-- dump date 20140619_053347 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 360115000001 SEQ_END SEQ_END NC_010115.1 37317 37317 DR NC_010115.1; contig end 37317..37317 Coxiella burnetii RSA 331 360115000002 SEQ_END SEQ_END NC_010117.1 2016427 2016427 DR NC_010117.1; contig end 2016427..2016427 Coxiella burnetii RSA 331 YP_001595779.1 CDS COXBURSA331_0001 NC_010115.1 91 381 D RHS repeat-containing protein 91..381 Coxiella burnetii RSA 331 5792640 YP_001595780.1 CDS COXBURSA331_0002 NC_010115.1 409 1629 R identified by match to protein family HMM PF00589; phage integrase family site specific recombinase complement(409..1629) Coxiella burnetii RSA 331 5792670 YP_001595781.1 CDS COXBURSA331_0004 NC_010115.1 1870 2034 D tyrosine recombinase domain-containing protein 1870..2034 Coxiella burnetii RSA 331 5792683 YP_001595782.1 CDS COXBURSA331_0005 NC_010115.1 2279 2794 R identified by match to protein family HMM PF05660; hypothetical protein complement(2279..2794) Coxiella burnetii RSA 331 5792676 YP_001595783.1 CDS COXBURSA331_0006 NC_010115.1 2968 3096 R identified by glimmer; putative; hypothetical protein complement(2968..3096) Coxiella burnetii RSA 331 5792667 YP_001595784.1 CDS COXBURSA331_0007 NC_010115.1 3373 3486 R identified by glimmer; putative; hypothetical protein complement(3373..3486) Coxiella burnetii RSA 331 5792668 YP_001595785.1 CDS COXBURSA331_0008 NC_010115.1 3452 4183 D identified by glimmer; putative; hypothetical protein 3452..4183 Coxiella burnetii RSA 331 5792637 YP_001595786.1 CDS COXBURSA331_0009 NC_010115.1 4215 4340 R identified by glimmer; putative; hypothetical protein complement(4215..4340) Coxiella burnetii RSA 331 5792678 YP_001595787.1 CDS COXBURSA331_0010 NC_010115.1 4569 4802 D identified by match to protein family HMM PF00646; F-box domain-containing protein 4569..4802 Coxiella burnetii RSA 331 5792677 YP_001595788.1 CDS COXBURSA331_0011 NC_010115.1 5258 5695 D identified by glimmer; putative; hypothetical protein 5258..5695 Coxiella burnetii RSA 331 5792679 YP_001595789.1 CDS COXBURSA331_0012 NC_010115.1 5719 6741 D identified by similarity to SP:P26688; hypothetical protein 5719..6741 Coxiella burnetii RSA 331 5792659 YP_001595790.1 CDS COXBURSA331_0013 NC_010115.1 6927 8642 D identified by glimmer; putative; hypothetical protein 6927..8642 Coxiella burnetii RSA 331 5792643 YP_001595791.1 CDS COXBURSA331_0014 NC_010115.1 8764 9615 R identified by glimmer; putative; hypothetical protein complement(8764..9615) Coxiella burnetii RSA 331 5792660 YP_001595792.1 CDS COXBURSA331_0015 NC_010115.1 9642 10694 R identified by glimmer; putative; hypothetical protein complement(9642..10694) Coxiella burnetii RSA 331 5792644 YP_001595793.1 CDS COXBURSA331_0016 NC_010115.1 11152 11463 D identified by glimmer; putative; hypothetical protein 11152..11463 Coxiella burnetii RSA 331 5792662 YP_001595794.1 CDS COXBURSA331_0017 NC_010115.1 11596 12297 R identified by glimmer; putative; hypothetical protein complement(11596..12297) Coxiella burnetii RSA 331 5792647 YP_001595795.1 CDS COXBURSA331_0018 NC_010115.1 12668 12781 R identified by glimmer; putative; hypothetical protein complement(12668..12781) Coxiella burnetii RSA 331 5792673 YP_001595796.1 CDS COXBURSA331_0019 NC_010115.1 12741 13184 D identified by glimmer; putative; hypothetical protein 12741..13184 Coxiella burnetii RSA 331 5792664 YP_001595797.1 CDS COXBURSA331_0021 NC_010115.1 13721 13834 D identified by glimmer; putative; hypothetical protein 13721..13834 Coxiella burnetii RSA 331 5792665 YP_001595798.1 CDS COXBURSA331_0022 NC_010115.1 13929 14159 D identified by glimmer; putative; hypothetical protein 13929..14159 Coxiella burnetii RSA 331 5792648 YP_001595799.1 CDS COXBURSA331_0023 NC_010115.1 14210 14344 D identified by glimmer; putative; hypothetical protein 14210..14344 Coxiella burnetii RSA 331 5792661 YP_001595800.1 CDS COXBURSA331_0024 NC_010115.1 14407 14748 R identified by match to protein family HMM PF01381; DNA-binding protein complement(14407..14748) Coxiella burnetii RSA 331 5792634 YP_001595801.1 CDS COXBURSA331_0025 NC_010115.1 14748 15113 R identified by match to protein family HMM PF06296; hypothetical protein complement(14748..15113) Coxiella burnetii RSA 331 5792674 YP_001595802.1 CDS COXBURSA331_0026 NC_010115.1 15200 15433 R identified by glimmer; putative; hypothetical protein complement(15200..15433) Coxiella burnetii RSA 331 5792663 YP_001595803.1 CDS COXBURSA331_0027 NC_010115.1 15490 17328 R putative protein traI complement(15490..17328) Coxiella burnetii RSA 331 5792650 YP_001595804.1 CDS COXBURSA331_0028 NC_010115.1 17280 17900 D identified by match to protein family HMM PF02592; hypothetical protein 17280..17900 Coxiella burnetii RSA 331 5792686 YP_001595805.1 CDS COXBURSA331_0030 NC_010115.1 18639 18821 D identified by glimmer; putative; hypothetical protein 18639..18821 Coxiella burnetii RSA 331 5792655 YP_001595806.1 CDS COXBURSA331_0031 NC_010115.1 18826 19179 D identified by glimmer; putative; hypothetical protein 18826..19179 Coxiella burnetii RSA 331 5792671 YP_001595807.1 CDS COXBURSA331_0032 NC_010115.1 19722 20255 R identified by match to protein family HMM PF00132; hexapeptide repeat-containing transferase complement(19722..20255) Coxiella burnetii RSA 331 5792651 YP_001595808.1 CDS COXBURSA331_0033 NC_010115.1 20584 21453 R identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB-like partition domain-containing protein complement(20584..21453) Coxiella burnetii RSA 331 5792658 YP_001595809.1 CDS COXBURSA331_0034 NC_010115.1 21646 21786 D identified by glimmer; putative; hypothetical protein 21646..21786 Coxiella burnetii RSA 331 5792654 YP_001595810.1 CDS COXBURSA331_0035 NC_010115.1 21817 23037 D identified by match to protein family HMM PF01656; putative protein sopA 21817..23037 Coxiella burnetii RSA 331 5792652 YP_001595811.1 CDS COXBURSA331_0036 NC_010115.1 23030 24034 D identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; putative repB protein 23030..24034 Coxiella burnetii RSA 331 5792656 YP_001595812.1 CDS COXBURSA331_0037 NC_010115.1 24063 25379 D identified by match to protein family HMM PF01051; initiator RepB protein 24063..25379 Coxiella burnetii RSA 331 5792646 YP_001595813.1 CDS COXBURSA331_0038 NC_010115.1 25470 26027 R hypothetical protein complement(25470..26027) Coxiella burnetii RSA 331 5792641 YP_001595814.1 CDS COXBURSA331_0039 NC_010115.1 26431 26889 D identified by match to protein family HMM PF01381; match to protein family HMM TIGR02612; mobile mystery protein A 26431..26889 Coxiella burnetii RSA 331 5792653 YP_001595815.1 CDS COXBURSA331_0040 NC_010115.1 26892 27026 D identified by glimmer; putative; hypothetical protein 26892..27026 Coxiella burnetii RSA 331 5792657 YP_001595816.1 CDS COXBURSA331_0043 NC_010115.1 27669 27782 R identified by glimmer; putative; hypothetical protein complement(27669..27782) Coxiella burnetii RSA 331 5792684 YP_001595817.1 CDS COXBURSA331_0045 NC_010115.1 27826 28032 D identified by glimmer; putative; hypothetical protein 27826..28032 Coxiella burnetii RSA 331 5792636 YP_001595818.1 CDS COXBURSA331_0046 NC_010115.1 28074 28643 D putative integrase 28074..28643 Coxiella burnetii RSA 331 5792645 YP_001595819.1 CDS COXBURSA331_0047 NC_010115.1 28898 29923 D hypothetical protein 28898..29923 Coxiella burnetii RSA 331 5792633 YP_001595820.1 CDS COXBURSA331_0048 NC_010115.1 30121 31206 R hypothetical protein complement(30121..31206) Coxiella burnetii RSA 331 5792685 YP_001595821.1 CDS COXBURSA331_0049 NC_010115.1 31205 31327 D identified by glimmer; putative; hypothetical protein 31205..31327 Coxiella burnetii RSA 331 5792666 YP_001595822.1 CDS COXBURSA331_0051 NC_010115.1 31896 32405 D identified by match to protein family HMM PF00877; NlpC/P60 domain-containing protein 31896..32405 Coxiella burnetii RSA 331 5792680 YP_001595823.1 CDS COXBURSA331_0052 NC_010115.1 32456 32683 D identified by glimmer; putative; hypothetical protein 32456..32683 Coxiella burnetii RSA 331 5792682 YP_001595901.1 CDS dnaA NC_010117.1 140 1495 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 140..1495 Coxiella burnetii RSA 331 5793287 YP_001595902.1 CDS dnaN NC_010117.1 1639 2748 D identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663; DNA polymerase III subunit beta 1639..2748 Coxiella burnetii RSA 331 5793953 YP_001595903.1 CDS recF NC_010117.1 2753 3826 D identified by match to protein family HMM PF02463; match to protein family HMM TIGR00611; DNA replication and repair protein RecF 2753..3826 Coxiella burnetii RSA 331 5794053 YP_001595904.1 CDS COXBURSA331_A0004 NC_010117.1 4005 4148 R identified by glimmer; putative; hypothetical protein complement(4005..4148) Coxiella burnetii RSA 331 5794818 YP_001595905.1 CDS gyrB NC_010117.1 4128 6554 D identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase subunit B 4128..6554 Coxiella burnetii RSA 331 5793527 YP_001595906.1 CDS COXBURSA331_A0007 NC_010117.1 6780 7799 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 6780..7799 Coxiella burnetii RSA 331 5794902 YP_001595907.1 CDS COXBURSA331_A0006 NC_010117.1 7796 8068 R identified by glimmer; putative; hypothetical protein complement(7796..8068) Coxiella burnetii RSA 331 5793726 YP_001595908.1 CDS hemD NC_010117.1 8215 9021 R identified by match to protein family HMM PF02602; uroporphyrinogen-III synthase complement(8215..9021) Coxiella burnetii RSA 331 5792879 YP_001595909.1 CDS COXBURSA331_A0009 NC_010117.1 9011 9328 R hypothetical protein complement(9011..9328) Coxiella burnetii RSA 331 5792810 YP_001595910.1 CDS aroD NC_010117.1 9338 10039 R identified by match to protein family HMM PF01487; match to protein family HMM TIGR01093; 3-dehydroquinate dehydratase complement(9338..10039) Coxiella burnetii RSA 331 5794859 YP_001595911.1 CDS hemC NC_010117.1 10039 10962 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(10039..10962) Coxiella burnetii RSA 331 5793322 YP_001595912.1 CDS COXBURSA331_A0012 NC_010117.1 10946 11848 R identified by match to protein family HMM PF01553; putative acyltransferase complement(10946..11848) Coxiella burnetii RSA 331 5793159 YP_001595913.1 CDS COXBURSA331_A0013 NC_010117.1 11884 12381 R identified by glimmer; putative; hypothetical protein complement(11884..12381) Coxiella burnetii RSA 331 5794875 YP_001595914.1 CDS COXBURSA331_A0014 NC_010117.1 12601 13083 R hypothetical protein complement(12601..13083) Coxiella burnetii RSA 331 5794841 YP_001595915.1 CDS COXBURSA331_A0015 NC_010117.1 13159 13569 D identified by match to protein family HMM PF01817; chorismate mutase family protein 13159..13569 Coxiella burnetii RSA 331 5793840 YP_001595916.1 CDS tdk NC_010117.1 13586 14176 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 13586..14176 Coxiella burnetii RSA 331 5794807 YP_001595917.1 CDS COXBURSA331_A0017 NC_010117.1 14177 14296 D identified by glimmer; putative; hypothetical protein 14177..14296 Coxiella burnetii RSA 331 5793051 YP_001595918.1 CDS COXBURSA331_A0018 NC_010117.1 14317 15657 D identified by match to protein family HMM PF07690; major facilitator family transporter 14317..15657 Coxiella burnetii RSA 331 5793184 YP_001595919.1 CDS COXBURSA331_A0019 NC_010117.1 15638 16996 D identified by match to protein family HMM PF07690; major facilitator family transporter 15638..16996 Coxiella burnetii RSA 331 5793320 YP_001595920.1 CDS COXBURSA331_A0020 NC_010117.1 17008 17835 D identified by match to protein family HMM PF01925; hypothetical protein 17008..17835 Coxiella burnetii RSA 331 5794049 YP_001595921.1 CDS COXBURSA331_A0021 NC_010117.1 17816 18454 D hypothetical protein 17816..18454 Coxiella burnetii RSA 331 5793371 YP_001595922.1 CDS COXBURSA331_A0022 NC_010117.1 18493 18789 R identified by glimmer; putative; hypothetical protein complement(18493..18789) Coxiella burnetii RSA 331 5793360 YP_001595923.1 CDS COXBURSA331_A0024 NC_010117.1 20560 21762 D identified by glimmer; putative; hypothetical protein 20560..21762 Coxiella burnetii RSA 331 5793606 YP_001595924.1 CDS COXBURSA331_A0025 NC_010117.1 21955 23271 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter 21955..23271 Coxiella burnetii RSA 331 5793607 YP_001595925.1 CDS COXBURSA331_A0026 NC_010117.1 23688 24665 D hypothetical protein 23688..24665 Coxiella burnetii RSA 331 5793637 YP_001595926.1 CDS COXBURSA331_A0028 NC_010117.1 25561 26274 R hypothetical protein complement(25561..26274) Coxiella burnetii RSA 331 5792713 YP_001595927.1 CDS uvrD NC_010117.1 26271 28433 R unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II complement(26271..28433) Coxiella burnetii RSA 331 5794896 YP_001595928.1 CDS COXBURSA331_A0030 NC_010117.1 28463 28582 D identified by glimmer; putative; hypothetical protein 28463..28582 Coxiella burnetii RSA 331 5794836 YP_001595929.1 CDS COXBURSA331_A0031 NC_010117.1 28817 29746 D identified by glimmer; putative; hypothetical protein 28817..29746 Coxiella burnetii RSA 331 5792863 YP_001595930.1 CDS COXBURSA331_A0032 NC_010117.1 30176 30619 D identified by glimmer; putative; hypothetical protein 30176..30619 Coxiella burnetii RSA 331 5794870 YP_001595931.1 CDS COXBURSA331_A0033 NC_010117.1 30565 31212 D identified by glimmer; putative; hypothetical protein 30565..31212 Coxiella burnetii RSA 331 5793905 YP_001595932.1 CDS trpS NC_010117.1 31244 32314 D identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233; tryptophanyl-tRNA synthetase 31244..32314 Coxiella burnetii RSA 331 5794860 YP_001595933.1 CDS metE NC_010117.1 32499 34826 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 32499..34826 Coxiella burnetii RSA 331 5794900 YP_001595934.1 CDS metF NC_010117.1 34844 35716 D identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase 34844..35716 Coxiella burnetii RSA 331 5794057 YP_001595935.1 CDS COXBURSA331_A0037 NC_010117.1 35795 35902 D identified by glimmer; putative; hypothetical protein 35795..35902 Coxiella burnetii RSA 331 5794848 YP_001595936.1 CDS COXBURSA331_A0038 NC_010117.1 36026 37807 R chitinase domain-containing protein complement(36026..37807) Coxiella burnetii RSA 331 5794819 YP_001595937.1 CDS COXBURSA331_A0039 NC_010117.1 37878 38162 R identified by glimmer; putative; hypothetical protein complement(37878..38162) Coxiella burnetii RSA 331 5793314 YP_001595938.1 CDS COXBURSA331_A0041 NC_010117.1 40136 40507 R sensory box protein complement(40136..40507) Coxiella burnetii RSA 331 5793316 YP_001595939.1 CDS COXBURSA331_A0042 NC_010117.1 40497 41825 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843; HlyD family type I secretion membrane fusion protein complement(40497..41825) Coxiella burnetii RSA 331 5794843 YP_001595940.1 CDS COXBURSA331_A0044 NC_010117.1 43932 44654 R identified by match to protein family HMM PF00005; putative protein export ABC transporter ATP-binding protein complement(43932..44654) Coxiella burnetii RSA 331 5793318 YP_001595941.1 CDS COXBURSA331_A0045 NC_010117.1 44679 45677 R hypothetical protein complement(44679..45677) Coxiella burnetii RSA 331 5794485 YP_001595942.1 CDS COXBURSA331_A0046 NC_010117.1 45676 45852 D identified by glimmer; putative; hypothetical protein 45676..45852 Coxiella burnetii RSA 331 5793226 YP_001595943.1 CDS COXBURSA331_A0047 NC_010117.1 45951 46472 R identified by glimmer; putative; hypothetical protein complement(45951..46472) Coxiella burnetii RSA 331 5793680 YP_001595944.1 CDS COXBURSA331_A0049 NC_010117.1 46484 46687 D identified by glimmer; putative; hypothetical protein 46484..46687 Coxiella burnetii RSA 331 5794815 YP_001595945.1 CDS COXBURSA331_A0048 NC_010117.1 46646 47137 R identified by glimmer; putative; hypothetical protein complement(46646..47137) Coxiella burnetii RSA 331 5793007 YP_001595946.1 CDS COXBURSA331_A0050 NC_010117.1 47308 47424 R identified by glimmer; putative; hypothetical protein complement(47308..47424) Coxiella burnetii RSA 331 5792998 YP_001595947.1 CDS ahcY NC_010117.1 48334 49638 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(48334..49638) Coxiella burnetii RSA 331 5794491 YP_001595948.1 CDS metK NC_010117.1 49652 50833 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(49652..50833) Coxiella burnetii RSA 331 5794137 YP_001595949.1 CDS COXBURSA331_A0054 NC_010117.1 50971 51603 D identified by glimmer; putative; hypothetical protein 50971..51603 Coxiella burnetii RSA 331 5794885 YP_001595950.1 CDS COXBURSA331_A0056 NC_010117.1 51697 52443 D identified by glimmer; putative; hypothetical protein 51697..52443 Coxiella burnetii RSA 331 5793464 YP_001595951.1 CDS COXBURSA331_A0057 NC_010117.1 52652 52939 D identified by glimmer; putative; hypothetical protein 52652..52939 Coxiella burnetii RSA 331 5792862 YP_001595952.1 CDS COXBURSA331_A0058 NC_010117.1 53162 54325 R identified by match to protein family HMM PF01053; match to protein family HMM PF01212; putative O-succinylhomoserine (thiol)-lyase complement(53162..54325) Coxiella burnetii RSA 331 5792968 YP_001595953.1 CDS COXBURSA331_A0059 NC_010117.1 54404 55354 R identified by match to protein family HMM PF00291; putative cystathionine beta-synthase complement(54404..55354) Coxiella burnetii RSA 331 5794455 YP_001595954.1 CDS COXBURSA331_A0060 NC_010117.1 55432 55677 D identified by match to protein family HMM PF04380; hypothetical protein 55432..55677 Coxiella burnetii RSA 331 5794833 YP_001595955.1 CDS COXBURSA331_A0062 NC_010117.1 57269 58531 D putative ATPase 57269..58531 Coxiella burnetii RSA 331 5793997 YP_001595956.1 CDS COXBURSA331_A0063 NC_010117.1 58611 60023 D identified by match to protein family HMM PF00324; amino acid antiporter 58611..60023 Coxiella burnetii RSA 331 5792936 YP_001595957.1 CDS COXBURSA331_A0064 NC_010117.1 60078 60212 D identified by glimmer; putative; hypothetical protein 60078..60212 Coxiella burnetii RSA 331 5793925 YP_001595958.1 CDS ubiB NC_010117.1 60428 62053 R identified by match to protein family HMM PF03109; match to protein family HMM TIGR01982; 2-polyprenylphenol 6-hydroxylase complement(60428..62053) Coxiella burnetii RSA 331 5794850 YP_001595959.1 CDS COXBURSA331_A0066 NC_010117.1 62050 62664 R identified by match to protein family HMM PF06843; hypothetical protein complement(62050..62664) Coxiella burnetii RSA 331 5794487 YP_001595960.1 CDS ubiE NC_010117.1 62664 63416 R identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR01934; ubiquinone/menaquinone biosynthesis methyltransferase ubiE complement(62664..63416) Coxiella burnetii RSA 331 5792709 YP_001595961.1 CDS COXBURSA331_A0068 NC_010117.1 63496 64083 R identified by glimmer; putative; hypothetical protein complement(63496..64083) Coxiella burnetii RSA 331 5793585 YP_001595962.1 CDS COXBURSA331_A0071 NC_010117.1 65772 66251 R hypothetical protein complement(65772..66251) Coxiella burnetii RSA 331 5793326 YP_001595963.1 CDS COXBURSA331_A0073 NC_010117.1 66479 67576 D identified by glimmer; putative; hypothetical protein 66479..67576 Coxiella burnetii RSA 331 5794864 YP_001595964.1 CDS hslU NC_010117.1 67530 68873 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(67530..68873) Coxiella burnetii RSA 331 5793532 YP_001595965.1 CDS hslV NC_010117.1 68952 69497 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(68952..69497) Coxiella burnetii RSA 331 5794883 YP_001595966.1 CDS COXBURSA331_A0075 NC_010117.1 69757 69927 R identified by glimmer; putative; hypothetical protein complement(69757..69927) Coxiella burnetii RSA 331 5793711 YP_001595967.1 CDS COXBURSA331_A0076 NC_010117.1 70068 71384 R identified by glimmer; putative; hypothetical protein complement(70068..71384) Coxiella burnetii RSA 331 5793443 YP_001595968.1 CDS argS NC_010117.1 71399 73159 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(71399..73159) Coxiella burnetii RSA 331 5794048 YP_001595969.1 CDS COXBURSA331_A0078 NC_010117.1 73323 74510 D identified by glimmer; putative; hypothetical protein 73323..74510 Coxiella burnetii RSA 331 5794844 YP_001595970.1 CDS COXBURSA331_A0079 NC_010117.1 74557 75294 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulatory protein 74557..75294 Coxiella burnetii RSA 331 5793580 YP_001595971.1 CDS COXBURSA331_A0080 NC_010117.1 75291 76568 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 75291..76568 Coxiella burnetii RSA 331 5792695 YP_001595972.1 CDS COXBURSA331_A0081 NC_010117.1 76576 77631 D identified by match to protein family HMM PF01075; heptosyltransferase family protein 76576..77631 Coxiella burnetii RSA 331 5793719 YP_001595973.1 CDS COXBURSA331_A0082 NC_010117.1 77709 77840 R identified by glimmer; putative; hypothetical protein complement(77709..77840) Coxiella burnetii RSA 331 5792702 YP_001595974.1 CDS COXBURSA331_A0083 NC_010117.1 78292 78852 R identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein complement(78292..78852) Coxiella burnetii RSA 331 5793293 YP_001595975.1 CDS purE NC_010117.1 78855 79355 R identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(78855..79355) Coxiella burnetii RSA 331 5793446 YP_001595976.1 CDS COXBURSA331_A0085 NC_010117.1 79397 79549 R identified by glimmer; putative; hypothetical protein complement(79397..79549) Coxiella burnetii RSA 331 5793185 YP_001595977.1 CDS topA NC_010117.1 79563 81860 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining; maintains net negative superhelicity; DNA topoisomerase I complement(79563..81860) Coxiella burnetii RSA 331 5793169 YP_001595978.1 CDS COXBURSA331_A0087 NC_010117.1 81863 82339 R identified by match to protein family HMM PF04361; hypothetical protein complement(81863..82339) Coxiella burnetii RSA 331 5794085 YP_001595979.1 CDS dprA NC_010117.1 82339 83229 R identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA complement(82339..83229) Coxiella burnetii RSA 331 5793436 YP_001595980.1 CDS COXBURSA331_A0089 NC_010117.1 83260 83376 D identified by glimmer; putative; hypothetical protein 83260..83376 Coxiella burnetii RSA 331 5794445 YP_001595981.1 CDS fmt NC_010117.1 83453 84397 D identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 83453..84397 Coxiella burnetii RSA 331 5793045 YP_001595982.1 CDS COXBURSA331_A0092 NC_010117.1 84410 84964 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 84410..84964 Coxiella burnetii RSA 331 5794879 YP_001595983.1 CDS COXBURSA331_A0091 NC_010117.1 84940 85227 R catalyzes the hydrolysis of acylphosphate; acylphosphatase complement(84940..85227) Coxiella burnetii RSA 331 5794834 YP_001595984.1 CDS COXBURSA331_A0093 NC_010117.1 85230 85349 R identified by glimmer; putative; hypothetical protein complement(85230..85349) Coxiella burnetii RSA 331 5794890 YP_001595985.1 CDS COXBURSA331_A0094 NC_010117.1 85447 86226 D identified by match to protein family HMM PF02677; hypothetical protein 85447..86226 Coxiella burnetii RSA 331 5792712 YP_001595986.1 CDS folA NC_010117.1 86223 86708 D identified by match to protein family HMM PF00186; dihydrofolate reductase 86223..86708 Coxiella burnetii RSA 331 5794846 YP_001595987.1 CDS apaH NC_010117.1 86888 87763 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(86888..87763) Coxiella burnetii RSA 331 5793140 YP_001595988.1 CDS sppA NC_010117.1 87776 88717 R identified by match to protein family HMM PF01343; signal peptide peptidase SppA, 36K type complement(87776..88717) Coxiella burnetii RSA 331 5793344 YP_001595989.1 CDS COXBURSA331_A0099 NC_010117.1 88781 89266 R identified by glimmer; putative; hypothetical protein complement(88781..89266) Coxiella burnetii RSA 331 5794067 YP_001595990.1 CDS COXBURSA331_A0100 NC_010117.1 89343 89459 D identified by glimmer; putative; hypothetical protein 89343..89459 Coxiella burnetii RSA 331 5794872 YP_001595991.1 CDS COXBURSA331_A0101 NC_010117.1 89524 89898 R identified by glimmer; putative; hypothetical protein complement(89524..89898) Coxiella burnetii RSA 331 5793313 YP_001595992.1 CDS COXBURSA331_A0102 NC_010117.1 90067 90501 R identified by match to protein family HMM PF00582; universal stress protein family protein complement(90067..90501) Coxiella burnetii RSA 331 5794863 YP_001595993.1 CDS ksgA NC_010117.1 90614 91390 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(90614..91390) Coxiella burnetii RSA 331 5793577 YP_001595994.1 CDS pdxA NC_010117.1 91542 92465 R identified by match to protein family HMM PF04166; match to protein family HMM TIGR00557; 4-hydroxythreonine-4-phosphate dehydrogenase complement(91542..92465) Coxiella burnetii RSA 331 5793915 YP_001595995.1 CDS COXBURSA331_A0105 NC_010117.1 92465 93430 R identified by match to protein family HMM PF00639; match to protein family HMM PF09312; putative peptidyl-prolyl cis-trans isomerase surA complement(92465..93430) Coxiella burnetii RSA 331 5793801 YP_001595996.1 CDS ostA NC_010117.1 93436 96048 R identified by match to protein family HMM PF04453; organic solvent tolerance protein complement(93436..96048) Coxiella burnetii RSA 331 5793072 YP_001595997.1 CDS COXBURSA331_A0107 NC_010117.1 96138 97127 D identified by match to protein family HMM PF01636; phosphotransferase enzyme family protein 96138..97127 Coxiella burnetii RSA 331 5793642 YP_001595998.1 CDS COXBURSA331_A0109 NC_010117.1 97133 97792 D identified by match to protein family HMM PF00483; nucleotidyl transferase family protein 97133..97792 Coxiella burnetii RSA 331 5793452 YP_001595999.1 CDS COXBURSA331_A0108 NC_010117.1 97772 98440 R identified by match to protein family HMM PF02230; phospholipase/carboxylesterase family protein complement(97772..98440) Coxiella burnetii RSA 331 5793018 YP_001596000.1 CDS COXBURSA331_A0110 NC_010117.1 98598 98738 D identified by glimmer; putative; hypothetical protein 98598..98738 Coxiella burnetii RSA 331 5792974 YP_001596001.1 CDS COXBURSA331_A0112 NC_010117.1 99211 99333 D identified by glimmer; putative; hypothetical protein 99211..99333 Coxiella burnetii RSA 331 5794481 YP_001596002.1 CDS dapF NC_010117.1 99323 100153 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 99323..100153 Coxiella burnetii RSA 331 5793437 YP_001596003.1 CDS dksA NC_010117.1 100295 100738 D identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420; RNA polymerase-binding protein DksA 100295..100738 Coxiella burnetii RSA 331 5792840 YP_001596004.1 CDS folB NC_010117.1 100731 101084 D identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526; dihydroneopterin aldolase 100731..101084 Coxiella burnetii RSA 331 5794901 YP_001596005.1 CDS COXBURSA331_A0115 NC_010117.1 101062 102237 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; Bcr/CflA subfamily drug resistance transporter complement(101062..102237) Coxiella burnetii RSA 331 5794795 YP_001596006.1 CDS COXBURSA331_A0117 NC_010117.1 102238 102366 D identified by glimmer; putative; hypothetical protein 102238..102366 Coxiella burnetii RSA 331 5794750 YP_001596007.1 CDS hemA NC_010117.1 102368 103609 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 102368..103609 Coxiella burnetii RSA 331 5793786 YP_001596008.1 CDS prfA NC_010117.1 103606 104691 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 103606..104691 Coxiella burnetii RSA 331 5793956 YP_001596009.1 CDS hemK NC_010117.1 104694 105527 D identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387; protein methyltransferase HemK 104694..105527 Coxiella burnetii RSA 331 5794732 YP_001596010.1 CDS COXBURSA331_A0120 NC_010117.1 105498 107399 R identified by glimmer; putative; hypothetical protein complement(105498..107399) Coxiella burnetii RSA 331 5794441 YP_001596011.1 CDS COXBURSA331_A0122 NC_010117.1 107469 107609 R identified by glimmer; putative; hypothetical protein complement(107469..107609) Coxiella burnetii RSA 331 5793675 YP_001596012.1 CDS COXBURSA331_A0124 NC_010117.1 107779 108798 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 107779..108798 Coxiella burnetii RSA 331 5793550 YP_001596013.1 CDS COXBURSA331_A0123 NC_010117.1 108795 109067 R identified by glimmer; putative; hypothetical protein complement(108795..109067) Coxiella burnetii RSA 331 5793857 YP_001596014.1 CDS COXBURSA331_A0125 NC_010117.1 109074 109190 D identified by glimmer; putative; hypothetical protein 109074..109190 Coxiella burnetii RSA 331 5793557 YP_001596015.1 CDS COXBURSA331_A0126 NC_010117.1 109357 109569 D identified by match to protein family HMM TIGR02449; hypothetical protein 109357..109569 Coxiella burnetii RSA 331 5794032 YP_001596016.1 CDS COXBURSA331_A0127 NC_010117.1 109566 109889 D identified by match to protein family HMM PF05164; hypothetical protein 109566..109889 Coxiella burnetii RSA 331 5794772 YP_001596017.1 CDS COXBURSA331_A0129 NC_010117.1 110107 110691 D identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5,10-methenyltetrahydrofolate synthetase 110107..110691 Coxiella burnetii RSA 331 5794705 YP_001596018.1 CDS COXBURSA331_A0128 NC_010117.1 110688 111032 R hypothetical protein complement(110688..111032) Coxiella burnetii RSA 331 5794588 YP_001596019.1 CDS COXBURSA331_A0130 NC_010117.1 111083 111457 R identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein complement(111083..111457) Coxiella burnetii RSA 331 5793809 YP_001596020.1 CDS COXBURSA331_A0131 NC_010117.1 111438 111599 R identified by glimmer; putative; hypothetical protein complement(111438..111599) Coxiella burnetii RSA 331 5794603 YP_001596021.1 CDS parE NC_010117.1 111646 113556 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(111646..113556) Coxiella burnetii RSA 331 5793257 YP_001596022.1 CDS COXBURSA331_A0134 NC_010117.1 113689 114963 D identified by match to protein family HMM PF00534; match to protein family HMM PF04413; 3-deoxy-D-manno-octulosonic-acid transferase family protein 113689..114963 Coxiella burnetii RSA 331 5794587 YP_001596023.1 CDS COXBURSA331_A0133 NC_010117.1 114949 116457 R identified by match to protein family HMM PF00226; DnaJ domain-containing protein complement(114949..116457) Coxiella burnetii RSA 331 5792991 YP_001596024.1 CDS COXBURSA331_A0135 NC_010117.1 116478 117716 R identified by glimmer; putative; hypothetical protein complement(116478..117716) Coxiella burnetii RSA 331 5794778 YP_001596025.1 CDS COXBURSA331_A0136 NC_010117.1 117734 118093 R identified by glimmer; putative; hypothetical protein complement(117734..118093) Coxiella burnetii RSA 331 5793628 YP_001596026.1 CDS COXBURSA331_A0137 NC_010117.1 118235 118360 R identified by glimmer; putative; hypothetical protein complement(118235..118360) Coxiella burnetii RSA 331 5793782 YP_001596027.1 CDS COXBURSA331_A0138 NC_010117.1 118471 118599 R identified by glimmer; putative; hypothetical protein complement(118471..118599) Coxiella burnetii RSA 331 5793549 YP_001596028.1 CDS COXBURSA331_A0139 NC_010117.1 118647 120497 R identified by match to protein family HMM PF02321; match to protein family HMM PF05036; match to protein family HMM TIGR01844; TolC family type I secretion outer membrane protein complement(118647..120497) Coxiella burnetii RSA 331 5793696 YP_001596029.1 CDS ubiA NC_010117.1 120609 121472 R identified by match to protein family HMM PF01040; match to protein family HMM TIGR01474; 4-hydroxybenzoate polyprenyltransferase complement(120609..121472) Coxiella burnetii RSA 331 5794791 YP_001596030.1 CDS COXBURSA331_A0141 NC_010117.1 121465 122022 R identified by match to protein family HMM PF04345; putative chorismate--pyruvate lyase complement(121465..122022) Coxiella burnetii RSA 331 5794781 YP_001596031.1 CDS COXBURSA331_A0142 NC_010117.1 122092 122790 R identified by match to protein family HMM PF03734; putative enhanced entry protein EnhA complement(122092..122790) Coxiella burnetii RSA 331 5794606 YP_001596032.1 CDS COXBURSA331_A0143 NC_010117.1 122974 123534 D identified by glimmer; putative; hypothetical protein 122974..123534 Coxiella burnetii RSA 331 5794454 YP_001596033.1 CDS COXBURSA331_A0144 NC_010117.1 123559 124161 D identified by glimmer; putative; hypothetical protein 123559..124161 Coxiella burnetii RSA 331 5793266 YP_001596034.1 CDS COXBURSA331_A0145 NC_010117.1 124354 125664 D identified by glimmer; putative; hypothetical protein 124354..125664 Coxiella burnetii RSA 331 5792964 YP_001596035.1 CDS COXBURSA331_A0146 NC_010117.1 125718 126698 D identified by match to protein family HMM PF00529; auxiliary membrane fusion protein family transporter 125718..126698 Coxiella burnetii RSA 331 5793271 YP_001596036.1 CDS COXBURSA331_A0147 NC_010117.1 126691 127620 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 126691..127620 Coxiella burnetii RSA 331 5793519 YP_001596037.1 CDS COXBURSA331_A0150 NC_010117.1 128798 129358 D putative lipoprotein 128798..129358 Coxiella burnetii RSA 331 5792706 YP_001596038.1 CDS COXBURSA331_A0151 NC_010117.1 129455 130207 R identified by glimmer; putative; hypothetical protein complement(129455..130207) Coxiella burnetii RSA 331 5794547 YP_001596039.1 CDS COXBURSA331_A0152 NC_010117.1 130317 130919 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase complement(130317..130919) Coxiella burnetii RSA 331 5793520 YP_001596040.1 CDS hemH NC_010117.1 130982 132007 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 130982..132007 Coxiella burnetii RSA 331 5793522 YP_001596041.1 CDS COXBURSA331_A0156 NC_010117.1 134346 134618 D identified by glimmer; putative; hypothetical protein 134346..134618 Coxiella burnetii RSA 331 5793946 YP_001596042.1 CDS COXBURSA331_A0155 NC_010117.1 134615 135634 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A complement(134615..135634) Coxiella burnetii RSA 331 5793944 YP_001596043.1 CDS COXBURSA331_A0157 NC_010117.1 135876 136187 D ankyrin repeat-containing protein 135876..136187 Coxiella burnetii RSA 331 5794299 YP_001596044.1 CDS COXBURSA331_A0158 NC_010117.1 136196 137044 D identified by glimmer; putative; hypothetical protein 136196..137044 Coxiella burnetii RSA 331 5794429 YP_001596045.1 CDS COXBURSA331_A0160 NC_010117.1 138075 139274 D ankyrin repeat-containing protein 138075..139274 Coxiella burnetii RSA 331 5794011 YP_001596046.1 CDS COXBURSA331_A0161 NC_010117.1 139364 141157 R identified by match to protein family HMM PF00557; match to protein family HMM PF01321; M24 family peptidase complement(139364..141157) Coxiella burnetii RSA 331 5793561 YP_001596047.1 CDS ubiH NC_010117.1 141465 142697 D identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01984; match to protein family HMM TIGR01988; 2-polyprenyl-6-methoxyphenol 4-hydroxylase 141465..142697 Coxiella burnetii RSA 331 5793243 YP_001596048.1 CDS COXBURSA331_A0164 NC_010117.1 142687 143922 D identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 142687..143922 Coxiella burnetii RSA 331 5793285 YP_001596049.1 CDS COXBURSA331_A0165 NC_010117.1 144037 144828 D identified by glimmer; putative; hypothetical protein 144037..144828 Coxiella burnetii RSA 331 5794722 YP_001596050.1 CDS COXBURSA331_A0166 NC_010117.1 144863 145012 R identified by glimmer; putative; hypothetical protein complement(144863..145012) Coxiella burnetii RSA 331 5793697 YP_001596051.1 CDS proS NC_010117.1 146035 147729 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 146035..147729 Coxiella burnetii RSA 331 5793272 YP_001596052.1 CDS COXBURSA331_A0169 NC_010117.1 147786 147977 R putative lipoprotein complement(147786..147977) Coxiella burnetii RSA 331 5794752 YP_001596053.1 CDS COXBURSA331_A0170 NC_010117.1 148112 150019 D identified by match to protein family HMM PF00884; sulfatase 148112..150019 Coxiella burnetii RSA 331 5793916 YP_001596054.1 CDS ecnB NC_010117.1 150273 150428 D identified by match to protein family HMM PF08085; entericidin B 150273..150428 Coxiella burnetii RSA 331 5794567 YP_001596055.1 CDS COXBURSA331_A0172 NC_010117.1 150439 151197 D identified by match to protein family HMM PF04909; amidohydrolase family protein 150439..151197 Coxiella burnetii RSA 331 5793535 YP_001596056.1 CDS COXBURSA331_A0173 NC_010117.1 151239 153155 D identified by match to protein family HMM PF00884; sulfatase 151239..153155 Coxiella burnetii RSA 331 5793615 YP_001596057.1 CDS COXBURSA331_A0174 NC_010117.1 153324 154145 D identified by match to protein family HMM PF06519; match to protein family HMM TIGR02794; protein TolA 153324..154145 Coxiella burnetii RSA 331 5794613 YP_001596058.1 CDS tolB NC_010117.1 154965 156278 D identified by match to protein family HMM PF04052; match to protein family HMM PF07676; match to protein family HMM TIGR02800; TolB protein 154965..156278 Coxiella burnetii RSA 331 5794625 YP_001596059.1 CDS COXBURSA331_A0176 NC_010117.1 156327 156875 D identified by match to protein family HMM PF00691; putative peptidoglycan-associated lipoprotein 156327..156875 Coxiella burnetii RSA 331 5794765 YP_001596060.1 CDS ygbF NC_010117.1 156877 157779 D identified by match to protein family HMM PF07719; match to protein family HMM TIGR02795; tol-pal system protein YbgF 156877..157779 Coxiella burnetii RSA 331 5794780 YP_001596061.1 CDS COXBURSA331_A0178 NC_010117.1 157782 158423 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 157782..158423 Coxiella burnetii RSA 331 5793088 YP_001596062.1 CDS clpB NC_010117.1 158736 161315 D identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346; ATP-dependent chaperone ClpB 158736..161315 Coxiella burnetii RSA 331 5794753 YP_001596063.1 CDS COXBURSA331_A0181 NC_010117.1 161318 162280 D identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367; sodium/calcium antiporter family protein 161318..162280 Coxiella burnetii RSA 331 5794904 YP_001596064.1 CDS COXBURSA331_A0180 NC_010117.1 162264 163439 R identified by match to protein family HMM PF00614; putative cardiolipin synthetase complement(162264..163439) Coxiella burnetii RSA 331 5793531 YP_001596065.1 CDS COXBURSA331_A0182 NC_010117.1 163439 163723 R hypothetical protein complement(163439..163723) Coxiella burnetii RSA 331 5794004 YP_001596066.1 CDS pssA NC_010117.1 163901 164665 D identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase 163901..164665 Coxiella burnetii RSA 331 5793548 YP_001596067.1 CDS nadC NC_010117.1 164665 165489 D identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 164665..165489 Coxiella burnetii RSA 331 5794707 YP_001596068.1 CDS COXBURSA331_A0185 NC_010117.1 165504 165665 D identified by glimmer; putative; hypothetical protein 165504..165665 Coxiella burnetii RSA 331 5792751 YP_001596069.1 CDS sixA NC_010117.1 166160 166633 D identified by match to protein family HMM PF00300; match to protein family HMM TIGR00249; phosphohistidine phosphatase SixA 166160..166633 Coxiella burnetii RSA 331 5793556 YP_001596070.1 CDS COXBURSA331_A0190 NC_010117.1 166635 167036 D putative lipoprotein 166635..167036 Coxiella burnetii RSA 331 5793762 YP_001596071.1 CDS nadB NC_010117.1 166990 168600 R identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR00551; L-aspartate oxidase complement(166990..168600) Coxiella burnetii RSA 331 5793906 YP_001596072.1 CDS COXBURSA331_A0191 NC_010117.1 168721 168834 R identified by glimmer; putative; hypothetical protein complement(168721..168834) Coxiella burnetii RSA 331 5794908 YP_001596073.1 CDS COXBURSA331_A0192 NC_010117.1 168869 170311 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; M20/M25/M40 family peptidase complement(168869..170311) Coxiella burnetii RSA 331 5793292 YP_001596074.1 CDS COXBURSA331_A0193 NC_010117.1 170389 171102 R identified by glimmer; putative; hypothetical protein complement(170389..171102) Coxiella burnetii RSA 331 5794448 YP_001596075.1 CDS metN NC_010117.1 172500 173555 D identified by match to protein family HMM PF00005; D-methionine ABC transporter ATP-binding protein 172500..173555 Coxiella burnetii RSA 331 5794449 YP_001596076.1 CDS metI NC_010117.1 173524 174180 D identified by match to protein family HMM PF00528; D-methionine ABC transporter permease 173524..174180 Coxiella burnetii RSA 331 5794139 YP_001596077.1 CDS metQ NC_010117.1 174192 174995 D identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363; D-methionine ABC transporter periplasmic D-methionine-binding protein 174192..174995 Coxiella burnetii RSA 331 5793130 YP_001596078.1 CDS COXBURSA331_A0198 NC_010117.1 175006 175356 R identified by glimmer; putative; hypothetical protein complement(175006..175356) Coxiella burnetii RSA 331 5793681 YP_001596079.1 CDS kbl NC_010117.1 175896 177086 D catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 175896..177086 Coxiella burnetii RSA 331 5794028 YP_001596080.1 CDS tdh NC_010117.1 177128 178156 D converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 177128..178156 Coxiella burnetii RSA 331 5793929 YP_001596081.1 CDS COXBURSA331_A0202 NC_010117.1 178192 178404 R identified by glimmer; putative; hypothetical protein complement(178192..178404) Coxiella burnetii RSA 331 5794716 YP_001596082.1 CDS COXBURSA331_A0203 NC_010117.1 178557 179039 D putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 178557..179039 Coxiella burnetii RSA 331 5794715 YP_001596083.1 CDS mraZ NC_010117.1 179222 179680 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 179222..179680 Coxiella burnetii RSA 331 5794717 YP_001596084.1 CDS mraW NC_010117.1 179686 180609 D identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 179686..180609 Coxiella burnetii RSA 331 5794786 YP_001596085.1 CDS ftsL NC_010117.1 180606 180953 D identified by match to protein family HMM PF04999; match to protein family HMM TIGR02209; cell division protein FtsL 180606..180953 Coxiella burnetii RSA 331 5794564 YP_001596086.1 CDS COXBURSA331_A0207 NC_010117.1 180958 182604 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 180958..182604 Coxiella burnetii RSA 331 5793779 YP_001596087.1 CDS COXBURSA331_A0208 NC_010117.1 182609 183718 R identified by glimmer; putative; hypothetical protein complement(182609..183718) Coxiella burnetii RSA 331 5794453 YP_001596088.1 CDS COXBURSA331_A0209 NC_010117.1 183715 183828 R identified by glimmer; putative; hypothetical protein complement(183715..183828) Coxiella burnetii RSA 331 5794782 YP_001596089.1 CDS COXBURSA331_A0210 NC_010117.1 183897 184016 R identified by glimmer; putative; hypothetical protein complement(183897..184016) Coxiella burnetii RSA 331 5793885 YP_001596090.1 CDS COXBURSA331_A0211 NC_010117.1 184114 184245 R identified by glimmer; putative; hypothetical protein complement(184114..184245) Coxiella burnetii RSA 331 5794679 YP_001596091.1 CDS COXBURSA331_A0212 NC_010117.1 184257 184535 D identified by glimmer; putative; hypothetical protein 184257..184535 Coxiella burnetii RSA 331 5794785 YP_001596092.1 CDS murE NC_010117.1 184586 186055 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 184586..186055 Coxiella burnetii RSA 331 5794682 YP_001596093.1 CDS murF NC_010117.1 186052 187392 D identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 186052..187392 Coxiella burnetii RSA 331 5794744 YP_001596094.1 CDS mraY NC_010117.1 187397 188482 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 187397..188482 Coxiella burnetii RSA 331 5793341 YP_001596095.1 CDS COXBURSA331_A0215 NC_010117.1 188475 188600 R identified by glimmer; putative; hypothetical protein complement(188475..188600) Coxiella burnetii RSA 331 5794724 YP_001596096.1 CDS COXBURSA331_A0217 NC_010117.1 188654 188773 D identified by glimmer; putative; hypothetical protein 188654..188773 Coxiella burnetii RSA 331 5794756 YP_001596097.1 CDS COXBURSA331_A0218 NC_010117.1 188856 189836 D identified by glimmer; putative; hypothetical protein 188856..189836 Coxiella burnetii RSA 331 5794757 YP_001596098.1 CDS COXBURSA331_A0219 NC_010117.1 189808 190155 D identified by glimmer; putative; hypothetical protein 189808..190155 Coxiella burnetii RSA 331 5792827 YP_001596099.1 CDS murD NC_010117.1 190507 191835 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 190507..191835 Coxiella burnetii RSA 331 5793792 YP_001596100.1 CDS ftsW NC_010117.1 191835 192953 D identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; cell division protein FtsW 191835..192953 Coxiella burnetii RSA 331 5792958 YP_001596101.1 CDS COXBURSA331_A2229 NC_010117.1 193005 193871 D identified by glimmer; putative; hypothetical protein 193005..193871 Coxiella burnetii RSA 331 5792959 YP_001596102.1 CDS COXBURSA331_A0223 NC_010117.1 193904 194491 D identified by glimmer; putative; hypothetical protein 193904..194491 Coxiella burnetii RSA 331 5794748 YP_001596103.1 CDS murG NC_010117.1 194541 195617 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 194541..195617 Coxiella burnetii RSA 331 5793275 YP_001596104.1 CDS murC NC_010117.1 195604 197001 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 195604..197001 Coxiella burnetii RSA 331 5794899 YP_001596105.1 CDS murB NC_010117.1 196994 197944 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 196994..197944 Coxiella burnetii RSA 331 5794884 YP_001596106.1 CDS ftsQ NC_010117.1 197944 198675 D identified by match to protein family HMM PF03799; match to protein family HMM PF08478; cell division protein FtsQ 197944..198675 Coxiella burnetii RSA 331 5794700 YP_001596107.1 CDS COXBURSA331_A0227 NC_010117.1 198672 199292 R identified by match to protein family HMM PF00484; carbonate dehydratase complement(198672..199292) Coxiella burnetii RSA 331 5794701 YP_001596108.1 CDS ftsA NC_010117.1 199483 200715 D identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 199483..200715 Coxiella burnetii RSA 331 5794702 YP_001596109.1 CDS ftsZ NC_010117.1 200737 201897 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 200737..201897 Coxiella burnetii RSA 331 5794734 YP_001596110.1 CDS lpxC NC_010117.1 202057 202968 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 202057..202968 Coxiella burnetii RSA 331 5794709 YP_001596111.1 CDS COXBURSA331_A0233 NC_010117.1 203577 203978 R identified by glimmer; putative; hypothetical protein