-- dump date 20140619_053349 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001595779.1 161789077 5792640 91..381 1 NC_010115.1 RHS repeat-containing protein 381 5792640 COXBURSA331_0001 Coxiella burnetii RSA 331 RHS repeat-containing protein YP_001595779.1 91 D 360115 CDS YP_001595780.1 161789069 5792670 complement(409..1629) 1 NC_010115.1 identified by match to protein family HMM PF00589; phage integrase family site specific recombinase 1629 5792670 COXBURSA331_0002 Coxiella burnetii RSA 331 phage integrase family site specific recombinase YP_001595780.1 409 R 360115 CDS YP_001595781.1 161789101 5792683 1870..2034 1 NC_010115.1 tyrosine recombinase domain-containing protein 2034 5792683 COXBURSA331_0004 Coxiella burnetii RSA 331 tyrosine recombinase domain-containing protein YP_001595781.1 1870 D 360115 CDS YP_001595782.1 161789108 5792676 complement(2279..2794) 1 NC_010115.1 identified by match to protein family HMM PF05660; hypothetical protein 2794 5792676 COXBURSA331_0005 Coxiella burnetii RSA 331 hypothetical protein YP_001595782.1 2279 R 360115 CDS YP_001595783.1 161789105 5792667 complement(2968..3096) 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 3096 5792667 COXBURSA331_0006 Coxiella burnetii RSA 331 hypothetical protein YP_001595783.1 2968 R 360115 CDS YP_001595784.1 161789100 5792668 complement(3373..3486) 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 3486 5792668 COXBURSA331_0007 Coxiella burnetii RSA 331 hypothetical protein YP_001595784.1 3373 R 360115 CDS YP_001595785.1 161789067 5792637 3452..4183 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 4183 5792637 COXBURSA331_0008 Coxiella burnetii RSA 331 hypothetical protein YP_001595785.1 3452 D 360115 CDS YP_001595786.1 161789080 5792678 complement(4215..4340) 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 4340 5792678 COXBURSA331_0009 Coxiella burnetii RSA 331 hypothetical protein YP_001595786.1 4215 R 360115 CDS YP_001595787.1 161789096 5792677 4569..4802 1 NC_010115.1 identified by match to protein family HMM PF00646; F-box domain-containing protein 4802 5792677 COXBURSA331_0010 Coxiella burnetii RSA 331 F-box domain-containing protein YP_001595787.1 4569 D 360115 CDS YP_001595788.1 161789084 5792679 5258..5695 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 5695 5792679 COXBURSA331_0011 Coxiella burnetii RSA 331 hypothetical protein YP_001595788.1 5258 D 360115 CDS YP_001595789.1 161789093 5792659 5719..6741 1 NC_010115.1 identified by similarity to SP:P26688; hypothetical protein 6741 5792659 COXBURSA331_0012 Coxiella burnetii RSA 331 hypothetical protein YP_001595789.1 5719 D 360115 CDS YP_001595790.1 161789104 5792643 6927..8642 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 8642 5792643 COXBURSA331_0013 Coxiella burnetii RSA 331 hypothetical protein YP_001595790.1 6927 D 360115 CDS YP_001595791.1 161789088 5792660 complement(8764..9615) 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 9615 5792660 COXBURSA331_0014 Coxiella burnetii RSA 331 hypothetical protein YP_001595791.1 8764 R 360115 CDS YP_001595792.1 161789065 5792644 complement(9642..10694) 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 10694 5792644 COXBURSA331_0015 Coxiella burnetii RSA 331 hypothetical protein YP_001595792.1 9642 R 360115 CDS YP_001595793.1 161789085 5792662 11152..11463 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 11463 5792662 COXBURSA331_0016 Coxiella burnetii RSA 331 hypothetical protein YP_001595793.1 11152 D 360115 CDS YP_001595794.1 161789089 5792647 complement(11596..12297) 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 12297 5792647 COXBURSA331_0017 Coxiella burnetii RSA 331 hypothetical protein YP_001595794.1 11596 R 360115 CDS YP_001595795.1 161789099 5792673 complement(12668..12781) 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 12781 5792673 COXBURSA331_0018 Coxiella burnetii RSA 331 hypothetical protein YP_001595795.1 12668 R 360115 CDS YP_001595796.1 161789097 5792664 12741..13184 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 13184 5792664 COXBURSA331_0019 Coxiella burnetii RSA 331 hypothetical protein YP_001595796.1 12741 D 360115 CDS YP_001595797.1 161789102 5792665 13721..13834 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 13834 5792665 COXBURSA331_0021 Coxiella burnetii RSA 331 hypothetical protein YP_001595797.1 13721 D 360115 CDS YP_001595798.1 161789083 5792648 13929..14159 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 14159 5792648 COXBURSA331_0022 Coxiella burnetii RSA 331 hypothetical protein YP_001595798.1 13929 D 360115 CDS YP_001595799.1 161789094 5792661 14210..14344 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 14344 5792661 COXBURSA331_0023 Coxiella burnetii RSA 331 hypothetical protein YP_001595799.1 14210 D 360115 CDS YP_001595800.1 161789082 5792634 complement(14407..14748) 1 NC_010115.1 identified by match to protein family HMM PF01381; DNA-binding protein 14748 5792634 COXBURSA331_0024 Coxiella burnetii RSA 331 DNA-binding protein YP_001595800.1 14407 R 360115 CDS YP_001595801.1 161789095 5792674 complement(14748..15113) 1 NC_010115.1 identified by match to protein family HMM PF06296; hypothetical protein 15113 5792674 COXBURSA331_0025 Coxiella burnetii RSA 331 hypothetical protein YP_001595801.1 14748 R 360115 CDS YP_001595802.1 161789070 5792663 complement(15200..15433) 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 15433 5792663 COXBURSA331_0026 Coxiella burnetii RSA 331 hypothetical protein YP_001595802.1 15200 R 360115 CDS YP_001595803.1 161789068 5792650 complement(15490..17328) 1 NC_010115.1 putative protein traI 17328 5792650 COXBURSA331_0027 Coxiella burnetii RSA 331 putative protein traI YP_001595803.1 15490 R 360115 CDS YP_001595804.1 161789090 5792686 17280..17900 1 NC_010115.1 identified by match to protein family HMM PF02592; hypothetical protein 17900 5792686 COXBURSA331_0028 Coxiella burnetii RSA 331 hypothetical protein YP_001595804.1 17280 D 360115 CDS YP_001595805.1 161789066 5792655 18639..18821 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 18821 5792655 COXBURSA331_0030 Coxiella burnetii RSA 331 hypothetical protein YP_001595805.1 18639 D 360115 CDS YP_001595806.1 161789107 5792671 18826..19179 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 19179 5792671 COXBURSA331_0031 Coxiella burnetii RSA 331 hypothetical protein YP_001595806.1 18826 D 360115 CDS YP_001595807.1 161789081 5792651 complement(19722..20255) 1 NC_010115.1 identified by match to protein family HMM PF00132; hexapeptide repeat-containing transferase 20255 5792651 COXBURSA331_0032 Coxiella burnetii RSA 331 hexapeptide repeat-containing transferase YP_001595807.1 19722 R 360115 CDS YP_001595808.1 161789072 5792658 complement(20584..21453) 1 NC_010115.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB-like partition domain-containing protein 21453 5792658 COXBURSA331_0033 Coxiella burnetii RSA 331 ParB-like partition domain-containing protein YP_001595808.1 20584 R 360115 CDS YP_001595809.1 161789078 5792654 21646..21786 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 21786 5792654 COXBURSA331_0034 Coxiella burnetii RSA 331 hypothetical protein YP_001595809.1 21646 D 360115 CDS YP_001595810.1 161789071 5792652 21817..23037 1 NC_010115.1 identified by match to protein family HMM PF01656; putative protein sopA 23037 5792652 COXBURSA331_0035 Coxiella burnetii RSA 331 putative protein sopA YP_001595810.1 21817 D 360115 CDS YP_001595811.1 161789092 5792656 23030..24034 1 NC_010115.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; putative repB protein 24034 5792656 COXBURSA331_0036 Coxiella burnetii RSA 331 putative repB protein YP_001595811.1 23030 D 360115 CDS YP_001595812.1 161789091 5792646 24063..25379 1 NC_010115.1 identified by match to protein family HMM PF01051; initiator RepB protein 25379 5792646 COXBURSA331_0037 Coxiella burnetii RSA 331 initiator RepB protein YP_001595812.1 24063 D 360115 CDS YP_001595813.1 161789076 5792641 complement(25470..26027) 1 NC_010115.1 hypothetical protein 26027 5792641 COXBURSA331_0038 Coxiella burnetii RSA 331 hypothetical protein YP_001595813.1 25470 R 360115 CDS YP_001595814.1 161789074 5792653 26431..26889 1 NC_010115.1 identified by match to protein family HMM PF01381; match to protein family HMM TIGR02612; mobile mystery protein A 26889 5792653 COXBURSA331_0039 Coxiella burnetii RSA 331 mobile mystery protein A YP_001595814.1 26431 D 360115 CDS YP_001595815.1 161789098 5792657 26892..27026 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 27026 5792657 COXBURSA331_0040 Coxiella burnetii RSA 331 hypothetical protein YP_001595815.1 26892 D 360115 CDS YP_001595816.1 161789075 5792684 complement(27669..27782) 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 27782 5792684 COXBURSA331_0043 Coxiella burnetii RSA 331 hypothetical protein YP_001595816.1 27669 R 360115 CDS YP_001595817.1 161789073 5792636 27826..28032 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 28032 5792636 COXBURSA331_0045 Coxiella burnetii RSA 331 hypothetical protein YP_001595817.1 27826 D 360115 CDS YP_001595818.1 161789064 5792645 28074..28643 1 NC_010115.1 putative integrase 28643 5792645 COXBURSA331_0046 Coxiella burnetii RSA 331 putative integrase YP_001595818.1 28074 D 360115 CDS YP_001595819.1 161789079 5792633 28898..29923 1 NC_010115.1 hypothetical protein 29923 5792633 COXBURSA331_0047 Coxiella burnetii RSA 331 hypothetical protein YP_001595819.1 28898 D 360115 CDS YP_001595820.1 161789106 5792685 complement(30121..31206) 1 NC_010115.1 hypothetical protein 31206 5792685 COXBURSA331_0048 Coxiella burnetii RSA 331 hypothetical protein YP_001595820.1 30121 R 360115 CDS YP_001595821.1 161789086 5792666 31205..31327 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 31327 5792666 COXBURSA331_0049 Coxiella burnetii RSA 331 hypothetical protein YP_001595821.1 31205 D 360115 CDS YP_001595822.1 161789103 5792680 31896..32405 1 NC_010115.1 identified by match to protein family HMM PF00877; NlpC/P60 domain-containing protein 32405 5792680 COXBURSA331_0051 Coxiella burnetii RSA 331 NlpC/P60 domain-containing protein YP_001595822.1 31896 D 360115 CDS YP_001595823.1 161789087 5792682 32456..32683 1 NC_010115.1 identified by glimmer; putative; hypothetical protein 32683 5792682 COXBURSA331_0052 Coxiella burnetii RSA 331 hypothetical protein YP_001595823.1 32456 D 360115 CDS YP_001595901.1 161830473 5793287 140..1495 1 NC_010117.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1495 dnaA 5793287 dnaA Coxiella burnetii RSA 331 chromosomal replication initiation protein YP_001595901.1 140 D 360115 CDS YP_001595902.1 161831398 5793953 1639..2748 1 NC_010117.1 identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663; DNA polymerase III subunit beta 2748 dnaN 5793953 dnaN Coxiella burnetii RSA 331 DNA polymerase III subunit beta YP_001595902.1 1639 D 360115 CDS YP_001595903.1 161830866 5794053 2753..3826 1 NC_010117.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00611; DNA replication and repair protein RecF 3826 recF 5794053 recF Coxiella burnetii RSA 331 DNA replication and repair protein RecF YP_001595903.1 2753 D 360115 CDS YP_001595904.1 161831267 5794818 complement(4005..4148) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 4148 5794818 COXBURSA331_A0004 Coxiella burnetii RSA 331 hypothetical protein YP_001595904.1 4005 R 360115 CDS YP_001595905.1 161830408 5793527 4128..6554 1 NC_010117.1 identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase subunit B 6554 gyrB 5793527 gyrB Coxiella burnetii RSA 331 DNA gyrase subunit B YP_001595905.1 4128 D 360115 CDS YP_001595906.1 161831254 5794902 6780..7799 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 7799 5794902 COXBURSA331_A0007 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001595906.1 6780 D 360115 CDS YP_001595907.1 161830165 5793726 complement(7796..8068) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 8068 5793726 COXBURSA331_A0006 Coxiella burnetii RSA 331 hypothetical protein YP_001595907.1 7796 R 360115 CDS YP_001595908.1 161831413 5792879 complement(8215..9021) 1 NC_010117.1 identified by match to protein family HMM PF02602; uroporphyrinogen-III synthase 9021 hemD 5792879 hemD Coxiella burnetii RSA 331 uroporphyrinogen-III synthase YP_001595908.1 8215 R 360115 CDS YP_001595909.1 161831543 5792810 complement(9011..9328) 1 NC_010117.1 hypothetical protein 9328 5792810 COXBURSA331_A0009 Coxiella burnetii RSA 331 hypothetical protein YP_001595909.1 9011 R 360115 CDS YP_001595910.1 161831551 5794859 complement(9338..10039) 1 NC_010117.1 identified by match to protein family HMM PF01487; match to protein family HMM TIGR01093; 3-dehydroquinate dehydratase 10039 aroD 5794859 aroD Coxiella burnetii RSA 331 3-dehydroquinate dehydratase YP_001595910.1 9338 R 360115 CDS YP_001595911.1 161831110 5793322 complement(10039..10962) 1 NC_010117.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 10962 hemC 5793322 hemC Coxiella burnetii RSA 331 porphobilinogen deaminase YP_001595911.1 10039 R 360115 CDS YP_001595912.1 161830543 5793159 complement(10946..11848) 1 NC_010117.1 identified by match to protein family HMM PF01553; putative acyltransferase 11848 5793159 COXBURSA331_A0012 Coxiella burnetii RSA 331 putative acyltransferase YP_001595912.1 10946 R 360115 CDS YP_001595913.1 161831338 5794875 complement(11884..12381) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 12381 5794875 COXBURSA331_A0013 Coxiella burnetii RSA 331 hypothetical protein YP_001595913.1 11884 R 360115 CDS YP_001595914.1 161830428 5794841 complement(12601..13083) 1 NC_010117.1 hypothetical protein 13083 5794841 COXBURSA331_A0014 Coxiella burnetii RSA 331 hypothetical protein YP_001595914.1 12601 R 360115 CDS YP_001595915.1 161829738 5793840 13159..13569 1 NC_010117.1 identified by match to protein family HMM PF01817; chorismate mutase family protein 13569 5793840 COXBURSA331_A0015 Coxiella burnetii RSA 331 chorismate mutase family protein YP_001595915.1 13159 D 360115 CDS YP_001595916.1 161831538 5794807 13586..14176 1 NC_010117.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 14176 tdk 5794807 tdk Coxiella burnetii RSA 331 thymidine kinase YP_001595916.1 13586 D 360115 CDS YP_001595917.1 161830348 5793051 14177..14296 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 14296 5793051 COXBURSA331_A0017 Coxiella burnetii RSA 331 hypothetical protein YP_001595917.1 14177 D 360115 CDS YP_001595918.1 161831122 5793184 14317..15657 1 NC_010117.1 identified by match to protein family HMM PF07690; major facilitator family transporter 15657 5793184 COXBURSA331_A0018 Coxiella burnetii RSA 331 major facilitator family transporter YP_001595918.1 14317 D 360115 CDS YP_001595919.1 161831130 5793320 15638..16996 1 NC_010117.1 identified by match to protein family HMM PF07690; major facilitator family transporter 16996 5793320 COXBURSA331_A0019 Coxiella burnetii RSA 331 major facilitator family transporter YP_001595919.1 15638 D 360115 CDS YP_001595920.1 161831015 5794049 17008..17835 1 NC_010117.1 identified by match to protein family HMM PF01925; hypothetical protein 17835 5794049 COXBURSA331_A0020 Coxiella burnetii RSA 331 hypothetical protein YP_001595920.1 17008 D 360115 CDS YP_001595921.1 161830023 5793371 17816..18454 1 NC_010117.1 hypothetical protein 18454 5793371 COXBURSA331_A0021 Coxiella burnetii RSA 331 hypothetical protein YP_001595921.1 17816 D 360115 CDS YP_001595922.1 161831550 5793360 complement(18493..18789) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 18789 5793360 COXBURSA331_A0022 Coxiella burnetii RSA 331 hypothetical protein YP_001595922.1 18493 R 360115 CDS YP_001595923.1 161829805 5793606 20560..21762 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 21762 5793606 COXBURSA331_A0024 Coxiella burnetii RSA 331 hypothetical protein YP_001595923.1 20560 D 360115 CDS YP_001595924.1 161831327 5793607 21955..23271 1 NC_010117.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter 23271 5793607 COXBURSA331_A0025 Coxiella burnetii RSA 331 major facilitator family transporter YP_001595924.1 21955 D 360115 CDS YP_001595925.1 161830879 5793637 23688..24665 1 NC_010117.1 hypothetical protein 24665 5793637 COXBURSA331_A0026 Coxiella burnetii RSA 331 hypothetical protein YP_001595925.1 23688 D 360115 CDS YP_001595926.1 161831441 5792713 complement(25561..26274) 1 NC_010117.1 hypothetical protein 26274 5792713 COXBURSA331_A0028 Coxiella burnetii RSA 331 hypothetical protein YP_001595926.1 25561 R 360115 CDS YP_001595927.1 161829860 5794896 complement(26271..28433) 1 NC_010117.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 28433 uvrD 5794896 uvrD Coxiella burnetii RSA 331 DNA-dependent helicase II YP_001595927.1 26271 R 360115 CDS YP_001595928.1 161831081 5794836 28463..28582 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 28582 5794836 COXBURSA331_A0030 Coxiella burnetii RSA 331 hypothetical protein YP_001595928.1 28463 D 360115 CDS YP_001595929.1 161830734 5792863 28817..29746 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 29746 5792863 COXBURSA331_A0031 Coxiella burnetii RSA 331 hypothetical protein YP_001595929.1 28817 D 360115 CDS YP_001595930.1 161829965 5794870 30176..30619 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 30619 5794870 COXBURSA331_A0032 Coxiella burnetii RSA 331 hypothetical protein YP_001595930.1 30176 D 360115 CDS YP_001595931.1 161830612 5793905 30565..31212 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 31212 5793905 COXBURSA331_A0033 Coxiella burnetii RSA 331 hypothetical protein YP_001595931.1 30565 D 360115 CDS YP_001595932.1 161830810 5794860 31244..32314 1 NC_010117.1 identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233; tryptophanyl-tRNA synthetase 32314 trpS 5794860 trpS Coxiella burnetii RSA 331 tryptophanyl-tRNA synthetase YP_001595932.1 31244 D 360115 CDS YP_001595933.1 161831447 5794900 32499..34826 1 NC_010117.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 34826 metE 5794900 metE Coxiella burnetii RSA 331 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_001595933.1 32499 D 360115 CDS YP_001595934.1 161829730 5794057 34844..35716 1 NC_010117.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase 35716 metF 5794057 metF Coxiella burnetii RSA 331 5,10-methylenetetrahydrofolate reductase YP_001595934.1 34844 D 360115 CDS YP_001595935.1 161831565 5794848 35795..35902 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 35902 5794848 COXBURSA331_A0037 Coxiella burnetii RSA 331 hypothetical protein YP_001595935.1 35795 D 360115 CDS YP_001595936.1 161830272 5794819 complement(36026..37807) 1 NC_010117.1 chitinase domain-containing protein 37807 5794819 COXBURSA331_A0038 Coxiella burnetii RSA 331 chitinase domain-containing protein YP_001595936.1 36026 R 360115 CDS YP_001595937.1 161830819 5793314 complement(37878..38162) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 38162 5793314 COXBURSA331_A0039 Coxiella burnetii RSA 331 hypothetical protein YP_001595937.1 37878 R 360115 CDS YP_001595938.1 161830478 5793316 complement(40136..40507) 1 NC_010117.1 sensory box protein 40507 5793316 COXBURSA331_A0041 Coxiella burnetii RSA 331 sensory box protein YP_001595938.1 40136 R 360115 CDS YP_001595939.1 161831332 5794843 complement(40497..41825) 1 NC_010117.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843; HlyD family type I secretion membrane fusion protein 41825 5794843 COXBURSA331_A0042 Coxiella burnetii RSA 331 HlyD family type I secretion membrane fusion protein YP_001595939.1 40497 R 360115 CDS YP_001595940.1 161830606 5793318 complement(43932..44654) 1 NC_010117.1 identified by match to protein family HMM PF00005; putative protein export ABC transporter ATP-binding protein 44654 5793318 COXBURSA331_A0044 Coxiella burnetii RSA 331 putative protein export ABC transporter ATP-binding protein YP_001595940.1 43932 R 360115 CDS YP_001595941.1 161829887 5794485 complement(44679..45677) 1 NC_010117.1 hypothetical protein 45677 5794485 COXBURSA331_A0045 Coxiella burnetii RSA 331 hypothetical protein YP_001595941.1 44679 R 360115 CDS YP_001595942.1 161830711 5793226 45676..45852 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 45852 5793226 COXBURSA331_A0046 Coxiella burnetii RSA 331 hypothetical protein YP_001595942.1 45676 D 360115 CDS YP_001595943.1 161830337 5793680 complement(45951..46472) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 46472 5793680 COXBURSA331_A0047 Coxiella burnetii RSA 331 hypothetical protein YP_001595943.1 45951 R 360115 CDS YP_001595944.1 161830129 5794815 46484..46687 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 46687 5794815 COXBURSA331_A0049 Coxiella burnetii RSA 331 hypothetical protein YP_001595944.1 46484 D 360115 CDS YP_001595945.1 161830620 5793007 complement(46646..47137) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 47137 5793007 COXBURSA331_A0048 Coxiella burnetii RSA 331 hypothetical protein YP_001595945.1 46646 R 360115 CDS YP_001595946.1 161831125 5792998 complement(47308..47424) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 47424 5792998 COXBURSA331_A0050 Coxiella burnetii RSA 331 hypothetical protein YP_001595946.1 47308 R 360115 CDS YP_001595947.1 161830022 5794491 complement(48334..49638) 1 NC_010117.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 49638 ahcY 5794491 ahcY Coxiella burnetii RSA 331 S-adenosyl-L-homocysteine hydrolase YP_001595947.1 48334 R 360115 CDS YP_001595948.1 161831401 5794137 complement(49652..50833) 1 NC_010117.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 50833 metK 5794137 metK Coxiella burnetii RSA 331 S-adenosylmethionine synthetase YP_001595948.1 49652 R 360115 CDS YP_001595949.1 161830390 5794885 50971..51603 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 51603 5794885 COXBURSA331_A0054 Coxiella burnetii RSA 331 hypothetical protein YP_001595949.1 50971 D 360115 CDS YP_001595950.1 161830772 5793464 51697..52443 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 52443 5793464 COXBURSA331_A0056 Coxiella burnetii RSA 331 hypothetical protein YP_001595950.1 51697 D 360115 CDS YP_001595951.1 161831230 5792862 52652..52939 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 52939 5792862 COXBURSA331_A0057 Coxiella burnetii RSA 331 hypothetical protein YP_001595951.1 52652 D 360115 CDS YP_001595952.1 161830314 5792968 complement(53162..54325) 1 NC_010117.1 identified by match to protein family HMM PF01053; match to protein family HMM PF01212; putative O-succinylhomoserine (thiol)-lyase 54325 5792968 COXBURSA331_A0058 Coxiella burnetii RSA 331 putative O-succinylhomoserine (thiol)-lyase YP_001595952.1 53162 R 360115 CDS YP_001595953.1 161830931 5794455 complement(54404..55354) 1 NC_010117.1 identified by match to protein family HMM PF00291; putative cystathionine beta-synthase 55354 5794455 COXBURSA331_A0059 Coxiella burnetii RSA 331 putative cystathionine beta-synthase YP_001595953.1 54404 R 360115 CDS YP_001595954.1 161829984 5794833 55432..55677 1 NC_010117.1 identified by match to protein family HMM PF04380; hypothetical protein 55677 5794833 COXBURSA331_A0060 Coxiella burnetii RSA 331 hypothetical protein YP_001595954.1 55432 D 360115 CDS YP_001595955.1 161831059 5793997 57269..58531 1 NC_010117.1 putative ATPase 58531 5793997 COXBURSA331_A0062 Coxiella burnetii RSA 331 putative ATPase YP_001595955.1 57269 D 360115 CDS YP_001595956.1 161831197 5792936 58611..60023 1 NC_010117.1 identified by match to protein family HMM PF00324; amino acid antiporter 60023 5792936 COXBURSA331_A0063 Coxiella burnetii RSA 331 amino acid antiporter YP_001595956.1 58611 D 360115 CDS YP_001595957.1 161830389 5793925 60078..60212 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 60212 5793925 COXBURSA331_A0064 Coxiella burnetii RSA 331 hypothetical protein YP_001595957.1 60078 D 360115 CDS YP_001595958.1 161830271 5794850 complement(60428..62053) 1 NC_010117.1 identified by match to protein family HMM PF03109; match to protein family HMM TIGR01982; 2-polyprenylphenol 6-hydroxylase 62053 ubiB 5794850 ubiB Coxiella burnetii RSA 331 2-polyprenylphenol 6-hydroxylase YP_001595958.1 60428 R 360115 CDS YP_001595959.1 161830100 5794487 complement(62050..62664) 1 NC_010117.1 identified by match to protein family HMM PF06843; hypothetical protein 62664 5794487 COXBURSA331_A0066 Coxiella burnetii RSA 331 hypothetical protein YP_001595959.1 62050 R 360115 CDS YP_001595960.1 161831469 5792709 complement(62664..63416) 1 NC_010117.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR01934; ubiquinone/menaquinone biosynthesis methyltransferase ubiE 63416 ubiE 5792709 ubiE Coxiella burnetii RSA 331 ubiquinone/menaquinone biosynthesis methyltransferase ubiE YP_001595960.1 62664 R 360115 CDS YP_001595961.1 161830957 5793585 complement(63496..64083) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 64083 5793585 COXBURSA331_A0068 Coxiella burnetii RSA 331 hypothetical protein YP_001595961.1 63496 R 360115 CDS YP_001595962.1 161831173 5793326 complement(65772..66251) 1 NC_010117.1 hypothetical protein 66251 5793326 COXBURSA331_A0071 Coxiella burnetii RSA 331 hypothetical protein YP_001595962.1 65772 R 360115 CDS YP_001595963.1 161830759 5794864 66479..67576 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 67576 5794864 COXBURSA331_A0073 Coxiella burnetii RSA 331 hypothetical protein YP_001595963.1 66479 D 360115 CDS YP_001595964.1 161830731 5793532 complement(67530..68873) 1 NC_010117.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 68873 hslU 5793532 hslU Coxiella burnetii RSA 331 ATP-dependent protease ATP-binding subunit HslU YP_001595964.1 67530 R 360115 CDS YP_001595965.1 161831128 5794883 complement(68952..69497) 1 NC_010117.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 69497 hslV 5794883 hslV Coxiella burnetii RSA 331 ATP-dependent protease peptidase subunit YP_001595965.1 68952 R 360115 CDS YP_001595966.1 161831301 5793711 complement(69757..69927) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 69927 5793711 COXBURSA331_A0075 Coxiella burnetii RSA 331 hypothetical protein YP_001595966.1 69757 R 360115 CDS YP_001595967.1 161830028 5793443 complement(70068..71384) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 71384 5793443 COXBURSA331_A0076 Coxiella burnetii RSA 331 hypothetical protein YP_001595967.1 70068 R 360115 CDS YP_001595968.1 161830885 5794048 complement(71399..73159) 1 NC_010117.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 73159 argS 5794048 argS Coxiella burnetii RSA 331 arginyl-tRNA synthetase YP_001595968.1 71399 R 360115 CDS YP_001595969.1 161831337 5794844 73323..74510 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 74510 5794844 COXBURSA331_A0078 Coxiella burnetii RSA 331 hypothetical protein YP_001595969.1 73323 D 360115 CDS YP_001595970.1 161829818 5793580 74557..75294 1 NC_010117.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulatory protein 75294 5793580 COXBURSA331_A0079 Coxiella burnetii RSA 331 transcriptional regulatory protein YP_001595970.1 74557 D 360115 CDS YP_001595971.1 161830232 5792695 75291..76568 1 NC_010117.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 76568 5792695 COXBURSA331_A0080 Coxiella burnetii RSA 331 sensor histidine kinase YP_001595971.1 75291 D 360115 CDS YP_001595972.1 161829953 5793719 76576..77631 1 NC_010117.1 identified by match to protein family HMM PF01075; heptosyltransferase family protein 77631 5793719 COXBURSA331_A0081 Coxiella burnetii RSA 331 heptosyltransferase family protein YP_001595972.1 76576 D 360115 CDS YP_001595973.1 161830649 5792702 complement(77709..77840) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 77840 5792702 COXBURSA331_A0082 Coxiella burnetii RSA 331 hypothetical protein YP_001595973.1 77709 R 360115 CDS YP_001595974.1 161830974 5793293 complement(78292..78852) 1 NC_010117.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 78852 5793293 COXBURSA331_A0083 Coxiella burnetii RSA 331 Sua5/YciO/YrdC/YwlC family protein YP_001595974.1 78292 R 360115 CDS YP_001595975.1 161831623 5793446 complement(78855..79355) 1 NC_010117.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 79355 purE 5793446 purE Coxiella burnetii RSA 331 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001595975.1 78855 R 360115 CDS YP_001595976.1 161830004 5793185 complement(79397..79549) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 79549 5793185 COXBURSA331_A0085 Coxiella burnetii RSA 331 hypothetical protein YP_001595976.1 79397 R 360115 CDS YP_001595977.1 161830529 5793169 complement(79563..81860) 1 NC_010117.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining; maintains net negative superhelicity; DNA topoisomerase I 81860 topA 5793169 topA Coxiella burnetii RSA 331 DNA topoisomerase I YP_001595977.1 79563 R 360115 CDS YP_001595978.1 161830825 5794085 complement(81863..82339) 1 NC_010117.1 identified by match to protein family HMM PF04361; hypothetical protein 82339 5794085 COXBURSA331_A0087 Coxiella burnetii RSA 331 hypothetical protein YP_001595978.1 81863 R 360115 CDS YP_001595979.1 161831372 5793436 complement(82339..83229) 1 NC_010117.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA 83229 dprA 5793436 dprA Coxiella burnetii RSA 331 DNA protecting protein DprA YP_001595979.1 82339 R 360115 CDS YP_001595980.1 161830760 5794445 83260..83376 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 83376 5794445 COXBURSA331_A0089 Coxiella burnetii RSA 331 hypothetical protein YP_001595980.1 83260 D 360115 CDS YP_001595981.1 161831370 5793045 83453..84397 1 NC_010117.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 84397 fmt 5793045 fmt Coxiella burnetii RSA 331 methionyl-tRNA formyltransferase YP_001595981.1 83453 D 360115 CDS YP_001595982.1 161830190 5794879 84410..84964 1 NC_010117.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 84964 5794879 COXBURSA331_A0092 Coxiella burnetii RSA 331 D,D-heptose 1,7-bisphosphate phosphatase YP_001595982.1 84410 D 360115 CDS YP_001595983.1 161830672 5794834 complement(84940..85227) 1 NC_010117.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 85227 5794834 COXBURSA331_A0091 Coxiella burnetii RSA 331 acylphosphatase YP_001595983.1 84940 R 360115 CDS YP_001595984.1 161831617 5794890 complement(85230..85349) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 85349 5794890 COXBURSA331_A0093 Coxiella burnetii RSA 331 hypothetical protein YP_001595984.1 85230 R 360115 CDS YP_001595985.1 161831101 5792712 85447..86226 1 NC_010117.1 identified by match to protein family HMM PF02677; hypothetical protein 86226 5792712 COXBURSA331_A0094 Coxiella burnetii RSA 331 hypothetical protein YP_001595985.1 85447 D 360115 CDS YP_001595986.1 161829963 5794846 86223..86708 1 NC_010117.1 identified by match to protein family HMM PF00186; dihydrofolate reductase 86708 folA 5794846 folA Coxiella burnetii RSA 331 dihydrofolate reductase YP_001595986.1 86223 D 360115 CDS YP_001595987.1 161830465 5793140 complement(86888..87763) 1 NC_010117.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 87763 apaH 5793140 apaH Coxiella burnetii RSA 331 diadenosine tetraphosphatase YP_001595987.1 86888 R 360115 CDS YP_001595988.1 161831390 5793344 complement(87776..88717) 1 NC_010117.1 identified by match to protein family HMM PF01343; signal peptide peptidase SppA, 36K type 88717 sppA 5793344 sppA Coxiella burnetii RSA 331 signal peptide peptidase SppA, 36K type YP_001595988.1 87776 R 360115 CDS YP_001595989.1 161830852 5794067 complement(88781..89266) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 89266 5794067 COXBURSA331_A0099 Coxiella burnetii RSA 331 hypothetical protein YP_001595989.1 88781 R 360115 CDS YP_001595990.1 161830294 5794872 89343..89459 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 89459 5794872 COXBURSA331_A0100 Coxiella burnetii RSA 331 hypothetical protein YP_001595990.1 89343 D 360115 CDS YP_001595991.1 161831274 5793313 complement(89524..89898) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 89898 5793313 COXBURSA331_A0101 Coxiella burnetii RSA 331 hypothetical protein YP_001595991.1 89524 R 360115 CDS YP_001595992.1 161830827 5794863 complement(90067..90501) 1 NC_010117.1 identified by match to protein family HMM PF00582; universal stress protein family protein 90501 5794863 COXBURSA331_A0102 Coxiella burnetii RSA 331 universal stress protein family protein YP_001595992.1 90067 R 360115 CDS YP_001595993.1 161830385 5793577 complement(90614..91390) 1 NC_010117.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 91390 ksgA 5793577 ksgA Coxiella burnetii RSA 331 dimethyladenosine transferase YP_001595993.1 90614 R 360115 CDS YP_001595994.1 161829776 5793915 complement(91542..92465) 1 NC_010117.1 identified by match to protein family HMM PF04166; match to protein family HMM TIGR00557; 4-hydroxythreonine-4-phosphate dehydrogenase 92465 pdxA 5793915 pdxA Coxiella burnetii RSA 331 4-hydroxythreonine-4-phosphate dehydrogenase YP_001595994.1 91542 R 360115 CDS YP_001595995.1 161830191 5793801 complement(92465..93430) 1 NC_010117.1 identified by match to protein family HMM PF00639; match to protein family HMM PF09312; putative peptidyl-prolyl cis-trans isomerase surA 93430 5793801 COXBURSA331_A0105 Coxiella burnetii RSA 331 putative peptidyl-prolyl cis-trans isomerase surA YP_001595995.1 92465 R 360115 CDS YP_001595996.1 161829772 5793072 complement(93436..96048) 1 NC_010117.1 identified by match to protein family HMM PF04453; organic solvent tolerance protein 96048 ostA 5793072 ostA Coxiella burnetii RSA 331 organic solvent tolerance protein YP_001595996.1 93436 R 360115 CDS YP_001595997.1 161831058 5793642 96138..97127 1 NC_010117.1 identified by match to protein family HMM PF01636; phosphotransferase enzyme family protein 97127 5793642 COXBURSA331_A0107 Coxiella burnetii RSA 331 phosphotransferase enzyme family protein YP_001595997.1 96138 D 360115 CDS YP_001595998.1 161829992 5793452 97133..97792 1 NC_010117.1 identified by match to protein family HMM PF00483; nucleotidyl transferase family protein 97792 5793452 COXBURSA331_A0109 Coxiella burnetii RSA 331 nucleotidyl transferase family protein YP_001595998.1 97133 D 360115 CDS YP_001595999.1 161830625 5793018 complement(97772..98440) 1 NC_010117.1 identified by match to protein family HMM PF02230; phospholipase/carboxylesterase family protein 98440 5793018 COXBURSA331_A0108 Coxiella burnetii RSA 331 phospholipase/carboxylesterase family protein YP_001595999.1 97772 R 360115 CDS YP_001596000.1 161831486 5792974 98598..98738 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 98738 5792974 COXBURSA331_A0110 Coxiella burnetii RSA 331 hypothetical protein YP_001596000.1 98598 D 360115 CDS YP_001596001.1 161830431 5794481 99211..99333 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 99333 5794481 COXBURSA331_A0112 Coxiella burnetii RSA 331 hypothetical protein YP_001596001.1 99211 D 360115 CDS YP_001596002.1 161830776 5793437 99323..100153 1 NC_010117.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 100153 dapF 5793437 dapF Coxiella burnetii RSA 331 diaminopimelate epimerase YP_001596002.1 99323 D 360115 CDS YP_001596003.1 161830966 5792840 100295..100738 1 NC_010117.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420; RNA polymerase-binding protein DksA 100738 dksA 5792840 dksA Coxiella burnetii RSA 331 RNA polymerase-binding protein DksA YP_001596003.1 100295 D 360115 CDS YP_001596004.1 161829905 5794901 100731..101084 1 NC_010117.1 identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526; dihydroneopterin aldolase 101084 folB 5794901 folB Coxiella burnetii RSA 331 dihydroneopterin aldolase YP_001596004.1 100731 D 360115 CDS YP_001596005.1 161831500 5794795 complement(101062..102237) 1 NC_010117.