YP_004171899.1 COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667: IPR003156; KEGG: dge:Dgeo_1290 phosphoesterase, RecJ-like protein; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: Phosphoesterase, RecJ-like protein; PFAM: DHH family; DHHA1 domain YP_004171900.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR001808; KEGG: dge:Dgeo_1419 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; SPTR: Transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain YP_004171901.1 COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: dge:Dgeo_1420 histone deacetylase superfamily protein; PFAM: histone deacetylase superfamily; PRIAM: histone deacetylase; SPTR: histone deacetylase superfamily; PFAM: histone deacetylase domain YP_004171902.1 KEGG: rlg:Rleg_6963 hypothetical protein; SPTR: Inner membrane protein yhjD YP_004171903.1 COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR000760; KEGG: ddr:Deide_16730 inositol-phosphate phosphatase; PFAM: Inositol monophosphatase; PRIAM: Inositol-phosphate phosphatase; SPTR: inositol-phosphate phosphatase; PFAM: Inositol monophosphatase family YP_004171904.1 COGs: COG0015 Adenylosuccinate lyase; InterPro IPR022761: IPR019468: IPR004769; KEGG: ddr:Deide_16710 adenylosuccinate lyase (adenylosuccinase); PFAM: Lyase 1, N-terminal; Adenylosuccinate lyase C-terminal metazoa/fungi; SPTR: adenylosuccinate lyase (Adenylosuccinase); TIGRFAM: Adenylosuccinate lyase; PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase YP_004171905.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: hoh:Hoch_5837 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: uncharacterized protein; PFAM: Methyltransferase domain YP_004171906.1 COGs: COG1950 membrane protein; InterPro IPR007165; KEGG: dge:Dgeo_0671 membrane protein of unknown function; PFAM: Membrane protein of unknown function; SPTR: uncharacterized protein; PFAM: Membrane protein of unknown function YP_004171907.1 COGs: COG0414 Panthothenate synthetase; HAMAP: Pantoate-beta-alanine ligase; InterPro IPR003721: IPR004821; KEGG: dge:Dgeo_0670 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; SPTR: Pantothenate synthetase; TIGRFAM: Pantoate-beta-alanine ligase; Cytidyltransferase-related; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; cytidyltransferase-related domain YP_004171908.1 COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482: IPR006321: IPR003593; KEGG: ddr:Deide_07650 twitching mobility protein; PFAM: Type II secretion system protein E; SMART: ATPase, AAA+ type, core; SPTR: Twitching mobility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT YP_004171909.1 COGs: COG2326 conserved hypothetical protein; InterPro IPR022488: IPR022300; KEGG: dge:Dgeo_2247 hypothetical protein; PFAM: Polyphosphate kinase-2-related; SPTR: Predicted deoxynucleoside kinase; TIGRFAM: Polyphosphate:nucleotide phosphotransferase, PPK2; PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate:nucleotide phosphotransferase, PPK2 family YP_004171910.1 COGs: COG2872 metal-dependent hydrolase related to alanyl-tRNA synthetase HxxxH domain; InterPro IPR018164: IPR012947: IPR003156; KEGG: dge:Dgeo_1201 threonyl/alanyl tRNA synthetase, SAD; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; SMART: Threonyl/alanyl tRNA synthetase, SAD; SPTR: Threonyl/alanyl tRNA synthetase, SAD; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A) YP_004171911.1 COGs: COG1214 Inactive homolog of metal-dependent protease molecular chaperone; InterPro IPR000905: IPR022496; KEGG: dge:Dgeo_1525 peptidase M22, glycoprotease; PFAM: Peptidase M22, glycoprotease; SPTR: Peptidase M22, glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: Glycoprotease family; TIGRFAM: universal bacterial protein YeaZ YP_004171912.1 InterPro IPR005074; KEGG: dge:Dgeo_1490 peptidase C39, bacteriocin processing; PFAM: Peptidase C39, bacteriocin processing; SPTR: Peptidase C39; PFAM: Peptidase C39 family YP_004171913.1 KEGG: mrb:Mrub_0654 hypothetical protein; SPTR: uncharacterized protein YP_004171914.1 InterPro IPR012902; KEGG: tra:Trad_1311 pilus assembly protein; SPTR: pilus assembly protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004171915.1 InterPro IPR012902; KEGG: msv:Mesil_2369 pilin, type IV; SPTR: pilin, type IV; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004171916.1 InterPro IPR012902; KEGG: dra:DR_1234 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004171917.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140: IPR003439: IPR003593; KEGG: dra:DR_A0349 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter; ABC transporter transmembrane region; TIGRFAM: ABC transporter, permease/ATP-binding protein YP_004171919.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094: IPR004113; KEGG: sus:Acid_4485 FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; PRIAM: D-lactate dehydrogenase (cytochrome); SPTR: FAD linked oxidase domain protein; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain YP_004171920.1 InterPro IPR019759: IPR000223; KEGG: dra:DR_1737 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type YP_004171921.1 KEGG: dra:DR_1738 hypothetical protein; SPTR: uncharacterized protein YP_004171922.1 COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: ddr:Deide_15420 transcriptional regulator, PadR-like family; PFAM: Transcription regulator PadR N-terminal-like; SPTR: transcriptional regulator, PadR-like family; PFAM: Transcriptional regulator PadR-like family YP_004171923.1 InterPro IPR007055: IPR018392: IPR014004: IPR002482; KEGG: dra:DR_0888 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; Transport-associated; SMART: Peptidoglycan-binding Lysin subgroup; Transport-associated and nodulation domain, bacteria; SPTR: Uncharacterized protein DR_0888; PFAM: phospholipid-binding domain; LysM domain YP_004171924.1 COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: sti:Sthe_2576 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase family YP_004171925.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659: IPR001375; KEGG: dge:Dgeo_0365 peptidase S9, prolyl oligopeptidase active site region; SPTR: A/b hydrolase superfamily protease and regulatory beta propeller domain; PFAM: Prolyl oligopeptidase family; WD40-like Beta Propeller Repeat YP_004171926.1 COGs: COG1515 Deoxyinosine 3'endonuclease (endonuclease V); KEGG: dra:DR_2162 hypothetical protein; SPTR: endonuclease V (Deoxyinosine 3endonuclease); manually curated; PFAM: Endonuclease V YP_004171927.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: rru:Rru_A1654 response regulator receiver domain-containing protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver domain protein (CheY); PFAM: Response regulator receiver domain YP_004171928.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR003018: IPR003661: IPR003594; KEGG: ddr:Deide_3p02470 histidine kinase, classic; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; SPTR: histidine kinase, classic; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phosphoacceptor) domain YP_004171929.1 COGs: COG5322 dehydrogenase; HAMAP: Glycerol-3-phosphate acyltransferase, bacteria; InterPro IPR003811: IPR006151; KEGG: dge:Dgeo_1012 hypothetical protein; PFAM: Glycerol-3-phosphate acyltransferase, bacteria; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; SPTR: Membrane domain and Glutamyl-tRNAGlu reductase-like NAD(P) binding domain; PFAM: Domain of unknown function (DUF205); shikimate / quinate 5-dehydrogenase; TIGRFAM: acyl-phosphate glycerol 3-phosphate acyltransferase YP_004171930.1 COGs: COG0503 Adenine/guanine phosphoribosyltransferase and related PRPP-binding protein; InterPro IPR000836; KEGG: dge:Dgeo_1550 adenine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; SPTR: Phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain YP_004171931.1 COGs: COG0503 Adenine/guanine phosphoribosyltransferase and related PRPP-binding protein; InterPro IPR000836; KEGG: dge:Dgeo_0847 phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; SPTR: Phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain YP_004171932.1 KEGG: dra:DR_1139 hypothetical protein; SPTR: uncharacterized protein; PFAM: Inorganic pyrophosphatase YP_004171933.1 KEGG: dge:Dgeo_0837 hypothetical protein; SPTR: uncharacterized protein YP_004171934.1 COGs: COG1385 conserved hypothetical protein; InterPro IPR006700; KEGG: dge:Dgeo_0838 16S ribosomal RNA methyltransferase RsmE; PFAM: ribosomal RNA small subunit methyltransferase E; SPTR: uncharacterized protein; TIGRFAM: ribosomal RNA small subunit methyltransferase E; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family YP_004171935.1 COGs: COG2264 ribosomal protein L11 methylase; HAMAP: ribosomal protein L11 methyltransferase; InterPro IPR004498: IPR010456; KEGG: dge:Dgeo_0839 ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase, PrmA; SPTR: ribosomal protein L11 methyltransferase; PFAM: ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase YP_004171936.1 COGs: COG2206 HD-GYP domain; InterPro IPR003018: IPR006674: IPR006675: IPR003607; KEGG: mrb:Mrub_2643 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; GAF; SMART: Metal-dependent phosphohydrolase, HD domain; GAF; SPTR: Metal dependent phosphohydrolase; TIGRFAM: Uncharacterised protein family HDIG; PFAM: HD domain; GAF domain; TIGRFAM: uncharacterized domain HDIG YP_004171937.1 COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR004455: IPR000304; KEGG: dra:DR_1522 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; PRIAM: Pyrroline-5-carboxylate reductase; SPTR: Pyrroline-5-carboxylate reductase; TIGRFAM: Pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase YP_004171938.1 KEGG: mrb:Mrub_1346 hypothetical protein; SPTR: uncharacterized protein YP_004171939.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dge:Dgeo_1041 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, family 2; PFAM: Glycosyl transferase family 2 YP_004171940.1 InterPro IPR015141; KEGG: ddr:Deide_3p00391 phospholipase A2, precursor; PFAM: Phospholipase A2, prokaryotic/fungal; SPTR: phospholipase A2,; PFAM: Prokaryotic phospholipase A2 YP_004171941.1 COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR008915: IPR001478; KEGG: dra:DR_1507 hypothetical protein; PFAM: Peptidase M50; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: zinc metalloprotease DR_1507; PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP YP_004171942.1 COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR003821: IPR013512: IPR013644; KEGG: dra:DR_1508 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_004171943.1 COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: dge:Dgeo_1045 phosphatidate cytidylyltransferase; PFAM: Phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase family YP_004171944.1 COGs: COG0233 ribosome recycling factor; HAMAP: ribosome recycling factor, bacterial-like; InterPro IPR015998: IPR002661; KEGG: dge:Dgeo_1046 ribosome recycling factor; PFAM: ribosome recycling factor; SPTR: ribosome-recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; TIGRFAM: ribosome recycling factor YP_004171945.1 COGs: COG0528 Uridylate kinase; InterPro IPR001048: IPR015963; KEGG: dra:DR_1511 uridylate kinase; PFAM: Aspartate/glutamate/uridylate kinase; SPTR: Uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase YP_004171946.1 COGs: COG0264 Translation elongation factor Ts; HAMAP: Translation elongation factor EFTs/EF1B; InterPro IPR001816: IPR000449: IPR014039; KEGG: dge:Dgeo_1048 elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; SPTR: Elongation factor Ts; TIGRFAM: Translation elongation factor EFTs/EF1B; PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts YP_004171947.1 COGs: COG0052 ribosomal protein S2; InterPro IPR001865: IPR005706; KEGG: dge:Dgeo_1049 30S ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type YP_004171948.1 InterPro IPR001440: IPR013105: IPR019734; KEGG: dge:Dgeo_0829 tetratricopeptide TPR_2; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_2; PFAM: Tetratricopeptide repeat YP_004171949.1 COGs: COG0237 Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; InterPro IPR001977; KEGG: dge:Dgeo_0828 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; PRIAM: Dephospho-CoA kinase; SPTR: Dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase YP_004171950.1 COGs: COG0180 tryptophanyl-tRNA synthetase; InterPro IPR002305: IPR002306; KEGG: dge:Dgeo_0450 tryptophanyl-tRNA synthetase II; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: tryptophan--tRNA ligase; SPTR: tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase, class Ib; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase YP_004171951.1 COGs: COG0504 CTP synthase (UTP-ammonia lyase); HAMAP: CTP synthase; InterPro IPR004468: IPR017456: IPR000991; KEGG: dge:Dgeo_0827 CTP synthetase; PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: CTP synthase; SPTR: CTP synthase; TIGRFAM: CTP synthase; PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase YP_004171952.1 KEGG: dra:DR_1985 beta-lactamase, SPTR: Beta-lactamase, ; PFAM: Beta-lactamase YP_004171953.1 COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165: IPR012792; KEGG: cwo:Cwoe_2127 3-oxoacid CoA-transferase, A subunit; PFAM: Coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SMART: Coenzyme A transferase; SPTR: 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit YP_004171954.1 COGs: COG0782 Transcription elongation factor; HAMAP: Transcription elongation factor greA; InterPro IPR022691: IPR001437: IPR006359; KEGG: dge:Dgeo_0668 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB, N-terminal; Transcription elongation factor, GreA/GreB, C-terminal; SPTR: Transcription elongation factor GreA; TIGRFAM: Transcription elongation factor GreA; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA YP_004171955.1 COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; InterPro IPR004165: IPR012791; KEGG: svi:Svir_07040 butyryl-CoA:acetate CoA transferase; PFAM: Coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SMART: Coenzyme A transferase; SPTR: Butyryl-CoA:acetate CoA transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit YP_004171956.1 COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; HAMAP: tRNA-specific 2-thiouridylase; InterPro IPR004506; KEGG: ddr:Deide_12840 tRNA-specific 2-thiouridylase MnmA; PFAM: tRNA-specific 2-thiouridylase; SPTR: tRNA-specific 2-thiouridylase mnmA; TIGRFAM: tRNA-specific 2-thiouridylase; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_004171958.1 COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR022644: IPR022643: IPR002986; KEGG: dge:Dgeo_0790 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal; PRIAM: Diaminopimelate decarboxylase; SPTR: Diaminopimelate decarboxylase; TIGRFAM: Diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase YP_004171959.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: ddr:Deide_2p00070 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family YP_004171960.1 COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125; KEGG: pgn:PGN_0389 cytidine/deoxycytidylate deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; PRIAM: Guanine deaminase; SPTR: Guanine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_004171961.1 KEGG: kvu:EIO_0944 Na+/H+ antiporter NhaA; SPTR: Na(+)/H(+) antiporter nhaA YP_004171962.1 InterPro IPR011466; KEGG: ddr:Deide_08930 hypothetical protein; PFAM: Protein of unknown function DUF1572; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1572) YP_004171963.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439: IPR003593; KEGG: dra:DR_0475 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein, EF-3 family; PFAM: ABC transporter YP_004171964.1 KEGG: ade:Adeh_1223 membrane protein; SPTR: transmembrane efflux protein YP_004171965.1 KEGG: oaa:100077321 similar to IQ motif containing with AAA domain; SPTR: Phosphate/phosphonate ABC transport system permease YP_004171966.1 KEGG: pbr:PB2503_09974 hypothetical protein YP_004171967.1 COGs: COG0501 Zn-dependent protease with chaperone function; InterPro IPR001915; KEGG: sfu:Sfum_1032 peptidase M48, Ste24p; PFAM: Peptidase M48; SPTR: Peptidase M48, Ste24p; PFAM: Peptidase family M48 YP_004171968.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005: IPR018060; KEGG: dge:Dgeo_2329 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004171969.1 COGs: COG3698 periplasmic protein; InterPro IPR018711; KEGG: dge:Dgeo_1911 periplasmic protein-like protein; PFAM: Phosphodiester alpha-GlcNAcase; SPTR: Periplasmic YigE-like protein; PFAM: Predicted periplasmic protein (DUF2233) YP_004171970.1 COGs: COG1505 Serine protease of the peptidase family S9A; InterPro IPR004106: IPR001375; KEGG: dra:DR_2503 prolyl endopeptidase; PFAM: Peptidase S9A, oligopeptidase, N-terminal beta-propeller; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Prolyl oligopeptidase; SPTR: Prolyl endopeptidase; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase family YP_004171971.1 COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: dge:Dgeo_0773 peptidylprolyl isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_004171972.1 COGs: COG2008 Threonine aldolase; InterPro IPR001597; KEGG: ddr:Deide_09290 threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase; PRIAM: Threonine aldolase; SPTR: Threonine aldolase; PFAM: Beta-eliminating lyase YP_004171973.1 COGs: COG3663 G:T/U mismatch-specific DNA glycosylase; InterPro IPR005122; KEGG: dge:Dgeo_1718 uracil-DNA glycosylase superfamily protein; PFAM: uracil-DNA glycosylase-like; SPTR: uracil-DNA glycosylase superfamily; PFAM: uracil DNA glycosylase superfamily YP_004171974.1 KEGG: cpw:CPC735_026970 hypothetical protein; SPTR: uncharacterized protein YP_004171975.1 COGs: COG0344 membrane protein; HAMAP: Glycerol-3-phosphate acyltransferase, bacteria; InterPro IPR003811; KEGG: ddr:Deide_15720 membrane protein; PFAM: Glycerol-3-phosphate acyltransferase, bacteria; SPTR: Glycerol-3-phosphate acyltransferase 2; TIGRFAM: Glycerol-3-phosphate acyltransferase, bacteria; PFAM: Domain of unknown function (DUF205); TIGRFAM: acyl-phosphate glycerol 3-phosphate acyltransferase YP_004171976.1 COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterPro IPR000534: IPR012280: IPR005986; KEGG: ddr:Deide_15740 aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH); PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding; PRIAM: Aspartate-semialdehyde dehydrogenase; SMART: Semialdehyde dehydrogenase, NAD-binding; SPTR: Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH); TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) YP_004171977.1 COGs: COG0442 Prolyl-tRNA synthetase; InterPro IPR002314: IPR004154: IPR004500; KEGG: syw:SYNW1771 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; PRIAM: Proline--tRNA ligase; SPTR: Prolyl-tRNA synthetase; TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family II YP_004171978.1 InterPro IPR004843; KEGG: ddr:Deide_23350 serine-threonine phosphatase; PFAM: Metallo-dependent phosphatase; PRIAM: Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical); SPTR: Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_004171979.1 InterPro IPR000834; KEGG: hch:HCH_04864 carboxypeptidase; PFAM: Peptidase M14, carboxypeptidase A; PRIAM: Carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A; SPTR: Predicted carboxypeptidase; PFAM: Zinc carboxypeptidase YP_004171980.1 COGs: COG0078 Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; InterPro IPR002292: IPR006132: IPR006131; KEGG: dge:Dgeo_1605 ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; PRIAM: Ornithine carbamoyltransferase; SPTR: Ornithine carbamoyltransferase; TIGRFAM: Ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase YP_004171981.1 COGs: COG4104 conserved hypothetical protein; InterPro IPR008727; KEGG: ddr:Deide_06800 hypothetical protein; PFAM: PAAR motif; SPTR: uncharacterized protein; PFAM: PAAR motif YP_004171982.1 COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase, type 2; InterPro IPR010136: IPR000534; KEGG: dge:Dgeo_1604 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SMART: Semialdehyde dehydrogenase, NAD-binding; SPTR: N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, type 2; PFAM: Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form YP_004171983.