complement(203577..203978) Coxiella burnetii RSA 331 5794712 YP_001596112.1 CDS COXBURSA331_A0234 NC_010117.1 203954 204541 R identified by glimmer; putative; hypothetical protein complement(203954..204541) Coxiella burnetii RSA 331 5794703 YP_001596113.1 CDS COXBURSA331_A0235 NC_010117.1 204695 204808 R identified by glimmer; putative; hypothetical protein complement(204695..204808) Coxiella burnetii RSA 331 5794738 YP_001596114.1 CDS COXBURSA331_A0236 NC_010117.1 204995 205252 D identified by glimmer; putative; hypothetical protein 204995..205252 Coxiella burnetii RSA 331 5794861 YP_001596115.1 CDS COXBURSA331_A0237 NC_010117.1 205231 206280 D identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 205231..206280 Coxiella burnetii RSA 331 5794723 YP_001596116.1 CDS COXBURSA331_A0238 NC_010117.1 206332 206634 R identified by glimmer; putative; hypothetical protein complement(206332..206634) Coxiella burnetii RSA 331 5794725 YP_001596117.1 CDS secA NC_010117.1 206685 209426 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 206685..209426 Coxiella burnetii RSA 331 5794726 YP_001596118.1 CDS mutT NC_010117.1 209405 209818 D identified by match to protein family HMM PF00293; mutator mutT protein 209405..209818 Coxiella burnetii RSA 331 5794892 YP_001596119.1 CDS COXBURSA331_A0242 NC_010117.1 210186 210962 R identified by match to protein family HMM PF07072; hypothetical protein complement(210186..210962) Coxiella burnetii RSA 331 5794729 YP_001596120.1 CDS queF NC_010117.1 211023 211859 R catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(211023..211859) Coxiella burnetii RSA 331 5794730 YP_001596121.1 CDS coaE NC_010117.1 211880 212479 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(211880..212479) Coxiella burnetii RSA 331 5794706 YP_001596122.1 CDS pilD NC_010117.1 212490 213350 R identified by match to protein family HMM PF01478; match to protein family HMM PF06750; type 4 prepilin peptidase PilD complement(212490..213350) Coxiella burnetii RSA 331 5794739 YP_001596123.1 CDS pilC NC_010117.1 213376 214431 R identified by match to protein family HMM PF00482; type IV-A pilus assembly protein PilC complement(213376..214431) Coxiella burnetii RSA 331 5794740 YP_001596124.1 CDS pilB NC_010117.1 214424 215974 R identified by match to protein family HMM PF00437; match to protein family HMM PF05157; type IV-A pilus assembly protein PilB complement(214424..215974) Coxiella burnetii RSA 331 5794741 YP_001596125.1 CDS pilA NC_010117.1 215964 216386 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; type IV-A pilin protein PilA complement(215964..216386) Coxiella burnetii RSA 331 5794742 YP_001596126.1 CDS COXBURSA331_A0250 NC_010117.1 216634 216795 R hypothetical protein complement(216634..216795) Coxiella burnetii RSA 331 5794737 YP_001596127.1 CDS csy4_2 NC_010117.1 217036 217593 R identified by match to protein family HMM TIGR02563; CRISPR-associated Csy4 family protein complement(217036..217593) Coxiella burnetii RSA 331 5794759 YP_001596128.1 CDS csy3_2 NC_010117.1 217602 218672 R identified by match to protein family HMM TIGR02566; CRISPR-associated Csy3 family protein complement(217602..218672) Coxiella burnetii RSA 331 5794713 YP_001596129.1 CDS COXBURSA331_A0257 NC_010117.1 225692 226207 R identified by glimmer; putative; hypothetical protein complement(225692..226207) Coxiella burnetii RSA 331 5794775 YP_001596130.1 CDS COXBURSA331_A0261 NC_010117.1 227744 228022 D Acyl carrier proteins are involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; this ACP may be involved in the biosynthesis of lipopeptide antibiotics; acyl carrier protein 227744..228022 Coxiella burnetii RSA 331 5794727 YP_001596131.1 CDS COXBURSA331_A0262 NC_010117.1 228022 228525 D identified by similarity to GB:AAO17441.1; hypothetical protein 228022..228525 Coxiella burnetii RSA 331 5794728 YP_001596132.1 CDS COXBURSA331_A0263 NC_010117.1 229643 230095 R identified by glimmer; putative; hypothetical protein complement(229643..230095) Coxiella burnetii RSA 331 5794763 YP_001596133.1 CDS COXBURSA331_A0264 NC_010117.1 230212 230661 R identified by glimmer; putative; hypothetical protein complement(230212..230661) Coxiella burnetii RSA 331 5794893 YP_001596134.1 CDS pkn2 NC_010117.1 230798 231538 D serine/threonine-protein kinase pkn2 230798..231538 Coxiella burnetii RSA 331 5794891 YP_001596135.1 CDS COXBURSA331_A0266 NC_010117.1 231603 232790 D identified by match to protein family HMM PF00089; trypsin domain-containing protein 231603..232790 Coxiella burnetii RSA 331 5794774 YP_001596136.1 CDS COXBURSA331_A0267 NC_010117.1 232799 234379 R identified by match to protein family HMM PF00528; match to protein family HMM PF02790; match to protein family HMM PF04069; quaternary amine ABC transporter substrate-binding protein complement(232799..234379) Coxiella burnetii RSA 331 5794515 YP_001596137.1 CDS COXBURSA331_A0268 NC_010117.1 234376 235134 R identified by match to protein family HMM PF00005; quaternary amine ABC transporter ATP-binding protein complement(234376..235134) Coxiella burnetii RSA 331 5794058 YP_001596138.1 CDS anmK NC_010117.1 235181 236299 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(235181..236299) Coxiella burnetii RSA 331 5792784 YP_001596139.1 CDS COXBURSA331_A0270 NC_010117.1 236303 237574 R identified by match to protein family HMM PF01476; match to protein family HMM PF01551; M23 peptidase domain-containing protein complement(236303..237574) Coxiella burnetii RSA 331 5794519 YP_001596140.1 CDS tyrS NC_010117.1 237685 238884 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 237685..238884 Coxiella burnetii RSA 331 5794525 YP_001596141.1 CDS COXBURSA331_A0272 NC_010117.1 239315 239416 D identified by glimmer; putative; hypothetical protein 239315..239416 Coxiella burnetii RSA 331 5794541 YP_001596142.1 CDS COXBURSA331_A0274 NC_010117.1 240902 241093 R identified by similarity to GB:CAJ30044.1; hypothetical protein complement(240902..241093) Coxiella burnetii RSA 331 5794688 YP_001596143.1 CDS COXBURSA331_A2230 NC_010117.1 242743 243129 D crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; hypothetical protein 242743..243129 Coxiella burnetii RSA 331 5794508 YP_001596144.1 CDS COXBURSA331_A2231 NC_010117.1 244434 244922 D identified by similarity to GB:AAO89742.1; match to protein family HMM PF00961; homing endonuclease/LAGLIDADG family 23S rRNA group I intron 244434..244922 Coxiella burnetii RSA 331 5794526 YP_001596145.1 CDS COXBURSA331_A0280 NC_010117.1 246232 246504 D identified by glimmer; putative; hypothetical protein 246232..246504 Coxiella burnetii RSA 331 5794565 YP_001596146.1 CDS COXBURSA331_A0285 NC_010117.1 251116 251208 R identified by glimmer; putative; hypothetical protein complement(251116..251208) Coxiella burnetii RSA 331 5794539 YP_001596147.1 CDS COXBURSA331_A0287 NC_010117.1 252604 253749 D hypothetical protein 252604..253749 Coxiella burnetii RSA 331 5794577 YP_001596148.1 CDS sdaA NC_010117.1 253777 255144 R identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase complement(253777..255144) Coxiella burnetii RSA 331 5794812 YP_001596149.1 CDS ampG NC_010117.1 255325 256626 D identified by match to protein family HMM PF07690; AmpG protein 255325..256626 Coxiella burnetii RSA 331 5794552 YP_001596150.1 CDS COXBURSA331_A0290 NC_010117.1 256713 256925 D identified by glimmer; putative; hypothetical protein 256713..256925 Coxiella burnetii RSA 331 5794554 YP_001596151.1 CDS COXBURSA331_A0291 NC_010117.1 256995 259784 R identified by match to protein family HMM PF04357; hypothetical protein complement(256995..259784) Coxiella burnetii RSA 331 5794550 YP_001596152.1 CDS COXBURSA331_A0292 NC_010117.1 259781 261517 R identified by match to protein family HMM PF01103; outer membrane protein, OMP85 family protein complement(259781..261517) Coxiella burnetii RSA 331 5794558 YP_001596153.1 CDS COXBURSA331_A0293 NC_010117.1 261561 261674 D identified by glimmer; putative; hypothetical protein 261561..261674 Coxiella burnetii RSA 331 5794560 YP_001596154.1 CDS coaA NC_010117.1 261658 262614 D catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 261658..262614 Coxiella burnetii RSA 331 5794549 YP_001596155.1 CDS COXBURSA331_A0295 NC_010117.1 262615 263502 D identified by match to protein family HMM PF01263; aldose 1-epimerase family protein 262615..263502 Coxiella burnetii RSA 331 5794561 YP_001596156.1 CDS COXBURSA331_A0296 NC_010117.1 263583 263978 R identified by match to protein family HMM PF00023; ankyrin repeat-containing protein complement(263583..263978) Coxiella burnetii RSA 331 5794585 YP_001596157.1 CDS gltX NC_010117.1 264892 266301 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 264892..266301 Coxiella burnetii RSA 331 5794566 YP_001596158.1 CDS COXBURSA331_A0299 NC_010117.1 266363 266755 D identified by glimmer; putative; hypothetical protein 266363..266755 Coxiella burnetii RSA 331 5794530 YP_001596159.1 CDS COXBURSA331_A0301 NC_010117.1 267035 267310 D hypothetical protein 267035..267310 Coxiella burnetii RSA 331 5794568 YP_001596160.1 CDS COXBURSA331_A0304 NC_010117.1 268565 269545 D identified by glimmer; putative; hypothetical protein 268565..269545 Coxiella burnetii RSA 331 5794573 YP_001596161.1 CDS COXBURSA331_A0305 NC_010117.1 269524 269661 D identified by glimmer; putative; hypothetical protein 269524..269661 Coxiella burnetii RSA 331 5794571 YP_001596162.1 CDS COXBURSA331_A0307 NC_010117.1 271320 271454 R identified by glimmer; putative; hypothetical protein complement(271320..271454) Coxiella burnetii RSA 331 5794559 YP_001596163.1 CDS COXBURSA331_A0308 NC_010117.1 271845 272564 D identified by match to protein family HMM PF01027; hypothetical protein 271845..272564 Coxiella burnetii RSA 331 5794553 YP_001596164.1 CDS cydA2 NC_010117.1 276073 277623 D identified by match to protein family HMM PF01654; cytochrome d ubiquinol oxidase, subunit I 276073..277623 Coxiella burnetii RSA 331 5794584 YP_001596165.1 CDS COXBURSA331_A0313 NC_010117.1 278783 278902 D identified by glimmer; putative; hypothetical protein 278783..278902 Coxiella burnetii RSA 331 5794569 YP_001596166.1 CDS mtaA NC_010117.1 278895 279626 D identified by match to protein family HMM PF01648; match to protein family HMM TIGR00556; phosphopantetheinyl transferase 278895..279626 Coxiella burnetii RSA 331 5794612 YP_001596167.1 CDS COXBURSA331_A0316 NC_010117.1 279895 280011 D identified by glimmer; putative; hypothetical protein 279895..280011 Coxiella burnetii RSA 331 5794546 YP_001596168.1 CDS tuf1 NC_010117.1 280213 281406 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 280213..281406 Coxiella burnetii RSA 331 5794621 YP_001596169.1 CDS secE NC_010117.1 281651 282034 D identified by match to protein family HMM PF00584; match to protein family HMM TIGR00964; Preprotein translocase subunit SecE 281651..282034 Coxiella burnetii RSA 331 5794595 YP_001596170.1 CDS nusG NC_010117.1 282104 282625 D identified by match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922; transcription termination/antitermination factor NusG 282104..282625 Coxiella burnetii RSA 331 5794629 YP_001596171.1 CDS rplK NC_010117.1 282750 283187 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 282750..283187 Coxiella burnetii RSA 331 5794599 YP_001596172.1 CDS rplA NC_010117.1 283187 283885 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 283187..283885 Coxiella burnetii RSA 331 5794602 YP_001596173.1 CDS rplJ NC_010117.1 284139 284663 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 284139..284663 Coxiella burnetii RSA 331 5794632 YP_001596174.1 CDS rplL NC_010117.1 284697 285077 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 284697..285077 Coxiella burnetii RSA 331 5794605 YP_001596175.1 CDS rpoB NC_010117.1 285230 289357 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 285230..289357 Coxiella burnetii RSA 331 5794638 YP_001596176.1 CDS COXBURSA331_A0327 NC_010117.1 289304 289555 R identified by glimmer; putative; hypothetical protein complement(289304..289555) Coxiella burnetii RSA 331 5794610 YP_001596177.1 CDS rpoC NC_010117.1 289625 293869 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 289625..293869 Coxiella burnetii RSA 331 5794644 YP_001596178.1 CDS COXBURSA331_A0331 NC_010117.1 294054 294326 D identified by glimmer; putative; hypothetical protein 294054..294326 Coxiella burnetii RSA 331 5794589 YP_001596179.1 CDS COXBURSA331_A0330 NC_010117.1 294323 295342 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A complement(294323..295342) Coxiella burnetii RSA 331 5794617 YP_001596180.1 CDS rpsL NC_010117.1 295585 295959 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 295585..295959 Coxiella burnetii RSA 331 5794593 YP_001596181.1 CDS rpsG NC_010117.1 295972 296547 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 295972..296547 Coxiella burnetii RSA 331 5794611 YP_001596182.1 CDS fusA NC_010117.1 296557 298656 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 296557..298656 Coxiella burnetii RSA 331 5794597 YP_001596183.1 CDS tuf2 NC_010117.1 298672 299865 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 298672..299865 Coxiella burnetii RSA 331 5794594 YP_001596184.1 CDS rpsJ NC_010117.1 300055 300387 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 300055..300387 Coxiella burnetii RSA 331 5794651 YP_001596185.1 CDS rplC NC_010117.1 300409 301062 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 300409..301062 Coxiella burnetii RSA 331 5794601 YP_001596186.1 CDS rplD NC_010117.1 301062 301679 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 301062..301679 Coxiella burnetii RSA 331 5794630 YP_001596187.1 CDS rplW NC_010117.1 301676 301963 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 301676..301963 Coxiella burnetii RSA 331 5794604 YP_001596188.1 CDS rplB NC_010117.1 301983 302810 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 301983..302810 Coxiella burnetii RSA 331 5794624 YP_001596189.1 CDS rpsS NC_010117.1 302823 303110 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 302823..303110 Coxiella burnetii RSA 331 5794633 YP_001596190.1 CDS rplV NC_010117.1 303110 303457 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 303110..303457 Coxiella burnetii RSA 331 5794830 YP_001596191.1 CDS rpsC NC_010117.1 303457 304140 D identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009; 30S ribosomal protein S3 303457..304140 Coxiella burnetii RSA 331 5794636 YP_001596192.1 CDS rplP NC_010117.1 304152 304565 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 304152..304565 Coxiella burnetii RSA 331 5794607 YP_001596193.1 CDS rpmC NC_010117.1 304566 304763 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 304566..304763 Coxiella burnetii RSA 331 5794653 YP_001596194.1 CDS rpsQ NC_010117.1 304756 305025 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 304756..305025 Coxiella burnetii RSA 331 5794635 YP_001596195.1 CDS rplN NC_010117.1 305036 305404 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 305036..305404 Coxiella burnetii RSA 331 5794637 YP_001596196.1 CDS rplX NC_010117.1 305416 305739 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 305416..305739 Coxiella burnetii RSA 331 5794614 YP_001596197.1 CDS rplE NC_010117.1 305856 306404 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 305856..306404 Coxiella burnetii RSA 331 5794667 YP_001596198.1 CDS rpsN NC_010117.1 306409 306708 D identified by match to protein family HMM PF00253; 30S ribosomal protein S14 306409..306708 Coxiella burnetii RSA 331 5794646 YP_001596199.1 CDS rpsH NC_010117.1 306711 307103 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 306711..307103 Coxiella burnetii RSA 331 5794618 YP_001596200.1 CDS rplF NC_010117.1 307141 307677 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 307141..307677 Coxiella burnetii RSA 331 5794640 YP_001596201.1 CDS rplR NC_010117.1 307677 308030 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 307677..308030 Coxiella burnetii RSA 331 5794887 YP_001596202.1 CDS rpsE NC_010117.1 308042 308548 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 308042..308548 Coxiella burnetii RSA 331 5794623 YP_001596203.1 CDS rpmD NC_010117.1 308552 308743 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 308552..308743 Coxiella burnetii RSA 331 5794648 YP_001596204.1 CDS rplO NC_010117.1 308746 309177 D late assembly protein; 50S ribosomal protein L15 308746..309177 Coxiella burnetii RSA 331 5794647 YP_001596205.1 CDS secY NC_010117.1 309195 310523 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 309195..310523 Coxiella burnetii RSA 331 5794649 YP_001596206.1 CDS rpmJ NC_010117.1 310536 310658 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 310536..310658 Coxiella burnetii RSA 331 5794634 YP_001596207.1 CDS rpsM NC_010117.1 310898 311257 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 310898..311257 Coxiella burnetii RSA 331 5794654 YP_001596208.1 CDS rpsK NC_010117.1 311285 311656 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 311285..311656 Coxiella burnetii RSA 331 5794650 YP_001596209.1 CDS rpsD NC_010117.1 311669 312289 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 311669..312289 Coxiella burnetii RSA 331 5794686 YP_001596210.1 CDS rpoA NC_010117.1 312302 313285 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 312302..313285 Coxiella burnetii RSA 331 5794692 YP_001596211.1 CDS rplQ NC_010117.1 313297 313677 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 313297..313677 Coxiella burnetii RSA 331 5794670 YP_001596212.1 CDS COXBURSA331_A0364 NC_010117.1 313680 314906 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR01272; glucose/galactose transporter family protein 313680..314906 Coxiella burnetii RSA 331 5794657 YP_001596213.1 CDS COXBURSA331_A0365 NC_010117.1 314993 315109 D identified by glimmer; putative; hypothetical protein 314993..315109 Coxiella burnetii RSA 331 5794689 YP_001596214.1 CDS COXBURSA331_A0366 NC_010117.1 315163 315399 D identified by glimmer; putative; hypothetical protein 315163..315399 Coxiella burnetii RSA 331 5794675 YP_001596215.1 CDS COXBURSA331_A0367 NC_010117.1 315429 316091 D identified by glimmer; putative; hypothetical protein 315429..316091 Coxiella burnetii RSA 331 5794643 YP_001596216.1 CDS COXBURSA331_A0368 NC_010117.1 316064 316282 D identified by glimmer; putative; hypothetical protein 316064..316282 Coxiella burnetii RSA 331 5794659 YP_001596217.1 CDS COXBURSA331_A0369 NC_010117.1 316431 317651 D enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 316431..317651 Coxiella burnetii RSA 331 5794678 YP_001596218.1 CDS ssb NC_010117.1 317663 318139 R identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-stranded DNA-binding protein complement(317663..318139) Coxiella burnetii RSA 331 5794685 YP_001596219.1 CDS COXBURSA331_A0371 NC_010117.1 318189 319565 R identified by match to protein family HMM PF07690; major facilitator family transporter complement(318189..319565) Coxiella burnetii RSA 331 5794656 YP_001596220.1 CDS COXBURSA331_A0372 NC_010117.1 319650 320396 R identified by glimmer; putative; hypothetical protein complement(319650..320396) Coxiella burnetii RSA 331 5794684 YP_001596221.1 CDS COXBURSA331_A0374 NC_010117.1 320564 320836 D identified by glimmer; putative; hypothetical protein 320564..320836 Coxiella burnetii RSA 331 5794708 YP_001596222.1 CDS uvrA NC_010117.1 322021 324885 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630; excinuclease ABC subunit A 322021..324885 Coxiella burnetii RSA 331 5794714 YP_001596223.1 CDS COXBURSA331_A0376 NC_010117.1 324967 325131 R identified by glimmer; putative; hypothetical protein complement(324967..325131) Coxiella burnetii RSA 331 5794690 YP_001596224.1 CDS hemE NC_010117.1 325195 326280 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 325195..326280 Coxiella burnetii RSA 331 5794665 YP_001596225.1 CDS COXBURSA331_A0379 NC_010117.1 326249 327400 D identified by match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 326249..327400 Coxiella burnetii RSA 331 5794697 YP_001596226.1 CDS COXBURSA331_A0378 NC_010117.1 327368 327553 R identified by glimmer; putative; hypothetical protein complement(327368..327553) Coxiella burnetii RSA 331 5794691 YP_001596227.1 CDS COXBURSA331_A0380 NC_010117.1 327453 327605 R identified by glimmer; putative; hypothetical protein complement(327453..327605) Coxiella burnetii RSA 331 5794695 YP_001596228.1 CDS COXBURSA331_A0381 NC_010117.1 327653 328246 D identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; MarC membrane protein 327653..328246 Coxiella burnetii RSA 331 5794664 YP_001596229.1 CDS COXBURSA331_A0382 NC_010117.1 328270 329097 R identified by match to protein family HMM PF02274; amidinotransferase family protein complement(328270..329097) Coxiella burnetii RSA 331 5794694 YP_001596230.1 CDS COXBURSA331_A0383 NC_010117.1 329204 330277 D identified by match to protein family HMM PF00817; ImpB/MucB/SamB family protein 329204..330277 Coxiella burnetii RSA 331 5794698 YP_001596231.1 CDS COXBURSA331_A0385 NC_010117.1 330348 330893 D identified by match to protein family HMM PF00199; catalase 330348..330893 Coxiella burnetii RSA 331 5794496 YP_001596232.1 CDS COXBURSA331_A0384 NC_010117.1 330684 331169 R hypothetical protein complement(330684..331169) Coxiella burnetii RSA 331 5794478 YP_001596233.1 CDS COXBURSA331_A0386 NC_010117.1 331397 331537 D identified by glimmer; putative; hypothetical protein 331397..331537 Coxiella burnetii RSA 331 5794471 YP_001596234.1 CDS COXBURSA331_A0387 NC_010117.1 331525 331752 D identified by match to protein family HMM PF05973; prophage protein gp49 331525..331752 Coxiella burnetii RSA 331 5794461 YP_001596235.1 CDS COXBURSA331_A0388 NC_010117.1 331756 332076 D hypothetical protein 331756..332076 Coxiella burnetii RSA 331 5794460 YP_001596236.1 CDS pcnB NC_010117.1 332308 333627 D identified by match to protein family HMM PF01743; match to protein family HMM TIGR01942; poly(A) polymerase 332308..333627 Coxiella burnetii RSA 331 5794361 YP_001596237.1 CDS folK NC_010117.1 333624 334184 D identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 333624..334184 Coxiella burnetii RSA 331 5794297 YP_001596238.1 CDS coaD NC_010117.1 334181 334660 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 334181..334660 Coxiella burnetii RSA 331 5794111 YP_001596239.1 CDS COXBURSA331_A0393 NC_010117.1 334675 334920 D identified by match to protein family HMM PF00037; ferredoxin 334675..334920 Coxiella burnetii RSA 331 5793472 YP_001596240.1 CDS rpmG NC_010117.1 334934 335146 R identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023; 50S ribosomal protein L33 complement(334934..335146) Coxiella burnetii RSA 331 5794014 YP_001596241.1 CDS rpmB NC_010117.1 335157 335396 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(335157..335396) Coxiella burnetii RSA 331 5793984 YP_001596242.1 CDS COXBURSA331_A0396 NC_010117.1 335347 335493 R identified by glimmer; putative; hypothetical protein complement(335347..335493) Coxiella burnetii RSA 331 5793920 YP_001596243.1 CDS dut NC_010117.1 336427 336885 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 336427..336885 Coxiella burnetii RSA 331 5793843 YP_001596244.1 CDS algC NC_010117.1 336863 338278 D identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 336863..338278 Coxiella burnetii RSA 331 5793814 YP_001596245.1 CDS pyrE NC_010117.1 339739 340368 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(339739..340368) Coxiella burnetii RSA 331 5793641 YP_001596246.1 CDS xth NC_010117.1 340414 341193 D identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 340414..341193 Coxiella burnetii RSA 331 5793596 YP_001596247.1 CDS murI NC_010117.1 341449 342291 R identified by match to protein family HMM PF01177; match to protein family HMM TIGR00067; glutamate racemase complement(341449..342291) Coxiella burnetii RSA 331 5793501 YP_001596248.1 CDS rph NC_010117.1 342291 343004 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(342291..343004) Coxiella burnetii RSA 331 5793347 YP_001596249.1 CDS yicC NC_010117.1 343148 344011 D identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255; hypothetical protein 343148..344011 Coxiella burnetii RSA 331 5792880 YP_001596250.1 CDS gmk NC_010117.1 344004 344624 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 344004..344624 Coxiella burnetii RSA 331 5793317 YP_001596251.1 CDS rpoZ NC_010117.1 344699 344992 D identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690; DNA-directed RNA polymerase subunit omega 344699..344992 Coxiella burnetii RSA 331 5793305 YP_001596252.1 CDS spoT NC_010117.1 345046 347169 D identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase 345046..347169 Coxiella burnetii RSA 331 5793302 YP_001596253.1 CDS COXBURSA331_A0410 NC_010117.1 347260 347643 D identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; putative endoribonuclease L-PSP 347260..347643 Coxiella burnetii RSA 331 5793582 YP_001596254.1 CDS recG NC_010117.1 347650 349764 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 347650..349764 Coxiella burnetii RSA 331 5793135 YP_001596255.1 CDS COXBURSA331_A0412 NC_010117.1 350045 350164 D identified by glimmer; putative; hypothetical protein 350045..350164 Coxiella burnetii RSA 331 5793129 YP_001596256.1 CDS COXBURSA331_A0413 NC_010117.1 350164 350859 D identified by match to protein family HMM PF01389; outer membrane protein 350164..350859 Coxiella burnetii RSA 331 5793435 YP_001596257.1 CDS COXBURSA331_A0414 NC_010117.1 350947 351075 R identified by glimmer; putative; hypothetical protein complement(350947..351075) Coxiella burnetii RSA 331 5792931 YP_001596258.1 CDS COXBURSA331_A0415 NC_010117.1 351050 351274 R identified by glimmer; putative; hypothetical protein complement(351050..351274) Coxiella burnetii RSA 331 5793715 YP_001596259.1 CDS htpG NC_010117.1 351277 353178 D molecular chaperone; heat shock protein 90 351277..353178 Coxiella burnetii RSA 331 5792807 YP_001596260.1 CDS COXBURSA331_A0417 NC_010117.1 353350 353466 R identified by glimmer; putative; hypothetical protein complement(353350..353466) Coxiella burnetii RSA 331 5792726 YP_001596261.1 CDS COXBURSA331_A0418 NC_010117.1 353441 354199 D identified by similarity to GB:AAM03442.1; hypothetical protein 353441..354199 Coxiella burnetii RSA 331 5792864 YP_001596262.1 CDS folD NC_010117.1 354358 355209 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(354358..355209) Coxiella burnetii RSA 331 5792687 YP_001596263.1 CDS COXBURSA331_A0420 NC_010117.1 355907 357370 R identified by match to protein family HMM PF01464; match to protein family HMM PF01476; Slt family transglycosylase complement(355907..357370) Coxiella burnetii RSA 331 5793481 YP_001596264.1 CDS COXBURSA331_A0421 NC_010117.1 357425 357553 R identified by glimmer; putative; hypothetical protein complement(357425..357553) Coxiella burnetii RSA 331 5793608 YP_001596265.1 CDS COXBURSA331_A0422 NC_010117.1 357543 358316 R identified by match to protein family HMM PF00753; match to protein family HMM TIGR03413; metallo-beta-lactamase family protein complement(357543..358316) Coxiella burnetii RSA 331 5793468 YP_001596266.1 CDS COXBURSA331_A0423 NC_010117.1 358381 359112 D identified by match to protein family HMM PF08241; putative methyltransferase 358381..359112 Coxiella burnetii RSA 331 5793658 YP_001596267.1 CDS rnhA NC_010117.1 359127 359591 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 359127..359591 Coxiella burnetii RSA 331 5793311 YP_001596268.1 CDS dnaQ NC_010117.1 360021 360719 D identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406; DNA polymerase III subunit epsilon 360021..360719 Coxiella burnetii RSA 331 5792727 YP_001596269.1 CDS COXBURSA331_A0425 NC_010117.1 360713 361357 R identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein complement(360713..361357) Coxiella burnetii RSA 331 5792755 YP_001596270.1 CDS COXBURSA331_A0428 NC_010117.1 361348 361464 D identified by glimmer; putative; hypothetical protein 361348..361464 Coxiella burnetii RSA 331 5792847 YP_001596271.1 CDS COXBURSA331_A0429 NC_010117.1 364466 365239 R identified by match to protein family HMM TIGR03349; hypothetical protein complement(364466..365239) Coxiella burnetii RSA 331 5792978 YP_001596272.1 CDS COXBURSA331_A0430 NC_010117.1 365433 366305 D hypothetical protein 365433..366305 Coxiella burnetii RSA 331 5792996 YP_001596273.1 CDS COXBURSA331_A0431 NC_010117.1 366302 366553 D identified by match to protein family HMM PF00550; putative acyl carrier protein 366302..366553 Coxiella burnetii RSA 331 5793013 YP_001596274.1 CDS COXBURSA331_A0433 NC_010117.1 366534 368213 D identified by match to protein family HMM PF00501; AMP-binding protein 366534..368213 Coxiella burnetii RSA 331 5793021 YP_001596275.1 CDS COXBURSA331_A0432 NC_010117.1 368191 368358 R identified by glimmer; putative; hypothetical protein complement(368191..368358) Coxiella burnetii RSA 331 5793073 YP_001596276.1 CDS purD NC_010117.1 368475 369749 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(368475..369749) Coxiella burnetii RSA 331 5793103 YP_001596277.1 CDS COXBURSA331_A0436 NC_010117.1 371318 372991 D identified by glimmer; putative; hypothetical protein 371318..372991 Coxiella burnetii RSA 331 5793181 YP_001596278.1 CDS thiC NC_010117.1 373106 374752 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 373106..374752 Coxiella burnetii RSA 331 5793188 YP_001596279.1 CDS thiO NC_010117.1 374752 375774 D identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352; glycine oxidase ThiO 374752..375774 Coxiella burnetii RSA 331 5794079 YP_001596280.1 CDS thiG NC_010117.1 375976 376755 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 375976..376755 Coxiella burnetii RSA 331 5793315 YP_001596281.1 CDS thiDE NC_010117.1 376752 378191 D identified by match to protein family HMM PF02581; match to protein family HMM PF08543; match to protein family HMM TIGR00097; match to protein family HMM TIGR00693; thiamine-phosphate pyrophosphorylase/thiamine-phosphate pyrophosphorylase 376752..378191 Coxiella burnetii RSA 331 5793330 YP_001596282.1 CDS COXBURSA331_A0442 NC_010117.1 378269 378943 D identified by match to protein family HMM PF03767; putative acid phosphatase 378269..378943 Coxiella burnetii RSA 331 5793333 YP_001596283.1 CDS purH NC_010117.1 378960 380540 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(378960..380540) Coxiella burnetii RSA 331 5794042 YP_001596284.1 CDS fis NC_010117.1 380524 380817 R identified by match to protein family HMM PF02954; DNA-binding protein Fis complement(380524..380817) Coxiella burnetii RSA 331 5793365 YP_001596285.1 CDS pepN NC_010117.1 381061 383697 D identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414; aminopeptidase N 381061..383697 Coxiella burnetii RSA 331 5793376 YP_001596286.1 CDS COXBURSA331_A0446 NC_010117.1 383719 384480 R identified by glimmer; putative; hypothetical protein complement(383719..384480) Coxiella burnetii RSA 331 5793390 YP_001596287.1 CDS pfkA NC_010117.1 385691 386689 R identified by match to protein family HMM PF00365; match to protein family HMM TIGR02482; 6-phosphofructokinase complement(385691..386689) Coxiella burnetii RSA 331 5793439 YP_001596288.1 CDS COXBURSA331_A0449 NC_010117.1 386616 386789 D identified by glimmer; putative; hypothetical protein 386616..386789 Coxiella burnetii RSA 331 5793473 YP_001596289.1 CDS COXBURSA331_A0450 NC_010117.1 386878 387006 R identified by glimmer; putative; hypothetical protein complement(386878..387006) Coxiella burnetii RSA 331 5793583 YP_001596290.1 CDS COXBURSA331_A0453 NC_010117.1 388310 388633 D identified by glimmer; putative; hypothetical protein 388310..388633 Coxiella burnetii RSA 331 5793589 YP_001596291.1 CDS xylA NC_010117.1 388634 389833 R identified by match to protein family HMM PF01261; match to protein family HMM TIGR02630; xylose isomerase complement(388634..389833) Coxiella burnetii RSA 331 5793609 YP_001596292.1 CDS xylT NC_010117.1 391492 392883 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; D-xylose-proton symporter complement(391492..392883) Coxiella burnetii RSA 331 5793691 YP_001596293.1 CDS gph NC_010117.1 392924 393607 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; phosphoglycolate phosphatase complement(392924..393607) Coxiella burnetii RSA 331 5793730 YP_001596294.1 CDS ubiG NC_010117.1 393600 394304 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(393600..394304) Coxiella burnetii RSA 331 5793744 YP_001596295.1 CDS COXBURSA331_A0459 NC_010117.1 394291 394644 R identified by match to protein family HMM PF01627; Hpt domain-containing protein complement(394291..394644) Coxiella burnetii RSA 331 5793760 YP_001596296.1 CDS czcD NC_010117.1 394690 395583 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux system protein CzcD complement(394690..395583) Coxiella burnetii RSA 331 5793816 YP_001596297.1 CDS COXBURSA331_A0461 NC_010117.1 395720 396736 R SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease complement(395720..396736) Coxiella burnetii RSA 331 5793914 YP_001596298.1 CDS COXBURSA331_A0462 NC_010117.1 396966 398522 D identified by match to protein family HMM PF00324; amino acid permease family protein 396966..398522 Coxiella burnetii RSA 331 5793933 YP_001596299.1 CDS COXBURSA331_A0465 NC_010117.1 400805 400966 R identified by glimmer; putative; hypothetical protein complement(400805..400966) Coxiella burnetii RSA 331 5794051 YP_001596300.1 CDS COXBURSA331_A0464 NC_010117.1 400991 401227 R identified by glimmer; putative; hypothetical protein complement(400991..401227) Coxiella burnetii RSA 331 5793930 YP_001596301.1 CDS COXBURSA331_A0467 NC_010117.1 402156 403133 R hypothetical protein complement(402156..403133) Coxiella burnetii RSA 331 5794088 YP_001596302.1 CDS COXBURSA331_A0468 NC_010117.1 403160 403447 R identified by glimmer; putative; hypothetical protein complement(403160..403447) Coxiella burnetii RSA 331 5794138 YP_001596303.1 CDS COXBURSA331_A0469 NC_010117.1 403589 404794 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase complement(403589..404794) Coxiella burnetii RSA 331 5794298 YP_001596304.1 CDS COXBURSA331_A0470 NC_010117.1 404712 405641 R hypothetical protein complement(404712..405641) Coxiella burnetii RSA 331 5794302 YP_001596305.1 CDS COXBURSA331_A0471 NC_010117.1 405875 407200 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; putative iorganic phosphate transporter complement(405875..407200) Coxiella burnetii RSA 331 5794305 YP_001596306.1 CDS COXBURSA331_A0472 NC_010117.1 407381 408139 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; hypothetical protein complement(407381..408139) Coxiella burnetii RSA 331 5794306 YP_001596307.1 CDS phoB NC_010117.1 408120 408866 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; phosphate regulon transcriptional regulatory protein PhoB complement(408120..408866) Coxiella burnetii RSA 331 5794388 YP_001596308.1 CDS COXBURSA331_A0474 NC_010117.1 408993 410102 D identified by match to protein family HMM PF07995; glucose/sorbosone dehydrogenase 408993..410102 Coxiella burnetii RSA 331 5794395 YP_001596309.1 CDS COXBURSA331_A0476 NC_010117.1 410155 410301 D identified by glimmer; putative; hypothetical protein 410155..410301 Coxiella burnetii RSA 331 5794403 YP_001596310.1 CDS COXBURSA331_A0475 NC_010117.1 410273 410500 R identified by match to protein family HMM PF05433; putative surface antigen complement(410273..410500) Coxiella burnetii RSA 331 5794473 YP_001596311.1 CDS COXBURSA331_A0479 NC_010117.1 411784 411909 D identified by glimmer; putative; hypothetical protein 411784..411909 Coxiella burnetii RSA 331 5794497 YP_001596312.1 CDS COXBURSA331_A0478 NC_010117.1 411868 412863 R identified by glimmer; putative; hypothetical protein complement(411868..412863) Coxiella burnetii RSA 331 5794493 YP_001596313.1 CDS COXBURSA331_A0480 NC_010117.1 413010 413534 R identified by match to protein family HMM PF01575; MaoC domain-containing protein complement(413010..413534) Coxiella burnetii RSA 331 5794463 YP_001596314.1 CDS COXBURSA331_A0482 NC_010117.1 414627 414803 D identified by glimmer; putative; hypothetical protein 414627..414803 Coxiella burnetii RSA 331 5792705 YP_001596315.1 CDS COXBURSA331_A0483 NC_010117.1 415068 415499 D identified by glimmer; putative; hypothetical protein 415068..415499 Coxiella burnetii RSA 331 5792707 YP_001596316.1 CDS COXBURSA331_A0485 NC_010117.1 415548 415724 D identified by glimmer; putative; hypothetical protein 415548..415724 Coxiella burnetii RSA 331 5793713 YP_001596317.1 CDS COXBURSA331_A0484 NC_010117.1 415716 415832 R identified by glimmer; putative; hypothetical protein complement(415716..415832) Coxiella burnetii RSA 331 5792721 YP_001596318.1 CDS COXBURSA331_A0486 NC_010117.1 415984 416205 D identified by glimmer; putative; hypothetical protein 415984..416205 Coxiella burnetii RSA 331 5793623 YP_001596319.1 CDS COXBURSA331_A0487 NC_010117.1 416362 416784 D putative lipoprotein 416362..416784 Coxiella burnetii RSA 331 5794570 YP_001596320.1 CDS COXBURSA331_A0488 NC_010117.1 416799 417572 R identified by match to protein family HMM PF01471; match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase/peptidoglycan binding domain-containing protein complement(416799..417572) Coxiella burnetii RSA 331 5792708 YP_001596321.1 CDS COXBURSA331_A0489 NC_010117.1 417589 417714 R identified by glimmer; putative; hypothetical protein complement(417589..417714) Coxiella burnetii RSA 331 5793708 YP_001596322.1 CDS COXBURSA331_A0490 NC_010117.1 417825 418355 D identified by match to protein family HMM PF04229; hypothetical protein 417825..418355 Coxiella burnetii RSA 331 5793231 YP_001596323.1 CDS COXBURSA331_A0492 NC_010117.1 419139 420137 R identified by match to protein family HMM PF00348; polyprenyl synthetase family protein complement(419139..420137) Coxiella burnetii RSA 331 5794206 YP_001596324.1 CDS tag NC_010117.1 420227 420841 D identified by match to protein family HMM PF03352; match to protein family HMM TIGR00624; DNA-3-methyladenine glycosylase I 420227..420841 Coxiella burnetii RSA 331 5793836 YP_001596325.1 CDS COXBURSA331_A0495 NC_010117.1 421192 422211 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 421192..422211 Coxiella burnetii RSA 331 5792752 YP_001596326.1 CDS COXBURSA331_A0494 NC_010117.1 422208 422480 R identified by glimmer; putative; hypothetical protein complement(422208..422480) Coxiella burnetii RSA 331 5794300 YP_001596327.1 CDS rplU NC_010117.1 422805 423152 D identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 422805..423152 Coxiella burnetii RSA 331 5794035 YP_001596328.1 CDS rpmA NC_010117.1 423142 423414 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 423142..423414 Coxiella burnetii RSA 331 5792930 YP_001596329.1 CDS obgE NC_010117.1 423579 424598 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 423579..424598 Coxiella burnetii RSA 331 5792771 YP_001596330.1 CDS COXBURSA331_A0499 NC_010117.1 427923 428876 D identified by glimmer; putative; hypothetical protein 427923..428876 Coxiella burnetii RSA 331 5792774 YP_001596331.1 CDS rpsT NC_010117.1 428882 429154 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(428882..429154) Coxiella burnetii RSA 331 5794021 YP_001596332.1 CDS COXBURSA331_A0501 NC_010117.1 429277 429408 R identified by glimmer; putative; hypothetical protein complement(429277..429408) Coxiella burnetii RSA 331 5792844 YP_001596333.1 CDS mviN NC_010117.1 429398 430945 D identified by match to protein family HMM PF01554; match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 429398..430945 Coxiella burnetii RSA 331 5794531 YP_001596334.1 CDS ribF NC_010117.1 431017 431979 D identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF 431017..431979 Coxiella burnetii RSA 331 5792853 YP_001596335.1 CDS COXBURSA331_A0504 NC_010117.1 432121 433275 R identified by glimmer; putative; hypothetical protein complement(432121..433275) Coxiella burnetii RSA 331 5792729 YP_001596336.1 CDS COXBURSA331_A0505 NC_010117.1 433311 433847 R identified by glimmer; putative; hypothetical protein complement(433311..433847) Coxiella burnetii RSA 331 5793017 YP_001596337.1 CDS COXBURSA331_A0506 NC_010117.1 433979 434110 D identified by glimmer; putative; hypothetical protein 433979..434110 Coxiella burnetii RSA 331 5792878 YP_001596338.1 CDS COXBURSA331_A0507 NC_010117.1 434154 434840 D putative lipoprotein 434154..434840 Coxiella burnetii RSA 331 5792865 YP_001596339.1 CDS ileS NC_010117.1 434953 437763 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 434953..437763 Coxiella burnetii RSA 331 5792728 YP_001596340.1 CDS lspA NC_010117.1 437772 438263 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 437772..438263 Coxiella burnetii RSA 331 5792908 YP_001596341.1 CDS COXBURSA331_A0510 NC_010117.1 438275 438823 D identified by glimmer; putative; hypothetical protein 438275..438823 Coxiella burnetii RSA 331 5793692 YP_001596342.1 CDS COXBURSA331_A0511 NC_010117.1 438845 439324 D identified by glimmer; putative; hypothetical protein 438845..439324 Coxiella burnetii RSA 331 5792923 YP_001596343.1 CDS COXBURSA331_A0512 NC_010117.1 439333 439458 D identified by glimmer; putative; hypothetical protein 439333..439458 Coxiella burnetii RSA 331 5793695 YP_001596344.1 CDS COXBURSA331_A0514 NC_010117.1 439756 440727 D identified by similarity to SP:P08077; aminoglycoside phosphotransferase family protein 439756..440727 Coxiella burnetii RSA 331 5793016 YP_001596345.1 CDS COXBURSA331_A0517 NC_010117.1 441918 442073 R identified by glimmer; putative; hypothetical protein complement(441918..442073) Coxiella burnetii RSA 331 5793110 YP_001596346.1 CDS COXBURSA331_A0519 NC_010117.1 442188 442352 D identified by glimmer; putative; hypothetical protein 442188..442352 Coxiella burnetii RSA 331 5793514 YP_001596347.1 CDS COXBURSA331_A0518 NC_010117.1 442349 444085 R hypothetical protein complement(442349..444085) Coxiella burnetii RSA 331 5793048 YP_001596348.1 CDS COXBURSA331_A0520 NC_010117.1 444500 444910 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; type IV pilin complement(444500..444910) Coxiella burnetii RSA 331 5793057 YP_001596349.1 CDS COXBURSA331_A0522 NC_010117.1 445731 446519 D identified by glimmer; putative; hypothetical protein 445731..446519 Coxiella burnetii RSA 331 5794090 YP_001596350.1 CDS COXBURSA331_A0523 NC_010117.1 446599 447054 R identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase family protein complement(446599..447054) Coxiella burnetii RSA 331 5793077 YP_001596351.1 CDS COXBURSA331_A0525 NC_010117.1 447682 448527 R identified by match to protein family HMM PF01063; putative branched-chain amino acid aminotransferase complement(447682..448527) Coxiella burnetii RSA 331 5793069 YP_001596352.1 CDS COXBURSA331_A0526 NC_010117.1 448630 449460 R identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein complement(448630..449460) Coxiella burnetii RSA 331 5793166 YP_001596353.1 CDS COXBURSA331_A0527 NC_010117.1 449538 449672 R identified by glimmer; putative; hypothetical protein complement(449538..449672) Coxiella burnetii RSA 331 5792909 YP_001596354.1 CDS panD NC_010117.1 451300 451635 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(451300..451635) Coxiella burnetii RSA 331 5792736 YP_001596355.1 CDS panC NC_010117.1 451629 452402 R identified by match to protein family HMM PF02569; match to protein family HMM TIGR00018; pantoate--beta-alanine ligase complement(451629..452402) Coxiella burnetii RSA 331 5793262 YP_001596356.1 CDS panB NC_010117.1 452413 453204 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(452413..453204) Coxiella burnetii RSA 331 5793265 YP_001596357.1 CDS COXBURSA331_A0532 NC_010117.1 453305 454672 R identified by glimmer; putative; hypothetical protein complement(453305..454672) Coxiella burnetii RSA 331 5792893 YP_001596358.1 CDS COXBURSA331_A0533 NC_010117.1 454919 456514 R identified by match to protein family HMM PF00324; amino acid permease family protein complement(454919..456514) Coxiella burnetii RSA 331 5793362 YP_001596359.1 CDS COXBURSA331_A0534 NC_010117.1 456705 456917 D identified by match to protein family HMM PF06945; hypothetical protein 456705..456917 Coxiella burnetii RSA 331 5793273 YP_001596360.1 CDS COXBURSA331_A0536 NC_010117.1 458021 458416 D identified by match to protein family HMM PF00472; peptidyl-tRNA hydrolase domain-containing protein 458021..458416 Coxiella burnetii RSA 331 5793298 YP_001596361.1 CDS lysS NC_010117.1 458548 460044 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 458548..460044 Coxiella burnetii RSA 331 5793306 YP_001596362.1 CDS COXBURSA331_A0537 NC_010117.1 460013 460789 R identified by match to protein family HMM PF01571; match to protein family HMM TIGR03317; glycine cleavage T-protein complement(460013..460789) Coxiella burnetii RSA 331 5794094 YP_001596363.1 CDS COXBURSA331_A0539 NC_010117.1 460896 462182 D identified by match to protein family HMM PF07690; major facilitator family transporter 460896..462182 Coxiella burnetii RSA 331 5793327 YP_001596364.1 CDS COXBURSA331_A0540 NC_010117.1 462249 462770 D small conductance mechanosensitive ion channel (MscS) family protein 462249..462770 Coxiella burnetii RSA 331 5793463 YP_001596365.1 CDS COXBURSA331_A0542 NC_010117.1 463349 463585 R identified by glimmer; putative; hypothetical protein complement(463349..463585) Coxiella burnetii RSA 331 5793332 YP_001596366.1 CDS COXBURSA331_A0543 NC_010117.1 463601 463942 R identified by glimmer; putative; hypothetical protein complement(463601..463942) Coxiella burnetii RSA 331 5793339 YP_001596367.1 CDS COXBURSA331_A0544 