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; Bcr/CflA subfamily drug resistance transporter 102237 5794795 COXBURSA331_A0115 Coxiella burnetii RSA 331 Bcr/CflA subfamily drug resistance transporter YP_001596005.1 101062 R 360115 CDS YP_001596006.1 161830199 5794750 102238..102366 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 102366 5794750 COXBURSA331_A0117 Coxiella burnetii RSA 331 hypothetical protein YP_001596006.1 102238 D 360115 CDS YP_001596007.1 161830748 5793786 102368..103609 1 NC_010117.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 103609 hemA 5793786 hemA Coxiella burnetii RSA 331 glutamyl-tRNA reductase YP_001596007.1 102368 D 360115 CDS YP_001596008.1 161830069 5793956 103606..104691 1 NC_010117.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 104691 prfA 5793956 prfA Coxiella burnetii RSA 331 peptide chain release factor 1 YP_001596008.1 103606 D 360115 CDS YP_001596009.1 161830961 5794732 104694..105527 1 NC_010117.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387; protein methyltransferase HemK 105527 hemK 5794732 hemK Coxiella burnetii RSA 331 protein methyltransferase HemK YP_001596009.1 104694 D 360115 CDS YP_001596010.1 161830579 5794441 complement(105498..107399) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 107399 5794441 COXBURSA331_A0120 Coxiella burnetii RSA 331 hypothetical protein YP_001596010.1 105498 R 360115 CDS YP_001596011.1 161831499 5793675 complement(107469..107609) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 107609 5793675 COXBURSA331_A0122 Coxiella burnetii RSA 331 hypothetical protein YP_001596011.1 107469 R 360115 CDS YP_001596012.1 161829750 5793550 107779..108798 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 108798 5793550 COXBURSA331_A0124 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001596012.1 107779 D 360115 CDS YP_001596013.1 161829859 5793857 complement(108795..109067) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 109067 5793857 COXBURSA331_A0123 Coxiella burnetii RSA 331 hypothetical protein YP_001596013.1 108795 R 360115 CDS YP_001596014.1 161831284 5793557 109074..109190 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 109190 5793557 COXBURSA331_A0125 Coxiella burnetii RSA 331 hypothetical protein YP_001596014.1 109074 D 360115 CDS YP_001596015.1 161831620 5794032 109357..109569 1 NC_010117.1 identified by match to protein family HMM TIGR02449; hypothetical protein 109569 5794032 COXBURSA331_A0126 Coxiella burnetii RSA 331 hypothetical protein YP_001596015.1 109357 D 360115 CDS YP_001596016.1 161831089 5794772 109566..109889 1 NC_010117.1 identified by match to protein family HMM PF05164; hypothetical protein 109889 5794772 COXBURSA331_A0127 Coxiella burnetii RSA 331 hypothetical protein YP_001596016.1 109566 D 360115 CDS YP_001596017.1 161829968 5794705 110107..110691 1 NC_010117.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5,10-methenyltetrahydrofolate synthetase 110691 5794705 COXBURSA331_A0129 Coxiella burnetii RSA 331 5,10-methenyltetrahydrofolate synthetase YP_001596017.1 110107 D 360115 CDS YP_001596018.1 161829866 5794588 complement(110688..111032) 1 NC_010117.1 hypothetical protein 111032 5794588 COXBURSA331_A0128 Coxiella burnetii RSA 331 hypothetical protein YP_001596018.1 110688 R 360115 CDS YP_001596019.1 161830710 5793809 complement(111083..111457) 1 NC_010117.1 identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 111457 5793809 COXBURSA331_A0130 Coxiella burnetii RSA 331 rhodanese-like domain-containing protein YP_001596019.1 111083 R 360115 CDS YP_001596020.1 161830559 5794603 complement(111438..111599) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 111599 5794603 COXBURSA331_A0131 Coxiella burnetii RSA 331 hypothetical protein YP_001596020.1 111438 R 360115 CDS YP_001596021.1 161830424 5793257 complement(111646..113556) 1 NC_010117.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 113556 parE 5793257 parE Coxiella burnetii RSA 331 DNA topoisomerase IV subunit B YP_001596021.1 111646 R 360115 CDS YP_001596022.1 161830558 5794587 113689..114963 1 NC_010117.1 identified by match to protein family HMM PF00534; match to protein family HMM PF04413; 3-deoxy-D-manno-octulosonic-acid transferase family protein 114963 5794587 COXBURSA331_A0134 Coxiella burnetii RSA 331 3-deoxy-D-manno-octulosonic-acid transferase family protein YP_001596022.1 113689 D 360115 CDS YP_001596023.1 161830394 5792991 complement(114949..116457) 1 NC_010117.1 identified by match to protein family HMM PF00226; DnaJ domain-containing protein 116457 5792991 COXBURSA331_A0133 Coxiella burnetii RSA 331 DnaJ domain-containing protein YP_001596023.1 114949 R 360115 CDS YP_001596024.1 161831250 5794778 complement(116478..117716) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 117716 5794778 COXBURSA331_A0135 Coxiella burnetii RSA 331 hypothetical protein YP_001596024.1 116478 R 360115 CDS YP_001596025.1 161831632 5793628 complement(117734..118093) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 118093 5793628 COXBURSA331_A0136 Coxiella burnetii RSA 331 hypothetical protein YP_001596025.1 117734 R 360115 CDS YP_001596026.1 161829983 5793782 complement(118235..118360) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 118360 5793782 COXBURSA331_A0137 Coxiella burnetii RSA 331 hypothetical protein YP_001596026.1 118235 R 360115 CDS YP_001596027.1 161830490 5793549 complement(118471..118599) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 118599 5793549 COXBURSA331_A0138 Coxiella burnetii RSA 331 hypothetical protein YP_001596027.1 118471 R 360115 CDS YP_001596028.1 161830833 5793696 complement(118647..120497) 1 NC_010117.1 identified by match to protein family HMM PF02321; match to protein family HMM PF05036; match to protein family HMM TIGR01844; TolC family type I secretion outer membrane protein 120497 5793696 COXBURSA331_A0139 Coxiella burnetii RSA 331 TolC family type I secretion outer membrane protein YP_001596028.1 118647 R 360115 CDS YP_001596029.1 161831365 5794791 complement(120609..121472) 1 NC_010117.1 identified by match to protein family HMM PF01040; match to protein family HMM TIGR01474; 4-hydroxybenzoate polyprenyltransferase 121472 ubiA 5794791 ubiA Coxiella burnetii RSA 331 4-hydroxybenzoate polyprenyltransferase YP_001596029.1 120609 R 360115 CDS YP_001596030.1 161829807 5794781 complement(121465..122022) 1 NC_010117.1 identified by match to protein family HMM PF04345; putative chorismate--pyruvate lyase 122022 5794781 COXBURSA331_A0141 Coxiella burnetii RSA 331 putative chorismate--pyruvate lyase YP_001596030.1 121465 R 360115 CDS YP_001596031.1 161830299 5794606 complement(122092..122790) 1 NC_010117.1 identified by match to protein family HMM PF03734; putative enhanced entry protein EnhA 122790 5794606 COXBURSA331_A0142 Coxiella burnetii RSA 331 putative enhanced entry protein EnhA YP_001596031.1 122092 R 360115 CDS YP_001596032.1 161830404 5794454 122974..123534 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 123534 5794454 COXBURSA331_A0143 Coxiella burnetii RSA 331 hypothetical protein YP_001596032.1 122974 D 360115 CDS YP_001596033.1 161830941 5793266 123559..124161 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 124161 5793266 COXBURSA331_A0144 Coxiella burnetii RSA 331 hypothetical protein YP_001596033.1 123559 D 360115 CDS YP_001596034.1 161831200 5792964 124354..125664 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 125664 5792964 COXBURSA331_A0145 Coxiella burnetii RSA 331 hypothetical protein YP_001596034.1 124354 D 360115 CDS YP_001596035.1 161830733 5793271 125718..126698 1 NC_010117.1 identified by match to protein family HMM PF00529; auxiliary membrane fusion protein family transporter 126698 5793271 COXBURSA331_A0146 Coxiella burnetii RSA 331 auxiliary membrane fusion protein family transporter YP_001596035.1 125718 D 360115 CDS YP_001596036.1 161831241 5793519 126691..127620 1 NC_010117.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 127620 5793519 COXBURSA331_A0147 Coxiella burnetii RSA 331 ABC transporter ATP-binding protein YP_001596036.1 126691 D 360115 CDS YP_001596037.1 161830938 5792706 128798..129358 1 NC_010117.1 putative lipoprotein 129358 5792706 COXBURSA331_A0150 Coxiella burnetii RSA 331 putative lipoprotein YP_001596037.1 128798 D 360115 CDS YP_001596038.1 161831488 5794547 complement(129455..130207) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 130207 5794547 COXBURSA331_A0151 Coxiella burnetii RSA 331 hypothetical protein YP_001596038.1 129455 R 360115 CDS YP_001596039.1 161831286 5793520 complement(130317..130919) 1 NC_010117.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 130919 5793520 COXBURSA331_A0152 Coxiella burnetii RSA 331 putative deoxyribonucleotide triphosphate pyrophosphatase YP_001596039.1 130317 R 360115 CDS YP_001596040.1 161829901 5793522 130982..132007 1 NC_010117.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 132007 hemH 5793522 hemH Coxiella burnetii RSA 331 ferrochelatase YP_001596040.1 130982 D 360115 CDS YP_001596041.1 161831423 5793946 134346..134618 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 134618 5793946 COXBURSA331_A0156 Coxiella burnetii RSA 331 hypothetical protein YP_001596041.1 134346 D 360115 CDS YP_001596042.1 161830920 5793944 complement(134615..135634) 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 135634 5793944 COXBURSA331_A0155 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001596042.1 134615 R 360115 CDS YP_001596043.1 161830094 5794299 135876..136187 1 NC_010117.1 ankyrin repeat-containing protein 136187 5794299 COXBURSA331_A0157 Coxiella burnetii RSA 331 ankyrin repeat-containing protein YP_001596043.1 135876 D 360115 CDS YP_001596044.1 161830634 5794429 136196..137044 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 137044 5794429 COXBURSA331_A0158 Coxiella burnetii RSA 331 hypothetical protein YP_001596044.1 136196 D 360115 CDS YP_001596045.1 161829835 5794011 138075..139274 1 NC_010117.1 ankyrin repeat-containing protein 139274 5794011 COXBURSA331_A0160 Coxiella burnetii RSA 331 ankyrin repeat-containing protein YP_001596045.1 138075 D 360115 CDS YP_001596046.1 161830412 5793561 complement(139364..141157) 1 NC_010117.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321; M24 family peptidase 141157 5793561 COXBURSA331_A0161 Coxiella burnetii RSA 331 M24 family peptidase YP_001596046.1 139364 R 360115 CDS YP_001596047.1 161831472 5793243 141465..142697 1 NC_010117.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01984; match to protein family HMM TIGR01988; 2-polyprenyl-6-methoxyphenol 4-hydroxylase 142697 ubiH 5793243 ubiH Coxiella burnetii RSA 331 2-polyprenyl-6-methoxyphenol 4-hydroxylase YP_001596047.1 141465 D 360115 CDS YP_001596048.1 161830080 5793285 142687..143922 1 NC_010117.1 identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 143922 5793285 COXBURSA331_A0164 Coxiella burnetii RSA 331 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_001596048.1 142687 D 360115 CDS YP_001596049.1 161830168 5794722 144037..144828 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 144828 5794722 COXBURSA331_A0165 Coxiella burnetii RSA 331 hypothetical protein YP_001596049.1 144037 D 360115 CDS YP_001596050.1 161830392 5793697 complement(144863..145012) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 145012 5793697 COXBURSA331_A0166 Coxiella burnetii RSA 331 hypothetical protein YP_001596050.1 144863 R 360115 CDS YP_001596051.1 161829880 5793272 146035..147729 1 NC_010117.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 147729 proS 5793272 proS Coxiella burnetii RSA 331 prolyl-tRNA synthetase YP_001596051.1 146035 D 360115 CDS YP_001596052.1 161830423 5794752 complement(147786..147977) 1 NC_010117.1 putative lipoprotein 147977 5794752 COXBURSA331_A0169 Coxiella burnetii RSA 331 putative lipoprotein YP_001596052.1 147786 R 360115 CDS YP_001596053.1 161830623 5793916 148112..150019 1 NC_010117.1 identified by match to protein family HMM PF00884; sulfatase 150019 5793916 COXBURSA331_A0170 Coxiella burnetii RSA 331 sulfatase YP_001596053.1 148112 D 360115 CDS YP_001596054.1 161830948 5794567 150273..150428 1 NC_010117.1 identified by match to protein family HMM PF08085; entericidin B 150428 ecnB 5794567 ecnB Coxiella burnetii RSA 331 entericidin B YP_001596054.1 150273 D 360115 CDS YP_001596055.1 161829742 5793535 150439..151197 1 NC_010117.1 identified by match to protein family HMM PF04909; amidohydrolase family protein 151197 5793535 COXBURSA331_A0172 Coxiella burnetii RSA 331 amidohydrolase family protein YP_001596055.1 150439 D 360115 CDS YP_001596056.1 161831251 5793615 151239..153155 1 NC_010117.1 identified by match to protein family HMM PF00884; sulfatase 153155 5793615 COXBURSA331_A0173 Coxiella burnetii RSA 331 sulfatase YP_001596056.1 151239 D 360115 CDS YP_001596057.1 161830616 5794613 153324..154145 1 NC_010117.1 identified by match to protein family HMM PF06519; match to protein family HMM TIGR02794; protein TolA 154145 5794613 COXBURSA331_A0174 Coxiella burnetii RSA 331 protein TolA YP_001596057.1 153324 D 360115 CDS YP_001596058.1 161831311 5794625 154965..156278 1 NC_010117.1 identified by match to protein family HMM PF04052; match to protein family HMM PF07676; match to protein family HMM TIGR02800; TolB protein 156278 tolB 5794625 tolB Coxiella burnetii RSA 331 TolB protein YP_001596058.1 154965 D 360115 CDS YP_001596059.1 161831560 5794765 156327..156875 1 NC_010117.1 identified by match to protein family HMM PF00691; putative peptidoglycan-associated lipoprotein 156875 5794765 COXBURSA331_A0176 Coxiella burnetii RSA 331 putative peptidoglycan-associated lipoprotein YP_001596059.1 156327 D 360115 CDS YP_001596060.1 161830946 5794780 156877..157779 1 NC_010117.1 identified by match to protein family HMM PF07719; match to protein family HMM TIGR02795; tol-pal system protein YbgF 157779 ygbF 5794780 ygbF Coxiella burnetii RSA 331 tol-pal system protein YbgF YP_001596060.1 156877 D 360115 CDS YP_001596061.1 161830218 5793088 157782..158423 1 NC_010117.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 158423 5793088 COXBURSA331_A0178 Coxiella burnetii RSA 331 radical SAM domain-containing protein YP_001596061.1 157782 D 360115 CDS YP_001596062.1 161830087 5794753 158736..161315 1 NC_010117.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346; ATP-dependent chaperone ClpB 161315 clpB 5794753 clpB Coxiella burnetii RSA 331 ATP-dependent chaperone ClpB YP_001596062.1 158736 D 360115 CDS YP_001596063.1 161830700 5794904 161318..162280 1 NC_010117.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367; sodium/calcium antiporter family protein 162280 5794904 COXBURSA331_A0181 Coxiella burnetii RSA 331 sodium/calcium antiporter family protein YP_001596063.1 161318 D 360115 CDS YP_001596064.1 161831333 5793531 complement(162264..163439) 1 NC_010117.1 identified by match to protein family HMM PF00614; putative cardiolipin synthetase 163439 5793531 COXBURSA331_A0180 Coxiella burnetii RSA 331 putative cardiolipin synthetase YP_001596064.1 162264 R 360115 CDS YP_001596065.1 161830284 5794004 complement(163439..163723) 1 NC_010117.1 hypothetical protein 163723 5794004 COXBURSA331_A0182 Coxiella burnetii RSA 331 hypothetical protein YP_001596065.1 163439 R 360115 CDS YP_001596066.1 161829758 5793548 163901..164665 1 NC_010117.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase 164665 pssA 5793548 pssA Coxiella burnetii RSA 331 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_001596066.1 163901 D 360115 CDS YP_001596067.1 161831373 5794707 164665..165489 1 NC_010117.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 165489 nadC 5794707 nadC Coxiella burnetii RSA 331 nicotinate-nucleotide pyrophosphorylase YP_001596067.1 164665 D 360115 CDS YP_001596068.1 161830501 5792751 165504..165665 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 165665 5792751 COXBURSA331_A0185 Coxiella burnetii RSA 331 hypothetical protein YP_001596068.1 165504 D 360115 CDS YP_001596069.1 161831186 5793556 166160..166633 1 NC_010117.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR00249; phosphohistidine phosphatase SixA 166633 sixA 5793556 sixA Coxiella burnetii RSA 331 phosphohistidine phosphatase SixA YP_001596069.1 166160 D 360115 CDS YP_001596070.1 161830799 5793762 166635..167036 1 NC_010117.1 putative lipoprotein 167036 5793762 COXBURSA331_A0190 Coxiella burnetii RSA 331 putative lipoprotein YP_001596070.1 166635 D 360115 CDS YP_001596071.1 161830758 5793906 complement(166990..168600) 1 NC_010117.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR00551; L-aspartate oxidase 168600 nadB 5793906 nadB Coxiella burnetii RSA 331 L-aspartate oxidase YP_001596071.1 166990 R 360115 CDS YP_001596072.1 161830599 5794908 complement(168721..168834) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 168834 5794908 COXBURSA331_A0191 Coxiella burnetii RSA 331 hypothetical protein YP_001596072.1 168721 R 360115 CDS YP_001596073.1 161830131 5793292 complement(168869..170311) 1 NC_010117.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; M20/M25/M40 family peptidase 170311 5793292 COXBURSA331_A0192 Coxiella burnetii RSA 331 M20/M25/M40 family peptidase YP_001596073.1 168869 R 360115 CDS YP_001596074.1 161831416 5794448 complement(170389..171102) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 171102 5794448 COXBURSA331_A0193 Coxiella burnetii RSA 331 hypothetical protein YP_001596074.1 170389 R 360115 CDS YP_001596075.1 161830356 5794449 172500..173555 1 NC_010117.1 identified by match to protein family HMM PF00005; D-methionine ABC transporter ATP-binding protein 173555 metN 5794449 metN Coxiella burnetii RSA 331 D-methionine ABC transporter ATP-binding protein YP_001596075.1 172500 D 360115 CDS YP_001596076.1 161829829 5794139 173524..174180 1 NC_010117.1 identified by match to protein family HMM PF00528; D-methionine ABC transporter permease 174180 metI 5794139 metI Coxiella burnetii RSA 331 D-methionine ABC transporter permease YP_001596076.1 173524 D 360115 CDS YP_001596077.1 161831111 5793130 174192..174995 1 NC_010117.1 identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363; D-methionine ABC transporter periplasmic D-methionine-binding protein 174995 metQ 5793130 metQ Coxiella burnetii RSA 331 D-methionine ABC transporter periplasmic D-methionine-binding protein YP_001596077.1 174192 D 360115 CDS YP_001596078.1 161830684 5793681 complement(175006..175356) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 175356 5793681 COXBURSA331_A0198 Coxiella burnetii RSA 331 hypothetical protein YP_001596078.1 175006 R 360115 CDS YP_001596079.1 161830265 5794028 175896..177086 1 NC_010117.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 177086 kbl 5794028 kbl Coxiella burnetii RSA 331 2-amino-3-ketobutyrate coenzyme A ligase YP_001596079.1 175896 D 360115 CDS YP_001596080.1 161830438 5793929 177128..178156 1 NC_010117.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 178156 tdh 5793929 tdh Coxiella burnetii RSA 331 L-threonine 3-dehydrogenase YP_001596080.1 177128 D 360115 CDS YP_001596081.1 161829991 5794716 complement(178192..178404) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 178404 5794716 COXBURSA331_A0202 Coxiella burnetii RSA 331 hypothetical protein YP_001596081.1 178192 R 360115 CDS YP_001596082.1 161831520 5794715 178557..179039 1 NC_010117.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 179039 5794715 COXBURSA331_A0203 Coxiella burnetii RSA 331 putative nucleotide-binding protein YP_001596082.1 178557 D 360115 CDS YP_001596083.1 161831113 5794717 179222..179680 1 NC_010117.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 179680 mraZ 5794717 mraZ Coxiella burnetii RSA 331 cell division protein MraZ YP_001596083.1 179222 D 360115 CDS YP_001596084.1 161830127 5794786 179686..180609 1 NC_010117.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 180609 mraW 5794786 mraW Coxiella burnetii RSA 331 S-adenosyl-methyltransferase MraW YP_001596084.1 179686 D 360115 CDS YP_001596085.1 161829774 5794564 180606..180953 1 NC_010117.1 identified by match to protein family HMM PF04999; match to protein family HMM TIGR02209; cell division protein FtsL 180953 ftsL 5794564 ftsL Coxiella burnetii RSA 331 cell division protein FtsL YP_001596085.1 180606 D 360115 CDS YP_001596086.1 161831306 5793779 180958..182604 1 NC_010117.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 182604 5793779 COXBURSA331_A0207 Coxiella burnetii RSA 331 penicillin-binding protein YP_001596086.1 180958 D 360115 CDS YP_001596087.1 161830981 5794453 complement(182609..183718) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 183718 5794453 COXBURSA331_A0208 Coxiella burnetii RSA 331 hypothetical protein YP_001596087.1 182609 R 360115 CDS YP_001596088.1 161831396 5794782 complement(183715..183828) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 183828 5794782 COXBURSA331_A0209 Coxiella burnetii RSA 331 hypothetical protein YP_001596088.1 183715 R 360115 CDS YP_001596089.1 161831473 5793885 complement(183897..184016) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 184016 5793885 COXBURSA331_A0210 Coxiella burnetii RSA 331 hypothetical protein YP_001596089.1 183897 R 360115 CDS YP_001596090.1 161829791 5794679 complement(184114..184245) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 184245 5794679 COXBURSA331_A0211 Coxiella burnetii RSA 331 hypothetical protein YP_001596090.1 184114 R 360115 CDS YP_001596091.1 161830091 5794785 184257..184535 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 184535 5794785 COXBURSA331_A0212 Coxiella burnetii RSA 331 hypothetical protein YP_001596091.1 184257 D 360115 CDS YP_001596092.1 161830895 5794682 184586..186055 1 NC_010117.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 186055 murE 5794682 murE Coxiella burnetii RSA 331 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001596092.1 184586 D 360115 CDS YP_001596093.1 161831178 5794744 186052..187392 1 NC_010117.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 187392 murF 5794744 murF Coxiella burnetii RSA 331 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_001596093.1 186052 D 360115 CDS YP_001596094.1 161830315 5793341 187397..188482 1 NC_010117.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 188482 mraY 5793341 mraY Coxiella burnetii RSA 331 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001596094.1 187397 D 360115 CDS YP_001596095.1 161830001 5794724 complement(188475..188600) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 188600 5794724 COXBURSA331_A0215 Coxiella burnetii RSA 331 hypothetical protein YP_001596095.1 188475 R 360115 CDS YP_001596096.1 161831189 5794756 188654..188773 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 188773 5794756 COXBURSA331_A0217 Coxiella burnetii RSA 331 hypothetical protein YP_001596096.1 188654 D 360115 CDS YP_001596097.1 161830769 5794757 188856..189836 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 189836 5794757 COXBURSA331_A0218 Coxiella burnetii RSA 331 hypothetical protein YP_001596097.1 188856 D 360115 CDS YP_001596098.1 161830555 5792827 189808..190155 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 190155 5792827 COXBURSA331_A0219 Coxiella burnetii RSA 331 hypothetical protein YP_001596098.1 189808 D 360115 CDS YP_001596099.1 161830535 5793792 190507..191835 1 NC_010117.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 191835 murD 5793792 murD Coxiella burnetii RSA 331 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001596099.1 190507 D 360115 CDS YP_001596100.1 161830873 5792958 191835..192953 1 NC_010117.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; cell division protein FtsW 192953 ftsW 5792958 ftsW Coxiella burnetii RSA 331 cell division protein FtsW YP_001596100.1 191835 D 360115 CDS YP_001596101.1 161831633 5792959 193005..193871 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 193871 5792959 COXBURSA331_A2229 Coxiella burnetii RSA 331 hypothetical protein YP_001596101.1 193005 D 360115 CDS YP_001596102.1 161831522 5794748 193904..194491 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 194491 5794748 COXBURSA331_A0223 Coxiella burnetii RSA 331 hypothetical protein YP_001596102.1 193904 D 360115 CDS YP_001596103.1 161830225 5793275 194541..195617 1 NC_010117.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 195617 murG 5793275 murG Coxiella burnetii RSA 331 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001596103.1 194541 D 360115 CDS YP_001596104.1 161830659 5794899 195604..197001 1 NC_010117.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 197001 murC 5794899 murC Coxiella burnetii RSA 331 UDP-N-acetylmuramate--L-alanine ligase YP_001596104.1 195604 D 360115 CDS YP_001596105.1 161830959 5794884 196994..197944 1 NC_010117.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 197944 murB 5794884 murB Coxiella burnetii RSA 331 UDP-N-acetylenolpyruvoylglucosamine reductase YP_001596105.1 196994 D 360115 CDS YP_001596106.1 161830105 5794700 197944..198675 1 NC_010117.1 identified by match to protein family HMM PF03799; match to protein family HMM PF08478; cell division protein FtsQ 198675 ftsQ 5794700 ftsQ Coxiella burnetii RSA 331 cell division protein FtsQ YP_001596106.1 197944 D 360115 CDS YP_001596107.1 161831392 5794701 complement(198672..199292) 1 NC_010117.1 identified by match to protein family HMM PF00484; carbonate dehydratase 199292 5794701 COXBURSA331_A0227 Coxiella burnetii RSA 331 carbonate dehydratase YP_001596107.1 198672 R 360115 CDS YP_001596108.1 161831291 5794702 199483..200715 1 NC_010117.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 200715 ftsA 5794702 ftsA Coxiella burnetii RSA 331 cell division protein FtsA YP_001596108.1 199483 D 360115 CDS YP_001596109.1 161830929 5794734 200737..201897 1 NC_010117.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 201897 ftsZ 5794734 ftsZ Coxiella burnetii RSA 331 cell division protein FtsZ YP_001596109.1 200737 D 360115 CDS YP_001596110.1 161830130 5794709 202057..202968 1 NC_010117.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 202968 lpxC 5794709 lpxC Coxiella burnetii RSA 331 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_001596110.1 202057 D 360115 CDS YP_001596111.1 161830405 5794712 complement(203577..203978) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 203978 5794712 COXBURSA331_A0233 Coxiella burnetii RSA 331 hypothetical protein YP_001596111.1 203577 R 360115 CDS YP_001596112.1 161829826 5794703 complement(203954..204541) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 204541 5794703 COXBURSA331_A0234 Coxiella burnetii RSA 331 hypothetical protein YP_001596112.1 203954 R 360115 CDS YP_001596113.1 161829916 5794738 complement(204695..204808) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 204808 5794738 COXBURSA331_A0235 Coxiella burnetii RSA 331 hypothetical protein YP_001596113.1 204695 R 360115 CDS YP_001596114.1 161829823 5794861 204995..205252 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 205252 5794861 COXBURSA331_A0236 Coxiella burnetii RSA 331 hypothetical protein YP_001596114.1 204995 D 360115 CDS YP_001596115.1 161831202 5794723 205231..206280 1 NC_010117.1 identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 206280 5794723 COXBURSA331_A0237 Coxiella burnetii RSA 331 ankyrin repeat-containing protein YP_001596115.1 205231 D 360115 CDS YP_001596116.1 161830820 5794725 complement(206332..206634) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 206634 5794725 COXBURSA331_A0238 Coxiella burnetii RSA 331 hypothetical protein YP_001596116.1 206332 R 360115 CDS YP_001596117.1 161830487 5794726 206685..209426 1 NC_010117.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 209426 secA 5794726 secA Coxiella burnetii RSA 331 preprotein translocase subunit SecA YP_001596117.1 206685 D 360115 CDS YP_001596118.1 161831097 5794892 209405..209818 1 NC_010117.1 identified by match to protein family HMM PF00293; mutator mutT protein 209818 mutT 5794892 mutT Coxiella burnetii RSA 331 mutator mutT protein YP_001596118.1 209405 D 360115 CDS YP_001596119.1 161830519 5794729 complement(210186..210962) 1 NC_010117.1 identified by match to protein family HMM PF07072; hypothetical protein 210962 5794729 COXBURSA331_A0242 Coxiella burnetii RSA 331 hypothetical protein YP_001596119.1 210186 R 360115 CDS YP_001596120.1 161831399 5794730 complement(211023..211859) 1 NC_010117.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 211859 queF 5794730 queF Coxiella burnetii RSA 331 7-cyano-7-deazaguanine reductase YP_001596120.1 211023 R 360115 CDS YP_001596121.1 161829755 5794706 complement(211880..212479) 1 NC_010117.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 212479 coaE 5794706 coaE Coxiella burnetii RSA 331 dephospho-CoA kinase YP_001596121.1 211880 R 360115 CDS YP_001596122.1 161830282 5794739 complement(212490..213350) 1 NC_010117.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750; type 4 prepilin peptidase PilD 213350 pilD 5794739 pilD Coxiella burnetii RSA 331 type 4 prepilin peptidase PilD YP_001596122.1 212490 R 360115 CDS YP_001596123.1 161830293 5794740 complement(213376..214431) 1 NC_010117.1 identified by match to protein family HMM PF00482; type IV-A pilus assembly protein PilC 214431 pilC 5794740 pilC Coxiella burnetii RSA 331 type IV-A pilus assembly protein PilC YP_001596123.1 213376 R 360115 CDS YP_001596124.1 161831205 5794741 complement(214424..215974) 1 NC_010117.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157; type IV-A pilus assembly protein PilB 215974 pilB 5794741 pilB Coxiella burnetii RSA 331 type IV-A pilus assembly protein PilB YP_001596124.1 214424 R 360115 CDS YP_001596125.1 161829924 5794742 complement(215964..216386) 1 NC_010117.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; type IV-A pilin protein PilA 216386 pilA 5794742 pilA Coxiella burnetii RSA 331 type IV-A pilin protein PilA YP_001596125.1 215964 R 360115 CDS YP_001596126.1 161830350 5794737 complement(216634..216795) 1 NC_010117.1 hypothetical protein 216795 5794737 COXBURSA331_A0250 Coxiella burnetii RSA 331 hypothetical protein YP_001596126.1 216634 R 360115 CDS YP_001596127.1 161830740 5794759 complement(217036..217593) 1 NC_010117.1 identified by match to protein family HMM TIGR02563; CRISPR-associated Csy4 family protein 217593 csy4_2 5794759 csy4_2 Coxiella burnetii RSA 331 CRISPR-associated Csy4 family protein YP_001596127.1 217036 R 360115 CDS YP_001596128.1 161831385 5794713 complement(217602..218672) 1 NC_010117.1 identified by match to protein family HMM TIGR02566; CRISPR-associated Csy3 family protein 218672 csy3_2 5794713 csy3_2 Coxiella burnetii RSA 331 CRISPR-associated Csy3 family protein YP_001596128.1 217602 R 360115 CDS YP_001596129.1 161831585 5794775 complement(225692..226207) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 226207 5794775 COXBURSA331_A0257 Coxiella burnetii RSA 331 hypothetical protein YP_001596129.1 225692 R 360115 CDS YP_001596130.1 161829714 5794727 227744..228022 1 NC_010117.1 Acyl carrier proteins are involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; this ACP may be involved in the biosynthesis of lipopeptide antibiotics; acyl carrier protein 228022 5794727 COXBURSA331_A0261 Coxiella burnetii RSA 331 acyl carrier protein YP_001596130.1 227744 D 360115 CDS YP_001596131.1 161830840 5794728 228022..228525 1 NC_010117.1 identified by similarity to GB:AAO17441.1; hypothetical protein 228525 5794728 COXBURSA331_A0262 Coxiella burnetii RSA 331 hypothetical protein YP_001596131.1 228022 D 360115 CDS YP_001596132.1 161831626 5794763 complement(229643..230095) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 230095 5794763 COXBURSA331_A0263 Coxiella burnetii RSA 331 hypothetical protein YP_001596132.1 229643 R 360115 CDS YP_001596133.1 161831005 5794893 complement(230212..230661) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 230661 5794893 COXBURSA331_A0264 Coxiella burnetii RSA 331 hypothetical protein YP_001596133.1 230212 R 360115 CDS YP_001596134.1 161830586 5794891 230798..231538 1 NC_010117.1 serine/threonine-protein kinase pkn2 231538 pkn2 5794891 pkn2 Coxiella burnetii RSA 331 serine/threonine-protein kinase pkn2 YP_001596134.1 230798 D 360115 CDS YP_001596135.1 161830376 5794774 231603..232790 1 NC_010117.1 identified by match to protein family HMM PF00089; trypsin domain-containing protein 232790 5794774 COXBURSA331_A0266 Coxiella burnetii RSA 331 trypsin domain-containing protein YP_001596135.1 231603 D 360115 CDS YP_001596136.1 161831505 5794515 complement(232799..234379) 1 NC_010117.1 identified by match to protein family HMM PF00528; match to protein family HMM PF02790; match to protein family HMM PF04069; quaternary amine ABC transporter substrate-binding protein 234379 5794515 COXBURSA331_A0267 Coxiella burnetii RSA 331 quaternary amine ABC transporter substrate-binding protein YP_001596136.1 232799 R 360115 CDS YP_001596137.1 161831225 5794058 complement(234376..235134) 1 NC_010117.1 identified by match to protein family HMM PF00005; quaternary amine ABC transporter ATP-binding protein 235134 5794058 COXBURSA331_A0268 Coxiella burnetii RSA 331 quaternary amine ABC transporter ATP-binding protein YP_001596137.1 234376 R 360115 CDS YP_001596138.1 161829941 5792784 complement(235181..236299) 1 NC_010117.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 236299 anmK 5792784 anmK Coxiella burnetii RSA 331 anhydro-N-acetylmuramic acid kinase YP_001596138.1 235181 R 360115 CDS YP_001596139.1 161830632 5794519 complement(236303..237574) 1 NC_010117.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551; M23 peptidase domain-containing protein 237574 5794519 COXBURSA331_A0270 Coxiella burnetii RSA 331 M23 peptidase domain-containing protein YP_001596139.1 236303 R 360115 CDS YP_001596140.1 161831069 5794525 237685..238884 1 NC_010117.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 238884 tyrS 5794525 tyrS Coxiella burnetii RSA 331 tyrosyl-tRNA synthetase YP_001596140.1 237685 D 360115 CDS YP_001596141.1 161831317 5794541 239315..239416 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 239416 5794541 COXBURSA331_A0272 Coxiella burnetii RSA 331 hypothetical protein YP_001596141.1 239315 D 360115 CDS YP_001596142.1 161831474 5794688 complement(240902..241093) 1 NC_010117.1 identified by similarity to GB:CAJ30044.1; hypothetical protein 241093 5794688 COXBURSA331_A0274 Coxiella burnetii RSA 331 hypothetical protein YP_001596142.1 240902 R 360115 CDS YP_001596143.1 161830425 5794508 242743..243129 1 NC_010117.1 crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; hypothetical protein 243129 5794508 COXBURSA331_A2230 Coxiella burnetii RSA 331 hypothetical protein YP_001596143.1 242743 D 360115 CDS YP_001596144.1 161830602 5794526 244434..244922 1 NC_010117.1 identified by similarity to GB:AAO89742.1; match to protein family HMM PF00961; homing endonuclease/LAGLIDADG family 23S rRNA group I intron 244922 5794526 COXBURSA331_A2231 Coxiella burnetii RSA 331 homing endonuclease/LAGLIDADG family 23S rRNA group I intron YP_001596144.1 244434 D 360115 CDS YP_001596145.1 161829843 5794565 246232..246504 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 246504 5794565 COXBURSA331_A0280 Coxiella burnetii RSA 331 hypothetical protein YP_001596145.1 246232 D 360115 CDS YP_001596146.1 161831003 5794539 complement(251116..251208) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 251208 5794539 COXBURSA331_A0285 Coxiella burnetii RSA 331 hypothetical protein YP_001596146.1 251116 R 360115 CDS YP_001596147.1 161830542 5794577 252604..253749 1 NC_010117.1 hypothetical protein 253749 5794577 COXBURSA331_A0287 Coxiella burnetii RSA 331 hypothetical protein YP_001596147.1 252604 D 360115 CDS YP_001596148.1 161830831 5794812 complement(253777..255144) 1 NC_010117.