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: ddr:Deide_1p00760 chloride peroxidase; PFAM: Alpha/beta hydrolase fold-1; SPTR: chloride peroxidase; PFAM: alpha/beta hydrolase fold YP_004171984.1 COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: bvi:Bcep1808_2427 Na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: Na+/solute symporter; PFAM: Sodium:solute symporter family YP_004171985.1 KEGG: bgf:BC1003_1007 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3311) YP_004171986.1 COGs: COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase); HAMAP: Arginine biosynthesis protein ArgJ; InterPro IPR002813; KEGG: ddr:Deide_10200 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase; PFAM: Arginine biosynthesis protein ArgJ; PRIAM: Amino-acid N-acetyltransferase; SPTR: Arginine biosynthesis bifunction; TIGRFAM: Arginine biosynthesis protein ArgJ; PFAM: ArgJ family; TIGRFAM: glutamate N-acetyltransferase/amino-acid acetyltransferase YP_004171987.1 KEGG: dge:Dgeo_0741 hypothetical protein; SPTR: uncharacterized protein YP_004171988.1 KEGG: dra:DR_1763 hypothetical protein; SPTR: uncharacterized protein YP_004171989.1 KEGG: ddr:Deide_14670 conserved hypothetical protein, precursor; SPTR: uncharacterized protein YP_004171990.1 KEGG: rop:ROP_08850 drug resistance efflux protein; SPTR: drug resistance efflux protein YP_004171991.1 KEGG: ddr:Deide_20150 hypothetical protein; SPTR: uncharacterized protein; PFAM: Mycothiol maleylpyruvate isomerase N-terminal domain YP_004171992.1 KEGG: cwo:Cwoe_0971 drug resistance transporter, EmrB/QacA subfamily; SPTR: Integral membrane protein YP_004171993.1 COGs: COG0459 Chaperonin GroEL (HSP60 family); HAMAP: Chaperonin Cpn60; InterPro IPR001844: IPR002423; KEGG: dra:DR_0607 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1; SPTR: 60 kDa chaperonin; TIGRFAM: Chaperonin Cpn60; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL YP_004171994.1 COGs: COG0234 Co-chaperonin GroES (HSP10); HAMAP: Chaperonin Cpn10; InterPro IPR020818; KEGG: ddr:Deide_22580 co-chaperonin GroES; PFAM: Chaperonin Cpn10; SMART: Chaperonin Cpn10; SPTR: 10 kDa chaperonin; PFAM: Chaperonin 10 Kd subunit YP_004171995.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: dge:Dgeo_2229 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004171996.1 COGs: COG4295 conserved hypothetical protein; InterPro IPR019261: IPR012664; KEGG: dra:DR_B0099 hypothetical protein; PFAM: Protein of unknown function DUF2263; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02452; PFAM: Uncharacterized protein conserved in bacteria (DUF2263); TIGRFAM: conserved hypothetical protein TIGR02452 YP_004171997.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: ddr:Deide_22520 acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004171998.1 KEGG: ddr:Deide_17781 hypothetical protein; SPTR: uncharacterized protein YP_004171999.1 COGs: COG0728 membrane protein virulence factor; InterPro IPR004268; KEGG: dge:Dgeo_2003 integral membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN; SPTR: Integral membrane protein MviN; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN YP_004172000.1 KEGG: cai:Caci_2157 ErfK/YbiS/YcfS/YnhG family protein; SPTR: uncharacterized protein YP_004172001.1 COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: dge:Dgeo_2002 hypothetical protein; PFAM: Domain of unknown function DUF218; SPTR: uncharacterized protein; PFAM: DUF218 domain YP_004172002.1 COGs: COG0550 Topoisomerase IA; InterProIPR006171: IPR013497: IPR005733: IPR003601: IPR 003602; KEGG: dge:Dgeo_2001 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial-type; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial YP_004172003.1 KEGG: dge:Dgeo_2000 hypothetical protein; SPTR: uncharacterized protein YP_004172004.1 COGs: COG0326 Molecular chaperone HSP90 family; InterPro IPR003594; KEGG: mxa:MXAN_1393 HSP90 family protein; PFAM: ATPase-like, ATP-binding domain; SPTR: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004172005.1 KEGG: ppm:PPSC2_c0373 hypothetical protein; SPTR: uncharacterized protein YP_004172006.1 KEGG: dra:DR_0578 hypothetical protein; SPTR: uncharacterized protein YP_004172007.1 KEGG: dge:Dgeo_0453 hypothetical protein; SPTR: uncharacterized protein YP_004172008.1 KEGG: dge:Dgeo_1146 hypothetical protein; SPTR: Protein containing PATAN domain YP_004172009.1 COGs: COG0063 sugar kinase; InterPro IPR004443: IPR000631; KEGG: dge:Dgeo_1145 YjeF-related protein-like protein; PFAM: YjeF-related protein, N-terminal; Uncharacterised protein family, carbohydrate kinase-related; SPTR: YjeF-related protein, sugar kinase of the RbsK family; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; PFAM: YjeF-related protein N-terminus; Carbohydrate kinase; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related; yjeF N-terminal region YP_004172010.1 InterPro IPR013105: IPR001440: IPR019734; KEGG: ddr:Deide_10480 tetratricopeptide repeat domain protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: tetratricopeptide repeat domain protein YP_004172011.1 COGs: COG1329 Transcriptional regulators similar to M. xanthus CarD; InterPro IPR003711; KEGG: tra:Trad_2545 transcriptional regulator, CarD family; PFAM: Transcription factor CarD; SPTR: Transcriptional regulator, CarD family; PFAM: CarD-like/TRCF domain YP_004172012.1 COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); HAMAP: ribosomal RNA adenine dimethylase; InterPro IPR011530: IPR001737: IPR020598; KEGG: ddr:Deide_10490 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase, N-terminal; SPTR: ribosomal RNA small subunit methyltransferase A; TIGRFAM: ribosomal RNA adenine dimethylase; PFAM: ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase YP_004172013.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: dge:Dgeo_1142 PfkB; PFAM: Carbohydrate/purine kinase; SPTR: Fructokinase RbsK; PFAM: pfkB family carbohydrate kinase YP_004172014.1 COGs: COG1825 ribosomal protein L25 (general stress protein Ctc); HAMAP: ribosomal protein L25, long-form; InterPro IPR001021: IPR020055; KEGG: dge:Dgeo_0469 50S ribosomal protein L25/general stress protein Ctc; PFAM: ribosomal protein L25, short-form; SPTR: 50S ribosomal protein L25; TIGRFAM: ribosomal protein L25, long-form; PFAM: ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form YP_004172015.1 COGs: COG4291 membrane protein; InterPro IPR009781; KEGG: ske:Sked_35040 predicted membrane protein; PFAM: Protein of unknown function DUF1345; SPTR: Predicted membrane protein; PFAM: Protein of unknown function (DUF1345) YP_004172016.1 COGs: COG0442 Prolyl-tRNA synthetase; HAMAP: Prolyl-tRNA synthetase, class IIa, eukaryotic-type; InterPro IPR004499: IPR002314: IPR004154: IPR016061; KEGG: dge:Dgeo_0570 prolyl-tRNA synthetase; PFAM: Anticodon-binding; Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Prolyl-tRNA synthetase, class II, C-terminal; PRIAM: Proline--tRNA ligase; SMART: Prolyl-tRNA synthetase, class II, C-terminal; SPTR: Prolyl-tRNA synthetase; TIGRFAM: Prolyl-tRNA synthetase, class IIa, eukaryotic-type; PFAM: Anticodon binding domain; Protein of unknown function (DUF1676); tRNA synthetase class II core domain (G, H, P, S and T); Prolyl-tRNA synthetase, C-terminal; TIGRFAM: prolyl-tRNA synthetase, family I YP_004172017.1 InterPro IPR018684; KEGG: dge:Dgeo_0571 hypothetical protein; PFAM: Protein of unknown function DUF2171; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2171) YP_004172018.1 InterPro IPR011020; KEGG: scl:sce1047 hypothetical protein; SMART: HTTM; SPTR: uncharacterized protein YP_004172019.1 KEGG: cpi:Cpin_0069 hypothetical protein; SPTR: uncharacterized protein YP_004172020.1 KEGG: ckp:ckrop_0299 glycine cleavage system aminomethyltransferase T; SPTR: Aminomethyltransferase YP_004172021.1 KEGG: ami:Amir_3602 cyclic nucleotide-binding protein; SPTR: Cyclic nucleotide-binding protein YP_004172022.1 COGs: COG3899 ATPase; InterPro IPR005158; KEGG: msv:Mesil_0215 transcriptional activator domain protein; PFAM: Bacterial transcriptional activator domain; SPTR: Transcriptional activator domain protein; PFAM: Bacterial transcriptional activator domain YP_004172023.1 COGs: COG0366 Glycosidase; InterPro IPR006047: IPR006589; KEGG: dge:Dgeo_0572 alpha amylase, catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic domain; PRIAM: Amylosucrase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Alpha amylase, catalytic region; PFAM: Alpha amylase, catalytic domain YP_004172024.1 InterPro IPR004843; KEGG: dge:Dgeo_0217 metallophosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_004172025.1 KEGG: dge:Dgeo_0218 hypothetical protein; SPTR: uncharacterized protein YP_004172026.1 KEGG: ddr:Deide_12422 hypothetical protein; SPTR: uncharacterized protein YP_004172027.1 COGs: COG3224 conserved hypothetical protein; InterPro IPR007138; KEGG: ddr:Deide_03730 hypothetical protein; PFAM: Antibiotic biosynthesis monooxygenase; SPTR: uncharacterized protein; PFAM: Antibiotic biosynthesis monooxygenase YP_004172028.1 InterPro IPR007837; KEGG: dge:Dgeo_2100 DinB; PFAM: DinB; SPTR: DinB/YfiT family protein; PFAM: DinB family YP_004172029.1 COGs: COG3695 methylated DNA-protein cysteine methyltransferase; InterPro IPR014048; KEGG: tra:Trad_2403 methylated-DNA/protein-cysteinemethyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; SPTR:Methylated-DNA/protein-cysteinemethyltransfera se; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase YP_004172030.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: hor:Hore_04900 extracellular solute-binding protein family 5; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: Extracellular solute-binding protein family 5; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_004172031.1 COGs: COG0054 riboflavin synthase beta-chain; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; InterPro IPR002180; KEGG: ddr:Deide_02240 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; SPTR: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_004172032.1 COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; riboflavin biosynthesis protein RibBA; InterPro IPR000422: IPR000926: IPR016299; KEGG: dge:Dgeo_0302 GTP cyclohydrolase II; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; SPTR: riboflavin biosynthesis protein ribBA; TIGRFAM: GTP cyclohydrolase II, RibA; 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_004172033.1 COGs: COG0307 riboflavin synthase alpha chain; InterPro IPR001783; KEGG: ddr:Deide_02260 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein; PRIAM: riboflavin synthase; SPTR: riboflavin synthase alpha chain; TIGRFAM: Lumazine-binding protein; PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit YP_004172034.1 COGs: COG0117 Pyrimidine deaminase; InterPro IPR002125: IPR002734: IPR004794: IPR011549; KEGG: dge:Dgeo_0300 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding; PRIAM: Diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase; SPTR: riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; riboflavin-specific deaminase, C-terminal; manually curated; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD YP_004172035.1 COGs: COG1523 Type II secretory pathway pullulanase PulA and related glycosidase; InterProIPR005323: IPR004193: IPR006047: IPR011839: IPR 006589; KEGG: ddr:Deide_15110 pullulanase precursor (alpha-dextrin endo-1,6-alpha-glucosidase)(pullulan 6-glucanohydrolase); PFAM: Bacterial pullanase-associated protein; Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Pullulanase (Alpha-dextrin endo-1,6-alpha-glucosidase)(Pullulan 6-glucanohydrolase); TIGRFAM: Alpha-1,6-glucosidases, pullulanase-type; PFAM: Domain of unknown function (DUF3372); Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Bacterial pullanase-associated domain; TIGRFAM: alpha-1,6-glucosidases, pullulanase-type YP_004172036.1 KEGG: rsq:Rsph17025_1663 flagellar hook-associated protein FlgK; SPTR: Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) YP_004172037.1 KEGG: spu:583688 forkhead transcription factor G; SPTR: FoxG YP_004172038.1 KEGG: dge:Dgeo_1478 hypothetical protein; SPTR: uncharacterized protein YP_004172039.1 COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: rop:ROP_72000 MFS transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: MFS transporter; PFAM: Major Facilitator Superfamily YP_004172040.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149: IPR020843; KEGG: ddr:Deide_09640 NADPH:quinone reductase (quinone oxidoreductase); PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SMART: Polyketide synthase, enoylreductase; SPTR: NADPH:quinone reductase (Quinone oxidoreductase); PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_004172041.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: dge:Dgeo_0953 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; PFAM: Beta-lactamase YP_004172042.1 COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR001509: IPR005886; KEGG: ddr:Deide_01370 UDP-glucose 4-epimerase, (galactowaldenase), (UDP-galactose 4-epimerase); PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucose 4-epimerase; SPTR: UDP-glucose 4-epimerase, (Galactowaldenase), (UDP-galactose 4-epimerase); TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase YP_004172043.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843: IPR001761; KEGG: dge:Dgeo_2243 LacI family transcription regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family YP_004172044.1 InterPro IPR011701; KEGG: ddr:Deide_01350 major facilitator superfamily; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily; PFAM: Major Facilitator Superfamily YP_004172045.1 COGs: COG4200 conserved hypothetical protein; KEGG: cdl:CDR20291_0422 lantibiotic ABC transporter, permease; SPTR: ABC superfamily ATP binding cassette transporter permease subunit YP_004172046.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: mmr:Mmar10_1823 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter; PFAM: ABC transporter YP_004172047.1 COGs: COG2409 drug exporter of the RND superfamily; InterPro IPR004869; KEGG: ddr:Deide_21640 hypothetical protein; PFAM: Membrane transport protein, MMPL type; SPTR: uncharacterized protein; PFAM: MMPL family YP_004172048.1 COGs: COG4339 conserved hypothetical protein; KEGG: ddr:Deide_01020 hypothetical protein; SPTR: uncharacterized protein YP_004172049.1 COGs: COG1394 H+-ATPase subunit D; HAMAP: ATPase, V1/A1 complex, subunit D; InterPro IPR002699; KEGG: ddr:Deide_01010 V-type ATP synthase subunit D, V-type ATPase subunit D; PFAM: ATPase, V1/A1 complex, subunit D; SPTR: V-type ATP synthase subunit D; TIGRFAM: ATPase, V1/A1 complex, subunit D; PFAM: ATP synthase subunit D; TIGRFAM: H(+)-transporting ATP synthase, vacuolar type, subunit D YP_004172050.1 COGs: COG1156 H+-ATPase subunit B; HAMAP: V-type ATP synthase regulatory subunit B/beta; InterPro IPR004100: IPR000194: IPR000793: IPR022879; KEGG: ddr:Deide_01000 V-type ATP synthase subunit B; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SPTR: V-type ATP synthase beta chain; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain YP_004172051.1 COGs: COG1155 H+-ATPase subunit A; HAMAP: V-type ATP synthase catalytic subunit A/alpha; InterPro IPR004100: IPR000194: IPR000793: IPR022878; KEGG: dra:DR_0700 V-type ATP synthase subunit A; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SPTR: V-type ATP synthase alpha chain; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain YP_004172052.1 COGs: COG1436 H+-ATPase subunit F; InterPro IPR008218; KEGG: dra:DR_0699 v-type ATP synthase, F subunit; PFAM: ATPase, V1/A1 complex, subunit F; SPTR: V-type ATP synthase, F subunit; PFAM: ATP synthase (F/14-kDa) subunit YP_004172053.1 COGs: COG1527 H+-ATPase subunit C; HAMAP: ATPase, A1 complex, subunit C; InterPro IPR002843: IPR014272; KEGG: dge:Dgeo_2049 H+-transporting two-sector ATPase, C (AC39) subunit; PFAM: ATPase, V0/A0 complex, subunit C/D; SPTR: V-type ATP synthase subunit C; PFAM: ATP synthase (C/AC39) subunit YP_004172054.1 COGs: COG1390 H+-ATPase subunit E; HAMAP: ATPase, V1/A1 complex, subunit E; InterPro IPR002842; KEGG: ddr:Deide_00960 V-type ATP synthase subunit; PFAM: ATPase, V1/A1 complex, subunit E; SPTR: V-type proton ATPase subunit E; PFAM: ATP synthase (E/31 kDa) subunit YP_004172055.1 InterPro IPR002379; KEGG: ddr:Deide_00950 H+-transporting two-sector ATPase, C subunit; PFAM: ATPase, F0/V0 complex, subunit C; SPTR: H+-transporting two-sector ATPase, C subunit; PFAM: ATP synthase subunit C YP_004172056.1 COGs: COG1269 H+-ATPase subunit I; InterPro IPR002490; KEGG: dge:Dgeo_2052 V-type ATPase, 116 kDa subunit; PFAM: ATPase, V0/A0 complex, 116kDa subunit; SPTR: V-type H+-ATPase subunit I; PFAM: V-type ATPase 116kDa subunit family YP_004172057.1 KEGG: dra:DR_0694 hypothetical protein; SPTR: uncharacterized protein YP_004172058.1 COGs: COG0004 Ammonia permease; InterPro IPR001905; KEGG: dge:Dgeo_2054 ammonium transporter; PFAM: Ammonium transporter; SPTR: Ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter YP_004172059.1 COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187; KEGG: ddr:Deide_13511 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII; SPTR: Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II YP_004172060.1 KEGG: ddr:Deide_00900 hypothetical protein; SPTR: uncharacterized protein YP_004172061.1 COGs: COG0193 Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; InterPro IPR001328; KEGG: dra:DR_2372 peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase YP_004172062.1 KEGG: dra:DR_2373 hypothetical protein; SPTR: uncharacterized protein YP_004172063.1 InterPro IPR018987; KEGG: dge:Dgeo_1073 hypothetical protein; PFAM: Protein of unknown function DUF1999; SPTR: Acetyltransferase, GNAT family; PFAM: Protein of unknown function (DUF1999) YP_004172064.1 KEGG: dra:DR_1479 hypothetical protein; SPTR: uncharacterized protein YP_004172065.1 COGs: COG1550 conserved hypothetical protein; InterPro IPR007546; KEGG: ddr:Deide_08420 hypothetical protein; PFAM: Protein of unknown function DUF503; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF503) YP_004172066.1 InterPro IPR019759: IPR000223; KEGG: dra:DR_1427 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S26; Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type YP_004172067.1 COGs: COG0515 Serine/threonine protein kinase; InterPro IPR017442: IPR002290; KEGG: ddr:Deide_08440 non-specific serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; SPTR: Non-specific serine/threonine protein kinase; PFAM: Protein kinase domain YP_004172068.1 KEGG: dge:Dgeo_0295 hypothetical protein; SPTR: Single-stranded DNA-binding protein DdrB YP_004172069.1 COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; HAMAP: SAICAR synthetase; InterPro IPR001636; KEGG: dge:Dgeo_0067 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: Phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: SAICAR synthetase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase YP_004172070.1 COGs: COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase PurS component; InterPro IPR003850; KEGG: dra:DR_0224 hypothetical protein; PFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit; SPTR: uncharacterized protein; TIGRFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit; PFAM: Phosphoribosylformylglycinamidine (FGAM) synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS protein YP_004172071.1 COGs: COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase glutamine amidotransferase domain; HAMAP: Phosphoribosylformylglycinamidine synthase I; InterPro IPR011698: IPR010075; KEGG: ddr:Deide_21300 phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ-like glutamine amidotransferase; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: phosphoribosylformylglycinamidine synthase I (FGAM synthase I, formylglycinamide ribotide amidotransferase); TIGRFAM: Phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: phosphoribosylformylglycinamidine synthase I YP_004172072.1 KEGG: dan:Dana_GF16685 GF16685 gene product from transcript GF16685-RA; SPTR: GF16685 YP_004172073.1 COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; HAMAP: Phosphoribosylformylglycinamidine synthase II; InterPro IPR000728: IPR010918: IPR010074; KEGG: ddr:Deide_21320 phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase 2; TIGRFAM: Phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase II YP_004172074.1 COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR000583: IPR000836: IPR005854; KEGG: dra:DR_0220 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase; PRIAM: Amidophosphoribosyltransferase; SPTR: Amidophosphoribosyltransferase; TIGRFAM: Amidophosphoribosyl transferase; PFAM: Phosphoribosyl transferase domain; Glutamine amidotransferases class-II; TIGRFAM: amidophosphoribosyltransferase YP_004172075.1 COGs: COG1877 Trehalose-6-phosphatase; InterPro IPR003337: IPR006379; KEGG: dge:Dgeo_0060 HAD family hydrolase; PFAM: Trehalose-phosphatase; SPTR: OtsB, Trehalose-6-phosphate phosphatase, HAD-superfamily hydrolase subfamily IIB; TIGRFAM: Trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Trehalose-phosphatase; TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB YP_004172076.1 COGs: COG0380 Trehalose-6-phosphate synthase; InterPro IPR001830; KEGG: dge:Dgeo_0059 alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: Glycosyl transferase, family 20; PRIAM: Alpha,alpha-trehalose-phosphate synthase (UDP-forming); SPTR: OtsA, Trehalose-6-phosphate synthase; PFAM: Glycosyltransferase family 20; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming] YP_004172077.1 COGs: COG4895 conserved hypothetical protein; InterPro IPR019240; KEGG: dra:DR_2561 hypothetical protein; PFAM: Protein of unknown function DUF2196; SPTR: uncharacterized protein; TIGRFAM: Protein of unknown function DUF2196; manually curated; PFAM: Uncharacterized conserved protein (DUF2196); TIGRFAM: conserved hypothetical protein YP_004172078.1 KEGG: ctp:CTRG_05420 hypothetical protein; SPTR: Predicted protein YP_004172079.1 KEGG: dra:DR_2560 hypothetical protein; SPTR: uncharacterized protein YP_004172080.1 COGs: COG2823 periplasmic or secreted lipoprotein; InterPro IPR007055: IPR014004; KEGG: dra:DR_0392 hypothetical protein; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria; SPTR: uncharacterized protein; PFAM: phospholipid-binding domain YP_004172081.1 COGs: COG1482 Phosphomannose isomerase; InterPro IPR001250; KEGG: dge:Dgeo_0321 mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type I; PRIAM: mannose-6-phosphate isomerase; SPTR: mannose-6-phosphate isomerase; PFAM: Phosphomannose isomerase type I; TIGRFAM: mannose-6-phosphate isomerase, class I YP_004172082.1 COGs: COG1628 conserved hypothetical protein; HAMAP: Protein of unknown function DUF99; InterPro IPR002802; KEGG: dge:Dgeo_1005 hypothetical protein; PFAM: Protein of unknown function DUF99; SPTR: Endonuclease V related, DUF99; PFAM: Protein of unknown function DUF99 YP_004172083.1 COGs: COG0567 2-oxoglutarate dehydrogenase complex dehydrogenase (E1); InterPro IPR001017: IPR005475: IPR011603; KEGG: dge:Dgeo_0140 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; PRIAM: Oxoglutarate dehydrogenase (succinyl-transferring); SMART: Transketolase-like, pyrimidine-binding domain; SPTR: 2-oxoglutarate dehydrogenase, E1 component; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; PFAM: Dehydrogenase E1 component; Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component YP_004172084.1 COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR000089: IPR004167: IPR001078: IPR006255; KEGG: ddr:Deide_21440 dihydrolipoyllysine-residue succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; PRIAM: Dihydrolipoyllysine-residue succinyltransferase; SPTR: dihydrolipoyllysine-residue succinyltransferase; TIGRFAM: Dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) YP_004172085.1 COGs: COG5504 Zn-dependent protease; InterPro IPR018728; KEGG: ddr:Deide_20870 hypothetical protein; PFAM: Protein of unknown function DUF2268, Zn-dependent protease-related; SPTR: uncharacterized protein; PFAM: Predicted Zn-dependent protease (DUF2268) YP_004172086.1 COGs: COG0461 Orotate phosphoribosyltransferase; InterPro IPR000836: IPR006273; KEGG: dge:Dgeo_0138 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase; SPTR: Orotate phosphoribosyltransferase; TIGRFAM: Orotate phosphoribosyltransferase, Thermus type; PFAM: Phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase, Thermus family; orotate phosphoribosyltransferase YP_004172087.1 COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR013027: IPR004099: IPR006258; KEGG: ddr:Deide_20540 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: Dihydrolipoyl dehydrogenase; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase YP_004172088.1 COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835: IPR005908; KEGG: dra:DR_A0031 glucose-1-phosphate thymidylyltransferase, PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase, ; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, short form; manually curated; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylylransferase, long form YP_004172089.1 KEGG: dge:Dgeo_0322 hypothetical protein; SPTR: uncharacterized protein YP_004172090.1 COGs: COG2896 Molybdenum cofactor biosynthesis protein; InterPro IPR007197: IPR010505: IPR013483: IPR006638; KEGG: dge:Dgeo_1762 molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM; Molybdenum cofactor synthesis C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Molybdenum cofactor biosynthesis protein A; TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum Cofactor Synthesis C; Radical SAM superfamily; TIGRFAM: molybdenum cofactor biosynthesis protein A, bacterial YP_004172091.1 COGs: COG2188 Transcriptional regulators; InterPro IPR000524: IPR011663; KEGG: ddr:Deide_05930 transcriptional regulator, PhnF family; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SPTR: transcriptional regulator, PhnF family; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain YP_004172092.1 InterPro IPR001647; KEGG: dra:DR_1402 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional repressor, TetR family; PFAM: Bacterial regulatory proteins, tetR family YP_004172093.1 COGs: COG2074 2-phosphoglycerate kinase; KEGG: dge:Dgeo_1765 2-phosphoglycerate kinase; SPTR: 2-phosphoglycerate kinase YP_004172094.1 KEGG: ddr:Deide_07070 NUDIX hydrolase; SPTR: NUDIX hydrolase YP_004172095.1 COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148: IPR006037; KEGG: ddr:Deide_03820 trk system potassium uptake protein TrkA; PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; SPTR: trk system potassium uptake protein trkA; PFAM: TrkA-N domain; TrkA-C domain YP_004172096.1 COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445: IPR004772; KEGG: dge:Dgeo_1583 K+ transporter trk; PFAM: Cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: K+ transporter Trk; TIGRFAM: Potassium uptake protein TrkH; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family YP_004172097.1 COGs: COG0116 N6-adenine-specific DNA methylase; InterPro IPR000241; KEGG: ddr:Deide_03840 N6-adenine-specific DNA methylase; RNA methylase; PFAM: RNA methylase; SPTR: N6-adenine-specific DNA methylase; RNA methylase; PFAM: RNA methylase family UPF0020 YP_004172098.1 COGs: COG1826 Sec-independent protein secretion pathway components; HAMAP: Twin-arginine translocation protein TatA/E; InterPro IPR003369: IPR006312; KEGG: dra:DR_0292 hypothetical protein; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106; SPTR: uncharacterized protein; TIGRFAM: Twin-arginine translocation protein TatA/E; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family; twin arginine-targeting protein translocase TatB YP_004172099.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR007630: IPR014284; KEGG: dge:Dgeo_0606 ECF subfamily RNA polymerase sigma-24 factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004172100.1 InterPro IPR018764; KEGG: ddr:Deide_07533 anti-sigmaE protein; PFAM: Anti-sigma K factor RskA; SPTR: uncharacterized protein; PFAM: Anti-sigma-K factor rskA YP_004172101.1 COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: ddr:Deide_06630 polyphosphate--glucose phosphotransferase; PFAM: ROK; PRIAM: Polyphosphate--glucose phosphotransferase; SPTR: polyphosphate--glucose phosphotransferase; PFAM: ROK family YP_004172102.1 COGs: COG0292 ribosomal protein L20; HAMAP: ribosomal protein L20; InterPro IPR005813; KEGG: dge:Dgeo_0574 50S ribosomal protein L20; PFAM: ribosomal protein L20; SPTR: 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; TIGRFAM: ribosomal protein L20 YP_004172103.1 HAMAP: ribosomal protein L35, non-mitochondrial; InterPro IPR021137: IPR001706; KEGG: ddr:Deide_05910 50S ribosomal protein L35; PFAM: ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35, non-mitochondrial; PFAM: ribosomal protein L35; TIGRFAM: ribosomal protein L35 YP_004172104.1 COGs: COG0290 Translation initiation factor 3 (IF-3); HAMAP: Translation initiation factor 3; InterPro IPR019814: IPR019815: IPR001288; KEGG: dra:DR_2087 translation initiation factor IF-3; PFAM: Translation initiation factor 3, N-terminal; Translation initiation factor 3, C-terminal; SPTR: Translation initiation factor IF-3; TIGRFAM: Translation initiation factor 3; PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3 YP_004172105.1 COGs: COG3408 Glycogen debranching protein; InterPro IPR010401; KEGG: ddr:Deide_06370 glycogen debranching enzyme; PFAM: Amylo-alpha-1,6-glucosidase; PRIAM: 4-alpha-glucanotransferase; SPTR: glycogen debranching enzyme; PFAM: Amylo-alpha-1,6-glucosidase; Glycogen debranching enzyme N terminal; TIGRFAM: glycogen debranching enzyme, archaeal type YP_004172106.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: dge:Dgeo_1510 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; PFAM: NUDIX domain YP_004172107.1 COGs: COG1801 conserved hypothetical protein; InterPro IPR002763; KEGG: ddr:Deide_16580 hypothetical protein; PFAM: Protein of unknown function DUF72; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF72 YP_004172108.1 SPTR: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein YP_004172109.1 COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; HAMAP: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; InterPro IPR000583: IPR001347: IPR005855; KEGG: ddr:Deide_21520 glucosamine--fructose-6-phosphate aminotransferase; PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS); PRIAM: Glutamine--fructose-6-phosphate transaminase (isomerizing); SPTR: glutamine--fructose-6-phosphate transaminase (Isomerizing); TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing) YP_004172110.1 KEGG: msv:Mesil_0402 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein required for attachment to host cells YP_004172111.1 COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: msv:Mesil_1247 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase family YP_004172112.1 COGs: COG2331 conserved hypothetical protein; InterPro IPR013429; KEGG: ddr:Deide_21540 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Regulatory protein, FmdB, TIGRFAM: regulatory protein, FmdB family YP_004172113.1 COGs: COG0265 trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478; KEGG: dge:Dgeo_0103 peptidase S1 and S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF; SPTR: Peptidase S1 and S6, chymotrypsin/Hap; PFAM: trypsin YP_004172114.1 KEGG: ure:UREG_03862 hypothetical protein; SPTR: Predicted protein YP_004172115.1 COGs: COG1428 Deoxynucleoside kinase; InterPro IPR002624; KEGG: ddr:Deide_21560 deoxyguanosine kinase (deoxynucleoside kinase complex I F-component); PFAM: Deoxynucleoside kinase; SPTR: Deoxyguanosine kinase (Deoxynucleoside kinase complex I F-component); PFAM: Deoxynucleoside kinase YP_004172116.1 COGs: COG1428 Deoxynucleoside kinase; InterPro IPR001977: IPR002624; KEGG: dge:Dgeo_0101 deoxynucleoside kinase; PFAM: Deoxynucleoside kinase; Dephospho-CoA kinase; PRIAM: Deoxyadenosine kinase; SPTR: Deoxynucleoside kinase; PFAM: Deoxynucleoside kinase YP_004172117.1 InterPro IPR001450; KEGG: dge:Dgeo_2212 4Fe-4S ferredoxin, iron-sulfur binding; PFAM: 4Fe-4S binding domain; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding; PFAM: 4Fe-4S binding domain YP_004172118.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: dge:Dgeo_0780 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; SPTR: Transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain YP_004172119.1 COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; HAMAP:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-di aminopimelateligase; InterPro IPR000713: IPR013221: IPR004101: IPR005761; KEGG: dge:Dgeo_0099 UDP-N-acetylmuramyl-tripeptide synthetases; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase; SPTR: UDP-N-acetylmuramyl-tripeptide synthetase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelateligase; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase YP_004172120.1 InterPro IPR006016; KEGG: ddr:Deide_3p00273 universal stress family protein; PFAM: UspA; SPTR: universal stress family protein; PFAM: Universal stress protein family YP_004172121.1 COGs: COG0662 mannose-6-phosphate isomerase; InterPro IPR013096; KEGG: ctu:Ctu_29910 hypothetical protein; PFAM: Cupin 2, conserved barrel; SPTR: uncharacterized protein; PFAM: Cupin domain YP_004172122.1 COGs: COG0366 Glycosidase; InterPro IPR006047: IPR013739: IPR006589; KEGG: dge:Dgeo_0672 alpha amylase, catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic domain; Beta-galactosidase C-terminal; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Alpha amylase, catalytic region; PFAM: Alpha amylase, catalytic domain YP_004172123.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789: IPR000792; KEGG: dge:Dgeo_2486 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004172124.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712: IPR003594; KEGG: dge:Dgeo_2487 periplasmic sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; SPTR: Periplasmic sensor signal transduction histidine kinase; PFAM: histidine kinase; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004172125.1 KEGG: bcg:BCG9842_B2630 hypothetical protein; SPTR: uncharacterized protein YP_004172126.1 KEGG: dge:Dgeo_2488 integral membrane protein; SPTR: Integral membrane protein YP_004172127.1 COGs: COG0029 Aspartate oxidase; InterPro IPR003953: IPR004112; KEGG: ddr:Deide_13550 L-aspartate oxidase (quinolinate synthetase B); PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; PRIAM: L-aspartate oxidase; SPTR: L-aspartate oxidase (Quinolinate synthetase B); PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase YP_004172128.1 COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR022412: IPR002638: IPR004393; KEGG: ddr:Deide_13560 nicotinate-nucleotide diphosphorylase, carboxylating (nicotinate-nucleotide pyrophosphorylase, carboxylating)(quinolinate phosphoribosyltransferase, decarboxylating); PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: Nicotinate-nucleotide diphosphorylase, carboxylating (Nicotinate-nucleotide pyrophosphorylase, carboxylating)(Quinolinate phosphoribosyltransferase, decarboxylating); TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase YP_004172129.1 COGs: COG0379 Quinolinate synthase; HAMAP: Quinolinate synthase A, type 2; InterPro IPR003473: IPR023066; KEGG: dge:Dgeo_1164 quinolinate synthetase; PFAM: Quinolinate synthetase A; PRIAM: Quinolinate synthase; SPTR: Quinolinate synthase A; TIGRFAM: Quinolinate synthetase A; PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit YP_004172130.1 SPTR: Nitrogen regulation protein NtrY YP_004172131.1 KEGG: hau:Haur_2568 hypothetical protein; SPTR: uncharacterized protein YP_004172132.1 KEGG: pai:PAE2923 hypothetical protein; SPTR: Type IV secretion system protein B4 YP_004172133.1 InterPro IPR001387; KEGG: dge:Dgeo_1366 prophage repressor; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: ORF36; PFAM: Helix-turn-helix YP_004172134.1 InterPro IPR019759; KEGG: ddr:Deide_01180 LexA repressor; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: LexA repressor; PFAM: Peptidase S24-like YP_004172135.1 COGs: COG0288 Carbonic anhydrase; InterPro IPR001765; KEGG: ddr:Deide_01220 carbonic anhydrase; PFAM: Carbonic anhydrase; SMART: Carbonic anhydrase; SPTR: Carbonic anhydrase; PFAM: Carbonic anhydrase YP_004172136.1 COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: dra:DR_1839 peptidyl-prolyl cis-trans isomerase, FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; PRIAM: Peptidylprolyl isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_004172137.1 KEGG: axy:AXYL_04674 dolichyl-phosphate-mannose-protein mannosyltransferase 3; SPTR: PepSY-associated TM helix domain protein YP_004172138.1 COGs: COG1649 conserved hypothetical protein; InterPro IPR003790; KEGG: dge:Dgeo_2134 hypothetical protein; PFAM: Protein of unknown function DUF187; SPTR: uncharacterized protein; PFAM: Uncharacterised BCR, COG1649 YP_004172139.1 COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; InterPro IPR001453: IPR008136: IPR008135; KEGG: dge:Dgeo_2136 competence-damaged protein; PFAM: Molybdopterin binding; CinA, C-terminal; SMART: Molybdopterin binding; SPTR: CinA-like protein; TIGRFAM: Competence-induced protein CinA; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain YP_004172140.1 COGs: COG1514 2'-5' RNA ligase; InterPro IPR014051: IPR004175; KEGG: dge:Dgeo_2137 2',5' RNA ligase; PFAM: Phosphoesterase, HXTX; SPTR: 2',5' RNA ligase; TIGRFAM: 2',5' RNA ligase; PFAM: 2',5' RNA ligase family; TIGRFAM: 2'-5' RNA ligase YP_004172141.1 COGs: COG0468 RecA/RadA recombinase; HAMAP: DNA recombination and repair protein RecA; InterPro IPR013765: IPR003593; KEGG: dra:DR_2340 recombinase A; PFAM: DNA recombination and repair protein RecA; SMART: ATPase, AAA+ type, core; SPTR: Protein recA; TIGRFAM: DNA recombination and repair protein RecA; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA YP_004172142.1 COGs: COG1418 HD superfamily hydrolase; HAMAP: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; InterProIPR018111: IPR006674: IPR017705: IPR006675: IPR 004087: IPR003607; KEGG: dge:Dgeo_0162 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD subdomain; K homology, type 1, subgroup; SMART: Metal-dependent phosphohydrolase, HD domain; K homology; SPTR: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; TIGRFAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Uncharacterised protein family HDIG; PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG YP_004172143.1 KEGG: dge:Dgeo_0465 hypothetical protein; SPTR: uncharacterized protein YP_004172144.1 COGs: COG0793 Periplasmic protease; InterPro IPR005151: IPR001478; KEGG: dge:Dgeo_0277 peptidase S41; PFAM: Peptidase S41; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Peptidase S41; PFAM: Peptidase family S41; TIGRFAM: C-terminal peptidase (prc) YP_004172145.1 COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dge:Dgeo_2124 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: ABC-type dipeptide transport system, permease component, DppC; PFAM: Binding-protein-dependent transport system inner membrane component YP_004172146.1 COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: tra:Trad_2911 binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component YP_004172147.1 COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: kcr:Kcr_1093 ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_004172148.1 COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; HAMAP: D-alanine--D-alanine ligase; InterPro IPR011127: IPR011095: IPR005905; KEGG: dra:DR_0362 D-alanyl-alanine synthetase A; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; PRIAM: D-alanine--D-alanine ligase; SPTR: D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: D-ala D-ala ligase C-terminus; D-ala D-ala ligase N-terminus; TIGRFAM: D-alanine--D-alanine ligase YP_004172149.1 KEGG: dge:Dgeo_2142 hypothetical protein; SPTR: uncharacterized protein YP_004172150.