NC_010117.1 463930 464679 R identified by glimmer; putative; hypothetical protein complement(463930..464679) Coxiella burnetii RSA 331 5793346 YP_001596368.1 CDS COXBURSA331_A0545 NC_010117.1 464940 465527 D identified by glimmer; putative; hypothetical protein 464940..465527 Coxiella burnetii RSA 331 5793487 YP_001596369.1 CDS COXBURSA331_A0546 NC_010117.1 465524 465664 D identified by glimmer; putative; hypothetical protein 465524..465664 Coxiella burnetii RSA 331 5793725 YP_001596370.1 CDS COXBURSA331_A0547 NC_010117.1 465642 465839 D identified by glimmer; putative; hypothetical protein 465642..465839 Coxiella burnetii RSA 331 5793429 YP_001596371.1 CDS COXBURSA331_A0548 NC_010117.1 465939 466454 R identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA-[protein]-cysteine S-methyltransferase complement(465939..466454) Coxiella burnetii RSA 331 5793431 YP_001596372.1 CDS rplS NC_010117.1 466460 466807 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(466460..466807) Coxiella burnetii RSA 331 5793432 YP_001596373.1 CDS trmD NC_010117.1 466804 467544 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(466804..467544) Coxiella burnetii RSA 331 5793612 YP_001596374.1 CDS rimM NC_010117.1 467546 468052 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(467546..468052) Coxiella burnetii RSA 331 5793444 YP_001596375.1 CDS rpsP NC_010117.1 468131 468544 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(468131..468544) Coxiella burnetii RSA 331 5793449 YP_001596376.1 CDS COXBURSA331_A0553 NC_010117.1 468991 469701 D identified by glimmer; putative; hypothetical protein 468991..469701 Coxiella burnetii RSA 331 5793712 YP_001596377.1 CDS COXBURSA331_A0555 NC_010117.1 469790 470809 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 469790..470809 Coxiella burnetii RSA 331 5793457 YP_001596378.1 CDS COXBURSA331_A0554 NC_010117.1 470806 471078 R identified by glimmer; putative; hypothetical protein complement(470806..471078) Coxiella burnetii RSA 331 5793460 YP_001596379.1 CDS COXBURSA331_A0557 NC_010117.1 471085 471213 D identified by glimmer; putative; hypothetical protein 471085..471213 Coxiella burnetii RSA 331 5793428 YP_001596380.1 CDS COXBURSA331_A0556 NC_010117.1 471168 471722 R identified by match to protein family HMM PF00023; ankyrin repeat-containing protein complement(471168..471722) Coxiella burnetii RSA 331 5793465 YP_001596381.1 CDS ffh NC_010117.1 472879 474264 R identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein complement(472879..474264) Coxiella burnetii RSA 331 5792881 YP_001596382.1 CDS COXBURSA331_A0560 NC_010117.1 474301 474837 D identified by match to protein family HMM PF01578; cytochrome C assembly protein 474301..474837 Coxiella burnetii RSA 331 5793474 YP_001596383.1 CDS COXBURSA331_A0561 NC_010117.1 474834 476087 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; HlyC/CorC (HCC) family protein 474834..476087 Coxiella burnetii RSA 331 5793478 YP_001596384.1 CDS COXBURSA331_A0562 NC_010117.1 476113 476649 D putative fimT protein 476113..476649 Coxiella burnetii RSA 331 5793480 YP_001596385.1 CDS adk NC_010117.1 476684 477379 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 476684..477379 Coxiella burnetii RSA 331 5793484 YP_001596386.1 CDS trx NC_010117.1 477413 477778 D identified by match to protein family HMM PF00085; thioredoxin 477413..477778 Coxiella burnetii RSA 331 5793455 YP_001596387.1 CDS COXBURSA331_A0565 NC_010117.1 477804 478157 R putative DNA-binding protein complement(477804..478157) Coxiella burnetii RSA 331 5793488 YP_001596388.1 CDS COXBURSA331_A0566 NC_010117.1 478448 478849 D hypothetical protein 478448..478849 Coxiella burnetii RSA 331 5793427 YP_001596389.1 CDS COXBURSA331_A0567 NC_010117.1 478879 480048 D identified by match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 478879..480048 Coxiella burnetii RSA 331 5793491 YP_001596390.1 CDS COXBURSA331_A0568 NC_010117.1 480124 480900 D hypothetical protein 480124..480900 Coxiella burnetii RSA 331 5793493 YP_001596391.1 CDS aceE NC_010117.1 480945 483599 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 480945..483599 Coxiella burnetii RSA 331 5793307 YP_001596392.1 CDS aceF NC_010117.1 483665 484975 D identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex 483665..484975 Coxiella burnetii RSA 331 5792750 YP_001596393.1 CDS lpdA NC_010117.1 484988 486412 D identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoyl dehydrogenase, E3 component of pyruvate dehydrogenases complex 484988..486412 Coxiella burnetii RSA 331 5794591 YP_001596394.1 CDS COXBURSA331_A0572 NC_010117.1 486443 487057 R ComF family protein complement(486443..487057) Coxiella burnetii RSA 331 5793505 YP_001596395.1 CDS COXBURSA331_A0573 NC_010117.1 487710 488555 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; putative methyltransferase 487710..488555 Coxiella burnetii RSA 331 5793329 YP_001596396.1 CDS xseB NC_010117.1 488556 488804 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(488556..488804) Coxiella burnetii RSA 331 5793810 YP_001596397.1 CDS COXBURSA331_A0575 NC_010117.1 488817 489020 R hypothetical protein complement(488817..489020) Coxiella burnetii RSA 331 5793525 YP_001596398.1 CDS COXBURSA331_A0576 NC_010117.1 489067 489723 R identified by match to protein family HMM PF00156; putative phosphoribosyl transferase complement(489067..489723) Coxiella burnetii RSA 331 5792758 YP_001596399.1 CDS COXBURSA331_A0577 NC_010117.1 490059 490340 D identified by glimmer; putative; hypothetical protein 490059..490340 Coxiella burnetii RSA 331 5793533 YP_001596400.1 CDS COXBURSA331_A0578 NC_010117.1 490342 491541 D hypothetical protein 490342..491541 Coxiella burnetii RSA 331 5793571 YP_001596401.1 CDS recQ NC_010117.1 491614 493419 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ 491614..493419 Coxiella burnetii RSA 331 5793572 YP_001596402.1 CDS COXBURSA331_A0580 NC_010117.1 493462 493578 R identified by glimmer; putative; hypothetical protein complement(493462..493578) Coxiella burnetii RSA 331 5793489 YP_001596403.1 CDS bph2_1 NC_010117.1 493484 493873 D identified by match to protein family HMM PF00216; DNA-binding protein BpH2 493484..493873 Coxiella burnetii RSA 331 5793579 YP_001596404.1 CDS COXBURSA331_A0583 NC_010117.1 493885 494133 D identified by glimmer; putative; hypothetical protein 493885..494133 Coxiella burnetii RSA 331 5793587 YP_001596405.1 CDS COXBURSA331_A0582 NC_010117.1 494100 494222 R identified by glimmer; putative; hypothetical protein complement(494100..494222) Coxiella burnetii RSA 331 5794087 YP_001596406.1 CDS COXBURSA331_A0584 NC_010117.1 494152 494274 R identified by glimmer; putative; hypothetical protein complement(494152..494274) Coxiella burnetii RSA 331 5794396 YP_001596407.1 CDS COXBURSA331_A0585 NC_010117.1 494217 494396 D identified by glimmer; putative; hypothetical protein 494217..494396 Coxiella burnetii RSA 331 5793605 YP_001596408.1 CDS COXBURSA331_A0586 NC_010117.1 494393 496357 D identified by glimmer; putative; hypothetical protein 494393..496357 Coxiella burnetii RSA 331 5793634 YP_001596409.1 CDS kdsB NC_010117.1 497055 497804 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 497055..497804 Coxiella burnetii RSA 331 5793820 YP_001596410.1 CDS argR NC_010117.1 497788 498267 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor complement(497788..498267) Coxiella burnetii RSA 331 5794447 YP_001596411.1 CDS artP NC_010117.1 498361 499113 D identified by match to protein family HMM PF00005; arginine ABC transporter ATP-binding protein 498361..499113 Coxiella burnetii RSA 331 5793632 YP_001596412.1 CDS artI NC_010117.1 499117 499926 D identified by match to protein family HMM PF00497; arginine ABC transporter periplasmic arginine-binding protein 499117..499926 Coxiella burnetii RSA 331 5793507 YP_001596413.1 CDS artQ NC_010117.1 499926 500591 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; arginine ABC transporter permease 499926..500591 Coxiella burnetii RSA 331 5793636 YP_001596414.1 CDS artM NC_010117.1 500588 501259 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease 500588..501259 Coxiella burnetii RSA 331 5793827 YP_001596415.1 CDS COXBURSA331_A0594 NC_010117.1 501272 502888 D hypothetical protein 501272..502888 Coxiella burnetii RSA 331 5793643 YP_001596416.1 CDS COXBURSA331_A0595 NC_010117.1 502948 505104 R identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease complement(502948..505104) Coxiella burnetii RSA 331 5793511 YP_001596417.1 CDS rluC NC_010117.1 505433 506359 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase C 505433..506359 Coxiella burnetii RSA 331 5794404 YP_001596418.1 CDS COXBURSA331_A0597 NC_010117.1 506388 507095 D identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 506388..507095 Coxiella burnetii RSA 331 5793554 YP_001596419.1 CDS COXBURSA331_A0598 NC_010117.1 507187 508221 R identified by match to protein family HMM PF02253; phospholipase A1 complement(507187..508221) Coxiella burnetii RSA 331 5794000 YP_001596420.1 CDS COXBURSA331_A0599 NC_010117.1 508277 510013 R identified by match to protein family HMM PF02811; DNA-binding/PHP domain-containing protein complement(508277..510013) Coxiella burnetii RSA 331 5793268 YP_001596421.1 CDS rpmF NC_010117.1 510205 510399 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 510205..510399 Coxiella burnetii RSA 331 5793709 YP_001596422.1 CDS plsX NC_010117.1 510407 511438 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 510407..511438 Coxiella burnetii RSA 331 5793438 YP_001596423.1 CDS fabH NC_010117.1 511435 512394 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 511435..512394 Coxiella burnetii RSA 331 5793574 YP_001596424.1 CDS fabD NC_010117.1 512493 513434 D identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 512493..513434 Coxiella burnetii RSA 331 5793714 YP_001596425.1 CDS fabG NC_010117.1 513510 514259 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; match to protein family HMM TIGR01830; 3-oxoacyl-(acyl-carrier-protein) reductase 513510..514259 Coxiella burnetii RSA 331 5793721 YP_001596426.1 CDS acpP NC_010117.1 514327 514581 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 514327..514581 Coxiella burnetii RSA 331 5793724 YP_001596427.1 CDS fabF NC_010117.1 514626 515870 D identified by match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM TIGR03150; 3-oxoacyl-ACP synthase 514626..515870 Coxiella burnetii RSA 331 5794076 YP_001596428.1 CDS COXBURSA331_A0607 NC_010117.1 515880 516992 D identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 515880..516992 Coxiella burnetii RSA 331 5793727 YP_001596429.1 CDS tmk NC_010117.1 516902 517573 D identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase 516902..517573 Coxiella burnetii RSA 331 5793469 YP_001596430.1 CDS holB NC_010117.1 517570 518529 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 517570..518529 Coxiella burnetii RSA 331 5793732 YP_001596431.1 CDS COXBURSA331_A0611 NC_010117.1 518693 519460 D identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase 518693..519460 Coxiella burnetii RSA 331 5794510 YP_001596432.1 CDS COXBURSA331_A0610 NC_010117.1 519476 519568 R identified by glimmer; putative; hypothetical protein complement(519476..519568) Coxiella burnetii RSA 331 5793748 YP_001596433.1 CDS COXBURSA331_A0613 NC_010117.1 519575 519847 D identified by glimmer; putative; hypothetical protein 519575..519847 Coxiella burnetii RSA 331 5793331 YP_001596434.1 CDS COXBURSA331_A0612 NC_010117.1 519844 520908 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A complement(519844..520908) Coxiella burnetii RSA 331 5794394 YP_001596435.1 CDS glnA NC_010117.1 521023 522102 R identified by match to protein family HMM PF00120; match to protein family HMM PF03951; glutamine synthetase complement(521023..522102) Coxiella burnetii RSA 331 5794277 YP_001596436.1 CDS COXBURSA331_A0615 NC_010117.1 522265 523743 R identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; proton/peptide symporter family protein complement(522265..523743) Coxiella burnetii RSA 331 5793791 YP_001596437.1 CDS COXBURSA331_A0616 NC_010117.1 523863 524480 R identified by match to protein family HMM PF00583; acetyltransferase complement(523863..524480) Coxiella burnetii RSA 331 5794012 YP_001596438.1 CDS recJ NC_010117.1 524920 526644 D identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 524920..526644 Coxiella burnetii RSA 331 5793817 YP_001596439.1 CDS COXBURSA331_A0617 NC_010117.1 526631 526750 R identified by glimmer; putative; hypothetical protein complement(526631..526750) Coxiella burnetii RSA 331 5793771 YP_001596440.1 CDS COXBURSA331_A0619 NC_010117.1 526716 527741 R hypothetical protein complement(526716..527741) Coxiella burnetii RSA 331 5792703 YP_001596441.1 CDS COXBURSA331_A0620 NC_010117.1 527965 528678 R identified by glimmer; putative; hypothetical protein complement(527965..528678) Coxiella burnetii RSA 331 5793604 YP_001596442.1 CDS trpR NC_010117.1 528728 529072 D When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 528728..529072 Coxiella burnetii RSA 331 5793884 YP_001596443.1 CDS COXBURSA331_A0622 NC_010117.1 529085 529387 D identified by glimmer; putative; hypothetical protein 529085..529387 Coxiella burnetii RSA 331 5793918 YP_001596444.1 CDS COXBURSA331_A0625 NC_010117.1 532254 533402 D hypothetical protein 532254..533402 Coxiella burnetii RSA 331 5793938 YP_001596445.1 CDS COXBURSA331_A0626 NC_010117.1 533402 534193 D hypothetical protein 533402..534193 Coxiella burnetii RSA 331 5793939 YP_001596446.1 CDS COXBURSA331_A0627 NC_010117.1 534864 536183 D identified by match to protein family HMM PF07690; major facilitator family transporter 534864..536183 Coxiella burnetii RSA 331 5793983 YP_001596447.1 CDS COXBURSA331_A0628 NC_010117.1 536281 536397 D identified by glimmer; putative; hypothetical protein 536281..536397 Coxiella burnetii RSA 331 5793621 YP_001596448.1 CDS aspC NC_010117.1 537415 538599 R identified by match to protein family HMM PF00155; aspartate aminotransferase complement(537415..538599) Coxiella burnetii RSA 331 5792730 YP_001596449.1 CDS uvrB NC_010117.1 538680 540698 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 538680..540698 Coxiella burnetii RSA 331 5794041 YP_001596450.1 CDS COXBURSA331_A0632 NC_010117.1 540758 541366 D identified by match to protein family HMM PF09335; DedA family protein 540758..541366 Coxiella burnetii RSA 331 5794054 YP_001596451.1 CDS leuA NC_010117.1 541396 542295 R identified by match to protein family HMM PF00682; hydroxymethylglutaryl-CoA lyase complement(541396..542295) Coxiella burnetii RSA 331 5794056 YP_001596452.1 CDS COXBURSA331_A0634 NC_010117.1 542282 543637 R Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; N-ethylammeline chlorohydrolase complement(542282..543637) Coxiella burnetii RSA 331 5794065 YP_001596453.1 CDS COXBURSA331_A0635 NC_010117.1 543912 544082 D identified by glimmer; putative; hypothetical protein 543912..544082 Coxiella burnetii RSA 331 5794070 YP_001596454.1 CDS COXBURSA331_A0637 NC_010117.1 544329 544601 D identified by glimmer; putative; hypothetical protein 544329..544601 Coxiella burnetii RSA 331 5794046 YP_001596455.1 CDS COXBURSA331_A0636 NC_010117.1 544598 545617 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A complement(544598..545617) Coxiella burnetii RSA 331 5793625 YP_001596456.1 CDS gyrA NC_010117.1 545931 548477 D identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase subunit A 545931..548477 Coxiella burnetii RSA 331 5794582 YP_001596457.1 CDS serC NC_010117.1 548538 549620 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 548538..549620 Coxiella burnetii RSA 331 5794091 YP_001596458.1 CDS aroA NC_010117.1 549626 550942 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 549626..550942 Coxiella burnetii RSA 331 5794596 YP_001596459.1 CDS cmk NC_010117.1 550943 551656 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 550943..551656 Coxiella burnetii RSA 331 5794095 YP_001596460.1 CDS rpsA NC_010117.1 551800 553455 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 551800..553455 Coxiella burnetii RSA 331 5794039 YP_001596461.1 CDS COXBURSA331_A0643 NC_010117.1 553610 553900 D identified by glimmer; putative; hypothetical protein 553610..553900 Coxiella burnetii RSA 331 5794205 YP_001596462.1 CDS COXBURSA331_A0644 NC_010117.1 553900 555066 D identified by match to protein family HMM PF00515; tetratricopeptide repeat protein 553900..555066 Coxiella burnetii RSA 331 5793677 YP_001596463.1 CDS pyrF NC_010117.1 555070 555780 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 555070..555780 Coxiella burnetii RSA 331 5793498 YP_001596464.1 CDS COXBURSA331_A0646 NC_010117.1 555873 556214 D identified by match to protein family HMM TIGR00426; helix-hairpin-helix repeat-containing competence protein ComEA 555873..556214 Coxiella burnetii RSA 331 5793839 YP_001596465.1 CDS COXBURSA331_A0647 NC_010117.1 556215 556352 D identified by glimmer; putative; hypothetical protein 556215..556352 Coxiella burnetii RSA 331 5794804 YP_001596466.1 CDS COXBURSA331_A0648 NC_010117.1 556426 557493 D identified by match to protein family HMM PF00953; putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase 556426..557493 Coxiella burnetii RSA 331 5794301 YP_001596467.1 CDS COXBURSA331_A0649 NC_010117.1 557616 558812 R identified by glimmer; putative; hypothetical protein complement(557616..558812) Coxiella burnetii RSA 331 5794551 YP_001596468.1 CDS COXBURSA331_A0650 NC_010117.1 558990 559961 D identified by match to protein family HMM PF05036; match to protein family HMM PF08238; sporulation and cell division repeat-containing protein 558990..559961 Coxiella burnetii RSA 331 5794399 YP_001596469.1 CDS COXBURSA331_A0651 NC_010117.1 559995 560117 R identified by glimmer; putative; hypothetical protein complement(559995..560117) Coxiella burnetii RSA 331 5794520 YP_001596470.1 CDS tppB NC_010117.1 560738 562252 D identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; tripeptide permease TppB 560738..562252 Coxiella burnetii RSA 331 5793831 YP_001596471.1 CDS smc NC_010117.1 562431 565940 D identified by match to protein family HMM PF02463; match to protein family HMM TIGR02168; chromosome segregation protein SMC 562431..565940 Coxiella burnetii RSA 331 5794622 YP_001596472.1 CDS zipA NC_010117.1 566010 566687 D identified by match to protein family HMM PF04354; match to protein family HMM TIGR02205; cell division protein ZipA 566010..566687 Coxiella burnetii RSA 331 5794680 YP_001596473.1 CDS ligA NC_010117.1 566697 568709 D identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; NAD-dependent DNA ligase 566697..568709 Coxiella burnetii RSA 331 5794484 YP_001596474.1 CDS COXBURSA331_A0657 NC_010117.1 570901 571791 D identified by glimmer; putative; hypothetical protein 570901..571791 Coxiella burnetii RSA 331 5794457 YP_001596475.1 CDS COXBURSA331_A0658 NC_010117.1 571894 572316 D identified by glimmer; putative; hypothetical protein 571894..572316 Coxiella burnetii RSA 331 5792724 YP_001596476.1 CDS COXBURSA331_A0659 NC_010117.1 572444 573022 D identified by match to protein family HMM PF04011; LemA family protein 572444..573022 Coxiella burnetii RSA 331 5792698 YP_001596477.1 CDS COXBURSA331_A0660 NC_010117.1 573032 574078 D putative metalloprotease; heat shock protein HtpX 573032..574078 Coxiella burnetii RSA 331 5794555 YP_001596478.1 CDS COXBURSA331_A0661 NC_010117.1 574119 575804 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; match to protein family HMM PF08241; match to protein family HMM PF08242; TPR repeat-containing methyltransferase complement(574119..575804) Coxiella burnetii RSA 331 5792869 YP_001596479.1 CDS mltB NC_010117.1 575785 576789 R identified by match to protein family HMM TIGR02282; lytic murein transglycosylase B complement(575785..576789) Coxiella burnetii RSA 331 5794488 YP_001596480.1 CDS mrdB NC_010117.1 576869 577957 R identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; rod shape-determining protein RodA complement(576869..577957) Coxiella burnetii RSA 331 5794479 YP_001596481.1 CDS pbpA NC_010117.1 578060 579898 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein complement(578060..579898) Coxiella burnetii RSA 331 5794492 YP_001596482.1 CDS COXBURSA331_A0666 NC_010117.1 580383 580733 R identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap family protein complement(580383..580733) Coxiella burnetii RSA 331 5792697 YP_001596483.1 CDS COXBURSA331_A0668 NC_010117.1 580933 581952 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 580933..581952 Coxiella burnetii RSA 331 5794671 YP_001596484.1 CDS COXBURSA331_A0667 NC_010117.1 581949 582221 R identified by glimmer; putative; hypothetical protein complement(581949..582221) Coxiella burnetii RSA 331 5793164 YP_001596485.1 CDS COXBURSA331_A0669 NC_010117.1 582315 582518 R identified by glimmer; putative; hypothetical protein complement(582315..582518) Coxiella burnetii RSA 331 5794619 YP_001596486.1 CDS nadD NC_010117.1 582724 583371 R identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(582724..583371) Coxiella burnetii RSA 331 5794676 YP_001596487.1 CDS holA NC_010117.1 583373 584392 R identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128; DNA polymerase III subunit delta complement(583373..584392) Coxiella burnetii RSA 331 5794903 YP_001596488.1 CDS COXBURSA331_A0672 NC_010117.1 584395 585015 R hypothetical protein complement(584395..585015) Coxiella burnetii RSA 331 5794814 YP_001596489.1 CDS leuS NC_010117.1 584936 587398 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(584936..587398) Coxiella burnetii RSA 331 5793291 YP_001596490.1 CDS COXBURSA331_A0674 NC_010117.1 587538 588770 D identified by glimmer; putative; hypothetical protein 587538..588770 Coxiella burnetii RSA 331 5794905 YP_001596491.1 CDS COXBURSA331_A0676 NC_010117.1 589518 589658 D identified by glimmer; putative; hypothetical protein 589518..589658 Coxiella burnetii RSA 331 5794013 YP_001596492.1 CDS COXBURSA331_A0677 NC_010117.1 589660 590940 R putative ATP-binding protein complement(589660..590940) Coxiella burnetii RSA 331 5793616 YP_001596493.1 CDS lnt NC_010117.1 591055 592512 R identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546; apolipoprotein N-acyltransferase complement(591055..592512) Coxiella burnetii RSA 331 5794409 YP_001596494.1 CDS COXBURSA331_A0679 NC_010117.1 592505 593344 R identified by match to protein family HMM PF00571; match to protein family HMM PF03471; putative magnesium and cobalt efflux protein corC complement(592505..593344) Coxiella burnetii RSA 331 5793738 YP_001596495.1 CDS COXBURSA331_A0680 NC_010117.1 593399 594730 R identified by match to protein family HMM PF07690; major facilitator family transporter complement(593399..594730) Coxiella burnetii RSA 331 5792720 YP_001596496.1 CDS COXBURSA331_A0681 NC_010117.1 594720 595178 R identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein complement(594720..595178) Coxiella burnetii RSA 331 5793597 YP_001596497.1 CDS COXBURSA331_A0682 NC_010117.1 595175 596146 R identified by match to protein family HMM PF02562; PhoH family protein complement(595175..596146) Coxiella burnetii RSA 331 5794437 YP_001596498.1 CDS miaB NC_010117.1 596157 597476 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(596157..597476) Coxiella burnetii RSA 331 5793523 YP_001596499.1 CDS COXBURSA331_A0684 NC_010117.1 597497 599179 R identified by match to protein family HMM PF00324; amino acid permease family protein complement(597497..599179) Coxiella burnetii RSA 331 5793853 YP_001596500.1 CDS COXBURSA331_A0686 NC_010117.1 600145 601521 D identified by match to protein family HMM PF00883; cytosol aminopeptidase 600145..601521 Coxiella burnetii RSA 331 5793898 YP_001596501.1 CDS fadE NC_010117.1 601531 603678 D functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 601531..603678 Coxiella burnetii RSA 331 5793521 YP_001596502.1 CDS COXBURSA331_A0688 NC_010117.1 604095 604220 R identified by glimmer; putative; hypothetical protein complement(604095..604220) Coxiella burnetii RSA 331 5794294 YP_001596503.1 CDS COXBURSA331_A0689 NC_010117.1 604223 605518 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 604223..605518 Coxiella burnetii RSA 331 5793737 YP_001596504.1 CDS COXBURSA331_A0690 NC_010117.1 605593 607620 D identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; putative fatty oxidation complex subunit alpha 605593..607620 Coxiella burnetii RSA 331 5793682 YP_001596505.1 CDS COXBURSA331_A0691 NC_010117.1 607617 608384 D hypothetical protein 607617..608384 Coxiella burnetii RSA 331 5794436 YP_001596506.1 CDS COXBURSA331_A0692 NC_010117.1 608397 609371 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(608397..609371) Coxiella burnetii RSA 331 5794906 YP_001596507.1 CDS COXBURSA331_A0693 NC_010117.1 609358 610851 R hypothetical protein complement(609358..610851) Coxiella burnetii RSA 331 5793927 YP_001596508.1 CDS COXBURSA331_A0695 NC_010117.1 610976 611797 D hypothetical protein 610976..611797 Coxiella burnetii RSA 331 5794025 YP_001596509.1 CDS COXBURSA331_A0694 NC_010117.1 611767 612102 R identified by match to protein family HMM PF00037; ferrodoxin complement(611767..612102) Coxiella burnetii RSA 331 5792841 YP_001596510.1 CDS COXBURSA331_A0696 NC_010117.1 612175 612414 D identified by match to protein family HMM PF01722; BolA family protein 612175..612414 Coxiella burnetii RSA 331 5793105 YP_001596511.1 CDS COXBURSA331_A0697 NC_010117.1 612417 612716 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; glutaredoxin family protein 612417..612716 Coxiella burnetii RSA 331 5794433 YP_001596512.1 CDS COXBURSA331_A0698 NC_010117.1 612739 612888 D identified by glimmer; putative; hypothetical protein 612739..612888 Coxiella burnetii RSA 331 5792715 YP_001596513.1 CDS COXBURSA331_A0699 NC_010117.1 613271 613474 R identified by glimmer; putative; hypothetical protein complement(613271..613474) Coxiella burnetii RSA 331 5794674 YP_001596514.1 CDS COXBURSA331_A0700 NC_010117.1 613535 617041 D hypothetical protein 613535..617041 Coxiella burnetii RSA 331 5793355 YP_001596515.1 CDS COXBURSA331_A0701 NC_010117.1 617085 617408 D identified by match to protein family HMM PF00581; thiosulfate sulfurtransferase GlpE 617085..617408 Coxiella burnetii RSA 331 5793087 YP_001596516.1 CDS nadA NC_010117.1 617488 618483 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 617488..618483 Coxiella burnetii RSA 331 5793541 YP_001596517.1 CDS COXBURSA331_A0703 NC_010117.1 618480 618878 D ferredoxin 2fe-2s 618480..618878 Coxiella burnetii RSA 331 5792711 YP_001596518.1 CDS COXBURSA331_A0704 NC_010117.1 618875 619048 D identified by glimmer; putative; hypothetical protein 618875..619048 Coxiella burnetii RSA 331 5793545 YP_001596519.1 CDS COXBURSA331_A0705 NC_010117.1 619055 619879 D hypothetical protein 619055..619879 Coxiella burnetii RSA 331 5792913 YP_001596520.1 CDS COXBURSA331_A0706 NC_010117.1 619887 620198 D identified by glimmer; putative; hypothetical protein 619887..620198 Coxiella burnetii RSA 331 5793957 YP_001596521.1 CDS COXBURSA331_A0708 NC_010117.1 621318 622082 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(621318..622082) Coxiella burnetii RSA 331 5793565 YP_001596522.1 CDS COXBURSA331_A0709 NC_010117.1 622170 622292 R identified by glimmer; putative; hypothetical protein complement(622170..622292) Coxiella burnetii RSA 331 5793923 YP_001596523.1 CDS COXBURSA331_A0710 NC_010117.1 622681 623808 R identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539; putative oxygen-independent coproporphyrinogen III oxidase complement(622681..623808) Coxiella burnetii RSA 331 5792699 YP_001596524.1 CDS cysQ1 NC_010117.1 624411 625226 D identified by match to protein family HMM PF00459; match to protein family HMM TIGR01331; 3'(2'),5'-bisphosphate nucleotidase 624411..625226 Coxiella burnetii RSA 331 5793856 YP_001596525.1 CDS COXBURSA331_A0714 NC_010117.1 625320 626339 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 625320..626339 Coxiella burnetii RSA 331 5794459 YP_001596526.1 CDS COXBURSA331_A0713 NC_010117.1 626336 626608 R identified by glimmer; putative; hypothetical protein complement(626336..626608) Coxiella burnetii RSA 331 5793875 YP_001596527.1 CDS COXBURSA331_A0715 NC_010117.1 626995 628392 D identified by glimmer; putative; hypothetical protein 626995..628392 Coxiella burnetii RSA 331 5792733 YP_001596528.1 CDS COXBURSA331_A0716 NC_010117.1 628720 628878 R identified by glimmer; putative; hypothetical protein complement(628720..628878) Coxiella burnetii RSA 331 5792719 YP_001596529.1 CDS COXBURSA331_A0717 NC_010117.1 629124 629288 R identified by glimmer; putative; hypothetical protein complement(629124..629288) Coxiella burnetii RSA 331 5793755 YP_001596530.1 CDS COXBURSA331_A0718 NC_010117.1 629338 629832 R identified by glimmer; putative; hypothetical protein complement(629338..629832) Coxiella burnetii RSA 331 5793994 YP_001596531.1 CDS COXBURSA331_A0719 NC_010117.1 629981 630499 D identified by glimmer; putative; hypothetical protein 629981..630499 Coxiella burnetii RSA 331 5794754 YP_001596532.1 CDS mvaD/idi NC_010117.1 631296 632807 R identified by match to protein family HMM PF00288; match to protein family HMM PF00293; match to protein family HMM PF08544; match to protein family HMM TIGR01240; match to protein family HMM TIGR02150; diphosphomevalonate decarboxylase/isopentenyl-diphosphate delta-isomerase complement(631296..632807) Coxiella burnetii RSA 331 5793678 YP_001596533.1 CDS mvk NC_010117.1 632800 633741 R identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR00549; mevalonate kinase complement(632800..633741) Coxiella burnetii RSA 331 5793060 YP_001596534.1 CDS COXBURSA331_A0722 NC_010117.1 633840 634862 R identified by match to protein family HMM PF00288; match to protein family HMM TIGR00549; putative phopshomevalonate kinase complement(633840..634862) Coxiella burnetii RSA 331 5794792 YP_001596535.1 CDS hmgA NC_010117.1 634859 635926 R identified by match to protein family HMM PF00368; hydroxymethylglutaryl-CoA reductase (NADPH) complement(634859..635926) Coxiella burnetii RSA 331 5794777 YP_001596536.1 CDS yaeT NC_010117.1 636112 638523 D identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303; outer membrane protein assembly complex, YaeT protein 636112..638523 Coxiella burnetii RSA 331 5794767 YP_001596537.1 CDS COXBURSA331_A0725 NC_010117.1 638601 639098 D identified by match to protein family HMM PF03938; putative outer membrane chaperone protein Skp 638601..639098 Coxiella burnetii RSA 331 5794773 YP_001596538.1 CDS lpxD NC_010117.1 639108 640136 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 639108..640136 Coxiella burnetii RSA 331 5794888 YP_001596539.1 CDS fabZ NC_010117.1 640142 640570 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 640142..640570 Coxiella burnetii RSA 331 5794669 YP_001596540.1 CDS lpxA NC_010117.1 640575 641354 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 640575..641354 Coxiella burnetii RSA 331 5794687 YP_001596541.1 CDS COXBURSA331_A0729 NC_010117.1 641396 641941 D hypothetical protein 641396..641941 Coxiella burnetii RSA 331 5793367 YP_001596542.1 CDS COXBURSA331_A0730 NC_010117.1 642034 643566 R hypothetical protein complement(642034..643566) Coxiella burnetii RSA 331 5793190 YP_001596543.1 CDS COXBURSA331_A0731 NC_010117.1 643556 644701 R identified by match to protein family HMM PF01757; acyltransferase family protein complement(643556..644701) Coxiella burnetii RSA 331 5794407 YP_001596544.1 CDS COXBURSA331_A0732 NC_010117.1 644705 645193 R identified by glimmer; putative; hypothetical protein complement(644705..645193) Coxiella burnetii RSA 331 5792895 YP_001596545.1 CDS COXBURSA331_A0734 NC_010117.1 645302 645574 D identified by glimmer; putative; hypothetical protein 645302..645574 Coxiella burnetii RSA 331 5793462 YP_001596546.1 CDS COXBURSA331_A0733 NC_010117.1 645571 646590 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A complement(645571..646590) Coxiella burnetii RSA 331 5794677 YP_001596547.1 CDS lpxB NC_010117.1 646725 647855 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(646725..647855) Coxiella burnetii RSA 331 5794660 YP_001596548.1 CDS COXBURSA331_A0736 NC_010117.1 647845 648828 R identified by match to protein family HMM PF01408; oxidoreductase, NAD-binding complement(647845..648828) Coxiella burnetii RSA 331 5794628 YP_001596549.1 CDS tadA NC_010117.1 649020 649466 D identified by match to protein family HMM PF00383; tRNA-specific adenosine deaminase 649020..649466 Coxiella burnetii RSA 331 5794639 YP_001596550.1 CDS COXBURSA331_A0738 NC_010117.1 649471 649593 D identified by glimmer; putative; hypothetical protein 649471..649593 Coxiella burnetii RSA 331 5794518 YP_001596551.1 CDS COXBURSA331_A0739 NC_010117.1 649904 650017 D identified by glimmer; putative; hypothetical protein 649904..650017 Coxiella burnetii RSA 331 5793357 YP_001596552.1 CDS COXBURSA331_A0740 NC_010117.1 650028 650435 D identified by glimmer; putative; hypothetical protein 650028..650435 Coxiella burnetii RSA 331 5793941 YP_001596553.1 CDS COXBURSA331_A0741 NC_010117.1 650691 652631 D identified by glimmer; putative; hypothetical protein 650691..652631 Coxiella burnetii RSA 331 5793253 YP_001596554.1 CDS COXBURSA331_A0742 NC_010117.1 652757 652870 R identified by glimmer; putative; hypothetical protein complement(652757..652870) Coxiella burnetii RSA 331 5792949 YP_001596555.1 CDS ppa NC_010117.1 653016 653543 D identified by match to protein family HMM PF00719; inorganic diphosphatase 653016..653543 Coxiella burnetii RSA 331 5792861 YP_001596556.1 CDS putA NC_010117.1 653662 656802 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 653662..656802 Coxiella burnetii RSA 331 5793477 YP_001596557.1 CDS mip NC_010117.1 656875 657567 D identified by match to protein family HMM PF00254; match to protein family HMM PF01346; peptidyl-prolyl cis-trans isomerase Mip 656875..657567 Coxiella burnetii RSA 331 5793982 YP_001596558.1 CDS purL NC_010117.1 657693 661583 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 657693..661583 Coxiella burnetii RSA 331 5793324 YP_001596559.1 CDS COXBURSA331_A0747 NC_010117.1 661643 661942 R hypothetical protein complement(661643..661942) Coxiella burnetii RSA 331 5794598 YP_001596560.1 CDS COXBURSA331_A0748 NC_010117.1 662126 664018 D identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; putative aerobic respiration control sensor protein arcB 662126..664018 Coxiella burnetii RSA 331 5794334 YP_001596561.1 CDS COXBURSA331_A0750 NC_010117.1 665569 666462 D identified by match to protein family HMM PF00892; UAA family protein 665569..666462 Coxiella burnetii RSA 331 5794575 YP_001596562.1 CDS COXBURSA331_A0751 NC_010117.1 666481 667242 R identified by glimmer; putative; hypothetical protein complement(666481..667242) Coxiella burnetii RSA 331 5794578 YP_001596563.1 CDS pdhC NC_010117.1 667659 668795 R identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(667659..668795) Coxiella burnetii RSA 331 5794545 YP_001596564.1 CDS pdhB NC_010117.1 668795 669775 R identified by match to protein family HMM PF02779; match to protein family HMM PF02780; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit beta complement(668795..669775) Coxiella burnetii RSA 331 5794556 YP_001596565.1 CDS pdhA NC_010117.1 669980 671086 R identified by match to protein family HMM PF00676; match to protein family HMM TIGR03181; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha complement(669980..671086) Coxiella burnetii RSA 331 5794322 YP_001596566.1 CDS COXBURSA331_A0755 NC_010117.1 671083 672177 R identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Glu/Leu/Phe/Val dehydrogenase complement(671083..672177) Coxiella burnetii RSA 331 5793799 YP_001596567.1 CDS COXBURSA331_A0756 NC_010117.1 672285 673019 D identified by match to protein family HMM PF03009; putative glycerophosphoryl diester phosphodiesterase 672285..673019 Coxiella burnetii RSA 331 5793563 YP_001596568.1 CDS ribD NC_010117.1 673016 674080 D identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 673016..674080 Coxiella burnetii RSA 331 5794405 YP_001596569.1 CDS COXBURSA331_A0757 NC_010117.1 674058 674396 R hypothetical protein complement(674058..674396) Coxiella burnetii RSA 331 5792731 YP_001596570.1 CDS COXBURSA331_A0759 NC_010117.1 674402 674665 R identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552; prevent-host-death family protein complement(674402..674665) Coxiella burnetii RSA 331 5793818 YP_001596571.1 CDS COXBURSA331_A0760 NC_010117.1 674664 674810 D identified by glimmer; putative; hypothetical protein 674664..674810 Coxiella burnetii RSA 331 5792987 YP_001596572.1 CDS ribE NC_010117.1 675035 675643 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 675035..675643 Coxiella burnetii RSA 331 5793958 YP_001596573.1 CDS ribAB NC_010117.1 675627 676847 D identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; riboflavin biosynthesis protein RibA 675627..676847 Coxiella burnetii RSA 331 5794165 YP_001596574.1 CDS ribH NC_010117.1 676844 677299 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 676844..677299 Coxiella burnetii RSA 331 5794346 YP_001596575.1 CDS COXBURSA331_A0764 NC_010117.1 677292 678383 D identified by match to protein family HMM PF01594; hypothetical protein 677292..678383 Coxiella burnetii RSA 331 5793516 YP_001596576.1 CDS COXBURSA331_A0765 NC_010117.1 678340 678462 D identified by glimmer; putative; hypothetical protein 678340..678462 Coxiella burnetii RSA 331 5792776 YP_001596577.1 CDS COXBURSA331_A0766 NC_010117.1 678556 678756 D identified by glimmer; putative; hypothetical protein 678556..678756 Coxiella burnetii RSA 331 5794489 YP_001596578.1 CDS COXBURSA331_A0767 NC_010117.1 678822 679364 D identified by glimmer; putative; hypothetical protein 678822..679364 Coxiella burnetii RSA 331 5793352 YP_001596579.1 CDS COXBURSA331_A2232 NC_010117.1 679814 680053 D identified by glimmer; putative; hypothetical protein 679814..680053 Coxiella burnetii RSA 331 5792852 YP_001596580.1 CDS COXBURSA331_A0769 NC_010117.1 680060 680656 D identified by glimmer; putative; hypothetical protein 680060..680656 Coxiella burnetii RSA 331 5792737 YP_001596581.1 CDS COXBURSA331_A0770 NC_010117.1 680680 681162 D identified by glimmer; putative; hypothetical protein 680680..681162 Coxiella burnetii RSA 331 5792691 YP_001596582.1 CDS COXBURSA331_A0772 NC_010117.1 682175 682507 R identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein complement(682175..682507) Coxiella burnetii RSA 331 5794469 YP_001596583.1 CDS recR NC_010117.1 682521 683126 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(682521..683126) Coxiella burnetii RSA 331 5793649 YP_001596584.1 CDS COXBURSA331_A0774 NC_010117.1 683138 683569 R identified by glimmer; putative; hypothetical protein complement(683138..683569) Coxiella burnetii RSA 331 5794304 YP_001596585.1 CDS dnaX NC_010117.1 683679 685208 R identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397; DNA polymerase III subunits gamma and tau complement(683679..685208) Coxiella burnetii RSA 331 5793145 YP_001596586.1 CDS COXBURSA331_A0778 NC_010117.1 685774 686184 D hypothetical protein 685774..686184 Coxiella burnetii RSA 331 5793459 YP_001596587.1 CDS COXBURSA331_A0777 NC_010117.1 686181 686345 R identified by glimmer; putative; hypothetical protein complement(686181..686345) Coxiella burnetii RSA 331 5794044 YP_001596588.1 CDS COXBURSA331_A0779 NC_010117.1 686529 687674 D identified by match to protein family HMM PF01609; IS4 family transposase 686529..687674 Coxiella burnetii RSA 331 5792749 YP_001596589.1 CDS dapE NC_010117.1 688764 689888 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(688764..689888) Coxiella burnetii RSA 331 5792689 YP_001596590.1 CDS dapD NC_010117.1 689894 690709 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(689894..690709) Coxiella burnetii RSA 331 5793081 YP_001596591.1 CDS COXBURSA331_A0783 NC_010117.1 690706 690885 R identified by glimmer; putative; hypothetical protein complement(690706..690885) Coxiella burnetii RSA 331 5794077 YP_001596592.1 CDS COXBURSA331_A0784 NC_010117.1 690945 691058 D identified by glimmer; putative; hypothetical protein 690945..691058 Coxiella burnetii RSA 331 5794093 YP_001596593.1 CDS COXBURSA331_A0786 NC_010117.1 691336 692571 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; putative ATP-dependent RNA helicase rhlE 691336..692571 Coxiella burnetii RSA 331 5793255 YP_001596594.1 CDS COXBURSA331_A0790 NC_010117.1 693009 694442 D identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 693009..694442 Coxiella burnetii RSA 331 5792714 YP_001596595.1 CDS COXBURSA331_A0791 NC_010117.1 696036 696581 R identified by match to protein family HMM PF08645; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; histidinol-phosphate phosphatase family protein complement(696036..696581) Coxiella burnetii RSA 331 5794098 YP_001596596.1 CDS COXBURSA331_A0792 NC_010117.1 696575 697159 R SIS domain-containing protein complement(696575..697159) Coxiella burnetii RSA 331 5793430 YP_001596597.1 CDS COXBURSA331_A0793 NC_010117.1 697169 697912 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase complement(697169..697912) Coxiella burnetii RSA 331 5794504 YP_001596598.1 CDS COXBURSA331_A0794 NC_010117.1 698090 699103 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein 698090..699103 Coxiella burnetii RSA 331 5794089 YP_001596599.1 CDS COXBURSA331_A0795 NC_010117.1 699103 700137 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein 699103..700137 Coxiella burnetii RSA 331 5793578 YP_001596600.1 CDS COXBURSA331_A0796 NC_010117.1 700112 701692 D identified by match to protein family HMM PF00294; match to protein family HMM PF01467; match to protein family HMM TIGR00125; putative ADP-heptose synthase 700112..701692 Coxiella burnetii RSA 331 5793742 YP_001596601.1 CDS COXBURSA331_A0797 NC_010117.1 701695 702639 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase, NAD-binding 701695..702639 Coxiella burnetii RSA 331 5793832 YP_001596602.1 CDS COXBURSA331_A0798 NC_010117.1 702624 703934 D identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; UDP-glucose/GDP-mannose dehydrogenase family protein 702624..703934 Coxiella burnetii RSA 331 5793375 YP_001596603.1 CDS COXBURSA331_A0799 NC_010117.1 703927 704832 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 703927..704832 Coxiella burnetii RSA 331 5793312 YP_001596604.1 CDS COXBURSA331_A0801 NC_010117.1 704835 705488 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; putative methyltransferase 704835..705488 Coxiella burnetii RSA 331 5792718 YP_001596605.1 CDS COXBURSA331_A0800 NC_010117.1 705485 706672 R identified by match to protein family HMM TIGR01444; FkbM family methyltransferase complement(705485..706672) Coxiella burnetii RSA 331 5793433 YP_001596606.1 CDS COXBURSA331_A0802 NC_010117.1 707086 708504 D sulfotransferase domain-containing protein 707086..708504 Coxiella burnetii RSA 331 5794472 YP_001596607.1 CDS COXBURSA331_A0803 NC_010117.1 708949 712272 D identified by glimmer; putative; hypothetical protein 708949..712272 Coxiella burnetii RSA 331 5793310 YP_001596608.1 CDS pdhAB NC_010117.1 712503 713210 D identified by match to protein family HMM PF02780; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha/beta fusion protein 712503..713210 Coxiella burnetii RSA 331 5793486 YP_001596609.1 CDS COXBURSA331_A0805 NC_010117.1 713227 714870 D hypothetical protein 713227..714870 Coxiella burnetii RSA 331 5792883 YP_001596610.1 CDS wcaG NC_010117.1 715250 716248 D identified by match to protein family HMM PF01370; GDP-L-fucose synthase 715250..716248 Coxiella burnetii RSA 331 5793142 YP_001596611.1 CDS gmd NC_010117.1 716241 717287 D identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase 716241..717287 Coxiella burnetii RSA 331 5793296 YP_001596612.1 CDS COXBURSA331_A0808 NC_010117.1 717314 718153 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 717314..718153 Coxiella burnetii RSA 331 5793716 YP_001596613.1 CDS COXBURSA331_A0809 NC_010117.1 718146 719384 D identified by match to protein family HMM PF08421; match to protein family HMM PF08484; NDP-hexose 3-C-methyltransferase TylCIII 718146..719384 Coxiella burnetii RSA 331 5792984 YP_001596614.1 CDS COXBURSA331_A0810 NC_010117.1 719405 720466 R identified by match to protein family HMM PF02779; match to protein family HMM PF02780; putative pyruvate dehydrogenase (acetyl-transferring) E1 component subunit beta complement(719405..720466) Coxiella burnetii RSA 331 5793191 YP_001596615.1 CDS COXBURSA331_A0811 NC_010117.1 720463 721488 R identified by match to protein family HMM PF00676; putative pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha complement(720463..721488) Coxiella burnetii RSA 331 5793074 YP_001596616.1 CDS COXBURSA331_A0812 NC_010117.1 721639 722751 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(721639..722751) Coxiella burnetii RSA 331 5793374 YP_001596617.1 CDS COXBURSA331_A0813 NC_010117.1 722813 724189 R identified by glimmer; putative; hypothetical protein complement(722813..724189) Coxiella burnetii RSA 331 5794247 YP_001596618.1 CDS COXBURSA331_A0814 NC_010117.1 724182 725330 R identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212; DegT/DnrJ/EryC1/StrS aminotransferase family protein complement(724182..725330) Coxiella burnetii RSA 331 5794153 YP_001596619.1 CDS COXBURSA331_A0815 NC_010117.1 725367 726527 R identified by match to protein family HMM PF01041; DegT/DnrJ/EryC1/StrS aminotransferase family