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 255144 sdaA 5794812 sdaA Coxiella burnetii RSA 331 L-serine ammonia-lyase YP_001596148.1 253777 R 360115 CDS YP_001596149.1 161831358 5794552 255325..256626 1 NC_010117.1 identified by match to protein family HMM PF07690; AmpG protein 256626 ampG 5794552 ampG Coxiella burnetii RSA 331 AmpG protein YP_001596149.1 255325 D 360115 CDS YP_001596150.1 161829704 5794554 256713..256925 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 256925 5794554 COXBURSA331_A0290 Coxiella burnetii RSA 331 hypothetical protein YP_001596150.1 256713 D 360115 CDS YP_001596151.1 161830692 5794550 complement(256995..259784) 1 NC_010117.1 identified by match to protein family HMM PF04357; hypothetical protein 259784 5794550 COXBURSA331_A0291 Coxiella burnetii RSA 331 hypothetical protein YP_001596151.1 256995 R 360115 CDS YP_001596152.1 161831249 5794558 complement(259781..261517) 1 NC_010117.1 identified by match to protein family HMM PF01103; outer membrane protein, OMP85 family protein 261517 5794558 COXBURSA331_A0292 Coxiella burnetii RSA 331 outer membrane protein, OMP85 family protein YP_001596152.1 259781 R 360115 CDS YP_001596153.1 161831545 5794560 261561..261674 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 261674 5794560 COXBURSA331_A0293 Coxiella burnetii RSA 331 hypothetical protein YP_001596153.1 261561 D 360115 CDS YP_001596154.1 161830107 5794549 261658..262614 1 NC_010117.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 262614 coaA 5794549 coaA Coxiella burnetii RSA 331 pantothenate kinase YP_001596154.1 261658 D 360115 CDS YP_001596155.1 161831103 5794561 262615..263502 1 NC_010117.1 identified by match to protein family HMM PF01263; aldose 1-epimerase family protein 263502 5794561 COXBURSA331_A0295 Coxiella burnetii RSA 331 aldose 1-epimerase family protein YP_001596155.1 262615 D 360115 CDS YP_001596156.1 161831410 5794585 complement(263583..263978) 1 NC_010117.1 identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 263978 5794585 COXBURSA331_A0296 Coxiella burnetii RSA 331 ankyrin repeat-containing protein YP_001596156.1 263583 R 360115 CDS YP_001596157.1 161829756 5794566 264892..266301 1 NC_010117.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 266301 gltX 5794566 gltX Coxiella burnetii RSA 331 glutamyl-tRNA synthetase YP_001596157.1 264892 D 360115 CDS YP_001596158.1 161830508 5794530 266363..266755 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 266755 5794530 COXBURSA331_A0299 Coxiella burnetii RSA 331 hypothetical protein YP_001596158.1 266363 D 360115 CDS YP_001596159.1 161830818 5794568 267035..267310 1 NC_010117.1 hypothetical protein 267310 5794568 COXBURSA331_A0301 Coxiella burnetii RSA 331 hypothetical protein YP_001596159.1 267035 D 360115 CDS YP_001596160.1 161830276 5794573 268565..269545 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 269545 5794573 COXBURSA331_A0304 Coxiella burnetii RSA 331 hypothetical protein YP_001596160.1 268565 D 360115 CDS YP_001596161.1 161830268 5794571 269524..269661 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 269661 5794571 COXBURSA331_A0305 Coxiella burnetii RSA 331 hypothetical protein YP_001596161.1 269524 D 360115 CDS YP_001596162.1 161830713 5794559 complement(271320..271454) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 271454 5794559 COXBURSA331_A0307 Coxiella burnetii RSA 331 hypothetical protein YP_001596162.1 271320 R 360115 CDS YP_001596163.1 161831282 5794553 271845..272564 1 NC_010117.1 identified by match to protein family HMM PF01027; hypothetical protein 272564 5794553 COXBURSA331_A0308 Coxiella burnetii RSA 331 hypothetical protein YP_001596163.1 271845 D 360115 CDS YP_001596164.1 161829708 5794584 276073..277623 1 NC_010117.1 identified by match to protein family HMM PF01654; cytochrome d ubiquinol oxidase, subunit I 277623 cydA2 5794584 cydA2 Coxiella burnetii RSA 331 cytochrome d ubiquinol oxidase, subunit I YP_001596164.1 276073 D 360115 CDS YP_001596165.1 161830270 5794569 278783..278902 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 278902 5794569 COXBURSA331_A0313 Coxiella burnetii RSA 331 hypothetical protein YP_001596165.1 278783 D 360115 CDS YP_001596166.1 161830550 5794612 278895..279626 1 NC_010117.1 identified by match to protein family HMM PF01648; match to protein family HMM TIGR00556; phosphopantetheinyl transferase 279626 mtaA 5794612 mtaA Coxiella burnetii RSA 331 phosphopantetheinyl transferase YP_001596166.1 278895 D 360115 CDS YP_001596167.1 161830006 5794546 279895..280011 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 280011 5794546 COXBURSA331_A0316 Coxiella burnetii RSA 331 hypothetical protein YP_001596167.1 279895 D 360115 CDS YP_001596168.1 161829727 5794621 280213..281406 1 NC_010117.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 281406 tuf1 5794621 tuf1 Coxiella burnetii RSA 331 elongation factor Tu YP_001596168.1 280213 D 360115 CDS YP_001596169.1 161831611 5794595 281651..282034 1 NC_010117.1 identified by match to protein family HMM PF00584; match to protein family HMM TIGR00964; Preprotein translocase subunit SecE 282034 secE 5794595 secE Coxiella burnetii RSA 331 Preprotein translocase subunit SecE YP_001596169.1 281651 D 360115 CDS YP_001596170.1 161830723 5794629 282104..282625 1 NC_010117.1 identified by match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922; transcription termination/antitermination factor NusG 282625 nusG 5794629 nusG Coxiella burnetii RSA 331 transcription termination/antitermination factor NusG YP_001596170.1 282104 D 360115 CDS YP_001596171.1 161831381 5794599 282750..283187 1 NC_010117.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 283187 rplK 5794599 rplK Coxiella burnetii RSA 331 50S ribosomal protein L11 YP_001596171.1 282750 D 360115 CDS YP_001596172.1 161829975 5794602 283187..283885 1 NC_010117.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 283885 rplA 5794602 rplA Coxiella burnetii RSA 331 50S ribosomal protein L1 YP_001596172.1 283187 D 360115 CDS YP_001596173.1 161830516 5794632 284139..284663 1 NC_010117.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 284663 rplJ 5794632 rplJ Coxiella burnetii RSA 331 50S ribosomal protein L10 YP_001596173.1 284139 D 360115 CDS YP_001596174.1 161831485 5794605 284697..285077 1 NC_010117.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 285077 rplL 5794605 rplL Coxiella burnetii RSA 331 50S ribosomal protein L7/L12 YP_001596174.1 284697 D 360115 CDS YP_001596175.1 161831303 5794638 285230..289357 1 NC_010117.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 289357 rpoB 5794638 rpoB Coxiella burnetii RSA 331 DNA-directed RNA polymerase subunit beta YP_001596175.1 285230 D 360115 CDS YP_001596176.1 161831375 5794610 complement(289304..289555) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 289555 5794610 COXBURSA331_A0327 Coxiella burnetii RSA 331 hypothetical protein YP_001596176.1 289304 R 360115 CDS YP_001596177.1 161829737 5794644 289625..293869 1 NC_010117.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 293869 rpoC 5794644 rpoC Coxiella burnetii RSA 331 DNA-directed RNA polymerase subunit beta' YP_001596177.1 289625 D 360115 CDS YP_001596178.1 161831264 5794589 294054..294326 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 294326 5794589 COXBURSA331_A0331 Coxiella burnetii RSA 331 hypothetical protein YP_001596178.1 294054 D 360115 CDS YP_001596179.1 161830278 5794617 complement(294323..295342) 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 295342 5794617 COXBURSA331_A0330 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001596179.1 294323 R 360115 CDS YP_001596180.1 161830075 5794593 295585..295959 1 NC_010117.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 295959 rpsL 5794593 rpsL Coxiella burnetii RSA 331 30S ribosomal protein S12 YP_001596180.1 295585 D 360115 CDS YP_001596181.1 161830790 5794611 295972..296547 1 NC_010117.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 296547 rpsG 5794611 rpsG Coxiella burnetii RSA 331 30S ribosomal protein S7 YP_001596181.1 295972 D 360115 CDS YP_001596182.1 161830353 5794597 296557..298656 1 NC_010117.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 298656 fusA 5794597 fusA Coxiella burnetii RSA 331 elongation factor G YP_001596182.1 296557 D 360115 CDS YP_001596183.1 161829893 5794594 298672..299865 1 NC_010117.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 299865 tuf2 5794594 tuf2 Coxiella burnetii RSA 331 elongation factor Tu YP_001596183.1 298672 D 360115 CDS YP_001596184.1 161830951 5794651 300055..300387 1 NC_010117.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 300387 rpsJ 5794651 rpsJ Coxiella burnetii RSA 331 30S ribosomal protein S10 YP_001596184.1 300055 D 360115 CDS YP_001596185.1 161830671 5794601 300409..301062 1 NC_010117.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 301062 rplC 5794601 rplC Coxiella burnetii RSA 331 50S ribosomal protein L3 YP_001596185.1 300409 D 360115 CDS YP_001596186.1 161830071 5794630 301062..301679 1 NC_010117.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 301679 rplD 5794630 rplD Coxiella burnetii RSA 331 50S ribosomal protein L4 YP_001596186.1 301062 D 360115 CDS YP_001596187.1 161831257 5794604 301676..301963 1 NC_010117.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 301963 rplW 5794604 rplW Coxiella burnetii RSA 331 50S ribosomal protein L23 YP_001596187.1 301676 D 360115 CDS YP_001596188.1 161830690 5794624 301983..302810 1 NC_010117.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 302810 rplB 5794624 rplB Coxiella burnetii RSA 331 50S ribosomal protein L2 YP_001596188.1 301983 D 360115 CDS YP_001596189.1 161831275 5794633 302823..303110 1 NC_010117.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 303110 rpsS 5794633 rpsS Coxiella burnetii RSA 331 30S ribosomal protein S19 YP_001596189.1 302823 D 360115 CDS YP_001596190.1 161830730 5794830 303110..303457 1 NC_010117.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 303457 rplV 5794830 rplV Coxiella burnetii RSA 331 50S ribosomal protein L22 YP_001596190.1 303110 D 360115 CDS YP_001596191.1 161830479 5794636 303457..304140 1 NC_010117.1 identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009; 30S ribosomal protein S3 304140 rpsC 5794636 rpsC Coxiella burnetii RSA 331 30S ribosomal protein S3 YP_001596191.1 303457 D 360115 CDS YP_001596192.1 161830912 5794607 304152..304565 1 NC_010117.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 304565 rplP 5794607 rplP Coxiella burnetii RSA 331 50S ribosomal protein L16 YP_001596192.1 304152 D 360115 CDS YP_001596193.1 161831531 5794653 304566..304763 1 NC_010117.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 304763 rpmC 5794653 rpmC Coxiella burnetii RSA 331 50S ribosomal protein L29 YP_001596193.1 304566 D 360115 CDS YP_001596194.1 161830013 5794635 304756..305025 1 NC_010117.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 305025 rpsQ 5794635 rpsQ Coxiella burnetii RSA 331 30S ribosomal protein S17 YP_001596194.1 304756 D 360115 CDS YP_001596195.1 161830872 5794637 305036..305404 1 NC_010117.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 305404 rplN 5794637 rplN Coxiella burnetii RSA 331 50S ribosomal protein L14 YP_001596195.1 305036 D 360115 CDS YP_001596196.1 161831378 5794614 305416..305739 1 NC_010117.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 305739 rplX 5794614 rplX Coxiella burnetii RSA 331 50S ribosomal protein L24 YP_001596196.1 305416 D 360115 CDS YP_001596197.1 161829707 5794667 305856..306404 1 NC_010117.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 306404 rplE 5794667 rplE Coxiella burnetii RSA 331 50S ribosomal protein L5 YP_001596197.1 305856 D 360115 CDS YP_001596198.1 161830300 5794646 306409..306708 1 NC_010117.1 identified by match to protein family HMM PF00253; 30S ribosomal protein S14 306708 rpsN 5794646 rpsN Coxiella burnetii RSA 331 30S ribosomal protein S14 YP_001596198.1 306409 D 360115 CDS YP_001596199.1 161829997 5794618 306711..307103 1 NC_010117.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 307103 rpsH 5794618 rpsH Coxiella burnetii RSA 331 30S ribosomal protein S8 YP_001596199.1 306711 D 360115 CDS YP_001596200.1 161830582 5794640 307141..307677 1 NC_010117.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 307677 rplF 5794640 rplF Coxiella burnetii RSA 331 50S ribosomal protein L6 YP_001596200.1 307141 D 360115 CDS YP_001596201.1 161829952 5794887 307677..308030 1 NC_010117.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 308030 rplR 5794887 rplR Coxiella burnetii RSA 331 50S ribosomal protein L18 YP_001596201.1 307677 D 360115 CDS YP_001596202.1 161830486 5794623 308042..308548 1 NC_010117.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 308548 rpsE 5794623 rpsE Coxiella burnetii RSA 331 30S ribosomal protein S5 YP_001596202.1 308042 D 360115 CDS YP_001596203.1 161831151 5794648 308552..308743 1 NC_010117.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 308743 rpmD 5794648 rpmD Coxiella burnetii RSA 331 50S ribosomal protein L30 YP_001596203.1 308552 D 360115 CDS YP_001596204.1 161831577 5794647 308746..309177 1 NC_010117.1 late assembly protein; 50S ribosomal protein L15 309177 rplO 5794647 rplO Coxiella burnetii RSA 331 50S ribosomal protein L15 YP_001596204.1 308746 D 360115 CDS YP_001596205.1 161829790 5794649 309195..310523 1 NC_010117.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 310523 secY 5794649 secY Coxiella burnetii RSA 331 preprotein translocase subunit SecY YP_001596205.1 309195 D 360115 CDS YP_001596206.1 161831427 5794634 310536..310658 1 NC_010117.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 310658 rpmJ 5794634 rpmJ Coxiella burnetii RSA 331 50S ribosomal protein L36 YP_001596206.1 310536 D 360115 CDS YP_001596207.1 161830195 5794654 310898..311257 1 NC_010117.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 311257 rpsM 5794654 rpsM Coxiella burnetii RSA 331 30S ribosomal protein S13 YP_001596207.1 310898 D 360115 CDS YP_001596208.1 161830869 5794650 311285..311656 1 NC_010117.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 311656 rpsK 5794650 rpsK Coxiella burnetii RSA 331 30S ribosomal protein S11 YP_001596208.1 311285 D 360115 CDS YP_001596209.1 161831288 5794686 311669..312289 1 NC_010117.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 312289 rpsD 5794686 rpsD Coxiella burnetii RSA 331 30S ribosomal protein S4 YP_001596209.1 311669 D 360115 CDS YP_001596210.1 161830881 5794692 312302..313285 1 NC_010117.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 313285 rpoA 5794692 rpoA Coxiella burnetii RSA 331 DNA-directed RNA polymerase subunit alpha YP_001596210.1 312302 D 360115 CDS YP_001596211.1 161831316 5794670 313297..313677 1 NC_010117.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 313677 rplQ 5794670 rplQ Coxiella burnetii RSA 331 50S ribosomal protein L17 YP_001596211.1 313297 D 360115 CDS YP_001596212.1 161830118 5794657 313680..314906 1 NC_010117.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR01272; glucose/galactose transporter family protein 314906 5794657 COXBURSA331_A0364 Coxiella burnetii RSA 331 glucose/galactose transporter family protein YP_001596212.1 313680 D 360115 CDS YP_001596213.1 161830641 5794689 314993..315109 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 315109 5794689 COXBURSA331_A0365 Coxiella burnetii RSA 331 hypothetical protein YP_001596213.1 314993 D 360115 CDS YP_001596214.1 161830732 5794675 315163..315399 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 315399 5794675 COXBURSA331_A0366 Coxiella burnetii RSA 331 hypothetical protein YP_001596214.1 315163 D 360115 CDS YP_001596215.1 161831236 5794643 315429..316091 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 316091 5794643 COXBURSA331_A0367 Coxiella burnetii RSA 331 hypothetical protein YP_001596215.1 315429 D 360115 CDS YP_001596216.1 161830436 5794659 316064..316282 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 316282 5794659 COXBURSA331_A0368 Coxiella burnetii RSA 331 hypothetical protein YP_001596216.1 316064 D 360115 CDS YP_001596217.1 161830716 5794678 316431..317651 1 NC_010117.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 317651 5794678 COXBURSA331_A0369 Coxiella burnetii RSA 331 trans-2-enoyl-CoA reductase YP_001596217.1 316431 D 360115 CDS YP_001596218.1 161831024 5794685 complement(317663..318139) 1 NC_010117.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-stranded DNA-binding protein 318139 ssb 5794685 ssb Coxiella burnetii RSA 331 single-stranded DNA-binding protein YP_001596218.1 317663 R 360115 CDS YP_001596219.1 161829862 5794656 complement(318189..319565) 1 NC_010117.1 identified by match to protein family HMM PF07690; major facilitator family transporter 319565 5794656 COXBURSA331_A0371 Coxiella burnetii RSA 331 major facilitator family transporter YP_001596219.1 318189 R 360115 CDS YP_001596220.1 161831528 5794684 complement(319650..320396) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 320396 5794684 COXBURSA331_A0372 Coxiella burnetii RSA 331 hypothetical protein YP_001596220.1 319650 R 360115 CDS YP_001596221.1 161831163 5794708 320564..320836 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 320836 5794708 COXBURSA331_A0374 Coxiella burnetii RSA 331 hypothetical protein YP_001596221.1 320564 D 360115 CDS YP_001596222.1 161830172 5794714 322021..324885 1 NC_010117.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630; excinuclease ABC subunit A 324885 uvrA 5794714 uvrA Coxiella burnetii RSA 331 excinuclease ABC subunit A YP_001596222.1 322021 D 360115 CDS YP_001596223.1 161831476 5794690 complement(324967..325131) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 325131 5794690 COXBURSA331_A0376 Coxiella burnetii RSA 331 hypothetical protein YP_001596223.1 324967 R 360115 CDS YP_001596224.1 161831037 5794665 325195..326280 1 NC_010117.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 326280 hemE 5794665 hemE Coxiella burnetii RSA 331 uroporphyrinogen decarboxylase YP_001596224.1 325195 D 360115 CDS YP_001596225.1 161830362 5794697 326249..327400 1 NC_010117.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 327400 5794697 COXBURSA331_A0379 Coxiella burnetii RSA 331 pyridine nucleotide-disulfide oxidoreductase YP_001596225.1 326249 D 360115 CDS YP_001596226.1 161829919 5794691 complement(327368..327553) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 327553 5794691 COXBURSA331_A0378 Coxiella burnetii RSA 331 hypothetical protein YP_001596226.1 327368 R 360115 CDS YP_001596227.1 161829927 5794695 complement(327453..327605) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 327605 5794695 COXBURSA331_A0380 Coxiella burnetii RSA 331 hypothetical protein YP_001596227.1 327453 R 360115 CDS YP_001596228.1 161831208 5794664 327653..328246 1 NC_010117.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; MarC membrane protein 328246 5794664 COXBURSA331_A0381 Coxiella burnetii RSA 331 MarC membrane protein YP_001596228.1 327653 D 360115 CDS YP_001596229.1 161829931 5794694 complement(328270..329097) 1 NC_010117.1 identified by match to protein family HMM PF02274; amidinotransferase family protein 329097 5794694 COXBURSA331_A0382 Coxiella burnetii RSA 331 amidinotransferase family protein YP_001596229.1 328270 R 360115 CDS YP_001596230.1 161831206 5794698 329204..330277 1 NC_010117.1 identified by match to protein family HMM PF00817; ImpB/MucB/SamB family protein 330277 5794698 COXBURSA331_A0383 Coxiella burnetii RSA 331 ImpB/MucB/SamB family protein YP_001596230.1 329204 D 360115 CDS YP_001596231.1 161830607 5794496 330348..330893 1 NC_010117.1 identified by match to protein family HMM PF00199; catalase 330893 5794496 COXBURSA331_A0385 Coxiella burnetii RSA 331 catalase YP_001596231.1 330348 D 360115 CDS YP_001596232.1 161831055 5794478 complement(330684..331169) 1 NC_010117.1 hypothetical protein 331169 5794478 COXBURSA331_A0384 Coxiella burnetii RSA 331 hypothetical protein YP_001596232.1 330684 R 360115 CDS YP_001596233.1 161831150 5794471 331397..331537 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 331537 5794471 COXBURSA331_A0386 Coxiella burnetii RSA 331 hypothetical protein YP_001596233.1 331397 D 360115 CDS YP_001596234.1 161831438 5794461 331525..331752 1 NC_010117.1 identified by match to protein family HMM PF05973; prophage protein gp49 331752 5794461 COXBURSA331_A0387 Coxiella burnetii RSA 331 prophage protein gp49 YP_001596234.1 331525 D 360115 CDS YP_001596235.1 161830031 5794460 331756..332076 1 NC_010117.1 hypothetical protein 332076 5794460 COXBURSA331_A0388 Coxiella burnetii RSA 331 hypothetical protein YP_001596235.1 331756 D 360115 CDS YP_001596236.1 161829839 5794361 332308..333627 1 NC_010117.1 identified by match to protein family HMM PF01743; match to protein family HMM TIGR01942; poly(A) polymerase 333627 pcnB 5794361 pcnB Coxiella burnetii RSA 331 poly(A) polymerase YP_001596236.1 332308 D 360115 CDS YP_001596237.1 161831285 5794297 333624..334184 1 NC_010117.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 334184 folK 5794297 folK Coxiella burnetii RSA 331 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001596237.1 333624 D 360115 CDS YP_001596238.1 161830002 5794111 334181..334660 1 NC_010117.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 334660 coaD 5794111 coaD Coxiella burnetii RSA 331 phosphopantetheine adenylyltransferase YP_001596238.1 334181 D 360115 CDS YP_001596239.1 161830643 5793472 334675..334920 1 NC_010117.1 identified by match to protein family HMM PF00037; ferredoxin 334920 5793472 COXBURSA331_A0393 Coxiella burnetii RSA 331 ferredoxin YP_001596239.1 334675 D 360115 CDS YP_001596240.1 161830969 5794014 complement(334934..335146) 1 NC_010117.1 identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023; 50S ribosomal protein L33 335146 rpmG 5794014 rpmG Coxiella burnetii RSA 331 50S ribosomal protein L33 YP_001596240.1 334934 R 360115 CDS YP_001596241.1 161830851 5793984 complement(335157..335396) 1 NC_010117.1 required for 70S ribosome assembly; 50S ribosomal protein L28 335396 rpmB 5793984 rpmB Coxiella burnetii RSA 331 50S ribosomal protein L28 YP_001596241.1 335157 R 360115 CDS YP_001596242.1 161830691 5793920 complement(335347..335493) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 335493 5793920 COXBURSA331_A0396 Coxiella burnetii RSA 331 hypothetical protein YP_001596242.1 335347 R 360115 CDS YP_001596243.1 161831512 5793843 336427..336885 1 NC_010117.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 336885 dut 5793843 dut Coxiella burnetii RSA 331 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_001596243.1 336427 D 360115 CDS YP_001596244.1 161831294 5793814 336863..338278 1 NC_010117.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 338278 algC 5793814 algC Coxiella burnetii RSA 331 phosphomannomutase YP_001596244.1 336863 D 360115 CDS YP_001596245.1 161831554 5793641 complement(339739..340368) 1 NC_010117.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 340368 pyrE 5793641 pyrE Coxiella burnetii RSA 331 orotate phosphoribosyltransferase YP_001596245.1 339739 R 360115 CDS YP_001596246.1 161831527 5793596 340414..341193 1 NC_010117.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 341193 xth 5793596 xth Coxiella burnetii RSA 331 exodeoxyribonuclease III YP_001596246.1 340414 D 360115 CDS YP_001596247.1 161830181 5793501 complement(341449..342291) 1 NC_010117.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00067; glutamate racemase 342291 murI 5793501 murI Coxiella burnetii RSA 331 glutamate racemase YP_001596247.1 341449 R 360115 CDS YP_001596248.1 161829800 5793347 complement(342291..343004) 1 NC_010117.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 343004 rph 5793347 rph Coxiella burnetii RSA 331 ribonuclease PH YP_001596248.1 342291 R 360115 CDS YP_001596249.1 161831552 5792880 343148..344011 1 NC_010117.1 identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255; hypothetical protein 344011 yicC 5792880 yicC Coxiella burnetii RSA 331 hypothetical protein YP_001596249.1 343148 D 360115 CDS YP_001596250.1 161830919 5793317 344004..344624 1 NC_010117.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 344624 gmk 5793317 gmk Coxiella burnetii RSA 331 guanylate kinase YP_001596250.1 344004 D 360115 CDS YP_001596251.1 161830216 5793305 344699..344992 1 NC_010117.1 identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690; DNA-directed RNA polymerase subunit omega 344992 rpoZ 5793305 rpoZ Coxiella burnetii RSA 331 DNA-directed RNA polymerase subunit omega YP_001596251.1 344699 D 360115 CDS YP_001596252.1 161831397 5793302 345046..347169 1 NC_010117.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase 347169 spoT 5793302 spoT Coxiella burnetii RSA 331 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase YP_001596252.1 345046 D 360115 CDS YP_001596253.1 161830857 5793582 347260..347643 1 NC_010117.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; putative endoribonuclease L-PSP 347643 5793582 COXBURSA331_A0410 Coxiella burnetii RSA 331 putative endoribonuclease L-PSP YP_001596253.1 347260 D 360115 CDS YP_001596254.1 161830062 5793135 347650..349764 1 NC_010117.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 349764 recG 5793135 recG Coxiella burnetii RSA 331 ATP-dependent DNA helicase RecG YP_001596254.1 347650 D 360115 CDS YP_001596255.1 161829744 5793129 350045..350164 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 350164 5793129 COXBURSA331_A0412 Coxiella burnetii RSA 331 hypothetical protein YP_001596255.1 350045 D 360115 CDS YP_001596256.1 161831470 5793435 350164..350859 1 NC_010117.1 identified by match to protein family HMM PF01389; outer membrane protein 350859 5793435 COXBURSA331_A0413 Coxiella burnetii RSA 331 outer membrane protein YP_001596256.1 350164 D 360115 CDS YP_001596257.1 161830639 5792931 complement(350947..351075) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 351075 5792931 COXBURSA331_A0414 Coxiella burnetii RSA 331 hypothetical protein YP_001596257.1 350947 R 360115 CDS YP_001596258.1 161829734 5793715 complement(351050..351274) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 351274 5793715 COXBURSA331_A0415 Coxiella burnetii RSA 331 hypothetical protein YP_001596258.1 351050 R 360115 CDS YP_001596259.1 161830498 5792807 351277..353178 1 NC_010117.1 molecular chaperone; heat shock protein 90 353178 htpG 5792807 htpG Coxiella burnetii RSA 331 heat shock protein 90 YP_001596259.1 351277 D 360115 CDS YP_001596260.1 161830245 5792726 complement(353350..353466) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 353466 5792726 COXBURSA331_A0417 Coxiella burnetii RSA 331 hypothetical protein YP_001596260.1 353350 R 360115 CDS YP_001596261.1 161829720 5792864 353441..354199 1 NC_010117.1 identified by similarity to GB:AAM03442.1; hypothetical protein 354199 5792864 COXBURSA331_A0418 Coxiella burnetii RSA 331 hypothetical protein YP_001596261.1 353441 D 360115 CDS YP_001596262.1 161831344 5792687 complement(354358..355209) 1 NC_010117.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 355209 folD 5792687 folD Coxiella burnetii RSA 331 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001596262.1 354358 R 360115 CDS YP_001596263.1 161830832 5793481 complement(355907..357370) 1 NC_010117.1 identified by match to protein family HMM PF01464; match to protein family HMM PF01476; Slt family transglycosylase 357370 5793481 COXBURSA331_A0420 Coxiella burnetii RSA 331 Slt family transglycosylase YP_001596263.1 355907 R 360115 CDS YP_001596264.1 161831446 5793608 complement(357425..357553) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 357553 5793608 COXBURSA331_A0421 Coxiella burnetii RSA 331 hypothetical protein YP_001596264.1 357425 R 360115 CDS YP_001596265.1 161830842 5793468 complement(357543..358316) 1 NC_010117.1 identified by match to protein family HMM PF00753; match to protein family HMM TIGR03413; metallo-beta-lactamase family protein 358316 5793468 COXBURSA331_A0422 Coxiella burnetii RSA 331 metallo-beta-lactamase family protein YP_001596265.1 357543 R 360115 CDS YP_001596266.1 161830615 5793658 358381..359112 1 NC_010117.1 identified by match to protein family HMM PF08241; putative methyltransferase 359112 5793658 COXBURSA331_A0423 Coxiella burnetii RSA 331 putative methyltransferase YP_001596266.1 358381 D 360115 CDS YP_001596267.1 161829961 5793311 359127..359591 1 NC_010117.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 359591 rnhA 5793311 rnhA Coxiella burnetii RSA 331 ribonuclease H YP_001596267.1 359127 D 360115 CDS YP_001596268.1 161831371 5792727 360021..360719 1 NC_010117.1 identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406; DNA polymerase III subunit epsilon 360719 dnaQ 5792727 dnaQ Coxiella burnetii RSA 331 DNA polymerase III subunit epsilon YP_001596268.1 360021 D 360115 CDS YP_001596269.1 161829748 5792755 complement(360713..361357) 1 NC_010117.1 identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 361357 5792755 COXBURSA331_A0425 Coxiella burnetii RSA 331 ErfK/YbiS/YcfS/YnhG family protein YP_001596269.1 360713 R 360115 CDS YP_001596270.1 161831061 5792847 361348..361464 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 361464 5792847 COXBURSA331_A0428 Coxiella burnetii RSA 331 hypothetical protein YP_001596270.1 361348 D 360115 CDS YP_001596271.1 161830042 5792978 complement(364466..365239) 1 NC_010117.1 identified by match to protein family HMM TIGR03349; hypothetical protein 365239 5792978 COXBURSA331_A0429 Coxiella burnetii RSA 331 hypothetical protein YP_001596271.1 364466 R 360115 CDS YP_001596272.1 161830365 5792996 365433..366305 1 NC_010117.1 hypothetical protein 366305 5792996 COXBURSA331_A0430 Coxiella burnetii RSA 331 hypothetical protein YP_001596272.1 365433 D 360115 CDS YP_001596273.1 161830528 5793013 366302..366553 1 NC_010117.1 identified by match to protein family HMM PF00550; putative acyl carrier protein 366553 5793013 COXBURSA331_A0431 Coxiella burnetii RSA 331 putative acyl carrier protein YP_001596273.1 366302 D 360115 CDS YP_001596274.1 161830689 5793021 366534..368213 1 NC_010117.1 identified by match to protein family HMM PF00501; AMP-binding protein 368213 5793021 COXBURSA331_A0433 Coxiella burnetii RSA 331 AMP-binding protein YP_001596274.1 366534 D 360115 CDS YP_001596275.1 161831240 5793073 complement(368191..368358) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 368358 5793073 COXBURSA331_A0432 Coxiella burnetii RSA 331 hypothetical protein YP_001596275.1 368191 R 360115 CDS YP_001596276.1 161831102 5793103 complement(368475..369749) 1 NC_010117.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 369749 purD 5793103 purD Coxiella burnetii RSA 331 phosphoribosylamine--glycine ligase YP_001596276.1 368475 R 360115 CDS YP_001596277.1 161830241 5793181 371318..372991 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 372991 5793181 COXBURSA331_A0436 Coxiella burnetii RSA 331 hypothetical protein YP_001596277.1 371318 D 360115 CDS YP_001596278.1 161830153 5793188 373106..374752 1 NC_010117.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 374752 thiC 5793188 thiC Coxiella burnetii RSA 331 thiamine biosynthesis protein ThiC YP_001596278.1 373106 D 360115 CDS YP_001596279.1 161831570 5794079 374752..375774 1 NC_010117.1 identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352; glycine oxidase ThiO 375774 thiO 5794079 thiO Coxiella burnetii RSA 331 glycine oxidase ThiO YP_001596279.1 374752 D 360115 CDS YP_001596280.1 161830506 5793315 375976..376755 1 NC_010117.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 376755 thiG 5793315 thiG Coxiella burnetii RSA 331 thiazole synthase YP_001596280.1 375976 D 360115 CDS YP_001596281.1 161830055 5793330 376752..378191 1 NC_010117.1 identified by match to protein family HMM PF02581; match to protein family HMM PF08543; match to protein family HMM TIGR00097; match to protein family HMM TIGR00693; thiamine-phosphate pyrophosphorylase/thiamine-phosphate pyrophosphorylase 378191 thiDE 5793330 thiDE Coxiella burnetii RSA 331 thiamine-phosphate pyrophosphorylase/thiamine-phosphate pyrophosphorylase YP_001596281.1 376752 D 360115 CDS YP_001596282.1 161831562 5793333 378269..378943 1 NC_010117.1 identified by match to protein family HMM PF03767; putative acid phosphatase 378943 5793333 COXBURSA331_A0442 Coxiella burnetii RSA 331 putative acid phosphatase YP_001596282.1 378269 D 360115 CDS YP_001596283.1 161831119 5794042 complement(378960..380540) 1 NC_010117.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 380540 purH 5794042 purH Coxiella burnetii RSA 331 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001596283.1 378960 R 360115 CDS YP_001596284.1 161830297 5793365 complement(380524..380817) 1 NC_010117.1 identified by match to protein family HMM PF02954; DNA-binding protein Fis 380817 fis 5793365 fis Coxiella burnetii RSA 331 DNA-binding protein Fis YP_001596284.1 380524 R 360115 CDS YP_001596285.1 161831022 5793376 381061..383697 1 NC_010117.1 identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414; aminopeptidase N 383697 pepN 5793376 pepN Coxiella burnetii RSA 331 aminopeptidase N YP_001596285.1 381061 D 360115 CDS YP_001596286.1 161831222 5793390 complement(383719..384480) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 384480 5793390 COXBURSA331_A0446 Coxiella burnetii RSA 331 hypothetical protein YP_001596286.1 383719 R 360115 CDS YP_001596287.1 161830801 5793439 complement(385691..386689) 1 NC_010117.1 identified by match to protein family HMM PF00365; match to protein family HMM TIGR02482; 6-phosphofructokinase 386689 pfkA 5793439 pfkA Coxiella burnetii RSA 331 6-phosphofructokinase YP_001596287.1 385691 R 360115 CDS YP_001596288.1 161829999 5793473 386616..386789 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 386789 5793473 COXBURSA331_A0449 Coxiella burnetii RSA 331 hypothetical protein YP_001596288.1 386616 D 360115 CDS YP_001596289.1 161829876 5793583 complement(386878..387006) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 387006 5793583 COXBURSA331_A0450 Coxiella burnetii RSA 331 hypothetical protein YP_001596289.1 386878 R 360115 CDS YP_001596290.1 161831269 5793589 388310..388633 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 388633 5793589 COXBURSA331_A0453 Coxiella burnetii RSA 331 hypothetical protein YP_001596290.1 388310 D 360115 CDS YP_001596291.1 161829760 5793609 complement(388634..389833) 1 NC_010117.1 identified by match to protein family HMM PF01261; match to protein family HMM TIGR02630; xylose isomerase 389833 xylA 5793609 xylA Coxiella burnetii RSA 331 xylose isomerase YP_001596291.1 388634 R 360115 CDS YP_001596292.1 161831052 5793691 complement(391492..392883) 1 NC_010117.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; D-xylose-proton symporter 392883 xylT 5793691 xylT Coxiella burnetii RSA 331 D-xylose-proton symporter YP_001596292.1 391492 R 360115 CDS YP_001596293.1 161831467 5793730 complement(392924..393607) 1 NC_010117.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; phosphoglycolate phosphatase 393607 gph 5793730 gph Coxiella burnetii RSA 331 phosphoglycolate phosphatase YP_001596293.1 392924 R 360115 CDS YP_001596294.1 161829915 5793744 complement(393600..394304) 1 NC_010117.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 394304 ubiG 5793744 ubiG Coxiella burnetii RSA 331 3-demethylubiquinone-9 3-methyltransferase YP_001596294.1 393600 R 360115 CDS YP_001596295.1 161830340 5793760 complement(394291..394644) 1 NC_010117.1 identified by match to protein family HMM PF01627; Hpt domain-containing protein 394644 5793760 COXBURSA331_A0459 Coxiella burnetii RSA 331 Hpt domain-containing protein YP_001596295.1 394291 R 360115 CDS YP_001596296.1 161830624 5793816 complement(394690..395583) 1 NC_010117.