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; HAMAP: UbiE/COQ5 methyltransferase; InterPro IPR004033; KEGG: ddr:Deide_22750 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; SPTR: Menaquinone biosynthesis methyltransferase ubiE; TIGRFAM: UbiE/COQ5 methyltransferase; PFAM: ubiE/COQ5 methyltransferase family; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases YP_004172151.1 COGs: COG2897 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: ddr:Deide_22970 sulfurtransferases (thiosulfate, 3-mercaptopyruvate); PFAM: Rhodanese-like; PRIAM: 3-mercaptopyruvate sulfurtransferase; SMART: Rhodanese-like; SPTR: Sulfurtransferases (Thiosulfate, 3-mercaptopyruvate); PFAM: Rhodanese-like domain YP_004172152.1 COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; InterPro IPR002218; KEGG: dra:DR_1681 GidA-related protein; PFAM: Glucose-inhibited division protein A-related; SPTR: GidA-related protein; PFAM: Glucose inhibited division protein A YP_004172153.1 COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; HAMAP: tRNA (guanine-N-7) methyltransferase; InterPro IPR003358; KEGG: dge:Dgeo_2090 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase; PRIAM: tRNA (guanine-N(7)-)-methyltransferase; SPTR: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase YP_004172154.1 KEGG: hch:HCH_05151 hypothetical protein; SPTR: uncharacterized protein YP_004172155.1 KEGG: hch:HCH_00133 hypothetical protein; SPTR: uncharacterized protein YP_004172156.1 COGs: COG2313 Uncharacterized protein involved in pigment biosynthesis; HAMAP: Pseudouridine-5'-phosphate glycosidase; InterPro IPR007342; KEGG: dra:DR_2311 hypothetical protein; PFAM: Pseudouridine-5'-phosphate glycosidase; SPTR: Pseudouridine-5'-phosphate glycosidase; PFAM: Indigoidine synthase A like protein YP_004172157.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: dge:Dgeo_0358 PfkB; PFAM: Carbohydrate/purine kinase; SPTR: RbsK family ribokinase, containing DNA-binding HTH domain; PFAM: pfkB family carbohydrate kinase YP_004172158.1 COGs: COG2301 Citrate lyase beta subunit; InterPro IPR005000; KEGG: dge:Dgeo_0359 citryl-CoA lyase; PFAM: Aldehyde-lyase domain; PRIAM: Citryl-CoA lyase; SPTR: Citryl-CoA lyase; PFAM: HpcH/HpaI aldolase/citrate lyase family YP_004172159.1 COGs: COG1718 Serine/threonine protein kinase involved in cell cycle control; InterPro IPR018934: IPR000687; KEGG: dge:Dgeo_0361 protein of unknown function RIO1; PFAM: RIO-like kinase; SMART: RIO kinase; SPTR: uncharacterized protein; PFAM: RIO1 family YP_004172160.1 COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; InterPro IPR015168; KEGG: dge:Dgeo_0363 sulfonate/nitrate/taurine transport system substrate-binding protein; SPTR: sulfonate/nitrate/taurine transport system substrate-binding protein; PFAM: NMT1/THI5 like YP_004172161.1 COGs: COG0219 rRNA methylase (SpoU class); InterPro IPR001537; KEGG: ddr:Deide_02610 tRNA/rRNA methyltransferase YibK; PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: tRNA/rRNA methyltransferase yibK; PFAM: SpoU rRNA Methylase family; TIGRFAM: rRNA methylase, , group 2 YP_004172162.1 COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; InterPro IPR003526; KEGG: dge:Dgeo_0073 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; PRIAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; SPTR: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; PFAM: YgbB family; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_004172163.1 COGs: COG2862 membrane protein; InterPro IPR005134; KEGG: ddr:Deide_1p00580 hypothetical protein; PFAM: Uncharacterised protein family UPF0114; SPTR: uncharacterized protein; PFAM: Uncharacterized protein family, UPF0114 YP_004172164.1 KEGG: dra:DR_0051 HesB/YadR/YfhF family protein; SPTR: HesB/YadR/YfhF family protein YP_004172165.1 KEGG: dge:Dgeo_0226 TM2; SPTR: TM2 domain-containing membrane protein; PFAM: TM2 domain YP_004172166.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: dge:Dgeo_1681 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8, subtilisin-like protein; PFAM: Subtilase family YP_004172167.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: dge:Dgeo_1188 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8 and S53, subtilisin, kexin, sedolisin; PFAM: Subtilase family YP_004172168.1 COGs: COG2389 Uncharacterized metal-binding protein; InterPro IPR019250; KEGG: dge:Dgeo_1187 hypothetical protein; PFAM: Protein of unknown function DUF2227, metal-binding; SPTR: Predicted membrane-bound metal-dependent hydrolase; PFAM: Uncharacterized metal-binding protein (DUF2227) YP_004172169.1 InterPro IPR018649; KEGG: msv:Mesil_0741 protein of unknown function DUF2078, membrane; PFAM: Protein of unknown function DUF2078, membrane; SPTR: uncharacterized protein; PFAM: Predicted membrane protein (DUF2078) YP_004172170.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: msv:Mesil_0738 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004172171.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660: IPR003661: IPR003594; KEGG: msv:Mesil_0737 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Integral membrane sensor signal transduction histidine kinase; PFAM: HAMP domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004172172.1 InterPro IPR013216; KEGG: dge:Dgeo_1186 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: Methyltransferase domain YP_004172173.1 COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: dge:Dgeo_1185 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; PFAM: Polysaccharide deacetylase YP_004172174.1 COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; InterPro IPR009695: IPR007235; KEGG: dge:Dgeo_1184 monogalactosyldiacylglycerol synthase; PFAM: monogalactosyldiacylglycerol synthase; Glycosyl transferase, family 28, C-terminal; SPTR: monogalactosyldiacylglycerol synthase; PFAM: Glycosyltransferase family 28 C-terminal domain; monogalactosyldiacylglycerol (MGDG) synthase YP_004172175.1 COGs: COG0795 permease; InterPro IPR005495; KEGG: dge:Dgeo_1183 permease YjgP/YjgQ; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Permease YjgP/YjgQ; PFAM: Predicted permease YjgP/YjgQ family YP_004172176.1 COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; HAMAP: Beta-hydroxyacyl-ACP dehydratase FabZ; InterPro IPR013114: IPR010084; KEGG: dge:Dgeo_1182 (3R)-hydroxymyristoyl-ACP dehydratase; PFAM: Beta-hydroxyacyl-ACP dehydratase, FabA/FabZ; SPTR: (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: Beta-hydroxyacyl-ACP dehydratase FabZ; PFAM: FabA-like domain; TIGRFAM: beta-hydroxyacyl-ACP dehydratase FabZ YP_004172177.1 COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: ddr:Deide_10570 rod shape-determining protein MreB; PFAM: Cell shape determining protein MreB/Mrl; SPTR: Rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family YP_004172178.1 KEGG: ddr:Deide_10571 conserved hypothetical protein, precursor; SPTR: uncharacterized protein YP_004172179.1 KEGG: pde:Pden_2378 RNA methylase; SPTR: uncharacterized protein YP_004172180.1 KEGG: dra:DR_1256 hypothetical protein; SPTR: uncharacterized protein YP_004172181.1 InterPro IPR011701; KEGG: fre:Franean1_1216 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: major facilitator superfamily (MFS) transporter; PFAM: Major Facilitator Superfamily YP_004172182.1 KEGG: rcu:RCOM_0798460 hypothetical protein; SPTR: uncharacterized protein YP_004172183.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701: IPR012902; KEGG: dge:Dgeo_1610 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily YP_004172184.1 KEGG: dge:Dgeo_1611 hypothetical protein; SPTR: Orotate phosphoribosyltransferase related protein YP_004172185.1 COGs: COG1755 conserved hypothetical protein; InterPro IPR007269; KEGG: ddr:Deide_14080 isoprenylcysteine carboxyl methyltransferase; PFAM: isoprenylcysteine carboxyl methyltransferase; SPTR: isoprenylcysteine carboxyl methyltransferase; PFAM: isoprenylcysteine carboxyl methyltransferase (ICMT) family YP_004172186.1 COGs: COG3424 naringenin-chalcone synthase; InterPro IPR001099: IPR012328; KEGG: dra:DR_2091 chalcone synthase, PFAM: Chalcone/stilbene synthase, C-terminal; Chalcone/stilbene synthase, N-terminal; PRIAM: Naringenin-chalcone synthase; SPTR: Chalcone synthase, ; PFAM: Chalcone and stilbene synthases, N-terminal domain; Chalcone and stilbene synthases, C-terminal domain YP_004172187.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: rxy:Rxyl_1060 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004172188.1 COGs: COG0012 GTPase probable translation factor; InterPro IPR002917: IPR013029: IPR004396; KEGG: dra:DR_1386 GTP-dependent nucleic acid-binding protein EngD; PFAM: Domain of unknown function DUF933; GTP-binding protein, HSR1-related; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF YP_004172189.1 COGs: COG4696 conserved hypothetical protein; KEGG: dge:Dgeo_0294 hypothetical protein; SPTR: uncharacterized protein; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase YP_004172190.1 InterPro IPR013096; KEGG: ddr:Deide_21290 cupin domain protein; PFAM: Cupin 2, conserved barrel; SPTR: Cupin domain protein; PFAM: Cupin domain YP_004172191.1 InterPro IPR005079; KEGG: bvu:BVU_1032 choloylglycine hydrolase; PFAM: Peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; SPTR: choloylglycine hydrolase; PFAM: Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase YP_004172192.1 COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: ddr:Deide_21600 hypothetical protein; PFAM: Uncharacterised protein family UPF0027; SPTR: uncharacterized protein; PFAM: Uncharacterized protein family UPF0027 YP_004172193.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR013656: IPR003661: IPR003594; KEGG: dra:DR_1174 sensory box sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Sensory box sensor histidine kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004172194.1 COGs: COG3592 conserved hypothetical protein; InterPro IPR010693: IPR018967: IPR006622; KEGG: sgr:SGR_1561 hypothetical protein; PFAM: Ferredoxin soy-like; Iron sulphur-containing domain, CDGSH-type; SPTR: uncharacterized protein; PFAM: Iron-binding zinc finger CDGSH type; Protein of unknown function (DUF1271) YP_004172195.1 KEGG: scb:SCAB_23731 major facilitator transporter; SPTR: major facilitator transporter YP_004172196.1 HAMAP: metal-dependent hydrolase; KEGG: dra:DR_0841 metal-dependent hydrolase; SPTR: metal-dependent hydrolase DR_0841; PFAM: Mycothiol maleylpyruvate isomerase N-terminal domain YP_004172197.1 COGs: COG1694 pyrophosphatase; InterPro IPR004518; KEGG: dge:Dgeo_1830 MazG nucleotide pyrophosphohydrolase; PFAM: NTP pyrophosphohydrolase MazG, catalytic core; SPTR: MazG nucleotide pyrophosphohydrolase; PFAM: MazG nucleotide pyrophosphohydrolase domain YP_004172198.1 KEGG: dge:Dgeo_1831 hypothetical protein; SPTR: uncharacterized protein YP_004172199.1 COGs: COG0465 ATP-dependent Zn protease; InterProIPR011546: IPR003959: IPR000642: IPR005936: IPR 003593; KEGG: ddr:Deide_18550 cell division protease FtsH, precursor; PFAM: ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; Peptidase M41; PRIAM: Microtubule-severing ATPase; SMART: ATPase, AAA+ type, core; SPTR: cell division protease ftsH,; TIGRFAM: Peptidase M41, FtsH; PFAM: Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH YP_004172200.1 COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: dge:Dgeo_1833 MscS mechanosensitive ion channel; PFAM: Mechanosensitive ion channel MscS; SPTR: MscS Mechanosensitive ion channel; PFAM: Mechanosensitive ion channel YP_004172201.1 COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; HAMAP: Phospholipid biosynthesis protein, PlsX-like; InterPro IPR003664: IPR012281; KEGG: ddr:Deide_18570 glycerol-3-phosphate acyltransferase PlsX; PFAM: Fatty acid synthesis PlsX protein; SPTR: Phosphate acyltransferase; TIGRFAM: Phospholipid biosynthesis protein, PlsX-like; PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX YP_004172202.1 COGs: COG1432 conserved hypothetical protein; InterPro IPR021139; KEGG: ddr:Deide_18580 hypothetical protein; PFAM: Domain of unknown function DUF88; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF88 YP_004172203.1 InterPro IPR005500; KEGG: dge:Dgeo_1836 hypothetical protein; PFAM: Protein of unknown function DUF309; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF309) YP_004172204.1 COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766: IPR005746; KEGG: ddr:Deide_18600 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin YP_004172205.1 COGs: COG3545 esterase of the alpha/beta hydrolase fold; InterPro IPR010662; KEGG: ddr:Deide_18610 hypothetical protein; PFAM: Protein of unknown function DUF1234; SPTR: uncharacterized protein; PFAM: Alpha/Beta hydrolase family of unknown function (DUF1234) YP_004172206.1 COGs: COG0203 ribosomal protein L17; HAMAP: ribosomal protein L17; InterPro IPR000456; KEGG: ddr:Deide_18620 50S ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; TIGRFAM: ribosomal protein L17 YP_004172207.1 COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; HAMAP: DNA-directed RNA polymerase, alpha subunit; InterProIPR011261: IPR011262: IPR011260: IPR011773: IPR 011263; KEGG: dge:Dgeo_1840 DNA-directed RNA polymerase subunit alpha; PFAM: DNA-directed RNA polymerase, insert domain; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal; SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; SPTR: DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type YP_004172208.1 COGs: COG0522 ribosomal protein S4 and related protein; InterPro IPR001912: IPR002942: IPR005709; KEGG: dge:Dgeo_1841 30S ribosomal protein S4; PFAM: RNA-binding S4; ribosomal protein S4/S9, N-terminal; SMART: RNA-binding S4; SPTR: 30S ribosomal protein S4; TIGRFAM: ribosomal protein S4, bacterial-type; PFAM: ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type YP_004172209.1 COGs: COG0100 ribosomal protein S11; InterPro IPR001971: IPR019981; KEGG: dge:Dgeo_1842 30S ribosomal protein S11; PFAM: ribosomal protein S11; SPTR: 30S ribosomal protein S11; TIGRFAM: ribosomal protein S11, bacterial-type; PFAM: ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11 YP_004172210.1 COGs: COG0099 ribosomal protein S13; InterPro IPR001892: IPR019980; KEGG: dge:Dgeo_1843 30S ribosomal protein S13; PFAM: ribosomal protein S13; SPTR: 30S ribosomal protein S13; TIGRFAM: ribosomal protein S13, bacterial-type; PFAM: ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13 YP_004172211.1 HAMAP: ribosomal protein L36; InterPro IPR000473; KEGG: ddr:Deide_18670 50S ribosomal protein L36; PFAM: ribosomal protein L36; SPTR: 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type YP_004172212.1 COGs: COG0361 Translation initiation factor 1 (IF-1); HAMAP: Translation initiation factor IF-1; InterPro IPR006196: IPR004368; KEGG: dge:Dgeo_1845 translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type; SPTR: Translation initiation factor IF-1; TIGRFAM: Translation initiation factor IF-1; PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1 YP_004172213.1 COGs: COG0563 Adenylate kinase and related kinase; HAMAP: Adenylate kinase; InterPro IPR000850: IPR006259; KEGG: dge:Dgeo_1846 adenylate kinase; PFAM: Adenylate kinase; SPTR: Adenylate kinase; TIGRFAM: Adenylate kinase, subfamily; PFAM: Adenylate kinase; TIGRFAM: adenylate kinases YP_004172214.1 COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: dge:Dgeo_1847 preprotein translocase subunit SecY; PFAM: SecY protein; SPTR: Preprotein translocase subunit secY; TIGRFAM: SecY protein; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit YP_004172215.1 COGs: COG0200 ribosomal protein L15; InterPro IPR005749; KEGG: ddr:Deide_18760 50S ribosomal protein L15; SPTR: 50S ribosomal protein L15; TIGRFAM: ribosomal protein L15, bacterial-type; PFAM: ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle YP_004172216.1 InterPro IPR016082: IPR005996; KEGG: dge:Dgeo_1849 50S ribosomal protein L30; PFAM: ribosomal protein L30, ferredoxin-like fold domain; SPTR: 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30, bacterial-type; PFAM: ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle YP_004172217.1 COGs: COG0098 ribosomal protein S5; InterPro IPR013810: IPR005324: IPR005712; KEGG: dge:Dgeo_1850 30S ribosomal protein S5; PFAM: ribosomal protein S5, N-terminal; ribosomal protein S5, C-terminal; SPTR: 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5, bacterial-type; PFAM: ribosomal protein S5, N-terminal domain; ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type YP_004172218.1 COGs: COG0256 ribosomal protein L18; InterPro IPR005484: IPR004389; KEGG: ddr:Deide_18790 50S ribosomal protein L18; PFAM: ribosomal protein L18/L5; SPTR: 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18, bacterial; PFAM: ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type YP_004172219.1 COGs: COG0097 ribosomal protein L6P/L9E; InterPro IPR020040: IPR019906; KEGG: ddr:Deide_18800 50S ribosomal protein L6; PFAM: ribosomal protein L6, alpha-beta domain; SPTR: 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial-type; PFAM: ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type YP_004172220.1 COGs: COG0096 ribosomal protein S8; InterPro IPR000630; KEGG: dge:Dgeo_1853 30S ribosomal protein S8; PFAM: ribosomal protein S8; SPTR: 30S ribosomal protein S8; PFAM: ribosomal protein S8 YP_004172221.1 COGs: COG0199 ribosomal protein S14; HAMAP: ribosomal protein S14, bacterial/plastid; InterPro IPR001209: IPR023036; KEGG: dra:DR_2109 ribosomal protein S14; PFAM: ribosomal protein S14; SPTR: 30S ribosomal protein S14; PFAM: ribosomal protein S14p/S29e YP_004172222.1 COGs: COG0094 ribosomal protein L5; InterPro IPR002132; KEGG: dge:Dgeo_1855 50S ribosomal protein L5; PFAM: ribosomal protein L5; SPTR: 50S ribosomal protein L5; PFAM: ribosomal L5P family C-terminus; ribosomal protein L5 YP_004172223.1 COGs: COG0198 ribosomal protein L24; InterPro IPR005824: IPR003256; KEGG: dge:Dgeo_1856 50S ribosomal protein L24; PFAM: KOW; SMART: KOW; SPTR: 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle YP_004172224.1 COGs: COG0093 ribosomal protein L14; InterPro IPR000218: IPR005745; KEGG: dge:Dgeo_1857 50S ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; SPTR: 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14, bacterial-type; PFAM: ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle YP_004172225.1 COGs: COG0186 ribosomal protein S17; InterPro IPR000266: IPR019984; KEGG: ddr:Deide_18860 30S ribosomal protein S17; PFAM: ribosomal protein S17; SPTR: 30S ribosomal protein S17; TIGRFAM: ribosomal protein S17, bacterial-type; PFAM: ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17 YP_004172226.1 InterPro IPR001854; KEGG: dra:DR_0319 50S ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal L29 protein; TIGRFAM: ribosomal protein L29 YP_004172227.1 COGs: COG0197 ribosomal protein L16/L10E; HAMAP: ribosomal protein L16; InterPro IPR016180: IPR000114; KEGG: dra:DR_0318 50S ribosomal protein L16; PFAM: ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle YP_004172228.1 COGs: COG0092 ribosomal protein S3; InterProIPR008282: IPR004044: IPR001351: IPR005704: IPR 004087; KEGG: dge:Dgeo_1861 30S ribosomal protein S3; PFAM: ribosomal protein S3, C-terminal; ribosomal protein S3, N-terminal; K homology, type 2; SMART: K homology; SPTR: 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3, bacterial; PFAM: KH domain; ribosomal protein S3, C-terminal domain; ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type YP_004172229.1 COGs: COG0091 ribosomal protein L22; InterPro IPR001063: IPR005727; KEGG: dge:Dgeo_1862 50S ribosomal protein L22; PFAM: ribosomal protein L22/L17; SPTR: 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22, bacterial-type; PFAM: ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type YP_004172230.1 COGs: COG0185 ribosomal protein S19; InterPro IPR002222: IPR005732; KEGG: dra:DR_0315 30S ribosomal protein S19; PFAM: ribosomal protein S19/S15; SPTR: 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial-type; PFAM: ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle YP_004172231.1 COGs: COG0090 ribosomal protein L2; InterPro IPR022666: IPR022669: IPR005880; KEGG: dra:DR_0314 50S ribosomal protein L2; PFAM: ribosomal protein L2, C-terminal; ribosomal Proteins L2, RNA binding domain; SPTR: 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2, bacterial-type; PFAM: ribosomal Proteins L2, RNA binding domain; ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar YP_004172232.1 COGs: COG0089 ribosomal protein L23; InterPro IPR013025; KEGG: dra:DR_0313 50S ribosomal protein L23; PFAM: ribosomal protein L25/L23; SPTR: 50S ribosomal protein L23; PFAM: ribosomal protein L23 YP_004172233.1 COGs: COG0088 ribosomal protein L4; InterPro IPR002136; KEGG: dge:Dgeo_1866 50S ribosomal protein L4; PFAM: ribosomal protein L4/L1e; SPTR: 50S ribosomal protein L4; PFAM: ribosomal protein L4/L1 family YP_004172234.1 COGs: COG0087 ribosomal protein L3; InterPro IPR000597: IPR019927; KEGG: ddr:Deide_18950 50S ribosomal protein L3; PFAM: ribosomal protein L3; SPTR: 50S ribosomal protein L3; TIGRFAM: ribosomal protein L3, bacterial/organelle-type; PFAM: ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial YP_004172235.1 COGs: COG0051 ribosomal protein S10; HAMAP: ribosomal protein S10 subgroup; InterPro IPR001848: IPR005731; KEGG: dge:Dgeo_1868 30S ribosomal protein S10; PFAM: ribosomal protein S10; SPTR: 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10 subgroup; PFAM: ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle YP_004172236.1 COGs: COG0050 GTPase - translation elongation factors; InterProIPR000795: IPR004161: IPR004160: IPR004541: IPR 005225; KEGG: ddr:Deide_18970 elongation factor Tu; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal; SPTR: Elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU YP_004172237.1 KEGG: dge:Dgeo_1870 hypothetical protein; SPTR: uncharacterized protein YP_004172238.1 COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795: IPR004161: IPR005517: IPR000640: IPR 004540: IPR005225; KEGG: dge:Dgeo_1871 elongation factor G; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SPTR: Elongation factor G; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_004172239.1 COGs: COG0049 ribosomal protein S7; InterPro IPR000235: IPR005717; KEGG: dra:DR_0306 30S ribosomal protein S7; PFAM: ribosomal protein S7; SPTR: 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7, bacterial-type; PFAM: ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle YP_004172240.1 COGs: COG0048 ribosomal protein S12; InterPro IPR006032: IPR005679; KEGG: dge:Dgeo_1873 30S ribosomal protein S12; PFAM: ribosomal protein S12/S23; SPTR: 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacteria; PFAM: ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle YP_004172241.