protein complement(725367..726527) Coxiella burnetii RSA 331 5792798 YP_001596620.1 CDS COXBURSA331_A0816 NC_010117.1 726550 727719 R identified by glimmer; putative; hypothetical protein complement(726550..727719) Coxiella burnetii RSA 331 5794128 YP_001596621.1 CDS COXBURSA331_A0817 NC_010117.1 727922 729481 D identified by glimmer; putative; hypothetical protein 727922..729481 Coxiella burnetii RSA 331 5793773 YP_001596622.1 CDS sat/cysC NC_010117.1 729517 731178 R in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from Escherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase complement(729517..731178) Coxiella burnetii RSA 331 5793284 YP_001596623.1 CDS cysQ2 NC_010117.1 731256 732080 R identified by match to protein family HMM PF00459; match to protein family HMM TIGR01331; 3'(2'),5'-bisphosphate nucleotidase complement(731256..732080) Coxiella burnetii RSA 331 5794450 YP_001596624.1 CDS COXBURSA331_A0820 NC_010117.1 732226 732975 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 732226..732975 Coxiella burnetii RSA 331 5794477 YP_001596625.1 CDS COXBURSA331_A0821 NC_010117.1 732985 733848 D identified by match to protein family HMM PF01061; putative lipopolysaccharide/O-antigen ABC transporter permease 732985..733848 Coxiella burnetii RSA 331 5793922 YP_001596626.1 CDS COXBURSA331_A0822 NC_010117.1 733858 734634 D identified by match to protein family HMM PF00005; lipopolysaccharide/O-antigen ABC transporter ATP-binding protein 733858..734634 Coxiella burnetii RSA 331 5794514 YP_001596627.1 CDS COXBURSA331_A0824 NC_010117.1 735346 735633 R identified by glimmer; putative; hypothetical protein complement(735346..735633) Coxiella burnetii RSA 331 5793842 YP_001596628.1 CDS COXBURSA331_A0826 NC_010117.1 736516 736806 R permease PerM, truncation complement(736516..736806) Coxiella burnetii RSA 331 5793325 YP_001596629.1 CDS COXBURSA331_A0828 NC_010117.1 737396 738229 R identified by glimmer; putative; hypothetical protein complement(737396..738229) Coxiella burnetii RSA 331 5794503 YP_001596630.1 CDS COXBURSA331_A0829 NC_010117.1 738537 738629 R identified by glimmer; putative; hypothetical protein complement(738537..738629) Coxiella burnetii RSA 331 5792985 YP_001596631.1 CDS COXBURSA331_A0830 NC_010117.1 739681 740316 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281; transcriptional regulator complement(739681..740316) Coxiella burnetii RSA 331 5793008 YP_001596632.1 CDS COXBURSA331_A0831 NC_010117.1 740375 741703 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; putative iorganic phosphate transporter complement(740375..741703) Coxiella burnetii RSA 331 5793022 YP_001596633.1 CDS COXBURSA331_A0832 NC_010117.1 741675 742058 R hypothetical protein complement(741675..742058) Coxiella burnetii RSA 331 5793189 YP_001596634.1 CDS COXBURSA331_A0834 NC_010117.1 743309 744229 R identified by match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase complement(743309..744229) Coxiella burnetii RSA 331 5793619 YP_001596635.1 CDS COXBURSA331_A0836 NC_010117.1 746280 746564 D identified by glimmer; putative; hypothetical protein 746280..746564 Coxiella burnetii RSA 331 5794499 YP_001596636.1 CDS COXBURSA331_A0837 NC_010117.1 746567 746986 D identified by glimmer; putative; hypothetical protein 746567..746986 Coxiella burnetii RSA 331 5792948 YP_001596637.1 CDS speB NC_010117.1 747042 747923 R identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; agmatinase complement(747042..747923) Coxiella burnetii RSA 331 5792953 YP_001596638.1 CDS COXBURSA331_A0839 NC_010117.1 747923 748981 R transforms a conserved lysine residue of initiation factor 5A into deoxyhypusine; deoxyhypusine synthase-like protein complement(747923..748981) Coxiella burnetii RSA 331 5794047 YP_001596639.1 CDS COXBURSA331_A0840 NC_010117.1 749008 750198 R identified by match to protein family HMM PF00278; match to protein family HMM PF02784; putative decarboxylase, pyridoxal-dependent complement(749008..750198) Coxiella burnetii RSA 331 5793872 YP_001596640.1 CDS COXBURSA331_A0842 NC_010117.1 750317 750484 D identified by glimmer; putative; hypothetical protein 750317..750484 Coxiella burnetii RSA 331 5792947 YP_001596641.1 CDS COXBURSA331_A0843 NC_010117.1 751593 752792 D identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 751593..752792 Coxiella burnetii RSA 331 5793004 YP_001596642.1 CDS COXBURSA331_A0844 NC_010117.1 752872 754881 D identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229; PAS/histidine kinase/ATPase domain-containing protein 752872..754881 Coxiella burnetii RSA 331 5794198 YP_001596643.1 CDS mutL NC_010117.1 754945 756669 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 754945..756669 Coxiella burnetii RSA 331 5794789 YP_001596644.1 CDS miaA NC_010117.1 756673 757608 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 756673..757608 Coxiella burnetii RSA 331 5794620 YP_001596645.1 CDS COXBURSA331_A0848 NC_010117.1 757723 757995 D identified by glimmer; putative; hypothetical protein 757723..757995 Coxiella burnetii RSA 331 5794721 YP_001596646.1 CDS COXBURSA331_A0847 NC_010117.1 757992 759011 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A complement(757992..759011) Coxiella burnetii RSA 331 5792837 YP_001596647.1 CDS COXBURSA331_A0849 NC_010117.1 759251 759520 D identified by glimmer; putative; hypothetical protein 759251..759520 Coxiella burnetii RSA 331 5794797 YP_001596648.1 CDS COXBURSA331_A0850 NC_010117.1 759593 760075 D identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 759593..760075 Coxiella burnetii RSA 331 5794802 YP_001596649.1 CDS COXBURSA331_A0851 NC_010117.1 760153 760749 D identified by match to protein family HMM PF06041; hypothetical protein 760153..760749 Coxiella burnetii RSA 331 5794881 YP_001596650.1 CDS COXBURSA331_A0852 NC_010117.1 760757 761095 D identified by match to protein family HMM PF08850; hypothetical protein 760757..761095 Coxiella burnetii RSA 331 5794857 YP_001596651.1 CDS nagZ NC_010117.1 761099 762040 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 761099..762040 Coxiella burnetii RSA 331 5794827 YP_001596652.1 CDS COXBURSA331_A0854 NC_010117.1 762182 763201 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 762182..763201 Coxiella burnetii RSA 331 5794783 YP_001596653.1 CDS COXBURSA331_A0855 NC_010117.1 763227 763469 R identified by glimmer; putative; hypothetical protein complement(763227..763469) Coxiella burnetii RSA 331 5794805 YP_001596654.1 CDS COXBURSA331_A0856 NC_010117.1 763476 763601 D identified by glimmer; putative; hypothetical protein 763476..763601 Coxiella burnetii RSA 331 5794810 YP_001596655.1 CDS COXBURSA331_A0857 NC_010117.1 763688 764839 D identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel (MscS) family protein 763688..764839 Coxiella burnetii RSA 331 5794817 YP_001596656.1 CDS COXBURSA331_A0858 NC_010117.1 764826 765386 D Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 764826..765386 Coxiella burnetii RSA 331 5794816 YP_001596657.1 CDS COXBURSA331_A0859 NC_010117.1 765408 765914 R hypothetical protein complement(765408..765914) Coxiella burnetii RSA 331 5794822 YP_001596658.1 CDS tgt NC_010117.1 765918 767075 R identified by match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449; queuine tRNA-ribosyltransferase complement(765918..767075) Coxiella burnetii RSA 331 5794824 YP_001596659.1 CDS COXBURSA331_A0861 NC_010117.1 767176 767307 R identified by glimmer; putative; hypothetical protein complement(767176..767307) Coxiella burnetii RSA 331 5794828 YP_001596660.1 CDS COXBURSA331_A0862 NC_010117.1 767258 767668 D identified by match to protein family HMM PF07681; DoxX family membrane protein 767258..767668 Coxiella burnetii RSA 331 5794825 YP_001596661.1 CDS COXBURSA331_A0863 NC_010117.1 767686 768504 R identified by match to protein family HMM PF00211; adenylate/guanylate cyclase family protein complement(767686..768504) Coxiella burnetii RSA 331 5794837 YP_001596662.1 CDS COXBURSA331_A0864 NC_010117.1 768529 769758 R identified by match to protein family HMM PF07695; intracellular signaling protein complement(768529..769758) Coxiella burnetii RSA 331 5794852 YP_001596663.1 CDS COXBURSA331_A0866 NC_010117.1 770333 771643 R hypothetical protein complement(770333..771643) Coxiella burnetii RSA 331 5794880 YP_001596664.1 CDS COXBURSA331_A0868 NC_010117.1 771798 772568 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 771798..772568 Coxiella burnetii RSA 331 5794882 YP_001596665.1 CDS COXBURSA331_A0869 NC_010117.1 774404 774958 D identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase 774404..774958 Coxiella burnetii RSA 331 5794733 YP_001596666.1 CDS COXBURSA331_A0870 NC_010117.1 774986 775270 D hypothetical protein 774986..775270 Coxiella burnetii RSA 331 5794820 YP_001596667.1 CDS COXBURSA331_A0871 NC_010117.1 775276 776682 R identified by glimmer; putative; hypothetical protein complement(775276..776682) Coxiella burnetii RSA 331 5794845 YP_001596668.1 CDS COXBURSA331_A0872 NC_010117.1 776816 777241 R identified by glimmer; putative; hypothetical protein complement(776816..777241) Coxiella burnetii RSA 331 5794858 YP_001596669.1 CDS scpA NC_010117.1 777674 778474 D identified by match to protein family HMM PF02616; segregation and condensation protein A 777674..778474 Coxiella burnetii RSA 331 5793613 YP_001596670.1 CDS scpB NC_010117.1 778479 779108 D identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281; segregation and condensation protein B 778479..779108 Coxiella burnetii RSA 331 5793097 YP_001596671.1 CDS COXBURSA331_A0877 NC_010117.1 779118 779852 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridine synthase family protein 779118..779852 Coxiella burnetii RSA 331 5794749 YP_001596672.1 CDS COXBURSA331_A0876 NC_010117.1 779823 781109 R identified by match to protein family HMM PF08014; match to protein family HMM TIGR02421; hypothetical protein complement(779823..781109) Coxiella burnetii RSA 331 5794761 YP_001596673.1 CDS mutS NC_010117.1 781862 784441 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(781862..784441) Coxiella burnetii RSA 331 5794719 YP_001596674.1 CDS cinA NC_010117.1 784612 785112 D identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence/damage-inducible protein CinA 784612..785112 Coxiella burnetii RSA 331 5793059 YP_001596675.1 CDS recA NC_010117.1 785200 786231 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 785200..786231 Coxiella burnetii RSA 331 5792854 YP_001596676.1 CDS recX NC_010117.1 786228 786662 D identified by match to protein family HMM PF02631; regulatory protein RecX 786228..786662 Coxiella burnetii RSA 331 5793233 YP_001596677.1 CDS alaS NC_010117.1 786655 789252 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 786655..789252 Coxiella burnetii RSA 331 5794681 YP_001596678.1 CDS lysC NC_010117.1 789258 790487 D identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00657; aspartate kinase 789258..790487 Coxiella burnetii RSA 331 5794897 YP_001596679.1 CDS csrA1 NC_010117.1 790627 790839 D affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 790627..790839 Coxiella burnetii RSA 331 5793665 YP_001596680.1 CDS COXBURSA331_A0888 NC_010117.1 793137 793718 D identified by glimmer; putative; hypothetical protein 793137..793718 Coxiella burnetii RSA 331 5793414 YP_001596681.1 CDS COXBURSA331_A0890 NC_010117.1 793791 793949 D identified by glimmer; putative; hypothetical protein 793791..793949 Coxiella burnetii RSA 331 5794600 YP_001596682.1 CDS COXBURSA331_A0893 NC_010117.1 795831 795944 D identified by glimmer; putative; hypothetical protein 795831..795944 Coxiella burnetii RSA 331 5793115 YP_001596683.1 CDS COXBURSA331_A0894 NC_010117.1 796014 796994 R identified by glimmer; putative; hypothetical protein complement(796014..796994) Coxiella burnetii RSA 331 5794009 YP_001596684.1 CDS COXBURSA331_A0895 NC_010117.1 797084 797761 R identified by glimmer; putative; hypothetical protein complement(797084..797761) Coxiella burnetii RSA 331 5793476 YP_001596685.1 CDS COXBURSA331_A0896 NC_010117.1 798469 799113 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 798469..799113 Coxiella burnetii RSA 331 5793369 YP_001596686.1 CDS COXBURSA331_A0897 NC_010117.1 799156 799557 R identified by glimmer; putative; hypothetical protein complement(799156..799557) Coxiella burnetii RSA 331 5792857 YP_001596687.1 CDS COXBURSA331_A0898 NC_010117.1 799551 799706 D identified by glimmer; putative; hypothetical protein 799551..799706 Coxiella burnetii RSA 331 5794529 YP_001596688.1 CDS cyoA NC_010117.1 799714 800610 D identified by match to protein family HMM PF00116; match to protein family HMM PF06481; cytochrome o ubiquinol oxidase subunit II 799714..800610 Coxiella burnetii RSA 331 5792809 YP_001596689.1 CDS cyoB NC_010117.1 800630 802636 D identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843; cytochrome o ubiquinol oxidase subunit I 800630..802636 Coxiella burnetii RSA 331 5793470 YP_001596690.1 CDS cyoC NC_010117.1 802633 803229 D identified by match to protein family HMM PF00510; match to protein family HMM TIGR02842; cytochrome o ubiquinol oxidase subunit III 802633..803229 Coxiella burnetii RSA 331 5792999 YP_001596691.1 CDS COXBURSA331_A0902 NC_010117.1 803303 803437 D identified by glimmer; putative; hypothetical protein 803303..803437 Coxiella burnetii RSA 331 5793633 YP_001596692.1 CDS COXBURSA331_A0906 NC_010117.1 805404 805673 R isochorismatase family protein complement(805404..805673) Coxiella burnetii RSA 331 5793890 YP_001596693.1 CDS COXBURSA331_A0907 NC_010117.1 805670 807076 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(805670..807076) Coxiella burnetii RSA 331 5792924 YP_001596694.1 CDS pgsA NC_010117.1 807198 807758 D identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 807198..807758 Coxiella burnetii RSA 331 5792940 YP_001596695.1 CDS COXBURSA331_A0910 NC_010117.1 807950 808513 R identified by glimmer; putative; hypothetical protein complement(807950..808513) Coxiella burnetii RSA 331 5793614 YP_001596696.1 CDS COXBURSA331_A0911 NC_010117.1 808706 808828 R identified by glimmer; putative; hypothetical protein complement(808706..808828) Coxiella burnetii RSA 331 5793198 YP_001596697.1 CDS COXBURSA331_A0912 NC_010117.1 808807 809241 R identified by match to protein family HMM PF00959; phage lysozyme complement(808807..809241) Coxiella burnetii RSA 331 5792970 YP_001596698.1 CDS COXBURSA331_A0914 NC_010117.1 811348 811989 D hypothetical protein 811348..811989 Coxiella burnetii RSA 331 5793837 YP_001596699.1 CDS COXBURSA331_A0915 NC_010117.1 812005 813396 R identified by match to protein family HMM PF05872; hypothetical protein complement(812005..813396) Coxiella burnetii RSA 331 5793366 YP_001596700.1 CDS COXBURSA331_A0918 NC_010117.1 818444 818743 R identified by match to protein family HMM PF01909; putative nucleotidyltransferase complement(818444..818743) Coxiella burnetii RSA 331 5792954 YP_001596701.1 CDS COXBURSA331_A0920 NC_010117.1 819338 819589 D identified by glimmer; putative; hypothetical protein 819338..819589 Coxiella burnetii RSA 331 5792805 YP_001596702.1 CDS COXBURSA331_A0921 NC_010117.1 819878 820423 R identified by glimmer; putative; hypothetical protein complement(819878..820423) Coxiella burnetii RSA 331 5792789 YP_001596703.1 CDS COXBURSA331_A0922 NC_010117.1 820888 821082 R identified by glimmer; putative; hypothetical protein complement(820888..821082) Coxiella burnetii RSA 331 5793822 YP_001596704.1 CDS COXBURSA331_A0923 NC_010117.1 821489 821617 D identified by glimmer; putative; hypothetical protein 821489..821617 Coxiella burnetii RSA 331 5793143 YP_001596705.1 CDS COXBURSA331_A0927 NC_010117.1 822028 822147 D identified by glimmer; putative; hypothetical protein 822028..822147 Coxiella burnetii RSA 331 5793555 YP_001596706.1 CDS COXBURSA331_A0926 NC_010117.1 822110 822295 R identified by glimmer; putative; hypothetical protein complement(822110..822295) Coxiella burnetii RSA 331 5793928 YP_001596707.1 CDS COXBURSA331_A0928 NC_010117.1 822598 824301 R identified by glimmer; putative; hypothetical protein complement(822598..824301) Coxiella burnetii RSA 331 5793638 YP_001596708.1 CDS COXBURSA331_A0930 NC_010117.1 825977 826291 R identified by match to protein family HMM PF02641; hypothetical protein complement(825977..826291) Coxiella burnetii RSA 331 5793767 YP_001596709.1 CDS bioA NC_010117.1 826662 827990 R identified by match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine-8-amino-7-oxononanoate transaminase complement(826662..827990) Coxiella burnetii RSA 331 5792939 YP_001596710.1 CDS bioB NC_010117.1 828359 829324 D identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 828359..829324 Coxiella burnetii RSA 331 5792907 YP_001596711.1 CDS bioF NC_010117.1 829311 830465 D identified by match to protein family HMM PF00155; match to protein family HMM PF00202; 8-amino-7-oxononanoate synthase 829311..830465 Coxiella burnetii RSA 331 5792973 YP_001596712.1 CDS COXBURSA331_A0935 NC_010117.1 830459 831163 D identified by match to protein family HMM PF00561; putative carboxylesterase BioH 830459..831163 Coxiella burnetii RSA 331 5793321 YP_001596713.1 CDS COXBURSA331_A0936 NC_010117.1 831156 831899 D identified by match to protein family HMM PF08241; match to protein family HMM TIGR02072; putative biotin biosynthesis protein BioC 831156..831899 Coxiella burnetii RSA 331 5794325 YP_001596714.1 CDS birA NC_010117.1 832552 833523 R identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121; bifunctional protein birA complement(832552..833523) Coxiella burnetii RSA 331 5794244 YP_001596715.1 CDS COXBURSA331_A0938 NC_010117.1 833646 834890 D identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212; LolC/E family lipoprotein releasing system, transmembrane protein 833646..834890 Coxiella burnetii RSA 331 5793496 YP_001596716.1 CDS lolD NC_010117.1 834883 835584 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR02211; lipoprotein releasing system, ATP-binding protein 834883..835584 Coxiella burnetii RSA 331 5793847 YP_001596717.1 CDS hflX NC_010117.1 835581 836945 D identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156; GTP-binding proten HflX 835581..836945 Coxiella burnetii RSA 331 5793536 YP_001596718.1 CDS purA NC_010117.1 836966 838273 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 836966..838273 Coxiella burnetii RSA 331 5793949 YP_001596719.1 CDS COXBURSA331_A0942 NC_010117.1 838306 838419 R putative lipoprotein complement(838306..838419) Coxiella burnetii RSA 331 5792779 YP_001596720.1 CDS cyoE NC_010117.1 838431 839348 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(838431..839348) Coxiella burnetii RSA 331 5792831 YP_001596721.1 CDS COXBURSA331_A0944 NC_010117.1 839345 839614 R identified by match to protein family HMM PF02790; putative cytochrome c oxidase, membrane subunit complement(839345..839614) Coxiella burnetii RSA 331 5792906 YP_001596722.1 CDS def NC_010117.1 839947 840459 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(839947..840459) Coxiella burnetii RSA 331 5792910 YP_001596723.1 CDS COXBURSA331_A0947 NC_010117.1 840688 841143 D identified by glimmer; putative; hypothetical protein 840688..841143 Coxiella burnetii RSA 331 5793005 YP_001596724.1 CDS ung NC_010117.1 843858 844535 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(843858..844535) Coxiella burnetii RSA 331 5792778 YP_001596725.1 CDS COXBURSA331_A0952 NC_010117.1 844548 845333 R identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413; rare lipoprotein A family protein complement(844548..845333) Coxiella burnetii RSA 331 5793281 YP_001596726.1 CDS COXBURSA331_A0953 NC_010117.1 845379 846191 D identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase 845379..846191 Coxiella burnetii RSA 331 5793182 YP_001596727.1 CDS COXBURSA331_A0954 NC_010117.1 846248 847006 R identified by glimmer; putative; hypothetical protein complement(846248..847006) Coxiella burnetii RSA 331 5793139 YP_001596728.1 CDS COXBURSA331_A0955 NC_010117.1 847035 847811 R identified by match to protein family HMM PF01210; match to protein family HMM PF02153; prephenate dehydrogenase complement(847035..847811) Coxiella burnetii RSA 331 5792915 YP_001596729.1 CDS pheA NC_010117.1 847795 848670 R identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM TIGR01807; chorismate mutase complement(847795..848670) Coxiella burnetii RSA 331 5792889 YP_001596730.1 CDS COXBURSA331_A0957 NC_010117.1 848660 849742 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(848660..849742) Coxiella burnetii RSA 331 5793172 YP_001596731.1 CDS COXBURSA331_A0958 NC_010117.1 850046 850324 D putative lipoprotein 850046..850324 Coxiella burnetii RSA 331 5793039 YP_001596732.1 CDS COXBURSA331_A0959 NC_010117.1 850413 850715 D putative lipoprotein 850413..850715 Coxiella burnetii RSA 331 5793962 YP_001596733.1 CDS COXBURSA331_A0961 NC_010117.1 850630 850773 D identified by glimmer; putative; hypothetical protein 850630..850773 Coxiella burnetii RSA 331 5794171 YP_001596734.1 CDS COXBURSA331_A0960 NC_010117.1 850746 851195 R identified by glimmer; putative; hypothetical protein complement(850746..851195) Coxiella burnetii RSA 331 5794243 YP_001596735.1 CDS COXBURSA331_A0962 NC_010117.1 851246 853231 R identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; biotin carboxylase complement(851246..853231) Coxiella burnetii RSA 331 5793706 YP_001596736.1 CDS COXBURSA331_A0963 NC_010117.1 853233 854003 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein complement(853233..854003) Coxiella burnetii RSA 331 5793151 YP_001596737.1 CDS COXBURSA331_A0964 NC_010117.1 854023 855630 R identified by match to protein family HMM PF01039; acyl-CoA biotin-dependent carboxyltransferase complement(854023..855630) Coxiella burnetii RSA 331 5793186 YP_001596738.1 CDS COXBURSA331_A0965 NC_010117.1 855712 856896 R identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase complement(855712..856896) Coxiella burnetii RSA 331 5792823 YP_001596739.1 CDS COXBURSA331_A0966 NC_010117.1 856896 858059 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(856896..858059) Coxiella burnetii RSA 331 5794332 YP_001596740.1 CDS COXBURSA331_A0967 NC_010117.1 858150 858842 D hypothetical protein 858150..858842 Coxiella burnetii RSA 331 5794391 YP_001596741.1 CDS pyrD NC_010117.1 858839 859882 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 858839..859882 Coxiella burnetii RSA 331 5794521 YP_001596742.1 CDS COXBURSA331_A0968 NC_010117.1 859879 860934 R identified by glimmer; putative; hypothetical protein complement(859879..860934) Coxiella burnetii RSA 331 5792904 YP_001596743.1 CDS COXBURSA331_A0970 NC_010117.1 860931 861053 R identified by glimmer; putative; hypothetical protein complement(860931..861053) Coxiella burnetii RSA 331 5793248 YP_001596744.1 CDS COXBURSA331_A0971 NC_010117.1 861052 861582 D putative phospholipase D 861052..861582 Coxiella burnetii RSA 331 5794324 YP_001596745.1 CDS COXBURSA331_A0972 NC_010117.1 861708 861809 R identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106; cyd operon protein YbgT complement(861708..861809) Coxiella burnetii RSA 331 5793749 YP_001596746.1 CDS cydB1 NC_010117.1 861823 862956 R identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase, subunit II complement(861823..862956) Coxiella burnetii RSA 331 5793158 YP_001596747.1 CDS cydA1 NC_010117.1 862953 864518 R identified by match to protein family HMM PF01654; cytochrome d ubiquinol oxidase, subunit I complement(862953..864518) Coxiella burnetii RSA 331 5794149 YP_001596748.1 CDS COXBURSA331_A0975 NC_010117.1 864515 864703 R identified by glimmer; putative; hypothetical protein complement(864515..864703) Coxiella burnetii RSA 331 5794151 YP_001596749.1 CDS COXBURSA331_A0976 NC_010117.1 864705 864878 R identified by glimmer; putative; hypothetical protein complement(864705..864878) Coxiella burnetii RSA 331 5793862 YP_001596750.1 CDS COXBURSA331_A0977 NC_010117.1 864988 865869 R identified by glimmer; putative; hypothetical protein complement(864988..865869) Coxiella burnetii RSA 331 5793723 YP_001596751.1 CDS COXBURSA331_A0978 NC_010117.1 865972 866427 D identified by match to protein family HMM PF00578; match to protein family HMM PF08534; anti-oxidant AhpCTSA family protein 865972..866427 Coxiella burnetii RSA 331 5793735 YP_001596752.1 CDS COXBURSA331_A0979 NC_010117.1 866427 867125 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 866427..867125 Coxiella burnetii RSA 331 5794502 YP_001596753.1 CDS COXBURSA331_A0980 NC_010117.1 867136 867306 R identified by glimmer; putative; hypothetical protein complement(867136..867306) Coxiella burnetii RSA 331 5794246 YP_001596754.1 CDS COXBURSA331_A0981 NC_010117.1 867319 867870 R identified by match to protein family HMM PF01381; match to protein family HMM PF07883; DNA-binding protein complement(867319..867870) Coxiella burnetii RSA 331 5794005 YP_001596755.1 CDS COXBURSA331_A0983 NC_010117.1 872801 874045 R hypothetical protein complement(872801..874045) Coxiella burnetii RSA 331 5793685 YP_001596756.1 CDS COXBURSA331_A0985 NC_010117.1 874241 874903 D identified by glimmer; putative; hypothetical protein 874241..874903 Coxiella burnetii RSA 331 5792981 YP_001596757.1 CDS COXBURSA331_A0986 NC_010117.1 875040 875693 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 875040..875693 Coxiella burnetii RSA 331 5792976 YP_001596758.1 CDS COXBURSA331_A0988 NC_010117.1 876507 877820 D identified by match to protein family HMM PF00324; amino acid permease family protein 876507..877820 Coxiella burnetii RSA 331 5792762 YP_001596759.1 CDS COXBURSA331_A0989 NC_010117.1 877909 878592 D identified by glimmer; putative; hypothetical protein 877909..878592 Coxiella burnetii RSA 331 5794411 YP_001596760.1 CDS COXBURSA331_A0992 NC_010117.1 882898 883266 D hypothetical protein 882898..883266 Coxiella burnetii RSA 331 5792905 YP_001596761.1 CDS COXBURSA331_A0994 NC_010117.1 883406 883861 R identified by glimmer; putative; hypothetical protein complement(883406..883861) Coxiella burnetii RSA 331 5793260 YP_001596762.1 CDS COXBURSA331_A0996 NC_010117.1 885409 886389 D identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550; death-on-curing family protein 885409..886389 Coxiella burnetii RSA 331 5793066 YP_001596763.1 CDS COXBURSA331_A0997 NC_010117.1 886514 887359 D identified by glimmer; putative; hypothetical protein 886514..887359 Coxiella burnetii RSA 331 5793092 YP_001596764.1 CDS COXBURSA331_A0998 NC_010117.1 887513 887686 R identified by glimmer; putative; hypothetical protein complement(887513..887686) Coxiella burnetii RSA 331 5794398 YP_001596765.1 CDS COXBURSA331_A1000 NC_010117.1 888189 888563 R identified by match to protein family HMM PF00581; putative sulfurtransferase complement(888189..888563) Coxiella burnetii RSA 331 5793114 YP_001596766.1 CDS COXBURSA331_A1001 NC_010117.1 888705 889088 D identified by glimmer; putative; hypothetical protein 888705..889088 Coxiella burnetii RSA 331 5793212 YP_001596767.1 CDS COXBURSA331_A1002 NC_010117.1 889090 889362 R identified by match to protein family HMM PF04362; hypothetical protein complement(889090..889362) Coxiella burnetii RSA 331 5793870 YP_001596768.1 CDS mutY NC_010117.1 889359 890423 R identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase complement(889359..890423) Coxiella burnetii RSA 331 5793964 YP_001596769.1 CDS COXBURSA331_A1004 NC_010117.1 890429 891937 R identified by match to protein family HMM PF05170; AsmA family protein complement(890429..891937) Coxiella burnetii RSA 331 5793965 YP_001596770.1 CDS COXBURSA331_A1007 NC_010117.1 892837 894234 R hypothetical protein complement(892837..894234) Coxiella burnetii RSA 331 5793995 YP_001596771.1 CDS COXBURSA331_A1008 NC_010117.1 894600 895169 D hypothetical protein 894600..895169 Coxiella burnetii RSA 331 5794272 YP_001596772.1 CDS COXBURSA331_A1009 NC_010117.1 895364 895750 D identified by match to protein family HMM PF00076; glycine-rich RNA binding protein 895364..895750 Coxiella burnetii RSA 331 5794020 YP_001596773.1 CDS COXBURSA331_A1010 NC_010117.1 895756 896670 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 895756..896670 Coxiella burnetii RSA 331 5794285 YP_001596774.1 CDS COXBURSA331_A1012 NC_010117.1 896671 897444 D identified by match to protein family HMM PF01061; ABC transporter permease 896671..897444 Coxiella burnetii RSA 331 5793746 YP_001596775.1 CDS glpK NC_010117.1 897413 898918 R identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311; glycerol kinase complement(897413..898918) Coxiella burnetii RSA 331 5793794 YP_001596776.1 CDS glpD NC_010117.1 899036 900526 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 899036..900526 Coxiella burnetii RSA 331 5793804 YP_001596777.1 CDS mpg NC_010117.1 900513 901190 D responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 900513..901190 Coxiella burnetii RSA 331 5793844 YP_001596778.1 CDS COXBURSA331_A1015 NC_010117.1 901234 902025 D identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase/reductase family oxidoreductase 901234..902025 Coxiella burnetii RSA 331 5793852 YP_001596779.1 CDS pdxH NC_010117.1 902047 902637 D identified by match to protein family HMM PF01243; match to protein family HMM TIGR00558; pyridoxamine 5'-phosphate oxidase 902047..902637 Coxiella burnetii RSA 331 5793849 YP_001596780.1 CDS mmsB NC_010117.1 904175 905068 D identified by match to protein family HMM PF03446; match to protein family HMM TIGR01692; 3-hydroxyisobutyrate dehydrogenase 904175..905068 Coxiella burnetii RSA 331 5793888 YP_001596781.1 CDS COXBURSA331_A1019 NC_010117.1 905169 906170 D identified by match to protein family HMM TIGR02283; putative lytic murein transglycosylase 905169..906170 Coxiella burnetii RSA 331 5793903 YP_001596782.1 CDS mdmC NC_010117.1 906172 906840 D identified by match to protein family HMM PF01596; O-methyltransferase 906172..906840 Coxiella burnetii RSA 331 5793932 YP_001596783.1 CDS COXBURSA331_A1020 NC_010117.1 906835 907869 R identified by match to protein family HMM PF01594; hypothetical protein complement(906835..907869) Coxiella burnetii RSA 331 5793970 YP_001596784.1 CDS COXBURSA331_A1022 NC_010117.1 908086 909399 D identified by match to protein family HMM PF07690; intraphagosomal amino acid transporter (Pht) family protein 908086..909399 Coxiella burnetii RSA 331 5793951 YP_001596785.1 CDS COXBURSA331_A1023 NC_010117.1 909692 910807 R identified by match to protein family HMM PF00487; fatty acid desaturase family protein complement(909692..910807) Coxiella burnetii RSA 331 5793508 YP_001596786.1 CDS COXBURSA331_A1026 NC_010117.1 912640 913155 R identified by match to protein family HMM PF01734; patatin family phospholipase complement(912640..913155) Coxiella burnetii RSA 331 5794468 YP_001596787.1 CDS COXBURSA331_A1028 NC_010117.1 913864 914631 R identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein complement(913864..914631) Coxiella burnetii RSA 331 5794312 YP_001596788.1 CDS COXBURSA331_A1029 NC_010117.1 914834 915334 D hypothetical protein 914834..915334 Coxiella burnetii RSA 331 5794313 YP_001596789.1 CDS COXBURSA331_A1030 NC_010117.1 915336 916451 D identified by glimmer; putative; hypothetical protein 915336..916451 Coxiella burnetii RSA 331 5794314 YP_001596790.1 CDS COXBURSA331_A1031 NC_010117.1 916721 917161 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 916721..917161 Coxiella burnetii RSA 331 5794317 YP_001596791.1 CDS prpD NC_010117.1 917163 918587 D functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 917163..918587 Coxiella burnetii RSA 331 5794318 YP_001596792.1 CDS COXBURSA331_A1034 NC_010117.1 918700 919005 D identified by glimmer; putative; hypothetical protein 918700..919005 Coxiella burnetii RSA 331 5794328 YP_001596793.1 CDS COXBURSA331_A1033 NC_010117.1 918970 919989 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A complement(918970..919989) Coxiella burnetii RSA 331 5794329 YP_001596794.1 CDS COXBURSA331_A1035 NC_010117.1 920118 920267 R identified by glimmer; putative; hypothetical protein complement(920118..920267) Coxiella burnetii RSA 331 5794340 YP_001596795.1 CDS COXBURSA331_A1036 NC_010117.1 920259 920399 D identified by glimmer; putative; hypothetical protein 920259..920399 Coxiella burnetii RSA 331 5794345 YP_001596796.1 CDS COXBURSA331_A1037 NC_010117.1 920402 921376 R identified by glimmer; putative; hypothetical protein complement(920402..921376) Coxiella burnetii RSA 331 5794351 YP_001596797.1 CDS COXBURSA331_A1038 NC_010117.1 921474 922088 R identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein complement(921474..922088) Coxiella burnetii RSA 331 5794352 YP_001596798.1 CDS ispZ NC_010117.1 922141 922686 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 922141..922686 Coxiella burnetii RSA 331 5794356 YP_001596799.1 CDS COXBURSA331_A1040 NC_010117.1 922689 923267 D identified by match to protein family HMM PF01722; match to protein family HMM PF03795; yciL protein 922689..923267 Coxiella burnetii RSA 331 5794360 YP_001596800.1 CDS COXBURSA331_A1041 NC_010117.1 923285 924583 R identified by match to protein family HMM PF07690; major facilitator family transporter complement(923285..924583) Coxiella burnetii RSA 331 5794369 YP_001596801.1 CDS rpmE NC_010117.1 924703 924942 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 924703..924942 Coxiella burnetii RSA 331 5794370 YP_001596802.1 CDS dusA NC_010117.1 924954 925940 R identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742; tRNA-dihydrouridine synthase A complement(924954..925940) Coxiella burnetii RSA 331 5794383 YP_001596803.1 CDS COXBURSA331_A1044 NC_010117.1 926005 928476 R identified by glimmer; putative; hypothetical protein complement(926005..928476) Coxiella burnetii RSA 331 5794397 YP_001596804.1 CDS COXBURSA331_A1045 NC_010117.1 928536 929411 R identified by similarity to GB:ABG65421.1; hypothetical protein complement(928536..929411) Coxiella burnetii RSA 331 5794452 YP_001596805.1 CDS COXBURSA331_A1046 NC_010117.1 929659 929778 R identified by glimmer; putative; hypothetical protein complement(929659..929778) Coxiella burnetii RSA 331 5794506 YP_001596806.1 CDS COXBURSA331_A1047 NC_010117.1 929975 930139 R identified by glimmer; putative; hypothetical protein complement(929975..930139) Coxiella burnetii RSA 331 5794358 YP_001596807.1 CDS COXBURSA331_A1048 NC_010117.1 930468 930803 R hypothetical protein complement(930468..930803) Coxiella burnetii RSA 331 5794316 YP_001596808.1 CDS COXBURSA331_A1049 NC_010117.1 930820 931152 R identified by match to protein family HMM PF00086; thyroglobulin type-1 repeat-containing protein complement(930820..931152) Coxiella burnetii RSA 331 5794367 YP_001596809.1 CDS purF NC_010117.1 931149 932669 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(931149..932669) Coxiella burnetii RSA 331 5794155 YP_001596810.1 CDS dedE NC_010117.1 932678 933232 R identified by match to protein family HMM PF02674; colicin V production protein complement(932678..933232) Coxiella burnetii RSA 331 5794157 YP_001596811.1 CDS COXBURSA331_A1052 NC_010117.1 933300 933911 R identified by match to protein family HMM PF05036; sporulation and cell division repeat-containing protein complement(933300..933911) Coxiella burnetii RSA 331 5792822 YP_001596812.1 CDS folC NC_010117.1 933901 935151 R identified by match to protein family HMM PF08245; match to protein family HMM TIGR01499; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(933901..935151) Coxiella burnetii RSA 331 5794159 YP_001596813.1 CDS accD NC_010117.1 935284 936159 R identified by match to protein family HMM TIGR00515; acetyl-CoA carboxylase, carboxyl transferase subunit beta complement(935284..936159) Coxiella burnetii RSA 331 5794160 YP_001596814.1 CDS truA NC_010117.1 936190 936975 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(936190..936975) Coxiella burnetii RSA 331 5794168 YP_001596815.1 CDS COXBURSA331_A1056 NC_010117.1 936980 937918 R identified by glimmer; putative; hypothetical protein complement(936980..937918) Coxiella burnetii RSA 331 5794169 YP_001596816.1 CDS COXBURSA331_A1057 NC_010117.1 938016 938717 D identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 938016..938717 Coxiella burnetii RSA 331 5794170 YP_001596817.1 CDS COXBURSA331_A1058 NC_010117.1 938699 939355 D putative disulfide bond formation protein D 938699..939355 Coxiella burnetii RSA 331 5794177 YP_001596818.1 CDS bdbC NC_010117.1 939355 939795 D identified by match to protein family HMM PF02600; disulfide bond formation protein C 939355..939795 Coxiella burnetii RSA 331 5794178 YP_001596819.1 CDS coaBC NC_010117.1 940947 942122 R identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(940947..942122) Coxiella burnetii RSA 331 5794309 YP_001596820.1 CDS COXBURSA331_A1062 NC_010117.1 942154 943272 R identified by glimmer; putative; hypothetical protein complement(942154..943272) Coxiella burnetii RSA 331 5794190 YP_001596821.1 CDS typA NC_010117.1 943326 945134 R identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA/BipA complement(943326..945134) Coxiella burnetii RSA 331 5794196 YP_001596822.1 CDS COXBURSA331_A1064 NC_010117.1 945403 945537 D identified by glimmer; putative; hypothetical protein 945403..945537 Coxiella burnetii RSA 331 5794197 YP_001596823.1 CDS COXBURSA331_A1066 NC_010117.1 946940 947605 D identified by glimmer; putative; hypothetical protein 946940..947605 Coxiella burnetii RSA 331 5794209 YP_001596824.1 CDS COXBURSA331_A1068 NC_010117.1 947727 947927 D identified by glimmer; putative; hypothetical protein 947727..947927 Coxiella burnetii RSA 331 5794211 YP_001596825.1 CDS COXBURSA331_A1067 NC_010117.1 947848 949233 R identified by glimmer; putative; hypothetical protein complement(947848..949233) Coxiella burnetii RSA 331 5794214 YP_001596826.1 CDS COXBURSA331_A1069 NC_010117.1 949328 949807 R identified by glimmer; putative; hypothetical protein complement(949328..949807) Coxiella burnetii RSA 331 5794219 YP_001596827.1 CDS COXBURSA331_A1070 NC_010117.1 949902 950384 R identified by glimmer; putative; hypothetical protein complement(949902..950384) Coxiella burnetii RSA 331 5794222 YP_001596828.1 CDS COXBURSA331_A1071 NC_010117.1 950513 950629 R identified by glimmer; putative; hypothetical protein complement(950513..950629) Coxiella burnetii RSA 331 5794227 YP_001596829.1 CDS COXBURSA331_A1072 NC_010117.1 950718 950831 D identified by glimmer; putative; hypothetical protein 950718..950831 Coxiella burnetii RSA 331 5794239 YP_001596830.1 CDS COXBURSA331_A1073 NC_010117.1 950815 951921 D identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; ThiF/MoeZ/MoeB domain/rhodanese-like domain-containing protein 950815..951921 Coxiella burnetii RSA 331 5794231 YP_001596831.1 CDS COXBURSA331_A1075 NC_010117.1 952064 952189 D identified by glimmer; putative; hypothetical protein 952064..952189 Coxiella burnetii RSA 331 5794240 YP_001596832.1 CDS asd NC_010117.1 952186 953208 R identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase complement(952186..953208) Coxiella burnetii RSA 331 5794241 YP_001596833.1 CDS aroC NC_010117.1 953221 954279 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(953221..954279) Coxiella burnetii RSA 331 5794252 YP_001596834.1 CDS COXBURSA331_A1077 NC_010117.1 954278 954391 D identified by glimmer; putative; hypothetical protein 954278..954391 Coxiella burnetii RSA 331 5794253 YP_001596835.1 CDS COXBURSA331_A1078 NC_010117.1 954459 955001 D identified by match to protein family HMM PF01713; Smr domain-containing protein 954459..955001 Coxiella burnetii RSA 331 5794259 YP_001596836.1 CDS udk NC_010117.1 954991 955638 D functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 954991..955638 Coxiella burnetii RSA 331 5794264 YP_001596837.1 CDS COXBURSA331_A1080 NC_010117.1 956164 956412 R identified by match to protein family HMM PF03937; hypothetical protein complement(956164..956412) Coxiella burnetii RSA 331 5794273 YP_001596838.1 CDS alr NC_010117.1 956409 957503 R identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase complement(956409..957503) Coxiella burnetii RSA 331 5794276 YP_001596839.1 CDS dnaB NC_010117.1 957500 959332 R identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; replicative DNA helicase complement(957500..959332) Coxiella burnetii RSA 331 5794278 YP_001596840.1 CDS rplI NC_010117.1 959581 960039 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(959581..960039) Coxiella burnetii RSA 331 5794279 YP_001596841.1 CDS COXBURSA331_A1085 NC_010117.1 960057 960956 R hypothetical protein complement(960057..960956) Coxiella burnetii RSA 331 5794281 YP_001596842.1 CDS rpsR NC_010117.1 960960 961181 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(960960..961181) Coxiella burnetii RSA 331 5794315 YP_001596843.1 CDS rpsF NC_010117.1 961194 961577 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(961194..961577) Coxiella burnetii RSA 331 5794287 YP_001596844.1 CDS COXBURSA331_A1088 NC_010117.1 961687 963294 R ankyrin repeat-containing protein complement(961687..963294) Coxiella burnetii RSA 331 5794288 YP_001596845.1 CDS COXBURSA331_A1089 NC_010117.1 963616 963996 R identified by glimmer; putative; hypothetical protein complement(963616..963996) Coxiella burnetii RSA 331 5792791 YP_001596846.1 CDS COXBURSA331_A1090 NC_010117.1 963995 964135 D identified by glimmer; putative; hypothetical protein 963995..964135 Coxiella burnetii RSA 331 5792693 YP_001596847.1 CDS COXBURSA331_A1091 NC_010117.1 964201 964572 D identified by match to protein family HMM PF04430; hypothetical protein 964201..964572 Coxiella burnetii RSA 331 5792896 YP_001596848.1 CDS nadE NC_010117.1 964579 966207 D identified by match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552; NAD+ synthetase 964579..966207 Coxiella burnetii RSA 331 5793699 YP_001596849.1 CDS lpxK NC_010117.1 966204 967181 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(966204..967181) Coxiella burnetii RSA 331 5793778 YP_001596850.1 CDS msbA NC_010117.1 967181 968947 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02203; lipid A export permease/ATP-binding protein MsbA complement(967181..968947) Coxiella burnetii RSA 331 5793647 YP_001596851.1 CDS mgsA NC_010117.1 971485 971916 D catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 971485..971916 Coxiella burnetii RSA 331 5793413 YP_001596852.1 CDS pnp NC_010117.1 972008 974098 R identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase complement(972008..974098) Coxiella burnetii RSA 331 5792804 YP_001596853.1 CDS rpsO NC_010117.1 974109 974378 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(974109..974378) Coxiella burnetii RSA 331 5793125 YP_001596854.1 CDS COXBURSA331_A1100 NC_010117.1 974634 975497 R hypothetical protein complement(974634..975497) Coxiella burnetii RSA 331 5793422 YP_001596855.1 CDS galU NC_010117.1 975591 976478 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase complement(975591..976478) Coxiella burnetii RSA 331 5793012 YP_001596856.1 CDS pgi NC_010117.1 976475 978118 R identified by match to protein family HMM PF00342; glucose-6-phosphate isomerase complement(976475..978118) Coxiella burnetii RSA 331 5793009 YP_001596857.1 CDS COXBURSA331_A1103 NC_010117.1 978128 978892 R identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase/reductase family oxidoreductase complement(978128..978892) Coxiella burnetii RSA 331 5793246 YP_001596858.1 CDS ugd NC_010117.1 978906 980255 R identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose 6-dehydrogenase complement(978906..980255) Coxiella burnetii RSA 331 5793345 YP_001596859.1 CDS COXBURSA331_A1105 NC_010117.1 980313 981602 D identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose/GDP-mannose dehydrogenase family protein 980313..981602 Coxiella burnetii RSA 331 5793418 YP_001596860.1 CDS COXBURSA331_A1106 NC_010117.1 981605 982609 D identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; capsular polysaccharide biosynthesis protein 981605..982609 Coxiella burnetii RSA 331 5794040 YP_001596861.1 CDS COXBURSA331_A1107 NC_010117.1 982614 983771 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(982614..983771) Coxiella burnetii RSA 331 5793173 YP_001596862.1 CDS COXBURSA331_A1108 NC_010117.1 983782 984879 R identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase complement(983782..984879) Coxiella burnetii RSA 331 5794066 YP_001596863.1 CDS COXBURSA331_A1109 NC_010117.1 985110 986252 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(985110..986252) Coxiella burnetii RSA 331 5793766 YP_001596864.1 CDS asnB1 NC_010117.1 986249 988162 R identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthase complement(986249..988162) Coxiella burnetii RSA 331 5793391 YP_001596865.1 CDS COXBURSA331_A1111 NC_010117.1 988162 989445 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(988162..989445) Coxiella burnetii RSA 331 5793208 YP_001596866.1 CDS COXBURSA331_A1112 NC_010117.1 989590 990690 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(989590..990690) Coxiella burnetii RSA 331 5792961 YP_001596867.1 CDS COXBURSA331_A1113 NC_010117.1 990976 992460 R hypothetical protein complement(990976..992460) Coxiella burnetii RSA 331 5793661 YP_001596868.1 CDS COXBURSA331_A1114 NC_010117.1 992475 993443 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(992475..993443) Coxiella burnetii RSA 331 5792817 YP_001596869.1 CDS COXBURSA331_A1115 NC_010117.1 993555 993824 R identified by glimmer; putative; hypothetical protein complement(993555..993824) Coxiella burnetii RSA 331 5794073 YP_001596870.1 CDS COXBURSA331_A1116 NC_010117.1 993833 994714 R identified