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux system protein CzcD 395583 czcD 5793816 czcD Coxiella burnetii RSA 331 cation efflux system protein CzcD YP_001596296.1 394690 R 360115 CDS YP_001596297.1 161831162 5793914 complement(395720..396736) 1 NC_010117.1 SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 396736 5793914 COXBURSA331_A0461 Coxiella burnetii RSA 331 putative periplasmic protease YP_001596297.1 395720 R 360115 CDS YP_001596298.1 161831495 5793933 396966..398522 1 NC_010117.1 identified by match to protein family HMM PF00324; amino acid permease family protein 398522 5793933 COXBURSA331_A0462 Coxiella burnetii RSA 331 amino acid permease family protein YP_001596298.1 396966 D 360115 CDS YP_001596299.1 161830686 5794051 complement(400805..400966) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 400966 5794051 COXBURSA331_A0465 Coxiella burnetii RSA 331 hypothetical protein YP_001596299.1 400805 R 360115 CDS YP_001596300.1 161830274 5793930 complement(400991..401227) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 401227 5793930 COXBURSA331_A0464 Coxiella burnetii RSA 331 hypothetical protein YP_001596300.1 400991 R 360115 CDS YP_001596301.1 161829836 5794088 complement(402156..403133) 1 NC_010117.1 hypothetical protein 403133 5794088 COXBURSA331_A0467 Coxiella burnetii RSA 331 hypothetical protein YP_001596301.1 402156 R 360115 CDS YP_001596302.1 161830248 5794138 complement(403160..403447) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 403447 5794138 COXBURSA331_A0468 Coxiella burnetii RSA 331 hypothetical protein YP_001596302.1 403160 R 360115 CDS YP_001596303.1 161830333 5794298 complement(403589..404794) 1 NC_010117.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase 404794 5794298 COXBURSA331_A0469 Coxiella burnetii RSA 331 amidohydrolase YP_001596303.1 403589 R 360115 CDS YP_001596304.1 161830884 5794302 complement(404712..405641) 1 NC_010117.1 hypothetical protein 405641 5794302 COXBURSA331_A0470 Coxiella burnetii RSA 331 hypothetical protein YP_001596304.1 404712 R 360115 CDS YP_001596305.1 161830034 5794305 complement(405875..407200) 1 NC_010117.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; putative iorganic phosphate transporter 407200 5794305 COXBURSA331_A0471 Coxiella burnetii RSA 331 putative iorganic phosphate transporter YP_001596305.1 405875 R 360115 CDS YP_001596306.1 161830507 5794306 complement(407381..408139) 1 NC_010117.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; hypothetical protein 408139 5794306 COXBURSA331_A0472 Coxiella burnetii RSA 331 hypothetical protein YP_001596306.1 407381 R 360115 CDS YP_001596307.1 161830581 5794388 complement(408120..408866) 1 NC_010117.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; phosphate regulon transcriptional regulatory protein PhoB 408866 phoB 5794388 phoB Coxiella burnetii RSA 331 phosphate regulon transcriptional regulatory protein PhoB YP_001596307.1 408120 R 360115 CDS YP_001596308.1 161830288 5794395 408993..410102 1 NC_010117.1 identified by match to protein family HMM PF07995; glucose/sorbosone dehydrogenase 410102 5794395 COXBURSA331_A0474 Coxiella burnetii RSA 331 glucose/sorbosone dehydrogenase YP_001596308.1 408993 D 360115 CDS YP_001596309.1 161829891 5794403 410155..410301 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 410301 5794403 COXBURSA331_A0476 Coxiella burnetii RSA 331 hypothetical protein YP_001596309.1 410155 D 360115 CDS YP_001596310.1 161830202 5794473 complement(410273..410500) 1 NC_010117.1 identified by match to protein family HMM PF05433; putative surface antigen 410500 5794473 COXBURSA331_A0475 Coxiella burnetii RSA 331 putative surface antigen YP_001596310.1 410273 R 360115 CDS YP_001596311.1 161831321 5794497 411784..411909 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 411909 5794497 COXBURSA331_A0479 Coxiella burnetii RSA 331 hypothetical protein YP_001596311.1 411784 D 360115 CDS YP_001596312.1 161830903 5794493 complement(411868..412863) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 412863 5794493 COXBURSA331_A0478 Coxiella burnetii RSA 331 hypothetical protein YP_001596312.1 411868 R 360115 CDS YP_001596313.1 161829808 5794463 complement(413010..413534) 1 NC_010117.1 identified by match to protein family HMM PF01575; MaoC domain-containing protein 413534 5794463 COXBURSA331_A0480 Coxiella burnetii RSA 331 MaoC domain-containing protein YP_001596313.1 413010 R 360115 CDS YP_001596314.1 161830858 5792705 414627..414803 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 414803 5792705 COXBURSA331_A0482 Coxiella burnetii RSA 331 hypothetical protein YP_001596314.1 414627 D 360115 CDS YP_001596315.1 161831503 5792707 415068..415499 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 415499 5792707 COXBURSA331_A0483 Coxiella burnetii RSA 331 hypothetical protein YP_001596315.1 415068 D 360115 CDS YP_001596316.1 161830418 5793713 415548..415724 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 415724 5793713 COXBURSA331_A0485 Coxiella burnetii RSA 331 hypothetical protein YP_001596316.1 415548 D 360115 CDS YP_001596317.1 161829739 5792721 complement(415716..415832) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 415832 5792721 COXBURSA331_A0484 Coxiella burnetii RSA 331 hypothetical protein YP_001596317.1 415716 R 360115 CDS YP_001596318.1 161830578 5793623 415984..416205 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 416205 5793623 COXBURSA331_A0486 Coxiella burnetii RSA 331 hypothetical protein YP_001596318.1 415984 D 360115 CDS YP_001596319.1 161831242 5794570 416362..416784 1 NC_010117.1 putative lipoprotein 416784 5794570 COXBURSA331_A0487 Coxiella burnetii RSA 331 putative lipoprotein YP_001596319.1 416362 D 360115 CDS YP_001596320.1 161830043 5792708 complement(416799..417572) 1 NC_010117.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase/peptidoglycan binding domain-containing protein 417572 5792708 COXBURSA331_A0488 Coxiella burnetii RSA 331 N-acetylmuramoyl-L-alanine amidase/peptidoglycan binding domain-containing protein YP_001596320.1 416799 R 360115 CDS YP_001596321.1 161830328 5793708 complement(417589..417714) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 417714 5793708 COXBURSA331_A0489 Coxiella burnetii RSA 331 hypothetical protein YP_001596321.1 417589 R 360115 CDS YP_001596322.1 161830890 5793231 417825..418355 1 NC_010117.1 identified by match to protein family HMM PF04229; hypothetical protein 418355 5793231 COXBURSA331_A0490 Coxiella burnetii RSA 331 hypothetical protein YP_001596322.1 417825 D 360115 CDS YP_001596323.1 161831382 5794206 complement(419139..420137) 1 NC_010117.1 identified by match to protein family HMM PF00348; polyprenyl synthetase family protein 420137 5794206 COXBURSA331_A0492 Coxiella burnetii RSA 331 polyprenyl synthetase family protein YP_001596323.1 419139 R 360115 CDS YP_001596324.1 161831432 5793836 420227..420841 1 NC_010117.1 identified by match to protein family HMM PF03352; match to protein family HMM TIGR00624; DNA-3-methyladenine glycosylase I 420841 tag 5793836 tag Coxiella burnetii RSA 331 DNA-3-methyladenine glycosylase I YP_001596324.1 420227 D 360115 CDS YP_001596325.1 161829816 5792752 421192..422211 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 422211 5792752 COXBURSA331_A0495 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001596325.1 421192 D 360115 CDS YP_001596326.1 161830176 5794300 complement(422208..422480) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 422480 5794300 COXBURSA331_A0494 Coxiella burnetii RSA 331 hypothetical protein YP_001596326.1 422208 R 360115 CDS YP_001596327.1 161830463 5794035 422805..423152 1 NC_010117.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 423152 rplU 5794035 rplU Coxiella burnetii RSA 331 50S ribosomal protein L21 YP_001596327.1 422805 D 360115 CDS YP_001596328.1 161831112 5792930 423142..423414 1 NC_010117.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 423414 rpmA 5792930 rpmA Coxiella burnetii RSA 331 50S ribosomal protein L27 YP_001596328.1 423142 D 360115 CDS YP_001596329.1 161831328 5792771 423579..424598 1 NC_010117.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 424598 obgE 5792771 obgE Coxiella burnetii RSA 331 GTPase ObgE YP_001596329.1 423579 D 360115 CDS YP_001596330.1 161830049 5792774 427923..428876 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 428876 5792774 COXBURSA331_A0499 Coxiella burnetii RSA 331 hypothetical protein YP_001596330.1 427923 D 360115 CDS YP_001596331.1 161830743 5794021 complement(428882..429154) 1 NC_010117.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 429154 rpsT 5794021 rpsT Coxiella burnetii RSA 331 30S ribosomal protein S20 YP_001596331.1 428882 R 360115 CDS YP_001596332.1 161831164 5792844 complement(429277..429408) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 429408 5792844 COXBURSA331_A0501 Coxiella burnetii RSA 331 hypothetical protein YP_001596332.1 429277 R 360115 CDS YP_001596333.1 161830513 5794531 429398..430945 1 NC_010117.1 identified by match to protein family HMM PF01554; match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 430945 mviN 5794531 mviN Coxiella burnetii RSA 331 integral membrane protein MviN YP_001596333.1 429398 D 360115 CDS YP_001596334.1 161831021 5792853 431017..431979 1 NC_010117.1 identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF 431979 ribF 5792853 ribF Coxiella burnetii RSA 331 riboflavin biosynthesis protein RibF YP_001596334.1 431017 D 360115 CDS YP_001596335.1 161830396 5792729 complement(432121..433275) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 433275 5792729 COXBURSA331_A0504 Coxiella burnetii RSA 331 hypothetical protein YP_001596335.1 432121 R 360115 CDS YP_001596336.1 161830934 5793017 complement(433311..433847) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 433847 5793017 COXBURSA331_A0505 Coxiella burnetii RSA 331 hypothetical protein YP_001596336.1 433311 R 360115 CDS YP_001596337.1 161831457 5792878 433979..434110 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 434110 5792878 COXBURSA331_A0506 Coxiella burnetii RSA 331 hypothetical protein YP_001596337.1 433979 D 360115 CDS YP_001596338.1 161829897 5792865 434154..434840 1 NC_010117.1 putative lipoprotein 434840 5792865 COXBURSA331_A0507 Coxiella burnetii RSA 331 putative lipoprotein YP_001596338.1 434154 D 360115 CDS YP_001596339.1 161830331 5792728 434953..437763 1 NC_010117.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 437763 ileS 5792728 ileS Coxiella burnetii RSA 331 isoleucyl-tRNA synthetase YP_001596339.1 434953 D 360115 CDS YP_001596340.1 161830767 5792908 437772..438263 1 NC_010117.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 438263 lspA 5792908 lspA Coxiella burnetii RSA 331 lipoprotein signal peptidase YP_001596340.1 437772 D 360115 CDS YP_001596341.1 161830806 5793692 438275..438823 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 438823 5793692 COXBURSA331_A0510 Coxiella burnetii RSA 331 hypothetical protein YP_001596341.1 438275 D 360115 CDS YP_001596342.1 161831199 5792923 438845..439324 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 439324 5792923 COXBURSA331_A0511 Coxiella burnetii RSA 331 hypothetical protein YP_001596342.1 438845 D 360115 CDS YP_001596343.1 161830660 5793695 439333..439458 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 439458 5793695 COXBURSA331_A0512 Coxiella burnetii RSA 331 hypothetical protein YP_001596343.1 439333 D 360115 CDS YP_001596344.1 161831146 5793016 439756..440727 1 NC_010117.1 identified by similarity to SP:P08077; aminoglycoside phosphotransferase family protein 440727 5793016 COXBURSA331_A0514 Coxiella burnetii RSA 331 aminoglycoside phosphotransferase family protein YP_001596344.1 439756 D 360115 CDS YP_001596345.1 161830894 5793110 complement(441918..442073) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 442073 5793110 COXBURSA331_A0517 Coxiella burnetii RSA 331 hypothetical protein YP_001596345.1 441918 R 360115 CDS YP_001596346.1 161830358 5793514 442188..442352 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 442352 5793514 COXBURSA331_A0519 Coxiella burnetii RSA 331 hypothetical protein YP_001596346.1 442188 D 360115 CDS YP_001596347.1 161831313 5793048 complement(442349..444085) 1 NC_010117.1 hypothetical protein 444085 5793048 COXBURSA331_A0518 Coxiella burnetii RSA 331 hypothetical protein YP_001596347.1 442349 R 360115 CDS YP_001596348.1 161830574 5793057 complement(444500..444910) 1 NC_010117.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; type IV pilin 444910 5793057 COXBURSA331_A0520 Coxiella burnetii RSA 331 type IV pilin YP_001596348.1 444500 R 360115 CDS YP_001596349.1 161829810 5794090 445731..446519 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 446519 5794090 COXBURSA331_A0522 Coxiella burnetii RSA 331 hypothetical protein YP_001596349.1 445731 D 360115 CDS YP_001596350.1 161830108 5793077 complement(446599..447054) 1 NC_010117.1 identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase family protein 447054 5793077 COXBURSA331_A0523 Coxiella burnetii RSA 331 cytidine/deoxycytidylate deaminase family protein YP_001596350.1 446599 R 360115 CDS YP_001596351.1 161830286 5793069 complement(447682..448527) 1 NC_010117.1 identified by match to protein family HMM PF01063; putative branched-chain amino acid aminotransferase 448527 5793069 COXBURSA331_A0525 Coxiella burnetii RSA 331 putative branched-chain amino acid aminotransferase YP_001596351.1 447682 R 360115 CDS YP_001596352.1 161830400 5793166 complement(448630..449460) 1 NC_010117.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 449460 5793166 COXBURSA331_A0526 Coxiella burnetii RSA 331 polysaccharide deacetylase family protein YP_001596352.1 448630 R 360115 CDS YP_001596353.1 161829840 5792909 complement(449538..449672) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 449672 5792909 COXBURSA331_A0527 Coxiella burnetii RSA 331 hypothetical protein YP_001596353.1 449538 R 360115 CDS YP_001596354.1 161830908 5792736 complement(451300..451635) 1 NC_010117.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 451635 panD 5792736 panD Coxiella burnetii RSA 331 aspartate alpha-decarboxylase YP_001596354.1 451300 R 360115 CDS YP_001596355.1 161831374 5793262 complement(451629..452402) 1 NC_010117.1 identified by match to protein family HMM PF02569; match to protein family HMM TIGR00018; pantoate--beta-alanine ligase 452402 panC 5793262 panC Coxiella burnetii RSA 331 pantoate--beta-alanine ligase YP_001596355.1 451629 R 360115 CDS YP_001596356.1 161830811 5793265 complement(452413..453204) 1 NC_010117.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 453204 panB 5793265 panB Coxiella burnetii RSA 331 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_001596356.1 452413 R 360115 CDS YP_001596357.1 161831191 5792893 complement(453305..454672) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 454672 5792893 COXBURSA331_A0532 Coxiella burnetii RSA 331 hypothetical protein YP_001596357.1 453305 R 360115 CDS YP_001596358.1 161829798 5793362 complement(454919..456514) 1 NC_010117.1 identified by match to protein family HMM PF00324; amino acid permease family protein 456514 5793362 COXBURSA331_A0533 Coxiella burnetii RSA 331 amino acid permease family protein YP_001596358.1 454919 R 360115 CDS YP_001596359.1 161830887 5793273 456705..456917 1 NC_010117.1 identified by match to protein family HMM PF06945; hypothetical protein 456917 5793273 COXBURSA331_A0534 Coxiella burnetii RSA 331 hypothetical protein YP_001596359.1 456705 D 360115 CDS YP_001596360.1 161831529 5793298 458021..458416 1 NC_010117.1 identified by match to protein family HMM PF00472; peptidyl-tRNA hydrolase domain-containing protein 458416 5793298 COXBURSA331_A0536 Coxiella burnetii RSA 331 peptidyl-tRNA hydrolase domain-containing protein YP_001596360.1 458021 D 360115 CDS YP_001596361.1 161830462 5793306 458548..460044 1 NC_010117.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 460044 lysS 5793306 lysS Coxiella burnetii RSA 331 lysyl-tRNA synthetase YP_001596361.1 458548 D 360115 CDS YP_001596362.1 161830229 5794094 complement(460013..460789) 1 NC_010117.1 identified by match to protein family HMM PF01571; match to protein family HMM TIGR03317; glycine cleavage T-protein 460789 5794094 COXBURSA331_A0537 Coxiella burnetii RSA 331 glycine cleavage T-protein YP_001596362.1 460013 R 360115 CDS YP_001596363.1 161829981 5793327 460896..462182 1 NC_010117.1 identified by match to protein family HMM PF07690; major facilitator family transporter 462182 5793327 COXBURSA331_A0539 Coxiella burnetii RSA 331 major facilitator family transporter YP_001596363.1 460896 D 360115 CDS YP_001596364.1 161830460 5793463 462249..462770 1 NC_010117.1 small conductance mechanosensitive ion channel (MscS) family protein 462770 5793463 COXBURSA331_A0540 Coxiella burnetii RSA 331 small conductance mechanosensitive ion channel (MscS) family protein YP_001596364.1 462249 D 360115 CDS YP_001596365.1 161831298 5793332 complement(463349..463585) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 463585 5793332 COXBURSA331_A0542 Coxiella burnetii RSA 331 hypothetical protein YP_001596365.1 463349 R 360115 CDS YP_001596366.1 161830720 5793339 complement(463601..463942) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 463942 5793339 COXBURSA331_A0543 Coxiella burnetii RSA 331 hypothetical protein YP_001596366.1 463601 R 360115 CDS YP_001596367.1 161830753 5793346 complement(463930..464679) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 464679 5793346 COXBURSA331_A0544 Coxiella burnetii RSA 331 hypothetical protein YP_001596367.1 463930 R 360115 CDS YP_001596368.1 161830375 5793487 464940..465527 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 465527 5793487 COXBURSA331_A0545 Coxiella burnetii RSA 331 hypothetical protein YP_001596368.1 464940 D 360115 CDS YP_001596369.1 161829925 5793725 465524..465664 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 465664 5793725 COXBURSA331_A0546 Coxiella burnetii RSA 331 hypothetical protein YP_001596369.1 465524 D 360115 CDS YP_001596370.1 161831465 5793429 465642..465839 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 465839 5793429 COXBURSA331_A0547 Coxiella burnetii RSA 331 hypothetical protein YP_001596370.1 465642 D 360115 CDS YP_001596371.1 161831028 5793431 complement(465939..466454) 1 NC_010117.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA-[protein]-cysteine S-methyltransferase 466454 5793431 COXBURSA331_A0548 Coxiella burnetii RSA 331 methylated-DNA-[protein]-cysteine S-methyltransferase YP_001596371.1 465939 R 360115 CDS YP_001596372.1 161830610 5793432 complement(466460..466807) 1 NC_010117.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 466807 rplS 5793432 rplS Coxiella burnetii RSA 331 50S ribosomal protein L19 YP_001596372.1 466460 R 360115 CDS YP_001596373.1 161830169 5793612 complement(466804..467544) 1 NC_010117.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 467544 trmD 5793612 trmD Coxiella burnetii RSA 331 tRNA (guanine-N(1)-)-methyltransferase YP_001596373.1 466804 R 360115 CDS YP_001596374.1 161831215 5793444 complement(467546..468052) 1 NC_010117.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 468052 rimM 5793444 rimM Coxiella burnetii RSA 331 16S rRNA-processing protein RimM YP_001596374.1 467546 R 360115 CDS YP_001596375.1 161830775 5793449 complement(468131..468544) 1 NC_010117.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 468544 rpsP 5793449 rpsP Coxiella burnetii RSA 331 30S ribosomal protein S16 YP_001596375.1 468131 R 360115 CDS YP_001596376.1 161830354 5793712 468991..469701 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 469701 5793712 COXBURSA331_A0553 Coxiella burnetii RSA 331 hypothetical protein YP_001596376.1 468991 D 360115 CDS YP_001596377.1 161830078 5793457 469790..470809 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 470809 5793457 COXBURSA331_A0555 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001596377.1 469790 D 360115 CDS YP_001596378.1 161830630 5793460 complement(470806..471078) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 471078 5793460 COXBURSA331_A0554 Coxiella burnetii RSA 331 hypothetical protein YP_001596378.1 470806 R 360115 CDS YP_001596379.1 161831342 5793428 471085..471213 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 471213 5793428 COXBURSA331_A0557 Coxiella burnetii RSA 331 hypothetical protein YP_001596379.1 471085 D 360115 CDS YP_001596380.1 161829778 5793465 complement(471168..471722) 1 NC_010117.1 identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 471722 5793465 COXBURSA331_A0556 Coxiella burnetii RSA 331 ankyrin repeat-containing protein YP_001596380.1 471168 R 360115 CDS YP_001596381.1 161830238 5792881 complement(472879..474264) 1 NC_010117.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 474264 ffh 5792881 ffh Coxiella burnetii RSA 331 signal recognition particle protein YP_001596381.1 472879 R 360115 CDS YP_001596382.1 161829770 5793474 474301..474837 1 NC_010117.1 identified by match to protein family HMM PF01578; cytochrome C assembly protein 474837 5793474 COXBURSA331_A0560 Coxiella burnetii RSA 331 cytochrome C assembly protein YP_001596382.1 474301 D 360115 CDS YP_001596383.1 161831394 5793478 474834..476087 1 NC_010117.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; HlyC/CorC (HCC) family protein 476087 5793478 COXBURSA331_A0561 Coxiella burnetii RSA 331 HlyC/CorC (HCC) family protein YP_001596383.1 474834 D 360115 CDS YP_001596384.1 161830963 5793480 476113..476649 1 NC_010117.1 putative fimT protein 476649 5793480 COXBURSA331_A0562 Coxiella burnetii RSA 331 putative fimT protein YP_001596384.1 476113 D 360115 CDS YP_001596385.1 161830511 5793484 476684..477379 1 NC_010117.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 477379 adk 5793484 adk Coxiella burnetii RSA 331 adenylate kinase YP_001596385.1 476684 D 360115 CDS YP_001596386.1 161831483 5793455 477413..477778 1 NC_010117.1 identified by match to protein family HMM PF00085; thioredoxin 477778 trx 5793455 trx Coxiella burnetii RSA 331 thioredoxin YP_001596386.1 477413 D 360115 CDS YP_001596387.1 161830698 5793488 complement(477804..478157) 1 NC_010117.1 putative DNA-binding protein 478157 5793488 COXBURSA331_A0565 Coxiella burnetii RSA 331 putative DNA-binding protein YP_001596387.1 477804 R 360115 CDS YP_001596388.1 161830260 5793427 478448..478849 1 NC_010117.1 hypothetical protein 478849 5793427 COXBURSA331_A0566 Coxiella burnetii RSA 331 hypothetical protein YP_001596388.1 478448 D 360115 CDS YP_001596389.1 161829833 5793491 478879..480048 1 NC_010117.1 identified by match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 480048 5793491 COXBURSA331_A0567 Coxiella burnetii RSA 331 monovalent cation:proton antiporter-2 (CPA2) family protein YP_001596389.1 478879 D 360115 CDS YP_001596390.1 161831356 5793493 480124..480900 1 NC_010117.1 hypothetical protein 480900 5793493 COXBURSA331_A0568 Coxiella burnetii RSA 331 hypothetical protein YP_001596390.1 480124 D 360115 CDS YP_001596391.1 161831463 5793307 480945..483599 1 NC_010117.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 483599 aceE 5793307 aceE Coxiella burnetii RSA 331 pyruvate dehydrogenase subunit E1 YP_001596391.1 480945 D 360115 CDS YP_001596392.1 161830989 5792750 483665..484975 1 NC_010117.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex 484975 aceF 5792750 aceF Coxiella burnetii RSA 331 dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex YP_001596392.1 483665 D 360115 CDS YP_001596393.1 161830135 5794591 484988..486412 1 NC_010117.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoyl dehydrogenase, E3 component of pyruvate dehydrogenases complex 486412 lpdA 5794591 lpdA Coxiella burnetii RSA 331 dihydrolipoyl dehydrogenase, E3 component of pyruvate dehydrogenases complex YP_001596393.1 484988 D 360115 CDS YP_001596394.1 161830567 5793505 complement(486443..487057) 1 NC_010117.1 ComF family protein 487057 5793505 COXBURSA331_A0572 Coxiella burnetii RSA 331 ComF family protein YP_001596394.1 486443 R 360115 CDS YP_001596395.1 161831244 5793329 487710..488555 1 NC_010117.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; putative methyltransferase 488555 5793329 COXBURSA331_A0573 Coxiella burnetii RSA 331 putative methyltransferase YP_001596395.1 487710 D 360115 CDS YP_001596396.1 161831074 5793810 complement(488556..488804) 1 NC_010117.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 488804 xseB 5793810 xseB Coxiella burnetii RSA 331 exodeoxyribonuclease VII small subunit YP_001596396.1 488556 R 360115 CDS YP_001596397.1 161830757 5793525 complement(488817..489020) 1 NC_010117.1 hypothetical protein 489020 5793525 COXBURSA331_A0575 Coxiella burnetii RSA 331 hypothetical protein YP_001596397.1 488817 R 360115 CDS YP_001596398.1 161831169 5792758 complement(489067..489723) 1 NC_010117.1 identified by match to protein family HMM PF00156; putative phosphoribosyl transferase 489723 5792758 COXBURSA331_A0576 Coxiella burnetii RSA 331 putative phosphoribosyl transferase YP_001596398.1 489067 R 360115 CDS YP_001596399.1 161829914 5793533 490059..490340 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 490340 5793533 COXBURSA331_A0577 Coxiella burnetii RSA 331 hypothetical protein YP_001596399.1 490059 D 360115 CDS YP_001596400.1 161830372 5793571 490342..491541 1 NC_010117.1 hypothetical protein 491541 5793571 COXBURSA331_A0578 Coxiella burnetii RSA 331 hypothetical protein YP_001596400.1 490342 D 360115 CDS YP_001596401.1 161830707 5793572 491614..493419 1 NC_010117.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ 493419 recQ 5793572 recQ Coxiella burnetii RSA 331 ATP-dependent DNA helicase RecQ YP_001596401.1 491614 D 360115 CDS YP_001596402.1 161831259 5793489 complement(493462..493578) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 493578 5793489 COXBURSA331_A0580 Coxiella burnetii RSA 331 hypothetical protein YP_001596402.1 493462 R 360115 CDS YP_001596403.1 161830030 5793579 493484..493873 1 NC_010117.1 identified by match to protein family HMM PF00216; DNA-binding protein BpH2 493873 bph2_1 5793579 bph2_1 Coxiella burnetii RSA 331 DNA-binding protein BpH2 YP_001596403.1 493484 D 360115 CDS YP_001596404.1 161830419 5793587 493885..494133 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 494133 5793587 COXBURSA331_A0583 Coxiella burnetii RSA 331 hypothetical protein YP_001596404.1 493885 D 360115 CDS YP_001596405.1 161830539 5794087 complement(494100..494222) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 494222 5794087 COXBURSA331_A0582 Coxiella burnetii RSA 331 hypothetical protein YP_001596405.1 494100 R 360115 CDS YP_001596406.1 161831135 5794396 complement(494152..494274) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 494274 5794396 COXBURSA331_A0584 Coxiella burnetii RSA 331 hypothetical protein YP_001596406.1 494152 R 360115 CDS YP_001596407.1 161831625 5793605 494217..494396 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 494396 5793605 COXBURSA331_A0585 Coxiella burnetii RSA 331 hypothetical protein YP_001596407.1 494217 D 360115 CDS YP_001596408.1 161830158 5793634 494393..496357 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 496357 5793634 COXBURSA331_A0586 Coxiella burnetii RSA 331 hypothetical protein YP_001596408.1 494393 D 360115 CDS YP_001596409.1 161830295 5793820 497055..497804 1 NC_010117.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 497804 kdsB 5793820 kdsB Coxiella burnetii RSA 331 3-deoxy-manno-octulosonate cytidylyltransferase YP_001596409.1 497055 D 360115 CDS YP_001596410.1 161830883 5794447 complement(497788..498267) 1 NC_010117.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 498267 argR 5794447 argR Coxiella burnetii RSA 331 arginine repressor YP_001596410.1 497788 R 360115 CDS YP_001596411.1 161830509 5793632 498361..499113 1 NC_010117.1 identified by match to protein family HMM PF00005; arginine ABC transporter ATP-binding protein 499113 artP 5793632 artP Coxiella burnetii RSA 331 arginine ABC transporter ATP-binding protein YP_001596411.1 498361 D 360115 CDS YP_001596412.1 161831405 5793507 499117..499926 1 NC_010117.1 identified by match to protein family HMM PF00497; arginine ABC transporter periplasmic arginine-binding protein 499926 artI 5793507 artI Coxiella burnetii RSA 331 arginine ABC transporter periplasmic arginine-binding protein YP_001596412.1 499117 D 360115 CDS YP_001596413.1 161831604 5793636 499926..500591 1 NC_010117.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; arginine ABC transporter permease 500591 artQ 5793636 artQ Coxiella burnetii RSA 331 arginine ABC transporter permease YP_001596413.1 499926 D 360115 CDS YP_001596414.1 161831065 5793827 500588..501259 1 NC_010117.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease 501259 artM 5793827 artM Coxiella burnetii RSA 331 amino acid ABC transporter permease YP_001596414.1 500588 D 360115 CDS YP_001596415.1 161830283 5793643 501272..502888 1 NC_010117.1 hypothetical protein 502888 5793643 COXBURSA331_A0594 Coxiella burnetii RSA 331 hypothetical protein YP_001596415.1 501272 D 360115 CDS YP_001596416.1 161829769 5793511 complement(502948..505104) 1 NC_010117.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease 505104 5793511 COXBURSA331_A0595 Coxiella burnetii RSA 331 ribonuclease YP_001596416.1 502948 R 360115 CDS YP_001596417.1 161830459 5794404 505433..506359 1 NC_010117.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase C 506359 rluC 5794404 rluC Coxiella burnetii RSA 331 ribosomal large subunit pseudouridine synthase C YP_001596417.1 505433 D 360115 CDS YP_001596418.1 161830020 5793554 506388..507095 1 NC_010117.1 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 507095 5793554 COXBURSA331_A0597 Coxiella burnetii RSA 331 Ser/Thr protein phosphatase family protein YP_001596418.1 506388 D 360115 CDS YP_001596419.1 161830821 5794000 complement(507187..508221) 1 NC_010117.1 identified by match to protein family HMM PF02253; phospholipase A1 508221 5794000 COXBURSA331_A0598 Coxiella burnetii RSA 331 phospholipase A1 YP_001596419.1 507187 R 360115 CDS YP_001596420.1 161830379 5793268 complement(508277..510013) 1 NC_010117.1 identified by match to protein family HMM PF02811; DNA-binding/PHP domain-containing protein 510013 5793268 COXBURSA331_A0599 Coxiella burnetii RSA 331 DNA-binding/PHP domain-containing protein YP_001596420.1 508277 R 360115 CDS YP_001596421.1 161830160 5793709 510205..510399 1 NC_010117.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 510399 rpmF 5793709 rpmF Coxiella burnetii RSA 331 50S ribosomal protein L32 YP_001596421.1 510205 D 360115 CDS YP_001596422.1 161831212 5793438 510407..511438 1 NC_010117.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 511438 plsX 5793438 plsX Coxiella burnetii RSA 331 putative glycerol-3-phosphate acyltransferase PlsX YP_001596422.1 510407 D 360115 CDS YP_001596423.1 161831071 5793574 511435..512394 1 NC_010117.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 512394 fabH 5793574 fabH Coxiella burnetii RSA 331 3-oxoacyl-ACP synthase YP_001596423.1 511435 D 360115 CDS YP_001596424.1 161830633 5793714 512493..513434 1 NC_010117.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 513434 fabD 5793714 fabD Coxiella burnetii RSA 331 malonyl CoA-acyl carrier protein transacylase YP_001596424.1 512493 D 360115 CDS YP_001596425.1 161831350 5793721 513510..514259 1 NC_010117.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; match to protein family HMM TIGR01830; 3-oxoacyl-(acyl-carrier-protein) reductase 514259 fabG 5793721 fabG Coxiella burnetii RSA 331 3-oxoacyl-(acyl-carrier-protein) reductase YP_001596425.1 513510 D 360115 CDS YP_001596426.1 161831412 5793724 514327..514581 1 NC_010117.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 514581 acpP 5793724 acpP Coxiella burnetii RSA 331 acyl carrier protein YP_001596426.1 514327 D 360115 CDS YP_001596427.1 161830109 5794076 514626..515870 1 NC_010117.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM TIGR03150; 3-oxoacyl-ACP synthase 515870 fabF 5794076 fabF Coxiella burnetii RSA 331 3-oxoacyl-ACP synthase YP_001596427.1 514626 D 360115 CDS YP_001596428.1 161830661 5793727 515880..516992 1 NC_010117.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 516992 5793727 COXBURSA331_A0607 Coxiella burnetii RSA 331 hypothetical protein YP_001596428.1 515880 D 360115 CDS YP_001596429.1 161831009 5793469 516902..517573 1 NC_010117.1 identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase 517573 tmk 5793469 tmk Coxiella burnetii RSA 331 thymidylate kinase YP_001596429.1 516902 D 360115 CDS YP_001596430.1 161831517 5793732 517570..518529 1 NC_010117.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 518529 holB 5793732 holB Coxiella burnetii RSA 331 DNA polymerase III subunit delta' YP_001596430.1 517570 D 360115 CDS YP_001596431.1 161830117 5794510 518693..519460 1 NC_010117.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase 519460 5794510 COXBURSA331_A0611 Coxiella burnetii RSA 331 TatD family hydrolase YP_001596431.1 518693 D 360115 CDS YP_001596432.1 161830876 5793748 complement(519476..519568) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 519568 5793748 COXBURSA331_A0610 Coxiella burnetii RSA 331 hypothetical protein YP_001596432.1 519476 R 360115 CDS YP_001596433.1 161830797 5793331 519575..519847 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 519847 5793331 COXBURSA331_A0613 Coxiella burnetii RSA 331 hypothetical protein YP_001596433.1 519575 D 360115 CDS YP_001596434.1 161830678 5794394 complement(519844..520908) 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 520908 5794394 COXBURSA331_A0612 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001596434.1 519844 R 360115 CDS YP_001596435.1 161831255 5794277 complement(521023..522102) 1 NC_010117.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; glutamine synthetase 522102 glnA 5794277 glnA Coxiella burnetii RSA 331 glutamine synthetase YP_001596435.1 521023 R 360115 CDS YP_001596436.1 161829827 5793791 complement(522265..523743) 1 NC_010117.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; proton/peptide symporter family protein 523743 5793791 COXBURSA331_A0615 Coxiella burnetii RSA 331 proton/peptide symporter family protein YP_001596436.1 522265 R 360115 CDS YP_001596437.1 161830402 5794012 complement(523863..524480) 1 NC_010117.1 identified by match to protein family HMM PF00583; acetyltransferase 524480 5794012 COXBURSA331_A0616 Coxiella burnetii RSA 331 acetyltransferase YP_001596437.1 523863 R 360115 CDS YP_001596438.1 161829966 5793817 524920..526644 1 NC_010117.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 526644 recJ 5793817 recJ Coxiella burnetii RSA 331 single-stranded-DNA-specific exonuclease RecJ YP_001596438.1 524920 D 360115 CDS YP_001596439.1 161830812 5793771 complement(526631..526750) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 526750 5793771 COXBURSA331_A0617 Coxiella burnetii RSA 331 hypothetical protein YP_001596439.1 526631 R 360115 CDS YP_001596440.1 161830497 5792703 complement(526716..527741) 1 NC_010117.1 hypothetical protein 527741 5792703 COXBURSA331_A0619 Coxiella burnetii RSA 331 hypothetical protein YP_001596440.1 526716 R 360115 CDS YP_001596441.1 161830324 5793604 complement(527965..528678) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 528678 5793604 COXBURSA331_A0620 Coxiella burnetii RSA 331 hypothetical protein YP_001596441.1 527965 R 360115 CDS YP_001596442.1 161830906 5793884 528728..529072 1 NC_010117.