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: rrs:RoseRS_3204 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; PRIAM: Aldehyde dehydrogenase (NAD(+)); SPTR: Aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family YP_004172242.1 InterPro IPR000182; KEGG: aba:Acid345_2383 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004172243.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dge:Dgeo_2160 glycosyl transferase, group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1 YP_004172244.1 COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; HAMAP: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro IPR006062: IPR023016: IPR006063; KEGG: dge:Dgeo_2158 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA; PFAM: histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_004172245.1 COGs: COG3004 Na+/H+ antiporter; HAMAP: Na+/H+ antiporter NhaA; InterPro IPR004670; KEGG: ddr:Deide_1p00092 pH-dependent sodium/proton antiporter; PFAM: Na+/H+ antiporter NhaA; SPTR: Na(+)/H(+) antiporter nhaA; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter 1; TIGRFAM: Na+/H+ antiporter NhaA YP_004172246.1 COGs: COG1295 membrane protein; InterPro IPR004664; KEGG: dge:Dgeo_2157 ribonuclease BN; PFAM: ribonuclease BN-related; SPTR: ribonuclease BN; PFAM: ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN) YP_004172247.1 InterPro IPR001434; KEGG: ddd:Dda3937_01477 hemagglutinin/hemolysin-related protein; PFAM: Domain of unknown function DUF11; SPTR: hemagglutinin/hemolysin-related protein; TIGRFAM: Domain of unknown function DUF11; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain YP_004172248.1 InterPro IPR001434; KEGG: ddr:Deide_02020 hypothetical protein; PFAM: Domain of unknown function DUF11; SPTR: uncharacterized protein; TIGRFAM: Domain of unknown function DUF11; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain YP_004172249.1 InterPro IPR001434; KEGG: dge:Dgeo_0310 hypothetical protein; PFAM: Domain of unknown function DUF11; SPTR: uncharacterized protein; TIGRFAM: Domain of unknown function DUF11; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain YP_004172250.1 InterPro IPR001434; KEGG: dra:DR_0685 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Domain of unknown function DUF11 YP_004172251.1 COGs: COG4719 conserved hypothetical protein; KEGG: ddr:Deide_01990 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF11 YP_004172252.1 COGs: COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain; InterPro IPR002035; KEGG: dge:Dgeo_0306 von Willebrand factor, type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: von Willebrand factor, type A; PFAM: von Willebrand factor type A domain YP_004172253.1 KEGG: ddr:Deide_03060 hypothetical protein; SPTR: uncharacterized protein YP_004172254.1 COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: dra:DR_2079 hypothetical protein; PFAM: Transcription regulator PadR N-terminal-like; SPTR: uncharacterized protein; PFAM: Transcriptional regulator PadR-like family YP_004172255.1 KEGG: dra:DR_1952 hypothetical protein; SPTR: uncharacterized protein YP_004172256.1 COGs: COG0496 acid phosphatase; HAMAP: Survival protein SurE-like phosphatase/nucleotidase; InterPro IPR002828; KEGG: ddr:Deide_22950 stationary phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase; SPTR: 5'-nucleotidase surE; TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE YP_004172257.1 COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: ddr:Deide_20260 capsular polysaccharide biosynthesis protein CapD; membrane protein; PFAM: Polysaccharide biosynthesis protein CapD-like; SPTR: capsular polysaccharide biosynthesis protein capD; membrane protein; PFAM: Polysaccharide biosynthesis protein YP_004172258.1 COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR001509: IPR003362; KEGG: pin:Ping_3457 nucleoside-diphosphate-sugar epimerase; PFAM: Bacterial sugar transferase; NAD-dependent epimerase/dehydratase; SPTR: Nucleoside-diphosphate-sugar epimerase; PFAM: Bacterial sugar transferase; NAD dependent epimerase/dehydratase family YP_004172259.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: gbm:Gbem_1624 group glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase, group 1; PFAM: Glycosyl transferases group 1 YP_004172260.1 COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: gbm:Gbem_1623 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase YP_004172261.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: sno:Snov_3210 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Capsular polysaccharide synthesis enzyme CapF; PFAM: NAD dependent epimerase/dehydratase family YP_004172262.1 COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869: IPR013692; KEGG: har:HEAR1147 UDP-glucose 4-epimerase; PFAM: Polysaccharide biosynthesis protein CapD-like; Polysaccharide biosynthesis C-terminal; PRIAM: UDP-glucose 4-epimerase; SPTR: Polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; Polysaccharide biosynthesis protein C-terminal YP_004172263.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: drt:Dret_0384 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1 YP_004172264.1 KEGG: ana:alr2861 hypothetical protein; SPTR: uncharacterized protein; PFAM: O-Antigen ligase YP_004172265.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: bbt:BBta_1022 hypothetical protein; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase, group 1 family protein; PFAM: Glycosyl transferases group 1 YP_004172266.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: pgn:PGN_1251 probable glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1 family protein; PFAM: Glycosyl transferases group 1 YP_004172267.1 InterPro IPR002797; KEGG: gbm:Gbem_1612 lipopolysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: lipopolysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein YP_004172268.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: tel:tlr1344 aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: Tlr1344 protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_004172269.1 InterPro IPR008894; KEGG: bgf:BC1003_0757 WxcM-like domain-containing protein; PFAM: WxcM-like, C-terminal; SPTR: uncharacterized protein; PFAM: WxcM-like, C-terminal YP_004172270.1 COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR001451; KEGG: dau:Daud_1700 hexapaptide repeat-containing transferase; PFAM: Bacterial transferase hexapeptide repeat; SPTR: Transferase hexapeptide repeat containing protein; PFAM: Bacterial transferase hexapeptide (three repeats) YP_004172271.1 COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835: IPR005907; KEGG: ddr:Deide_20316 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form YP_004172272.1 COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR001509: IPR005888; KEGG: dra:DR_A0041 thymidine diphosphoglucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; manually curated; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase YP_004172273.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dau:Daud_1697 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase; PFAM: Glycosyl transferase family 2 YP_004172274.1 InterPro IPR007016; KEGG: ddr:Deide_20251 O-antigen polymerase; membrane protein; PFAM: O-antigen ligase-related; SPTR: O-Antigen polymerase; membrane protein; PFAM: O-Antigen ligase YP_004172275.1 KEGG: ddr:Deide_20252 hypothetical protein; SPTR: uncharacterized protein YP_004172276.1 COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR003856; KEGG: ddr:Deide_20321 tyrosine kinase; PFAM: lipopolysaccharide biosynthesis; SPTR: tyrosine kinase; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family YP_004172277.1 KEGG: rca:Rcas_0423 alpha beta-propellor repeat-containing integrin; SPTR: Integrin alpha beta-propellor repeat protein YP_004172278.1 COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: ddr:Deide_01030 glucokinase, (glucose kinase); PFAM: ROK; PRIAM: N-acylmannosamine kinase; SPTR: Glucokinase, (Glucose kinase); PFAM: ROK family; TIGRFAM: ROK family protein ( glucokinase) YP_004172279.1 KEGG: dge:Dgeo_0243 hypothetical protein; SPTR: uncharacterized protein YP_004172280.1 COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: dge:Dgeo_0244 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family YP_004172281.1 KEGG: ddr:Deide_01060 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004172282.1 InterPro IPR011437; KEGG: ddr:Deide_05260 hypothetical protein; PFAM: Domain of unknown function DUF1540; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1540) YP_004172283.1 KEGG: dge:Dgeo_1817 hypothetical protein; SPTR: uncharacterized protein YP_004172284.1 InterPro IPR004942; KEGG: dge:Dgeo_1816 roadblock/LC7 domain-contain protein; PFAM: Dynein light chain-related; SMART: Dynein light chain-related; SPTR: Roadblock/LC7; PFAM: Roadblock/LC7 domain YP_004172285.1 COGs: COG2229 GTPase; KEGG: dge:Dgeo_1815 gliding motility protein; SPTR: GTPase Rab/Ras family; PFAM: ADP-ribosylation factor family; TIGRFAM: small GTP-binding protein domain YP_004172286.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: dge:Dgeo_2225 peptidase M16-like protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase M16-like protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_004172287.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: dge:Dgeo_2224 peptidase M16-like protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; PRIAM: processing peptidase; SPTR: Peptidase M16-like protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_004172288.1 KEGG: dra:DR_0948 hypothetical protein; SPTR: uncharacterized protein YP_004172289.1 COGs: COG1296 branched-chain amino acid permease (azaleucine resistance); InterPro IPR011606; KEGG: ddr:Deide_06770 hypothetical protein; PFAM: Branched-chain amino acid transport, permease; SPTR: uncharacterized protein; PFAM: AzlC protein; TIGRFAM: 4-azaleucine resistance probable transporter AzlC YP_004172290.1 InterPro IPR008407; KEGG: dra:DR_0634 hypothetical protein; PFAM: Branched-chain amino acid transport, AzlD; SPTR: uncharacterized protein; PFAM: Branched-chain amino acid transport protein (AzlD) YP_004172291.1 InterPro IPR007837; KEGG: ddr:Deide_02210 DinB family protein; PFAM: DinB; SPTR: DinB family protein; PFAM: DinB family YP_004172292.1 COGs: COG3021 conserved hypothetical protein; InterPro IPR005135; KEGG: dra:DR_2293 hypothetical protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: uncharacterized protein; PFAM: Endonuclease/Exonuclease/phosphatase family YP_004172293.1 COGs: COG1970 Large-conductance mechanosensitive channel; InterPro IPR001185; KEGG: dra:DR_2422 large conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel; SPTR: Large conductance mechanosensitive channel; TIGRFAM: Large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein YP_004172294.1 COGs: COG1625 Fe-S oxidoreductase related to NifB/MoaA family; InterPro IPR001478: IPR007549; KEGG: ddr:Deide_02230 hypothetical protein; PFAM: Domain of unknown function DUF512; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: uncharacterized protein; PFAM: PDZ domain (Also known as DHR or GLGF); Protein of unknown function (DUF512); TIGRFAM: FeS-containing Cyanobacterial-specific oxidoreductase YP_004172295.1 InterPro IPR000462; KEGG: dge:Dgeo_2259 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004172296.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: dge:Dgeo_0110 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; PFAM: NUDIX domain YP_004172297.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dge:Dgeo_0109 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-ACP reductase; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004172298.1 COGs: COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; InterPro IPR003265; KEGG: ddr:Deide_02320 DNA-3-methyladenine glycosidase II; PFAM: HhH-GPD domain; SMART: HhH-GPD domain; SPTR: DNA-3-methyladenine glycosidase II; PFAM: HhH-GPD superfamily base excision DNA repair protein YP_004172299.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR001808; KEGG: ddr:Deide_22870 transcriptional regulator, Crp family; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SPTR: transcriptional regulator, Crp family; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain YP_004172300.1 COGs: COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster; InterPro IPR011545: IPR001650: IPR018973: IPR014001; KEGG: dge:Dgeo_0390 DEAD/DEAH box helicase-like protein; PFAM: Protein of unknown function DUF1998; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: DEAD/DEAH box helicase-like protein; PFAM: Helicase conserved C-terminal domain; Domain of unknown function (DUF1998); DEAD/DEAH box helicase YP_004172301.1 COGs: COG0305 Replicative DNA helicase; InterPro IPR007693: IPR007694: IPR007692; KEGG: ddr:Deide_04710 replicative DNA helicase; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; SPTR: replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase YP_004172302.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: ddr:Deide_04720 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; PFAM: NUDIX domain YP_004172303.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR000160: IPR001633; KEGG: ddr:Deide_18060 diguanylate cyclase/phosphodiesterase; membrane protein; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SPTR: diguanylate cyclase/phosphodiesterase; membrane protein; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004172304.1 KEGG: dge:Dgeo_2035 hypothetical protein; SPTR: uncharacterized protein YP_004172305.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dge:Dgeo_2034 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase YP_004172306.1 COGs: COG1327 transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains; HAMAP: ribonucleotide reductase regulator NrdR-like; InterPro IPR005144: IPR003796; KEGG: ddr:Deide_04740 transcriptional regulator NrdR; PFAM: ATP-cone; SPTR: Transcriptional repressor NrdR; TIGRFAM: ribonucleotide reductase regulator NrdR-like; PFAM: ATP cone domain; TIGRFAM: transcriptional regulator NrdR YP_004172307.1 COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: dge:Dgeo_2032 inner-membrane translocator; PFAM: ABC transporter permease; SPTR: ABC-type urea/short-chain amide or branched-chain amino acid transport system, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_004172308.1 COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: dge:Dgeo_2031 inner-membrane translocator; PFAM: ABC transporter permease; SPTR: ABC-type urea/short-chain amide or branched-chain amino acid transport system, permease component; PFAM: Branched-chain amino acid transport system / permease component YP_004172309.1 COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; KEGG: dge:Dgeo_2030 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component; SPTR: ABC-type urea/short-chain amide or branched-chain amino acid transport system, periplasmic component YP_004172310.1 COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439: IPR003593; KEGG: dge:Dgeo_2029 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC-type urea/short-chain amide or branched-chain amino acid transport system, ATPase component; PFAM: ABC transporter YP_004172311.1 COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439: IPR003593; KEGG: dge:Dgeo_2028 ABC transporter related; PFAM: ABC transporter-like; PRIAM: monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type urea short-chain amide or branched-chain amino acid transport system, ATPase component; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter YP_004172312.1 COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: ddr:Deide_04800 acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: acyltransferase; PFAM: Acyltransferase YP_004172313.1 COGs: COG1092 SAM-dependent methyltransferase; KEGG: rxy:Rxyl_0846 SAM-dependent methyltransferase; SPTR: SAM-dependent methyltransferase; PFAM: S-adenosylmethionine-dependent methyltransferase YP_004172314.1 KEGG: ddr:Deide_19750 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3248) YP_004172315.1 KEGG: ddr:Deide_19741 hypothetical protein; SPTR: uncharacterized protein YP_004172316.1 COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; HAMAP: Uncharacterised protein family UPF0173, metal-dependent hydrolase; InterPro IPR001279: IPR022877; KEGG: ddr:Deide_19690 metal-dependent hydrolase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: UPF0173 metal-dependent hydrolase Deide_19690; PFAM: Metallo-beta-lactamase superfamily YP_004172317.1 COGs: COG0515 Serine/threonine protein kinase; InterPro IPR017442: IPR002290: IPR020635; KEGG: dge:Dgeo_0168 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; tyrosine-protein kinase, catalytic domain; SPTR: Serine/threonine protein kinase; PFAM: Protein kinase domain YP_004172318.1 COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005834: IPR006402; KEGG: dge:Dgeo_0096 HAD family hydrolase; PFAM: haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED YP_004172319.1 COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003959: IPR003593; KEGG: ddr:Deide_06910 AAA ATPase; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase; PFAM: ATPase family associated with various cellular activities (AAA) YP_004172320.1 KEGG: ddr:Deide_06801 hypothetical protein; SPTR: uncharacterized protein YP_004172321.1 KEGG: ddr:Deide_06801 hypothetical protein; SPTR: uncharacterized protein YP_004172322.1 KEGG: cme:CMH001C similar to hedgehog protein; SPTR: uncharacterized protein YP_004172323.1 InterPro IPR011747; KEGG: ddr:Deide_06810 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02241, phage tail region protein; PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein YP_004172324.1 KEGG: zro:ZYRO0C18260g hypothetical protein; SPTR: ZYRO0C18260p YP_004172325.1 KEGG: ddr:Deide_06811 hypothetical protein; SPTR: uncharacterized protein YP_004172326.1 InterPro IPR011747; KEGG: ddr:Deide_06820 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02241, phage tail region protein; PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein YP_004172327.1 COGs: COG3497 Phage tail sheath protein FI; InterPro IPR007067; KEGG: ddr:Deide_06830 phage tail sheath protein; SPTR: phage tail sheath protein; PFAM: Phage tail sheath protein YP_004172328.1 KEGG: ddr:Deide_06840 hypothetical protein; SPTR: uncharacterized protein YP_004172329.1 COGs: COG3628 Phage baseplate assembly protein W; InterPro IPR007048; KEGG: ddr:Deide_06850 gpW/GP25 family; PFAM: GPW/gp25; SPTR: GPW/gp25 family; PFAM: Gene 25-like lysozyme YP_004172330.1 InterPro IPR011749; KEGG: ddr:Deide_06860 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02243; PFAM: Baseplate J-like protein; TIGRFAM: conserved hypothetical protein, phage tail-like region YP_004172331.1 InterPro IPR000253: IPR011748; KEGG: ddr:Deide_06870 forkhead associated domain protein; PFAM: Forkhead-associated (FHA) domain; SMART: Forkhead-associated (FHA) domain; SPTR: forkhead associated domain protein; TIGRFAM: Phage tail protein; PFAM: Phage tail protein (Tail_P2_I); FHA domain; TIGRFAM: phage tail protein domain YP_004172332.1 COGs: COG0515 Serine/threonine protein kinase; InterPro IPR002290: IPR020635: IPR000253: IPR017442; KEGG: ddr:Deide_06880 non-specific serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; Forkhead-associated (FHA) domain; SMART: Serine/threonine-protein kinase domain; tyrosine-protein kinase, catalytic domain; Forkhead-associated (FHA) domain; SPTR: Non-specific serine/threonine protein kinase; PFAM: Protein kinase domain; FHA domain YP_004172333.1 KEGG: ddr:Deide_06890 hypothetical protein; SPTR: uncharacterized protein YP_004172334.1 COGs: COG3501 conserved hypothetical protein; InterPro IPR006533; KEGG: ddr:Deide_06900 phage protein D; SPTR: phage protein D; TIGRFAM: Rhs element Vgr protein; PFAM: Phage-related baseplate assembly protein; Phage late control gene D protein (GPD); TIGRFAM: Rhs element Vgr protein YP_004172335.1 KEGG: ddr:Deide_04651 hypothetical protein; SPTR: uncharacterized protein YP_004172336.1 KEGG: mgr:MGG_06440 hypothetical protein; SPTR: Fibronectin type III domain protein YP_004172337.1 KEGG: pat:Patl_4199 SH3, type 3; SPTR: SH3, type 3; PFAM: Protein of unknown function (DUF3380) YP_004172338.1 KEGG: tet:TTHERM_00225750 hypothetical protein; SPTR: uncharacterized protein YP_004172339.1 COGs: COG0013 Alanyl-tRNA synthetase; InterPro IPR012947: IPR002318: IPR018164: IPR003156; KEGG: dge:Dgeo_2201 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; SMART: Threonyl/alanyl tRNA synthetase, SAD; SPTR: Alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase YP_004172340.1 InterPro IPR011701; KEGG: dra:DR_1307 major facilitator family protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator family protein; PFAM: Major Facilitator Superfamily YP_004172341.