by match to protein family HMM PF08241; match to protein family HMM PF08242; putative methyltransferase complement(993833..994714) Coxiella burnetii RSA 331 5793335 YP_001596871.1 CDS COXBURSA331_A1117 NC_010117.1 994832 996637 R identified by match to protein family HMM PF00005; ABC transporter permease complement(994832..996637) Coxiella burnetii RSA 331 5793683 YP_001596872.1 CDS COXBURSA331_A1118 NC_010117.1 996648 997199 R putative acetyltransferase complement(996648..997199) Coxiella burnetii RSA 331 5792794 YP_001596873.1 CDS asnB2 NC_010117.1 997200 999098 R identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthetase B complement(997200..999098) Coxiella burnetii RSA 331 5792815 YP_001596874.1 CDS COXBURSA331_A1120 NC_010117.1 999101 1000249 R identified by match to protein family HMM PF01041; polysaccharide biosynthesis protein complement(999101..1000249) Coxiella burnetii RSA 331 5794082 YP_001596875.1 CDS COXBURSA331_A1121 NC_010117.1 1000252 1001244 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein complement(1000252..1001244) Coxiella burnetii RSA 331 5792877 YP_001596876.1 CDS COXBURSA331_A1122 NC_010117.1 1001262 1002815 R identified by match to protein family HMM PF00132; match to protein family HMM PF01408; match to protein family HMM PF02894; hexapeptide repeat-containing transferase complement(1001262..1002815) Coxiella burnetii RSA 331 5793203 YP_001596877.1 CDS COXBURSA331_A1123 NC_010117.1 1002892 1003467 R hypothetical protein complement(1002892..1003467) Coxiella burnetii RSA 331 5792870 YP_001596878.1 CDS rfaH NC_010117.1 1003523 1004026 R identified by match to protein family HMM PF02357; match to protein family HMM TIGR01955; transcriptional activator RfaH complement(1003523..1004026) Coxiella burnetii RSA 331 5793394 YP_001596879.1 CDS COXBURSA331_A1125 NC_010117.1 1004013 1005122 R identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212; DegT/DnrJ/EryC1/StrS aminotransferase family protein complement(1004013..1005122) Coxiella burnetii RSA 331 5793242 YP_001596880.1 CDS purB NC_010117.1 1005226 1006611 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1005226..1006611 Coxiella burnetii RSA 331 5792782 YP_001596881.1 CDS sfcA NC_010117.1 1006639 1008336 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1006639..1008336 Coxiella burnetii RSA 331 5793019 YP_001596882.1 CDS COXBURSA331_A1129 NC_010117.1 1008781 1009917 D identified by match to protein family HMM PF02661; Fic family protein 1008781..1009917 Coxiella burnetii RSA 331 5793218 YP_001596883.1 CDS COXBURSA331_A1130 NC_010117.1 1009982 1010173 R identified by glimmer; putative; hypothetical protein complement(1009982..1010173) Coxiella burnetii RSA 331 5793348 YP_001596884.1 CDS COXBURSA331_A1132 NC_010117.1 1011386 1012060 R identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase family protein complement(1011386..1012060) Coxiella burnetii RSA 331 5793206 YP_001596885.1 CDS COXBURSA331_A1133 NC_010117.1 1012117 1012698 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1012117..1012698) Coxiella burnetii RSA 331 5793705 YP_001596886.1 CDS COXBURSA331_A1134 NC_010117.1 1013087 1013515 D acetyltransferase 1013087..1013515 Coxiella burnetii RSA 331 5792795 YP_001596887.1 CDS COXBURSA331_A1137 NC_010117.1 1015568 1015702 D identified by glimmer; putative; hypothetical protein 1015568..1015702 Coxiella burnetii RSA 331 5793223 YP_001596888.1 CDS COXBURSA331_A1138 NC_010117.1 1015792 1016250 R identified by glimmer; putative; hypothetical protein complement(1015792..1016250) Coxiella burnetii RSA 331 5792928 YP_001596889.1 CDS COXBURSA331_A1139 NC_010117.1 1016538 1017896 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(1016538..1017896) Coxiella burnetii RSA 331 5793674 YP_001596890.1 CDS prfC NC_010117.1 1017911 1019488 R stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 complement(1017911..1019488) Coxiella burnetii RSA 331 5792813 YP_001596891.1 CDS COXBURSA331_A1141 NC_010117.1 1019489 1020556 R identified by match to protein family HMM PF03739; putative permease complement(1019489..1020556) Coxiella burnetii RSA 331 5792848 YP_001596892.1 CDS COXBURSA331_A1142 NC_010117.1 1020544 1021656 R identified by match to protein family HMM PF03739; putative permease complement(1020544..1021656) Coxiella burnetii RSA 331 5793407 YP_001596893.1 CDS valS NC_010117.1 1021799 1024561 D identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00422; valyl-tRNA synthetase 1021799..1024561 Coxiella burnetii RSA 331 5793220 YP_001596894.1 CDS COXBURSA331_A1144 NC_010117.1 1024593 1025732 R identified by match to protein family HMM PF00144; putative beta-lactamase complement(1024593..1025732) Coxiella burnetii RSA 331 5792792 YP_001596895.1 CDS COXBURSA331_A1145 NC_010117.1 1026468 1029506 R identified by match to protein family HMM PF00873; RND efflux transporter complement(1026468..1029506) Coxiella burnetii RSA 331 5793267 YP_001596896.1 CDS COXBURSA331_A1146 NC_010117.1 1029514 1030569 R identified by match to protein family HMM PF00364; match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(1029514..1030569) Coxiella burnetii RSA 331 5792811 YP_001596897.1 CDS COXBURSA331_A1147 NC_010117.1 1030762 1031553 D identified by glimmer; putative; hypothetical protein 1030762..1031553 Coxiella burnetii RSA 331 5793217 YP_001596898.1 CDS rimI NC_010117.1 1031574 1032011 R identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase complement(1031574..1032011) Coxiella burnetii RSA 331 5793802 YP_001596899.1 CDS COXBURSA331_A1149 NC_010117.1 1032008 1032415 R identified by glimmer; putative; hypothetical protein complement(1032008..1032415) Coxiella burnetii RSA 331 5793001 YP_001596900.1 CDS emrA NC_010117.1 1032567 1033562 D identified by match to protein family HMM PF00529; multidrug resistance protein A 1032567..1033562 Coxiella burnetii RSA 331 5792894 YP_001596901.1 CDS COXBURSA331_A1151 NC_010117.1 1033563 1035143 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; DHA2 family drug:H+ antiporter-1 1033563..1035143 Coxiella burnetii RSA 331 5793515 YP_001596902.1 CDS COXBURSA331_A1152 NC_010117.1 1035160 1035501 D identified by match to protein family HMM PF01230; histidine triad domain-containing protein 1035160..1035501 Coxiella burnetii RSA 331 5793108 YP_001596903.1 CDS folE NC_010117.1 1035513 1036067 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1035513..1036067 Coxiella burnetii RSA 331 5793676 YP_001596904.1 CDS COXBURSA331_A1155 NC_010117.1 1036503 1037897 D hypothetical protein 1036503..1037897 Coxiella burnetii RSA 331 5793935 YP_001596905.1 CDS COXBURSA331_A1156 NC_010117.1 1037944 1038558 D hypothetical protein 1037944..1038558 Coxiella burnetii RSA 331 5793096 YP_001596906.1 CDS COXBURSA331_A1157 NC_010117.1 1038662 1040041 R identified by match to protein family HMM PF07690; major facilitator family transporter complement(1038662..1040041) Coxiella burnetii RSA 331 5793797 YP_001596907.1 CDS COXBURSA331_A1158 NC_010117.1 1040139 1042649 R hypothetical protein complement(1040139..1042649) Coxiella burnetii RSA 331 5793368 YP_001596908.1 CDS COXBURSA331_A1159 NC_010117.1 1042734 1043327 R identified by glimmer; putative; hypothetical protein complement(1042734..1043327) Coxiella burnetii RSA 331 5794015 YP_001596909.1 CDS COXBURSA331_A1160 NC_010117.1 1043577 1046003 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229; putative sensor protein gacS complement(1043577..1046003) Coxiella burnetii RSA 331 5793134 YP_001596910.1 CDS COXBURSA331_A1161 NC_010117.1 1046164 1051002 R identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM PF08659; polyketide synthase complement(1046164..1051002) Coxiella burnetii RSA 331 5793667 YP_001596911.1 CDS COXBURSA331_A1162 NC_010117.1 1050992 1052536 R identified by match to protein family HMM PF00501; match to protein family HMM TIGR01733; AMP-binding domain-containing protein complement(1050992..1052536) Coxiella burnetii RSA 331 5793363 YP_001596912.1 CDS COXBURSA331_A1163 NC_010117.1 1052571 1053704 R identified by match to protein family HMM PF02515; CAIB/BAIF family protein complement(1052571..1053704) Coxiella burnetii RSA 331 5792796 YP_001596913.1 CDS COXBURSA331_A1166 NC_010117.1 1056652 1056813 R identified by glimmer; putative; hypothetical protein complement(1056652..1056813) Coxiella burnetii RSA 331 5792860 YP_001596914.1 CDS COXBURSA331_A1167 NC_010117.1 1056832 1057512 R ankyrin repeat-containing protein complement(1056832..1057512) Coxiella burnetii RSA 331 5793775 YP_001596915.1 CDS COXBURSA331_A1168 NC_010117.1 1057911 1058561 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator complement(1057911..1058561) Coxiella burnetii RSA 331 5793776 YP_001596916.1 CDS COXBURSA331_A1169 NC_010117.1 1058767 1059165 D identified by glimmer; putative; hypothetical protein 1058767..1059165 Coxiella burnetii RSA 331 5793653 YP_001596917.1 CDS COXBURSA331_A1171 NC_010117.1 1059736 1060650 R ABC transporter permease complement(1059736..1060650) Coxiella burnetii RSA 331 5792979 YP_001596918.1 CDS COXBURSA331_A1172 NC_010117.1 1060647 1061498 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1060647..1061498) Coxiella burnetii RSA 331 5792829 YP_001596919.1 CDS COXBURSA331_A1173 NC_010117.1 1061495 1061836 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(1061495..1061836) Coxiella burnetii RSA 331 5794007 YP_001596920.1 CDS COXBURSA331_A1174 NC_010117.1 1061843 1062091 R identified by match to protein family HMM PF04024; PspC domain-containing protein complement(1061843..1062091) Coxiella burnetii RSA 331 5793254 YP_001596921.1 CDS COXBURSA331_A1175 NC_010117.1 1062220 1062690 R identified by match to protein family HMM PF00903; glyoxalase family protein complement(1062220..1062690) Coxiella burnetii RSA 331 5793543 YP_001596922.1 CDS prpC NC_010117.1 1062693 1063811 R identified by match to protein family HMM PF00285; match to protein family HMM TIGR01800; 2-methylcitrate synthase complement(1062693..1063811) Coxiella burnetii RSA 331 5792941 YP_001596923.1 CDS prpB NC_010117.1 1063804 1064676 R catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase complement(1063804..1064676) Coxiella burnetii RSA 331 5793146 YP_001596924.1 CDS COXBURSA331_A1179 NC_010117.1 1066276 1066962 R identified by match to protein family HMM PF00117; glutamine amidotransferase complement(1066276..1066962) Coxiella burnetii RSA 331 5794167 YP_001596925.1 CDS COXBURSA331_A1183 NC_010117.1 1068874 1069032 D identified by glimmer; putative; hypothetical protein 1068874..1069032 Coxiella burnetii RSA 331 5794148 YP_001596926.1 CDS COXBURSA331_A1185 NC_010117.1 1069437 1071389 D AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 1069437..1071389 Coxiella burnetii RSA 331 5792977 YP_001596927.1 CDS COXBURSA331_A1188 NC_010117.1 1075620 1076210 R identified by glimmer; putative; hypothetical protein complement(1075620..1076210) Coxiella burnetii RSA 331 5794184 YP_001596928.1 CDS COXBURSA331_A1189 NC_010117.1 1076231 1076917 R identified by glimmer; putative; hypothetical protein complement(1076231..1076917) Coxiella burnetii RSA 331 5794187 YP_001596929.1 CDS COXBURSA331_A1190 NC_010117.1 1076997 1077155 R identified by glimmer; putative; hypothetical protein complement(1076997..1077155) Coxiella burnetii RSA 331 5794174 YP_001596930.1 CDS COXBURSA331_A1191 NC_010117.1 1077176 1077550 D identified by match to protein family HMM PF00072; response regulator receiver domain-containing protein 1077176..1077550 Coxiella burnetii RSA 331 5794185 YP_001596931.1 CDS comL NC_010117.1 1078785 1079552 R identified by match to protein family HMM TIGR03302; competence lipoprotein ComL complement(1078785..1079552) Coxiella burnetii RSA 331 5794201 YP_001596932.1 CDS rluD NC_010117.1 1079675 1080646 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 1079675..1080646 Coxiella burnetii RSA 331 5794203 YP_001596933.1 CDS COXBURSA331_A1195 NC_010117.1 1080618 1081325 D identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 1080618..1081325 Coxiella burnetii RSA 331 5794188 YP_001596934.1 CDS COXBURSA331_A1196 NC_010117.1 1081486 1082841 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; protease Do 1081486..1082841 Coxiella burnetii RSA 331 5794189 YP_001596935.1 CDS COXBURSA331_A1198 NC_010117.1 1083935 1087003 D identified by match to protein family HMM PF00873; RND efflux transporter 1083935..1087003 Coxiella burnetii RSA 331 5794223 YP_001596936.1 CDS COXBURSA331_A1199 NC_010117.1 1087101 1087283 R identified by glimmer; putative; hypothetical protein complement(1087101..1087283) Coxiella burnetii RSA 331 5794218 YP_001596937.1 CDS COXBURSA331_A1200 NC_010117.1 1087314 1088243 R identified by glimmer; putative; hypothetical protein complement(1087314..1088243) Coxiella burnetii RSA 331 5793850 YP_001596938.1 CDS murA NC_010117.1 1088246 1089550 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(1088246..1089550) Coxiella burnetii RSA 331 5793901 YP_001596939.1 CDS kdsD NC_010117.1 1089701 1090675 D identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; arabinose-5-phosphate isomerase 1089701..1090675 Coxiella burnetii RSA 331 5794386 YP_001596940.1 CDS COXBURSA331_A1203 NC_010117.1 1090677 1091174 D identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 1090677..1091174 Coxiella burnetii RSA 331 5794027 YP_001596941.1 CDS COXBURSA331_A1204 NC_010117.1 1091190 1091777 D identified by match to protein family HMM PF06835; hypothetical protein 1091190..1091777 Coxiella burnetii RSA 331 5792986 YP_001596942.1 CDS yhbN NC_010117.1 1091740 1092255 D identified by match to protein family HMM PF03968; match to protein family HMM TIGR03002; cell envelope biogenesis protein YhbN 1091740..1092255 Coxiella burnetii RSA 331 5793028 YP_001596943.1 CDS COXBURSA331_A1206 NC_010117.1 1092258 1093007 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1092258..1093007 Coxiella burnetii RSA 331 5792917 YP_001596944.1 CDS yfiA NC_010117.1 1093106 1093396 D identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 1093106..1093396 Coxiella burnetii RSA 331 5793829 YP_001596945.1 CDS hprK NC_010117.1 1093396 1093974 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 1093396..1093974 Coxiella burnetii RSA 331 5792855 YP_001596946.1 CDS ptsH NC_010117.1 1093955 1094224 D identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr 1093955..1094224 Coxiella burnetii RSA 331 5792873 YP_001596947.1 CDS COXBURSA331_A1210 NC_010117.1 1094450 1095772 R identified by match to protein family HMM PF01523; TldD/PmbA family protein complement(1094450..1095772) Coxiella burnetii RSA 331 5794466 YP_001596948.1 CDS lon NC_010117.1 1095781 1098234 R identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La complement(1095781..1098234) Coxiella burnetii RSA 331 5793902 YP_001596949.1 CDS clpX NC_010117.1 1098248 1099516 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(1098248..1099516) Coxiella burnetii RSA 331 5793083 YP_001596950.1 CDS clpP NC_010117.1 1099571 1100158 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(1099571..1100158) Coxiella burnetii RSA 331 5793036 YP_001596951.1 CDS tig NC_010117.1 1100168 1101481 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(1100168..1101481) Coxiella burnetii RSA 331 5793174 YP_001596952.1 CDS COXBURSA331_A1216 NC_010117.1 1101785 1102438 D identified by glimmer; putative; hypothetical protein 1101785..1102438 Coxiella burnetii RSA 331 5793620 YP_001596953.1 CDS COXBURSA331_A1217 NC_010117.1 1102459 1103307 R identified by match to protein family HMM PF01048; phosphorylase family protein complement(1102459..1103307) Coxiella burnetii RSA 331 5794263 YP_001596954.1 CDS COXBURSA331_A1218 NC_010117.1 1103289 1103513 D identified by glimmer; putative; hypothetical protein 1103289..1103513 Coxiella burnetii RSA 331 5794260 YP_001596955.1 CDS COXBURSA331_A2233 NC_010117.1 1103573 1104082 D identified by glimmer; putative; hypothetical protein 1103573..1104082 Coxiella burnetii RSA 331 5794257 YP_001596956.1 CDS COXBURSA331_A1219 NC_010117.1 1104100 1104498 D identified by glimmer; putative; hypothetical protein 1104100..1104498 Coxiella burnetii RSA 331 5794255 YP_001596957.1 CDS COXBURSA331_A1221 NC_010117.1 1104654 1105070 D identified by glimmer; putative; hypothetical protein 1104654..1105070 Coxiella burnetii RSA 331 5794251 YP_001596958.1 CDS COXBURSA331_A1220 NC_010117.1 1105067 1105666 R hypothetical protein complement(1105067..1105666) Coxiella burnetii RSA 331 5794238 YP_001596959.1 CDS COXBURSA331_A1222 NC_010117.1 1105669 1106595 R identified by match to protein family HMM PF02470; ABC transporter substrate-binding protein complement(1105669..1106595) Coxiella burnetii RSA 331 5794236 YP_001596960.1 CDS COXBURSA331_A1223 NC_010117.1 1106579 1107385 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1106579..1107385) Coxiella burnetii RSA 331 5794235 YP_001596961.1 CDS COXBURSA331_A1224 NC_010117.1 1107385 1108518 R identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; ABC transporter permease complement(1107385..1108518) Coxiella burnetii RSA 331 5794233 YP_001596962.1 CDS COXBURSA331_A1225 NC_010117.1 1108652 1108774 D identified by glimmer; putative; hypothetical protein 1108652..1108774 Coxiella burnetii RSA 331 5794232 YP_001596963.1 CDS COXBURSA331_A1228 NC_010117.1 1111062 1111508 R identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein complement(1111062..1111508) Coxiella burnetii RSA 331 5794135 YP_001596964.1 CDS COXBURSA331_A1229 NC_010117.1 1111522 1112988 R identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; putative carbohydrate kinase complement(1111522..1112988) Coxiella burnetii RSA 331 5794110 YP_001596965.1 CDS COXBURSA331_A1231 NC_010117.1 1113245 1114264 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1113245..1114264 Coxiella burnetii RSA 331 5794107 YP_001596966.1 CDS COXBURSA331_A1230 NC_010117.1 1114261 1114533 R identified by glimmer; putative; hypothetical protein complement(1114261..1114533) Coxiella burnetii RSA 331 5794104 YP_001596967.1 CDS rnr NC_010117.1 1114672 1116882 R identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R complement(1114672..1116882) Coxiella burnetii RSA 331 5794103 YP_001596968.1 CDS COXBURSA331_A1233 NC_010117.1 1116963 1117193 D putative lipoprotein 1116963..1117193 Coxiella burnetii RSA 331 5793985 YP_001596969.1 CDS COXBURSA331_A1234 NC_010117.1 1117217 1120276 R identified by match to protein family HMM PF00873; RND efflux transporter complement(1117217..1120276) Coxiella burnetii RSA 331 5793236 YP_001596970.1 CDS COXBURSA331_A1237 NC_010117.1 1121666 1122166 D identified by glimmer; putative; hypothetical protein 1121666..1122166 Coxiella burnetii RSA 331 5793659 YP_001596971.1 CDS fumC NC_010117.1 1122170 1123549 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1122170..1123549 Coxiella burnetii RSA 331 5794130 YP_001596972.1 CDS COXBURSA331_A1241 NC_010117.1 1124671 1125495 R identified by glimmer; putative; hypothetical protein complement(1124671..1125495) Coxiella burnetii RSA 331 5794186 YP_001596973.1 CDS lepB1 NC_010117.1 1125631 1126410 R identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I complement(1125631..1126410) Coxiella burnetii RSA 331 5794115 YP_001596974.1 CDS COXBURSA331_A1243 NC_010117.1 1126420 1126833 R identified by glimmer; putative; hypothetical protein complement(1126420..1126833) Coxiella burnetii RSA 331 5794116 YP_001596975.1 CDS COXBURSA331_A1244 NC_010117.1 1126845 1127009 R identified by glimmer; putative; hypothetical protein complement(1126845..1127009) Coxiella burnetii RSA 331 5793986 YP_001596976.1 CDS COXBURSA331_A1245 NC_010117.1 1127384 1127566 D identified by glimmer; putative; hypothetical protein 1127384..1127566 Coxiella burnetii RSA 331 5793655 YP_001596977.1 CDS COXBURSA331_A1246 NC_010117.1 1127666 1127794 R identified by glimmer; putative; hypothetical protein complement(1127666..1127794) Coxiella burnetii RSA 331 5793879 YP_001596978.1 CDS COXBURSA331_A1249 NC_010117.1 1130854 1131165 D identified by glimmer; putative; hypothetical protein 1130854..1131165 Coxiella burnetii RSA 331 5794365 YP_001596979.1 CDS COXBURSA331_A1250 NC_010117.1 1131534 1132070 D identified by glimmer; putative; hypothetical protein 1131534..1132070 Coxiella burnetii RSA 331 5792756 YP_001596980.1 CDS COXBURSA331_A1251 NC_010117.1 1132195 1132944 R identified by glimmer; putative; hypothetical protein complement(1132195..1132944) Coxiella burnetii RSA 331 5793821 YP_001596981.1 CDS COXBURSA331_A1252 NC_010117.1 1133119 1133673 R identified by glimmer; putative; hypothetical protein complement(1133119..1133673) Coxiella burnetii RSA 331 5793975 YP_001596982.1 CDS COXBURSA331_A1253 NC_010117.1 1133730 1135295 R identified by glimmer; putative; hypothetical protein complement(1133730..1135295) Coxiella burnetii RSA 331 5793689 YP_001596983.1 CDS COXBURSA331_A1255 NC_010117.1 1136602 1136889 R identified by match to protein family HMM PF01541; GIY-YIG catalytic domain-containing protein complement(1136602..1136889) Coxiella burnetii RSA 331 5793495 YP_001596984.1 CDS COXBURSA331_A1257 NC_010117.1 1137128 1137400 D identified by glimmer; putative; hypothetical protein 1137128..1137400 Coxiella burnetii RSA 331 5793042 YP_001596985.1 CDS COXBURSA331_A1256 NC_010117.1 1137397 1138416 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A complement(1137397..1138416) Coxiella burnetii RSA 331 5793601 YP_001596986.1 CDS COXBURSA331_A1260 NC_010117.1 1139911 1140156 D identified by glimmer; putative; hypothetical protein 1139911..1140156 Coxiella burnetii RSA 331 5793377 YP_001596987.1 CDS ald NC_010117.1 1140157 1141266 R identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase complement(1140157..1141266) Coxiella burnetii RSA 331 5793095 YP_001596988.1 CDS etfA NC_010117.1 1141295 1142239 R identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha complement(1141295..1142239) Coxiella burnetii RSA 331 5794385 YP_001596989.1 CDS etfB NC_010117.1 1142236 1142988 R identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta complement(1142236..1142988) Coxiella burnetii RSA 331 5794368 YP_001596990.1 CDS COXBURSA331_A1264 NC_010117.1 1142985 1143698 R identified by match to protein family HMM PF01738; dienelactone hydrolase family protein complement(1142985..1143698) Coxiella burnetii RSA 331 5793851 YP_001596991.1 CDS COXBURSA331_A1266 NC_010117.1 1143829 1145454 D identified by match to protein family HMM PF01266; match to protein family HMM PF05187; electron-transferring-flavoprotein dehydrogenase 1143829..1145454 Coxiella burnetii RSA 331 5794126 YP_001596992.1 CDS COXBURSA331_A1267 NC_010117.1 1145429 1145548 D identified by glimmer; putative; hypothetical protein 1145429..1145548 Coxiella burnetii RSA 331 5793987 YP_001596993.1 CDS COXBURSA331_A1265 NC_010117.1 1145449 1145631 R identified by glimmer; putative; hypothetical protein complement(1145449..1145631) Coxiella burnetii RSA 331 5794124 YP_001596994.1 CDS enhA2 NC_010117.1 1145662 1146420 D identified by match to protein family HMM PF03734; enhanced entry protein EnhA 1145662..1146420 Coxiella burnetii RSA 331 5794120 YP_001596995.1 CDS COXBURSA331_A1270 NC_010117.1 1146559 1146831 D identified by glimmer; putative; hypothetical protein 1146559..1146831 Coxiella burnetii RSA 331 5794117 YP_001596996.1 CDS cbpA NC_010117.1 1148004 1148945 D identified by match to protein family HMM PF00226; match to protein family HMM PF01556; curved DNA-binding protein 1148004..1148945 Coxiella burnetii RSA 331 5793197 YP_001596997.1 CDS cbpM NC_010117.1 1148948 1149268 D chaperone-modulator protein CbpM 1148948..1149268 Coxiella burnetii RSA 331 5794100 YP_001596998.1 CDS COXBURSA331_A1273 NC_010117.1 1149272 1150141 D glycosyl hydrolase family protein 1149272..1150141 Coxiella burnetii RSA 331 5794099 YP_001596999.1 CDS COXBURSA331_A1274 NC_010117.1 1150138 1150689 D identified by glimmer; putative; hypothetical protein 1150138..1150689 Coxiella burnetii RSA 331 5793153 YP_001597000.1 CDS COXBURSA331_A1276 NC_010117.1 1151379 1151738 R identified by match to protein family HMM PF01592; NifU-like domain-containing protein complement(1151379..1151738) Coxiella burnetii RSA 331 5793881 YP_001597001.1 CDS iscS NC_010117.1 1151745 1152935 R identified by match to protein family HMM PF00266; match to protein family HMM PF01212; cysteine desulfurase complement(1151745..1152935) Coxiella burnetii RSA 331 5793684 YP_001597002.1 CDS COXBURSA331_A1278 NC_010117.1 1152932 1154941 R identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733; OPT family oligopeptide transporter complement(1152932..1154941) Coxiella burnetii RSA 331 5794101 YP_001597003.1 CDS COXBURSA331_A1279 NC_010117.1 1154992 1155714 R identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050; RNA methyltransferase complement(1154992..1155714) Coxiella burnetii RSA 331 5794131 YP_001597004.1 CDS suhB NC_010117.1 1155907 1156707 D identified by match to protein family HMM PF00459; inositol-1-monophosphatase 1155907..1156707 Coxiella burnetii RSA 331 5794234 YP_001597005.1 CDS COXBURSA331_A1281 NC_010117.1 1156779 1157234 R identified by glimmer; putative; hypothetical protein complement(1156779..1157234) Coxiella burnetii RSA 331 5792955 YP_001597006.1 CDS COXBURSA331_A1282 NC_010117.1 1157380 1157718 D identified by glimmer; putative; hypothetical protein 1157380..1157718 Coxiella burnetii RSA 331 5793569 YP_001597007.1 CDS enhC NC_010117.1 1157881 1161015 R identified by match to protein family HMM PF08238; enhanced entry protein EnhC complement(1157881..1161015) Coxiella burnetii RSA 331 5793900 YP_001597008.1 CDS enhB NC_010117.1 1161012 1161566 R enhanced entry protein EnhB complement(1161012..1161566) Coxiella burnetii RSA 331 5793891 YP_001597009.1 CDS enhA1 NC_010117.1 1161569 1162306 R identified by match to protein family HMM PF03734; enhanced entry protein EnhA complement(1161569..1162306) Coxiella burnetii RSA 331 5793127 YP_001597010.1 CDS COXBURSA331_A1286 NC_010117.1 1162603 1162755 R identified by glimmer; putative; hypothetical protein complement(1162603..1162755) Coxiella burnetii RSA 331 5793631 YP_001597011.1 CDS COXBURSA331_A1287 NC_010117.1 1162827 1162949 R identified by glimmer; putative; hypothetical protein complement(1162827..1162949) Coxiella burnetii RSA 331 5794331 YP_001597012.1 CDS COXBURSA331_A1288 NC_010117.1 1163405 1163866 D identified by glimmer; putative; hypothetical protein 1163405..1163866 Coxiella burnetii RSA 331 5792734 YP_001597013.1 CDS COXBURSA331_A1290 NC_010117.1 1164015 1164233 D identified by glimmer; putative; hypothetical protein 1164015..1164233 Coxiella burnetii RSA 331 5792901 YP_001597014.1 CDS secF NC_010117.1 1164230 1165144 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(1164230..1165144) Coxiella burnetii RSA 331 5793886 YP_001597015.1 CDS secD NC_010117.1 1165144 1167012 R identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129; protein-export membrane protein SecD complement(1165144..1167012) Coxiella burnetii RSA 331 5793834 YP_001597016.1 CDS yajC NC_010117.1 1167028 1167378 R identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase subunit YajC complement(1167028..1167378) Coxiella burnetii RSA 331 5793833 YP_001597017.1 CDS COXBURSA331_A1293 NC_010117.1 1167439 1167879 R identified by glimmer; putative; hypothetical protein complement(1167439..1167879) Coxiella burnetii RSA 331 5792839 YP_001597018.1 CDS COXBURSA331_A1294 NC_010117.1 1167938 1168078 R identified by glimmer; putative; hypothetical protein complement(1167938..1168078) Coxiella burnetii RSA 331 5793769 YP_001597019.1 CDS COXBURSA331_A1296 NC_010117.1 1168077 1169096 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1168077..1169096 Coxiella burnetii RSA 331 5794380 YP_001597020.1 CDS COXBURSA331_A1295 NC_010117.1 1169093 1169365 R identified by glimmer; putative; hypothetical protein complement(1169093..1169365) Coxiella burnetii RSA 331 5794378 YP_001597021.1 CDS mnmA NC_010117.1 1172827 1173915 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1172827..1173915 Coxiella burnetii RSA 331 5793687 YP_001597022.1 CDS mfd NC_010117.1 1173927 1177400 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 1173927..1177400 Coxiella burnetii RSA 331 5793664 YP_001597023.1 CDS COXBURSA331_A1300 NC_010117.1 1177544 1178230 D identified by glimmer; putative; hypothetical protein 1177544..1178230 Coxiella burnetii RSA 331 5793592 YP_001597024.1 CDS COXBURSA331_A1301 NC_010117.1 1178249 1178902 R identified by match to protein family HMM PF00702; HAD superfamily hydrolase complement(1178249..1178902) Coxiella burnetii RSA 331 5794512 YP_001597025.2 CDS trpBF NC_010117.1 1182907 1184709 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate; catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta 1182907..1184709 Coxiella burnetii RSA 331 5792868 YP_001597026.1 CDS trpA NC_010117.1 1184726 1185529 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1184726..1185529 Coxiella burnetii RSA 331 5793873 YP_001597027.1 CDS COXBURSA331_A1307 NC_010117.1 1185526 1186227 R putative lipoprotein complement(1185526..1186227) Coxiella burnetii RSA 331 5794415 YP_001597028.1 CDS COXBURSA331_A1309 NC_010117.1 1186352 1187719 D identified by match to protein family HMM PF01222; putative 7-dehydrocholesterol reductase 1186352..1187719 Coxiella burnetii RSA 331 5793626 YP_001597029.1 CDS COXBURSA331_A1310 NC_010117.1 1188163 1189338 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1188163..1189338 Coxiella burnetii RSA 331 5792740 YP_001597030.1 CDS COXBURSA331_A1311 NC_010117.1 1189838 1191169 R identified by match to protein family HMM PF07690; major facilitator family transporter complement(1189838..1191169) Coxiella burnetii RSA 331 5792867 YP_001597031.1 CDS COXBURSA331_A1314 NC_010117.1 1191715 1192101 R identified by glimmer; putative; hypothetical protein complement(1191715..1192101) Coxiella burnetii RSA 331 5792846 YP_001597032.1 CDS COXBURSA331_A1315 NC_010117.1 1192156 1192317 R identified by glimmer; putative; hypothetical protein complement(1192156..1192317) Coxiella burnetii RSA 331 5793160 YP_001597033.1 CDS COXBURSA331_A1316 NC_010117.1 1192314 1192973 R hypothetical protein complement(1192314..1192973) Coxiella burnetii RSA 331 5793209 YP_001597034.1 CDS COXBURSA331_A1319 NC_010117.1 1193332 1194888 D identified by match to protein family HMM PF00069; protein kinase domain-containing protein 1193332..1194888 Coxiella burnetii RSA 331 5792888 YP_001597035.1 CDS COXBURSA331_A1320 NC_010117.1 1195028 1195483 D identified by match to protein family HMM PF00011; Hsp20/alpha crystallin family protein 1195028..1195483 Coxiella burnetii RSA 331 5792871 YP_001597036.1 CDS COXBURSA331_A1321 NC_010117.1 1195632 1195838 D identified by match to protein family HMM PF04070; hypothetical protein 1195632..1195838 Coxiella burnetii RSA 331 5794072 YP_001597037.1 CDS COXBURSA331_A1322 NC_010117.1 1195912 1196331 R identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein complement(1195912..1196331) Coxiella burnetii RSA 331 5793033 YP_001597038.1 CDS COXBURSA331_A1324 NC_010117.1 1198046 1198414 D identified by glimmer; putative; hypothetical protein 1198046..1198414 Coxiella burnetii RSA 331 5793046 YP_001597039.1 CDS COXBURSA331_A1326 NC_010117.1 1198914 1199891 R identified by glimmer; putative; hypothetical protein complement(1198914..1199891) Coxiella burnetii RSA 331 5793701 YP_001597040.1 CDS COXBURSA331_A1328 NC_010117.1 1202489 1203622 D identified by glimmer; putative; hypothetical protein 1202489..1203622 Coxiella burnetii RSA 331 5793871 YP_001597041.1 CDS COXBURSA331_A1329 NC_010117.1 1203665 1204861 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; Bcr/CflA subfamily drug resistance transporter 1203665..1204861 Coxiella burnetii RSA 331 5792890 YP_001597042.1 CDS thiI NC_010117.1 1205051 1206229 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(1205051..1206229) Coxiella burnetii RSA 331 5793297 YP_001597043.1 CDS COXBURSA331_A1331 NC_010117.1 1206230 1207372 R identified by match to protein family HMM PF00266; class V aminotransferase complement(1206230..1207372) Coxiella burnetii RSA 331 5793121 YP_001597044.1 CDS COXBURSA331_A1332 NC_010117.1 1207616 1207939 D identified by match to protein family HMM PF00076; RNA-binding protein 1207616..1207939 Coxiella burnetii RSA 331 5794045 YP_001597045.1 CDS COXBURSA331_A1333 NC_010117.1 1208010 1208738 R identified by match to protein family HMM PF01553; acyltransferase complement(1208010..1208738) Coxiella burnetii RSA 331 5793350 YP_001597046.1 CDS uvrC NC_010117.1 1208841 1210670 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(1208841..1210670) Coxiella burnetii RSA 331 5794052 YP_001597047.1 CDS COXBURSA331_A1335 NC_010117.1 1210683 1210808 R identified by glimmer; putative; hypothetical protein complement(1210683..1210808) Coxiella burnetii RSA 331 5792972 YP_001597048.1 CDS COXBURSA331_A1338 NC_010117.1 1211257 1212276 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1211257..1212276 Coxiella burnetii RSA 331 5793426 YP_001597049.1 CDS COXBURSA331_A1337 NC_010117.1 1212273 1212545 R identified by glimmer; putative; hypothetical protein complement(1212273..1212545) Coxiella burnetii RSA 331 5793034 YP_001597050.1 CDS COXBURSA331_A1340 NC_010117.1 1212953 1213600 D hypothetical protein 1212953..1213600 Coxiella burnetii RSA 331 5792983 YP_001597051.1 CDS serS NC_010117.1 1213597 1214868 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(1213597..1214868) Coxiella burnetii RSA 331 5793270 YP_001597052.1 CDS COXBURSA331_A1341 NC_010117.1 1214944 1216266 R identified by match to protein family HMM PF00004; recombination factor protein RarA complement(1214944..1216266) Coxiella burnetii RSA 331 5792836 YP_001597053.1 CDS lolA NC_010117.1 1216250 1216885 R identified by match to protein family HMM PF03548; match to protein family HMM TIGR00547; outer membrane lipoprotein carrier protein LolA complement(1216250..1216885) Coxiella burnetii RSA 331 5793102 YP_001597054.1 CDS COXBURSA331_A1343 NC_010117.1 1216897 1219233 R identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein complement(1216897..1219233) Coxiella burnetii RSA 331 5792956 YP_001597055.1 CDS trxB NC_010117.1 1219357 1220319 D identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 1219357..1220319 Coxiella burnetii RSA 331 5792739 YP_001597056.1 CDS COXBURSA331_A1345 NC_010117.1 1220345 1221781 D identified by glimmer; putative; hypothetical protein 1220345..1221781 Coxiella burnetii RSA 331 5793385 YP_001597057.1 CDS infA NC_010117.1 1221843 1222094 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1221843..1222094 Coxiella burnetii RSA 331 5794229 YP_001597058.1 CDS clpA NC_010117.1 1222157 1224418 R identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR02639; ATP-dependent Clp protease ATP-binding subunit ClpA complement(1222157..1224418) Coxiella burnetii RSA 331 5792971 YP_001597059.1 CDS COXBURSA331_A1348 NC_010117.1 1224882 1225277 D identified by glimmer; putative; hypothetical protein 1224882..1225277 Coxiella burnetii RSA 331 5793099 YP_001597060.1 CDS icd NC_010117.1 1225446 1226729 R identified by match to protein family HMM PF00180; match to protein family HMM TIGR00183; isocitrate dehydrogenase complement(1225446..1226729) Coxiella burnetii RSA 331 5792946 YP_001597061.1 CDS queA NC_010117.1 1226776 1227807 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(1226776..1227807) Coxiella burnetii RSA 331 5793349 YP_001597062.1 CDS COXBURSA331_A1351 NC_010117.1 1227924 1228775 D hypothetical protein 1227924..1228775 Coxiella burnetii RSA 331 5793398 YP_001597063.1 CDS COXBURSA331_A1352 NC_010117.1 1228839 1230491 D identified by match to protein family HMM PF01645; glutamate synthase domain-containing protein 1228839..1230491 Coxiella burnetii RSA 331 5793704 YP_001597064.1 CDS COXBURSA331_A1354 NC_010117.1 1231971 1233317 R identified by match to protein family HMM PF01222; putative delta(24(24(1)))-sterol reductase complement(1231971..1233317) Coxiella burnetii RSA 331 5793670 YP_001597065.1 CDS COXBURSA331_A1355 NC_010117.1 1233368 1233508 R identified by glimmer; putative; hypothetical protein complement(1233368..1233508) Coxiella burnetii RSA 331 5792945 YP_001597066.1 CDS COXBURSA331_A1356 NC_010117.1 1233747 1234871 D identified by match to protein family HMM PF07690; major facilitator family transporter 1233747..1234871 Coxiella burnetii RSA 331 5793029 YP_001597067.1 CDS COXBURSA331_A1358 NC_010117.1 1236969 1238096 D identified by glimmer; putative; hypothetical protein 1236969..1238096 Coxiella burnetii RSA 331 5793630 YP_001597068.1 CDS COXBURSA331_A1361 NC_010117.1 1238426 1239445 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1238426..1239445 Coxiella burnetii RSA 331 5793288 YP_001597069.1 CDS COXBURSA331_A1360 NC_010117.1 1239442 1239714 R identified by glimmer; putative; hypothetical protein complement(1239442..1239714) Coxiella burnetii RSA 331 5792735 YP_001597070.1 CDS COXBURSA331_A1362 NC_010117.1 1239822 1240940 R identified by glimmer; putative; hypothetical protein complement(1239822..1240940) Coxiella burnetii RSA 331 5793410 YP_001597071.1 CDS purC NC_010117.1 1240941 1241663 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(1240941..1241663) Coxiella burnetii RSA 331 5792754 YP_001597072.1 CDS COXBURSA331_A1364 NC_010117.1 1241663 1242256 R putative lipoprotein complement(1241663..1242256) Coxiella burnetii RSA 331 5793113 YP_001597073.1 CDS dapA NC_010117.1 1242273 1243142 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(1242273..1243142) Coxiella burnetii RSA 331 5793109 YP_001597074.1 CDS kdgK NC_010117.1 1243379 1244308 R identified by match to protein family HMM PF00294; 2-dehydro-3-deoxygluconokinase complement(1243379..1244308) Coxiella burnetii RSA 331 5793406 YP_001597075.1 CDS COXBURSA331_A1368 NC_010117.1 1244348 1245628 D identified by match to protein family HMM PF02646; RmuC family protein 1244348..1245628 Coxiella burnetii RSA 331 5793026 YP_001597076.1 CDS COXBURSA331_A1369 NC_010117.1 1245733 1245930 R putative lipoprotein complement(1245733..1245930) Coxiella burnetii RSA 331 5792966 YP_001597077.1 CDS COXBURSA331_A1370 NC_010117.1 1246041 1246922 R catalyzes the cleavage of carbon-halogen bonds in aliphatic compounds forming a primary alcohol and a halide; haloalkane dehalogenase complement(1246041..1246922) Coxiella burnetii RSA 331 5792828 YP_001597078.1 CDS COXBURSA331_A1371 NC_010117.1 1246946 1251805 R identified by match to protein family HMM PF05088; putative glutamate dehydrogenase, NAD-specific complement(1246946..1251805) Coxiella burnetii RSA 331 5793573 YP_001597079.1 CDS COXBURSA331_A1372 NC_010117.1 1252041 1252712 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulatory protein 1252041..1252712 Coxiella burnetii RSA 331 5793342 YP_001597080.1 CDS qseC NC_010117.1 1252709 1254145 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor protein qseC 1252709..1254145 Coxiella burnetii RSA 331 5794081 YP_001597081.1 CDS COXBURSA331_A1374 NC_010117.1 1254375 1256963 D hypothetical protein 1254375..1256963 Coxiella burnetii RSA 331 5793442 YP_001597082.1 CDS COXBURSA331_A1375 NC_010117.1 1256960 1260292 D identified by match to protein family HMM PF00580; UvrD/REP helicase family protein 1256960..1260292 Coxiella burnetii RSA 331 5792694 YP_001597083.1 CDS COXBURSA331_A1376 NC_010117.1 1260437 1261135 R identified by glimmer; putative; hypothetical protein complement(1260437..1261135) Coxiella burnetii RSA 331 5793482 YP_001597084.1 CDS COXBURSA331_A1377 NC_010117.1 1261414 1262316 D identified by match to protein family HMM PF06189; 5'-nucleotidase 1261414..1262316 Coxiella burnetii RSA 331 5793343 YP_001597085.1 CDS COXBURSA331_A1378 NC_010117.1 1262391 1263665 D hypothetical protein 1262391..1263665 Coxiella burnetii RSA 331 5793382 YP_001597086.1 CDS orn NC_010117.1 1263824 1264375 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 1263824..1264375 Coxiella burnetii RSA 331 5793863 YP_001597087.1 CDS COXBURSA331_A1380 NC_010117.1 1264825 1265211 R identified by match to protein family HMM PF01850; PilT domain-containing protein complement(1264825..1265211) Coxiella burnetii RSA 331 5793720 YP_001597088.1 CDS COXBURSA331_A1381 NC_010117.1 1265220 1265474 R identified by match to protein family HMM PF01402; CopG family protein complement(1265220..1265474) Coxiella burnetii RSA 331 5793224 YP_001597089.1 CDS COXBURSA331_A1382 NC_010117.1 1265619 1266200 D identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; hypothetical protein 1265619..1266200 Coxiella burnetii RSA 331 5793586 YP_001597090.1 CDS gcp NC_010117.1 1266276 1267295 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(1266276..1267295) Coxiella burnetii RSA 331 5793581 YP_001597091.1 CDS mdh NC_010117.1 1267304 1268290 R catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase complement(1267304..1268290) Coxiella burnetii RSA 331 5793123 YP_001597092.1 CDS COXBURSA331_A1385 NC_010117.1 1268485 1269711 R identified by match to protein family HMM PF03349; OMPP1/FadL/TodX family outer membrane protein complement(1268485..1269711) Coxiella burnetii RSA 331 5793177 YP_001597093.1 CDS xseA NC_010117.1 1269845 1271089 D identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237; exodeoxyribonuclease VII large subunit 1269845..1271089 Coxiella burnetii RSA 331 5793656 YP_001597094.1 CDS COXBURSA331_A1389 NC_010117.1 1272715 1273734 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1272715..1273734 Coxiella burnetii RSA 331 5792900 YP_001597095.1 CDS COXBURSA331_A1388 NC_010117.1 1273731 1274003 R identified by glimmer; putative; hypothetical protein complement(1273731..1274003) Coxiella burnetii RSA 331 5794141 YP_001597096.1 CDS engA NC_010117.1 1274124 1275455 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(1274124..1275455) Coxiella burnetii RSA 331 5794480 YP_001597097.1 CDS COXBURSA331_A1391 NC_010117.1 1275455 1275661 D identified by glimmer; putative; hypothetical protein 1275455..1275661 Coxiella burnetii RSA 331 5793635 YP_001597098.1 CDS COXBURSA331_A1392 NC_010117.1 1275693 1276313 R hypothetical protein complement(1275693..1276313) Coxiella burnetii RSA 331 5793710 YP_001597099.1 CDS hisS NC_010117.1 1276336 1277601 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(1276336..1277601) Coxiella burnetii RSA 331 5794517 YP_001597100.1 CDS COXBURSA331_A1394 NC_010117.1 1277598 1278230 R putative DNA-binding protein complement(1277598..1278230) Coxiella burnetii RSA 331 5793825 YP_001597101.1 CDS COXBURSA331_A1395 NC_010117.1 1278346 1278477 R identified by glimmer; putative; hypothetical protein complement(1278346..1278477) Coxiella burnetii RSA 331 5793529 YP_001597102.1 CDS COXBURSA331_A1397 NC_010117.1 1279336 1280448 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048; radical SAM protein complement(1279336..1280448) Coxiella burnetii RSA 331 5794195 YP_001597103.1 CDS COXBURSA331_A1398 NC_010117.1 1280664 1281101 D identified by glimmer; putative; hypothetical protein 1280664..1281101 Coxiella burnetii RSA 331 5794194 YP_001597104.1 CDS COXBURSA331_A1399 NC_010117.1 1281333 1282859 D identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 1281333..1282859 Coxiella burnetii RSA 331 5794339 YP_001597105.1 CDS COXBURSA331_A1400 NC_010117.1 1283202 1284005 R identified by match to protein family HMM PF00348; polyprenyl synthetase family protein complement(1283202..1284005) Coxiella burnetii RSA 331 5794336 YP_001597106.1 CDS COXBURSA331_A1401 NC_010117.1 1284037 1284153 D identified by glimmer; putative; hypothetical protein 1284037..1284153 Coxiella burnetii RSA 331 5794898 YP_001597107.1 CDS COXBURSA331_A1403 NC_010117.1 1284146 1284550 D hypothetical protein 1284146..1284550 Coxiella burnetii RSA 331 5793752 YP_001597108.1 CDS ndk NC_010117.1 1284536 1284970 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(1284536..1284970) Coxiella burnetii RSA 331 5794907 YP_001597109.1 CDS COXBURSA331_A1404 NC_010117.1 1285106 1286704 D identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831; Na+/H+ antiporter 1285106..1286704 Coxiella burnetii RSA 331 5793085 YP_001597110.1 CDS COXBURSA331_A1406 NC_010117.1 1286836 1287855 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1286836..1287855 Coxiella burnetii RSA 331 5792826 YP_001597111.1 CDS COXBURSA331_A1405 NC_010117.1 1287852 1288124 R identified by glimmer; putative; hypothetical protein complement(1287852..1288124) Coxiella burnetii RSA 331 5794321 YP_001597112.1 CDS COXBURSA331_A1407 NC_010117.1 1288517 1289263 D identified by match to protein family HMM PF01389; OmpA-like transmembrane domain-containing protein 1288517..1289263 Coxiella burnetii RSA 331 5793880 YP_001597113.1 CDS COXBURSA331_A1408 NC_010117.1 1289361 1290617 D identified by match to protein family HMM PF00768; match to protein family HMM PF07943; D-alanyl-D-alanine carboxypeptidase 1289361..1290617 Coxiella burnetii RSA 331 5794800 YP_001597114.1 CDS COXBURSA331_A1409 NC_010117.1 1290614 1290877 D identified by match to protein family HMM PF04359; hypothetical protein 1290614..1290877 Coxiella burnetii RSA 331 5792927 YP_001597115.1 CDS COXBURSA331_A1410 NC_010117.1 1290901 1291287 D identified by glimmer; putative; hypothetical protein 1290901..1291287 Coxiella burnetii RSA 331 5793753 YP_001597116.1 CDS COXBURSA331_A1412 NC_010117.1 1291642 1291896 D identified by glimmer; putative; hypothetical protein 1291642..1291896 Coxiella burnetii RSA 331 5793824 YP_001597117.1 CDS lipB NC_010117.1 1291893 1292621 