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 529072 trpR 5793884 trpR Coxiella burnetii RSA 331 Trp operon repressor YP_001596442.1 528728 D 360115 CDS YP_001596443.1 161831247 5793918 529085..529387 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 529387 5793918 COXBURSA331_A0622 Coxiella burnetii RSA 331 hypothetical protein YP_001596443.1 529085 D 360115 CDS YP_001596444.1 161830537 5793938 532254..533402 1 NC_010117.1 hypothetical protein 533402 5793938 COXBURSA331_A0625 Coxiella burnetii RSA 331 hypothetical protein YP_001596444.1 532254 D 360115 CDS YP_001596445.1 161830005 5793939 533402..534193 1 NC_010117.1 hypothetical protein 534193 5793939 COXBURSA331_A0626 Coxiella burnetii RSA 331 hypothetical protein YP_001596445.1 533402 D 360115 CDS YP_001596446.1 161831547 5793983 534864..536183 1 NC_010117.1 identified by match to protein family HMM PF07690; major facilitator family transporter 536183 5793983 COXBURSA331_A0627 Coxiella burnetii RSA 331 major facilitator family transporter YP_001596446.1 534864 D 360115 CDS YP_001596447.1 161831115 5793621 536281..536397 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 536397 5793621 COXBURSA331_A0628 Coxiella burnetii RSA 331 hypothetical protein YP_001596447.1 536281 D 360115 CDS YP_001596448.1 161830553 5792730 complement(537415..538599) 1 NC_010117.1 identified by match to protein family HMM PF00155; aspartate aminotransferase 538599 aspC 5792730 aspC Coxiella burnetii RSA 331 aspartate aminotransferase YP_001596448.1 537415 R 360115 CDS YP_001596449.1 161829993 5794041 538680..540698 1 NC_010117.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 540698 uvrB 5794041 uvrB Coxiella burnetii RSA 331 excinuclease ABC subunit B YP_001596449.1 538680 D 360115 CDS YP_001596450.1 161830930 5794054 540758..541366 1 NC_010117.1 identified by match to protein family HMM PF09335; DedA family protein 541366 5794054 COXBURSA331_A0632 Coxiella burnetii RSA 331 DedA family protein YP_001596450.1 540758 D 360115 CDS YP_001596451.1 161830246 5794056 complement(541396..542295) 1 NC_010117.1 identified by match to protein family HMM PF00682; hydroxymethylglutaryl-CoA lyase 542295 leuA 5794056 leuA Coxiella burnetii RSA 331 hydroxymethylglutaryl-CoA lyase YP_001596451.1 541396 R 360115 CDS YP_001596452.1 161829728 5794065 complement(542282..543637) 1 NC_010117.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; N-ethylammeline chlorohydrolase 543637 5794065 COXBURSA331_A0634 Coxiella burnetii RSA 331 N-ethylammeline chlorohydrolase YP_001596452.1 542282 R 360115 CDS YP_001596453.1 161831223 5794070 543912..544082 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 544082 5794070 COXBURSA331_A0635 Coxiella burnetii RSA 331 hypothetical protein YP_001596453.1 543912 D 360115 CDS YP_001596454.1 161831482 5794046 544329..544601 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 544601 5794046 COXBURSA331_A0637 Coxiella burnetii RSA 331 hypothetical protein YP_001596454.1 544329 D 360115 CDS YP_001596455.1 161830936 5793625 complement(544598..545617) 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 545617 5793625 COXBURSA331_A0636 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001596455.1 544598 R 360115 CDS YP_001596456.1 161830072 5794582 545931..548477 1 NC_010117.1 identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase subunit A 548477 gyrA 5794582 gyrA Coxiella burnetii RSA 331 DNA gyrase subunit A YP_001596456.1 545931 D 360115 CDS YP_001596457.1 161830670 5794091 548538..549620 1 NC_010117.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 549620 serC 5794091 serC Coxiella burnetii RSA 331 phosphoserine aminotransferase YP_001596457.1 548538 D 360115 CDS YP_001596458.1 161830258 5794596 549626..550942 1 NC_010117.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 550942 aroA 5794596 aroA Coxiella burnetii RSA 331 3-phosphoshikimate 1-carboxyvinyltransferase YP_001596458.1 549626 D 360115 CDS YP_001596459.1 161831066 5794095 550943..551656 1 NC_010117.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 551656 cmk 5794095 cmk Coxiella burnetii RSA 331 cytidylate kinase YP_001596459.1 550943 D 360115 CDS YP_001596460.1 161831346 5794039 551800..553455 1 NC_010117.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 553455 rpsA 5794039 rpsA Coxiella burnetii RSA 331 30S ribosomal protein S1 YP_001596460.1 551800 D 360115 CDS YP_001596461.1 161829719 5794205 553610..553900 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 553900 5794205 COXBURSA331_A0643 Coxiella burnetii RSA 331 hypothetical protein YP_001596461.1 553610 D 360115 CDS YP_001596462.1 161830717 5793677 553900..555066 1 NC_010117.1 identified by match to protein family HMM PF00515; tetratricopeptide repeat protein 555066 5793677 COXBURSA331_A0644 Coxiella burnetii RSA 331 tetratricopeptide repeat protein YP_001596462.1 553900 D 360115 CDS YP_001596463.1 161831310 5793498 555070..555780 1 NC_010117.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 555780 pyrF 5793498 pyrF Coxiella burnetii RSA 331 orotidine 5'-phosphate decarboxylase YP_001596463.1 555070 D 360115 CDS YP_001596464.1 161830444 5793839 555873..556214 1 NC_010117.1 identified by match to protein family HMM TIGR00426; helix-hairpin-helix repeat-containing competence protein ComEA 556214 5793839 COXBURSA331_A0646 Coxiella burnetii RSA 331 helix-hairpin-helix repeat-containing competence protein ComEA YP_001596464.1 555873 D 360115 CDS YP_001596465.1 161830112 5794804 556215..556352 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 556352 5794804 COXBURSA331_A0647 Coxiella burnetii RSA 331 hypothetical protein YP_001596465.1 556215 D 360115 CDS YP_001596466.1 161830454 5794301 556426..557493 1 NC_010117.1 identified by match to protein family HMM PF00953; putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase 557493 5794301 COXBURSA331_A0648 Coxiella burnetii RSA 331 putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase YP_001596466.1 556426 D 360115 CDS YP_001596467.1 161830015 5794551 complement(557616..558812) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 558812 5794551 COXBURSA331_A0649 Coxiella burnetii RSA 331 hypothetical protein YP_001596467.1 557616 R 360115 CDS YP_001596468.1 161831323 5794399 558990..559961 1 NC_010117.1 identified by match to protein family HMM PF05036; match to protein family HMM PF08238; sporulation and cell division repeat-containing protein 559961 5794399 COXBURSA331_A0650 Coxiella burnetii RSA 331 sporulation and cell division repeat-containing protein YP_001596468.1 558990 D 360115 CDS YP_001596469.1 161830928 5794520 complement(559995..560117) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 560117 5794520 COXBURSA331_A0651 Coxiella burnetii RSA 331 hypothetical protein YP_001596469.1 559995 R 360115 CDS YP_001596470.1 161830226 5793831 560738..562252 1 NC_010117.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; tripeptide permease TppB 562252 tppB 5793831 tppB Coxiella burnetii RSA 331 tripeptide permease TppB YP_001596470.1 560738 D 360115 CDS YP_001596471.1 161829706 5794622 562431..565940 1 NC_010117.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR02168; chromosome segregation protein SMC 565940 smc 5794622 smc Coxiella burnetii RSA 331 chromosome segregation protein SMC YP_001596471.1 562431 D 360115 CDS YP_001596472.1 161830058 5794680 566010..566687 1 NC_010117.1 identified by match to protein family HMM PF04354; match to protein family HMM TIGR02205; cell division protein ZipA 566687 zipA 5794680 zipA Coxiella burnetii RSA 331 cell division protein ZipA YP_001596472.1 566010 D 360115 CDS YP_001596473.1 161831535 5794484 566697..568709 1 NC_010117.1 identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; NAD-dependent DNA ligase 568709 ligA 5794484 ligA Coxiella burnetii RSA 331 NAD-dependent DNA ligase YP_001596473.1 566697 D 360115 CDS YP_001596474.1 161831348 5794457 570901..571791 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 571791 5794457 COXBURSA331_A0657 Coxiella burnetii RSA 331 hypothetical protein YP_001596474.1 570901 D 360115 CDS YP_001596475.1 161829729 5792724 571894..572316 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 572316 5792724 COXBURSA331_A0658 Coxiella burnetii RSA 331 hypothetical protein YP_001596475.1 571894 D 360115 CDS YP_001596476.1 161830254 5792698 572444..573022 1 NC_010117.1 identified by match to protein family HMM PF04011; LemA family protein 573022 5792698 COXBURSA331_A0659 Coxiella burnetii RSA 331 LemA family protein YP_001596476.1 572444 D 360115 CDS YP_001596477.1 161831098 5794555 573032..574078 1 NC_010117.1 putative metalloprotease; heat shock protein HtpX 574078 5794555 COXBURSA331_A0660 Coxiella burnetii RSA 331 heat shock protein HtpX YP_001596477.1 573032 D 360115 CDS YP_001596478.1 161831595 5792869 complement(574119..575804) 1 NC_010117.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; match to protein family HMM PF08241; match to protein family HMM PF08242; TPR repeat-containing methyltransferase 575804 5792869 COXBURSA331_A0661 Coxiella burnetii RSA 331 TPR repeat-containing methyltransferase YP_001596478.1 574119 R 360115 CDS YP_001596479.1 161829948 5794488 complement(575785..576789) 1 NC_010117.1 identified by match to protein family HMM TIGR02282; lytic murein transglycosylase B 576789 mltB 5794488 mltB Coxiella burnetii RSA 331 lytic murein transglycosylase B YP_001596479.1 575785 R 360115 CDS YP_001596480.1 161830492 5794479 complement(576869..577957) 1 NC_010117.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; rod shape-determining protein RodA 577957 mrdB 5794479 mrdB Coxiella burnetii RSA 331 rod shape-determining protein RodA YP_001596480.1 576869 R 360115 CDS YP_001596481.1 161831043 5794492 complement(578060..579898) 1 NC_010117.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein 579898 pbpA 5794492 pbpA Coxiella burnetii RSA 331 penicillin-binding protein YP_001596481.1 578060 R 360115 CDS YP_001596482.1 161830653 5792697 complement(580383..580733) 1 NC_010117.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap family protein 580733 5792697 COXBURSA331_A0666 Coxiella burnetii RSA 331 iojap family protein YP_001596482.1 580383 R 360115 CDS YP_001596483.1 161830025 5794671 580933..581952 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 581952 5794671 COXBURSA331_A0668 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001596483.1 580933 D 360115 CDS YP_001596484.1 161831453 5793164 complement(581949..582221) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 582221 5793164 COXBURSA331_A0667 Coxiella burnetii RSA 331 hypothetical protein YP_001596484.1 581949 R 360115 CDS YP_001596485.1 161830813 5794619 complement(582315..582518) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 582518 5794619 COXBURSA331_A0669 Coxiella burnetii RSA 331 hypothetical protein YP_001596485.1 582315 R 360115 CDS YP_001596486.1 161831367 5794676 complement(582724..583371) 1 NC_010117.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase 583371 nadD 5794676 nadD Coxiella burnetii RSA 331 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_001596486.1 582724 R 360115 CDS YP_001596487.1 161831366 5794903 complement(583373..584392) 1 NC_010117.1 identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128; DNA polymerase III subunit delta 584392 holA 5794903 holA Coxiella burnetii RSA 331 DNA polymerase III subunit delta YP_001596487.1 583373 R 360115 CDS YP_001596488.1 161829821 5794814 complement(584395..585015) 1 NC_010117.1 hypothetical protein 585015 5794814 COXBURSA331_A0672 Coxiella burnetii RSA 331 hypothetical protein YP_001596488.1 584395 R 360115 CDS YP_001596489.1 161830613 5793291 complement(584936..587398) 1 NC_010117.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 587398 leuS 5793291 leuS Coxiella burnetii RSA 331 leucyl-tRNA synthetase YP_001596489.1 584936 R 360115 CDS YP_001596490.1 161831064 5794905 587538..588770 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 588770 5794905 COXBURSA331_A0674 Coxiella burnetii RSA 331 hypothetical protein YP_001596490.1 587538 D 360115 CDS YP_001596491.1 161830387 5794013 589518..589658 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 589658 5794013 COXBURSA331_A0676 Coxiella burnetii RSA 331 hypothetical protein YP_001596491.1 589518 D 360115 CDS YP_001596492.1 161830829 5793616 complement(589660..590940) 1 NC_010117.1 putative ATP-binding protein 590940 5793616 COXBURSA331_A0677 Coxiella burnetii RSA 331 putative ATP-binding protein YP_001596492.1 589660 R 360115 CDS YP_001596493.1 161830992 5794409 complement(591055..592512) 1 NC_010117.1 identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546; apolipoprotein N-acyltransferase 592512 lnt 5794409 lnt Coxiella burnetii RSA 331 apolipoprotein N-acyltransferase YP_001596493.1 591055 R 360115 CDS YP_001596494.1 161831460 5793738 complement(592505..593344) 1 NC_010117.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471; putative magnesium and cobalt efflux protein corC 593344 5793738 COXBURSA331_A0679 Coxiella burnetii RSA 331 putative magnesium and cobalt efflux protein corC YP_001596494.1 592505 R 360115 CDS YP_001596495.1 161830136 5792720 complement(593399..594730) 1 NC_010117.1 identified by match to protein family HMM PF07690; major facilitator family transporter 594730 5792720 COXBURSA331_A0680 Coxiella burnetii RSA 331 major facilitator family transporter YP_001596495.1 593399 R 360115 CDS YP_001596496.1 161830561 5793597 complement(594720..595178) 1 NC_010117.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein 595178 5793597 COXBURSA331_A0681 Coxiella burnetii RSA 331 hypothetical protein YP_001596496.1 594720 R 360115 CDS YP_001596497.1 161830187 5794437 complement(595175..596146) 1 NC_010117.1 identified by match to protein family HMM PF02562; PhoH family protein 596146 5794437 COXBURSA331_A0682 Coxiella burnetii RSA 331 PhoH family protein YP_001596497.1 595175 R 360115 CDS YP_001596498.1 161830593 5793523 complement(596157..597476) 1 NC_010117.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 597476 miaB 5793523 miaB Coxiella burnetii RSA 331 (dimethylallyl)adenosine tRNA methylthiotransferase YP_001596498.1 596157 R 360115 CDS YP_001596499.1 161831220 5793853 complement(597497..599179) 1 NC_010117.1 identified by match to protein family HMM PF00324; amino acid permease family protein 599179 5793853 COXBURSA331_A0684 Coxiella burnetii RSA 331 amino acid permease family protein YP_001596499.1 597497 R 360115 CDS YP_001596500.1 161829820 5793898 600145..601521 1 NC_010117.1 identified by match to protein family HMM PF00883; cytosol aminopeptidase 601521 5793898 COXBURSA331_A0686 Coxiella burnetii RSA 331 cytosol aminopeptidase YP_001596500.1 600145 D 360115 CDS YP_001596501.1 161830345 5793521 601531..603678 1 NC_010117.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 603678 fadE 5793521 fadE Coxiella burnetii RSA 331 acyl-CoA dehydrogenase YP_001596501.1 601531 D 360115 CDS YP_001596502.1 161829942 5794294 complement(604095..604220) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 604220 5794294 COXBURSA331_A0688 Coxiella burnetii RSA 331 hypothetical protein YP_001596502.1 604095 R 360115 CDS YP_001596503.1 161831312 5793737 604223..605518 1 NC_010117.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 605518 5793737 COXBURSA331_A0689 Coxiella burnetii RSA 331 acetyl-CoA acetyltransferase YP_001596503.1 604223 D 360115 CDS YP_001596504.1 161829913 5793682 605593..607620 1 NC_010117.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; putative fatty oxidation complex subunit alpha 607620 5793682 COXBURSA331_A0690 Coxiella burnetii RSA 331 putative fatty oxidation complex subunit alpha YP_001596504.1 605593 D 360115 CDS YP_001596505.1 161830452 5794436 607617..608384 1 NC_010117.1 hypothetical protein 608384 5794436 COXBURSA331_A0691 Coxiella burnetii RSA 331 hypothetical protein YP_001596505.1 607617 D 360115 CDS YP_001596506.1 161831006 5794906 complement(608397..609371) 1 NC_010117.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 609371 5794906 COXBURSA331_A0692 Coxiella burnetii RSA 331 glycosyl transferase family protein YP_001596506.1 608397 R 360115 CDS YP_001596507.1 161830098 5793927 complement(609358..610851) 1 NC_010117.1 hypothetical protein 610851 5793927 COXBURSA331_A0693 Coxiella burnetii RSA 331 hypothetical protein YP_001596507.1 609358 R 360115 CDS YP_001596508.1 161830290 5794025 610976..611797 1 NC_010117.1 hypothetical protein 611797 5794025 COXBURSA331_A0695 Coxiella burnetii RSA 331 hypothetical protein YP_001596508.1 610976 D 360115 CDS YP_001596509.1 161829743 5792841 complement(611767..612102) 1 NC_010117.1 identified by match to protein family HMM PF00037; ferrodoxin 612102 5792841 COXBURSA331_A0694 Coxiella burnetii RSA 331 ferrodoxin YP_001596509.1 611767 R 360115 CDS YP_001596510.1 161830322 5793105 612175..612414 1 NC_010117.1 identified by match to protein family HMM PF01722; BolA family protein 612414 5793105 COXBURSA331_A0696 Coxiella burnetii RSA 331 BolA family protein YP_001596510.1 612175 D 360115 CDS YP_001596511.1 161830540 5794433 612417..612716 1 NC_010117.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; glutaredoxin family protein 612716 5794433 COXBURSA331_A0697 Coxiella burnetii RSA 331 glutaredoxin family protein YP_001596511.1 612417 D 360115 CDS YP_001596512.1 161829969 5792715 612739..612888 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 612888 5792715 COXBURSA331_A0698 Coxiella burnetii RSA 331 hypothetical protein YP_001596512.1 612739 D 360115 CDS YP_001596513.1 161831614 5794674 complement(613271..613474) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 613474 5794674 COXBURSA331_A0699 Coxiella burnetii RSA 331 hypothetical protein YP_001596513.1 613271 R 360115 CDS YP_001596514.1 161831091 5793355 613535..617041 1 NC_010117.1 hypothetical protein 617041 5793355 COXBURSA331_A0700 Coxiella burnetii RSA 331 hypothetical protein YP_001596514.1 613535 D 360115 CDS YP_001596515.1 161830074 5793087 617085..617408 1 NC_010117.1 identified by match to protein family HMM PF00581; thiosulfate sulfurtransferase GlpE 617408 5793087 COXBURSA331_A0701 Coxiella burnetii RSA 331 thiosulfate sulfurtransferase GlpE YP_001596515.1 617085 D 360115 CDS YP_001596516.1 161831209 5793541 617488..618483 1 NC_010117.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 618483 nadA 5793541 nadA Coxiella burnetii RSA 331 quinolinate synthetase YP_001596516.1 617488 D 360115 CDS YP_001596517.1 161831414 5792711 618480..618878 1 NC_010117.1 ferredoxin 2fe-2s 618878 5792711 COXBURSA331_A0703 Coxiella burnetii RSA 331 ferredoxin 2fe-2s YP_001596517.1 618480 D 360115 CDS YP_001596518.1 161830367 5793545 618875..619048 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 619048 5793545 COXBURSA331_A0704 Coxiella burnetii RSA 331 hypothetical protein YP_001596518.1 618875 D 360115 CDS YP_001596519.1 161830532 5792913 619055..619879 1 NC_010117.1 hypothetical protein 619879 5792913 COXBURSA331_A0705 Coxiella burnetii RSA 331 hypothetical protein YP_001596519.1 619055 D 360115 CDS YP_001596520.1 161829721 5793957 619887..620198 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 620198 5793957 COXBURSA331_A0706 Coxiella burnetii RSA 331 hypothetical protein YP_001596520.1 619887 D 360115 CDS YP_001596521.1 161830990 5793565 complement(621318..622082) 1 NC_010117.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 622082 5793565 COXBURSA331_A0708 Coxiella burnetii RSA 331 metallo-beta-lactamase family protein YP_001596521.1 621318 R 360115 CDS YP_001596522.1 161831622 5793923 complement(622170..622292) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 622292 5793923 COXBURSA331_A0709 Coxiella burnetii RSA 331 hypothetical protein YP_001596522.1 622170 R 360115 CDS YP_001596523.1 161830378 5792699 complement(622681..623808) 1 NC_010117.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539; putative oxygen-independent coproporphyrinogen III oxidase 623808 5792699 COXBURSA331_A0710 Coxiella burnetii RSA 331 putative oxygen-independent coproporphyrinogen III oxidase YP_001596523.1 622681 R 360115 CDS YP_001596524.1 161829723 5793856 624411..625226 1 NC_010117.1 identified by match to protein family HMM PF00459; match to protein family HMM TIGR01331; 3'(2'),5'-bisphosphate nucleotidase 625226 cysQ1 5793856 cysQ1 Coxiella burnetii RSA 331 3'(2'),5'-bisphosphate nucleotidase YP_001596524.1 624411 D 360115 CDS YP_001596525.1 161830569 5794459 625320..626339 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 626339 5794459 COXBURSA331_A0714 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001596525.1 625320 D 360115 CDS YP_001596526.1 161831253 5793875 complement(626336..626608) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 626608 5793875 COXBURSA331_A0713 Coxiella burnetii RSA 331 hypothetical protein YP_001596526.1 626336 R 360115 CDS YP_001596527.1 161830137 5792733 626995..628392 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 628392 5792733 COXBURSA331_A0715 Coxiella burnetii RSA 331 hypothetical protein YP_001596527.1 626995 D 360115 CDS YP_001596528.1 161830921 5792719 complement(628720..628878) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 628878 5792719 COXBURSA331_A0716 Coxiella burnetii RSA 331 hypothetical protein YP_001596528.1 628720 R 360115 CDS YP_001596529.1 161830003 5793755 complement(629124..629288) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 629288 5793755 COXBURSA331_A0717 Coxiella burnetii RSA 331 hypothetical protein YP_001596529.1 629124 R 360115 CDS YP_001596530.1 161829802 5793994 complement(629338..629832) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 629832 5793994 COXBURSA331_A0718 Coxiella burnetii RSA 331 hypothetical protein YP_001596530.1 629338 R 360115 CDS YP_001596531.1 161830219 5794754 629981..630499 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 630499 5794754 COXBURSA331_A0719 Coxiella burnetii RSA 331 hypothetical protein YP_001596531.1 629981 D 360115 CDS YP_001596532.1 161831576 5793678 complement(631296..632807) 1 NC_010117.1 identified by match to protein family HMM PF00288; match to protein family HMM PF00293; match to protein family HMM PF08544; match to protein family HMM TIGR01240; match to protein family HMM TIGR02150; diphosphomevalonate decarboxylase/isopentenyl-diphosphate delta-isomerase 632807 mvaD/idi 5793678 mvaD/idi Coxiella burnetii RSA 331 diphosphomevalonate decarboxylase/isopentenyl-diphosphate delta-isomerase YP_001596532.1 631296 R 360115 CDS YP_001596533.1 161830011 5793060 complement(632800..633741) 1 NC_010117.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR00549; mevalonate kinase 633741 mvk 5793060 mvk Coxiella burnetii RSA 331 mevalonate kinase YP_001596533.1 632800 R 360115 CDS YP_001596534.1 161830446 5794792 complement(633840..634862) 1 NC_010117.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR00549; putative phopshomevalonate kinase 634862 5794792 COXBURSA331_A0722 Coxiella burnetii RSA 331 putative phopshomevalonate kinase YP_001596534.1 633840 R 360115 CDS YP_001596535.1 161830039 5794777 complement(634859..635926) 1 NC_010117.1 identified by match to protein family HMM PF00368; hydroxymethylglutaryl-CoA reductase (NADPH) 635926 hmgA 5794777 hmgA Coxiella burnetii RSA 331 hydroxymethylglutaryl-CoA reductase (NADPH) YP_001596535.1 634859 R 360115 CDS YP_001596536.1 161830984 5794767 636112..638523 1 NC_010117.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303; outer membrane protein assembly complex, YaeT protein 638523 yaeT 5794767 yaeT Coxiella burnetii RSA 331 outer membrane protein assembly complex, YaeT protein YP_001596536.1 636112 D 360115 CDS YP_001596537.1 161831434 5794773 638601..639098 1 NC_010117.1 identified by match to protein family HMM PF03938; putative outer membrane chaperone protein Skp 639098 5794773 COXBURSA331_A0725 Coxiella burnetii RSA 331 putative outer membrane chaperone protein Skp YP_001596537.1 638601 D 360115 CDS YP_001596538.1 161830128 5794888 639108..640136 1 NC_010117.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 640136 lpxD 5794888 lpxD Coxiella burnetii RSA 331 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_001596538.1 639108 D 360115 CDS YP_001596539.1 161831106 5794669 640142..640570 1 NC_010117.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 640570 fabZ 5794669 fabZ Coxiella burnetii RSA 331 (3R)-hydroxymyristoyl-ACP dehydratase YP_001596539.1 640142 D 360115 CDS YP_001596540.1 161829759 5794687 640575..641354 1 NC_010117.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 641354 lpxA 5794687 lpxA Coxiella burnetii RSA 331 UDP-N-acetylglucosamine acyltransferase YP_001596540.1 640575 D 360115 CDS YP_001596541.1 161831276 5793367 641396..641941 1 NC_010117.1 hypothetical protein 641941 5793367 COXBURSA331_A0729 Coxiella burnetii RSA 331 hypothetical protein YP_001596541.1 641396 D 360115 CDS YP_001596542.1 161830862 5793190 complement(642034..643566) 1 NC_010117.1 hypothetical protein 643566 5793190 COXBURSA331_A0730 Coxiella burnetii RSA 331 hypothetical protein YP_001596542.1 642034 R 360115 CDS YP_001596543.1 161830414 5794407 complement(643556..644701) 1 NC_010117.1 identified by match to protein family HMM PF01757; acyltransferase family protein 644701 5794407 COXBURSA331_A0731 Coxiella burnetii RSA 331 acyltransferase family protein YP_001596543.1 643556 R 360115 CDS YP_001596544.1 161830939 5792895 complement(644705..645193) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 645193 5792895 COXBURSA331_A0732 Coxiella burnetii RSA 331 hypothetical protein YP_001596544.1 644705 R 360115 CDS YP_001596545.1 161831515 5793462 645302..645574 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 645574 5793462 COXBURSA331_A0734 Coxiella burnetii RSA 331 hypothetical protein YP_001596545.1 645302 D 360115 CDS YP_001596546.1 161829982 5794677 complement(645571..646590) 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 646590 5794677 COXBURSA331_A0733 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001596546.1 645571 R 360115 CDS YP_001596547.1 161830975 5794660 complement(646725..647855) 1 NC_010117.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 647855 lpxB 5794660 lpxB Coxiella burnetii RSA 331 lipid-A-disaccharide synthase YP_001596547.1 646725 R 360115 CDS YP_001596548.1 161831095 5794628 complement(647845..648828) 1 NC_010117.1 identified by match to protein family HMM PF01408; oxidoreductase, NAD-binding 648828 5794628 COXBURSA331_A0736 Coxiella burnetii RSA 331 oxidoreductase, NAD-binding YP_001596548.1 647845 R 360115 CDS YP_001596549.1 161830554 5794639 649020..649466 1 NC_010117.1 identified by match to protein family HMM PF00383; tRNA-specific adenosine deaminase 649466 tadA 5794639 tadA Coxiella burnetii RSA 331 tRNA-specific adenosine deaminase YP_001596549.1 649020 D 360115 CDS YP_001596550.1 161829976 5794518 649471..649593 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 649593 5794518 COXBURSA331_A0738 Coxiella burnetii RSA 331 hypothetical protein YP_001596550.1 649471 D 360115 CDS YP_001596551.1 161831376 5793357 649904..650017 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 650017 5793357 COXBURSA331_A0739 Coxiella burnetii RSA 331 hypothetical protein YP_001596551.1 649904 D 360115 CDS YP_001596552.1 161830364 5793941 650028..650435 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 650435 5793941 COXBURSA331_A0740 Coxiella burnetii RSA 331 hypothetical protein YP_001596552.1 650028 D 360115 CDS YP_001596553.1 161829945 5793253 650691..652631 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 652631 5793253 COXBURSA331_A0741 Coxiella burnetii RSA 331 hypothetical protein YP_001596553.1 650691 D 360115 CDS YP_001596554.1 161831166 5792949 complement(652757..652870) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 652870 5792949 COXBURSA331_A0742 Coxiella burnetii RSA 331 hypothetical protein YP_001596554.1 652757 R 360115 CDS YP_001596555.1 161830768 5792861 653016..653543 1 NC_010117.1 identified by match to protein family HMM PF00719; inorganic diphosphatase 653543 ppa 5792861 ppa Coxiella burnetii RSA 331 inorganic diphosphatase YP_001596555.1 653016 D 360115 CDS YP_001596556.1 161830850 5793477 653662..656802 1 NC_010117.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 656802 putA 5793477 putA Coxiella burnetii RSA 331 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_001596556.1 653662 D 360115 CDS YP_001596557.1 161830847 5793982 656875..657567 1 NC_010117.1 identified by match to protein family HMM PF00254; match to protein family HMM PF01346; peptidyl-prolyl cis-trans isomerase Mip 657567 mip 5793982 mip Coxiella burnetii RSA 331 peptidyl-prolyl cis-trans isomerase Mip YP_001596557.1 656875 D 360115 CDS YP_001596558.1 161831054 5793324 657693..661583 1 NC_010117.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 661583 purL 5793324 purL Coxiella burnetii RSA 331 phosphoribosylformylglycinamidine synthase YP_001596558.1 657693 D 360115 CDS YP_001596559.1 161829917 5794598 complement(661643..661942) 1 NC_010117.1 hypothetical protein 661942 5794598 COXBURSA331_A0747 Coxiella burnetii RSA 331 hypothetical protein YP_001596559.1 661643 R 360115 CDS YP_001596560.1 161830206 5794334 662126..664018 1 NC_010117.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; putative aerobic respiration control sensor protein arcB 664018 5794334 COXBURSA331_A0748 Coxiella burnetii RSA 331 putative aerobic respiration control sensor protein arcB YP_001596560.1 662126 D 360115 CDS YP_001596561.1 161831619 5794575 665569..666462 1 NC_010117.1 identified by match to protein family HMM PF00892; UAA family protein 666462 5794575 COXBURSA331_A0750 Coxiella burnetii RSA 331 UAA family protein YP_001596561.1 665569 D 360115 CDS YP_001596562.1 161829998 5794578 complement(666481..667242) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 667242 5794578 COXBURSA331_A0751 Coxiella burnetii RSA 331 hypothetical protein YP_001596562.1 666481 R 360115 CDS YP_001596563.1 161830530 5794545 complement(667659..668795) 1 NC_010117.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; branched-chain alpha-keto acid dehydrogenase subunit E2 668795 pdhC 5794545 pdhC Coxiella burnetii RSA 331 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_001596563.1 667659 R 360115 CDS YP_001596564.1 161830838 5794556 complement(668795..669775) 1 NC_010117.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit beta 669775 pdhB 5794556 pdhB Coxiella burnetii RSA 331 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit beta YP_001596564.1 668795 R 360115 CDS YP_001596565.1 161829872 5794322 complement(669980..671086) 1 NC_010117.1 identified by match to protein family HMM PF00676; match to protein family HMM TIGR03181; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 671086 pdhA 5794322 pdhA Coxiella burnetii RSA 331 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha YP_001596565.1 669980 R 360115 CDS YP_001596566.1 161829736 5793799 complement(671083..672177) 1 NC_010117.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Glu/Leu/Phe/Val dehydrogenase 672177 5793799 COXBURSA331_A0755 Coxiella burnetii RSA 331 Glu/Leu/Phe/Val dehydrogenase YP_001596566.1 671083 R 360115 CDS YP_001596567.1 161831281 5793563 672285..673019 1 NC_010117.1 identified by match to protein family HMM PF03009; putative glycerophosphoryl diester phosphodiesterase 673019 5793563 COXBURSA331_A0756 Coxiella burnetii RSA 331 putative glycerophosphoryl diester phosphodiesterase YP_001596567.1 672285 D 360115 CDS YP_001596568.1 161830583 5794405 673016..674080 1 NC_010117.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 674080 ribD 5794405 ribD Coxiella burnetii RSA 331 riboflavin biosynthesis protein RibD YP_001596568.1 673016 D 360115 CDS YP_001596569.1 161830994 5792731 complement(674058..674396) 1 NC_010117.1 hypothetical protein 674396 5792731 COXBURSA331_A0757 Coxiella burnetii RSA 331 hypothetical protein YP_001596569.1 674058 R 360115 CDS YP_001596570.1 161830488 5793818 complement(674402..674665) 1 NC_010117.1 identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552; prevent-host-death family protein 674665 5793818 COXBURSA331_A0759 Coxiella burnetii RSA 331 prevent-host-death family protein YP_001596570.1 674402 R 360115 CDS YP_001596571.1 161830056 5792987 674664..674810 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 674810 5792987 COXBURSA331_A0760 Coxiella burnetii RSA 331 hypothetical protein YP_001596571.1 674664 D 360115 CDS YP_001596572.1 161830845 5793958 675035..675643 1 NC_010117.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 675643 ribE 5793958 ribE Coxiella burnetii RSA 331 riboflavin synthase subunit alpha YP_001596572.1 675035 D 360115 CDS YP_001596573.1 161830264 5794165 675627..676847 1 NC_010117.1 identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; riboflavin biosynthesis protein RibA 676847 ribAB 5794165 ribAB Coxiella burnetii RSA 331 riboflavin biosynthesis protein RibA YP_001596573.1 675627 D 360115 CDS YP_001596574.1 161830900 5794346 676844..677299 1 NC_010117.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 677299 ribH 5794346 ribH Coxiella burnetii RSA 331 6,7-dimethyl-8-ribityllumazine synthase YP_001596574.1 676844 D 360115 CDS YP_001596575.1 161831036 5793516 677292..678383 1 NC_010117.1 identified by match to protein family HMM PF01594; hypothetical protein 678383 5793516 COXBURSA331_A0764 Coxiella burnetii RSA 331 hypothetical protein YP_001596575.1 677292 D 360115 CDS YP_001596576.1 161831461 5792776 678340..678462 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 678462 5792776 COXBURSA331_A0765 Coxiella burnetii RSA 331 hypothetical protein YP_001596576.1 678340 D 360115 CDS YP_001596577.1 161829898 5794489 678556..678756 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 678756 5794489 COXBURSA331_A0766 Coxiella burnetii RSA 331 hypothetical protein YP_001596577.1 678556 D 360115 CDS YP_001596578.1 161829933 5793352 678822..679364 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 679364 5793352 COXBURSA331_A0767 Coxiella burnetii RSA 331 hypothetical protein YP_001596578.1 678822 D 360115 CDS YP_001596579.1 161831279 5792852 679814..680053 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 680053 5792852 COXBURSA331_A2232 Coxiella burnetii RSA 331 hypothetical protein YP_001596579.1 679814 D 360115 CDS YP_001596580.1 161830122 5792737 680060..680656 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 680656 5792737 COXBURSA331_A0769 Coxiella burnetii RSA 331 hypothetical protein YP_001596580.1 680060 D 360115 CDS YP_001596581.1 161830134 5792691 680680..681162 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 681162 5792691 COXBURSA331_A0770 Coxiella burnetii RSA 331 hypothetical protein YP_001596581.1 680680 D 360115 CDS YP_001596582.1 161830747 5794469 complement(682175..682507) 1 NC_010117.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 682507 5794469 COXBURSA331_A0772 Coxiella burnetii RSA 331 hypothetical protein YP_001596582.1 682175 R 360115 CDS YP_001596583.1 161831096 5793649 complement(682521..683126) 1 NC_010117.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 683126 recR 5793649 recR Coxiella burnetii RSA 331 recombination protein RecR YP_001596583.1 682521 R 360115 CDS YP_001596584.1 161831581 5794304 complement(683138..683569) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 683569 5794304 COXBURSA331_A0774 Coxiella burnetii RSA 331 hypothetical protein YP_001596584.1 683138 R 360115 CDS YP_001596585.1 161829954 5793145 complement(683679..685208) 1 NC_010117.1 identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397; DNA polymerase III subunits gamma and tau 685208 dnaX 5793145 dnaX Coxiella burnetii RSA 331 DNA polymerase III subunits gamma and tau YP_001596585.1 683679 R 360115 CDS YP_001596586.1 161829757 5793459 685774..686184 1 NC_010117.1 hypothetical protein 686184 5793459 COXBURSA331_A0778 Coxiella burnetii RSA 331 hypothetical protein YP_001596586.1 685774 D 360115 CDS YP_001596587.1 161831300 5794044 complement(686181..686345) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 686345 5794044 COXBURSA331_A0777 Coxiella burnetii RSA 331 hypothetical protein YP_001596587.1 686181 R 360115 CDS YP_001596588.1 161830203 5792749 686529..687674 1 NC_010117.1 identified by match to protein family HMM PF01609; IS4 family transposase 687674 5792749 COXBURSA331_A0779 Coxiella burnetii RSA 331 IS4 family transposase YP_001596588.1 686529 D 360115 CDS YP_001596589.1 161830189 5792689 complement(688764..689888) 1 NC_010117.