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: dge:Dgeo_0280 beta-lactamase-like protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: Beta-lactamase-like protein; PFAM: Metallo-beta-lactamase superfamily YP_004172342.1 COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR008331; KEGG: dge:Dgeo_0281 ferritin and Dps; PFAM: Ferritin/Dps protein; SPTR: Ferritin and Dps; PFAM: Ferritin-like domain YP_004172343.1 KEGG: dge:Dgeo_0282 hypothetical protein; SPTR: uncharacterized protein YP_004172344.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: dge:Dgeo_2125 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004172345.1 COGs: COG2129 phosphoesterase related to the Icc protein; InterPro IPR004843; KEGG: ddr:Deide_02970 phosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: phosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_004172346.1 COGs: COG1164 Oligoendopeptidase F; InterPro IPR001567; KEGG: dge:Dgeo_2314 peptidase M3A and M3B, thimet/oligopeptidase F; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; SPTR: Peptidase M3A and M3B, thimet/oligopeptidase F; PFAM: Peptidase family M3; TIGRFAM: oligoendopeptidase, M3 family YP_004172347.1 COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; KEGG: ddr:Deide_01630 flavin reductase-like, FMN-binding; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding; SPTR: Flavin reductase-like, FMN-binding; PFAM: Flavin reductase like domain YP_004172348.1 COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; HAMAP: NAD-dependent histone deacetylase, silent information regulator Sir2; InterPro IPR003000; KEGG: dge:Dgeo_0299 silent information regulator protein Sir2; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; SPTR: NAD-dependent deacetylase, SIR2 family; PFAM: Sir2 family YP_004172349.1 KEGG: dge:Dgeo_0158 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3105) YP_004172350.1 KEGG: sti:Sthe_2650 hypothetical protein; SPTR: uncharacterized protein YP_004172351.1 COGs: COG1239 Mg-chelatase subunit ChlI; KEGG: dge:Dgeo_0412 magnesium protoporphyrin chelatase, SPTR: Magnesium protoporphyrin chelatase, AAA class ATPase; PFAM: Sigma-54 interaction domain YP_004172352.1 COGs: COG1351 alternative thymidylate synthase; HAMAP: thymidylate synthase ThyX; InterPro IPR003669; KEGG: dge:Dgeo_2027 thymidylate synthase (FAD); PFAM: thymidylate synthase ThyX; SPTR: thymidylate synthase thyX; TIGRFAM: thymidylate synthase ThyX; PFAM: thymidylate synthase complementing protein; TIGRFAM: thymidylate synthase, flavin-dependent YP_004172353.1 KEGG: ddr:Deide_3p00450 hypothetical protein; SPTR: uncharacterized protein YP_004172354.1 COGs: COG2311 membrane protein; InterPro IPR007349; KEGG: bpa:BPP1882 hypothetical protein; PFAM: Domain of unknown function DUF418; SPTR: membrane protein; PFAM: Protein of unknown function (DUF418) YP_004172355.1 InterPro IPR001647; KEGG: bld:BLi03302 YfiR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR; PFAM: Bacterial regulatory proteins, tetR family YP_004172356.1 COGs: COG2947 conserved hypothetical protein; InterPro IPR002740; KEGG: dra:DR_0566 hypothetical protein; PFAM: Protein of unknown function DUF55; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF55 YP_004172357.1 COGs: COG0265 trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478: IPR001254; KEGG: dge:Dgeo_2025 peptidase S1 and S6, chymotrypsin/Hap; PFAM: Peptidase S1/S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF; SPTR: Peptidase S1 and S6, chymotrypsin/Hap; PFAM: trypsin YP_004172358.1 KEGG: rrs:RoseRS_1711 hypothetical protein; SPTR: uncharacterized protein; PFAM: Suppressor of fused protein (SUFU) YP_004172359.1 COGs: COG3253 conserved hypothetical protein; InterPro IPR010644; KEGG: dge:Dgeo_1710 chlorite dismutase; PFAM: Chlorite dismutase; SPTR: Chlorite dismutase; PFAM: Chlorite dismutase YP_004172360.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR023210; KEGG: dge:Dgeo_1711 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase family YP_004172361.1 COGs: COG4405 conserved hypothetical protein; InterPro IPR007374; KEGG: bra:BRADO0140 hypothetical protein; PFAM: ASCH domain; SPTR: uncharacterized protein; PFAM: ASCH domain YP_004172362.1 KEGG: sna:Snas_0214 AMP-dependent synthetase and ligase; SPTR: AMP-dependent synthetase and ligase YP_004172363.1 InterPro IPR004360; KEGG: dra:DR_1695 lactoylglutathione lyase-related protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Lactoylglutathione lyase-related protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_004172364.1 KEGG: dia:Dtpsy_3047 HAD-superfamily hydrolase, subfamily IA, variant 3; SPTR: haloacid dehalogenase domain protein hydrolase YP_004172365.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: dge:Dgeo_1713 hypothetical protein; PFAM: Uncharacterised protein family UPF0118; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF20 YP_004172366.1 COGs: COG1426 conserved hypothetical protein; InterPro IPR001387: IPR013229; KEGG: ddr:Deide_07800 hypothetical protein; PFAM: PEGA; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein; PFAM: Helix-turn-helix; PEGA domain YP_004172367.1 COGs: COG1079 ABC-type transport system permease component; InterPro IPR001851; KEGG: dge:Dgeo_1691 inner-membrane translocator; PFAM: ABC transporter permease; SPTR: Probable sugar ABC transporter, permease; PFAM: Branched-chain amino acid transport system / permease component YP_004172368.1 COGs: COG4603 ABC-type uncharacterized transport system permease component; InterPro IPR001851; KEGG: dge:Dgeo_1690 inner-membrane translocator; PFAM: ABC transporter permease; SPTR: Probable sugar ABC transporter, permease; PFAM: Branched-chain amino acid transport system / permease component YP_004172369.1 COGs: COG0105 Nucleoside diphosphate kinase; HAMAP: Nucleoside diphosphate kinase; InterPro IPR001564; KEGG: dra:DR_2499 nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase; PRIAM: Nucleoside-diphosphate kinase; SMART: Nucleoside diphosphate kinase; SPTR: Nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase YP_004172370.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092: IPR006091: IPR006090; KEGG: ddr:Deide_2p01400 glutaryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; PRIAM: Glutaryl-CoA dehydrogenase; SPTR: glutaryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_004172371.1 COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: zpr:ZPR_4378 ROK family member transcriptional repressor; PFAM: ROK; SPTR: ROK family member transcriptional repressor; PFAM: ROK family YP_004172372.1 KEGG: amd:AMED_5277 hypothetical protein; SPTR: uncharacterized protein YP_004172373.1 COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: dra:DR_0623 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII; PRIAM: Aspartate transaminase; SPTR: Aspartate aminotransferase; PFAM: Aminotransferase class I and II YP_004172374.1 COGs: COG2013 conserved hypothetical protein; InterPro IPR003325: IPR002838; KEGG: ddr:Deide_14540 hypothetical protein; PFAM: Protein of unknown function DUF124; Bacterial stress protein; SPTR: uncharacterized protein; PFAM: Bacterial stress protein; Protein of unknown function DUF124 YP_004172375.1 COGs: COG0039 Malate/lactate dehydrogenase; InterPro IPR011304: IPR001236: IPR022383; KEGG: ddr:Deide_22290 L-lactate dehydrogenase, precursor (L-lactic acid dehydrogenase); PFAM: Lactate/malate dehydrogenase, N-terminal; Lactate/malate dehydrogenase, C-terminal; PRIAM: L-lactate dehydrogenase; SPTR: L-lactate dehydrogenase, (L-lactic acid dehydrogenase); TIGRFAM: L-lactate dehydrogenase; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: L-lactate dehydrogenase YP_004172376.1 InterPro IPR005653; KEGG: dge:Dgeo_0154 OstA-like protein protein; PFAM: Organic solvent tolerance-like, N-terminal; SPTR: OstA-like protein protein; PFAM: OstA-like protein YP_004172377.1 InterPro IPR010664; KEGG: dge:Dgeo_0153 OstA-like protein protein; PFAM: lipopolysccharide assembly, LptC-related; SPTR: OstA-like protein protein; PFAM: OstA-like protein YP_004172378.1 KEGG: dge:Dgeo_0152 hypothetical protein; SPTR: uncharacterized protein YP_004172379.1 COGs: COG0084 Mg-dependent DNase; InterPro IPR015991: IPR001130; KEGG: dra:DR_0146 hypothetical protein; PFAM: Deoxyribonuclease, TatD-related; SPTR: uncharacterized protein; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family YP_004172380.1 KEGG: saq:Sare_2991 hypothetical protein; SPTR: uncharacterized protein YP_004172381.1 COGs: COG1739 conserved hypothetical protein; InterPro IPR001498: IPR015269; KEGG: dge:Dgeo_0074 hypothetical protein; PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; SPTR: uncharacterized protein; manually curated; PFAM: Uncharacterized protein family UPF0029; Domain of unknown function (DUF1949); TIGRFAM: uncharacterized protein, YigZ family YP_004172382.1 InterPro IPR000086; KEGG: dge:Dgeo_0075 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; PFAM: NUDIX domain YP_004172383.1 COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: dge:Dgeo_0254 cell wall hydrolase/autolysin; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: Cell wall hydrolase/autolysin; PFAM: N-acetylmuramoyl-L-alanine amidase YP_004172384.1 KEGG: nhl:Nhal_2510 quinone oxidoreductase, YhdH/YhfP family YP_004172385.1 InterPro IPR003790; KEGG: cyb:CYB_0076 hypothetical protein; PFAM: Protein of unknown function DUF187; SPTR: uncharacterized protein YP_004172386.1 COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: dge:Dgeo_2345 DNA processing protein DprA, PFAM: DNA recombination-mediator protein A; SPTR: DNA processing protein DprA, ; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA YP_004172387.1 KEGG: rpt:Rpal_0610 peptide chain release factor 1; SPTR: Peptide chain release factor 1 YP_004172388.1 KEGG: ddr:Deide_23511 hypothetical protein; SPTR: uncharacterized protein YP_004172389.1 COGs: COG1501 Alpha-glucosidase family 31 of glycosyl hydrolase; InterPro IPR000322; KEGG: scl:sce3449 alpha-glucosidase; PFAM: Glycoside hydrolase, family 31; SPTR: Alpha-glucosidase; PFAM: Glycosyl hydrolases family 31 YP_004172390.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: ddr:Deide_01890 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 2,4-dienoyl-CoA reductase (NADPH); SPTR: Peroxisomal 2,4-dienoyl-CoA reductase, (2,4-dienoyl-CoA reductase 2 pDCR); PFAM: short chain dehydrogenase YP_004172391.1 COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: dge:Dgeo_0145 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase family YP_004172392.1 KEGG: ddr:Deide_04380 conserved hypothetical protein, precursor; SPTR: uncharacterized protein YP_004172393.1 KEGG: dge:Dgeo_1768 hypothetical protein; SPTR: uncharacterized protein YP_004172394.1 COGs: COG2385 Sporulation protein and related protein; InterPro IPR013486: IPR013693; KEGG: dge:Dgeo_1767 SpoIID/LytB domain-containing protein; PFAM: Sporulation stage II protein D, amidase enhancer LytB N-terminal; SPTR: SpoIID-like protein; TIGRFAM: Sporulation stage II protein D, amidase enhancer LytB; PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain YP_004172395.1 COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: dge:Dgeo_1766 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase YP_004172396.1 COGs: COG1171 Threonine dehydratase; InterPro IPR005787: IPR001926: IPR001721; KEGG: dra:DR_0567 threonine dehydratase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal; SPTR: Threonine dehydratase, biosynthetic; TIGRFAM: Threonine dehydratase I; PFAM: C-terminal regulatory domain of Threonine dehydratase; Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine ammonia-lyase, biosynthetic, long form; threonine dehydratase, medium form YP_004172397.1 COGs: COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase; InterPro IPR002830: IPR022390; KEGG: ddr:Deide_01420 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: Carboxylyase-related; SPTR: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Menaquinone biosynthesis decarboxylase, SCO4490; Carboxylyase-related; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: menaquinone biosynthesis decarboxylase, SCO4490 family; UbiD family decarboxylases YP_004172398.1 KEGG: sth:STH2612 hypothetical protein; SPTR: uncharacterized protein YP_004172399.1 COGs: COG1438 Arginine repressor; HAMAP: Arginine repressor; InterPro IPR001669: IPR020900: IPR020899; KEGG: dge:Dgeo_2316 arginine repressor, ArgR; PFAM: Arginine repressor, DNA-binding domain; Arginine repressor, C-terminal; SPTR: Arginine repressor; TIGRFAM: Arginine repressor; PFAM: Arginine repressor, C-terminal domain; Arginine repressor, DNA binding domain; TIGRFAM: arginine repressor YP_004172400.1 COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR005252: IPR003382: IPR007085; KEGG: dge:Dgeo_2315 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein; PRIAM: Phosphopantothenate--cysteine ligase; SPTR: Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; manually curated; PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic YP_004172401.1 HAMAP: DNA-directed RNA polymerase, omega subunit; InterPro IPR003716: IPR006110; KEGG: dge:Dgeo_0252 DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase, subunit omega/K/RPABC2; SPTR: DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; TIGRFAM: DNA-directed RNA polymerase, omega subunit YP_004172402.1 KEGG: cmi:CMM_1462 hypothetical protein; SPTR: Possible ComEC operon protein YP_004172403.1 KEGG: sro:Sros_7394 ABC transporter ATP-binding protein; SPTR: ABC transporter ATP-binding protein YP_004172404.1 COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523; KEGG: dge:Dgeo_2211 Mg2+ transporter protein, CorA-like protein; PFAM: Mg2+ transporter protein, CorA-like; SPTR: Mg2+ transporter protein, CorA-like protein; PFAM: CorA-like Mg2+ transporter protein YP_004172405.1 COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523; KEGG: dge:Dgeo_0150 Mg2+ transporter protein, CorA-like protein; PFAM: Mg2+ transporter protein, CorA-like; SPTR: Mg2+ transporter protein, CorA-like protein; PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA) YP_004172406.1 COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation; HAMAP: Camphor resistance CrcB protein; InterPro IPR003691; KEGG: ddr:Deide_22990 camphor resistance; membrane protein; PFAM: Camphor resistance CrcB protein; SPTR: Protein CrcB homolog; TIGRFAM: Camphor resistance CrcB protein; PFAM: CrcB-like protein; TIGRFAM: crcB protein YP_004172407.1 COGs: COG1570 Exonuclease VII large subunit; InterPro IPR020579; KEGG: dra:DR_0186 exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; PRIAM: Exodeoxyribonuclease VII; SPTR: Exodeoxyribonuclease 7 large subunit; PFAM: Exonuclease VII, large subunit YP_004172408.1 COGs: COG2041 Sulfite oxidase; HAMAP: Sulphoxide reductase catalytic subunit YedY; InterPro IPR022867: IPR000572; KEGG: ddr:Deide_20380 sulfite oxidase subunit YedY; PFAM: Oxidoreductase, molybdopterin-binding domain; SPTR: molybdopterin binding protein; oxidoreductase; PFAM: Oxidoreductase molybdopterin binding domain YP_004172409.1 COGs: COG2717 membrane protein; InterPro IPR013130; KEGG: dge:Dgeo_0878 sulfite oxidase subunit YedZ; PFAM: Flavoprotein transmembrane component; SPTR: Sulfoxide reductase heme-binding subunit yedZ; PFAM: Ferric reductase like transmembrane component YP_004172410.1 KEGG: ddr:Deide_20810 hypothetical protein; SPTR: uncharacterized protein YP_004172411.1 InterPro IPR003761; KEGG: dge:Dgeo_0027 hypothetical protein; PFAM: Exonuclease VII, small subunit; SPTR: Exonuclease VII small subunit XseB; PFAM: Exonuclease VII small subunit YP_004172412.1 COGs: COG0261 ribosomal protein L21; HAMAP: ribosomal protein L21; InterPro IPR001787; KEGG: dra:DR_0086 ribosomal protein L21; PFAM: ribosomal protein L21; SPTR: 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21 YP_004172413.1 COGs: COG0211 ribosomal protein L27; HAMAP: ribosomal protein L27; InterPro IPR001684; KEGG: ddr:Deide_22190 50S ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal L27 protein; TIGRFAM: ribosomal protein L27 YP_004172414.1 COGs: COG0536 GTPase; HAMAP: GTP-binding protein Obg/CgtA; InterProIPR014100: IPR005225: IPR015349: IPR006169: IPR 002917; KEGG: dge:Dgeo_2218 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; GTP-binding protein GTP1/OBG, C-terminal; SPTR: GTPase obg; TIGRFAM: GTP-binding protein Obg/CgtA; Small GTP-binding protein; GTP-binding protein GTP1/OBG, C-terminal; PFAM: GTPase of unknown function; GTP1/OBG; Domain of unknown function (DUF1967); TIGRFAM: Obg family GTPase CgtA; Obg family GTPase CgtA, C-terminal extension; small GTP-binding protein domain YP_004172415.1 COGs: COG1713 HD superfamily hydrolase involved in NAD metabolism; InterPro IPR003607: IPR005249: IPR006674; KEGG: dge:Dgeo_0133 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Metal dependent phosphohydrolase; TIGRFAM: Conserved hypothetical protein CHP00488; PFAM: HD domain; TIGRFAM: HD superfamily hydrolase of NAD metabolism YP_004172416.1 COGs: COG1316 Transcriptional regulator; InterPro IPR004474; KEGG: ddr:Deide_19730 transcriptional regulator, LytR/CspA/Psr family; PFAM: Cell envelope-related transcriptional attenuator; SPTR: transcriptional regulator, LytR/CspA/Psr family; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain YP_004172417.1 COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: dge:Dgeo_0131 iojap-related protein; PFAM: ribosome-associated, Iojap-like; SPTR: Iojap-related protein; TIGRFAM: ribosome-associated, Iojap-like; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein YP_004172418.1 COGs: COG4110 Uncharacterized protein involved in stress response; InterPro IPR003325: IPR019303; KEGG: dra:DR_2223 tellurium resistance protein TerA; PFAM: tellurium resistance; Bacterial stress protein; SPTR: tellurium resistance protein TerA; PFAM: tellurium resistance protein; Bacterial stress protein YP_004172419.