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 1291893..1292621 Coxiella burnetii RSA 331 5793934 YP_001597118.1 CDS lipA NC_010117.1 1292551 1293498 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1292551..1293498 Coxiella burnetii RSA 331 5794068 YP_001597119.1 CDS COXBURSA331_A1415 NC_010117.1 1293609 1295657 D identified by match to protein family HMM PF01569; match to protein family HMM PF09335; PAP2 (2 phosphatidic acid phosphatase) family protein 1293609..1295657 Coxiella burnetii RSA 331 5792845 YP_001597120.1 CDS COXBURSA331_A1416 NC_010117.1 1295849 1296910 R identified by match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase complement(1295849..1296910) Coxiella burnetii RSA 331 5792944 YP_001597121.1 CDS COXBURSA331_A1417 NC_010117.1 1296929 1297420 R identified by match to protein family HMM PF03061; thioesterase family protein complement(1296929..1297420) Coxiella burnetii RSA 331 5794387 YP_001597122.1 CDS COXBURSA331_A1418 NC_010117.1 1297479 1297583 R identified by glimmer; putative; hypothetical protein complement(1297479..1297583) Coxiella burnetii RSA 331 5792995 YP_001597123.1 CDS COXBURSA331_A1420 NC_010117.1 1297574 1297846 D identified by glimmer; putative; hypothetical protein 1297574..1297846 Coxiella burnetii RSA 331 5794465 YP_001597124.1 CDS COXBURSA331_A1419 NC_010117.1 1297843 1298862 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A complement(1297843..1298862) Coxiella burnetii RSA 331 5792763 YP_001597125.1 CDS COXBURSA331_A1421 NC_010117.1 1298954 1299070 R identified by glimmer; putative; hypothetical protein complement(1298954..1299070) Coxiella burnetii RSA 331 5794831 YP_001597126.1 CDS COXBURSA331_A1422 NC_010117.1 1299343 1300605 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 1299343..1300605 Coxiella burnetii RSA 331 5793171 YP_001597127.1 CDS COXBURSA331_A1423 NC_010117.1 1300607 1301089 R identified by glimmer; putative; hypothetical protein complement(1300607..1301089) Coxiella burnetii RSA 331 5794108 YP_001597128.1 CDS COXBURSA331_A1424 NC_010117.1 1301083 1302291 R identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase / muconate lactonizing enzyme complement(1301083..1302291) Coxiella burnetii RSA 331 5793999 YP_001597129.1 CDS COXBURSA331_A1425 NC_010117.1 1302322 1303128 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase complement(1302322..1303128) Coxiella burnetii RSA 331 5794176 YP_001597130.1 CDS eda NC_010117.1 1303272 1303898 D identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182; 2-dehydro-3-deoxyphosphogluconate aldolase 1303272..1303898 Coxiella burnetii RSA 331 5794373 YP_001597131.1 CDS COXBURSA331_A1427 NC_010117.1 1303909 1304466 D identified by match to protein family HMM PF00578; match to protein family HMM PF08534; anti-oxidant AhpCTSA family protein 1303909..1304466 Coxiella burnetii RSA 331 5793187 YP_001597132.1 CDS exoD NC_010117.1 1304454 1305056 D identified by match to protein family HMM PF06055; exopolysaccharide synthesis protein ExoD 1304454..1305056 Coxiella burnetii RSA 331 5794286 YP_001597133.1 CDS greA NC_010117.1 1305390 1305869 R identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462; transcription elongation factor GreA complement(1305390..1305869) Coxiella burnetii RSA 331 5793041 YP_001597134.1 CDS carB NC_010117.1 1306422 1309643 R identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02655; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM PF08443; match to protein family HMM TIGR01369; carbamoyl-phosphate synthase large subunit complement(1306422..1309643) Coxiella burnetii RSA 331 5793874 YP_001597135.1 CDS carA NC_010117.1 1309725 1310873 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1309725..1310873) Coxiella burnetii RSA 331 5793568 YP_001597136.1 CDS COXBURSA331_A1433 NC_010117.1 1312707 1314017 D hypothetical protein 1312707..1314017 Coxiella burnetii RSA 331 5793358 YP_001597137.1 CDS COXBURSA331_A1434 NC_010117.1 1314014 1315372 D identified by match to protein family HMM PF07690; MFS family transporter 1314014..1315372 Coxiella burnetii RSA 331 5792952 YP_001597138.1 CDS COXBURSA331_A1435 NC_010117.1 1315443 1316825 D hypothetical protein 1315443..1316825 Coxiella burnetii RSA 331 5793065 YP_001597139.1 CDS COXBURSA331_A1436 NC_010117.1 1316869 1318059 R identified by glimmer; putative; hypothetical protein complement(1316869..1318059) Coxiella burnetii RSA 331 5793492 YP_001597140.1 CDS COXBURSA331_A1437 NC_010117.1 1318148 1318645 R identified by glimmer; putative; hypothetical protein complement(1318148..1318645) Coxiella burnetii RSA 331 5793897 YP_001597141.1 CDS dnaJ NC_010117.1 1318745 1319869 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(1318745..1319869) Coxiella burnetii RSA 331 5793640 YP_001597142.1 CDS dnaK NC_010117.1 1320012 1321982 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1320012..1321982) Coxiella burnetii RSA 331 5794290 YP_001597143.1 CDS COXBURSA331_A1440 NC_010117.1 1322148 1322741 D identified by match to protein family HMM PF00364; putative biotin-requiring enzyme subunit 1322148..1322741 Coxiella burnetii RSA 331 5793848 YP_001597144.1 CDS COXBURSA331_A1441 NC_010117.1 1322744 1324141 D identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 1322744..1324141 Coxiella burnetii RSA 331 5793089 YP_001597145.1 CDS grpE NC_010117.1 1324271 1324885 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(1324271..1324885) Coxiella burnetii RSA 331 5792851 YP_001597146.1 CDS COXBURSA331_A1443 NC_010117.1 1324952 1325329 R identified by match to protein family HMM PF01850; PilT domain-containing protein complement(1324952..1325329) Coxiella burnetii RSA 331 5793076 YP_001597147.1 CDS COXBURSA331_A1444 NC_010117.1 1325319 1325597 R identified by glimmer; putative; hypothetical protein complement(1325319..1325597) Coxiella burnetii RSA 331 5792882 YP_001597148.1 CDS ppnK NC_010117.1 1325658 1326557 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1325658..1326557 Coxiella burnetii RSA 331 5794806 YP_001597149.1 CDS recN NC_010117.1 1326562 1328232 D identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein RecN 1326562..1328232 Coxiella burnetii RSA 331 5793304 YP_001597150.1 CDS COXBURSA331_A1449 NC_010117.1 1329061 1330218 R identified by glimmer; putative; hypothetical protein complement(1329061..1330218) Coxiella burnetii RSA 331 5794389 YP_001597151.1 CDS COXBURSA331_A1450 NC_010117.1 1330364 1330669 R identified by glimmer; putative; hypothetical protein complement(1330364..1330669) Coxiella burnetii RSA 331 5793163 YP_001597152.1 CDS fur NC_010117.1 1330722 1331189 R identified by match to protein family HMM PF01475; ferric uptake regulation protein complement(1330722..1331189) Coxiella burnetii RSA 331 5793576 YP_001597153.1 CDS COXBURSA331_A1452 NC_010117.1 1331641 1331946 R identified by match to protein family HMM PF03658; hypothetical protein complement(1331641..1331946) Coxiella burnetii RSA 331 5794482 YP_001597154.1 CDS COXBURSA331_A1454 NC_010117.1 1331943 1332383 R identified by match to protein family HMM PF03364; polyketide cyclase/dehydrase family protein complement(1331943..1332383) Coxiella burnetii RSA 331 5794069 YP_001597155.1 CDS smpB NC_010117.1 1332410 1332889 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1332410..1332889 Coxiella burnetii RSA 331 5794401 YP_001597156.1 CDS msrA NC_010117.1 1332882 1333736 D this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein 1332882..1333736 Coxiella burnetii RSA 331 5792884 YP_001597157.1 CDS COXBURSA331_A1457 NC_010117.1 1333737 1334153 R hypothetical protein complement(1333737..1334153) Coxiella burnetii RSA 331 5793300 YP_001597158.1 CDS COXBURSA331_A1458 NC_010117.1 1334612 1335181 D identified by match to protein family HMM PF01966; hypothetical protein 1334612..1335181 Coxiella burnetii RSA 331 5793061 YP_001597159.1 CDS COXBURSA331_A1461 NC_010117.1 1336825 1336989 R identified by glimmer; putative; hypothetical protein complement(1336825..1336989) Coxiella burnetii RSA 331 5794017 YP_001597160.1 CDS COXBURSA331_A1462 NC_010117.1 1336956 1339397 R identified by glimmer; putative; hypothetical protein complement(1336956..1339397) Coxiella burnetii RSA 331 5792799 YP_001597161.1 CDS COXBURSA331_A1463 NC_010117.1 1339559 1339672 D identified by glimmer; putative; hypothetical protein 1339559..1339672 Coxiella burnetii RSA 331 5794248 YP_001597162.1 CDS COXBURSA331_A1464 NC_010117.1 1339803 1339928 R identified by glimmer; putative; hypothetical protein complement(1339803..1339928) Coxiella burnetii RSA 331 5793506 YP_001597163.1 CDS COXBURSA331_A1465 NC_010117.1 1340137 1340757 R identified by glimmer; putative; hypothetical protein complement(1340137..1340757) Coxiella burnetii RSA 331 5793122 YP_001597164.1 CDS COXBURSA331_A1466 NC_010117.1 1341098 1341241 R acetate-CoA ligase, truncation complement(1341098..1341241) Coxiella burnetii RSA 331 5793336 YP_001597165.1 CDS COXBURSA331_A1467 NC_010117.1 1341474 1341650 R hypothetical protein complement(1341474..1341650) Coxiella burnetii RSA 331 5794349 YP_001597166.1 CDS COXBURSA331_A1468 NC_010117.1 1341856 1341984 R identified by glimmer; putative; hypothetical protein complement(1341856..1341984) Coxiella burnetii RSA 331 5794265 YP_001597167.1 CDS COXBURSA331_A1469 NC_010117.1 1342344 1342967 R identified by glimmer; putative; hypothetical protein complement(1342344..1342967) Coxiella burnetii RSA 331 5793401 YP_001597168.1 CDS COXBURSA331_A1471 NC_010117.1 1343159 1343539 R identified by match to protein family HMM PF00376; transcriptional regulator domain-containing protein complement(1343159..1343539) Coxiella burnetii RSA 331 5793126 YP_001597169.1 CDS ihfA NC_010117.1 1343508 1343819 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(1343508..1343819) Coxiella burnetii RSA 331 5793221 YP_001597170.1 CDS pheT NC_010117.1 1343824 1346202 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(1343824..1346202) Coxiella burnetii RSA 331 5793378 YP_001597171.1 CDS pheS NC_010117.1 1346202 1347188 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(1346202..1347188) Coxiella burnetii RSA 331 5794080 YP_001597172.1 CDS rplT NC_010117.1 1347265 1347624 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1347265..1347624) Coxiella burnetii RSA 331 5792710 YP_001597173.1 CDS rpmI NC_010117.1 1348264 1348458 R identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 complement(1348264..1348458) Coxiella burnetii RSA 331 5793192 YP_001597174.1 CDS infC NC_010117.1 1348439 1348948 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(1348439..1348948) Coxiella burnetii RSA 331 5793400 YP_001597175.1 CDS thrS NC_010117.1 1349032 1351014 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(1349032..1351014) Coxiella burnetii RSA 331 5793279 YP_001597176.1 CDS COXBURSA331_A1480 NC_010117.1 1351385 1352455 R identified by match to protein family HMM PF04055; hypothetical protein complement(1351385..1352455) Coxiella burnetii RSA 331 5794849 YP_001597177.1 CDS COXBURSA331_A1482 NC_010117.1 1353737 1353868 R identified by glimmer; putative; hypothetical protein complement(1353737..1353868) Coxiella burnetii RSA 331 5794284 YP_001597178.1 CDS COXBURSA331_A1483 NC_010117.1 1354023 1354400 D identified by glimmer; putative; hypothetical protein 1354023..1354400 Coxiella burnetii RSA 331 5793882 YP_001597179.1 CDS COXBURSA331_A1485 NC_010117.1 1354554 1355345 D identified by match to protein family HMM PF01925; hypothetical protein 1354554..1355345 Coxiella burnetii RSA 331 5794221 YP_001597180.1 CDS COXBURSA331_A1484 NC_010117.1 1355300 1356433 R hypothetical protein complement(1355300..1356433) Coxiella burnetii RSA 331 5793663 YP_001597181.1 CDS COXBURSA331_A1486 NC_010117.1 1356481 1356636 R identified by glimmer; putative; hypothetical protein complement(1356481..1356636) Coxiella burnetii RSA 331 5793644 YP_001597182.1 CDS dnaE NC_010117.1 1359100 1362531 R identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594; DNA polymerase III subunit alpha complement(1359100..1362531) Coxiella burnetii RSA 331 5793911 YP_001597183.1 CDS ddl NC_010117.1 1362533 1363651 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(1362533..1363651) Coxiella burnetii RSA 331 5793494 YP_001597184.1 CDS COXBURSA331_A1491 NC_010117.1 1363676 1363798 D identified by glimmer; putative; hypothetical protein 1363676..1363798 Coxiella burnetii RSA 331 5793415 YP_001597185.1 CDS rnhB NC_010117.1 1363801 1364409 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(1363801..1364409) Coxiella burnetii RSA 331 5793893 YP_001597186.1 CDS guaA NC_010117.1 1364705 1366279 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(1364705..1366279) Coxiella burnetii RSA 331 5792787 YP_001597187.1 CDS guaB NC_010117.1 1366316 1367785 R identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase complement(1366316..1367785) Coxiella burnetii RSA 331 5792892 YP_001597188.1 CDS COXBURSA331_A1496 NC_010117.1 1367879 1368256 R identified by glimmer; putative; hypothetical protein complement(1367879..1368256) Coxiella burnetii RSA 331 5794291 YP_001597189.1 CDS COXBURSA331_A1501 NC_010117.1 1372278 1373702 R identified by match to protein family HMM PF00324; amino acid permease family protein complement(1372278..1373702) Coxiella burnetii RSA 331 5794216 YP_001597190.1 CDS COXBURSA331_A1502 NC_010117.1 1373955 1374122 D identified by glimmer; putative; hypothetical protein 1373955..1374122 Coxiella burnetii RSA 331 5794829 YP_001597191.1 CDS glmM NC_010117.1 1376011 1377351 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(1376011..1377351) Coxiella burnetii RSA 331 5793434 YP_001597192.1 CDS folP NC_010117.1 1377440 1378309 R identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase complement(1377440..1378309) Coxiella burnetii RSA 331 5793148 YP_001597193.1 CDS COXBURSA331_A1507 NC_010117.1 1378297 1378416 D identified by glimmer; putative; hypothetical protein 1378297..1378416 Coxiella burnetii RSA 331 5793062 YP_001597194.1 CDS hflB NC_010117.1 1378385 1380328 R identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; ATP-dependent metallopeptidase HflB complement(1378385..1380328) Coxiella burnetii RSA 331 5794876 YP_001597195.1 CDS rrmJ NC_010117.1 1380348 1380986 R identified by match to protein family HMM PF01728; ribosomal RNA large subunit methyltransferase J complement(1380348..1380986) Coxiella burnetii RSA 331 5794071 YP_001597196.1 CDS COXBURSA331_A1509 NC_010117.1 1381008 1381550 R identified by match to protein family HMM PF01883; match to protein family HMM TIGR03406; hypothetical protein complement(1381008..1381550) Coxiella burnetii RSA 331 5793717 YP_001597197.1 CDS sufA NC_010117.1 1381552 1381905 R identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR01997; FeS assembly scaffold SufA complement(1381552..1381905) Coxiella burnetii RSA 331 5794062 YP_001597198.1 CDS COXBURSA331_A1511 NC_010117.1 1381902 1382348 R identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994; NifU family SUF system FeS assembly protein complement(1381902..1382348) Coxiella burnetii RSA 331 5794869 YP_001597199.1 CDS sufS NC_010117.1 1382371 1383588 R identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979; cysteine desulfurase SufS complement(1382371..1383588) Coxiella burnetii RSA 331 5794532 YP_001597200.1 CDS sufD NC_010117.1 1383581 1384861 R identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD complement(1383581..1384861) Coxiella burnetii RSA 331 5793750 YP_001597201.1 CDS sufC NC_010117.1 1384858 1385592 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC complement(1384858..1385592) Coxiella burnetii RSA 331 5793147 YP_001597202.1 CDS sufB NC_010117.1 1385616 1387058 R with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB complement(1385616..1387058) Coxiella burnetii RSA 331 5794092 YP_001597203.1 CDS sufR NC_010117.1 1387051 1387512 R identified by match to protein family HMM PF02082; match to protein family HMM PF08279; match to protein family HMM TIGR00738; match to protein family HMM TIGR02944; FeS assembly SUF system regulator complement(1387051..1387512) Coxiella burnetii RSA 331 5794794 YP_001597204.1 CDS COXBURSA331_A1517 NC_010117.1 1387721 1388857 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation diffusion facilitator family transporter 1387721..1388857 Coxiella burnetii RSA 331 5794213 YP_001597205.1 CDS COXBURSA331_A1518 NC_010117.1 1388850 1390226 D identified by match to protein family HMM PF00929; exonuclease 1388850..1390226 Coxiella burnetii RSA 331 5793645 YP_001597206.1 CDS COXBURSA331_A1519 NC_010117.1 1391107 1391220 R identified by glimmer; putative; hypothetical protein complement(1391107..1391220) Coxiella burnetii RSA 331 5792775 YP_001597207.1 CDS COXBURSA331_A1521 NC_010117.1 1391822 1392154 R identified by glimmer; putative; hypothetical protein complement(1391822..1392154) Coxiella burnetii RSA 331 5793566 YP_001597208.1 CDS COXBURSA331_A1522 NC_010117.1 1392336 1394078 R identified by match to protein family HMM PF07671; hypothetical protein complement(1392336..1394078) Coxiella burnetii RSA 331 5793450 YP_001597209.1 CDS COXBURSA331_A1523 NC_010117.1 1395245 1395415 R identified by glimmer; putative; hypothetical protein complement(1395245..1395415) Coxiella burnetii RSA 331 5793978 YP_001597210.1 CDS COXBURSA331_A1525 NC_010117.1 1395498 1395632 D identified by glimmer; putative; hypothetical protein 1395498..1395632 Coxiella burnetii RSA 331 5794509 YP_001597211.1 CDS COXBURSA331_A1526 NC_010117.1 1395692 1396678 R identified by glimmer; putative; hypothetical protein complement(1395692..1396678) Coxiella burnetii RSA 331 5792992 YP_001597212.1 CDS yeaZ NC_010117.1 1396871 1397551 R identified by match to protein family HMM PF00814; M22 peptidase-like protein yeaZ complement(1396871..1397551) Coxiella burnetii RSA 331 5794118 YP_001597213.1 CDS COXBURSA331_A1529 NC_010117.1 1397687 1398706 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1397687..1398706 Coxiella burnetii RSA 331 5794758 YP_001597214.1 CDS COXBURSA331_A1528 NC_010117.1 1398703 1398975 R identified by glimmer; putative; hypothetical protein complement(1398703..1398975) Coxiella burnetii RSA 331 5794382 YP_001597215.1 CDS COXBURSA331_A1530 NC_010117.1 1399069 1399650 R identified by glimmer; putative; hypothetical protein complement(1399069..1399650) Coxiella burnetii RSA 331 5794226 YP_001597216.1 CDS pabB NC_010117.1 1399751 1401043 D identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553; para-aminobenzoate synthase, component I 1399751..1401043 Coxiella burnetii RSA 331 5793225 YP_001597217.1 CDS COXBURSA331_A1532 NC_010117.1 1401040 1401519 D identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase family protein 1401040..1401519 Coxiella burnetii RSA 331 5793216 YP_001597218.1 CDS COXBURSA331_A1533 NC_010117.1 1401552 1403696 R identified by match to protein family HMM PF01842; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; RelA/SpoT family protein complement(1401552..1403696) Coxiella burnetii RSA 331 5793196 YP_001597219.1 CDS COXBURSA331_A1534 NC_010117.1 1403774 1405138 D identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; protease ecfE 1403774..1405138 Coxiella burnetii RSA 331 5792951 YP_001597220.1 CDS COXBURSA331_A1535 NC_010117.1 1405107 1405247 D identified by glimmer; putative; hypothetical protein 1405107..1405247 Coxiella burnetii RSA 331 5793395 YP_001597221.1 CDS COXBURSA331_A1536 NC_010117.1 1405646 1406401 R identified by glimmer; putative; hypothetical protein complement(1405646..1406401) Coxiella burnetii RSA 331 5793588 YP_001597222.1 CDS COXBURSA331_A1537 NC_010117.1 1406608 1407678 R identified by match to protein family HMM PF00069; protein kinase domain-containing protein complement(1406608..1407678) Coxiella burnetii RSA 331 5792824 YP_001597223.1 CDS COXBURSA331_A1538 NC_010117.1 1407903 1408622 D identified by glimmer; putative; hypothetical protein 1407903..1408622 Coxiella burnetii RSA 331 5793600 YP_001597224.1 CDS COXBURSA331_A1539 NC_010117.1 1408675 1409520 R identified by match to protein family HMM PF07681; DoxD family protein complement(1408675..1409520) Coxiella burnetii RSA 331 5793241 YP_001597225.1 CDS cdsA NC_010117.1 1409698 1410504 R identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase complement(1409698..1410504) Coxiella burnetii RSA 331 5794183 YP_001597226.1 CDS uppS NC_010117.1 1410506 1411219 R identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase complement(1410506..1411219) Coxiella burnetii RSA 331 5793803 YP_001597227.1 CDS frr NC_010117.1 1411216 1411773 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(1411216..1411773) Coxiella burnetii RSA 331 5794343 YP_001597228.1 CDS pyrH NC_010117.1 1411851 1412582 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(1411851..1412582) Coxiella burnetii RSA 331 5793381 YP_001597229.1 CDS tsf NC_010117.1 1412582 1413472 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(1412582..1413472) Coxiella burnetii RSA 331 5794342 YP_001597230.1 CDS rpsB NC_010117.1 1413482 1414423 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(1413482..1414423) Coxiella burnetii RSA 331 5794735 YP_001597231.1 CDS COXBURSA331_A1546 NC_010117.1 1414643 1415293 D identified by glimmer; putative; hypothetical protein 1414643..1415293 Coxiella burnetii RSA 331 5794158 YP_001597232.1 CDS map NC_010117.1 1415384 1416160 D identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase 1415384..1416160 Coxiella burnetii RSA 331 5793116 YP_001597233.1 CDS comB NC_010117.1 1419176 1419871 D identified by match to protein family HMM PF04029; 2-phosphosulfolactate phosphatase 1419176..1419871 Coxiella burnetii RSA 331 5793162 YP_001597234.1 CDS COXBURSA331_A1553 NC_010117.1 1423703 1424266 R non-ribosomal peptide synthetase complement(1423703..1424266) Coxiella burnetii RSA 331 5792993 YP_001597235.1 CDS COXBURSA331_A1554 NC_010117.1 1424469 1424996 D identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 1424469..1424996 Coxiella burnetii RSA 331 5793991 YP_001597236.1 CDS COXBURSA331_A1555 NC_010117.1 1425015 1425461 R hypothetical protein complement(1425015..1425461) Coxiella burnetii RSA 331 5794134 YP_001597237.1 CDS sucD NC_010117.1 1425458 1426342 R identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinate-CoA ligase (ADP-forming) subunit alpha complement(1425458..1426342) Coxiella burnetii RSA 331 5792899 YP_001597238.1 CDS sucC NC_010117.1 1426342 1427514 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(1426342..1427514) Coxiella burnetii RSA 331 5793244 YP_001597239.1 CDS sucB NC_010117.1 1427716 1428924 R identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex complement(1427716..1428924) Coxiella burnetii RSA 331 5793303 YP_001597240.1 CDS sucA NC_010117.1 1428934 1431738 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(1428934..1431738) Coxiella burnetii RSA 331 5793319 YP_001597241.1 CDS sdhB NC_010117.1 1431762 1432493 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(1431762..1432493) Coxiella burnetii RSA 331 5794119 YP_001597242.1 CDS sdhA NC_010117.1 1432500 1434263 R identified by match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01812; match to protein family HMM TIGR01816; succinate dehydrogenase, flavoprotein subunit complement(1432500..1434263) Coxiella burnetii RSA 331 5794796 YP_001597243.1 CDS sdhD NC_010117.1 1434276 1434617 R identified by match to protein family HMM TIGR02968; succinate dehydrogenase, hydrophobic membrane anchor protein complement(1434276..1434617) Coxiella burnetii RSA 331 5794821 YP_001597244.1 CDS sdhC NC_010117.1 1434611 1434988 R identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970; succinate dehydrogenase, cytochrome b556 subunit complement(1434611..1434988) Coxiella burnetii RSA 331 5793207 YP_001597245.1 CDS COXBURSA331_A1564 NC_010117.1 1434944 1435093 D identified by glimmer; putative; hypothetical protein 1434944..1435093 Coxiella burnetii RSA 331 5794835 YP_001597246.1 CDS COXBURSA331_A1569 NC_010117.1 1437091 1437363 D identified by glimmer; putative; hypothetical protein 1437091..1437363 Coxiella burnetii RSA 331 5793603 YP_001597247.1 CDS COXBURSA331_A1568 NC_010117.1 1437360 1438379 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A complement(1437360..1438379) Coxiella burnetii RSA 331 5793040 YP_001597248.1 CDS gltA NC_010117.1 1438597 1439889 D identified by match to protein family HMM PF00285; match to protein family HMM TIGR01798; citrate (Si)-synthase 1438597..1439889 Coxiella burnetii RSA 331 5794254 YP_001597249.1 CDS COXBURSA331_A1572 NC_010117.1 1439927 1440097 D identified by glimmer; putative; hypothetical protein 1439927..1440097 Coxiella burnetii RSA 331 5794132 YP_001597250.1 CDS COXBURSA331_A1571 NC_010117.1 1439985 1440107 R identified by glimmer; putative; hypothetical protein complement(1439985..1440107) Coxiella burnetii RSA 331 5793960 YP_001597251.1 CDS COXBURSA331_A1573 NC_010117.1 1440141 1440962 R identified by glimmer; putative; hypothetical protein complement(1440141..1440962) Coxiella burnetii RSA 331 5794474 YP_001597252.1 CDS COXBURSA331_A1574 NC_010117.1 1440985 1441764 R hypothetical protein complement(1440985..1441764) Coxiella burnetii RSA 331 5794867 YP_001597253.1 CDS COXBURSA331_A1575 NC_010117.1 1441808 1442599 R identified by glimmer; putative; hypothetical protein complement(1441808..1442599) Coxiella burnetii RSA 331 5794133 YP_001597254.1 CDS thiL NC_010117.1 1442691 1443653 R identified by match to protein family HMM PF02769; match to protein family HMM TIGR01379; thiamine-monophosphate kinase complement(1442691..1443653) Coxiella burnetii RSA 331 5793424 YP_001597255.1 CDS COXBURSA331_A1577 NC_010117.1 1443844 1444494 D identified by match to protein family HMM PF00717; peptidase S24-like domain-containing protein 1443844..1444494 Coxiella burnetii RSA 331 5793323 YP_001597256.1 CDS nusB NC_010117.1 1444617 1445033 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(1444617..1445033) Coxiella burnetii RSA 331 5792962 YP_001597257.1 CDS nrdR NC_010117.1 1445023 1445496 R identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR complement(1445023..1445496) Coxiella burnetii RSA 331 5794344 YP_001597258.1 CDS glyA NC_010117.1 1445496 1446755 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(1445496..1446755) Coxiella burnetii RSA 331 5794868 YP_001597259.1 CDS COXBURSA331_A1581 NC_010117.1 1447118 1447954 D identified by glimmer; putative; hypothetical protein 1447118..1447954 Coxiella burnetii RSA 331 5794283 YP_001597260.1 CDS radA NC_010117.1 1448046 1449401 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(1448046..1449401) Coxiella burnetii RSA 331 5794114 YP_001597261.1 CDS COXBURSA331_A1583 NC_010117.1 1449481 1449624 D identified by glimmer; putative; hypothetical protein 1449481..1449624 Coxiella burnetii RSA 331 5794381 YP_001597262.1 CDS hemB NC_010117.1 1449774 1450778 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(1449774..1450778) Coxiella burnetii RSA 331 5794172 YP_001597263.1 CDS COXBURSA331_A1585 NC_010117.1 1450796 1451248 R identified by match to protein family HMM PF05433; surface antigen complement(1450796..1451248) Coxiella burnetii RSA 331 5792716 YP_001597264.1 CDS COXBURSA331_A1586 NC_010117.1 1451233 1451346 D identified by glimmer; putative; hypothetical protein 1451233..1451346 Coxiella burnetii RSA 331 5794142 YP_001597265.1 CDS COXBURSA331_A1587 NC_010117.1 1451446 1451562 D identified by glimmer; putative; hypothetical protein 1451446..1451562 Coxiella burnetii RSA 331 5794851 YP_001597266.1 CDS COXBURSA331_A1589 NC_010117.1 1456469 1457170 R identified by glimmer; putative; hypothetical protein complement(1456469..1457170) Coxiella burnetii RSA 331 5794191 YP_001597267.1 CDS COXBURSA331_A1591 NC_010117.1 1457374 1458393 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1457374..1458393 Coxiella burnetii RSA 331 5793280 YP_001597268.1 CDS COXBURSA331_A1590 NC_010117.1 1458390 1458662 R identified by glimmer; putative; hypothetical protein complement(1458390..1458662) Coxiella burnetii RSA 331 5793567 YP_001597269.1 CDS COXBURSA331_A1592 NC_010117.1 1458638 1458802 D identified by glimmer; putative; hypothetical protein 1458638..1458802 Coxiella burnetii RSA 331 5793204 YP_001597270.1 CDS COXBURSA331_A1593 NC_010117.1 1458778 1459323 D hypothetical protein 1458778..1459323 Coxiella burnetii RSA 331 5793249 YP_001597271.1 CDS COXBURSA331_A1595 NC_010117.1 1459674 1460693 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1459674..1460693 Coxiella burnetii RSA 331 5793785 YP_001597272.1 CDS COXBURSA331_A1596 NC_010117.1 1460719 1460961 R identified by glimmer; putative; hypothetical protein complement(1460719..1460961) Coxiella burnetii RSA 331 5794798 YP_001597273.1 CDS COXBURSA331_A1597 NC_010117.1 1460968 1461108 D identified by glimmer; putative; hypothetical protein 1460968..1461108 Coxiella burnetii RSA 331 5794856 YP_001597274.1 CDS truB NC_010117.1 1461502 1462431 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(1461502..1462431) Coxiella burnetii RSA 331 5793624 YP_001597275.1 CDS rbfA NC_010117.1 1462409 1462768 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(1462409..1462768) Coxiella burnetii RSA 331 5794200 YP_001597276.1 CDS infB NC_010117.1 1462856 1465267 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(1462856..1465267) Coxiella burnetii RSA 331 5794341 YP_001597277.1 CDS nusA NC_010117.1 1465273 1466784 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(1465273..1466784) Coxiella burnetii RSA 331 5792780 YP_001597278.1 CDS COXBURSA331_A1602 NC_010117.1 1466788 1467249 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(1466788..1467249) Coxiella burnetii RSA 331 5793830 YP_001597279.1 CDS nuoN NC_010117.1 1467627 1469075 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(1467627..1469075) Coxiella burnetii RSA 331 5794086 YP_001597280.1 CDS nuoM NC_010117.1 1469085 1470605 R identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH dehydrogenase (ubiquinone) subunit M complement(1469085..1470605) Coxiella burnetii RSA 331 5793354 YP_001597281.1 CDS nuoL NC_010117.1 1470610 1472571 R identified by match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974; NADH dehydrogenase (ubiquinone) subunit L complement(1470610..1472571) Coxiella burnetii RSA 331 5793502 YP_001597282.1 CDS nuoK NC_010117.1 1472628 1472933 R identified by match to protein family HMM PF00420; NADH dehydrogenase (ubiquinone) subunit K complement(1472628..1472933) Coxiella burnetii RSA 331 5793795 YP_001597283.1 CDS nuoJ NC_010117.1 1472930 1473535 R identified by match to protein family HMM PF00499; NADH dehydrogenase (ubiquinone) subunit J complement(1472930..1473535) Coxiella burnetii RSA 331 5792803 YP_001597284.1 CDS nuoI NC_010117.1 1473549 1474040 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(1473549..1474040) Coxiella burnetii RSA 331 5793052 YP_001597285.1 CDS nuoH NC_010117.1 1474037 1475059 R identified by match to protein family HMM PF00146; NADH dehydrogenase (ubiquinone) subunit H complement(1474037..1475059) Coxiella burnetii RSA 331 5794693 YP_001597286.1 CDS nuoG NC_010117.1 1475059 1477422 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G complement(1475059..1477422) Coxiella burnetii RSA 331 5792741 YP_001597287.1 CDS COXBURSA331_A1612 NC_010117.1 1477433 1477552 R identified by glimmer; putative; hypothetical protein complement(1477433..1477552) Coxiella burnetii RSA 331 5793043 YP_001597288.1 CDS nuoF NC_010117.1 1477533 1478801 R identified by match to protein family HMM PF01512; match to protein family HMM TIGR01959; NADH dehydrogenase (ubiquinone) subunit F complement(1477533..1478801) Coxiella burnetii RSA 331 5793815 YP_001597289.1 CDS nuoE NC_010117.1 1478791 1479315 R identified by match to protein family HMM PF01257; match to protein family HMM TIGR01958; NADH dehydrogenase (ubiquinone) subunit E complement(1478791..1479315) Coxiella burnetii RSA 331 5794784 YP_001597290.1 CDS nuoD NC_010117.1 1479315 1480568 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(1479315..1480568) Coxiella burnetii RSA 331 5793264 YP_001597291.1 CDS nuoC NC_010117.1 1480561 1481244 R identified by match to protein family HMM PF00329; match to protein family HMM TIGR01961; NADH dehydrogenase (ubiquinone) subunit C complement(1480561..1481244) Coxiella burnetii RSA 331 5793671 YP_001597292.1 CDS nuoB NC_010117.1 1481254 1481739 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(1481254..1481739) Coxiella burnetii RSA 331 5793943 YP_001597293.1 CDS nuoA NC_010117.1 1481744 1482100 R identified by match to protein family HMM PF00507; NADH dehydrogenase (ubiquinone) subunit A complement(1481744..1482100) Coxiella burnetii RSA 331 5793942 YP_001597294.1 CDS secG NC_010117.1 1482397 1482693 R identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG complement(1482397..1482693) Coxiella burnetii RSA 331 5793299 YP_001597295.1 CDS tpiA NC_010117.1 1482675 1483442 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(1482675..1483442) Coxiella burnetii RSA 331 5792859 YP_001597296.1 CDS COXBURSA331_A1622 NC_010117.1 1483508 1483639 R identified by glimmer; putative; hypothetical protein complement(1483508..1483639) Coxiella burnetii RSA 331 5793805 YP_001597297.1 CDS COXBURSA331_A1623 NC_010117.1 1484295 1485863 R hypothetical protein complement(1484295..1485863) Coxiella burnetii RSA 331 5794420 YP_001597298.1 CDS COXBURSA331_A1624 NC_010117.1 1486455 1487762 R identified by glimmer; putative; hypothetical protein complement(1486455..1487762) Coxiella burnetii RSA 331 5793811 YP_001597299.1 CDS COXBURSA331_A1625 NC_010117.1 1487753 1489564 R identified by glimmer; putative; hypothetical protein complement(1487753..1489564) Coxiella burnetii RSA 331 5794434 YP_001597300.1 CDS COXBURSA331_A1629 NC_010117.1 1490622 1490759 R identified by glimmer; putative; hypothetical protein complement(1490622..1490759) Coxiella burnetii RSA 331 5793907 YP_001597301.1 CDS COXBURSA331_A1630 NC_010117.1 1492805 1493953 D hypothetical protein 1492805..1493953 Coxiella burnetii RSA 331 5794440 YP_001597302.1 CDS COXBURSA331_A1631 NC_010117.1 1494076 1494222 R identified by glimmer; putative; hypothetical protein complement(1494076..1494222) Coxiella burnetii RSA 331 5793256 YP_001597303.1 CDS COXBURSA331_A1637 NC_010117.1 1498352 1498513 R identified by glimmer; putative; hypothetical protein complement(1498352..1498513) Coxiella burnetii RSA 331 5794747 YP_001597304.1 CDS COXBURSA331_A1640 NC_010117.1 1498856 1499008 R identified by glimmer; putative; hypothetical protein complement(1498856..1499008) Coxiella burnetii RSA 331 5792957 YP_001597305.1 CDS hup NC_010117.1 1499056 1499340 R identified by match to protein family HMM PF00216; DNA-binding protein HU complement(1499056..1499340) Coxiella burnetii RSA 331 5793128 YP_001597306.1 CDS COXBURSA331_A1642 NC_010117.1 1499645 1500103 D identified by match to protein family HMM PF01878; hypothetical protein 1499645..1500103 Coxiella burnetii RSA 331 5794417 YP_001597307.1 CDS COXBURSA331_A1644 NC_010117.1 1500108 1500449 D identified by glimmer; putative; hypothetical protein 1500108..1500449 Coxiella burnetii RSA 331 5794412 YP_001597308.1 CDS tldD NC_010117.1 1500426 1501859 R identified by match to protein family HMM PF01523; TldD protein complement(1500426..1501859) Coxiella burnetii RSA 331 5794652 YP_001597309.1 CDS COXBURSA331_A1645 NC_010117.1 1501930 1505391 R identified by match to protein family HMM TIGR02099; hypothetical protein complement(1501930..1505391) Coxiella burnetii RSA 331 5794425 YP_001597310.1 CDS mreD NC_010117.1 1505391 1505879 R identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426; rod shape-determining protein MreD complement(1505391..1505879) Coxiella burnetii RSA 331 5794036 YP_001597311.1 CDS mreC NC_010117.1 1505885 1506763 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(1505885..1506763) Coxiella burnetii RSA 331 5793781 YP_001597312.1 CDS mreB NC_010117.1 1506846 1507904 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(1506846..1507904) Coxiella burnetii RSA 331 5793071 YP_001597313.1 CDS gatC NC_010117.1 1508454 1508753 D identified by match to protein family HMM TIGR00135; glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase subunit C 1508454..1508753 Coxiella burnetii RSA 331 5793757 YP_001597314.1 CDS gatA NC_010117.1 1508757 1510208 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1508757..1510208 Coxiella burnetii RSA 331 5793808 YP_001597315.1 CDS gatB NC_010117.1 1510213 1511646 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1510213..1511646 Coxiella burnetii RSA 331 5794410 YP_001597316.1 CDS COXBURSA331_A1653 NC_010117.1 1511791 1512063 D identified by glimmer; putative; hypothetical protein 1511791..1512063 Coxiella burnetii RSA 331 5793672 YP_001597317.1 CDS COXBURSA331_A1652 NC_010117.1 1512060 1513079 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A complement(1512060..1513079) Coxiella burnetii RSA 331 5792967 YP_001597318.1 CDS oxyR NC_010117.1 1513164 1514099 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; hydrogen peroxide-inducible genes activator complement(1513164..1514099) Coxiella burnetii RSA 331 5793947 YP_001597319.1 CDS ahpC NC_010117.1 1514227 1514766 D identified by match to protein family HMM PF00578; match to protein family HMM PF08534; alkylhydroperoxide reductase AhpC 1514227..1514766 Coxiella burnetii RSA 331 5793070 YP_001597320.1 CDS ahpD NC_010117.1 1514869 1515402 D identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; alkyl hydroperoxide reductase D protein AhpD 1514869..1515402 Coxiella burnetii RSA 331 5794542 YP_001597321.1 CDS COXBURSA331_A1657 NC_010117.1 1515431 1515883 R identified by glimmer; putative; hypothetical protein complement(1515431..1515883) Coxiella burnetii RSA 331 5793855 YP_001597322.1 CDS COXBURSA331_A1660 NC_010117.1 1517032 1517778 R identified by match to protein family HMM PF01145; hypothetical protein complement(1517032..1517778) Coxiella burnetii RSA 331 5794029 YP_001597323.1 CDS COXBURSA331_A1661 NC_010117.1 1517781 1519157 R identified by match to protein family HMM PF01957; nfeD family protein complement(1517781..1519157) Coxiella burnetii RSA 331 5793858 YP_001597324.1 CDS COXBURSA331_A1663 NC_010117.1 1519247 1520533 D identified by match to protein family HMM PF07690; major facilitator family transporter 1519247..1520533 Coxiella burnetii RSA 331 5793780 YP_001597325.1 CDS COXBURSA331_A1665 NC_010117.1 1521304 1521471 D identified by glimmer; putative; hypothetical protein 1521304..1521471 Coxiella burnetii RSA 331 5793290 YP_001597326.1 CDS COXBURSA331_A1664 NC_010117.1 1521422 1521550 R identified by glimmer; putative; hypothetical protein complement(1521422..1521550) Coxiella burnetii RSA 331 5793534 YP_001597327.1 CDS cysS NC_010117.1 1521525 1522901 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(1521525..1522901) Coxiella burnetii RSA 331 5794663 YP_001597328.1 CDS gltX1 NC_010117.1 1522898 1524295 R identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464; glutamyl-tRNA synthetase complement(1522898..1524295) Coxiella burnetii RSA 331 5794033 YP_001597329.1 CDS lpxH NC_010117.1 1524452 1525183 D catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 1524452..1525183 Coxiella burnetii RSA 331 5793937 YP_001597330.1 CDS higA NC_010117.1 1525252 1525557 R identified by match to protein family HMM TIGR02607; addiction module antidote protein complement(1525252..1525557) Coxiella burnetii RSA 331 5793353 YP_001597331.1 CDS COXBURSA331_A1670 NC_010117.1 1525569 1525886 R identified by match to protein family HMM PF05015; plasmid maintenance system killer protein complement(1525569..1525886) Coxiella burnetii RSA 331 5794451 YP_001597332.1 CDS COXBURSA331_A1671 NC_010117.1 1525572 1525724 D identified by glimmer; putative; hypothetical protein 1525572..1525724 Coxiella burnetii RSA 331 5794658 YP_001597333.1 CDS COXBURSA331_A1672 NC_010117.1 1526264 1527409 D identified by match to protein family HMM PF01609; IS4 family transposase 1526264..1527409 Coxiella burnetii RSA 331 5793854 YP_001597334.1 CDS COXBURSA331_A1673 NC_010117.1 1527737 1529410 D identified by glimmer; putative; hypothetical protein 1527737..1529410 Coxiella burnetii RSA 331 5793542 YP_001597335.1 CDS COXBURSA331_A1674 NC_010117.1 1529576 1529815 R identified by glimmer; putative; hypothetical protein complement(1529576..1529815) Coxiella burnetii RSA 331 5792696 YP_001597336.1 CDS COXBURSA331_A1676 NC_010117.1 1529814 1530833 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1529814..1530833 Coxiella burnetii RSA 331 5792912 YP_001597337.1 CDS COXBURSA331_A1675 NC_010117.1 1530830 1531102 R identified by glimmer; putative; hypothetical protein complement(1530830..1531102) Coxiella burnetii RSA 331 5794662 YP_001597338.1 CDS COXBURSA331_A1677 NC_010117.1 1531285 1532295 D identified by glimmer; putative; hypothetical protein 1531285..1532295 Coxiella burnetii RSA 331 5794296 YP_001597339.1 CDS pdxJ NC_010117.1 1532314 1533036 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(1532314..1533036) Coxiella burnetii RSA 331 5794419 YP_001597340.1 CDS COXBURSA331_A1679 NC_010117.1 1533118 1533981 R identified by glimmer; putative; hypothetical protein complement(1533118..1533981) Coxiella burnetii RSA 331 5794666 YP_001597341.1 CDS COXBURSA331_A1680 NC_010117.1 1534004 1535404 R identified by similarity to GB:ABH01782.1; hypothetical protein complement(1534004..1535404) Coxiella burnetii RSA 331 5793011 YP_001597342.1 CDS COXBURSA331_A1681 NC_010117.1 1535482 1535613 R identified by glimmer; putative; hypothetical protein complement(1535482..1535613) Coxiella burnetii RSA 331 5794293 YP_001597343.1 CDS recO NC_010117.1 1536955 1537659 R identified by match to protein family HMM PF02565; match to protein family HMM TIGR00613; DNA repair protein RecO complement(1536955..1537659) Coxiella burnetii RSA 331 5792832 YP_001597344.1 CDS era NC_010117.1 1537656 1538543 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(1537656..1538543) Coxiella burnetii RSA 331 5794418 YP_001597345.1 CDS rnc NC_010117.1 1538540 1539241 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(1538540..1539241) Coxiella burnetii RSA 331 5794580 YP_001597346.1 CDS lepB2 NC_010117.1 1539262 1540032 R identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I complement(1539262..1540032) Coxiella burnetii RSA 331 5794548 YP_001597347.1 CDS lepA NC_010117.1 1540029 1541837 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1540029..1541837) Coxiella burnetii RSA 331 5794426 YP_001597348.1 CDS COXBURSA331_A1689 NC_010117.1 1542009 1542446 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase family protein complement(1542009..1542446) Coxiella burnetii RSA 331 5794030 YP_001597349.1 CDS COXBURSA331_A1690 NC_010117.1 1542463 1544685 R identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase complement(1542463..1544685) Coxiella burnetii RSA 331 5793547 YP_001597350.1 CDS COXBURSA331_A1691 NC_010117.1 1544714 1546345 R hypothetical protein complement(1544714..1546345) Coxiella burnetii RSA 331 5793562 YP_001597351.1 CDS tilS NC_010117.1 1546423 1547772 R identified by match to protein family HMM PF01171; match to protein family HMM PF09179; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; tRNA(Ile)-lysidine synthase complement(1546423..1547772) Coxiella burnetii RSA 331 5793250 YP_001597352.1 CDS accA NC_010117.1 1547748 1548698 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(1547748..1548698) Coxiella burnetii RSA 331 5793936 YP_001597353.1 CDS COXBURSA331_A1695 NC_010117.1 1548847 1549632 D identified by match to protein family HMM PF02535; zinc/iron ABC transporter permease 1548847..1549632 Coxiella burnetii RSA 331 5794642 YP_001597354.1 CDS COXBURSA331_A1694 NC_010117.1 1549629 1550342 R identified by match to protein family HMM PF00581; putative sulfurtransferase complement(1549629..1550342) Coxiella burnetii RSA 331 5793551 YP_001597355.1 CDS COXBURSA331_A1696 NC_010117.1 1550346 1551122 R identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase/reductase family oxidoreductase complement(1550346..1551122) Coxiella burnetii RSA 331 5793948 YP_001597356.1 CDS COXBURSA331_A1698 NC_010117.1 1551937 1552155 D identified by glimmer; putative; hypothetical protein 1551937..1552155 Coxiella burnetii RSA 331 5794760 YP_001597357.1 CDS COXBURSA331_A1699 NC_010117.1 1552319 1552570 D identified by glimmer; putative; hypothetical protein 1552319..1552570 Coxiella burnetii RSA 331 5792781 YP_001597358.1 CDS COXBURSA331_A1700 NC_010117.1 1552859 1553317 D identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185; RNA methyltransferase 1552859..1553317 Coxiella burnetii RSA 331 5793812 YP_001597359.1 CDS gpsA NC_010117.1 1553345 1554343 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(1553345..1554343) Coxiella burnetii RSA 331 5794444 YP_001597360.1 CDS secB NC_010117.1 1554412 1554897 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(1554412..1554897) Coxiella burnetii RSA 331 5794034 YP_001597361.1 CDS grxC NC_010117.1 1554910 1555167 R identified by match to protein family HMM PF00462; match to protein family HMM PF05768; match to protein family HMM TIGR02181; glutaredoxin 3 complement(1554910..1555167) Coxiella burnetii RSA 331 5793141 YP_001597362.1 CDS COXBURSA331_A1704 NC_010117.1 1555172 1555597 R identified by match to protein family HMM PF00581; putative sulfurtransferase complement(1555172..1555597) Coxiella burnetii RSA 331 5793539 YP_001597363.1 CDS COXBURSA331_A1706 NC_010117.1 1557031 1558326 