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 689888 dapE 5792689 dapE Coxiella burnetii RSA 331 succinyl-diaminopimelate desuccinylase YP_001596589.1 688764 R 360115 CDS YP_001596590.1 161831330 5793081 complement(689894..690709) 1 NC_010117.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 690709 dapD 5793081 dapD Coxiella burnetii RSA 331 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_001596590.1 689894 R 360115 CDS YP_001596591.1 161830904 5794077 complement(690706..690885) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 690885 5794077 COXBURSA331_A0783 Coxiella burnetii RSA 331 hypothetical protein YP_001596591.1 690706 R 360115 CDS YP_001596592.1 161831124 5794093 690945..691058 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 691058 5794093 COXBURSA331_A0784 Coxiella burnetii RSA 331 hypothetical protein YP_001596592.1 690945 D 360115 CDS YP_001596593.1 161830442 5793255 691336..692571 1 NC_010117.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; putative ATP-dependent RNA helicase rhlE 692571 5793255 COXBURSA331_A0786 Coxiella burnetii RSA 331 putative ATP-dependent RNA helicase rhlE YP_001596593.1 691336 D 360115 CDS YP_001596594.1 161831621 5792714 693009..694442 1 NC_010117.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 694442 5792714 COXBURSA331_A0790 Coxiella burnetii RSA 331 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_001596594.1 693009 D 360115 CDS YP_001596595.1 161830305 5794098 complement(696036..696581) 1 NC_010117.1 identified by match to protein family HMM PF08645; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; histidinol-phosphate phosphatase family protein 696581 5794098 COXBURSA331_A0791 Coxiella burnetii RSA 331 histidinol-phosphate phosphatase family protein YP_001596595.1 696036 R 360115 CDS YP_001596596.1 161830798 5793430 complement(696575..697159) 1 NC_010117.1 SIS domain-containing protein 697159 5793430 COXBURSA331_A0792 Coxiella burnetii RSA 331 SIS domain-containing protein YP_001596596.1 696575 R 360115 CDS YP_001596597.1 161830355 5794504 complement(697169..697912) 1 NC_010117.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase 697912 5794504 COXBURSA331_A0793 Coxiella burnetii RSA 331 putative translaldolase YP_001596597.1 697169 R 360115 CDS YP_001596598.1 161831429 5794089 698090..699103 1 NC_010117.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein 699103 5794089 COXBURSA331_A0794 Coxiella burnetii RSA 331 NAD dependent epimerase/dehydratase family protein YP_001596598.1 698090 D 360115 CDS YP_001596599.1 161831324 5793578 699103..700137 1 NC_010117.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein 700137 5793578 COXBURSA331_A0795 Coxiella burnetii RSA 331 NAD dependent epimerase/dehydratase family protein YP_001596599.1 699103 D 360115 CDS YP_001596600.1 161829792 5793742 700112..701692 1 NC_010117.1 identified by match to protein family HMM PF00294; match to protein family HMM PF01467; match to protein family HMM TIGR00125; putative ADP-heptose synthase 701692 5793742 COXBURSA331_A0796 Coxiella burnetii RSA 331 putative ADP-heptose synthase YP_001596600.1 700112 D 360115 CDS YP_001596601.1 161830194 5793832 701695..702639 1 NC_010117.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase, NAD-binding 702639 5793832 COXBURSA331_A0797 Coxiella burnetii RSA 331 oxidoreductase, NAD-binding YP_001596601.1 701695 D 360115 CDS YP_001596602.1 161831149 5793375 702624..703934 1 NC_010117.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; UDP-glucose/GDP-mannose dehydrogenase family protein 703934 5793375 COXBURSA331_A0798 Coxiella burnetii RSA 331 UDP-glucose/GDP-mannose dehydrogenase family protein YP_001596602.1 702624 D 360115 CDS YP_001596603.1 161831561 5793312 703927..704832 1 NC_010117.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 704832 5793312 COXBURSA331_A0799 Coxiella burnetii RSA 331 NAD-dependent epimerase/dehydratase family protein YP_001596603.1 703927 D 360115 CDS YP_001596604.1 161831481 5792718 704835..705488 1 NC_010117.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; putative methyltransferase 705488 5792718 COXBURSA331_A0801 Coxiella burnetii RSA 331 putative methyltransferase YP_001596604.1 704835 D 360115 CDS YP_001596605.1 161831140 5793433 complement(705485..706672) 1 NC_010117.1 identified by match to protein family HMM TIGR01444; FkbM family methyltransferase 706672 5793433 COXBURSA331_A0800 Coxiella burnetii RSA 331 FkbM family methyltransferase YP_001596605.1 705485 R 360115 CDS YP_001596606.1 161830016 5794472 707086..708504 1 NC_010117.1 sulfotransferase domain-containing protein 708504 5794472 COXBURSA331_A0802 Coxiella burnetii RSA 331 sulfotransferase domain-containing protein YP_001596606.1 707086 D 360115 CDS YP_001596607.1 161830485 5793310 708949..712272 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 712272 5793310 COXBURSA331_A0803 Coxiella burnetii RSA 331 hypothetical protein YP_001596607.1 708949 D 360115 CDS YP_001596608.1 161829944 5793486 712503..713210 1 NC_010117.1 identified by match to protein family HMM PF02780; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha/beta fusion protein 713210 pdhAB 5793486 pdhAB Coxiella burnetii RSA 331 pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha/beta fusion protein YP_001596608.1 712503 D 360115 CDS YP_001596609.1 161831379 5792883 713227..714870 1 NC_010117.1 hypothetical protein 714870 5792883 COXBURSA331_A0805 Coxiella burnetii RSA 331 hypothetical protein YP_001596609.1 713227 D 360115 CDS YP_001596610.1 161830859 5793142 715250..716248 1 NC_010117.1 identified by match to protein family HMM PF01370; GDP-L-fucose synthase 716248 wcaG 5793142 wcaG Coxiella burnetii RSA 331 GDP-L-fucose synthase YP_001596610.1 715250 D 360115 CDS YP_001596611.1 161831044 5793296 716241..717287 1 NC_010117.1 identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase 717287 gmd 5793296 gmd Coxiella burnetii RSA 331 GDP-mannose 4,6-dehydratase YP_001596611.1 716241 D 360115 CDS YP_001596612.1 161830477 5793716 717314..718153 1 NC_010117.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 718153 5793716 COXBURSA331_A0808 Coxiella burnetii RSA 331 glycosyl transferase family protein YP_001596612.1 717314 D 360115 CDS YP_001596613.1 161830182 5792984 718146..719384 1 NC_010117.1 identified by match to protein family HMM PF08421; match to protein family HMM PF08484; NDP-hexose 3-C-methyltransferase TylCIII 719384 5792984 COXBURSA331_A0809 Coxiella burnetii RSA 331 NDP-hexose 3-C-methyltransferase TylCIII YP_001596613.1 718146 D 360115 CDS YP_001596614.1 161831239 5793191 complement(719405..720466) 1 NC_010117.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780; putative pyruvate dehydrogenase (acetyl-transferring) E1 component subunit beta 720466 5793191 COXBURSA331_A0810 Coxiella burnetii RSA 331 putative pyruvate dehydrogenase (acetyl-transferring) E1 component subunit beta YP_001596614.1 719405 R 360115 CDS YP_001596615.1 161830796 5793074 complement(720463..721488) 1 NC_010117.1 identified by match to protein family HMM PF00676; putative pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 721488 5793074 COXBURSA331_A0811 Coxiella burnetii RSA 331 putative pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha YP_001596615.1 720463 R 360115 CDS YP_001596616.1 161831243 5793374 complement(721639..722751) 1 NC_010117.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 722751 5793374 COXBURSA331_A0812 Coxiella burnetii RSA 331 glycosyl transferase family protein YP_001596616.1 721639 R 360115 CDS YP_001596617.1 161830898 5794247 complement(722813..724189) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 724189 5794247 COXBURSA331_A0813 Coxiella burnetii RSA 331 hypothetical protein YP_001596617.1 722813 R 360115 CDS YP_001596618.1 161831502 5794153 complement(724182..725330) 1 NC_010117.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212; DegT/DnrJ/EryC1/StrS aminotransferase family protein 725330 5794153 COXBURSA331_A0814 Coxiella burnetii RSA 331 DegT/DnrJ/EryC1/StrS aminotransferase family protein YP_001596618.1 724182 R 360115 CDS YP_001596619.1 161831341 5792798 complement(725367..726527) 1 NC_010117.1 identified by match to protein family HMM PF01041; DegT/DnrJ/EryC1/StrS aminotransferase family protein 726527 5792798 COXBURSA331_A0815 Coxiella burnetii RSA 331 DegT/DnrJ/EryC1/StrS aminotransferase family protein YP_001596619.1 725367 R 360115 CDS YP_001596620.1 161830145 5794128 complement(726550..727719) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 727719 5794128 COXBURSA331_A0816 Coxiella burnetii RSA 331 hypothetical protein YP_001596620.1 726550 R 360115 CDS YP_001596621.1 161830577 5793773 727922..729481 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 729481 5793773 COXBURSA331_A0817 Coxiella burnetii RSA 331 hypothetical protein YP_001596621.1 727922 D 360115 CDS YP_001596622.1 161831011 5793284 complement(729517..731178) 1 NC_010117.1 in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from Escherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase 731178 sat/cysC 5793284 sat/cysC Coxiella burnetii RSA 331 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase YP_001596622.1 729517 R 360115 CDS YP_001596623.1 161831426 5794450 complement(731256..732080) 1 NC_010117.1 identified by match to protein family HMM PF00459; match to protein family HMM TIGR01331; 3'(2'),5'-bisphosphate nucleotidase 732080 cysQ2 5794450 cysQ2 Coxiella burnetii RSA 331 3'(2'),5'-bisphosphate nucleotidase YP_001596623.1 731256 R 360115 CDS YP_001596624.1 161831050 5794477 732226..732975 1 NC_010117.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 732975 5794477 COXBURSA331_A0820 Coxiella burnetii RSA 331 short chain dehydrogenase/reductase family oxidoreductase YP_001596624.1 732226 D 360115 CDS YP_001596625.1 161831456 5793922 732985..733848 1 NC_010117.1 identified by match to protein family HMM PF01061; putative lipopolysaccharide/O-antigen ABC transporter permease 733848 5793922 COXBURSA331_A0821 Coxiella burnetii RSA 331 putative lipopolysaccharide/O-antigen ABC transporter permease YP_001596625.1 732985 D 360115 CDS YP_001596626.1 161831345 5794514 733858..734634 1 NC_010117.1 identified by match to protein family HMM PF00005; lipopolysaccharide/O-antigen ABC transporter ATP-binding protein 734634 5794514 COXBURSA331_A0822 Coxiella burnetii RSA 331 lipopolysaccharide/O-antigen ABC transporter ATP-binding protein YP_001596626.1 733858 D 360115 CDS YP_001596627.1 161829828 5793842 complement(735346..735633) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 735633 5793842 COXBURSA331_A0824 Coxiella burnetii RSA 331 hypothetical protein YP_001596627.1 735346 R 360115 CDS YP_001596628.1 161830120 5793325 complement(736516..736806) 1 NC_010117.1 permease PerM, truncation 736806 5793325 COXBURSA331_A0826 Coxiella burnetii RSA 331 permease PerM, truncation YP_001596628.1 736516 R 360115 CDS YP_001596629.1 161831141 5794503 complement(737396..738229) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 738229 5794503 COXBURSA331_A0828 Coxiella burnetii RSA 331 hypothetical protein YP_001596629.1 737396 R 360115 CDS YP_001596630.1 161829902 5792985 complement(738537..738629) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 738629 5792985 COXBURSA331_A0829 Coxiella burnetii RSA 331 hypothetical protein YP_001596630.1 738537 R 360115 CDS YP_001596631.1 161830987 5793008 complement(739681..740316) 1 NC_010117.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281; transcriptional regulator 740316 5793008 COXBURSA331_A0830 Coxiella burnetii RSA 331 transcriptional regulator YP_001596631.1 739681 R 360115 CDS YP_001596632.1 161831409 5793022 complement(740375..741703) 1 NC_010117.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; putative iorganic phosphate transporter 741703 5793022 COXBURSA331_A0831 Coxiella burnetii RSA 331 putative iorganic phosphate transporter YP_001596632.1 740375 R 360115 CDS YP_001596633.1 161830228 5793189 complement(741675..742058) 1 NC_010117.1 hypothetical protein 742058 5793189 COXBURSA331_A0832 Coxiella burnetii RSA 331 hypothetical protein YP_001596633.1 741675 R 360115 CDS YP_001596634.1 161830571 5793619 complement(743309..744229) 1 NC_010117.1 identified by match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 744229 5793619 COXBURSA331_A0834 Coxiella burnetii RSA 331 pyridine nucleotide-disulfide oxidoreductase YP_001596634.1 743309 R 360115 CDS YP_001596635.1 161831513 5794499 746280..746564 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 746564 5794499 COXBURSA331_A0836 Coxiella burnetii RSA 331 hypothetical protein YP_001596635.1 746280 D 360115 CDS YP_001596636.1 161830360 5792948 746567..746986 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 746986 5792948 COXBURSA331_A0837 Coxiella burnetii RSA 331 hypothetical protein YP_001596636.1 746567 D 360115 CDS YP_001596637.1 161831325 5792953 complement(747042..747923) 1 NC_010117.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; agmatinase 747923 speB 5792953 speB Coxiella burnetii RSA 331 agmatinase YP_001596637.1 747042 R 360115 CDS YP_001596638.1 161830040 5794047 complement(747923..748981) 1 NC_010117.1 transforms a conserved lysine residue of initiation factor 5A into deoxyhypusine; deoxyhypusine synthase-like protein 748981 5794047 COXBURSA331_A0839 Coxiella burnetii RSA 331 deoxyhypusine synthase-like protein YP_001596638.1 747923 R 360115 CDS YP_001596639.1 161830669 5793872 complement(749008..750198) 1 NC_010117.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; putative decarboxylase, pyridoxal-dependent 750198 5793872 COXBURSA331_A0840 Coxiella burnetii RSA 331 putative decarboxylase, pyridoxal-dependent YP_001596639.1 749008 R 360115 CDS YP_001596640.1 161829793 5792947 750317..750484 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 750484 5792947 COXBURSA331_A0842 Coxiella burnetii RSA 331 hypothetical protein YP_001596640.1 750317 D 360115 CDS YP_001596641.1 161830719 5793004 751593..752792 1 NC_010117.1 identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 752792 5793004 COXBURSA331_A0843 Coxiella burnetii RSA 331 N-acetylmuramoyl-L-alanine amidase YP_001596641.1 751593 D 360115 CDS YP_001596642.1 161830656 5794198 752872..754881 1 NC_010117.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229; PAS/histidine kinase/ATPase domain-containing protein 754881 5794198 COXBURSA331_A0844 Coxiella burnetii RSA 331 PAS/histidine kinase/ATPase domain-containing protein YP_001596642.1 752872 D 360115 CDS YP_001596643.1 161830565 5794789 754945..756669 1 NC_010117.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 756669 mutL 5794789 mutL Coxiella burnetii RSA 331 DNA mismatch repair protein YP_001596643.1 754945 D 360115 CDS YP_001596644.1 161830090 5794620 756673..757608 1 NC_010117.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 757608 miaA 5794620 miaA Coxiella burnetii RSA 331 tRNA delta(2)-isopentenylpyrophosphate transferase YP_001596644.1 756673 D 360115 CDS YP_001596645.1 161830944 5794721 757723..757995 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 757995 5794721 COXBURSA331_A0848 Coxiella burnetii RSA 331 hypothetical protein YP_001596645.1 757723 D 360115 CDS YP_001596646.1 161831491 5792837 complement(757992..759011) 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 759011 5792837 COXBURSA331_A0847 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001596646.1 757992 R 360115 CDS YP_001596647.1 161831048 5794797 759251..759520 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 759520 5794797 COXBURSA331_A0849 Coxiella burnetii RSA 331 hypothetical protein YP_001596647.1 759251 D 360115 CDS YP_001596648.1 161830871 5794802 759593..760075 1 NC_010117.1 identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 760075 5794802 COXBURSA331_A0850 Coxiella burnetii RSA 331 ErfK/YbiS/YcfS/YnhG family protein YP_001596648.1 759593 D 360115 CDS YP_001596649.1 161830334 5794881 760153..760749 1 NC_010117.1 identified by match to protein family HMM PF06041; hypothetical protein 760749 5794881 COXBURSA331_A0851 Coxiella burnetii RSA 331 hypothetical protein YP_001596649.1 760153 D 360115 CDS YP_001596650.1 161831032 5794857 760757..761095 1 NC_010117.1 identified by match to protein family HMM PF08850; hypothetical protein 761095 5794857 COXBURSA331_A0852 Coxiella burnetii RSA 331 hypothetical protein YP_001596650.1 760757 D 360115 CDS YP_001596651.1 161831283 5794827 761099..762040 1 NC_010117.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 762040 nagZ 5794827 nagZ Coxiella burnetii RSA 331 beta-hexosaminidase YP_001596651.1 761099 D 360115 CDS YP_001596652.1 161829875 5794783 762182..763201 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 763201 5794783 COXBURSA331_A0854 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001596652.1 762182 D 360115 CDS YP_001596653.1 161830163 5794805 complement(763227..763469) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 763469 5794805 COXBURSA331_A0855 Coxiella burnetii RSA 331 hypothetical protein YP_001596653.1 763227 R 360115 CDS YP_001596654.1 161830611 5794810 763476..763601 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 763601 5794810 COXBURSA331_A0856 Coxiella burnetii RSA 331 hypothetical protein YP_001596654.1 763476 D 360115 CDS YP_001596655.1 161830844 5794817 763688..764839 1 NC_010117.1 identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel (MscS) family protein 764839 5794817 COXBURSA331_A0857 Coxiella burnetii RSA 331 small conductance mechanosensitive ion channel (MscS) family protein YP_001596655.1 763688 D 360115 CDS YP_001596656.1 161831203 5794816 764826..765386 1 NC_010117.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 765386 5794816 COXBURSA331_A0858 Coxiella burnetii RSA 331 hypoxanthine-guanine phosphoribosyltransferase YP_001596656.1 764826 D 360115 CDS YP_001596657.1 161829959 5794822 complement(765408..765914) 1 NC_010117.1 hypothetical protein 765914 5794822 COXBURSA331_A0859 Coxiella burnetii RSA 331 hypothetical protein YP_001596657.1 765408 R 360115 CDS YP_001596658.1 161830521 5794824 complement(765918..767075) 1 NC_010117.1 identified by match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449; queuine tRNA-ribosyltransferase 767075 tgt 5794824 tgt Coxiella burnetii RSA 331 queuine tRNA-ribosyltransferase YP_001596658.1 765918 R 360115 CDS YP_001596659.1 161830380 5794828 complement(767176..767307) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 767307 5794828 COXBURSA331_A0861 Coxiella burnetii RSA 331 hypothetical protein YP_001596659.1 767176 R 360115 CDS YP_001596660.1 161830453 5794825 767258..767668 1 NC_010117.1 identified by match to protein family HMM PF07681; DoxX family membrane protein 767668 5794825 COXBURSA331_A0862 Coxiella burnetii RSA 331 DoxX family membrane protein YP_001596660.1 767258 D 360115 CDS YP_001596661.1 161831016 5794837 complement(767686..768504) 1 NC_010117.1 identified by match to protein family HMM PF00211; adenylate/guanylate cyclase family protein 768504 5794837 COXBURSA331_A0863 Coxiella burnetii RSA 331 adenylate/guanylate cyclase family protein YP_001596661.1 767686 R 360115 CDS YP_001596662.1 161831248 5794852 complement(768529..769758) 1 NC_010117.1 identified by match to protein family HMM PF07695; intracellular signaling protein 769758 5794852 COXBURSA331_A0864 Coxiella burnetii RSA 331 intracellular signaling protein YP_001596662.1 768529 R 360115 CDS YP_001596663.1 161830822 5794880 complement(770333..771643) 1 NC_010117.1 hypothetical protein 771643 5794880 COXBURSA331_A0866 Coxiella burnetii RSA 331 hypothetical protein YP_001596663.1 770333 R 360115 CDS YP_001596664.1 161829910 5794882 771798..772568 1 NC_010117.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 772568 5794882 COXBURSA331_A0868 Coxiella burnetii RSA 331 C32 tRNA thiolase YP_001596664.1 771798 D 360115 CDS YP_001596665.1 161829747 5794733 774404..774958 1 NC_010117.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase 774958 5794733 COXBURSA331_A0869 Coxiella burnetii RSA 331 2'-5' RNA ligase YP_001596665.1 774404 D 360115 CDS YP_001596666.1 161830251 5794820 774986..775270 1 NC_010117.1 hypothetical protein 775270 5794820 COXBURSA331_A0870 Coxiella burnetii RSA 331 hypothetical protein YP_001596666.1 774986 D 360115 CDS YP_001596667.1 161831569 5794845 complement(775276..776682) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 776682 5794845 COXBURSA331_A0871 Coxiella burnetii RSA 331 hypothetical protein YP_001596667.1 775276 R 360115 CDS YP_001596668.1 161831157 5794858 complement(776816..777241) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 777241 5794858 COXBURSA331_A0872 Coxiella burnetii RSA 331 hypothetical protein YP_001596668.1 776816 R 360115 CDS YP_001596669.1 161830522 5793613 777674..778474 1 NC_010117.1 identified by match to protein family HMM PF02616; segregation and condensation protein A 778474 scpA 5793613 scpA Coxiella burnetii RSA 331 segregation and condensation protein A YP_001596669.1 777674 D 360115 CDS YP_001596670.1 161830861 5793097 778479..779108 1 NC_010117.1 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281; segregation and condensation protein B 779108 scpB 5793097 scpB Coxiella burnetii RSA 331 segregation and condensation protein B YP_001596670.1 778479 D 360115 CDS YP_001596671.1 161829731 5794749 779118..779852 1 NC_010117.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridine synthase family protein 779852 5794749 COXBURSA331_A0877 Coxiella burnetii RSA 331 RNA pseudouridine synthase family protein YP_001596671.1 779118 D 360115 CDS YP_001596672.1 161831386 5794761 complement(779823..781109) 1 NC_010117.1 identified by match to protein family HMM PF08014; match to protein family HMM TIGR02421; hypothetical protein 781109 5794761 COXBURSA331_A0876 Coxiella burnetii RSA 331 hypothetical protein YP_001596672.1 779823 R 360115 CDS YP_001596673.1 161831167 5794719 complement(781862..784441) 1 NC_010117.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 784441 mutS 5794719 mutS Coxiella burnetii RSA 331 DNA mismatch repair protein MutS YP_001596673.1 781862 R 360115 CDS YP_001596674.1 161830761 5793059 784612..785112 1 NC_010117.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence/damage-inducible protein CinA 785112 cinA 5793059 cinA Coxiella burnetii RSA 331 competence/damage-inducible protein CinA YP_001596674.1 784612 D 360115 CDS YP_001596675.1 161830332 5792854 785200..786231 1 NC_010117.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 786231 recA 5792854 recA Coxiella burnetii RSA 331 recombinase A YP_001596675.1 785200 D 360115 CDS YP_001596676.1 161829922 5793233 786228..786662 1 NC_010117.1 identified by match to protein family HMM PF02631; regulatory protein RecX 786662 recX 5793233 recX Coxiella burnetii RSA 331 regulatory protein RecX YP_001596676.1 786228 D 360115 CDS YP_001596677.1 161830958 5794681 786655..789252 1 NC_010117.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 789252 alaS 5794681 alaS Coxiella burnetii RSA 331 alanyl-tRNA synthetase YP_001596677.1 786655 D 360115 CDS YP_001596678.1 161831031 5794897 789258..790487 1 NC_010117.1 identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00657; aspartate kinase 790487 lysC 5794897 lysC Coxiella burnetii RSA 331 aspartate kinase YP_001596678.1 789258 D 360115 CDS YP_001596679.1 161830608 5793665 790627..790839 1 NC_010117.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 790839 csrA1 5793665 csrA1 Coxiella burnetii RSA 331 carbon storage regulator YP_001596679.1 790627 D 360115 CDS YP_001596680.1 161831214 5793414 793137..793718 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 793718 5793414 COXBURSA331_A0888 Coxiella burnetii RSA 331 hypothetical protein YP_001596680.1 793137 D 360115 CDS YP_001596681.1 161830779 5794600 793791..793949 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 793949 5794600 COXBURSA331_A0890 Coxiella burnetii RSA 331 hypothetical protein YP_001596681.1 793791 D 360115 CDS YP_001596682.1 161830585 5793115 795831..795944 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 795944 5793115 COXBURSA331_A0893 Coxiella burnetii RSA 331 hypothetical protein YP_001596682.1 795831 D 360115 CDS YP_001596683.1 161830045 5794009 complement(796014..796994) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 796994 5794009 COXBURSA331_A0894 Coxiella burnetii RSA 331 hypothetical protein YP_001596683.1 796014 R 360115 CDS YP_001596684.1 161831339 5793476 complement(797084..797761) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 797761 5793476 COXBURSA331_A0895 Coxiella burnetii RSA 331 hypothetical protein YP_001596684.1 797084 R 360115 CDS YP_001596685.1 161830925 5793369 798469..799113 1 NC_010117.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 799113 5793369 COXBURSA331_A0896 Coxiella burnetii RSA 331 LuxR family transcriptional regulator YP_001596685.1 798469 D 360115 CDS YP_001596686.1 161830139 5792857 complement(799156..799557) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 799557 5792857 COXBURSA331_A0897 Coxiella burnetii RSA 331 hypothetical protein YP_001596686.1 799156 R 360115 CDS YP_001596687.1 161829725 5794529 799551..799706 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 799706 5794529 COXBURSA331_A0898 Coxiella burnetii RSA 331 hypothetical protein YP_001596687.1 799551 D 360115 CDS YP_001596688.1 161831008 5792809 799714..800610 1 NC_010117.1 identified by match to protein family HMM PF00116; match to protein family HMM PF06481; cytochrome o ubiquinol oxidase subunit II 800610 cyoA 5792809 cyoA Coxiella burnetii RSA 331 cytochrome o ubiquinol oxidase subunit II YP_001596688.1 799714 D 360115 CDS YP_001596689.1 161830575 5793470 800630..802636 1 NC_010117.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843; cytochrome o ubiquinol oxidase subunit I 802636 cyoB 5793470 cyoB Coxiella burnetii RSA 331 cytochrome o ubiquinol oxidase subunit I YP_001596689.1 800630 D 360115 CDS YP_001596690.1 161830988 5792999 802633..803229 1 NC_010117.1 identified by match to protein family HMM PF00510; match to protein family HMM TIGR02842; cytochrome o ubiquinol oxidase subunit III 803229 cyoC 5792999 cyoC Coxiella burnetii RSA 331 cytochrome o ubiquinol oxidase subunit III YP_001596690.1 802633 D 360115 CDS YP_001596691.1 161830823 5793633 803303..803437 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 803437 5793633 COXBURSA331_A0902 Coxiella burnetii RSA 331 hypothetical protein YP_001596691.1 803303 D 360115 CDS YP_001596692.1 161830255 5793890 complement(805404..805673) 1 NC_010117.1 isochorismatase family protein 805673 5793890 COXBURSA331_A0906 Coxiella burnetii RSA 331 isochorismatase family protein YP_001596692.1 805404 R 360115 CDS YP_001596693.1 161829763 5792924 complement(805670..807076) 1 NC_010117.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 807076 5792924 COXBURSA331_A0907 Coxiella burnetii RSA 331 nicotinate phosphoribosyltransferase YP_001596693.1 805670 R 360115 CDS YP_001596694.1 161831362 5792940 807198..807758 1 NC_010117.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 807758 pgsA 5792940 pgsA Coxiella burnetii RSA 331 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001596694.1 807198 D 360115 CDS YP_001596695.1 161830854 5793614 complement(807950..808513) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 808513 5793614 COXBURSA331_A0910 Coxiella burnetii RSA 331 hypothetical protein YP_001596695.1 807950 R 360115 CDS YP_001596696.1 161829970 5793198 complement(808706..808828) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 808828 5793198 COXBURSA331_A0911 Coxiella burnetii RSA 331 hypothetical protein YP_001596696.1 808706 R 360115 CDS YP_001596697.1 161830681 5792970 complement(808807..809241) 1 NC_010117.1 identified by match to protein family HMM PF00959; phage lysozyme 809241 5792970 COXBURSA331_A0912 Coxiella burnetii RSA 331 phage lysozyme YP_001596697.1 808807 R 360115 CDS YP_001596698.1 161831216 5793837 811348..811989 1 NC_010117.1 hypothetical protein 811989 5793837 COXBURSA331_A0914 Coxiella burnetii RSA 331 hypothetical protein YP_001596698.1 811348 D 360115 CDS YP_001596699.1 161830805 5793366 complement(812005..813396) 1 NC_010117.1 identified by match to protein family HMM PF05872; hypothetical protein 813396 5793366 COXBURSA331_A0915 Coxiella burnetii RSA 331 hypothetical protein YP_001596699.1 812005 R 360115 CDS YP_001596700.1 161831319 5792954 complement(818444..818743) 1 NC_010117.1 identified by match to protein family HMM PF01909; putative nucleotidyltransferase 818743 5792954 COXBURSA331_A0918 Coxiella burnetii RSA 331 putative nucleotidyltransferase YP_001596700.1 818444 R 360115 CDS YP_001596701.1 161831519 5792805 819338..819589 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 819589 5792805 COXBURSA331_A0920 Coxiella burnetii RSA 331 hypothetical protein YP_001596701.1 819338 D 360115 CDS YP_001596702.1 161829957 5792789 complement(819878..820423) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 820423 5792789 COXBURSA331_A0921 Coxiella burnetii RSA 331 hypothetical protein YP_001596702.1 819878 R 360115 CDS YP_001596703.1 161830654 5793822 complement(820888..821082) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 821082 5793822 COXBURSA331_A0922 Coxiella burnetii RSA 331 hypothetical protein YP_001596703.1 820888 R 360115 CDS YP_001596704.1 161831060 5793143 821489..821617 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 821617 5793143 COXBURSA331_A0923 Coxiella burnetii RSA 331 hypothetical protein YP_001596704.1 821489 D 360115 CDS YP_001596705.1 161829795 5793555 822028..822147 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 822147 5793555 COXBURSA331_A0927 Coxiella burnetii RSA 331 hypothetical protein YP_001596705.1 822028 D 360115 CDS YP_001596706.1 161830343 5793928 complement(822110..822295) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 822295 5793928 COXBURSA331_A0926 Coxiella burnetii RSA 331 hypothetical protein YP_001596706.1 822110 R 360115 CDS YP_001596707.1 161829971 5793638 complement(822598..824301) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 824301 5793638 COXBURSA331_A0928 Coxiella burnetii RSA 331 hypothetical protein YP_001596707.1 822598 R 360115 CDS YP_001596708.1 161830560 5793767 complement(825977..826291) 1 NC_010117.1 identified by match to protein family HMM PF02641; hypothetical protein 826291 5793767 COXBURSA331_A0930 Coxiella burnetii RSA 331 hypothetical protein YP_001596708.1 825977 R 360115 CDS YP_001596709.1 161831627 5792939 complement(826662..827990) 1 NC_010117.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine-8-amino-7-oxononanoate transaminase 827990 bioA 5792939 bioA Coxiella burnetii RSA 331 adenosylmethionine-8-amino-7-oxononanoate transaminase YP_001596709.1 826662 R 360115 CDS YP_001596710.1 161829732 5792907 828359..829324 1 NC_010117.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 829324 bioB 5792907 bioB Coxiella burnetii RSA 331 biotin synthase YP_001596710.1 828359 D 360115 CDS YP_001596711.1 161831076 5792973 829311..830465 1 NC_010117.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00202; 8-amino-7-oxononanoate synthase 830465 bioF 5792973 bioF Coxiella burnetii RSA 331 8-amino-7-oxononanoate synthase YP_001596711.1 829311 D 360115 CDS YP_001596712.1 161830837 5793321 830459..831163 1 NC_010117.1 identified by match to protein family HMM PF00561; putative carboxylesterase BioH 831163 5793321 COXBURSA331_A0935 Coxiella burnetii RSA 331 putative carboxylesterase BioH YP_001596712.1 830459 D 360115 CDS YP_001596713.1 161831196 5794325 831156..831899 1 NC_010117.1 identified by match to protein family HMM PF08241; match to protein family HMM TIGR02072; putative biotin biosynthesis protein BioC 831899 5794325 COXBURSA331_A0936 Coxiella burnetii RSA 331 putative biotin biosynthesis protein BioC YP_001596713.1 831156 D 360115 CDS YP_001596714.1 161830514 5794244 complement(832552..833523) 1 NC_010117.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121; bifunctional protein birA 833523 birA 5794244 birA Coxiella burnetii RSA 331 bifunctional protein birA YP_001596714.1 832552 R 360115 CDS YP_001596715.1 161830817 5793496 833646..834890 1 NC_010117.1 identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212; LolC/E family lipoprotein releasing system, transmembrane protein 834890 5793496 COXBURSA331_A0938 Coxiella burnetii RSA 331 LolC/E family lipoprotein releasing system, transmembrane protein YP_001596715.1 833646 D 360115 CDS YP_001596716.1 161831600 5793847 834883..835584 1 NC_010117.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02211; lipoprotein releasing system, ATP-binding protein 835584 lolD 5793847 lolD Coxiella burnetii RSA 331 lipoprotein releasing system, ATP-binding protein YP_001596716.1 834883 D 360115 CDS YP_001596717.1 161830086 5793536 835581..836945 1 NC_010117.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156; GTP-binding proten HflX 836945 hflX 5793536 hflX Coxiella burnetii RSA 331 GTP-binding proten HflX YP_001596717.1 835581 D 360115 CDS YP_001596718.1 161829765 5793949 836966..838273 1 NC_010117.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 838273 purA 5793949 purA Coxiella burnetii RSA 331 adenylosuccinate synthetase YP_001596718.1 836966 D 360115 CDS YP_001596719.1 161830214 5792779 complement(838306..838419) 1 NC_010117.1 putative lipoprotein 838419 5792779 COXBURSA331_A0942 Coxiella burnetii RSA 331 putative lipoprotein YP_001596719.1 838306 R 360115 CDS YP_001596720.1 161831268 5792831 complement(838431..839348) 1 NC_010117.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 839348 cyoE 5792831 cyoE Coxiella burnetii RSA 331 protoheme IX farnesyltransferase YP_001596720.1 838431 R 360115 CDS YP_001596721.1 161829863 5792906 complement(839345..839614) 1 NC_010117.1 identified by match to protein family HMM PF02790; putative cytochrome c oxidase, membrane subunit 839614 5792906 COXBURSA331_A0944 Coxiella burnetii RSA 331 putative cytochrome c oxidase, membrane subunit YP_001596721.1 839345 R 360115 CDS YP_001596722.1 161830427 5792910 complement(839947..840459) 1 NC_010117.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 840459 def 5792910 def Coxiella burnetii RSA 331 peptide deformylase YP_001596722.1 839947 R 360115 CDS YP_001596723.1 161830950 5793005 840688..841143 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 841143 5793005 COXBURSA331_A0947 Coxiella burnetii RSA 331 hypothetical protein YP_001596723.1 840688 D 360115 CDS YP_001596724.1 161831557 5792778 complement(843858..844535) 1 NC_010117.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 844535 ung 5792778 ung Coxiella burnetii RSA 331 uracil-DNA glycosylase YP_001596724.1 843858 R 360115 CDS YP_001596725.1 161830475 5793281 complement(844548..845333) 1 NC_010117.1 identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413; rare lipoprotein A family protein 845333 5793281 COXBURSA331_A0952 Coxiella burnetii RSA 331 rare lipoprotein A family protein YP_001596725.1 844548 R 360115 CDS YP_001596726.1 161830029 5793182 845379..846191 1 NC_010117.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase 846191 5793182 COXBURSA331_A0953 Coxiella burnetii RSA 331 RNA methyltransferase YP_001596726.1 845379 D 360115 CDS YP_001596727.1 161830374 5793139 complement(846248..847006) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 847006 5793139 COXBURSA331_A0954 Coxiella burnetii RSA 331 hypothetical protein YP_001596727.1 846248 R 360115 CDS YP_001596728.1 161829716 5792915 complement(847035..847811) 1 NC_010117.1 identified by match to protein family HMM PF01210; match to protein family HMM PF02153; prephenate dehydrogenase 847811 5792915 COXBURSA331_A0955 Coxiella burnetii RSA 331 prephenate dehydrogenase YP_001596728.1 847035 R 360115 CDS YP_001596729.1 161831590 5792889 complement(847795..848670) 1 NC_010117.1 identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM TIGR01807; chorismate mutase 848670 pheA 5792889 pheA Coxiella burnetii RSA 331 chorismate mutase YP_001596729.1 847795 R 360115 CDS YP_001596730.1 161831094 5793172 complement(848660..849742) 1 NC_010117.