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: dge:Dgeo_2836 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8, subtilisin; PFAM: Subtilase family YP_004172420.1 COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterProIPR019734: IPR003607: IPR000160: IPR001440: IPR 011717: IPR006674; KEGG: mrb:Mrub_1382 diguanylate cyclase and serine/threonine protein kinase with TPR repeats; PFAM: Metal-dependent phosphohydrolase, HD subdomain; Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; Diguanylate cyclase, predicted; SMART: Metal-dependent phosphohydrolase, HD domain; Tetratricopeptide repeat; Diguanylate cyclase, predicted; SPTR: Diguanylate cyclase and serine/threonine protein kinase with TPR repeats; PFAM: HD domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004172421.1 COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484: IPR018485; KEGG: maq:Maqu_1344 carbohydrate kinase, FGGY; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; PRIAM: Xylulokinase; SPTR: Carbohydrate kinase, FGGY; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain YP_004172422.1 COGs: COG0578 Glycerol-3-phosphate dehydrogenase; InterPro IPR006076; KEGG: hau:Haur_0359 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; PRIAM: Glycerol-3-phosphate dehydrogenase; SPTR: Glycerol-3-phosphate dehydrogenase 2; PFAM: FAD dependent oxidoreductase YP_004172423.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094: IPR004113; KEGG: hau:Haur_0358 FAD linked oxidase domain-containing protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; PRIAM: Alkylglycerone-phosphate synthase; SPTR: FAD linked oxidase domain protein; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain YP_004172424.1 COGs: COG2186 Transcriptional regulators; InterPro IPR000524: IPR011711: IPR008920; KEGG: dol:Dole_2617 regulatory protein GntR HTH; PFAM: HTH transcriptional regulator, GntR; Fatty acid responsive transcription factor FadR, C-terminal; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal; SPTR: Regulatory protein GntR HTH; PFAM: FadR C-terminal domain; Bacterial regulatory proteins, gntR family; TIGRFAM: fatty acid metabolism transcriptional regulator FadR YP_004172425.1 COGs: COG3469 Chitinase; InterPro IPR001919: IPR011583: IPR001223; KEGG: kfl:Kfla_5283 glycoside hydrolase family 18; PFAM: Glycoside hydrolase, family 18, catalytic domain; Cellulose-binding domain, family II, bacterial type; PRIAM: Chitinase; SMART: Cellulose-binding domain, family II, bacterial type; Chitinase II; SPTR: Chitinase II; PFAM: Cellulose binding domain; Glycosyl hydrolases family 18 YP_004172426.1 COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterPro IPR011810: IPR005479: IPR013221: IPR004101; KEGG: ddr:Deide_2p01260 cyanophycin synthetase; PFAM: Mur ligase, central; Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Mur ligase, C-terminal; PRIAM: Cyanophycin synthase (L-aspartate-adding); SPTR: cyanophycin synthetase; TIGRFAM: Cyanophycin synthetase; PFAM: RimK-like ATP-grasp domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: cyanophycin synthetase; glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_004172427.1 COGs: COG1446 Asparaginase; InterPro IPR000246; KEGG: ddr:Deide_2p01270 asparaginase (L-asparaginase); PFAM: Peptidase T2, asparaginase 2; SPTR: asparaginase (L-asparaginase); PFAM: Asparaginase YP_004172428.1 COGs: COG4242 Cyanophycinase and related exopeptidase; InterPro IPR011811: IPR005320; KEGG: rlg:Rleg_5801 cyanophycinase; PFAM: Peptidase S51; PRIAM: Cyanophycinase; SPTR: Cyanophycinase; TIGRFAM: Peptidase S51, cyanophycinase; PFAM: Peptidase family S51; TIGRFAM: cyanophycinase YP_004172429.1 KEGG: bvu:BVU_0834 hypothetical protein; SPTR: uncharacterized protein YP_004172430.1 COGs: COG0780 Enzyme related to GTP cyclohydrolase I; HAMAP: Nitrile oxidoreductase, NADPH-dependent, QueF; InterPro IPR016856: IPR020602; KEGG: ddr:Deide_19030 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: PreQ(1) synthase; SPTR: NADPH-dependent 7-cyano-7-deazaguanine reductase 1; TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, QueF; PFAM: GTP cyclohydrolase I; TIGRFAM: 7-cyano-7-deazaguanine reductase YP_004172431.1 COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: ddr:Deide_00320 6-pyruvoyl tetrahydrobiopterin synthase, (PTP synthase); PFAM: 6-pyruvoyl tetrahydropterin synthase-related; SPTR: 6-pyruvoyl tetrahydrobiopterin synthase, (PTP synthase); PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein YP_004172432.1 COGs: COG0602 Organic radical activating protein; InterPro IPR007197; KEGG: ddr:Deide_00330 organic radical activating enzyme; PFAM: Radical SAM; SPTR: Organic radical activating enzyme; PFAM: Radical SAM superfamily YP_004172433.1 COGs: COG0603 PP-loop superfamily ATPase; InterPro IPR018317; KEGG: ddr:Deide_00340 queuosine biosynthesis protein; PFAM: Queuosine synthesis; SPTR: 7-cyano-7-deazaguanine synthase; TIGRFAM: Queuosine synthesis; PFAM: ExsB; TIGRFAM: exsB protein YP_004172434.1 COGs: COG4329 membrane protein; InterPro IPR018719; KEGG: rsq:Rsph17025_3315 hypothetical protein; PFAM: Protein of unknown function DUF2243, membrane; SPTR: uncharacterized protein; PFAM: Predicted membrane protein (DUF2243) YP_004172435.1 COGs: COG3652 outer membrane protein; KEGG: ade:Adeh_0851 hypothetical protein; SPTR: uncharacterized protein YP_004172436.1 KEGG: bxe:Bxe_A1948 outer membrane phospholipase A; SPTR: uncharacterized protein YP_004172437.1 KEGG: ncr:NCU00423 hypothetical protein; SPTR: Chromosome 3 SCAF14987, whole genome shotgun sequence. YP_004172438.1 KEGG: dge:Dgeo_2204 hypothetical protein; SPTR: uncharacterized protein YP_004172439.1 COGs: COG3947 Response regulator containing CheY-like receiver and SARP domains; InterPro IPR005158; KEGG: mrb:Mrub_2896 response regulator receiver and SARP domain-containing protein; PFAM: Bacterial transcriptional activator domain; SPTR: Response regulator receiver and SARP domain protein; PFAM: Bacterial transcriptional activator domain YP_004172440.1 COGs: COG3230 Heme oxygenase; InterPro IPR016053; KEGG: dra:DR_A0051 heme oxygenase; PFAM: Haem oxygenase-like; SPTR: Bacteriophytochrome heme oxygenase; PFAM: Heme oxygenase YP_004172441.1 COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR003018: IPR003661: IPR003594: IPR013654: IPR 013515; KEGG: ddr:Deide_3p02370 histidine kinase, classic, bacteriophytochrome; PFAM: ATPase-like, ATP-binding domain; PAS fold-2; GAF; phytochrome, central region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: histidine kinase, classic, bacteriophytochrome; PFAM: GAF domain; histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; phytochrome region; PAS fold YP_004172442.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: ddr:Deide_2p01120 response regulator, CheY; response regulator rcp1; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: response regulator, CheY; response regulator rcp1; PFAM: Response regulator receiver domain YP_004172443.1 KEGG: dra:DR_2218 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2983) YP_004172444.1 KEGG: dra:DR_2215 hypothetical protein; SPTR: uncharacterized protein YP_004172445.1 KEGG: dra:DR_2214 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3706) YP_004172446.1 KEGG: dra:DR_2213 hypothetical protein; SPTR: uncharacterized protein YP_004172447.1 KEGG: dge:Dgeo_1085 hypothetical protein; SPTR: uncharacterized protein YP_004172448.1 InterPro IPR000551; KEGG: msv:Mesil_0170 transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; SPTR: Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein YP_004172449.1 KEGG: dre:560250 si:dkeyp-9c8.1; SPTR: uncharacterized protein YP_004172450.1 InterPro IPR015141; KEGG: dge:Dgeo_0721 hypothetical protein; PFAM: Phospholipase A2, prokaryotic/fungal; SPTR: RhsA; PFAM: Prokaryotic phospholipase A2 YP_004172451.1 KEGG: scl:sce4682 hypothetical protein; SPTR: uncharacterized protein YP_004172453.1 COGs: COG3947 Response regulator containing CheY-like receiver and SARP domains; KEGG: fre:Franean1_5465 SARP family transcriptional regulator; SPTR: Transcriptional regulator, SARP family; PFAM: Bacterial transcriptional activator domain YP_004172454.1 COGs: COG3372 conserved hypothetical protein; InterPro IPR008508; KEGG: ddr:Deide_17310 hypothetical protein; PFAM: Protein of unknown function DUF790, endonuclease-like; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF790) YP_004172455.1 COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR014001: IPR001650: IPR006935; KEGG: ddr:Deide_17320 bifunctional protein: helicase type III restriction enzyme/DEAD/DEAH box helicase; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: bifunctional protein: Helicase Type III restriction enzyme/ DEAD/DEAH box helicase; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit YP_004172456.1 COGs: COG3546 Mn-containing catalase; InterPro IPR007760; KEGG: tra:Trad_0726 catalase; PFAM: Catalase, manganese; PRIAM: Catalase; SPTR: Catalase; PFAM: manganese containing catalase YP_004172457.1 COGs: COG2199 FOG: GGDEF domain; InterPro IPR003018: IPR000160; KEGG: ddr:Deide_1p01751 diguanylate cyclase (GGDEF domain) with GAF sensor; PFAM: Diguanylate cyclase, predicted; GAF; SMART: Diguanylate cyclase, predicted; GAF; SPTR: Diguanylate cyclase (GGDEF domain) with GAF sensor; TIGRFAM: Diguanylate cyclase, predicted; PFAM: GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004172458.1 KEGG: svi:Svir_05420 nucleoside ABC transporter membrane protein; SPTR: Nucleoside ABC transporter membrane protein YP_004172459.1 KEGG: tra:Trad_1221 hypothetical protein; SPTR: uncharacterized protein YP_004172460.1 KEGG: bae:BATR1942_07810 hypothetical protein; SPTR: uncharacterized protein YP_004172461.1 KEGG: ssm:Spirs_1965 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004172462.1 KEGG: ath:AT3G09520 ATEXO70H4 (exocyst subunit EXO70 family protein H4); protein binding; SPTR: uncharacterized protein F11F8_10 YP_004172463.1 COGs: COG4422 Bacteriophage protein gp37; InterPro IPR011101; KEGG: mrb:Mrub_0584 hypothetical protein; PFAM: Phage Gp37Gp68; SPTR: hypothetical protein; PFAM: Phage protein Gp37/Gp68 YP_004172464.1 COGs: COG0338 Site-specific DNA methylase; InterPro IPR012327; KEGG: swo:Swol_0503 site-specific DNA methylase-like protein; PFAM: D12 class N6 adenine-specific DNA methyltransferase; SPTR: Site-specific DNA methylase-like protein; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_004172465.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: tra:Trad_1811 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; PFAM: Phage integrase family YP_004172466.1 COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR001645: IPR013221: IPR004101; KEGG: dge:Dgeo_0083 FolC bifunctional protein; PFAM: Mur ligase, C-terminal; Mur ligase, central; SPTR: Folylpolyglutamate synthetase; TIGRFAM: Folylpolyglutamate synthetase; manually curated; PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase YP_004172467.1 COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: dra:DR_0023 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: Phosphoribosylaminoimidazole carboxylase, core; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: Phosphoribosylaminoimidazole carboxylase, core; PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein YP_004172468.1 COGs: COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); InterPro IPR005875: IPR003135; KEGG: dge:Dgeo_0081 phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp domain; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurK protein YP_004172469.1 COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: ddr:Deide_04160 2-keto-3-deoxygluconate kinase, KdgK; PFAM: Carbohydrate/purine kinase; SPTR: 2-keto-3-deoxygluconate kinase, KdgK; PFAM: pfkB family carbohydrate kinase YP_004172470.1 COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: ddr:Deide_04170 aminodeoxychorismate lyase precursor; PFAM: Uncharacterised protein family UPF0755; SPTR: Aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family UPF0755; PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family YP_004172471.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593: IPR003439; KEGG: dge:Dgeo_0023 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Iron-chelate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type Fe3+-siderophores transport system, ATPase component; PFAM: ABC transporter YP_004172472.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: dge:Dgeo_0024 transport system permease; PFAM: ABC transporter permease; SPTR: ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family YP_004172473.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: dge:Dgeo_0025 periplasmic binding protein; PFAM: Periplasmic binding protein; SPTR: ABC-type iron transport system, periplasmic component; PFAM: Periplasmic binding protein YP_004172474.1 COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; InterPro IPR022409: IPR000601: IPR014044; KEGG: dge:Dgeo_1557 allergen V5/TPX-1 related; PFAM: CAP domain; PKD domain; SMART: PKD/Chitinase domain; SPTR: Uncharacterized protein containing SCP/PR1 domain; PFAM: Cysteine-rich secretory protein family; PKD domain YP_004172475.1 KEGG: dra:DR_0591 hypothetical protein; SPTR: uncharacterized protein YP_004172476.1 COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: ddr:Deide_21810 amidohydrolase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: amidohydrolase; PFAM: Carbon-nitrogen hydrolase YP_004172477.1 KEGG: ddr:Deide_01930 hypothetical protein; SPTR: uncharacterized protein; PFAM: Acetyltransferase (GNAT) family YP_004172478.1 InterPro IPR011721: IPR009959; KEGG: ddr:Deide_01940 hypothetical protein; PFAM: Protein of unknown function DUF1486; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02096; PFAM: SnoaL-like polyketide cyclase; TIGRFAM: conserved hypothetical protein, steroid delta-isomerase-related YP_004172479.1 KEGG: hwa:HQ1081A halomucin; SPTR: Fibronectin type III domain protein YP_004172480.1 COGs: COG2138 conserved hypothetical protein; InterPro IPR002762; KEGG: dge:Dgeo_0274 hypothetical protein; PFAM: Cobalamin (vitamin B12) biosynthesis CbiX; SPTR: Cobalamin (Vitamin B12) biosynthesis CbiX protein; PFAM: CbiX YP_004172481.1 KEGG: ddr:Deide_21250 hypothetical protein; SPTR: uncharacterized protein YP_004172482.1 COGs: COG2195 Di- and tripeptidase; InterPro IPR002933: IPR011650; KEGG: dge:Dgeo_0276 peptidase M20; PFAM: Peptidase M20; Peptidase M20, dimerisation; SPTR: Peptidase M20; manually curated; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain YP_004172483.1 COGs: COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; InterPro IPR004625: IPR013749; KEGG: dge:Dgeo_0144 pyridoxamine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; PRIAM: Pyridoxal kinase; SPTR: Pyridoxamine kinase; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: pyridoxal kinase YP_004172484.1 InterPro IPR007280; KEGG: dge:Dgeo_2223 peptidase-like protein; PFAM: Peptidase, C-terminal, archaeal/bacterial; SPTR: PPC, peptidase containing PKD repeats; PFAM: Bacterial pre-peptidase C-terminal domain YP_004172485.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR010259: IPR000209: IPR003137: IPR010435; KEGG: dge:Dgeo_2222 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Proteinase inhibitor I9, subtilisin propeptide; Protease-associated domain, PA; Peptidase S8A, DUF1034 C-terminal; PRIAM: Lactocepin; SPTR: Peptidase S8, subtilisin-like protein; PFAM: PA domain; Fn3-like domain (DUF1034); Peptidase inhibitor I9; Subtilase family YP_004172486.1 InterPro IPR000209: IPR007280; KEGG: tra:Trad_0078 peptidase S8 and S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Peptidase, C-terminal, archaeal/bacterial; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin; PFAM: Bacterial pre-peptidase C-terminal domain; Subtilase family YP_004172487.1 KEGG: tra:Trad_0079 hypothetical protein; SPTR: uncharacterized protein YP_004172488.1 COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: dge:Dgeo_0026 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_004172489.1 COGs: COG0283 Cytidylate kinase; HAMAP: Cytidylate kinase; InterPro IPR003136: IPR011994; KEGG: dge:Dgeo_2220 cytidylate kinase; PFAM: Cytidylate kinase domain; PRIAM: Cytidylate kinase; SPTR: Cytidylate kinase; TIGRFAM: Cytidylate kinase; PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase YP_004172490.1 COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: dge:Dgeo_2219 peptidylprolyl isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_004172491.1 COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: dge:Dgeo_0070 peptidylprolyl isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PRIAM: Peptidylprolyl isomerase; SPTR: Peptidylprolyl isomerase; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_004172492.1 COGs: COG0816 endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); HAMAP: Resolvase, holliday junction-type, YqgF-like; InterPro IPR006641: IPR005227; KEGG: ddr:Deide_04280 Holliday junction resolvase; PFAM: Resolvase, holliday junction-type, YqgF-like; SMART: Resolvase, RNase H-like fold; SPTR: Holliday junction resolvase; PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: RNAse H-fold protein YqgF YP_004172493.1 COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: dge:Dgeo_1797 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR: enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase family YP_004172494.1 COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR019734: IPR000160: IPR001633: IPR001440: IPR 011717; KEGG: ddr:Deide_21850 diguanylate-cyclase; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; Tetratricopeptide repeat; SPTR: diguanylate-cyclase; TIGRFAM: Diguanylate cyclase, predicted; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_004172495.1 COGs: COG0248 Exopolyphosphatase; InterPro IPR003695: IPR006674; KEGG: ddr:Deide_01820 exopolyphosphatase, (ExopolyPase), (metaphosphatase), (Ppx/GppA phosphatase); PFAM: Ppx/GppA phosphatase; Metal-dependent phosphohydrolase, HD subdomain; PRIAM: Guanosine-5'-triphosphate,3'-diphosphate diphosphatase; SPTR: Exopolyphosphatase, (ExopolyPase), (Metaphosphatase), (Ppx/GppA phosphatase); PFAM: HD domain; Ppx/GppA phosphatase family YP_004172496.1 KEGG: dge:Dgeo_0273 hypothetical protein; SPTR: uncharacterized protein YP_004172497.1 COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342: IPR010197: IPR013341; KEGG: ddr:Deide_03010 mandelate racemase/muconate lactonizing enzyme-like protein; PFAM: mandelate racemase/muconate lactonizing enzyme, C-terminal; mandelate racemase/muconate lactonizing enzyme, N-terminal; PRIAM: o-succinylbenzoate synthase; SMART: mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: mandelate racemase/muconate lactonizing enzyme-like protein; TIGRFAM: O-succinylbenzoic acid (OSB) synthetase, low GC Gram-positive bacteria/archaea; PFAM: mandelate racemase / muconate lactonizing enzyme, C-terminal domain; mandelate racemase / muconate lactonizing enzyme, N-terminal domain; TIGRFAM: o-succinylbenzoic acid (OSB) synthetase YP_004172498.1 COGs: COG3375 conserved hypothetical protein; KEGG: dge:Dgeo_0392 hypothetical protein; SPTR: Acyl-CoA N-acyltransferase superfamily enzyme YP_004172499.1 KEGG: ddr:Deide_22530 hypothetical protein; SPTR: uncharacterized protein YP_004172500.1 KEGG: ddr:Deide_22521 hypothetical protein; SPTR: uncharacterized protein YP_004172501.1 KEGG: ddr:Deide_22530 hypothetical protein; SPTR: uncharacterized protein YP_004172502.1 KEGG: hoh:Hoch_1274 hypothetical protein; SPTR: uncharacterized protein YP_004172503.1 COGs: COG0304 3-oxoacyl-ACP synthase; InterPro IPR020841: IPR017568: IPR014030: IPR014031; KEGG: dge:Dgeo_0437 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase II; SMART: Polyketide synthase, beta-ketoacyl synthase domain; SPTR: Beta-ketoacyl synthase; TIGRFAM: 3-oxoacyl-ACP synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II YP_004172504.1 COGs: COG0236 Acyl carrier protein; HAMAP: Acyl carrier protein (ACP); InterPro IPR020806: IPR003231: IPR006163; KEGG: dge:Dgeo_0436 acyl carrier protein; PFAM: Phosphopantetheine-binding; SMART: Polyketide synthase, phosphopantetheine-binding; SPTR: Acyl carrier protein; TIGRFAM: Acyl carrier protein (ACP); PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein YP_004172505.