R identified by glimmer; putative; hypothetical protein complement(1557031..1558326) Coxiella burnetii RSA 331 5793860 YP_001597364.1 CDS COXBURSA331_A1707 NC_010117.1 1558380 1560056 R identified by glimmer; putative; hypothetical protein complement(1558380..1560056) Coxiella burnetii RSA 331 5794431 YP_001597365.1 CDS COXBURSA331_A1708 NC_010117.1 1560276 1561658 D identified by glimmer; putative; hypothetical protein 1560276..1561658 Coxiella burnetii RSA 331 5794024 YP_001597366.1 CDS COXBURSA331_A1710 NC_010117.1 1561748 1561864 D identified by glimmer; putative; hypothetical protein 1561748..1561864 Coxiella burnetii RSA 331 5794295 YP_001597367.1 CDS COXBURSA331_A1709 NC_010117.1 1561830 1563740 R identified by match to protein family HMM PF00326; peptidase catalytic subunit complement(1561830..1563740) Coxiella burnetii RSA 331 5793540 YP_001597368.1 CDS COXBURSA331_A1715 NC_010117.1 1565943 1566962 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1565943..1566962 Coxiella burnetii RSA 331 5794023 YP_001597369.1 CDS COXBURSA331_A1714 NC_010117.1 1566959 1567231 R identified by glimmer; putative; hypothetical protein complement(1566959..1567231) Coxiella burnetii RSA 331 5792701 YP_001597370.1 CDS COXBURSA331_A1717 NC_010117.1 1569523 1569732 R identified by glimmer; putative; hypothetical protein complement(1569523..1569732) Coxiella burnetii RSA 331 5793513 YP_001597371.1 CDS COXBURSA331_A1718 NC_010117.1 1569952 1570791 R identified by glimmer; putative; hypothetical protein complement(1569952..1570791) Coxiella burnetii RSA 331 5792722 YP_001597372.1 CDS COXBURSA331_A1719 NC_010117.1 1570865 1570990 R identified by glimmer; putative; hypothetical protein complement(1570865..1570990) Coxiella burnetii RSA 331 5792761 YP_001597373.1 CDS gpmI NC_010117.1 1570956 1572515 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 1570956..1572515 Coxiella burnetii RSA 331 5794793 YP_001597374.1 CDS COXBURSA331_A1721 NC_010117.1 1572651 1573760 D identified by match to protein family HMM PF01551; M23 peptidase domain-containing protein 1572651..1573760 Coxiella burnetii RSA 331 5793402 YP_001597375.1 CDS COXBURSA331_A1722 NC_010117.1 1573757 1575127 D identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; C-terminal processing peptidase 1573757..1575127 Coxiella burnetii RSA 331 5794557 YP_001597376.1 CDS COXBURSA331_A1723 NC_010117.1 1575157 1576431 D identified by match to protein family HMM PF01490; match to protein family HMM PF03222; tryptophan/tyrosine permease family protein 1575157..1576431 Coxiella burnetii RSA 331 5793504 YP_001597377.1 CDS COXBURSA331_A1724 NC_010117.1 1576469 1576732 R identified by glimmer; putative; hypothetical protein complement(1576469..1576732) Coxiella burnetii RSA 331 5793759 YP_001597378.1 CDS COXBURSA331_A1725 NC_010117.1 1576954 1577283 R identified by glimmer; putative; hypothetical protein complement(1576954..1577283) Coxiella burnetii RSA 331 5792786 YP_001597379.1 CDS COXBURSA331_A1726 NC_010117.1 1577328 1577420 D identified by glimmer; putative; hypothetical protein 1577328..1577420 Coxiella burnetii RSA 331 5793274 YP_001597380.1 CDS COXBURSA331_A1727 NC_010117.1 1577598 1578164 R identified by glimmer; putative; hypothetical protein complement(1577598..1578164) Coxiella burnetii RSA 331 5792833 YP_001597381.1 CDS COXBURSA331_A1729 NC_010117.1 1579879 1580040 D identified by glimmer; putative; hypothetical protein 1579879..1580040 Coxiella burnetii RSA 331 5793813 YP_001597382.1 CDS COXBURSA331_A1730 NC_010117.1 1580094 1580228 D identified by glimmer; putative; hypothetical protein 1580094..1580228 Coxiella burnetii RSA 331 5793544 YP_001597383.1 CDS thyA NC_010117.1 1580312 1581106 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(1580312..1581106) Coxiella burnetii RSA 331 5793559 YP_001597384.1 CDS COXBURSA331_A1732 NC_010117.1 1581103 1581477 R identified by glimmer; putative; hypothetical protein complement(1581103..1581477) Coxiella burnetii RSA 331 5793558 YP_001597385.1 CDS lgt NC_010117.1 1581479 1582264 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(1581479..1582264) Coxiella burnetii RSA 331 5793878 YP_001597386.1 CDS ptsP NC_010117.1 1582319 1584598 R identified by match to protein family HMM PF00391; match to protein family HMM PF01590; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase complement(1582319..1584598) Coxiella burnetii RSA 331 5793361 YP_001597387.1 CDS nudH NC_010117.1 1584600 1585109 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(1584600..1585109) Coxiella burnetii RSA 331 5793560 YP_001597388.1 CDS COXBURSA331_A1736 NC_010117.1 1585626 1588451 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1585626..1588451 Coxiella burnetii RSA 331 5793080 YP_001597389.1 CDS COXBURSA331_A1737 NC_010117.1 1588501 1589706 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 1588501..1589706 Coxiella burnetii RSA 331 5793510 YP_001597390.1 CDS COXBURSA331_A1738 NC_010117.1 1589740 1589853 R identified by glimmer; putative; hypothetical protein complement(1589740..1589853) Coxiella burnetii RSA 331 5793756 YP_001597391.1 CDS COXBURSA331_A1740 NC_010117.1 1589887 1590906 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1589887..1590906 Coxiella burnetii RSA 331 5794432 YP_001597392.1 CDS COXBURSA331_A1739 NC_010117.1 1590903 1591175 R identified by glimmer; putative; hypothetical protein complement(1590903..1591175) Coxiella burnetii RSA 331 5794031 YP_001597393.1 CDS COXBURSA331_A1741 NC_010117.1 1591371 1592516 D identified by match to protein family HMM PF01609; IS4 family transposase 1591371..1592516 Coxiella burnetii RSA 331 5793698 YP_001597394.1 CDS COXBURSA331_A1743 NC_010117.1 1592626 1594329 D identified by glimmer; putative; hypothetical protein 1592626..1594329 Coxiella burnetii RSA 331 5793546 YP_001597395.1 CDS COXBURSA331_A1742 NC_010117.1 1592742 1592870 R identified by glimmer; putative; hypothetical protein complement(1592742..1592870) Coxiella burnetii RSA 331 5794421 YP_001597396.1 CDS COXBURSA331_A1744 NC_010117.1 1594519 1594626 D identified by glimmer; putative; hypothetical protein 1594519..1594626 Coxiella burnetii RSA 331 5793736 YP_001597397.1 CDS COXBURSA331_A1745 NC_010117.1 1594717 1594992 D identified by match to protein family HMM TIGR02605; FmdB family regulatory protein 1594717..1594992 Coxiella burnetii RSA 331 5792766 YP_001597398.1 CDS COXBURSA331_A1746 NC_010117.1 1594989 1595618 D identified by match to protein family HMM PF04367; hypothetical protein 1594989..1595618 Coxiella burnetii RSA 331 5793564 YP_001597399.1 CDS COXBURSA331_A1747 NC_010117.1 1595879 1596007 D identified by glimmer; putative; hypothetical protein 1595879..1596007 Coxiella burnetii RSA 331 5794435 YP_001597400.1 CDS COXBURSA331_A1749 NC_010117.1 1596163 1596924 D hypothetical protein 1596163..1596924 Coxiella burnetii RSA 331 5793739 YP_001597401.1 CDS COXBURSA331_A1750 NC_010117.1 1598591 1599466 R identified by glimmer; putative; hypothetical protein complement(1598591..1599466) Coxiella burnetii RSA 331 5794422 YP_001597402.1 CDS aspS NC_010117.1 1599621 1601393 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1599621..1601393 Coxiella burnetii RSA 331 5794766 YP_001597403.1 CDS COXBURSA331_A1752 NC_010117.1 1601409 1602143 D identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 1601409..1602143 Coxiella burnetii RSA 331 5794779 YP_001597404.1 CDS ruvC NC_010117.1 1602259 1602777 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1602259..1602777 Coxiella burnetii RSA 331 5793530 YP_001597405.1 CDS ruvA NC_010117.1 1602774 1603376 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1602774..1603376 Coxiella burnetii RSA 331 5794439 YP_001597406.1 CDS ruvB NC_010117.1 1605237 1606292 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1605237..1606292 Coxiella burnetii RSA 331 5793553 YP_001597407.1 CDS COXBURSA331_A1758 NC_010117.1 1606378 1606650 D identified by glimmer; putative; hypothetical protein 1606378..1606650 Coxiella burnetii RSA 331 5792850 YP_001597408.1 CDS COXBURSA331_A1759 NC_010117.1 1607664 1607816 D identified by glimmer; putative; hypothetical protein 1607664..1607816 Coxiella burnetii RSA 331 5793524 YP_001597409.1 CDS tolQ NC_010117.1 1609165 1609878 D identified by match to protein family HMM PF01618; match to protein family HMM TIGR02796; TolQ protein 1609165..1609878 Coxiella burnetii RSA 331 5793926 YP_001597410.1 CDS tolR NC_010117.1 1609856 1610299 D identified by match to protein family HMM PF02472; match to protein family HMM TIGR02801; protein TolR 1609856..1610299 Coxiella burnetii RSA 331 5793517 YP_001597411.1 CDS COXBURSA331_A1764 NC_010117.1 1610442 1612961 D identified by glimmer; putative; hypothetical protein 1610442..1612961 Coxiella burnetii RSA 331 5793909 YP_001597412.1 CDS COXBURSA331_A1763 NC_010117.1 1612927 1613871 R identified by match to protein family HMM PF01476; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein complement(1612927..1613871) Coxiella burnetii RSA 331 5793788 YP_001597413.1 CDS COXBURSA331_A1765 NC_010117.1 1613874 1614710 R identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; YihY family protein complement(1613874..1614710) Coxiella burnetii RSA 331 5793787 YP_001597414.1 CDS wrbA NC_010117.1 1614821 1615414 D identified by match to protein family HMM PF00258; match to protein family HMM TIGR01755; NAD(P)H:quinone oxidoreductase, type IV 1614821..1615414 Coxiella burnetii RSA 331 5794269 YP_001597415.1 CDS COXBURSA331_A1767 NC_010117.1 1615411 1616508 D identified by match to protein family HMM PF03969; AFG1 family ATPase 1615411..1616508 Coxiella burnetii RSA 331 5792887 YP_001597416.1 CDS COXBURSA331_A1768 NC_010117.1 1616804 1616890 D identified by glimmer; putative; hypothetical protein 1616804..1616890 Coxiella burnetii RSA 331 5794427 YP_001597417.1 CDS mrpG NC_010117.1 1617082 1617462 R identified by match to protein family HMM PF03334; match to protein family HMM TIGR01300; Na(+)/H(+) antiporter subunit G complement(1617082..1617462) Coxiella burnetii RSA 331 5793100 YP_001597418.1 CDS mrpF NC_010117.1 1617455 1617757 R identified by match to protein family HMM PF04066; Na(+)/H(+) antiporter subunit F complement(1617455..1617757) Coxiella burnetii RSA 331 5794413 YP_001597419.1 CDS mrpE NC_010117.1 1617754 1618101 R identified by match to protein family HMM PF01899; Na(+)/H(+) antiporter subunit E complement(1617754..1618101) Coxiella burnetii RSA 331 5793180 YP_001597420.1 CDS mrpD NC_010117.1 1618098 1619597 R identified by match to protein family HMM PF00361; Na(+)/H(+) antiporter subunit D complement(1618098..1619597) Coxiella burnetii RSA 331 5793372 YP_001597421.1 CDS mrpC NC_010117.1 1619594 1619965 R identified by match to protein family HMM PF00420; Na(+)/H(+) antiporter subunit C complement(1619594..1619965) Coxiella burnetii RSA 331 5794443 YP_001597422.1 CDS mrpA NC_010117.1 1620366 1622672 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A complement(1620366..1622672) Coxiella burnetii RSA 331 5794022 YP_001597423.1 CDS COXBURSA331_A1776 NC_010117.1 1622793 1623098 R hypothetical protein complement(1622793..1623098) Coxiella burnetii RSA 331 5794540 YP_001597424.1 CDS nhaP NC_010117.1 1623187 1624440 D identified by match to protein family HMM PF00999; Na(+)/H(+) antiporter NhaP 1623187..1624440 Coxiella burnetii RSA 331 5793954 YP_001597425.1 CDS COXBURSA331_A1779 NC_010117.1 1624573 1624845 D identified by glimmer; putative; hypothetical protein 1624573..1624845 Coxiella burnetii RSA 331 5793479 YP_001597426.1 CDS COXBURSA331_A1778 NC_010117.1 1624842 1625861 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A complement(1624842..1625861) Coxiella burnetii RSA 331 5793751 YP_001597427.1 CDS COXBURSA331_A1780 NC_010117.1 1625860 1626003 D identified by glimmer; putative; hypothetical protein 1625860..1626003 Coxiella burnetii RSA 331 5794145 YP_001597428.1 CDS rpsU NC_010117.1 1626072 1626296 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1626072..1626296 Coxiella burnetii RSA 331 5794102 YP_001597429.1 CDS COXBURSA331_A1782 NC_010117.1 1626324 1626773 D identified by match to protein family HMM PF02637; GatB/YqeY domain-containing protein 1626324..1626773 Coxiella burnetii RSA 331 5793157 YP_001597430.1 CDS dnaG NC_010117.1 1626871 1628532 D identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM PF08278; match to protein family HMM TIGR01391; DNA primase 1626871..1628532 Coxiella burnetii RSA 331 5794225 YP_001597431.1 CDS rpoD NC_010117.1 1628652 1630748 D identified by match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04546; match to protein family HMM TIGR02393; match to protein family HMM TIGR02937; RNA polymerase sigma factor RpoD 1628652..1630748 Coxiella burnetii RSA 331 5794524 YP_001597432.1 CDS COXBURSA331_A1789 NC_010117.1 1633447 1633992 R identified by match to protein family HMM PF02462; opacity family porin protein complement(1633447..1633992) Coxiella burnetii RSA 331 5793165 YP_001597433.1 CDS rimK NC_010117.1 1634805 1635710 D identified by match to protein family HMM PF02655; match to protein family HMM PF08443; match to protein family HMM TIGR00768; ribosomal protein S6 modification protein 1634805..1635710 Coxiella burnetii RSA 331 5794871 YP_001597434.1 CDS COXBURSA331_A1792 NC_010117.1 1635713 1636741 D identified by match to protein family HMM PF04952; succinylglutamate desuccinylase/aspartoacylase family protein 1635713..1636741 Coxiella burnetii RSA 331 5793002 YP_001597435.1 CDS COXBURSA331_A1794 NC_010117.1 1639180 1639365 D identified by glimmer; putative; hypothetical protein 1639180..1639365 Coxiella burnetii RSA 331 5793063 YP_001597436.1 CDS COXBURSA331_A1795 NC_010117.1 1639391 1639789 R identified by glimmer; putative; hypothetical protein complement(1639391..1639789) Coxiella burnetii RSA 331 5793038 YP_001597437.1 CDS COXBURSA331_A1796 NC_010117.1 1640087 1640425 R identified by glimmer; putative; hypothetical protein complement(1640087..1640425) Coxiella burnetii RSA 331 5793988 YP_001597438.1 CDS COXBURSA331_A1797 NC_010117.1 1640449 1641900 R identified by match to protein family HMM PF00023; ankyrin repeat-containing protein complement(1640449..1641900) Coxiella burnetii RSA 331 5793263 YP_001597439.1 CDS COXBURSA331_A1798 NC_010117.1 1642480 1642635 R identified by glimmer; putative; hypothetical protein complement(1642480..1642635) Coxiella burnetii RSA 331 5793485 YP_001597440.1 CDS COXBURSA331_A1799 NC_010117.1 1643184 1643339 R identified by glimmer; putative; hypothetical protein complement(1643184..1643339) Coxiella burnetii RSA 331 5792842 YP_001597441.1 CDS COXBURSA331_A1802 NC_010117.1 1643908 1644510 R identified by glimmer; putative; hypothetical protein complement(1643908..1644510) Coxiella burnetii RSA 331 5794838 YP_001597442.1 CDS COXBURSA331_A1803 NC_010117.1 1644682 1645125 R identified by glimmer; putative; hypothetical protein complement(1644682..1645125) Coxiella burnetii RSA 331 5793798 YP_001597443.1 CDS COXBURSA331_A1804 NC_010117.1 1645828 1646127 D identified by similarity to GB:ABG84151.1; hypothetical protein 1645828..1646127 Coxiella burnetii RSA 331 5794406 YP_001597444.1 CDS COXBURSA331_A1805 NC_010117.1 1646572 1646709 D identified by glimmer; putative; hypothetical protein 1646572..1646709 Coxiella burnetii RSA 331 5794704 YP_001597445.1 CDS icmB NC_010117.1 1646724 1649735 R IcmB protein complement(1646724..1649735) Coxiella burnetii RSA 331 5793405 YP_001597446.1 CDS icmJ NC_010117.1 1649808 1650443 R IcmJ protein complement(1649808..1650443) Coxiella burnetii RSA 331 5794192 YP_001597447.1 CDS icmD NC_010117.1 1650459 1650875 R IcmD protein complement(1650459..1650875) Coxiella burnetii RSA 331 5793740 YP_001597448.1 CDS icmC NC_010117.1 1650970 1651479 R IcmC protein complement(1650970..1651479) Coxiella burnetii RSA 331 5792820 YP_001597449.1 CDS icmG NC_010117.1 1651550 1652284 R IcmG protein complement(1651550..1652284) Coxiella burnetii RSA 331 5794150 YP_001597450.1 CDS icmE NC_010117.1 1652302 1655406 R identified by match to protein family HMM PF00805; match to protein family HMM PF03743; IcmE protein complement(1652302..1655406) Coxiella burnetii RSA 331 5794161 YP_001597451.1 CDS icmK NC_010117.1 1655408 1656445 R IcmK protein complement(1655408..1656445) Coxiella burnetii RSA 331 5794311 YP_001597452.1 CDS icmL1 NC_010117.1 1656474 1657130 R IcmL protein complement(1656474..1657130) Coxiella burnetii RSA 331 5793451 YP_001597453.1 CDS icmL2 NC_010117.1 1657132 1657755 R IcmL protein complement(1657132..1657755) Coxiella burnetii RSA 331 5794359 YP_001597454.1 CDS COXBURSA331_A1815 NC_010117.1 1657762 1658274 R identified by match to protein family HMM PF00691; ompA family protein complement(1657762..1658274) Coxiella burnetii RSA 331 5792746 YP_001597455.1 CDS icmO NC_010117.1 1658410 1660788 R IcmO protein complement(1658410..1660788) Coxiella burnetii RSA 331 5794282 YP_001597456.1 CDS icmP NC_010117.1 1660764 1661927 R IcmP protein complement(1660764..1661927) Coxiella burnetii RSA 331 5792835 YP_001597457.1 CDS icmQ NC_010117.1 1661928 1662644 R identified by match to protein family HMM TIGR02527; IcmQ protein complement(1661928..1662644) Coxiella burnetii RSA 331 5793211 YP_001597458.1 CDS COXBURSA331_A1819 NC_010117.1 1662641 1662790 R identified by glimmer; putative; hypothetical protein complement(1662641..1662790) Coxiella burnetii RSA 331 5793214 YP_001597459.1 CDS COXBURSA331_A1820 NC_010117.1 1662960 1663079 D identified by glimmer; putative; hypothetical protein 1662960..1663079 Coxiella burnetii RSA 331 5794016 YP_001597460.1 CDS COXBURSA331_A1821 NC_010117.1 1663418 1664317 R identified by glimmer; putative; hypothetical protein complement(1663418..1664317) Coxiella burnetii RSA 331 5793235 YP_001597461.1 CDS COXBURSA331_A1822 NC_010117.1 1664444 1664581 D identified by glimmer; putative; hypothetical protein 1664444..1664581 Coxiella burnetii RSA 331 5793170 YP_001597462.1 CDS COXBURSA331_A1823 NC_010117.1 1664678 1665883 R hypothetical protein complement(1664678..1665883) Coxiella burnetii RSA 331 5793931 YP_001597463.1 CDS COXBURSA331_A1824 NC_010117.1 1665995 1667191 R identified by glimmer; putative; hypothetical protein complement(1665995..1667191) Coxiella burnetii RSA 331 5792725 YP_001597464.1 CDS COXBURSA331_A1825 NC_010117.1 1667266 1667412 R identified by glimmer; putative; hypothetical protein complement(1667266..1667412) Coxiella burnetii RSA 331 5793471 YP_001597465.1 CDS COXBURSA331_A1827 NC_010117.1 1667419 1667691 D identified by glimmer; putative; hypothetical protein 1667419..1667691 Coxiella burnetii RSA 331 5794513 YP_001597466.1 CDS COXBURSA331_A1826 NC_010117.1 1667688 1668707 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A complement(1667688..1668707) Coxiella burnetii RSA 331 5793629 YP_001597467.1 CDS COXBURSA331_A1828 NC_010117.1 1668706 1668888 D identified by glimmer; putative; hypothetical protein 1668706..1668888 Coxiella burnetii RSA 331 5794319 YP_001597468.1 CDS icmT NC_010117.1 1668899 1669156 D IcmT protein 1668899..1669156 Coxiella burnetii RSA 331 5793132 YP_001597469.1 CDS icmS NC_010117.1 1669156 1669494 D IcmS protein 1669156..1669494 Coxiella burnetii RSA 331 5792772 YP_001597470.1 CDS dotD NC_010117.1 1669651 1670160 D DotD protein 1669651..1670160 Coxiella burnetii RSA 331 5794212 YP_001597471.1 CDS dotC NC_010117.1 1670163 1670987 D DotC protein 1670163..1670987 Coxiella burnetii RSA 331 5793828 YP_001597472.1 CDS dotB NC_010117.1 1671025 1672143 D identified by match to protein family HMM PF00437; match to protein family HMM TIGR02524; Dot/Icm secretion system ATPase DotB 1671025..1672143 Coxiella burnetii RSA 331 5794364 YP_001597473.1 CDS COXBURSA331_A1834 NC_010117.1 1672150 1673529 D putative transporter 1672150..1673529 Coxiella burnetii RSA 331 5794586 YP_001597474.1 CDS COXBURSA331_A1836 NC_010117.1 1673649 1673921 D identified by glimmer; putative; hypothetical protein 1673649..1673921 Coxiella burnetii RSA 331 5793104 YP_001597475.1 CDS COXBURSA331_A1835 NC_010117.1 1673918 1674937 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A complement(1673918..1674937) Coxiella burnetii RSA 331 5793176 YP_001597476.1 CDS hldE NC_010117.1 1675232 1676659 D catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 1675232..1676659 Coxiella burnetii RSA 331 5794456 YP_001597477.1 CDS COXBURSA331_A1840 NC_010117.1 1677047 1677319 D identified by glimmer; putative; hypothetical protein 1677047..1677319 Coxiella burnetii RSA 331 5793258 YP_001597478.1 CDS COXBURSA331_A1839 NC_010117.1 1677316 1678335 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A complement(1677316..1678335) Coxiella burnetii RSA 331 5794026 YP_001597479.1 CDS COXBURSA331_A1841 NC_010117.1 1678766 1678858 R identified by glimmer; putative; hypothetical protein complement(1678766..1678858) Coxiella burnetii RSA 331 5792916 YP_001597480.1 CDS COXBURSA331_A1842 NC_010117.1 1678940 1680070 R identified by glimmer; putative; hypothetical protein complement(1678940..1680070) Coxiella burnetii RSA 331 5793232 YP_001597481.1 CDS COXBURSA331_A1843 NC_010117.1 1680086 1680544 R identified by glimmer; putative; hypothetical protein complement(1680086..1680544) Coxiella burnetii RSA 331 5794402 YP_001597482.1 CDS icmW NC_010117.1 1680541 1680990 R IcmW protein complement(1680541..1680990) Coxiella burnetii RSA 331 5794374 YP_001597483.1 CDS icmV NC_010117.1 1681219 1681677 D IcmV protein 1681219..1681677 Coxiella burnetii RSA 331 5792742 YP_001597484.1 CDS dotA NC_010117.1 1681694 1684114 D DotA protein 1681694..1684114 Coxiella burnetii RSA 331 5794668 YP_001597485.1 CDS COXBURSA331_A1848 NC_010117.1 1684523 1685542 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1684523..1685542 Coxiella burnetii RSA 331 5792938 YP_001597486.1 CDS COXBURSA331_A1847 NC_010117.1 1685539 1685811 R identified by glimmer; putative; hypothetical protein complement(1685539..1685811) Coxiella burnetii RSA 331 5793408 YP_001597487.1 CDS COXBURSA331_A1849 NC_010117.1 1685935 1686699 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(1685935..1686699) Coxiella burnetii RSA 331 5793651 YP_001597488.1 CDS COXBURSA331_A1850 NC_010117.1 1686740 1687825 R identified by glimmer; putative; hypothetical protein complement(1686740..1687825) Coxiella burnetii RSA 331 5793227 YP_001597489.1 CDS COXBURSA331_A1851 NC_010117.1 1687895 1689184 D identified by match to protein family HMM PF04932; hypothetical protein 1687895..1689184 Coxiella burnetii RSA 331 5792960 YP_001597490.1 CDS COXBURSA331_A1853 NC_010117.1 1689181 1690065 D hypothetical protein 1689181..1690065 Coxiella burnetii RSA 331 5794811 YP_001597491.1 CDS rfaF NC_010117.1 1690050 1691081 R identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195; lipopolysaccharide heptosyltransferase II complement(1690050..1691081) Coxiella burnetii RSA 331 5794202 YP_001597492.1 CDS COXBURSA331_A1854 NC_010117.1 1691085 1691288 R hypothetical protein complement(1691085..1691288) Coxiella burnetii RSA 331 5793650 YP_001597493.1 CDS COXBURSA331_A1855 NC_010117.1 1691352 1691483 R identified by glimmer; putative; hypothetical protein complement(1691352..1691483) Coxiella burnetii RSA 331 5793981 YP_001597494.1 CDS COXBURSA331_A1857 NC_010117.1 1691554 1692147 D identified by match to protein family HMM PF00571; hypothetical protein 1691554..1692147 Coxiella burnetii RSA 331 5794018 YP_001597495.1 CDS COXBURSA331_A1856 NC_010117.1 1692144 1693883 R identified by glimmer; putative; hypothetical protein complement(1692144..1693883) Coxiella burnetii RSA 331 5793133 YP_001597496.1 CDS COXBURSA331_A1858 NC_010117.1 1693923 1694306 R identified by glimmer; putative; hypothetical protein complement(1693923..1694306) Coxiella burnetii RSA 331 5794641 YP_001597497.1 CDS COXBURSA331_A1859 NC_010117.1 1694324 1695205 R identified by glimmer; putative; hypothetical protein complement(1694324..1695205) Coxiella burnetii RSA 331 5793475 YP_001597498.1 CDS COXBURSA331_A1860 NC_010117.1 1695190 1695651 R identified by glimmer; putative; hypothetical protein complement(1695190..1695651) Coxiella burnetii RSA 331 5794003 YP_001597499.1 CDS rpoS NC_010117.1 1695899 1696957 R identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02394; match to protein family HMM TIGR02937; RNA polymerase sigma factor RpoS complement(1695899..1696957) Coxiella burnetii RSA 331 5793796 YP_001597500.1 CDS COXBURSA331_A1862 NC_010117.1 1697037 1697729 R identified by match to protein family HMM PF01476; match to protein family HMM PF01551; putative lipoprotein NlpD complement(1697037..1697729) Coxiella burnetii RSA 331 5794609 YP_001597501.1 CDS surE NC_010117.1 1697731 1698507 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(1697731..1698507) Coxiella burnetii RSA 331 5793688 YP_001597502.1 CDS ftsB NC_010117.1 1698576 1698845 R identified by match to protein family HMM PF04977; cell division protein ftsB complement(1698576..1698845) Coxiella burnetii RSA 331 5793869 YP_001597503.1 CDS eno NC_010117.1 1698852 1700138 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(1698852..1700138) Coxiella burnetii RSA 331 5793179 YP_001597504.1 CDS kdsA NC_010117.1 1700295 1701131 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1700295..1701131) Coxiella burnetii RSA 331 5792898 YP_001597505.1 CDS COXBURSA331_A1868 NC_010117.1 1702604 1703038 R identified by match to protein family HMM PF01814; hemerythrin HHE cation binding domain-containing protein complement(1702604..1703038) Coxiella burnetii RSA 331 5794809 YP_001597506.1 CDS speG NC_010117.1 1703171 1703683 D identified by match to protein family HMM PF00583; diamine N-acetyltransferase 1703171..1703683 Coxiella burnetii RSA 331 5792876 YP_001597507.1 CDS COXBURSA331_A1870 NC_010117.1 1703942 1704250 D identified by similarity to GB:AAM30061.1; hypothetical protein 1703942..1704250 Coxiella burnetii RSA 331 5794320 YP_001597508.1 CDS COXBURSA331_A1871 NC_010117.1 1705269 1705526 R identified by glimmer; putative; hypothetical protein complement(1705269..1705526) Coxiella burnetii RSA 331 5793194 YP_001597509.1 CDS pyrG NC_010117.1 1705606 1707273 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(1705606..1707273) Coxiella burnetii RSA 331 5793990 YP_001597510.1 CDS COXBURSA331_A1873 NC_010117.1 1707308 1707439 R identified by glimmer; putative; hypothetical protein complement(1707308..1707439) Coxiella burnetii RSA 331 5792690 YP_001597511.1 CDS COXBURSA331_A1874 NC_010117.1 1707776 1709197 D identified by glimmer; putative; hypothetical protein 1707776..1709197 Coxiella burnetii RSA 331 5793156 YP_001597512.1 CDS COXBURSA331_A1875 NC_010117.1 1709219 1711540 D identified by glimmer; putative; hypothetical protein 1709219..1711540 Coxiella burnetii RSA 331 5793966 YP_001597513.1 CDS dcd NC_010117.1 1714054 1714620 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(1714054..1714620) Coxiella burnetii RSA 331 5793047 YP_001597514.1 CDS COXBURSA331_A1878 NC_010117.1 1714620 1715540 R NifH/FrxC domain-containing protein complement(1714620..1715540) Coxiella burnetii RSA 331 5792812 YP_001597515.1 CDS COXBURSA331_A1879 NC_010117.1 1715974 1716300 R identified by match to protein family HMM PF01381; DNA-binding protein complement(1715974..1716300) Coxiella burnetii RSA 331 5793131 YP_001597516.1 CDS COXBURSA331_A1880 NC_010117.1 1716293 1716463 R identified by match to protein family HMM PF05973; phage derived protein complement(1716293..1716463) Coxiella burnetii RSA 331 5793199 YP_001597517.1 CDS COXBURSA331_A1881 NC_010117.1 1716658 1718004 R identified by glimmer; putative; hypothetical protein complement(1716658..1718004) Coxiella burnetii RSA 331 5793259 YP_001597518.1 CDS COXBURSA331_A1882 NC_010117.1 1718067 1718426 R identified by glimmer; putative; hypothetical protein complement(1718067..1718426) Coxiella burnetii RSA 331 5794338 YP_001597519.1 CDS metG NC_010117.1 1718645 1720285 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1718645..1720285 Coxiella burnetii RSA 331 5793764 YP_001597520.1 CDS COXBURSA331_A1884 NC_010117.1 1720278 1720919 D identified by match to protein family HMM PF00037; match to protein family HMM PF04060; match to protein family HMM TIGR01944; RnfABCDGE type electron transport complex subunit B 1720278..1720919 Coxiella burnetii RSA 331 5794873 YP_001597521.1 CDS nth NC_010117.1 1720906 1721562 D identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 1720906..1721562 Coxiella burnetii RSA 331 5794055 YP_001597522.1 CDS COXBURSA331_A1885 NC_010117.1 1721537 1722733 R hypothetical protein complement(1721537..1722733) Coxiella burnetii RSA 331 5792738 YP_001597523.1 CDS COXBURSA331_A1887 NC_010117.1 1722800 1724356 R identified by similarity to GB:CAH17132.1; hypothetical protein complement(1722800..1724356) Coxiella burnetii RSA 331 5792885 YP_001597524.1 CDS COXBURSA331_A1889 NC_010117.1 1725179 1726042 D identified by glimmer; putative; hypothetical protein 1725179..1726042 Coxiella burnetii RSA 331 5794125 YP_001597525.1 CDS COXBURSA331_A1890 NC_010117.1 1726117 1726251 R identified by glimmer; putative; hypothetical protein complement(1726117..1726251) Coxiella burnetii RSA 331 5793441 YP_001597526.1 CDS pyrC NC_010117.1 1726340 1727386 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1726340..1727386 Coxiella burnetii RSA 331 5792777 YP_001597527.1 CDS COXBURSA331_A1893 NC_010117.1 1728044 1728388 R identified by glimmer; putative; hypothetical protein complement(1728044..1728388) Coxiella burnetii RSA 331 5793037 YP_001597528.1 CDS COXBURSA331_A1894 NC_010117.1 1728491 1729093 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; anti-oxidant AhpCTSA family protein complement(1728491..1729093) Coxiella burnetii RSA 331 5792989 YP_001597529.1 CDS sodB NC_010117.1 1729310 1729891 D identified by match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase 1729310..1729891 Coxiella burnetii RSA 331 5792745 YP_001597530.1 CDS dapB NC_010117.1 1729893 1730612 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1729893..1730612 Coxiella burnetii RSA 331 5794543 YP_001597531.1 CDS COXBURSA331_A1897 NC_010117.1 1730615 1731052 D identified by glimmer; putative; hypothetical protein 1730615..1731052 Coxiella burnetii RSA 331 5793388 YP_001597532.1 CDS COXBURSA331_A1898 NC_010117.1 1731211 1731399 D identified by glimmer; putative; hypothetical protein 1731211..1731399 Coxiella burnetii RSA 331 5793107 YP_001597533.1 CDS COXBURSA331_A1899 NC_010117.1 1731416 1731706 D identified by match to protein family HMM PF01541; GIY-YIG catalytic domain-containing protein 1731416..1731706 Coxiella burnetii RSA 331 5793826 YP_001597534.1 CDS COXBURSA331_A1901 NC_010117.1 1731687 1731905 D identified by glimmer; putative; hypothetical protein 1731687..1731905 Coxiella burnetii RSA 331 5794063 YP_001597535.1 CDS gcvPB NC_010117.1 1731803 1733278 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 complement(1731803..1733278) Coxiella burnetii RSA 331 5793161 YP_001597536.1 CDS gcvPA NC_010117.1 1733346 1734686 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 complement(1733346..1734686) Coxiella burnetii RSA 331 5792788 YP_001597537.1 CDS gcvH NC_010117.1 1734689 1735081 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(1734689..1735081) Coxiella burnetii RSA 331 5794362 YP_001597538.1 CDS gcvT NC_010117.1 1735092 1736243 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(1735092..1736243) Coxiella burnetii RSA 331 5794064 YP_001597539.1 CDS COXBURSA331_A1905 NC_010117.1 1737348 1737620 R identified by glimmer; putative; hypothetical protein complement(1737348..1737620) Coxiella burnetii RSA 331 5793411 YP_001597540.1 CDS COXBURSA331_A1907 NC_010117.1 1737656 1737736 R identified by glimmer; putative; hypothetical protein complement(1737656..1737736) Coxiella burnetii RSA 331 5794084 YP_001597541.1 CDS groEL NC_010117.1 1737740 1739398 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(1737740..1739398) Coxiella burnetii RSA 331 5794230 YP_001597542.1 CDS groES NC_010117.1 1739426 1739716 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(1739426..1739716) Coxiella burnetii RSA 331 5793118 YP_001597543.1 CDS acnA NC_010117.1 1739918 1742590 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1739918..1742590 Coxiella burnetii RSA 331 5794516 YP_001597544.1 CDS COXBURSA331_A1911 NC_010117.1 1742601 1743311 D hypothetical protein 1742601..1743311 Coxiella burnetii RSA 331 5793082 YP_001597545.1 CDS COXBURSA331_A1912 NC_010117.1 1743327 1745126 R identified by match to protein family HMM PF00441; match to protein family HMM PF00501; AMP-binding domain-containing protein complement(1743327..1745126) Coxiella burnetii RSA 331 5793913 YP_001597546.1 CDS dsbD NC_010117.1 1745208 1746677 D identified by match to protein family HMM PF00085; thiol:disulfide interchange protein DsbD 1745208..1746677 Coxiella burnetii RSA 331 5793219 YP_001597547.1 CDS COXBURSA331_A1916 NC_010117.1 1749361 1749492 R identified by glimmer; putative; hypothetical protein complement(1749361..1749492) Coxiella burnetii RSA 331 5794275 YP_001597548.1 CDS accB NC_010117.1 1749520 1749984 D identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1749520..1749984 Coxiella burnetii RSA 331 5792933 YP_001597549.1 CDS accC NC_010117.1 1749991 1751337 D identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514; acetyl-CoA carboxylase, biotin carboxylase 1749991..1751337 Coxiella burnetii RSA 331 5792765 YP_001597550.1 CDS arcB NC_010117.1 1751389 1752399 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(1751389..1752399) Coxiella burnetii RSA 331 5792963 YP_001597551.1 CDS COXBURSA331_A1920 NC_010117.1 1752392 1753009 R identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528; nicotinamide mononucleotide transporter family protein complement(1752392..1753009) Coxiella burnetii RSA 331 5794127 YP_001597552.1 CDS hemF NC_010117.1 1753044 1753976 R catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase complement(1753044..1753976) Coxiella burnetii RSA 331 5793396 YP_001597553.1 CDS COXBURSA331_A1922 NC_010117.1 1754084 1754851 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; HAD family hydrolase complement(1754084..1754851) Coxiella burnetii RSA 331 5794390 YP_001597554.1 CDS COXBURSA331_A1924 NC_010117.1 1756280 1757446 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase family protein 1756280..1757446 Coxiella burnetii RSA 331 5794242 YP_001597555.1 CDS hda NC_010117.1 1759590 1760303 R identified by match to protein family HMM PF00308; match to protein family HMM TIGR03420; DnaA-like protein Hda complement(1759590..1760303) Coxiella burnetii RSA 331 5793669 YP_001597556.1 CDS COXBURSA331_A1927 NC_010117.1 1760306 1761430 R hypothetical protein complement(1760306..1761430) Coxiella burnetii RSA 331 5794193 YP_001597557.1 CDS purM NC_010117.1 1761512 1762570 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1761512..1762570 Coxiella burnetii RSA 331 5793030 YP_001597558.1 CDS purN NC_010117.1 1762567 1763214 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 1762567..1763214 Coxiella burnetii RSA 331 5793356 YP_001597559.1 CDS ihfB NC_010117.1 1763300 1763638 D identified by match to protein family HMM PF00216; match to protein family HMM TIGR00988; integration host factor subunit beta 1763300..1763638 Coxiella burnetii RSA 331 5794237 YP_001597560.1 CDS COXBURSA331_A1930 NC_010117.1 1763604 1764461 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein complement(1763604..1764461) Coxiella burnetii RSA 331 5793648 YP_001597561.1 CDS COXBURSA331_A1932 NC_010117.1 1764512 1764655 R identified by glimmer; putative; hypothetical protein complement(1764512..1764655) Coxiella burnetii RSA 331 5793895 YP_001597562.1 CDS COXBURSA331_A1933 NC_010117.1 1764730 1765914 D putative lipoprotein 1764730..1765914 Coxiella burnetii RSA 331 5794182 YP_001597563.1 CDS COXBURSA331_A1934 NC_010117.1 1765964 1766326 D identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 1765964..1766326 Coxiella burnetii RSA 331 5794495 YP_001597564.1 CDS gmhA NC_010117.1 1766332 1766931 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 1766332..1766931 Coxiella burnetii RSA 331 5793627 YP_001597565.1 CDS COXBURSA331_A1936 NC_010117.1 1766931 1767506 D identified by match to protein family HMM PF04972; putative phospholipid-binding liporotein 1766931..1767506 Coxiella burnetii RSA 331 5793010 YP_001597566.1 CDS COXBURSA331_A1937 NC_010117.1 1767916 1768608 R identified by match to protein family HMM PF02163; peptidase, M50 family protein complement(1767916..1768608) Coxiella burnetii RSA 331 5794268 YP_001597567.1 CDS sspB NC_010117.1 1768696 1769112 R identified by match to protein family HMM PF04386; ClpXP protease specificity-enhancing factor complement(1768696..1769112) Coxiella burnetii RSA 331 5792814 YP_001597568.1 CDS sspA NC_010117.1 1769102 1769731 R identified by match to protein family HMM PF02798; stringent starvation protein A complement(1769102..1769731) Coxiella burnetii RSA 331 5793282 YP_001597569.1 CDS rpsI NC_010117.1 1769795 1770214 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(1769795..1770214) Coxiella burnetii RSA 331 5792830 YP_001597570.1 CDS rplM NC_010117.1 1770233 1770661 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(1770233..1770661) Coxiella burnetii RSA 331 5793294 YP_001597571.1 CDS COXBURSA331_A1942 NC_010117.1 1770660 1770809 D identified by glimmer; putative; hypothetical protein 1770660..1770809 Coxiella burnetii RSA 331 5794208 YP_001597572.1 CDS bph2_2 NC_010117.1 1770891 1771340 D identified by match to protein family HMM PF00216; DNA-binding protein BpH2 1770891..1771340 Coxiella burnetii RSA 331 5792932 YP_001597573.1 CDS COXBURSA331_A1944 NC_010117.1 1771448 1772710 D identified by glimmer; putative; hypothetical protein 1771448..1772710 Coxiella burnetii RSA 331 5794375 YP_001597574.1 CDS COXBURSA331_A1945 NC_010117.1 1772746 1773984 D identified by glimmer; putative; hypothetical protein 1772746..1773984 Coxiella burnetii RSA 331 5793289 YP_001597575.1 CDS COXBURSA331_A1946 NC_010117.1 1774058 1774474 D hypothetical protein 1774058..1774474 Coxiella burnetii RSA 331 5793453 YP_001597576.1 CDS COXBURSA331_A1947 NC_010117.1 1774496 1775092 R identified by glimmer; putative; hypothetical protein complement(1774496..1775092) Coxiella burnetii RSA 331 5792838 YP_001597577.1 CDS COXBURSA331_A1948 NC_010117.1 1775274 1776455 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; Bcr/CflA subfamily drug resistance transporter 1775274..1776455 Coxiella burnetii RSA 331 5794249 YP_001597578.1 CDS COXBURSA331_A1949 NC_010117.1 1776470 1778305 R identified by match to protein family HMM PF00023; ankyrin repeat-containing protein complement(1776470..1778305) Coxiella burnetii RSA 331 5794166 YP_001597579.1 CDS COXBURSA331_A1950 NC_010117.1 1778403 1779023 R identified by glimmer; putative; hypothetical protein complement(1778403..1779023) Coxiella burnetii RSA 331 5793269 YP_001597580.1 CDS COXBURSA331_A1951 NC_010117.1 1779063 1779191 R identified by glimmer; putative; hypothetical protein complement(1779063..1779191) Coxiella burnetii RSA 331 5794813 YP_001597581.1 CDS COXBURSA331_A1952 NC_010117.1 1779190 1780209 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1779190..1780209 Coxiella burnetii RSA 331 5793702 YP_001597582.1 CDS COXBURSA331_A1953 NC_010117.1 1780235 1780477 R identified by glimmer; putative; hypothetical protein complement(1780235..1780477) Coxiella burnetii RSA 331 5794019 YP_001597583.1 CDS COXBURSA331_A1954 NC_010117.1 1780803 1782776 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229; PAS/histidine kinase/ATPase domain-containing protein complement(1780803..1782776) Coxiella burnetii RSA 331 5793662 YP_001597584.1 CDS COXBURSA331_A1955 NC_010117.1 1782830 1784212 R identified by glimmer; putative; hypothetical protein complement(1782830..1784212) Coxiella burnetii RSA 331 5793950 YP_001597585.1 CDS COXBURSA331_A1956 NC_010117.1 1784376 1785704 D hypothetical protein 1784376..1785704 Coxiella burnetii RSA 331 5794788 YP_001597586.1 CDS COXBURSA331_A1957 NC_010117.1 1786105 1786269 R identified by glimmer; putative; hypothetical protein complement(1786105..1786269) Coxiella burnetii RSA 331 5793078 YP_001597587.1 CDS COXBURSA331_A1958 NC_010117.1 1786316 1786534 R hypothetical protein complement(1786316..1786534) Coxiella burnetii RSA 331 5793741 YP_001597588.1 CDS feoB NC_010117.1 1786534 1788984 R identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B complement(1786534..1788984) Coxiella burnetii RSA 331 5794347 YP_001597589.1 CDS feoA NC_010117.1 1788985 1789221 R identified by match to protein family HMM PF04023; ferrous iron transport protein A complement(1788985..1789221) Coxiella burnetii RSA 331 5793599 YP_001597590.1 CDS COXBURSA331_A1961 NC_010117.1 1789316 1789597 R identified by glimmer; putative; hypothetical protein complement(1789316..1789597) Coxiella burnetii RSA 331 5793359 YP_001597591.1 CDS COXBURSA331_A1962 NC_010117.1 1789844 1790461 R hypothetical protein complement(1789844..1790461) Coxiella burnetii RSA 331 5794853 YP_001597592.1 CDS COXBURSA331_A1964 NC_010117.1 1790566 1790838 D identified by glimmer; putative; hypothetical protein 1790566..1790838 Coxiella burnetii RSA 331 5793729 YP_001597593.1 CDS COXBURSA331_A1963 NC_010117.1 1790835 1791854 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A complement(1790835..1791854) Coxiella burnetii RSA 331 5793093 YP_001597594.1 CDS COXBURSA331_A1966 NC_010117.1 1791853 1791975 D identified by glimmer; putative; hypothetical protein 1791853..1791975 Coxiella burnetii RSA 331 5794154 YP_001597595.1 CDS COXBURSA331_A1965 NC_010117.1 1791939 1793243 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1791939..1793243) Coxiella burnetii RSA 331 5792919 YP_001597596.1 CDS COXBURSA331_A1967 NC_010117.1 1793353 1795098 R identified by match to protein family HMM PF00528; ABC transporter permease complement(1793353..1795098) Coxiella burnetii RSA 331 5793084 YP_001597597.1 CDS engB NC_010117.1 1795333 1795950 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1795333..1795950) Coxiella burnetii RSA 331 5793091 YP_001597598.1 CDS COXBURSA331_A1969 NC_010117.1 1796092 1796223 D identified by glimmer; putative; hypothetical protein 1796092..1796223 Coxiella burnetii RSA 331 5793175 YP_001597599.1 CDS COXBURSA331_A1970 NC_010117.1 1796220 1796603 D identified by match to protein family HMM PF08238; Sel1 repeat-containing protein 1796220..1796603 Coxiella burnetii RSA 331 5794507 YP_001597600.1 CDS COXBURSA331_A1971 NC_010117.1 1796774 1797094 D identified by glimmer; putative; hypothetical protein 1796774..1797094 Coxiella burnetii RSA 331 5794008 YP_001597601.1 CDS COXBURSA331_A1973 NC_010117.1 1797706 1797891 R identified by glimmer; putative; hypothetical protein complement(1797706..1797891) Coxiella burnetii RSA 331 5793979 YP_001597602.1 CDS fba NC_010117.1 1797951 1799042 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(1797951..1799042) Coxiella burnetii RSA 331 5794527 YP_001597603.1 CDS COXBURSA331_A1976 NC_010117.1 1799212 1800231 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1799212..1800231 Coxiella burnetii RSA 331 5794050 YP_001597604.1 CDS COXBURSA331_A1975 NC_010117.1 1800228 1800500 R identified by glimmer; putative; hypothetical protein complement(1800228..1800500) Coxiella burnetii RSA 331 5793694 YP_001597605.1 CDS COXBURSA331_A1977 NC_010117.1 1800791 1801828 D identified by similarity to RF:XP_001242764.1; hypothetical protein 1800791..1801828 Coxiella burnetii RSA 331 5793417 YP_001597606.1 CDS pyk NC_010117.1 1802245 1803699 R identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase complement(1802245..1803699) Coxiella burnetii RSA 331 5793399 YP_001597607.1 CDS pgk NC_010117.1 1803686 1804885 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(1803686..1804885) Coxiella burnetii RSA 331 5793178 YP_001597608.1 CDS gap NC_010117.1 1804972 1805976 R identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase, type I complement(1804972..1805976) Coxiella burnetii RSA 331 5793168 YP_001597609.1 CDS tkt NC_010117.1 1805991 1807985 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(1805991..1807985) Coxiella burnetii RSA 331 5793183 YP_001597610.1 CDS COXBURSA331_A1983 NC_010117.1 1808208 1809227 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1808208..1809227 Coxiella burnetii RSA 331 5794842 YP_001597611.1 CDS COXBURSA331_A1982 NC_010117.1 1809224 1809496 R identified by glimmer; putative; hypothetical protein complement(1809224..1809496) Coxiella burnetii RSA 331 5792768 YP_001597612.1 CDS COXBURSA331_A1984 NC_010117.1 1809569 1810702 R hypothetical protein complement(1809569..1810702) Coxiella burnetii RSA 331 5793364 YP_001597613.1 CDS glmS NC_010117.1 1810808 1812643 D identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135; glutamine-fructose-6-phosphate transaminase (isomerizing) 1810808..1812643 Coxiella burnetii RSA 331 5794308 YP_001597614.1 CDS COXBURSA331_A1986 NC_010117.1 1812646 1813230 D hypothetical protein 1812646..1813230 Coxiella burnetii RSA 331 5793770 YP_001597615.1 CDS COXBURSA331_A1987 NC_010117.1 1813619 1814485 R identified by match to protein family HMM PF08450; SMP-30/CGR1 family protein complement(1813619..1814485) Coxiella burnetii RSA 331 5793528 YP_001597616.1 CDS COXBURSA331_A1990 NC_010117.1 1817763 1817879 D identified by glimmer; putative; hypothetical protein 1817763..1817879 Coxiella burnetii RSA 331 5793846 YP_001597617.1 CDS COXBURSA331_A1991 NC_010117.1 1817966 1818703 D identified by glimmer; putative; hypothetical