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 849742 5793172 COXBURSA331_A0957 Coxiella burnetii RSA 331 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001596730.1 848660 R 360115 CDS YP_001596731.1 161831134 5793039 850046..850324 1 NC_010117.1 putative lipoprotein 850324 5793039 COXBURSA331_A0958 Coxiella burnetii RSA 331 putative lipoprotein YP_001596731.1 850046 D 360115 CDS YP_001596732.1 161830215 5793962 850413..850715 1 NC_010117.1 putative lipoprotein 850715 5793962 COXBURSA331_A0959 Coxiella burnetii RSA 331 putative lipoprotein YP_001596732.1 850413 D 360115 CDS YP_001596733.1 161830007 5794171 850630..850773 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 850773 5794171 COXBURSA331_A0961 Coxiella burnetii RSA 331 hypothetical protein YP_001596733.1 850630 D 360115 CDS YP_001596734.1 161830548 5794243 complement(850746..851195) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 851195 5794243 COXBURSA331_A0960 Coxiella burnetii RSA 331 hypothetical protein YP_001596734.1 850746 R 360115 CDS YP_001596735.1 161830983 5793706 complement(851246..853231) 1 NC_010117.1 identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; biotin carboxylase 853231 5793706 COXBURSA331_A0962 Coxiella burnetii RSA 331 biotin carboxylase YP_001596735.1 851246 R 360115 CDS YP_001596736.1 161830807 5793151 complement(853233..854003) 1 NC_010117.1 identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein 854003 5793151 COXBURSA331_A0963 Coxiella burnetii RSA 331 enoyl-CoA hydratase/isomerase family protein YP_001596736.1 853233 R 360115 CDS YP_001596737.1 161830106 5793186 complement(854023..855630) 1 NC_010117.1 identified by match to protein family HMM PF01039; acyl-CoA biotin-dependent carboxyltransferase 855630 5793186 COXBURSA331_A0964 Coxiella burnetii RSA 331 acyl-CoA biotin-dependent carboxyltransferase YP_001596737.1 854023 R 360115 CDS YP_001596738.1 161831168 5792823 complement(855712..856896) 1 NC_010117.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase 856896 5792823 COXBURSA331_A0965 Coxiella burnetii RSA 331 acetyl-CoA acetyltransferase YP_001596738.1 855712 R 360115 CDS YP_001596739.1 161830802 5794332 complement(856896..858059) 1 NC_010117.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 858059 5794332 COXBURSA331_A0966 Coxiella burnetii RSA 331 acyl-CoA dehydrogenase YP_001596739.1 856896 R 360115 CDS YP_001596740.1 161830531 5794391 858150..858842 1 NC_010117.1 hypothetical protein 858842 5794391 COXBURSA331_A0967 Coxiella burnetii RSA 331 hypothetical protein YP_001596740.1 858150 D 360115 CDS YP_001596741.1 161830095 5794521 858839..859882 1 NC_010117.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 859882 pyrD 5794521 pyrD Coxiella burnetii RSA 331 dihydroorotate dehydrogenase 2 YP_001596741.1 858839 D 360115 CDS YP_001596742.1 161829900 5792904 complement(859879..860934) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 860934 5792904 COXBURSA331_A0968 Coxiella burnetii RSA 331 hypothetical protein YP_001596742.1 859879 R 360115 CDS YP_001596743.1 161831624 5793248 complement(860931..861053) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 861053 5793248 COXBURSA331_A0970 Coxiella burnetii RSA 331 hypothetical protein YP_001596743.1 860931 R 360115 CDS YP_001596744.1 161831391 5794324 861052..861582 1 NC_010117.1 putative phospholipase D 861582 5794324 COXBURSA331_A0971 Coxiella burnetii RSA 331 putative phospholipase D YP_001596744.1 861052 D 360115 CDS YP_001596745.1 161830886 5793749 complement(861708..861809) 1 NC_010117.1 identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106; cyd operon protein YbgT 861809 5793749 COXBURSA331_A0972 Coxiella burnetii RSA 331 cyd operon protein YbgT YP_001596745.1 861708 R 360115 CDS YP_001596746.1 161830183 5793158 complement(861823..862956) 1 NC_010117.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase, subunit II 862956 cydB1 5793158 cydB1 Coxiella burnetii RSA 331 cytochrome d ubiquinol oxidase, subunit II YP_001596746.1 861823 R 360115 CDS YP_001596747.1 161829766 5794149 complement(862953..864518) 1 NC_010117.1 identified by match to protein family HMM PF01654; cytochrome d ubiquinol oxidase, subunit I 864518 cydA1 5794149 cydA1 Coxiella burnetii RSA 331 cytochrome d ubiquinol oxidase, subunit I YP_001596747.1 862953 R 360115 CDS YP_001596748.1 161830952 5794151 complement(864515..864703) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 864703 5794151 COXBURSA331_A0975 Coxiella burnetii RSA 331 hypothetical protein YP_001596748.1 864515 R 360115 CDS YP_001596749.1 161831574 5793862 complement(864705..864878) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 864878 5793862 COXBURSA331_A0976 Coxiella burnetii RSA 331 hypothetical protein YP_001596749.1 864705 R 360115 CDS YP_001596750.1 161829846 5793723 complement(864988..865869) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 865869 5793723 COXBURSA331_A0977 Coxiella burnetii RSA 331 hypothetical protein YP_001596750.1 864988 R 360115 CDS YP_001596751.1 161830386 5793735 865972..866427 1 NC_010117.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; anti-oxidant AhpCTSA family protein 866427 5793735 COXBURSA331_A0978 Coxiella burnetii RSA 331 anti-oxidant AhpCTSA family protein YP_001596751.1 865972 D 360115 CDS YP_001596752.1 161829895 5794502 866427..867125 1 NC_010117.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 867125 5794502 COXBURSA331_A0979 Coxiella burnetii RSA 331 short chain dehydrogenase/reductase family oxidoreductase YP_001596752.1 866427 D 360115 CDS YP_001596753.1 161830351 5794246 complement(867136..867306) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 867306 5794246 COXBURSA331_A0980 Coxiella burnetii RSA 331 hypothetical protein YP_001596753.1 867136 R 360115 CDS YP_001596754.1 161830755 5794005 complement(867319..867870) 1 NC_010117.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883; DNA-binding protein 867870 5794005 COXBURSA331_A0981 Coxiella burnetii RSA 331 DNA-binding protein YP_001596754.1 867319 R 360115 CDS YP_001596755.1 161831605 5793685 complement(872801..874045) 1 NC_010117.1 hypothetical protein 874045 5793685 COXBURSA331_A0983 Coxiella burnetii RSA 331 hypothetical protein YP_001596755.1 872801 R 360115 CDS YP_001596756.1 161831506 5792981 874241..874903 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 874903 5792981 COXBURSA331_A0985 Coxiella burnetii RSA 331 hypothetical protein YP_001596756.1 874241 D 360115 CDS YP_001596757.1 161830115 5792976 875040..875693 1 NC_010117.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 875693 5792976 COXBURSA331_A0986 Coxiella burnetii RSA 331 LuxR family transcriptional regulator YP_001596757.1 875040 D 360115 CDS YP_001596758.1 161830177 5792762 876507..877820 1 NC_010117.1 identified by match to protein family HMM PF00324; amino acid permease family protein 877820 5792762 COXBURSA331_A0988 Coxiella burnetii RSA 331 amino acid permease family protein YP_001596758.1 876507 D 360115 CDS YP_001596759.1 161829870 5794411 877909..878592 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 878592 5794411 COXBURSA331_A0989 Coxiella burnetii RSA 331 hypothetical protein YP_001596759.1 877909 D 360115 CDS YP_001596760.1 161831231 5792905 882898..883266 1 NC_010117.1 hypothetical protein 883266 5792905 COXBURSA331_A0992 Coxiella burnetii RSA 331 hypothetical protein YP_001596760.1 882898 D 360115 CDS YP_001596761.1 161830534 5793260 complement(883406..883861) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 883861 5793260 COXBURSA331_A0994 Coxiella burnetii RSA 331 hypothetical protein YP_001596761.1 883406 R 360115 CDS YP_001596762.1 161829831 5793066 885409..886389 1 NC_010117.1 identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550; death-on-curing family protein 886389 5793066 COXBURSA331_A0996 Coxiella burnetii RSA 331 death-on-curing family protein YP_001596762.1 885409 D 360115 CDS YP_001596763.1 161831511 5793092 886514..887359 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 887359 5793092 COXBURSA331_A0997 Coxiella burnetii RSA 331 hypothetical protein YP_001596763.1 886514 D 360115 CDS YP_001596764.1 161830918 5794398 complement(887513..887686) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 887686 5794398 COXBURSA331_A0998 Coxiella burnetii RSA 331 hypothetical protein YP_001596764.1 887513 R 360115 CDS YP_001596765.1 161830580 5793114 complement(888189..888563) 1 NC_010117.1 identified by match to protein family HMM PF00581; putative sulfurtransferase 888563 5793114 COXBURSA331_A1000 Coxiella burnetii RSA 331 putative sulfurtransferase YP_001596765.1 888189 R 360115 CDS YP_001596766.1 161830996 5793212 888705..889088 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 889088 5793212 COXBURSA331_A1001 Coxiella burnetii RSA 331 hypothetical protein YP_001596766.1 888705 D 360115 CDS YP_001596767.1 161831615 5793870 complement(889090..889362) 1 NC_010117.1 identified by match to protein family HMM PF04362; hypothetical protein 889362 5793870 COXBURSA331_A1002 Coxiella burnetii RSA 331 hypothetical protein YP_001596767.1 889090 R 360115 CDS YP_001596768.1 161830170 5793964 complement(889359..890423) 1 NC_010117.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase 890423 mutY 5793964 mutY Coxiella burnetii RSA 331 A/G-specific adenine glycosylase YP_001596768.1 889359 R 360115 CDS YP_001596769.1 161830320 5793965 complement(890429..891937) 1 NC_010117.1 identified by match to protein family HMM PF05170; AsmA family protein 891937 5793965 COXBURSA331_A1004 Coxiella burnetii RSA 331 AsmA family protein YP_001596769.1 890429 R 360115 CDS YP_001596770.1 161829980 5793995 complement(892837..894234) 1 NC_010117.1 hypothetical protein 894234 5793995 COXBURSA331_A1007 Coxiella burnetii RSA 331 hypothetical protein YP_001596770.1 892837 R 360115 CDS YP_001596771.1 161829740 5794272 894600..895169 1 NC_010117.1 hypothetical protein 895169 5794272 COXBURSA331_A1008 Coxiella burnetii RSA 331 hypothetical protein YP_001596771.1 894600 D 360115 CDS YP_001596772.1 161831384 5794020 895364..895750 1 NC_010117.1 identified by match to protein family HMM PF00076; glycine-rich RNA binding protein 895750 5794020 COXBURSA331_A1009 Coxiella burnetii RSA 331 glycine-rich RNA binding protein YP_001596772.1 895364 D 360115 CDS YP_001596773.1 161831070 5794285 895756..896670 1 NC_010117.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 896670 5794285 COXBURSA331_A1010 Coxiella burnetii RSA 331 ABC transporter ATP-binding protein YP_001596773.1 895756 D 360115 CDS YP_001596774.1 161829949 5793746 896671..897444 1 NC_010117.1 identified by match to protein family HMM PF01061; ABC transporter permease 897444 5793746 COXBURSA331_A1012 Coxiella burnetii RSA 331 ABC transporter permease YP_001596774.1 896671 D 360115 CDS YP_001596775.1 161830249 5793794 complement(897413..898918) 1 NC_010117.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311; glycerol kinase 898918 glpK 5793794 glpK Coxiella burnetii RSA 331 glycerol kinase YP_001596775.1 897413 R 360115 CDS YP_001596776.1 161831586 5793804 899036..900526 1 NC_010117.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 900526 glpD 5793804 glpD Coxiella burnetii RSA 331 glycerol-3-phosphate dehydrogenase YP_001596776.1 899036 D 360115 CDS YP_001596777.1 161831393 5793844 900513..901190 1 NC_010117.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 901190 mpg 5793844 mpg Coxiella burnetii RSA 331 3-methyladenine DNA glycosylase YP_001596777.1 900513 D 360115 CDS YP_001596778.1 161829995 5793852 901234..902025 1 NC_010117.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase/reductase family oxidoreductase 902025 5793852 COXBURSA331_A1015 Coxiella burnetii RSA 331 short chain dehydrogenase/reductase family oxidoreductase YP_001596778.1 901234 D 360115 CDS YP_001596779.1 161831296 5793849 902047..902637 1 NC_010117.1 identified by match to protein family HMM PF01243; match to protein family HMM TIGR00558; pyridoxamine 5'-phosphate oxidase 902637 pdxH 5793849 pdxH Coxiella burnetii RSA 331 pyridoxamine 5'-phosphate oxidase YP_001596779.1 902047 D 360115 CDS YP_001596780.1 161831014 5793888 904175..905068 1 NC_010117.1 identified by match to protein family HMM PF03446; match to protein family HMM TIGR01692; 3-hydroxyisobutyrate dehydrogenase 905068 mmsB 5793888 mmsB Coxiella burnetii RSA 331 3-hydroxyisobutyrate dehydrogenase YP_001596780.1 904175 D 360115 CDS YP_001596781.1 161831017 5793903 905169..906170 1 NC_010117.1 identified by match to protein family HMM TIGR02283; putative lytic murein transglycosylase 906170 5793903 COXBURSA331_A1019 Coxiella burnetii RSA 331 putative lytic murein transglycosylase YP_001596781.1 905169 D 360115 CDS YP_001596782.1 161830429 5793932 906172..906840 1 NC_010117.1 identified by match to protein family HMM PF01596; O-methyltransferase 906840 mdmC 5793932 mdmC Coxiella burnetii RSA 331 O-methyltransferase YP_001596782.1 906172 D 360115 CDS YP_001596783.1 161831421 5793970 complement(906835..907869) 1 NC_010117.1 identified by match to protein family HMM PF01594; hypothetical protein 907869 5793970 COXBURSA331_A1020 Coxiella burnetii RSA 331 hypothetical protein YP_001596783.1 906835 R 360115 CDS YP_001596784.1 161830765 5793951 908086..909399 1 NC_010117.1 identified by match to protein family HMM PF07690; intraphagosomal amino acid transporter (Pht) family protein 909399 5793951 COXBURSA331_A1022 Coxiella burnetii RSA 331 intraphagosomal amino acid transporter (Pht) family protein YP_001596784.1 908086 D 360115 CDS YP_001596785.1 161830143 5793508 complement(909692..910807) 1 NC_010117.1 identified by match to protein family HMM PF00487; fatty acid desaturase family protein 910807 5793508 COXBURSA331_A1023 Coxiella burnetii RSA 331 fatty acid desaturase family protein YP_001596785.1 909692 R 360115 CDS YP_001596786.1 161830546 5794468 complement(912640..913155) 1 NC_010117.1 identified by match to protein family HMM PF01734; patatin family phospholipase 913155 5794468 COXBURSA331_A1026 Coxiella burnetii RSA 331 patatin family phospholipase YP_001596786.1 912640 R 360115 CDS YP_001596787.1 161830200 5794312 complement(913864..914631) 1 NC_010117.1 identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein 914631 5794312 COXBURSA331_A1028 Coxiella burnetii RSA 331 endonuclease/exonuclease/phosphatase family protein YP_001596787.1 913864 R 360115 CDS YP_001596788.1 161830308 5794313 914834..915334 1 NC_010117.1 hypothetical protein 915334 5794313 COXBURSA331_A1029 Coxiella burnetii RSA 331 hypothetical protein YP_001596788.1 914834 D 360115 CDS YP_001596789.1 161830737 5794314 915336..916451 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 916451 5794314 COXBURSA331_A1030 Coxiella burnetii RSA 331 hypothetical protein YP_001596789.1 915336 D 360115 CDS YP_001596790.1 161831607 5794317 916721..917161 1 NC_010117.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 917161 5794317 COXBURSA331_A1031 Coxiella burnetii RSA 331 thioesterase family protein YP_001596790.1 916721 D 360115 CDS YP_001596791.1 161831121 5794318 917163..918587 1 NC_010117.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 918587 prpD 5794318 prpD Coxiella burnetii RSA 331 2-methylcitrate dehydratase YP_001596791.1 917163 D 360115 CDS YP_001596792.1 161830916 5794328 918700..919005 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 919005 5794328 COXBURSA331_A1034 Coxiella burnetii RSA 331 hypothetical protein YP_001596792.1 918700 D 360115 CDS YP_001596793.1 161829990 5794329 complement(918970..919989) 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 919989 5794329 COXBURSA331_A1033 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001596793.1 918970 R 360115 CDS YP_001596794.1 161830493 5794340 complement(920118..920267) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 920267 5794340 COXBURSA331_A1035 Coxiella burnetii RSA 331 hypothetical protein YP_001596794.1 920118 R 360115 CDS YP_001596795.1 161831079 5794345 920259..920399 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 920399 5794345 COXBURSA331_A1036 Coxiella burnetii RSA 331 hypothetical protein YP_001596795.1 920259 D 360115 CDS YP_001596796.1 161831492 5794351 complement(920402..921376) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 921376 5794351 COXBURSA331_A1037 Coxiella burnetii RSA 331 hypothetical protein YP_001596796.1 920402 R 360115 CDS YP_001596797.1 161829815 5794352 complement(921474..922088) 1 NC_010117.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 922088 5794352 COXBURSA331_A1038 Coxiella burnetii RSA 331 Sua5/YciO/YrdC/YwlC family protein YP_001596797.1 921474 R 360115 CDS YP_001596798.1 161830637 5794356 922141..922686 1 NC_010117.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 922686 ispZ 5794356 ispZ Coxiella burnetii RSA 331 intracellular septation protein A YP_001596798.1 922141 D 360115 CDS YP_001596799.1 161830835 5794360 922689..923267 1 NC_010117.1 identified by match to protein family HMM PF01722; match to protein family HMM PF03795; yciL protein 923267 5794360 COXBURSA331_A1040 Coxiella burnetii RSA 331 yciL protein YP_001596799.1 922689 D 360115 CDS YP_001596800.1 161831314 5794369 complement(923285..924583) 1 NC_010117.1 identified by match to protein family HMM PF07690; major facilitator family transporter 924583 5794369 COXBURSA331_A1041 Coxiella burnetii RSA 331 major facilitator family transporter YP_001596800.1 923285 R 360115 CDS YP_001596801.1 161830870 5794370 924703..924942 1 NC_010117.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 924942 rpmE 5794370 rpmE Coxiella burnetii RSA 331 50S ribosomal protein L31 YP_001596801.1 924703 D 360115 CDS YP_001596802.1 161831190 5794383 complement(924954..925940) 1 NC_010117.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742; tRNA-dihydrouridine synthase A 925940 dusA 5794383 dusA Coxiella burnetii RSA 331 tRNA-dihydrouridine synthase A YP_001596802.1 924954 R 360115 CDS YP_001596803.1 161830557 5794397 complement(926005..928476) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 928476 5794397 COXBURSA331_A1044 Coxiella burnetii RSA 331 hypothetical protein YP_001596803.1 926005 R 360115 CDS YP_001596804.1 161831087 5794452 complement(928536..929411) 1 NC_010117.1 identified by similarity to GB:ABG65421.1; hypothetical protein 929411 5794452 COXBURSA331_A1045 Coxiella burnetii RSA 331 hypothetical protein YP_001596804.1 928536 R 360115 CDS YP_001596805.1 161831498 5794506 complement(929659..929778) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 929778 5794506 COXBURSA331_A1046 Coxiella burnetii RSA 331 hypothetical protein YP_001596805.1 929659 R 360115 CDS YP_001596806.1 161829751 5794358 complement(929975..930139) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 930139 5794358 COXBURSA331_A1047 Coxiella burnetii RSA 331 hypothetical protein YP_001596806.1 929975 R 360115 CDS YP_001596807.1 161830435 5794316 complement(930468..930803) 1 NC_010117.1 hypothetical protein 930803 5794316 COXBURSA331_A1048 Coxiella burnetii RSA 331 hypothetical protein YP_001596807.1 930468 R 360115 CDS YP_001596808.1 161830066 5794367 complement(930820..931152) 1 NC_010117.1 identified by match to protein family HMM PF00086; thyroglobulin type-1 repeat-containing protein 931152 5794367 COXBURSA331_A1049 Coxiella burnetii RSA 331 thyroglobulin type-1 repeat-containing protein YP_001596808.1 930820 R 360115 CDS YP_001596809.1 161829777 5794155 complement(931149..932669) 1 NC_010117.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 932669 purF 5794155 purF Coxiella burnetii RSA 331 amidophosphoribosyltransferase YP_001596809.1 931149 R 360115 CDS YP_001596810.1 161831023 5794157 complement(932678..933232) 1 NC_010117.1 identified by match to protein family HMM PF02674; colicin V production protein 933232 dedE 5794157 dedE Coxiella burnetii RSA 331 colicin V production protein YP_001596810.1 932678 R 360115 CDS YP_001596811.1 161829710 5792822 complement(933300..933911) 1 NC_010117.1 identified by match to protein family HMM PF05036; sporulation and cell division repeat-containing protein 933911 5792822 COXBURSA331_A1052 Coxiella burnetii RSA 331 sporulation and cell division repeat-containing protein YP_001596811.1 933300 R 360115 CDS YP_001596812.1 161831302 5794159 complement(933901..935151) 1 NC_010117.1 identified by match to protein family HMM PF08245; match to protein family HMM TIGR01499; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 935151 folC 5794159 folC Coxiella burnetii RSA 331 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_001596812.1 933901 R 360115 CDS YP_001596813.1 161829786 5794160 complement(935284..936159) 1 NC_010117.1 identified by match to protein family HMM TIGR00515; acetyl-CoA carboxylase, carboxyl transferase subunit beta 936159 accD 5794160 accD Coxiella burnetii RSA 331 acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_001596813.1 935284 R 360115 CDS YP_001596814.1 161830159 5794168 complement(936190..936975) 1 NC_010117.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 936975 truA 5794168 truA Coxiella burnetii RSA 331 tRNA pseudouridine synthase A YP_001596814.1 936190 R 360115 CDS YP_001596815.1 161830645 5794169 complement(936980..937918) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 937918 5794169 COXBURSA331_A1056 Coxiella burnetii RSA 331 hypothetical protein YP_001596815.1 936980 R 360115 CDS YP_001596816.1 161831042 5794170 938016..938717 1 NC_010117.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 938717 5794170 COXBURSA331_A1057 Coxiella burnetii RSA 331 metallo-beta-lactamase family protein YP_001596816.1 938016 D 360115 CDS YP_001596817.1 161831442 5794177 938699..939355 1 NC_010117.1 putative disulfide bond formation protein D 939355 5794177 COXBURSA331_A1058 Coxiella burnetii RSA 331 putative disulfide bond formation protein D YP_001596817.1 938699 D 360115 CDS YP_001596818.1 161829929 5794178 939355..939795 1 NC_010117.1 identified by match to protein family HMM PF02600; disulfide bond formation protein C 939795 bdbC 5794178 bdbC Coxiella burnetii RSA 331 disulfide bond formation protein C YP_001596818.1 939355 D 360115 CDS YP_001596819.1 161830563 5794309 complement(940947..942122) 1 NC_010117.1 identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 942122 coaBC 5794309 coaBC Coxiella burnetii RSA 331 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_001596819.1 940947 R 360115 CDS YP_001596820.1 161830184 5794190 complement(942154..943272) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 943272 5794190 COXBURSA331_A1062 Coxiella burnetii RSA 331 hypothetical protein YP_001596820.1 942154 R 360115 CDS YP_001596821.1 161831211 5794196 complement(943326..945134) 1 NC_010117.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA/BipA 945134 typA 5794196 typA Coxiella burnetii RSA 331 GTP-binding protein TypA/BipA YP_001596821.1 943326 R 360115 CDS YP_001596822.1 161830793 5794197 945403..945537 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 945537 5794197 COXBURSA331_A1064 Coxiella burnetii RSA 331 hypothetical protein YP_001596822.1 945403 D 360115 CDS YP_001596823.1 161830997 5794209 946940..947605 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 947605 5794209 COXBURSA331_A1066 Coxiella burnetii RSA 331 hypothetical protein YP_001596823.1 946940 D 360115 CDS YP_001596824.1 161829705 5794211 947727..947927 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 947927 5794211 COXBURSA331_A1068 Coxiella burnetii RSA 331 hypothetical protein YP_001596824.1 947727 D 360115 CDS YP_001596825.1 161831418 5794214 complement(947848..949233) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 949233 5794214 COXBURSA331_A1067 Coxiella burnetii RSA 331 hypothetical protein YP_001596825.1 947848 R 360115 CDS YP_001596826.1 161831002 5794219 complement(949328..949807) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 949807 5794219 COXBURSA331_A1069 Coxiella burnetii RSA 331 hypothetical protein YP_001596826.1 949328 R 360115 CDS YP_001596827.1 161830674 5794222 complement(949902..950384) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 950384 5794222 COXBURSA331_A1070 Coxiella burnetii RSA 331 hypothetical protein YP_001596827.1 949902 R 360115 CDS YP_001596828.1 161831039 5794227 complement(950513..950629) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 950629 5794227 COXBURSA331_A1071 Coxiella burnetii RSA 331 hypothetical protein YP_001596828.1 950513 R 360115 CDS YP_001596829.1 161829869 5794239 950718..950831 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 950831 5794239 COXBURSA331_A1072 Coxiella burnetii RSA 331 hypothetical protein YP_001596829.1 950718 D 360115 CDS YP_001596830.1 161831354 5794231 950815..951921 1 NC_010117.1 identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; ThiF/MoeZ/MoeB domain/rhodanese-like domain-containing protein 951921 5794231 COXBURSA331_A1073 Coxiella burnetii RSA 331 ThiF/MoeZ/MoeB domain/rhodanese-like domain-containing protein YP_001596830.1 950815 D 360115 CDS YP_001596831.1 161831158 5794240 952064..952189 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 952189 5794240 COXBURSA331_A1075 Coxiella burnetii RSA 331 hypothetical protein YP_001596831.1 952064 D 360115 CDS YP_001596832.1 161830696 5794241 complement(952186..953208) 1 NC_010117.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase 953208 asd 5794241 asd Coxiella burnetii RSA 331 aspartate-semialdehyde dehydrogenase YP_001596832.1 952186 R 360115 CDS YP_001596833.1 161830250 5794252 complement(953221..954279) 1 NC_010117.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 954279 aroC 5794252 aroC Coxiella burnetii RSA 331 chorismate synthase YP_001596833.1 953221 R 360115 CDS YP_001596834.1 161830067 5794253 954278..954391 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 954391 5794253 COXBURSA331_A1077 Coxiella burnetii RSA 331 hypothetical protein YP_001596834.1 954278 D 360115 CDS YP_001596835.1 161831599 5794259 954459..955001 1 NC_010117.1 identified by match to protein family HMM PF01713; Smr domain-containing protein 955001 5794259 COXBURSA331_A1078 Coxiella burnetii RSA 331 Smr domain-containing protein YP_001596835.1 954459 D 360115 CDS YP_001596836.1 161831018 5794264 954991..955638 1 NC_010117.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 955638 udk 5794264 udk Coxiella burnetii RSA 331 uridine kinase YP_001596836.1 954991 D 360115 CDS YP_001596837.1 161830976 5794273 complement(956164..956412) 1 NC_010117.1 identified by match to protein family HMM PF03937; hypothetical protein 956412 5794273 COXBURSA331_A1080 Coxiella burnetii RSA 331 hypothetical protein YP_001596837.1 956164 R 360115 CDS YP_001596838.1 161829951 5794276 complement(956409..957503) 1 NC_010117.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase 957503 alr 5794276 alr Coxiella burnetii RSA 331 alanine racemase YP_001596838.1 956409 R 360115 CDS YP_001596839.1 161831380 5794278 complement(957500..959332) 1 NC_010117.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; replicative DNA helicase 959332 dnaB 5794278 dnaB Coxiella burnetii RSA 331 replicative DNA helicase YP_001596839.1 957500 R 360115 CDS YP_001596840.1 161830855 5794279 complement(959581..960039) 1 NC_010117.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 960039 rplI 5794279 rplI Coxiella burnetii RSA 331 50S ribosomal protein L9 YP_001596840.1 959581 R 360115 CDS YP_001596841.1 161830279 5794281 complement(960057..960956) 1 NC_010117.1 hypothetical protein 960956 5794281 COXBURSA331_A1085 Coxiella burnetii RSA 331 hypothetical protein YP_001596841.1 960057 R 360115 CDS YP_001596842.1 161829761 5794315 complement(960960..961181) 1 NC_010117.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 961181 rpsR 5794315 rpsR Coxiella burnetii RSA 331 30S ribosomal protein S18 YP_001596842.1 960960 R 360115 CDS YP_001596843.1 161830223 5794287 complement(961194..961577) 1 NC_010117.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 961577 rpsF 5794287 rpsF Coxiella burnetii RSA 331 30S ribosomal protein S6 YP_001596843.1 961194 R 360115 CDS YP_001596844.1 161829809 5794288 complement(961687..963294) 1 NC_010117.1 ankyrin repeat-containing protein 963294 5794288 COXBURSA331_A1088 Coxiella burnetii RSA 331 ankyrin repeat-containing protein YP_001596844.1 961687 R 360115 CDS YP_001596845.1 161830096 5792791 complement(963616..963996) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 963996 5792791 COXBURSA331_A1089 Coxiella burnetii RSA 331 hypothetical protein YP_001596845.1 963616 R 360115 CDS YP_001596846.1 161831594 5792693 963995..964135 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 964135 5792693 COXBURSA331_A1090 Coxiella burnetii RSA 331 hypothetical protein YP_001596846.1 963995 D 360115 CDS YP_001596847.1 161831402 5792896 964201..964572 1 NC_010117.1 identified by match to protein family HMM PF04430; hypothetical protein 964572 5792896 COXBURSA331_A1091 Coxiella burnetii RSA 331 hypothetical protein YP_001596847.1 964201 D 360115 CDS YP_001596848.1 161829967 5793699 964579..966207 1 NC_010117.1 identified by match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552; NAD+ synthetase 966207 nadE 5793699 nadE Coxiella burnetii RSA 331 NAD+ synthetase YP_001596848.1 964579 D 360115 CDS YP_001596849.1 161829892 5793778 complement(966204..967181) 1 NC_010117.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 967181 lpxK 5793778 lpxK Coxiella burnetii RSA 331 tetraacyldisaccharide 4'-kinase YP_001596849.1 966204 R 360115 CDS YP_001596850.1 161830517 5793647 complement(967181..968947) 1 NC_010117.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02203; lipid A export permease/ATP-binding protein MsbA 968947 msbA 5793647 msbA Coxiella burnetii RSA 331 lipid A export permease/ATP-binding protein MsbA YP_001596850.1 967181 R 360115 CDS YP_001596851.1 161830603 5793413 971485..971916 1 NC_010117.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 971916 mgsA 5793413 mgsA Coxiella burnetii RSA 331 methylglyoxal synthase YP_001596851.1 971485 D 360115 CDS YP_001596852.1 161829803 5792804 complement(972008..974098) 1 NC_010117.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase 974098 pnp 5792804 pnp Coxiella burnetii RSA 331 polynucleotide phosphorylase/polyadenylase YP_001596852.1 972008 R 360115 CDS YP_001596853.1 161830221 5793125 complement(974109..974378) 1 NC_010117.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 974378 rpsO 5793125 rpsO Coxiella burnetii RSA 331 30S ribosomal protein S15 YP_001596853.1 974109 R 360115 CDS YP_001596854.1 161830083 5793422 complement(974634..975497) 1 NC_010117.1 hypothetical protein 975497 5793422 COXBURSA331_A1100 Coxiella burnetii RSA 331 hypothetical protein YP_001596854.1 974634 R 360115 CDS YP_001596855.1 161831598 5793012 complement(975591..976478) 1 NC_010117.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 976478 galU 5793012 galU Coxiella burnetii RSA 331 UTP-glucose-1-phosphate uridylyltransferase YP_001596855.1 975591 R 360115 CDS YP_001596856.1 161830192 5793009 complement(976475..978118) 1 NC_010117.1 identified by match to protein family HMM PF00342; glucose-6-phosphate isomerase 978118 pgi 5793009 pgi Coxiella burnetii RSA 331 glucose-6-phosphate isomerase YP_001596856.1 976475 R 360115 CDS YP_001596857.1 161829789 5793246 complement(978128..978892) 1 NC_010117.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase/reductase family oxidoreductase 978892 5793246 COXBURSA331_A1103 Coxiella burnetii RSA 331 short chain dehydrogenase/reductase family oxidoreductase YP_001596857.1 978128 R 360115 CDS YP_001596858.1 161830018 5793345 complement(978906..980255) 1 NC_010117.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose 6-dehydrogenase 980255 ugd 5793345 ugd Coxiella burnetii RSA 331 UDP-glucose 6-dehydrogenase YP_001596858.1 978906 R 360115 CDS YP_001596859.1 161830846 5793418 980313..981602 1 NC_010117.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose/GDP-mannose dehydrogenase family protein 981602 5793418 COXBURSA331_A1105 Coxiella burnetii RSA 331 UDP-glucose/GDP-mannose dehydrogenase family protein YP_001596859.1 980313 D 360115 CDS YP_001596860.1 161831548 5794040 981605..982609 1 NC_010117.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; capsular polysaccharide biosynthesis protein 982609 5794040 COXBURSA331_A1106 Coxiella burnetii RSA 331 capsular polysaccharide biosynthesis protein YP_001596860.1 981605 D 360115 CDS YP_001596861.1 161831148 5793173 complement(982614..983771) 1 NC_010117.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 983771 5793173 COXBURSA331_A1107 Coxiella burnetii RSA 331 glycoside hydrolase family protein YP_001596861.1 982614 R 360115 CDS YP_001596862.1 161830208 5794066 complement(983782..984879) 1 NC_010117.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 984879 5794066 COXBURSA331_A1108 Coxiella burnetii RSA 331 UDP-N-acetylglucosamine 2-epimerase YP_001596862.1 983782 R 360115 CDS YP_001596863.1 161829796 5793766 complement(985110..986252) 1 NC_010117.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 986252 5793766 COXBURSA331_A1109 Coxiella burnetii RSA 331 glycoside hydrolase family protein YP_001596863.1 985110 R 360115 CDS YP_001596864.1 161830980 5793391 complement(986249..988162) 1 NC_010117.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthase 988162 asnB1 5793391 asnB1 Coxiella burnetii RSA 331 asparagine synthase YP_001596864.1 986249 R 360115 CDS YP_001596865.1 161831408 5793208 complement(988162..989445) 1 NC_010117.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 989445 5793208 COXBURSA331_A1111 Coxiella burnetii RSA 331 glycoside hydrolase family protein YP_001596865.1 988162 R 360115 CDS YP_001596866.1 161829853 5792961 complement(989590..990690) 1 NC_010117.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 990690 5792961 COXBURSA331_A1112 Coxiella burnetii RSA 331 glycoside hydrolase family protein YP_001596866.1 989590 R 360115 CDS YP_001596867.1 161830235 5793661 complement(990976..992460) 1 NC_010117.1 hypothetical protein 992460 5793661 COXBURSA331_A1113 Coxiella burnetii RSA 331 hypothetical protein YP_001596867.1 990976 R 360115 CDS YP_001596868.1 161831218 5792817 complement(992475..993443) 1 NC_010117.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 993443 5792817 COXBURSA331_A1114 Coxiella burnetii RSA 331 radical SAM domain-containing protein YP_001596868.1 992475 R 360115 CDS YP_001596869.1 161831536 5794073 complement(993555..993824) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 993824 5794073 COXBURSA331_A1115 Coxiella burnetii RSA 331 hypothetical protein YP_001596869.1 993555 R 360115 CDS YP_001596870.1 161830017 5793335 complement(993833..994714) 1 NC_010117.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; putative methyltransferase 994714 5793335 COXBURSA331_A1116 Coxiella burnetii RSA 331 putative methyltransferase YP_001596870.1 993833 R 360115 CDS YP_001596871.1 161830448 5793683 complement(994832..996637) 1 NC_010117.1 identified by match to protein family HMM PF00005; ABC transporter permease 996637 5793683 COXBURSA331_A1117 Coxiella burnetii RSA 331 ABC transporter permease YP_001596871.1 994832 R 360115 CDS YP_001596872.1 161831448 5792794 complement(996648..997199) 1 NC_010117.1 putative acetyltransferase 997199 5792794 COXBURSA331_A1118 Coxiella burnetii RSA 331 putative acetyltransferase YP_001596872.1 996648 R 360115 CDS YP_001596873.1 161829937 5792815 complement(997200..999098) 1 NC_010117.