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR020842: IPR011284: IPR002198; KEGG: ddr:Deide_05730 3-oxoacyl-ACP reductase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR; SPTR: 3-oxoacyl-ACP reductase; TIGRFAM: 3-oxoacyl-ACP reductase; PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-ACP reductase YP_004172506.1 COGs: COG0331 ACP S-malonyltransferase; InterPro IPR020801: IPR004410: IPR014043; KEGG: dge:Dgeo_0434 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; PRIAM: ACP S-malonyltransferase; SMART: Polyketide synthase, acyl transferase domain; SPTR: Malonyl CoA-acyl carrier protein transacylase; TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase YP_004172507.1 COGs: COG0332 3-oxoacyl-ACP; HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); InterPro IPR004655: IPR013751: IPR013747; KEGG: dge:Dgeo_0433 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: 3-oxoacyl-ACP synthase 3; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-ACP synthase III YP_004172508.1 COGs: COG0265 trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478: IPR001254; KEGG: ddr:Deide_01170 peptidase S1 and S6, chymotrypsin/Hap precursor; PFAM: Peptidase S1/S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF; SPTR: Peptidase S1 and S6, chymotrypsin/Hap; PFAM: trypsin YP_004172509.1 COGs: COG2105 conserved hypothetical protein; InterPro IPR009288; KEGG: dge:Dgeo_2184 hypothetical protein; PFAM: AIG2-like; SPTR: uncharacterized protein; PFAM: AIG2-like family YP_004172510.1 COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); HAMAP: Trigger factor; InterPro IPR005215: IPR008881: IPR008880; KEGG: ddr:Deide_05690 trigger factor, TF; PFAM: Trigger factor, C-terminal, bacterial; Trigger factor, ribosome-binding, bacterial; SPTR: Trigger factor; TIGRFAM: Trigger factor; PFAM: Bacterial trigger factor protein (TF) C-terminus; Bacterial trigger factor protein (TF); TIGRFAM: trigger factor YP_004172511.1 COGs: COG1078 HD superfamily phosphohydrolase; InterPro IPR003607: IPR006674; KEGG: pth:PTH_2567 phosphohydrolases; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Phosphohydrolases; PFAM: HD domain YP_004172512.1 InterPro IPR000620; KEGG: dge:Dgeo_0270 hypothetical protein; PFAM: Drug/metabolite transporter; SPTR: Permease of the drug/metabolite transporter (DMT) superfamily; PFAM: EamA-like transporter family YP_004172513.1 COGs: COG2258 conserved hypothetical protein; InterPro IPR005302; KEGG: sro:Sros_4068 hypothetical protein; PFAM: Molybdenum cofactor sulfurase, C-terminal; SPTR: uncharacterized protein; PFAM: MOSC domain YP_004172514.1 KEGG: pak:HMPREF0675_4137 histidine kinase; SPTR: uncharacterized protein YP_004172515.1 COGs: COG1160 GTPase; HAMAP: GTP-binding, EngA; InterPro IPR005225: IPR016484: IPR002917; KEGG: dge:Dgeo_2103 GTP-binding protein EngA; PFAM: GTP-binding protein, HSR1-related; SPTR: GTPase Der; TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain YP_004172516.1 KEGG: hba:Hbal_0038 hypothetical protein; SPTR: uncharacterized protein YP_004172517.1 InterPro IPR005149; KEGG: fra:Francci3_3907 PadR family transcriptional regulator; PFAM: Transcription regulator PadR N-terminal-like; SPTR: Transcriptional regulator, PadR family; PFAM: Transcriptional regulator PadR-like family YP_004172518.1 COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: dge:Dgeo_1945 peptidylprolyl isomerase, FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; PRIAM: Peptidylprolyl isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_004172519.1 KEGG: dge:Dgeo_2018 hypothetical protein; SPTR: uncharacterized protein YP_004172520.1 COGs: COG2383 conserved hypothetical protein; InterPro IPR007014; KEGG: dge:Dgeo_1520 FUN14; PFAM: FUN14; SPTR: FUN14 family protein; PFAM: FUN14 family YP_004172521.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: dge:Dgeo_1519 ECF subfamily RNA polymerase sigma-24 factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004172522.1 KEGG: ddr:Deide_20560 hypothetical protein; SPTR: uncharacterized protein YP_004172523.1 KEGG: ddr:Deide_19760 hypothetical protein; SPTR: uncharacterized protein YP_004172524.1 COGs: COG1001 Adenine deaminase; HAMAP: Adenine deaminase; InterPro IPR006679: IPR006680; KEGG: dge:Dgeo_0420 adenine deaminase; PFAM: Amidohydrolase 1; PRIAM: Adenine deaminase; SPTR: Adenine deaminase; TIGRFAM: Adenine deaminase; PFAM: Amidohydrolase family; TIGRFAM: adenine deaminase YP_004172525.1 COGs: COG0633 Ferredoxin; InterPro IPR001041; KEGG: dra:DR_2075 ferredoxin; PFAM: Ferredoxin; SPTR: Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain YP_004172526.1 KEGG: dge:Dgeo_0418 hypothetical protein; SPTR: uncharacterized protein YP_004172527.1 COGs: COG0795 permease; InterPro IPR005495; KEGG: dge:Dgeo_0048 permease YjgP/YjgQ; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Permease YjgP/YjgQ; PFAM: Predicted permease YjgP/YjgQ family YP_004172528.1 COGs: COG0795 permease; InterPro IPR005495; KEGG: dge:Dgeo_0049 permease YjgP/YjgQ; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Permease YjgP/YjgQ; PFAM: Predicted permease YjgP/YjgQ family YP_004172529.1 KEGG: dge:Dgeo_0033 hypothetical protein; SPTR: uncharacterized protein YP_004172530.1 COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR001279: IPR011108; KEGG: dra:DR_A0069 cleavage and polyadenylation specificity factor-related protein; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like; SPTR: Cleavage and polyadenylation specificity factor-related protein; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain YP_004172531.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: dra:DR_2363 hypothetical protein; PFAM: UspA; SPTR: uncharacterized protein; PFAM: Universal stress protein family YP_004172532.1 COGs: COG2013 conserved hypothetical protein; InterPro IPR002838; KEGG: ddr:Deide_14540 hypothetical protein; PFAM: Protein of unknown function DUF124; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF124 YP_004172533.1 KEGG: ddr:Deide_2p02134 hypothetical protein; SPTR: uncharacterized protein YP_004172534.1 COGs: COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); InterPro IPR006367; KEGG: dge:Dgeo_2129 siroheme synthase; SPTR: Siroheme synthase; TIGRFAM: Sirohaem synthase, N-terminal; TIGRFAM: siroheme synthase, N-terminal domain YP_004172535.1 COGs: COG0373 Glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; InterPro IPR000343: IPR015895: IPR006151; KEGG: ddr:Deide_19150 glutamyl-tRNA reductase (GluTR); PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; SPTR: Glutamyl-tRNA reductase; TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; PFAM: shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, N-terminal domain; TIGRFAM: glutamyl-tRNA reductase YP_004172536.1 COGs: COG2311 membrane protein; InterPro IPR007349; KEGG: dge:Dgeo_2327 hypothetical protein; PFAM: Domain of unknown function DUF418; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF418) YP_004172537.1 COGs: COG0192 S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthetase; InterPro IPR002133: IPR022628: IPR022629: IPR022630; KEGG: ddr:Deide_19790 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal; PRIAM: Methionine adenosyltransferase; SPTR: S-adenosylmethionine synthase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal domain; TIGRFAM: S-adenosylmethionine synthetase YP_004172538.1 InterPro IPR013217; KEGG: dge:Dgeo_2089 methyltransferase type 12; PFAM: Methyltransferase type 12; SPTR: Methyltransferase type 12; PFAM: Methyltransferase domain YP_004172539.1 InterPro IPR014044; KEGG: vex:VEA_001041 hypothetical protein; PFAM: CAP domain; SPTR: uncharacterized protein; PFAM: Cysteine-rich secretory protein family YP_004172540.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: dge:Dgeo_0424 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: o-succinylbenzoate--CoA ligase; SPTR: AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme YP_004172541.1 InterPro IPR001450; KEGG: dge:Dgeo_0777 4Fe-4S ferredoxin, iron-sulfur binding; PFAM: 4Fe-4S binding domain; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding; PFAM: 4Fe-4S binding domain YP_004172542.1 KEGG: ddr:Deide_22140 hypothetical protein; SPTR: uncharacterized protein YP_004172543.1 COGs: COG3339 conserved hypothetical protein; InterPro IPR010652; KEGG: ddr:Deide_22170 hypothetical protein; PFAM: Protein of unknown function DUF1232; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1232) YP_004172544.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594: IPR003660; KEGG: dge:Dgeo_2344 periplasmic sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; SPTR: Periplasmic sensor signal transduction histidine kinase; PFAM: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004172545.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: ddr:Deide_23490 response regulator, OmpR; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: response regulator, OmpR; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004172546.1 KEGG: ddr:Deide_23480 conserved hypothetical protein, precursor; SPTR: uncharacterized protein YP_004172547.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593: IPR001140: IPR003439; KEGG: ddr:Deide_19840 ABC transporter, ATP-binding and permease component, precursor; membrane protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding and permease component,; membrane protein; PFAM: ABC transporter transmembrane region; ABC transporter YP_004172548.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593: IPR001140: IPR003439; KEGG: dra:DR_0096 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein, MsbA family; PFAM: ABC transporter transmembrane region; ABC transporter YP_004172549.1 KEGG: ami:Amir_4174 serine/threonine protein kinase; SPTR: Serine/threonine protein kinase YP_004172550.1 KEGG: dge:Dgeo_2265 metalloenzyme; SPTR: Metalloenzyme, phosphoglyceromutase related YP_004172551.1 KEGG: dge:Dgeo_2311 hypothetical protein; SPTR: uncharacterized protein YP_004172552.1 KEGG: fri:FraEuI1c_5572 hypothetical protein; SPTR: uncharacterized protein YP_004172553.1 COGs: COG1233 phytoene dehydrogenase and related protein; InterPro IPR006076; KEGG: dge:Dgeo_2310 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; PFAM: Flavin containing amine oxidoreductase YP_004172554.1 COGs: COG2324 membrane protein; InterPro IPR007354; KEGG: dra:DR_0091 hypothetical protein; PFAM: Protein of unknown function DUF422; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF422) YP_004172555.1 COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: dra:DR_0090 hypothetical protein; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: uncharacterized protein; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_004172556.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dge:Dgeo_2307 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, family 2; PFAM: Glycosyl transferase family 2 YP_004172557.1 COGs: COG1233 phytoene dehydrogenase and related protein; InterPro IPR006076; KEGG: dra:DR_2250 methoxyneurosporene dehydrogenase; PFAM: FAD dependent oxidoreductase; SPTR: Methoxyneurosporene dehydrogenase; PFAM: FAD dependent oxidoreductase YP_004172558.1 COGs: COG2124 Cytochrome P450; InterPro IPR001128; KEGG: dra:DR_2473 cytochrome P450; PFAM: Cytochrome P450; SPTR: Cytochrome P450; PFAM: Cytochrome P450 YP_004172559.1 KEGG: gym:GYMC10_0688 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF664) YP_004172560.1 KEGG: dra:DR_2407 hypothetical protein; SPTR: uncharacterized protein; PFAM: Predicted membrane protein (DUF2231) YP_004172561.1 COGs: COG3380 NAD/FAD-dependent oxidoreductase; InterPro IPR003953; KEGG: tra:Trad_2750 amine oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: Amine oxidase; PFAM: FAD binding domain YP_004172562.1 COGs: COG0431 flavoprotein; InterPro IPR005025; KEGG: amd:AMED_9059 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; SPTR: NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase YP_004172563.1 COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR001453: IPR020817: IPR005110: IPR005111; KEGG: dge:Dgeo_1944 MoeA-like protein; PFAM: MoeA, N-terminal and linker domain; Molybdopterin binding; MoeA, C-terminal, domain IV; SMART: Molybdopterin binding; SPTR: MoeA-like protein, domain I and II; TIGRFAM: Molybdenum cofactor synthesis; PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain YP_004172564.1 COGs: COG4639 kinase; InterPro IPR004843; KEGG: nml:Namu_0942 bis(5'-nucleosyl)-tetraphosphatase(asymmetrical); PFAM: Metallo-dependent phosphatase; PRIAM: Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical); SPTR:Bis(5'-nucleosyl)-tetraphosphatase(Asymmetrica l); PFAM: Calcineurin-like phosphoesterase YP_004172565.1 KEGG: psl:Psta_0264 hypothetical protein; SPTR: uncharacterized protein YP_004172566.1 COGs: COG5018 Inhibitor of the KinA pathway to sporulation predicted exonuclease; InterPro IPR006055: IPR013520; KEGG: tcu:Tcur_1896 exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; SPTR: Exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease YP_004172567.1 COGs: COG3541 nucleotidyltransferase; InterPro IPR018775; KEGG: psl:Psta_2509 hypothetical protein; PFAM: Nucleotidyltransferase, predicted; SPTR: uncharacterized protein; PFAM: Predicted nucleotidyltransferase YP_004172568.1 COGs: COG3541 nucleotidyltransferase; InterPro IPR018775; KEGG: rba:RB9591 hypothetical protein; PFAM: Nucleotidyltransferase, predicted; SPTR: uncharacterized protein; PFAM: Predicted nucleotidyltransferase YP_004172569.1 InterPro IPR013217; KEGG: tcu:Tcur_1722 methyltransferase type 12; PFAM: Methyltransferase type 12; SPTR: Methyltransferase type 12; PFAM: Methyltransferase domain YP_004172570.1 KEGG: dra:DR_1936 hypothetical protein; SPTR: uncharacterized protein YP_004172571.1 COGs: COG0181 porphobilinogen deaminase; HAMAP: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; InterPro IPR000860: IPR022417: IPR022418; KEGG: dge:Dgeo_0093 porphobilinogen deaminase; PFAM: porphobilinogen deaminase, N-terminal; porphobilinogen deaminase, C-terminal domain; SPTR: porphobilinogen deaminase; TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; PFAM: porphobilinogen deaminase, C-terminal domain; porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase YP_004172572.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR020842: IPR002198; KEGG: ddr:Deide_13360 3-ketoacyl-ACP reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-ACP reductase; SMART: Polyketide synthase/Fatty acid synthase, KR; SPTR: short-chain dehydrogenase; 3-oxoacyl-[acyl-carrier protein] reductases; PFAM: short chain dehydrogenase YP_004172573.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: ddr:Deide_23430 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: cysteine desulfurase; PFAM: Aminotransferase class-V YP_004172574.1 COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692; KEGG: dge:Dgeo_0269 penicillin amidase; PFAM: Peptidase S45, penicillin amidase; SPTR: Penicillin amidase; PFAM: Penicillin amidase YP_004172575.1 InterPro IPR013229; KEGG: mrb:Mrub_0105 PEGA domain-containing protein; PFAM: PEGA; SPTR: PEGA domain protein; PFAM: PEGA domain YP_004172576.1 InterPro IPR006597; KEGG: dra:DR_0484 hypothetical protein; PFAM: Sel1-like; SPTR: uncharacterized protein YP_004172577.1 KEGG: dge:Dgeo_2287 AsnC family transcriptional regulator; SPTR: transcriptional regulator, AsnC family YP_004172578.1 COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006056: IPR006175; KEGG: dge:Dgeo_0230 YjgF-like protein protein; PFAM: Endoribonuclease L-PSP; SPTR: YjgF-like protein protein; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP YP_004172579.1 COGs: COG0631 Serine/threonine protein phosphatase; InterPro IPR001932: IPR014045; KEGG: dge:Dgeo_0229 protein serine/threonine phosphatases; PFAM: Protein phosphatase 2C, N-terminal; SMART: Protein phosphatase 2C-like; SPTR: Protein serine/threonine phosphatase; PFAM: Protein phosphatase 2C YP_004172580.1 InterPro IPR019196; KEGG: ddr:Deide_20920 hypothetical protein; PFAM: ABC-type uncharacterised transport system; SPTR: uncharacterized protein; PFAM: ABC-type uncharacterized transport system YP_004172581.1 InterPro IPR019587; KEGG: aba:Acid345_1846 hypothetical protein; PFAM: Polyketide cyclase/dehydrase; SPTR: uncharacterized protein; PFAM: Polyketide cyclase / dehydrase and lipid transport YP_004172582.1 COGs: COG0016 phenylalanyl-tRNA synthetase alpha subunit; HAMAP: phenylalanyl-tRNA synthetase alpha chain 1, bacterial; InterPro IPR004529: IPR022911: IPR004188: IPR002319; KEGG: ddr:Deide_20900 phenylalanyl-tRNA synthetase subunit alpha; PFAM: phenylalanyl-tRNA synthetase; phenylalanyl-tRNA synthetase, class II, N-terminal; SPTR: phenylalanyl-tRNA synthetase alpha chain; TIGRFAM: phenylalanyl-tRNA synthetase, class IIc, alpha subunit; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit YP_004172583.1 COGs: COG0072 phenylalanyl-tRNA synthetase beta subunit; HAMAP: phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; InterProIPR005146: IPR005147: IPR005121: IPR004532: IPR 002547; KEGG: dge:Dgeo_0224 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/B4 tRNA-binding domain; tRNA-binding domain; tRNA synthetase, B5; phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; SMART: B3/B4 tRNA-binding domain; tRNA synthetase, B5; phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; SPTR: phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; PFAM: tRNA synthetase B5 domain; Ferredoxin-fold anticodon binding domain; B3/4 domain; tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial YP_004172584.1 KEGG: ddr:Deide_1p01253 hypothetical protein; SPTR: uncharacterized protein YP_004172585.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: ddr:Deide_1p00996 peptidase M23; PFAM: Peptidase M23; SPTR: peptidase M23; PFAM: Peptidase family M23 YP_004172586.1 COGs: COG0784 FOG: CheY-like receiver; InterPro IPR001789; KEGG: ddr:Deide_19540 response regulator, CheY; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: response regulator, CheY; PFAM: Response regulator receiver domain YP_004172587.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: dge:Dgeo_2149 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004172588.1 COGs: COG0595 hydrolase of the metallo-beta-lactamase superfamily; InterPro IPR001279: IPR011108; KEGG: dge:Dgeo_2150 beta-lactamase-like protein; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like; SPTR: Beta-lactamase-like protein; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; TIGRFAM: conserved hypothetical protein YP_004172589.1 COGs: COG2720 Uncharacterized vancomycin resistance protein; InterPro IPR007391; KEGG: ddr:Deide_23370 VanW like protein, precursor; PFAM: Vancomycin resistance VanW; SPTR: VanW like protein,; PFAM: VanW like protein YP_004172590.1 COGs: COG1475 transcriptional regulator protein; InterPro IPR003115: IPR004437; KEGG: ddr:Deide_23380 chromosome partitioning protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; SPTR: chromosome partitioning protein; TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins YP_004172591.1 COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: ddr:Deide_23390 chromosome partitioning protein; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: chromosome partitioning protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004172592.1 COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; InterPro IPR003682; KEGG: tra:Trad_2993 glucose inhibited division protein; PFAM: rRNA small subunit methyltransferase G; SPTR: ribosomal RNA small subunit methyltransferase G; PFAM: rRNA small subunit methyltransferase G YP_004172593.1 COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; HAMAP: Glucose-inhibited division protein A; InterPro IPR004416: IPR002218; KEGG: ddr:Deide_23420 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: Glucose-inhibited division protein A-related; SPTR: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; TIGRFAM: Glucose-inhibited division protein A; PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A