protein 1817966..1818703 Coxiella burnetii RSA 331 5792790 YP_001597618.1 CDS polA NC_010117.1 1818733 1821441 R identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I complement(1818733..1821441) Coxiella burnetii RSA 331 5793610 YP_001597619.1 CDS COXBURSA331_A1993 NC_010117.1 1821492 1823120 D identified by match to protein family HMM PF00324; amino acid permease family protein 1821492..1823120 Coxiella burnetii RSA 331 5793896 YP_001597620.1 CDS COXBURSA331_A1994 NC_010117.1 1823125 1823565 D identified by match to protein family HMM PF03061; thioesterase family protein 1823125..1823565 Coxiella burnetii RSA 331 5793448 YP_001597621.1 CDS COXBURSA331_A1995 NC_010117.1 1823694 1825637 D hypothetical protein 1823694..1825637 Coxiella burnetii RSA 331 5792934 YP_001597622.1 CDS COXBURSA331_A1997 NC_010117.1 1825710 1826168 D identified by glimmer; putative; hypothetical protein 1825710..1826168 Coxiella burnetii RSA 331 5794655 YP_001597623.1 CDS COXBURSA331_A1996 NC_010117.1 1826019 1826480 R identified by match to protein family HMM PF00583; acetyltransferase complement(1826019..1826480) Coxiella burnetii RSA 331 5793340 YP_001597624.1 CDS COXBURSA331_A1998 NC_010117.1 1826477 1827235 R identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein complement(1826477..1827235) Coxiella burnetii RSA 331 5793000 YP_001597625.1 CDS COXBURSA331_A1999 NC_010117.1 1827244 1827531 R identified by glimmer; putative; hypothetical protein complement(1827244..1827531) Coxiella burnetii RSA 331 5793328 YP_001597626.1 CDS COXBURSA331_A2000 NC_010117.1 1827564 1828202 R identified by glimmer; putative; hypothetical protein complement(1827564..1828202) Coxiella burnetii RSA 331 5792723 YP_001597627.1 CDS COXBURSA331_A2001 NC_010117.1 1828401 1828520 D identified by glimmer; putative; hypothetical protein 1828401..1828520 Coxiella burnetii RSA 331 5794847 YP_001597628.1 CDS COXBURSA331_A2002 NC_010117.1 1828539 1828793 D identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 1828539..1828793 Coxiella burnetii RSA 331 5793996 YP_001597629.1 CDS COXBURSA331_A2003 NC_010117.1 1828807 1829190 D identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 1828807..1829190 Coxiella burnetii RSA 331 5793889 YP_001597630.1 CDS COXBURSA331_A2004 NC_010117.1 1829266 1829553 R hypothetical protein complement(1829266..1829553) Coxiella burnetii RSA 331 5794790 YP_001597631.1 CDS COXBURSA331_A2005 NC_010117.1 1829905 1830141 D identified by glimmer; putative; hypothetical protein 1829905..1830141 Coxiella burnetii RSA 331 5793733 YP_001597632.1 CDS COXBURSA331_A2006 NC_010117.1 1830260 1830469 R identified by glimmer; putative; hypothetical protein complement(1830260..1830469) Coxiella burnetii RSA 331 5794152 YP_001597633.1 CDS COXBURSA331_A2009 NC_010117.1 1832536 1833711 R ABC transporter substrate-binding protein complement(1832536..1833711) Coxiella burnetii RSA 331 5794199 YP_001597634.1 CDS COXBURSA331_A2010 NC_010117.1 1833714 1835243 R identified by match to protein family HMM PF02321; outer membrane efflux family protein complement(1833714..1835243) Coxiella burnetii RSA 331 5794803 YP_001597635.1 CDS pdxB NC_010117.1 1835337 1836437 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; erythronate-4-phosphate dehydrogenase 1835337..1836437 Coxiella burnetii RSA 331 5792806 YP_001597636.1 CDS COXBURSA331_A2012 NC_010117.1 1836418 1836546 D identified by glimmer; putative; hypothetical protein 1836418..1836546 Coxiella burnetii RSA 331 5794109 YP_001597637.1 CDS COXBURSA331_A2013 NC_010117.1 1836583 1837296 D hypothetical protein 1836583..1837296 Coxiella burnetii RSA 331 5793912 YP_001597638.1 CDS priA NC_010117.1 1837444 1839432 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00595; primosomal protein N' complement(1837444..1839432) Coxiella burnetii RSA 331 5793064 YP_001597639.1 CDS efp NC_010117.1 1839504 1840070 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1839504..1840070 Coxiella burnetii RSA 331 5793838 YP_001597640.1 CDS COXBURSA331_A2016 NC_010117.1 1840075 1841040 D identified by match to protein family HMM PF00152; match to protein family HMM TIGR00462; lysyl-tRNA synthetase-like protein GenX 1840075..1841040 Coxiella burnetii RSA 331 5793989 YP_001597641.1 CDS COXBURSA331_A2017 NC_010117.1 1841564 1842703 D identified by glimmer; putative; hypothetical protein 1841564..1842703 Coxiella burnetii RSA 331 5793959 YP_001597642.1 CDS COXBURSA331_A2018 NC_010117.1 1842771 1843889 D identified by glimmer; putative; hypothetical protein 1842771..1843889 Coxiella burnetii RSA 331 5794393 YP_001597643.1 CDS COXBURSA331_A2020 NC_010117.1 1844433 1844930 R identified by glimmer; putative; hypothetical protein complement(1844433..1844930) Coxiella burnetii RSA 331 5793835 YP_001597644.1 CDS COXBURSA331_A2021 NC_010117.1 1844914 1845039 R identified by glimmer; putative; hypothetical protein complement(1844914..1845039) Coxiella burnetii RSA 331 5794886 YP_001597645.1 CDS sodC NC_010117.1 1845046 1845558 R identified by match to protein family HMM PF00080; superoxide dismutase (Cu-Zn) complement(1845046..1845558) Coxiella burnetii RSA 331 5794262 YP_001597646.1 CDS COXBURSA331_A2023 NC_010117.1 1845696 1846745 D identified by glimmer; putative; hypothetical protein 1845696..1846745 Coxiella burnetii RSA 331 5794075 YP_001597647.1 CDS COXBURSA331_A2024 NC_010117.1 1847047 1847394 D identified by glimmer; putative; hypothetical protein 1847047..1847394 Coxiella burnetii RSA 331 5794228 YP_001597648.1 CDS psd NC_010117.1 1847399 1848247 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase complement(1847399..1848247) Coxiella burnetii RSA 331 5792994 YP_001597649.1 CDS cca NC_010117.1 1848269 1849399 D identified by match to protein family HMM PF01743; multifunctional CCA protein 1848269..1849399 Coxiella burnetii RSA 331 5792801 YP_001597650.1 CDS COXBURSA331_A2027 NC_010117.1 1849433 1850599 R identified by match to protein family HMM PF02636; hypothetical protein complement(1849433..1850599) Coxiella burnetii RSA 331 5793777 YP_001597651.1 CDS lolB NC_010117.1 1850693 1851325 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1850693..1851325 Coxiella burnetii RSA 331 5793067 YP_001597652.1 CDS COXBURSA331_A2029 NC_010117.1 1851395 1851532 R identified by similarity to GB:ABE04226.1; hypothetical protein complement(1851395..1851532) Coxiella burnetii RSA 331 5794354 YP_001597653.1 CDS prs NC_010117.1 1851500 1852459 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1851500..1852459 Coxiella burnetii RSA 331 5794353 YP_001597654.1 CDS COXBURSA331_A2032 NC_010117.1 1852464 1853912 D identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase family protein 1852464..1853912 Coxiella burnetii RSA 331 5794711 YP_001597655.1 CDS COXBURSA331_A2031 NC_010117.1 1853790 1855181 R hypothetical protein complement(1853790..1855181) Coxiella burnetii RSA 331 5794280 YP_001597656.1 CDS COXBURSA331_A2033 NC_010117.1 1855196 1855312 R identified by glimmer; putative; hypothetical protein complement(1855196..1855312) Coxiella burnetii RSA 331 5794083 YP_001597657.1 CDS rfbA NC_010117.1 1855284 1856198 D identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase 1855284..1856198 Coxiella burnetii RSA 331 5793961 YP_001597658.1 CDS COXBURSA331_A2034 NC_010117.1 1856195 1856332 R identified by glimmer; putative; hypothetical protein complement(1856195..1856332) Coxiella burnetii RSA 331 5793137 YP_001597659.1 CDS COXBURSA331_A2036 NC_010117.1 1856544 1857923 R identified by match to protein family HMM PF01266; match to protein family HMM PF01593; amine oxidase, flavin-containing complement(1856544..1857923) Coxiella burnetii RSA 331 5792903 YP_001597660.1 CDS COXBURSA331_A2037 NC_010117.1 1857925 1859181 R identified by match to protein family HMM PF03447; homoserine dehydrogenase complement(1857925..1859181) Coxiella burnetii RSA 331 5793277 YP_001597661.1 CDS COXBURSA331_A2038 NC_010117.1 1859195 1860229 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase family protein complement(1859195..1860229) Coxiella burnetii RSA 331 5792914 YP_001597662.1 CDS rfbC NC_010117.1 1860232 1860801 R identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase complement(1860232..1860801) Coxiella burnetii RSA 331 5793722 YP_001597663.1 CDS COXBURSA331_A2040 NC_010117.1 1860811 1862037 R identified by match to protein family HMM PF01266; FAD-dependent oxidoreductase complement(1860811..1862037) Coxiella burnetii RSA 331 5793213 YP_001597664.1 CDS COXBURSA331_A2041 NC_010117.1 1862187 1862921 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1862187..1862921 Coxiella burnetii RSA 331 5793144 YP_001597665.1 CDS pth NC_010117.1 1862928 1863491 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1862928..1863491 Coxiella burnetii RSA 331 5794096 YP_001597666.1 CDS ychF NC_010117.1 1863536 1864627 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1863536..1864627 Coxiella burnetii RSA 331 5794384 YP_001597667.1 CDS COXBURSA331_A2044 NC_010117.1 1864652 1865035 D identified by glimmer; putative; hypothetical protein 1864652..1865035 Coxiella burnetii RSA 331 5794522 YP_001597668.1 CDS COXBURSA331_A2047 NC_010117.1 1865834 1866445 D identified by glimmer; putative; hypothetical protein 1865834..1866445 Coxiella burnetii RSA 331 5792918 YP_001597669.1 CDS COXBURSA331_A2048 NC_010117.1 1866558 1867091 R hypothetical protein complement(1866558..1867091) Coxiella burnetii RSA 331 5793590 YP_001597670.1 CDS COXBURSA331_A2049 NC_010117.1 1867141 1867386 R identified by glimmer; putative; hypothetical protein complement(1867141..1867386) Coxiella burnetii RSA 331 5792744 YP_001597671.1 CDS COXBURSA331_A2051 NC_010117.1 1869237 1869365 D identified by glimmer; putative; hypothetical protein 1869237..1869365 Coxiella burnetii RSA 331 5794256 YP_001597672.1 CDS COXBURSA331_A2053 NC_010117.1 1869728 1869856 R identified by glimmer; putative; hypothetical protein complement(1869728..1869856) Coxiella burnetii RSA 331 5794483 YP_001597673.1 CDS COXBURSA331_A2054 NC_010117.1 1869910 1870374 R hypothetical protein complement(1869910..1870374) Coxiella burnetii RSA 331 5793237 YP_001597674.1 CDS COXBURSA331_A2055 NC_010117.1 1870610 1872406 D hypothetical protein 1870610..1872406 Coxiella burnetii RSA 331 5794357 YP_001597675.1 CDS COXBURSA331_A2057 NC_010117.1 1872399 1873793 D hypothetical protein 1872399..1873793 Coxiella burnetii RSA 331 5794366 YP_001597676.1 CDS COXBURSA331_A2056 NC_010117.1 1873771 1874220 R identified by match to protein family HMM PF04138; GtrA family protein complement(1873771..1874220) Coxiella burnetii RSA 331 5794894 YP_001597677.1 CDS COXBURSA331_A2058 NC_010117.1 1874303 1874581 R identified by glimmer; putative; hypothetical protein complement(1874303..1874581) Coxiella burnetii RSA 331 5793864 YP_001597678.1 CDS COXBURSA331_A2059 NC_010117.1 1875003 1875344 R hypothetical protein complement(1875003..1875344) Coxiella burnetii RSA 331 5793972 YP_001597679.1 CDS COXBURSA331_A2060 NC_010117.1 1875377 1876447 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein complement(1875377..1876447) Coxiella burnetii RSA 331 5793205 YP_001597680.1 CDS COXBURSA331_A2062 NC_010117.1 1878252 1879649 R identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease complement(1878252..1879649) Coxiella burnetii RSA 331 5792937 YP_001597681.1 CDS COXBURSA331_A2063 NC_010117.1 1879660 1880670 R identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease complement(1879660..1880670) Coxiella burnetii RSA 331 5793020 YP_001597682.1 CDS COXBURSA331_A2067 NC_010117.1 1882962 1883990 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238; KamA family protein 1882962..1883990 Coxiella burnetii RSA 331 5794078 YP_001597683.1 CDS COXBURSA331_A2066 NC_010117.1 1883980 1885791 R identified by glimmer; putative; hypothetical protein complement(1883980..1885791) Coxiella burnetii RSA 331 5793904 YP_001597684.1 CDS COXBURSA331_A2068 NC_010117.1 1886170 1886697 R identified by match to protein family HMM PF03703; hypothetical protein complement(1886170..1886697) Coxiella burnetii RSA 331 5792902 YP_001597685.1 CDS parC NC_010117.1 1886715 1888970 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(1886715..1888970) Coxiella burnetii RSA 331 5793261 YP_001597686.1 CDS COXBURSA331_A2070 NC_010117.1 1889089 1889202 D identified by glimmer; putative; hypothetical protein 1889089..1889202 Coxiella burnetii RSA 331 5794363 YP_001597687.1 CDS COXBURSA331_A2072 NC_010117.1 1889549 1890202 D identified by glimmer; putative; hypothetical protein 1889549..1890202 Coxiella burnetii RSA 331 5793490 YP_001597688.1 CDS COXBURSA331_A2071 NC_010117.1 1890195 1890320 R identified by glimmer; putative; hypothetical protein complement(1890195..1890320) Coxiella burnetii RSA 331 5793124 YP_001597689.1 CDS COXBURSA331_A2073 NC_010117.1 1890489 1891136 D hypothetical protein 1890489..1891136 Coxiella burnetii RSA 331 5793420 YP_001597690.1 CDS rpe NC_010117.1 1891672 1892340 R identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase complement(1891672..1892340) Coxiella burnetii RSA 331 5793861 YP_001597691.1 CDS djlA NC_010117.1 1892367 1893179 R functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein complement(1892367..1893179) Coxiella burnetii RSA 331 5793917 YP_001597692.1 CDS gshA NC_010117.1 1893218 1894525 D identified by match to protein family HMM PF08886; match to protein family HMM TIGR02049; glutamate--cysteine ligase 1893218..1894525 Coxiella burnetii RSA 331 5794823 YP_001597693.1 CDS gshB NC_010117.1 1894579 1895544 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 1894579..1895544 Coxiella burnetii RSA 331 5792773 YP_001597694.1 CDS COXBURSA331_A2077 NC_010117.1 1895528 1895833 R identified by glimmer; putative; hypothetical protein complement(1895528..1895833) Coxiella burnetii RSA 331 5793032 YP_001597695.1 CDS COXBURSA331_A2080 NC_010117.1 1895950 1896714 D identified by match to protein family HMM PF04445; hypothetical protein 1895950..1896714 Coxiella burnetii RSA 331 5794348 YP_001597696.1 CDS COXBURSA331_A2079 NC_010117.1 1896697 1897980 R hypothetical protein complement(1896697..1897980) Coxiella burnetii RSA 331 5794224 YP_001597697.1 CDS COXBURSA331_A2081 NC_010117.1 1898125 1898529 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(1898125..1898529) Coxiella burnetii RSA 331 5794768 YP_001597698.1 CDS def2 NC_010117.1 1898640 1899269 D identified by match to protein family HMM PF01327; peptide deformylase 1898640..1899269 Coxiella burnetii RSA 331 5793404 YP_001597699.1 CDS COXBURSA331_A2084 NC_010117.1 1899266 1899685 D identified by match to protein family HMM PF03653; hypothetical protein 1899266..1899685 Coxiella burnetii RSA 331 5792858 YP_001597700.1 CDS COXBURSA331_A2083 NC_010117.1 1899682 1899855 R identified by match to protein family HMM PF00301; rubredoxin complement(1899682..1899855) Coxiella burnetii RSA 331 5793761 YP_001597701.1 CDS hemL NC_010117.1 1899898 1901205 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1899898..1901205 Coxiella burnetii RSA 331 5794258 YP_001597702.1 CDS COXBURSA331_A2086 NC_010117.1 1901202 1901756 D hypothetical protein 1901202..1901756 Coxiella burnetii RSA 331 5793445 YP_001597703.1 CDS COXBURSA331_A2087 NC_010117.1 1901759 1902238 D hypothetical protein 1901759..1902238 Coxiella burnetii RSA 331 5793031 YP_001597704.1 CDS COXBURSA331_A2089 NC_010117.1 1902321 1902458 D identified by glimmer; putative; hypothetical protein 1902321..1902458 Coxiella burnetii RSA 331 5793940 YP_001597705.1 CDS COXBURSA331_A2090 NC_010117.1 1902473 1902613 R identified by glimmer; putative; hypothetical protein complement(1902473..1902613) Coxiella burnetii RSA 331 5794895 YP_001597706.1 CDS ponA NC_010117.1 1902623 1905004 R identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 1A complement(1902623..1905004) Coxiella burnetii RSA 331 5793980 YP_001597707.1 CDS COXBURSA331_A2092 NC_010117.1 1905074 1905868 D identified by glimmer; putative; hypothetical protein 1905074..1905868 Coxiella burnetii RSA 331 5793094 YP_001597708.1 CDS COXBURSA331_A2094 NC_010117.1 1906312 1906485 R identified by glimmer; putative; hypothetical protein complement(1906312..1906485) Coxiella burnetii RSA 331 5793210 YP_001597709.1 CDS COXBURSA331_A2095 NC_010117.1 1906584 1906760 D identified by glimmer; putative; hypothetical protein 1906584..1906760 Coxiella burnetii RSA 331 5794210 YP_001597710.1 CDS COXBURSA331_A2096 NC_010117.1 1906753 1907802 D identified by match to protein family HMM PF00263; match to protein family HMM PF03958; type II and III secretion system family protein 1906753..1907802 Coxiella burnetii RSA 331 5793955 YP_001597711.1 CDS aroK NC_010117.1 1907735 1908274 D identified by match to protein family HMM PF01202; shikimate kinase 1907735..1908274 Coxiella burnetii RSA 331 5794129 YP_001597712.1 CDS aroB NC_010117.1 1908271 1909353 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 1908271..1909353 Coxiella burnetii RSA 331 5794490 YP_001597713.1 CDS COXBURSA331_A2099 NC_010117.1 1909861 1910127 D identified by glimmer; putative; hypothetical protein 1909861..1910127 Coxiella burnetii RSA 331 5794215 YP_001597714.1 CDS COXBURSA331_A2100 NC_010117.1 1910136 1911362 R identified by match to protein family HMM PF07690; major facilitator transporter complement(1910136..1911362) Coxiella burnetii RSA 331 5794379 YP_001597715.1 CDS COXBURSA331_A2101 NC_010117.1 1911397 1911525 D identified by glimmer; putative; hypothetical protein 1911397..1911525 Coxiella burnetii RSA 331 5794122 YP_001597716.1 CDS COXBURSA331_A2103 NC_010117.1 1911655 1912674 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1911655..1912674 Coxiella burnetii RSA 331 5794292 YP_001597717.1 CDS COXBURSA331_A2102 NC_010117.1 1912671 1912943 R identified by glimmer; putative; hypothetical protein complement(1912671..1912943) Coxiella burnetii RSA 331 5793976 YP_001597718.1 CDS COXBURSA331_A2104 NC_010117.1 1912995 1913576 R identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; putative methyltransferase complement(1912995..1913576) Coxiella burnetii RSA 331 5792700 YP_001597719.1 CDS COXBURSA331_A2105 NC_010117.1 1913834 1913965 R identified by glimmer; putative; hypothetical protein complement(1913834..1913965) Coxiella burnetii RSA 331 5793618 YP_001597720.1 CDS COXBURSA331_A2106 NC_010117.1 1914072 1915403 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase complement(1914072..1915403) Coxiella burnetii RSA 331 5793068 YP_001597721.1 CDS COXBURSA331_A2107 NC_010117.1 1915403 1916731 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase complement(1915403..1916731) Coxiella burnetii RSA 331 5793024 YP_001597722.1 CDS ftsY NC_010117.1 1916971 1917945 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 1916971..1917945 Coxiella burnetii RSA 331 5792800 YP_001597723.1 CDS ftsE NC_010117.1 1917952 1918605 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673; ABC transporter ATP-binding protein 1917952..1918605 Coxiella burnetii RSA 331 5793747 YP_001597724.1 CDS COXBURSA331_A2110 NC_010117.1 1918716 1919543 D identified by match to protein family HMM PF02687; efflux ABC transporter permease 1918716..1919543 Coxiella burnetii RSA 331 5793050 YP_001597725.1 CDS COXBURSA331_A2111 NC_010117.1 1919585 1919734 D identified by glimmer; putative; hypothetical protein 1919585..1919734 Coxiella burnetii RSA 331 5792821 YP_001597726.1 CDS COXBURSA331_A2112 NC_010117.1 1920023 1920739 R identified by match to protein family HMM PF00583; acetyltransferase complement(1920023..1920739) Coxiella burnetii RSA 331 5792834 YP_001597727.1 CDS rpoH NC_010117.1 1920905 1921771 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 1920905..1921771 Coxiella burnetii RSA 331 5794854 YP_001597728.1 CDS com1 NC_010117.1 1921797 1922555 D identified by match to protein family HMM PF01323; outer membrane protein 1921797..1922555 Coxiella burnetii RSA 331 5794106 YP_001597729.1 CDS glyQ NC_010117.1 1923186 1924145 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1923186..1924145 Coxiella burnetii RSA 331 5792925 YP_001597730.1 CDS glyS NC_010117.1 1924148 1926217 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 1924148..1926217 Coxiella burnetii RSA 331 5793351 YP_001597731.1 CDS sun NC_010117.1 1926214 1927506 D identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; ribosomal RNA small subunit methyltransferase B 1926214..1927506 Coxiella burnetii RSA 331 5793056 YP_001597732.1 CDS COXBURSA331_A2117 NC_010117.1 1927493 1927933 R identified by match to protein family HMM PF00582; universal stress protein family protein complement(1927493..1927933) Coxiella burnetii RSA 331 5792886 YP_001597733.1 CDS rpmH NC_010117.1 1928458 1928592 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 1928458..1928592 Coxiella burnetii RSA 331 5792872 YP_001597734.1 CDS rnpA NC_010117.1 1928592 1928957 D identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component 1928592..1928957 Coxiella burnetii RSA 331 5793238 YP_001597735.1 CDS COXBURSA331_A2121 NC_010117.1 1928897 1929163 D identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 1928897..1929163 Coxiella burnetii RSA 331 5794534 YP_001597736.1 CDS oxaA NC_010117.1 1929167 1930867 D identified by match to protein family HMM PF02096; inner membrane protein oxaA 1929167..1930867 Coxiella burnetii RSA 331 5793768 YP_001597737.1 CDS COXBURSA331_A2123 NC_010117.1 1930879 1931028 D identified by glimmer; putative; hypothetical protein 1930879..1931028 Coxiella burnetii RSA 331 5794326 YP_001597738.1 CDS trmE NC_010117.1 1931361 1932719 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1931361..1932719 Coxiella burnetii RSA 331 5794164 YP_001597739.1 CDS gidA NC_010117.1 1933032 1934915 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 1933032..1934915 Coxiella burnetii RSA 331 5792926 YP_001597740.1 CDS gidB NC_010117.1 1934947 1935561 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 1934947..1935561 Coxiella burnetii RSA 331 5792743 YP_001597741.1 CDS COXBURSA331_A2127 NC_010117.1 1935568 1936338 D identified by match to protein family HMM PF01656; CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein 1935568..1936338 Coxiella burnetii RSA 331 5793899 YP_001597742.1 CDS COXBURSA331_A2128 NC_010117.1 1936335 1937201 D identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB-like partition protein 1936335..1937201 Coxiella burnetii RSA 331 5794310 YP_001597743.1 CDS COXBURSA331_A2129 NC_010117.1 1937460 1940018 D identified by match to protein family HMM PF00501; match to protein family HMM PF01553; acyltransferase family protein 1937460..1940018 Coxiella burnetii RSA 331 5793743 YP_001597744.1 CDS COXBURSA331_A2130 NC_010117.1 1940092 1941399 D identified by match to protein family HMM PF07690; major facilitator family transporter 1940092..1941399 Coxiella burnetii RSA 331 5793593 YP_001597745.1 CDS COXBURSA331_A2131 NC_010117.1 1941443 1941619 D identified by glimmer; putative; hypothetical protein 1941443..1941619 Coxiella burnetii RSA 331 5793693 YP_001597746.1 CDS COXBURSA331_A2132 NC_010117.1 1942025 1942156 D identified by glimmer; putative; hypothetical protein 1942025..1942156 Coxiella burnetii RSA 331 5794307 YP_001597747.1 CDS COXBURSA331_A2133 NC_010117.1 1942158 1942352 R identified by glimmer; putative; hypothetical protein complement(1942158..1942352) Coxiella burnetii RSA 331 5793974 YP_001597748.1 CDS COXBURSA331_A2134 NC_010117.1 1942460 1943284 D identified by match to protein family HMM PF02735; match to protein family HMM TIGR02772; Ku protein 1942460..1943284 Coxiella burnetii RSA 331 5794462 YP_001597749.1 CDS ligD NC_010117.1 1943281 1945728 D identified by match to protein family HMM PF01068; match to protein family HMM PF01896; match to protein family HMM PF04679; match to protein family HMM TIGR02776; match to protein family HMM TIGR02777; match to protein family HMM TIGR02778; match to protein family HMM TIGR02779; DNA ligase D 1943281..1945728 Coxiella burnetii RSA 331 5793783 YP_001597750.1 CDS COXBURSA331_A2136 NC_010117.1 1946002 1946115 R identified by glimmer; putative; hypothetical protein complement(1946002..1946115) Coxiella burnetii RSA 331 5793152 YP_001597751.1 CDS COXBURSA331_A2137 NC_010117.1 1946082 1946603 R identified by glimmer; putative; hypothetical protein complement(1946082..1946603) Coxiella burnetii RSA 331 5794576 YP_001597752.1 CDS COXBURSA331_A2138 NC_010117.1 1946604 1947401 R identified by glimmer; putative; hypothetical protein complement(1946604..1947401) Coxiella burnetii RSA 331 5792825 YP_001597753.1 CDS COXBURSA331_A2139 NC_010117.1 1947344 1947544 R identified by glimmer; putative; hypothetical protein complement(1947344..1947544) Coxiella burnetii RSA 331 5793154 YP_001597754.1 CDS atpI NC_010117.1 1949026 1949427 D identified by match to protein family HMM PF03899; ATP synthase F0, I subunit 1949026..1949427 Coxiella burnetii RSA 331 5793412 YP_001597755.1 CDS atpB NC_010117.1 1949428 1950222 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 1949428..1950222 Coxiella burnetii RSA 331 5794718 YP_001597756.1 CDS atpE NC_010117.1 1950240 1950542 D identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260; ATP synthase F0 subunit C 1950240..1950542 Coxiella burnetii RSA 331 5793409 YP_001597757.1 CDS atpF NC_010117.1 1950671 1951141 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 1950671..1951141 Coxiella burnetii RSA 331 5792717 YP_001597758.1 CDS atpH NC_010117.1 1951141 1951698 D identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145; ATP synthase F1 subunit delta 1951141..1951698 Coxiella burnetii RSA 331 5793054 YP_001597759.1 CDS atpA NC_010117.1 1951706 1953253 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 1951706..1953253 Coxiella burnetii RSA 331 5794720 YP_001597760.1 CDS atpG NC_010117.1 1953352 1954221 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 1953352..1954221 Coxiella burnetii RSA 331 5794377 YP_001597761.1 CDS atpD NC_010117.1 1954323 1955708 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1954323..1955708 Coxiella burnetii RSA 331 5793654 YP_001597762.1 CDS COXBURSA331_A2149 NC_010117.1 1955705 1955839 D identified by glimmer; putative; hypothetical protein 1955705..1955839 Coxiella burnetii RSA 331 5793283 YP_001597763.1 CDS atpC NC_010117.1 1955832 1956260 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 1955832..1956260 Coxiella burnetii RSA 331 5793784 YP_001597764.1 CDS glmU NC_010117.1 1956279 1957646 D identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173; UDP-N-acetylglucosamine pyrophosphorylase 1956279..1957646 Coxiella burnetii RSA 331 5793389 YP_001597765.1 CDS COXBURSA331_A2153 NC_010117.1 1959666 1960112 R identified by glimmer; putative; hypothetical protein complement(1959666..1960112) Coxiella burnetii RSA 331 5794207 YP_001597766.1 CDS COXBURSA331_A2154 NC_010117.1 1960174 1960290 D identified by glimmer; putative; hypothetical protein 1960174..1960290 Coxiella burnetii RSA 331 5794743 YP_001597767.1 CDS COXBURSA331_A2156 NC_010117.1 1960356 1961954 D identified by match to protein family HMM PF00005; match to protein family HMM PF02463; ABC transporter ATP-binding protein 1960356..1961954 Coxiella burnetii RSA 331 5793058 YP_001597768.1 CDS COXBURSA331_A2155 NC_010117.1 1961912 1962523 R identified by glimmer; putative; hypothetical protein complement(1961912..1962523) Coxiella burnetii RSA 331 5793447 YP_001597769.1 CDS COXBURSA331_A2157 NC_010117.1 1962718 1963590 R identified by glimmer; putative; hypothetical protein complement(1962718..1963590) Coxiella burnetii RSA 331 5794113 YP_001597770.1 CDS pntAA NC_010117.1 1963675 1964838 D identified by match to protein family HMM PF01262; match to protein family HMM PF05222; NAD(P) transhydrogenase subunit alpha 1963675..1964838 Coxiella burnetii RSA 331 5793301 YP_001597771.1 CDS pntAB NC_010117.1 1965221 1965520 D NAD(P) transhydrogenase subunit alpha 1965221..1965520 Coxiella burnetii RSA 331 5793309 YP_001597772.1 CDS pntB NC_010117.1 1965517 1966887 D identified by match to protein family HMM PF02233; NAD(P) transhydrogenase subunit alpha 1965517..1966887 Coxiella burnetii RSA 331 5793679 YP_001597773.1 CDS COXBURSA331_A2161 NC_010117.1 1967547 1968281 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1967547..1968281) Coxiella burnetii RSA 331 5793894 YP_001597774.1 CDS COXBURSA331_A2164 NC_010117.1 1968376 1968648 D identified by glimmer; putative; hypothetical protein 1968376..1968648 Coxiella burnetii RSA 331 5794271 YP_001597775.1 CDS COXBURSA331_A2163 NC_010117.1 1968645 1969355 R identified by match to protein family HMM PF01548; transposase for insertion sequence element IS1111A complement(1968645..1969355) Coxiella burnetii RSA 331 5792849 YP_001597776.1 CDS prlC NC_010117.1 1969404 1971437 D identified by match to protein family HMM PF01432; oligopeptidase A 1969404..1971437 Coxiella burnetii RSA 331 5794839 YP_001597777.1 CDS COXBURSA331_A2167 NC_010117.1 1971518 1972501 D identified by match to protein family HMM PF08541; match to protein family HMM PF08545; putative 3-oxoacyl-(acyl-carrier-protein) synthase III 1971518..1972501 Coxiella burnetii RSA 331 5793819 YP_001597778.1 CDS COXBURSA331_A2168 NC_010117.1 1972699 1973316 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 1972699..1973316 Coxiella burnetii RSA 331 5794500 YP_001597779.1 CDS COXBURSA331_A2169 NC_010117.1 1973320 1973799 D identified by match to protein family HMM PF07977; putative beta-hydroxyacyl-(acyl-carrier-protein) dehydratase 1973320..1973799 Coxiella burnetii RSA 331 5793245 YP_001597780.1 CDS COXBURSA331_A2170 NC_010117.1 1973796 1975070 D identified by match to protein family HMM PF00109; match to protein family HMM PF02801; beta-ketoacyl-acyl-carrier-protein-synthase family protein 1973796..1975070 Coxiella burnetii RSA 331 5793098 YP_001597781.1 CDS COXBURSA331_A2171 NC_010117.1 1975093 1975353 D putative acyl carrier protein 1975093..1975353 Coxiella burnetii RSA 331 5793602 YP_001597782.1 CDS COXBURSA331_A2172 NC_010117.1 1975357 1976058 D identified by glimmer; putative; hypothetical protein 1975357..1976058 Coxiella burnetii RSA 331 5793963 YP_001597783.1 CDS COXBURSA331_A2173 NC_010117.1 1976661 1977599 D putative oxidoreductase 1976661..1977599 Coxiella burnetii RSA 331 5793334 YP_001597784.1 CDS COXBURSA331_A2174 NC_010117.1 1977698 1978885 D identified by match to protein family HMM PF00368; hydroxymethylglutaryl-coenzyme A reductase 1977698..1978885 Coxiella burnetii RSA 331 5793734 YP_001597785.1 CDS COXBURSA331_A2175 NC_010117.1 1979031 1979570 D identified by match to protein family HMM PF01553; putative acyltransferase 1979031..1979570 Coxiella burnetii RSA 331 5793387 YP_001597786.1 CDS COXBURSA331_A2176 NC_010117.1 1979561 1981252 D identified by match to protein family HMM PF01565; match to protein family HMM PF02913; oxidase, FAD-binding 1979561..1981252 Coxiella burnetii RSA 331 5792797 YP_001597787.1 CDS COXBURSA331_A2177 NC_010117.1 1981249 1982139 D identified by match to protein family HMM PF01553; putative acyltransferase 1981249..1982139 Coxiella burnetii RSA 331 5792819 YP_001597788.1 CDS rpiA NC_010117.1 1982281 1982943 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1982281..1982943 Coxiella burnetii RSA 331 5793079 YP_001597789.1 CDS COXBURSA331_A2179 NC_010117.1 1983090 1983212 D identified by glimmer; putative; hypothetical protein 1983090..1983212 Coxiella burnetii RSA 331 5794376 YP_001597790.1 CDS csrA2 NC_010117.1 1983308 1983514 D identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202; carbon storage regulator 1983308..1983514 Coxiella burnetii RSA 331 5793865 YP_001597791.1 CDS COXBURSA331_A2181 NC_010117.1 1983654 1984154 D identified by glimmer; putative; hypothetical protein 1983654..1984154 Coxiella burnetii RSA 331 5792975 YP_001597792.1 CDS COXBURSA331_A2182 NC_010117.1 1984160 1984969 R identified by glimmer; putative; hypothetical protein complement(1984160..1984969) Coxiella burnetii RSA 331 5793440 YP_001597793.1 CDS COXBURSA331_A2183 NC_010117.1 1985207 1987618 R identified by glimmer; putative; hypothetical protein complement(1985207..1987618) Coxiella burnetii RSA 331 5794392 YP_001597794.1 CDS COXBURSA331_A2184 NC_010117.1 1987862 1988398 D identified by match to protein family HMM PF00313; match to protein family HMM TIGR00741; ribosomal subunit interface protein domain/'cold-shock' DNA-binding domain-containing protein 1987862..1988398 Coxiella burnetii RSA 331 5792808 YP_001597795.1 CDS COXBURSA331_A2185 NC_010117.1 1988629 1989072 R identified by glimmer; putative; hypothetical protein complement(1988629..1989072) Coxiella burnetii RSA 331 5793666 YP_001597796.1 CDS deoC NC_010117.1 1989156 1989881 R identified by match to protein family HMM PF01791; match to protein family HMM TIGR00126; deoxyribose-phosphate aldolase complement(1989156..1989881) Coxiella burnetii RSA 331 5793379 YP_001597797.1 CDS xapA NC_010117.1 1989878 1990699 R catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase complement(1989878..1990699) Coxiella burnetii RSA 331 5794156 YP_001597798.1 CDS COXBURSA331_A2188 NC_010117.1 1990701 1991381 R identified by match to protein family HMM PF01865; match to protein family HMM TIGR00153; hypothetical protein complement(1990701..1991381) Coxiella burnetii RSA 331 5792911 YP_001597799.1 CDS COXBURSA331_A2189 NC_010117.1 1991494 1992747 D identified by match to protein family HMM PF01384; phosphate transporter family protein 1991494..1992747 Coxiella burnetii RSA 331 5794175 YP_001597800.1 CDS COXBURSA331_A2190 NC_010117.1 1993017 1993826 D identified by glimmer; putative; hypothetical protein 1993017..1993826 Coxiella burnetii RSA 331 5794645 YP_001597801.1 CDS aroE NC_010117.1 1994170 1994988 R identified by match to protein family HMM PF01488; match to protein family HMM PF08501; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase complement(1994170..1994988) Coxiella burnetii RSA 331 5793247 YP_001597802.1 CDS dacB NC_010117.1 1994981 1996414 R identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase complement(1994981..1996414) Coxiella burnetii RSA 331 5792753 YP_001597803.1 CDS COXBURSA331_A2193 NC_010117.1 1996414 1996968 R identified by glimmer; putative; hypothetical protein complement(1996414..1996968) Coxiella burnetii RSA 331 5794608 YP_001597804.1 CDS COXBURSA331_A2194 NC_010117.1 1997170 1997283 D identified by glimmer; putative; hypothetical protein 1997170..1997283 Coxiella burnetii RSA 331 5794337 YP_001597805.1 CDS COXBURSA331_A2195 NC_010117.1 1997286 1997579 D identified by match to protein family HMM PF04365; hypothetical protein 1997286..1997579 Coxiella burnetii RSA 331 5794400 YP_001597806.1 CDS COXBURSA331_A2196 NC_010117.1 1997576 1997788 D hypothetical protein 1997576..1997788 Coxiella burnetii RSA 331 5793193 YP_001597807.1 CDS COXBURSA331_A2198 NC_010117.1 1998075 1998191 D identified by glimmer; putative; hypothetical protein 1998075..1998191 Coxiella burnetii RSA 331 5793668 YP_001597808.1 CDS COXBURSA331_A2197 NC_010117.1 1998188 1999207 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A complement(1998188..1999207) Coxiella burnetii RSA 331 5794523 YP_001597809.1 CDS COXBURSA331_A2199 NC_010117.1 1999395 1999691 R hypothetical protein complement(1999395..1999691) Coxiella burnetii RSA 331 5792748 YP_001597810.1 CDS COXBURSA331_A2200 NC_010117.1 1999703 1999822 R identified by glimmer; putative; hypothetical protein complement(1999703..1999822) Coxiella burnetii RSA 331 5794250 YP_001597811.1 CDS COXBURSA331_A2201 NC_010117.1 1999898 2000086 R identified by glimmer; putative; hypothetical protein complement(1999898..2000086) Coxiella burnetii RSA 331 5793222 YP_001597812.1 CDS queC NC_010117.1 2000098 2000778 R identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364; queuosine biosynthesis protein QueC complement(2000098..2000778) Coxiella burnetii RSA 331 5793690 YP_001597813.1 CDS COXBURSA331_A2203 NC_010117.1 2000850 2001617 R hypothetical protein complement(2000850..2001617) Coxiella burnetii RSA 331 5792856 YP_001597814.1 CDS hemY NC_010117.1 2001620 2002798 R identified by match to protein family HMM PF07219; hemY protein complement(2001620..2002798) Coxiella burnetii RSA 331 5792980 YP_001597815.1 CDS COXBURSA331_A2205 NC_010117.1 2002803 2003756 R identified by match to protein family HMM PF04375; putaitve hemX protein complement(2002803..2003756) Coxiella burnetii RSA 331 5794261 YP_001597816.1 CDS COXBURSA331_A2206 NC_010117.1 2003846 2004205 R identified by glimmer; putative; hypothetical protein complement(2003846..2004205) Coxiella burnetii RSA 331 5794627 YP_001597817.1 CDS COXBURSA331_A2207 NC_010117.1 2004560 2005606 D identified by match to protein family HMM PF02661; hypothetical protein 2004560..2005606 Coxiella burnetii RSA 331 5793101 YP_001597818.1 CDS COXBURSA331_A2209 NC_010117.1 2005691 2006710 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 2005691..2006710 Coxiella burnetii RSA 331 5793049 YP_001597819.1 CDS COXBURSA331_A2208 NC_010117.1 2006707 2006979 R identified by glimmer; putative; hypothetical protein complement(2006707..2006979) Coxiella burnetii RSA 331 5794840 YP_001597820.1 CDS rho NC_010117.1 2007064 2008320 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(2007064..2008320) Coxiella burnetii RSA 331 5793968 YP_001597821.1 CDS trxA NC_010117.1 2008496 2008834 R identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin complement(2008496..2008834) Coxiella burnetii RSA 331 5793657 YP_001597822.1 CDS COXBURSA331_A2213 NC_010117.1 2009251 2010600 D identified by match to protein family HMM PF00209; sodium:neurotransmitter symporter family protein 2009251..2010600 Coxiella burnetii RSA 331 5793503 YP_001597823.1 CDS COXBURSA331_A2214 NC_010117.1 2010695 2011273 R identified by match to protein family HMM PF02325; hypothetical protein complement(2010695..2011273) Coxiella burnetii RSA 331 5794060 YP_001597824.1 CDS proC NC_010117.1 2011273 2012097 R identified by match to protein family HMM PF01210; match to protein family HMM PF03807; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase complement(2011273..2012097) Coxiella burnetii RSA 331 5794037 YP_001597825.1 CDS COXBURSA331_A2216 NC_010117.1 2012094 2012780 R identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein complement(2012094..2012780) Coxiella burnetii RSA 331 5793973 YP_001597826.1 CDS pckA NC_010117.1 2012770 2014323 R PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase complement(2012770..2014323) Coxiella burnetii RSA 331 5794006 YP_001597827.1 CDS COXBURSA331_A2218 NC_010117.1 2014358 2014486 R identified by glimmer; putative; hypothetical protein complement(2014358..2014486) Coxiella burnetii RSA 331 5793598 YP_001597828.1 CDS COXBURSA331_A2219 NC_010117.1 2014457 2015002 D identified by match to protein family HMM PF02622; hypothetical protein 2014457..2015002 Coxiella burnetii RSA 331 5793910 YP_001597829.1 CDS COXBURSA331_A2220 NC_010117.1 2014995 2015420 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 2014995..2015420 Coxiella burnetii RSA 331 5794121 YP_001597830.1 CDS pyrB NC_010117.1 2015413 2016345 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 2015413..2016345 Coxiella burnetii RSA 331 5793416 COXBURSA331_A0186 tRNA COXBURSA331_A0186 NC_010117.1 165671 165746 R tRNA-Glu complement(165671..165746) Coxiella burnetii RSA 331 5793969 COXBURSA331_A0187 tRNA COXBURSA331_A0187 NC_010117.1 165788 165863 R tRNA-Ala complement(165788..165863) Coxiella burnetii RSA 331 5794731 COXBURSA331_A0249 tRNA COXBURSA331_A0249 NC_010117.1 216517 216592 D tRNA-Thr 216517..216592 Coxiella burnetii RSA 331 5794746 COXBURSA331_A0276 tRNA COXBURSA331_A0276 NC_010117.1 241208 241284 D tRNA-Ile 241208..241284 Coxiella burnetii RSA 331 5794696 COXBURSA331_A0277 tRNA COXBURSA331_A0277 NC_010117.1 241289 241364 D tRNA-Ala 241289..241364 Coxiella burnetii RSA 331 5794699 COXBURSA331_A0300 tRNA COXBURSA331_A0300 NC_010117.1 266862 266937 D tRNA-Thr 266862..266937 Coxiella burnetii RSA 331 5794590 COXBURSA331_A0315 tRNA COXBURSA331_A0315 NC_010117.1 279778 279864 D tRNA-Tyr 279778..279864 Coxiella burnetii RSA 331 5794563 COXBURSA331_A0318 tRNA COXBURSA331_A0318 NC_010117.1 279990 280064 D tRNA-Gly 279990..280064 Coxiella burnetii RSA 331 5794615 COXBURSA331_A0317 tRNA COXBURSA331_A0317 NC_010117.1 280064 280139 D tRNA-Thr 280064..280139 Coxiella burnetii RSA 331 5794616 COXBURSA331_A0320 tRNA COXBURSA331_A0320 NC_010117.1 281533 281610 D tRNA-Trp 281533..281610 Coxiella burnetii RSA 331 5794592 COXBURSA331_A0389 tRNA COXBURSA331_A0389 NC_010117.1 332162 332239 R tRNA-Glu complement(332162..332239) Coxiella burnetii RSA 331 5794458 COXBURSA331_A0491 tRNA COXBURSA331_A0491 NC_010117.1 418998 419074 R tRNA-Pro complement(418998..419074) Coxiella burnetii RSA 331 5793228 COXBURSA331_A0521 tRNA COXBURSA331_A0521 NC_010117.1 445027 445102 D tRNA-Lys 445027..445102 Coxiella burnetii RSA 331 5793014 COXBURSA331_A0629 tRNA COXBURSA331_A0629 NC_010117.1 537284 537361 R tRNA-Asn complement(537284..537361) Coxiella burnetii RSA 331 5793772 COXBURSA331_A0776 tRNA COXBURSA331_A0776 NC_010117.1 685414 685504 R tRNA-Ser complement(685414..685504) Coxiella burnetii RSA 331 5794001 COXBURSA331_A0785 tRNA COXBURSA331_A0785 NC_010117.1 691109 691185 D tRNA-Pro 691109..691185 Coxiella burnetii RSA 331 5794486 COXBURSA331_A0787 tRNA COXBURSA331_A0787 NC_010117.1 692709 692787 D tRNA-Arg 692709..692787 Coxiella burnetii RSA 331 5792759 COXBURSA331_A0788 tRNA COXBURSA331_A0788 NC_010117.1 692901 692978 D tRNA-His 692901..692978 Coxiella burnetii RSA 331 5794501 COXBURSA331_A0823 tRNA COXBURSA331_A0823 NC_010117.1 735119 735194 D tRNA-Lys 735119..735194 Coxiella burnetii RSA 331 5794303 COXBURSA331_A0886 tRNA COXBURSA331_A0886 NC_010117.1 791118 791211 D tRNA-Ser 791118..791211 Coxiella burnetii RSA 331 5793594 COXBURSA331_A0903 tRNA COXBURSA331_A0903 NC_010117.1 803832 803910 R tRNA-Arg complement(803832..803910) Coxiella burnetii RSA 331 5793117 COXBURSA331_A0909 tRNA COXBURSA331_A0909 NC_010117.1 807775 807852 D tRNA-Gly 807775..807852 Coxiella burnetii RSA 331 5792769 COXBURSA331_A0924 tRNA COXBURSA331_A0924 NC_010117.1 821696 821783 R tRNA-Leu complement(821696..821783) Coxiella burnetii RSA 331 5793251 COXBURSA331_A0925 tRNA COXBURSA331_A0925 NC_010117.1 821827 821900 R tRNA-Cys complement(821827..821900) Coxiella burnetii RSA 331 5793370 COXBURSA331_A0946 tRNA COXBURSA331_A0946 NC_010117.1 840486 840572 R tRNA-Leu complement(840486..840572) Coxiella burnetii RSA 331 5793003 COXBURSA331_A0999 tRNA COXBURSA331_A0999 NC_010117.1 888069 888144 R tRNA-Phe complement(888069..888144) Coxiella burnetii RSA 331 5793150 COXBURSA331_A1005 tRNA COXBURSA331_A1005 NC_010117.1 891959 892032 R tRNA-Gly complement(891959..892032) Coxiella burnetii RSA 331 5793967 COXBURSA331_A1154 tRNA COXBURSA331_A1154 NC_010117.1 1036098 1036184 D tRNA-Leu 1036098..1036184 Coxiella burnetii RSA 331 5792965 COXBURSA331_A1184 tRNA COXBURSA331_A1184 NC_010117.1 1069272 1069348 R tRNA-Val complement(1069272..1069348) Coxiella burnetii RSA 331 5794143 COXBURSA331_A1215 tRNA COXBURSA331_A1215 NC_010117.1 1101503 1101589 R tRNA-Leu complement(1101503..1101589) Coxiella burnetii RSA 331 5793660 COXBURSA331_A1236 tRNA COXBURSA331_A1236 NC_010117.1 1121524 1121600 D tRNA-Arg 1121524..1121600 Coxiella burnetii RSA 331 5792802 COXBURSA331_A1317 tRNA COXBURSA331_A1317 NC_010117.1 1193158 1193234 D tRNA-Arg 1193158..1193234 Coxiella burnetii RSA 331 5793774 COXBURSA331_A1336 tRNA COXBURSA331_A1336 NC_010117.1 1210701 1210790 R tRNA-Ser complement(1210701..1210790) Coxiella burnetii RSA 331 5793575 COXBURSA331_A1359 tRNA COXBURSA331_A1359 NC_010117.1 1238113 1238205 R tRNA-Ser complement(1238113..1238205) Coxiella burnetii RSA 331 5793308 COXBURSA331_A1470 tRNA COXBURSA331_A1470 NC_010117.1 1343005 1343083 R tRNA-Pro complement(1343005..1343083) Coxiella burnetii RSA 331 5794355 COXBURSA331_A1603 tRNA COXBURSA331_A1603 NC_010117.1 1467310 1467386 R tRNA-Met complement(1467310..1467386) Coxiella burnetii RSA 331 5794446 COXBURSA331_A1619 tRNA COXBURSA331_A1619 NC_010117.1 1482303 1482387 R tRNA-Leu complement(1482303..1482387) Coxiella burnetii RSA 331 5793789 COXBURSA331_A1638 tRNA COXBURSA331_A1638 NC_010117.1 1498586 1498664 R tRNA-Asp complement(1498586..1498664) Coxiella burnetii RSA 331 5794416 COXBURSA331_A1639 tRNA COXBURSA331_A1639 NC_010117.1 1498741 1498818 R tRNA-Val complement(1498741..1498818) Coxiella burnetii RSA 331 5793538 COXBURSA331_A1788 tRNA COXBURSA331_A1788 NC_010117.1 1633305 1633383 R tRNA-Met complement(1633305..1633383) Coxiella burnetii RSA 331 5794123 COXBURSA331_A2234 tRNA COXBURSA331_A2234 NC_010117.1 1851405 1851479 D tRNA-Gln 1851405..1851479 Coxiella burnetii RSA 331 9679630 COXBURSA331_A2045 tRNA COXBURSA331_A2045 NC_010117.1 1865100 1865178 D tRNA-Met 1865100..1865178 Coxiella burnetii RSA 331 5793526 COXBURSA331_A0275 rRNA rrsA NC_010117.1 239563 241019 D 16S ribosomal RNA 239563..241019 Coxiella burnetii RSA 331 5794631 COXBURSA331_A0278a rRNA rrlA NC_010117.1 241564 245901 D 23S ribosomal RNA join(241564..242781,243154..243926,244188..244247,244891..245901) Coxiella burnetii RSA 331 5794498 COXBURSA331_A0278a rRNA rrlA NC_010117.1 243130 244433 D 23S ribosomal RNA segment 243130..244433 Coxiella burnetii RSA 331 5794498 COXBURSA331_A0278b rRNA rrlA NC_010117.1 244923 245905 D 23S ribosomal RNA segment 244923..245905 Coxiella burnetii RSA 331 14444628 COXBURSA331_A0279 rRNA rrfC NC_010117.1 245950 246066 D 5S ribosomal RNA 245950..246066 Coxiella burnetii RSA 331 5794528