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthetase B 999098 asnB2 5792815 asnB2 Coxiella burnetii RSA 331 asparagine synthetase B YP_001596873.1 997200 R 360115 CDS YP_001596874.1 161830369 5794082 complement(999101..1000249) 1 NC_010117.1 identified by match to protein family HMM PF01041; polysaccharide biosynthesis protein 1000249 5794082 COXBURSA331_A1120 Coxiella burnetii RSA 331 polysaccharide biosynthesis protein YP_001596874.1 999101 R 360115 CDS YP_001596875.1 161830800 5792877 complement(1000252..1001244) 1 NC_010117.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein 1001244 5792877 COXBURSA331_A1121 Coxiella burnetii RSA 331 NAD dependent epimerase/dehydratase family protein YP_001596875.1 1000252 R 360115 CDS YP_001596876.1 161830752 5793203 complement(1001262..1002815) 1 NC_010117.1 identified by match to protein family HMM PF00132; match to protein family HMM PF01408; match to protein family HMM PF02894; hexapeptide repeat-containing transferase 1002815 5793203 COXBURSA331_A1122 Coxiella burnetii RSA 331 hexapeptide repeat-containing transferase YP_001596876.1 1001262 R 360115 CDS YP_001596877.1 161831172 5792870 complement(1002892..1003467) 1 NC_010117.1 hypothetical protein 1003467 5792870 COXBURSA331_A1123 Coxiella burnetii RSA 331 hypothetical protein YP_001596877.1 1002892 R 360115 CDS YP_001596878.1 161830667 5793394 complement(1003523..1004026) 1 NC_010117.1 identified by match to protein family HMM PF02357; match to protein family HMM TIGR01955; transcriptional activator RfaH 1004026 rfaH 5793394 rfaH Coxiella burnetii RSA 331 transcriptional activator RfaH YP_001596878.1 1003523 R 360115 CDS YP_001596879.1 161831092 5793242 complement(1004013..1005122) 1 NC_010117.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212; DegT/DnrJ/EryC1/StrS aminotransferase family protein 1005122 5793242 COXBURSA331_A1125 Coxiella burnetii RSA 331 DegT/DnrJ/EryC1/StrS aminotransferase family protein YP_001596879.1 1004013 R 360115 CDS YP_001596880.1 161830021 5792782 1005226..1006611 1 NC_010117.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1006611 purB 5792782 purB Coxiella burnetii RSA 331 adenylosuccinate lyase YP_001596880.1 1005226 D 360115 CDS YP_001596881.1 161830326 5793019 1006639..1008336 1 NC_010117.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1008336 sfcA 5793019 sfcA Coxiella burnetii RSA 331 malate dehydrogenase YP_001596881.1 1006639 D 360115 CDS YP_001596882.1 161831263 5793218 1008781..1009917 1 NC_010117.1 identified by match to protein family HMM PF02661; Fic family protein 1009917 5793218 COXBURSA331_A1129 Coxiella burnetii RSA 331 Fic family protein YP_001596882.1 1008781 D 360115 CDS YP_001596883.1 161830046 5793348 complement(1009982..1010173) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1010173 5793348 COXBURSA331_A1130 Coxiella burnetii RSA 331 hypothetical protein YP_001596883.1 1009982 R 360115 CDS YP_001596884.1 161830236 5793206 complement(1011386..1012060) 1 NC_010117.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase family protein 1012060 5793206 COXBURSA331_A1132 Coxiella burnetii RSA 331 glutathione S-transferase family protein YP_001596884.1 1011386 R 360115 CDS YP_001596885.1 161829799 5793705 complement(1012117..1012698) 1 NC_010117.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1012698 5793705 COXBURSA331_A1133 Coxiella burnetii RSA 331 TetR family transcriptional regulator YP_001596885.1 1012117 R 360115 CDS YP_001596886.1 161831573 5792795 1013087..1013515 1 NC_010117.1 acetyltransferase 1013515 5792795 COXBURSA331_A1134 Coxiella burnetii RSA 331 acetyltransferase YP_001596886.1 1013087 D 360115 CDS YP_001596887.1 161829978 5793223 1015568..1015702 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1015702 5793223 COXBURSA331_A1137 Coxiella burnetii RSA 331 hypothetical protein YP_001596887.1 1015568 D 360115 CDS YP_001596888.1 161829960 5792928 complement(1015792..1016250) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1016250 5792928 COXBURSA331_A1138 Coxiella burnetii RSA 331 hypothetical protein YP_001596888.1 1015792 R 360115 CDS YP_001596889.1 161830544 5793674 complement(1016538..1017896) 1 NC_010117.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 1017896 5793674 COXBURSA331_A1139 Coxiella burnetii RSA 331 MATE efflux family protein YP_001596889.1 1016538 R 360115 CDS YP_001596890.1 161831057 5792813 complement(1017911..1019488) 1 NC_010117.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1019488 prfC 5792813 prfC Coxiella burnetii RSA 331 peptide chain release factor 3 YP_001596890.1 1017911 R 360115 CDS YP_001596891.1 161831591 5792848 complement(1019489..1020556) 1 NC_010117.1 identified by match to protein family HMM PF03739; putative permease 1020556 5792848 COXBURSA331_A1141 Coxiella burnetii RSA 331 putative permease YP_001596891.1 1019489 R 360115 CDS YP_001596892.1 161829745 5793407 complement(1020544..1021656) 1 NC_010117.1 identified by match to protein family HMM PF03739; putative permease 1021656 5793407 COXBURSA331_A1142 Coxiella burnetii RSA 331 putative permease YP_001596892.1 1020544 R 360115 CDS YP_001596893.1 161830298 5793220 1021799..1024561 1 NC_010117.1 identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00422; valyl-tRNA synthetase 1024561 valS 5793220 valS Coxiella burnetii RSA 331 valyl-tRNA synthetase YP_001596893.1 1021799 D 360115 CDS YP_001596894.1 161829724 5792792 complement(1024593..1025732) 1 NC_010117.1 identified by match to protein family HMM PF00144; putative beta-lactamase 1025732 5792792 COXBURSA331_A1144 Coxiella burnetii RSA 331 putative beta-lactamase YP_001596894.1 1024593 R 360115 CDS YP_001596895.1 161830273 5793267 complement(1026468..1029506) 1 NC_010117.1 identified by match to protein family HMM PF00873; RND efflux transporter 1029506 5793267 COXBURSA331_A1145 Coxiella burnetii RSA 331 RND efflux transporter YP_001596895.1 1026468 R 360115 CDS YP_001596896.1 161830788 5792811 complement(1029514..1030569) 1 NC_010117.1 identified by match to protein family HMM PF00364; match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 1030569 5792811 COXBURSA331_A1146 Coxiella burnetii RSA 331 RND family efflux transporter MFP subunit YP_001596896.1 1029514 R 360115 CDS YP_001596897.1 161831187 5793217 1030762..1031553 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1031553 5793217 COXBURSA331_A1147 Coxiella burnetii RSA 331 hypothetical protein YP_001596897.1 1030762 D 360115 CDS YP_001596898.1 161830175 5793802 complement(1031574..1032011) 1 NC_010117.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 1032011 rimI 5793802 rimI Coxiella burnetii RSA 331 ribosomal-protein-alanine acetyltransferase YP_001596898.1 1031574 R 360115 CDS YP_001596899.1 161830604 5793001 complement(1032008..1032415) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1032415 5793001 COXBURSA331_A1149 Coxiella burnetii RSA 331 hypothetical protein YP_001596899.1 1032008 R 360115 CDS YP_001596900.1 161830253 5792894 1032567..1033562 1 NC_010117.1 identified by match to protein family HMM PF00529; multidrug resistance protein A 1033562 emrA 5792894 emrA Coxiella burnetii RSA 331 multidrug resistance protein A YP_001596900.1 1032567 D 360115 CDS YP_001596901.1 161830738 5793515 1033563..1035143 1 NC_010117.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; DHA2 family drug:H+ antiporter-1 1035143 5793515 COXBURSA331_A1151 Coxiella burnetii RSA 331 DHA2 family drug:H+ antiporter-1 YP_001596901.1 1033563 D 360115 CDS YP_001596902.1 161831433 5793108 1035160..1035501 1 NC_010117.1 identified by match to protein family HMM PF01230; histidine triad domain-containing protein 1035501 5793108 COXBURSA331_A1152 Coxiella burnetii RSA 331 histidine triad domain-containing protein YP_001596902.1 1035160 D 360115 CDS YP_001596903.1 161829857 5793676 1035513..1036067 1 NC_010117.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1036067 folE 5793676 folE Coxiella burnetii RSA 331 GTP cyclohydrolase I YP_001596903.1 1035513 D 360115 CDS YP_001596904.1 161830568 5793935 1036503..1037897 1 NC_010117.1 hypothetical protein 1037897 5793935 COXBURSA331_A1155 Coxiella burnetii RSA 331 hypothetical protein YP_001596904.1 1036503 D 360115 CDS YP_001596905.1 161831099 5793096 1037944..1038558 1 NC_010117.1 hypothetical protein 1038558 5793096 COXBURSA331_A1156 Coxiella burnetii RSA 331 hypothetical protein YP_001596905.1 1037944 D 360115 CDS YP_001596906.1 161831610 5793797 complement(1038662..1040041) 1 NC_010117.1 identified by match to protein family HMM PF07690; major facilitator family transporter 1040041 5793797 COXBURSA331_A1157 Coxiella burnetii RSA 331 major facilitator family transporter YP_001596906.1 1038662 R 360115 CDS YP_001596907.1 161831176 5793368 complement(1040139..1042649) 1 NC_010117.1 hypothetical protein 1042649 5793368 COXBURSA331_A1158 Coxiella burnetii RSA 331 hypothetical protein YP_001596907.1 1040139 R 360115 CDS YP_001596908.1 161831183 5794015 complement(1042734..1043327) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1043327 5794015 COXBURSA331_A1159 Coxiella burnetii RSA 331 hypothetical protein YP_001596908.1 1042734 R 360115 CDS YP_001596909.1 161830777 5793134 complement(1043577..1046003) 1 NC_010117.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229; putative sensor protein gacS 1046003 5793134 COXBURSA331_A1160 Coxiella burnetii RSA 331 putative sensor protein gacS YP_001596909.1 1043577 R 360115 CDS YP_001596910.1 161830621 5793667 complement(1046164..1051002) 1 NC_010117.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM PF08659; polyketide synthase 1051002 5793667 COXBURSA331_A1161 Coxiella burnetii RSA 331 polyketide synthase YP_001596910.1 1046164 R 360115 CDS YP_001596911.1 161829962 5793363 complement(1050992..1052536) 1 NC_010117.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR01733; AMP-binding domain-containing protein 1052536 5793363 COXBURSA331_A1162 Coxiella burnetii RSA 331 AMP-binding domain-containing protein YP_001596911.1 1050992 R 360115 CDS YP_001596912.1 161831480 5792796 complement(1052571..1053704) 1 NC_010117.1 identified by match to protein family HMM PF02515; CAIB/BAIF family protein 1053704 5792796 COXBURSA331_A1163 Coxiella burnetii RSA 331 CAIB/BAIF family protein YP_001596912.1 1052571 R 360115 CDS YP_001596913.1 161831085 5792860 complement(1056652..1056813) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1056813 5792860 COXBURSA331_A1166 Coxiella burnetii RSA 331 hypothetical protein YP_001596913.1 1056652 R 360115 CDS YP_001596914.1 161830207 5793775 complement(1056832..1057512) 1 NC_010117.1 ankyrin repeat-containing protein 1057512 5793775 COXBURSA331_A1167 Coxiella burnetii RSA 331 ankyrin repeat-containing protein YP_001596914.1 1056832 R 360115 CDS YP_001596915.1 161830943 5793776 complement(1057911..1058561) 1 NC_010117.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 1058561 5793776 COXBURSA331_A1168 Coxiella burnetii RSA 331 LuxR family transcriptional regulator YP_001596915.1 1057911 R 360115 CDS YP_001596916.1 161829864 5793653 1058767..1059165 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1059165 5793653 COXBURSA331_A1169 Coxiella burnetii RSA 331 hypothetical protein YP_001596916.1 1058767 D 360115 CDS YP_001596917.1 161830433 5792979 complement(1059736..1060650) 1 NC_010117.1 ABC transporter permease 1060650 5792979 COXBURSA331_A1171 Coxiella burnetii RSA 331 ABC transporter permease YP_001596917.1 1059736 R 360115 CDS YP_001596918.1 161829830 5792829 complement(1060647..1061498) 1 NC_010117.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1061498 5792829 COXBURSA331_A1172 Coxiella burnetii RSA 331 ABC transporter ATP-binding protein YP_001596918.1 1060647 R 360115 CDS YP_001596919.1 161831271 5794007 complement(1061495..1061836) 1 NC_010117.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 1061836 5794007 COXBURSA331_A1173 Coxiella burnetii RSA 331 GntR family transcriptional regulator YP_001596919.1 1061495 R 360115 CDS YP_001596920.1 161830266 5793254 complement(1061843..1062091) 1 NC_010117.1 identified by match to protein family HMM PF04024; PspC domain-containing protein 1062091 5793254 COXBURSA331_A1174 Coxiella burnetii RSA 331 PspC domain-containing protein YP_001596920.1 1061843 R 360115 CDS YP_001596921.1 161829726 5793543 complement(1062220..1062690) 1 NC_010117.1 identified by match to protein family HMM PF00903; glyoxalase family protein 1062690 5793543 COXBURSA331_A1175 Coxiella burnetii RSA 331 glyoxalase family protein YP_001596921.1 1062220 R 360115 CDS YP_001596922.1 161831439 5792941 complement(1062693..1063811) 1 NC_010117.1 identified by match to protein family HMM PF00285; match to protein family HMM TIGR01800; 2-methylcitrate synthase 1063811 prpC 5792941 prpC Coxiella burnetii RSA 331 2-methylcitrate synthase YP_001596922.1 1062693 R 360115 CDS YP_001596923.1 161830036 5793146 complement(1063804..1064676) 1 NC_010117.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 1064676 prpB 5793146 prpB Coxiella burnetii RSA 331 2-methylisocitrate lyase YP_001596923.1 1063804 R 360115 CDS YP_001596924.1 161830252 5794167 complement(1066276..1066962) 1 NC_010117.1 identified by match to protein family HMM PF00117; glutamine amidotransferase 1066962 5794167 COXBURSA331_A1179 Coxiella burnetii RSA 331 glutamine amidotransferase YP_001596924.1 1066276 R 360115 CDS YP_001596925.1 161829932 5794148 1068874..1069032 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1069032 5794148 COXBURSA331_A1183 Coxiella burnetii RSA 331 hypothetical protein YP_001596925.1 1068874 D 360115 CDS YP_001596926.1 161830366 5792977 1069437..1071389 1 NC_010117.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 1071389 5792977 COXBURSA331_A1185 Coxiella burnetii RSA 331 acetoacetyl-CoA synthetase YP_001596926.1 1069437 D 360115 CDS YP_001596927.1 161831466 5794184 complement(1075620..1076210) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1076210 5794184 COXBURSA331_A1188 Coxiella burnetii RSA 331 hypothetical protein YP_001596927.1 1075620 R 360115 CDS YP_001596928.1 161831045 5794187 complement(1076231..1076917) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1076917 5794187 COXBURSA331_A1189 Coxiella burnetii RSA 331 hypothetical protein YP_001596928.1 1076231 R 360115 CDS YP_001596929.1 161829741 5794174 complement(1076997..1077155) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1077155 5794174 COXBURSA331_A1190 Coxiella burnetii RSA 331 hypothetical protein YP_001596929.1 1076997 R 360115 CDS YP_001596930.1 161830174 5794185 1077176..1077550 1 NC_010117.1 identified by match to protein family HMM PF00072; response regulator receiver domain-containing protein 1077550 5794185 COXBURSA331_A1191 Coxiella burnetii RSA 331 response regulator receiver domain-containing protein YP_001596930.1 1077176 D 360115 CDS YP_001596931.1 161830296 5794201 complement(1078785..1079552) 1 NC_010117.1 identified by match to protein family HMM TIGR03302; competence lipoprotein ComL 1079552 comL 5794201 comL Coxiella burnetii RSA 331 competence lipoprotein ComL YP_001596931.1 1078785 R 360115 CDS YP_001596932.1 161830503 5794203 1079675..1080646 1 NC_010117.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 1080646 rluD 5794203 rluD Coxiella burnetii RSA 331 ribosomal large subunit pseudouridine synthase D YP_001596932.1 1079675 D 360115 CDS YP_001596933.1 161829712 5794188 1080618..1081325 1 NC_010117.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 1081325 5794188 COXBURSA331_A1195 Coxiella burnetii RSA 331 hypothetical protein YP_001596933.1 1080618 D 360115 CDS YP_001596934.1 161831404 5794189 1081486..1082841 1 NC_010117.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; protease Do 1082841 5794189 COXBURSA331_A1196 Coxiella burnetii RSA 331 protease Do YP_001596934.1 1081486 D 360115 CDS YP_001596935.1 161831217 5794223 1083935..1087003 1 NC_010117.1 identified by match to protein family HMM PF00873; RND efflux transporter 1087003 5794223 COXBURSA331_A1198 Coxiella burnetii RSA 331 RND efflux transporter YP_001596935.1 1083935 D 360115 CDS YP_001596936.1 161830786 5794218 complement(1087101..1087283) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1087283 5794218 COXBURSA331_A1199 Coxiella burnetii RSA 331 hypothetical protein YP_001596936.1 1087101 R 360115 CDS YP_001596937.1 161831100 5793850 complement(1087314..1088243) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1088243 5793850 COXBURSA331_A1200 Coxiella burnetii RSA 331 hypothetical protein YP_001596937.1 1087314 R 360115 CDS YP_001596938.1 161830675 5793901 complement(1088246..1089550) 1 NC_010117.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1089550 murA 5793901 murA Coxiella burnetii RSA 331 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001596938.1 1088246 R 360115 CDS YP_001596939.1 161830008 5794386 1089701..1090675 1 NC_010117.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; arabinose-5-phosphate isomerase 1090675 kdsD 5794386 kdsD Coxiella burnetii RSA 331 arabinose-5-phosphate isomerase YP_001596939.1 1089701 D 360115 CDS YP_001596940.1 161831299 5794027 1090677..1091174 1 NC_010117.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 1091174 5794027 COXBURSA331_A1203 Coxiella burnetii RSA 331 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_001596940.1 1090677 D 360115 CDS YP_001596941.1 161831228 5792986 1091190..1091777 1 NC_010117.1 identified by match to protein family HMM PF06835; hypothetical protein 1091777 5792986 COXBURSA331_A1204 Coxiella burnetii RSA 331 hypothetical protein YP_001596941.1 1091190 D 360115 CDS YP_001596942.1 161830749 5793028 1091740..1092255 1 NC_010117.1 identified by match to protein family HMM PF03968; match to protein family HMM TIGR03002; cell envelope biogenesis protein YhbN 1092255 yhbN 5793028 yhbN Coxiella burnetii RSA 331 cell envelope biogenesis protein YhbN YP_001596942.1 1091740 D 360115 CDS YP_001596943.1 161830573 5792917 1092258..1093007 1 NC_010117.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1093007 5792917 COXBURSA331_A1206 Coxiella burnetii RSA 331 ABC transporter ATP-binding protein YP_001596943.1 1092258 D 360115 CDS YP_001596944.1 161831004 5793829 1093106..1093396 1 NC_010117.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 1093396 yfiA 5793829 yfiA Coxiella burnetii RSA 331 ribosomal subunit interface protein YP_001596944.1 1093106 D 360115 CDS YP_001596945.1 161830318 5792855 1093396..1093974 1 NC_010117.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 1093974 hprK 5792855 hprK Coxiella burnetii RSA 331 HPr kinase/phosphorylase YP_001596945.1 1093396 D 360115 CDS YP_001596946.1 161830124 5792873 1093955..1094224 1 NC_010117.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr 1094224 ptsH 5792873 ptsH Coxiella burnetii RSA 331 phosphocarrier protein HPr YP_001596946.1 1093955 D 360115 CDS YP_001596947.1 161829812 5794466 complement(1094450..1095772) 1 NC_010117.1 identified by match to protein family HMM PF01523; TldD/PmbA family protein 1095772 5794466 COXBURSA331_A1210 Coxiella burnetii RSA 331 TldD/PmbA family protein YP_001596947.1 1094450 R 360115 CDS YP_001596948.1 161831353 5793902 complement(1095781..1098234) 1 NC_010117.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La 1098234 lon 5793902 lon Coxiella burnetii RSA 331 ATP-dependent protease La YP_001596948.1 1095781 R 360115 CDS YP_001596949.1 161830841 5793083 complement(1098248..1099516) 1 NC_010117.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1099516 clpX 5793083 clpX Coxiella burnetii RSA 331 ATP-dependent protease ATP-binding subunit ClpX YP_001596949.1 1098248 R 360115 CDS YP_001596950.1 161830533 5793036 complement(1099571..1100158) 1 NC_010117.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1100158 clpP 5793036 clpP Coxiella burnetii RSA 331 ATP-dependent Clp protease proteolytic subunit YP_001596950.1 1099571 R 360115 CDS YP_001596951.1 161829878 5793174 complement(1100168..1101481) 1 NC_010117.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1101481 tig 5793174 tig Coxiella burnetii RSA 331 trigger factor YP_001596951.1 1100168 R 360115 CDS YP_001596952.1 161831387 5793620 1101785..1102438 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1102438 5793620 COXBURSA331_A1216 Coxiella burnetii RSA 331 hypothetical protein YP_001596952.1 1101785 D 360115 CDS YP_001596953.1 161830718 5794263 complement(1102459..1103307) 1 NC_010117.1 identified by match to protein family HMM PF01048; phosphorylase family protein 1103307 5794263 COXBURSA331_A1217 Coxiella burnetii RSA 331 phosphorylase family protein YP_001596953.1 1102459 R 360115 CDS YP_001596954.1 161830220 5794260 1103289..1103513 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1103513 5794260 COXBURSA331_A1218 Coxiella burnetii RSA 331 hypothetical protein YP_001596954.1 1103289 D 360115 CDS YP_001596955.1 161831455 5794257 1103573..1104082 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1104082 5794257 COXBURSA331_A2233 Coxiella burnetii RSA 331 hypothetical protein YP_001596955.1 1103573 D 360115 CDS YP_001596956.1 161831567 5794255 1104100..1104498 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1104498 5794255 COXBURSA331_A1219 Coxiella burnetii RSA 331 hypothetical protein YP_001596956.1 1104100 D 360115 CDS YP_001596957.1 161830447 5794251 1104654..1105070 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1105070 5794251 COXBURSA331_A1221 Coxiella burnetii RSA 331 hypothetical protein YP_001596957.1 1104654 D 360115 CDS YP_001596958.1 161830705 5794238 complement(1105067..1105666) 1 NC_010117.1 hypothetical protein 1105666 5794238 COXBURSA331_A1220 Coxiella burnetii RSA 331 hypothetical protein YP_001596958.1 1105067 R 360115 CDS YP_001596959.1 161830138 5794236 complement(1105669..1106595) 1 NC_010117.1 identified by match to protein family HMM PF02470; ABC transporter substrate-binding protein 1106595 5794236 COXBURSA331_A1222 Coxiella burnetii RSA 331 ABC transporter substrate-binding protein YP_001596959.1 1105669 R 360115 CDS YP_001596960.1 161829832 5794235 complement(1106579..1107385) 1 NC_010117.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1107385 5794235 COXBURSA331_A1223 Coxiella burnetii RSA 331 ABC transporter ATP-binding protein YP_001596960.1 1106579 R 360115 CDS YP_001596961.1 161830426 5794233 complement(1107385..1108518) 1 NC_010117.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; ABC transporter permease 1108518 5794233 COXBURSA331_A1224 Coxiella burnetii RSA 331 ABC transporter permease YP_001596961.1 1107385 R 360115 CDS YP_001596962.1 161830640 5794232 1108652..1108774 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1108774 5794232 COXBURSA331_A1225 Coxiella burnetii RSA 331 hypothetical protein YP_001596962.1 1108652 D 360115 CDS YP_001596963.1 161830204 5794135 complement(1111062..1111508) 1 NC_010117.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 1111508 5794135 COXBURSA331_A1228 Coxiella burnetii RSA 331 hypothetical protein YP_001596963.1 1111062 R 360115 CDS YP_001596964.1 161831578 5794110 complement(1111522..1112988) 1 NC_010117.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; putative carbohydrate kinase 1112988 5794110 COXBURSA331_A1229 Coxiella burnetii RSA 331 putative carbohydrate kinase YP_001596964.1 1111522 R 360115 CDS YP_001596965.1 161830198 5794107 1113245..1114264 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1114264 5794107 COXBURSA331_A1231 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001596965.1 1113245 D 360115 CDS YP_001596966.1 161830927 5794104 complement(1114261..1114533) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1114533 5794104 COXBURSA331_A1230 Coxiella burnetii RSA 331 hypothetical protein YP_001596966.1 1114261 R 360115 CDS YP_001596967.1 161830038 5794103 complement(1114672..1116882) 1 NC_010117.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 1116882 rnr 5794103 rnr Coxiella burnetii RSA 331 ribonuclease R YP_001596967.1 1114672 R 360115 CDS YP_001596968.1 161831084 5793985 1116963..1117193 1 NC_010117.1 putative lipoprotein 1117193 5793985 COXBURSA331_A1233 Coxiella burnetii RSA 331 putative lipoprotein YP_001596968.1 1116963 D 360115 CDS YP_001596969.1 161831343 5793236 complement(1117217..1120276) 1 NC_010117.1 identified by match to protein family HMM PF00873; RND efflux transporter 1120276 5793236 COXBURSA331_A1234 Coxiella burnetii RSA 331 RND efflux transporter YP_001596969.1 1117217 R 360115 CDS YP_001596970.1 161830622 5793659 1121666..1122166 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1122166 5793659 COXBURSA331_A1237 Coxiella burnetii RSA 331 hypothetical protein YP_001596970.1 1121666 D 360115 CDS YP_001596971.1 161831584 5794130 1122170..1123549 1 NC_010117.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1123549 fumC 5794130 fumC Coxiella burnetii RSA 331 fumarate hydratase YP_001596971.1 1122170 D 360115 CDS YP_001596972.1 161829749 5794186 complement(1124671..1125495) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1125495 5794186 COXBURSA331_A1241 Coxiella burnetii RSA 331 hypothetical protein YP_001596972.1 1124671 R 360115 CDS YP_001596973.1 161831361 5794115 complement(1125631..1126410) 1 NC_010117.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 1126410 lepB1 5794115 lepB1 Coxiella burnetii RSA 331 signal peptidase I YP_001596973.1 1125631 R 360115 CDS YP_001596974.1 161830909 5794116 complement(1126420..1126833) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1126833 5794116 COXBURSA331_A1243 Coxiella burnetii RSA 331 hypothetical protein YP_001596974.1 1126420 R 360115 CDS YP_001596975.1 161831475 5793986 complement(1126845..1127009) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1127009 5793986 COXBURSA331_A1244 Coxiella burnetii RSA 331 hypothetical protein YP_001596975.1 1126845 R 360115 CDS YP_001596976.1 161830914 5793655 1127384..1127566 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1127566 5793655 COXBURSA331_A1245 Coxiella burnetii RSA 331 hypothetical protein YP_001596976.1 1127384 D 360115 CDS YP_001596977.1 161830257 5793879 complement(1127666..1127794) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1127794 5793879 COXBURSA331_A1246 Coxiella burnetii RSA 331 hypothetical protein YP_001596977.1 1127666 R 360115 CDS YP_001596978.1 161830415 5794365 1130854..1131165 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1131165 5794365 COXBURSA331_A1249 Coxiella burnetii RSA 331 hypothetical protein YP_001596978.1 1130854 D 360115 CDS YP_001596979.1 161831419 5792756 1131534..1132070 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1132070 5792756 COXBURSA331_A1250 Coxiella burnetii RSA 331 hypothetical protein YP_001596979.1 1131534 D 360115 CDS YP_001596980.1 161831484 5793821 complement(1132195..1132944) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1132944 5793821 COXBURSA331_A1251 Coxiella burnetii RSA 331 hypothetical protein YP_001596980.1 1132195 R 360115 CDS YP_001596981.1 161830464 5793975 complement(1133119..1133673) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1133673 5793975 COXBURSA331_A1252 Coxiella burnetii RSA 331 hypothetical protein YP_001596981.1 1133119 R 360115 CDS YP_001596982.1 161831088 5793689 complement(1133730..1135295) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1135295 5793689 COXBURSA331_A1253 Coxiella burnetii RSA 331 hypothetical protein YP_001596982.1 1133730 R 360115 CDS YP_001596983.1 161830985 5793495 complement(1136602..1136889) 1 NC_010117.1 identified by match to protein family HMM PF01541; GIY-YIG catalytic domain-containing protein 1136889 5793495 COXBURSA331_A1255 Coxiella burnetii RSA 331 GIY-YIG catalytic domain-containing protein YP_001596983.1 1136602 R 360115 CDS YP_001596984.1 161830409 5793042 1137128..1137400 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1137400 5793042 COXBURSA331_A1257 Coxiella burnetii RSA 331 hypothetical protein YP_001596984.1 1137128 D 360115 CDS YP_001596985.1 161829837 5793601 complement(1137397..1138416) 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1138416 5793601 COXBURSA331_A1256 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001596985.1 1137397 R 360115 CDS YP_001596986.1 161831307 5793377 1139911..1140156 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1140156 5793377 COXBURSA331_A1260 Coxiella burnetii RSA 331 hypothetical protein YP_001596986.1 1139911 D 360115 CDS YP_001596987.1 161831198 5793095 complement(1140157..1141266) 1 NC_010117.1 identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase 1141266 ald 5793095 ald Coxiella burnetii RSA 331 alanine dehydrogenase YP_001596987.1 1140157 R 360115 CDS YP_001596988.1 161829784 5794385 complement(1141295..1142239) 1 NC_010117.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha 1142239 etfA 5794385 etfA Coxiella burnetii RSA 331 electron transfer flavoprotein subunit alpha YP_001596988.1 1141295 R 360115 CDS YP_001596989.1 161831266 5794368 complement(1142236..1142988) 1 NC_010117.1 identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta 1142988 etfB 5794368 etfB Coxiella burnetii RSA 331 electron transfer flavoprotein subunit beta YP_001596989.1 1142236 R 360115 CDS YP_001596990.1 161830651 5793851 complement(1142985..1143698) 1 NC_010117.1 identified by match to protein family HMM PF01738; dienelactone hydrolase family protein 1143698 5793851 COXBURSA331_A1264 Coxiella burnetii RSA 331 dienelactone hydrolase family protein YP_001596990.1 1142985 R 360115 CDS YP_001596991.1 161830081 5794126 1143829..1145454 1 NC_010117.1 identified by match to protein family HMM PF01266; match to protein family HMM PF05187; electron-transferring-flavoprotein dehydrogenase 1145454 5794126 COXBURSA331_A1266 Coxiella burnetii RSA 331 electron-transferring-flavoprotein dehydrogenase YP_001596991.1 1143829 D 360115 CDS YP_001596992.1 161831496 5793987 1145429..1145548 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1145548 5793987 COXBURSA331_A1267 Coxiella burnetii RSA 331 hypothetical protein YP_001596992.1 1145429 D 360115 CDS YP_001596993.1 161829989 5794124 complement(1145449..1145631) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1145631 5794124 COXBURSA331_A1265 Coxiella burnetii RSA 331 hypothetical protein YP_001596993.1 1145449 R 360115 CDS YP_001596994.1 161830935 5794120 1145662..1146420 1 NC_010117.1 identified by match to protein family HMM PF03734; enhanced entry protein EnhA 1146420 enhA2 5794120 enhA2 Coxiella burnetii RSA 331 enhanced entry protein EnhA YP_001596994.1 1145662 D 360115 CDS YP_001596995.1 161829886 5794117 1146559..1146831 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1146831 5794117 COXBURSA331_A1270 Coxiella burnetii RSA 331 hypothetical protein YP_001596995.1 1146559 D 360115 CDS YP_001596996.1 161830110 5793197 1148004..1148945 1 NC_010117.1 identified by match to protein family HMM PF00226; match to protein family HMM PF01556; curved DNA-binding protein 1148945 cbpA 5793197 cbpA Coxiella burnetii RSA 331 curved DNA-binding protein YP_001596996.1 1148004 D 360115 CDS YP_001596997.1 161831558 5794100 1148948..1149268 1 NC_010117.1 chaperone-modulator protein CbpM 1149268 cbpM 5794100 cbpM Coxiella burnetii RSA 331 chaperone-modulator protein CbpM YP_001596997.1 1148948 D 360115 CDS YP_001596998.1 161831026 5794099 1149272..1150141 1 NC_010117.1 glycosyl hydrolase family protein 1150141 5794099 COXBURSA331_A1273 Coxiella burnetii RSA 331 glycosyl hydrolase family protein YP_001596998.1 1149272 D 360115 CDS YP_001596999.1 161830247 5793153 1150138..1150689 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1150689 5793153 COXBURSA331_A1274 Coxiella burnetii RSA 331 hypothetical protein YP_001596999.1 1150138 D 360115 CDS YP_001597000.1 161830551 5793881 complement(1151379..1151738) 1 NC_010117.1 identified by match to protein family HMM PF01592; NifU-like domain-containing protein 1151738 5793881 COXBURSA331_A1276 Coxiella burnetii RSA 331 NifU-like domain-containing protein YP_001597000.1 1151379 R 360115 CDS YP_001597001.1 161830518 5793684 complement(1151745..1152935) 1 NC_010117.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; cysteine desulfurase 1152935 iscS 5793684 iscS Coxiella burnetii RSA 331 cysteine desulfurase YP_001597001.1 1151745 R 360115 CDS YP_001597002.1 161829974 5794101 complement(1152932..1154941) 1 NC_010117.1 identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733; OPT family oligopeptide transporter 1154941 5794101 COXBURSA331_A1278 Coxiella burnetii RSA 331 OPT family oligopeptide transporter YP_001597002.1 1152932 R 360115 CDS YP_001597003.1 161831388 5794131 complement(1154992..1155714) 1 NC_010117.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050; RNA methyltransferase 1155714 5794131 COXBURSA331_A1279 Coxiella burnetii RSA 331 RNA methyltransferase YP_001597003.1 1154992 R 360115 CDS YP_001597004.1 161830467 5794234 1155907..1156707 1 NC_010117.1 identified by match to protein family HMM PF00459; inositol-1-monophosphatase 1156707 suhB 5794234 suhB Coxiella burnetii RSA 331 inositol-1-monophosphatase YP_001597004.1 1155907 D 360115 CDS YP_001597005.1 161830754 5792955 complement(1156779..1157234) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1157234 5792955 COXBURSA331_A1281 Coxiella burnetii RSA 331 hypothetical protein YP_001597005.1 1156779 R 360115 CDS YP_001597006.1 161830193 5793569 1157380..1157718 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1157718 5793569 COXBURSA331_A1282 Coxiella burnetii RSA 331 hypothetical protein YP_001597006.1 1157380 D 360115 CDS YP_001597007.1 161829994 5793900 complement(1157881..1161015) 1 NC_010117.1 identified by match to protein family HMM PF08238; enhanced entry protein EnhC 1161015 enhC 5793900 enhC Coxiella burnetii RSA 331 enhanced entry protein EnhC YP_001597007.1 1157881 R 360115 CDS YP_001597008.1 161831542 5793891 complement(1161012..1161566) 1 NC_010117.1 enhanced entry protein EnhB 1161566 enhB 5793891 enhB Coxiella burnetii RSA 331 enhanced entry protein EnhB YP_001597008.1 1161012 R 360115 CDS YP_001597009.1 161831440 5793127 complement(1161569..1162306) 1 NC_010117.1 identified by match to protein family HMM PF03734; enhanced entry protein EnhA 1162306 enhA1 5793127 enhA1 Coxiella burnetii RSA 331 enhanced entry protein EnhA YP_001597009.1 1161569 R 360115 CDS YP_001597010.1 161830971 5793631 complement(1162603..1162755) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1162755 5793631 COXBURSA331_A1286 Coxiella burnetii RSA 331 hypothetical protein YP_001597010.1 1162603 R 360115 CDS YP_001597011.1 161829946 5794331 complement(1162827..1162949) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1162949 5794331 COXBURSA331_A1287 Coxiella burnetii RSA 331 hypothetical protein YP_001597011.1 1162827 R 360115 CDS YP_001597012.1 161831234 5792734 1163405..1163866 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1163866 5792734 COXBURSA331_A1288 Coxiella burnetii RSA 331 hypothetical protein YP_001597012.1 1163405 D 360115 CDS YP_001597013.1 161829890 5792901 1164015..1164233 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1164233 5792901 COXBURSA331_A1290 Coxiella burnetii RSA 331 hypothetical protein YP_001597013.1 1164015 D 360115 CDS YP_001597014.1 161830655 5793886 complement(1164230..1165144) 1 NC_010117.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1165144 secF 5793886 secF Coxiella burnetii RSA 331 preprotein translocase subunit SecF YP_001597014.1 1164230 R 360115 CDS YP_001597015.1 161830149 5793834 complement(1165144..1167012) 1 NC_010117.1 identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129; protein-export membrane protein SecD 1167012 secD 5793834 secD Coxiella burnetii RSA 331 protein-export membrane protein SecD YP_001597015.1 1165144 R 360115 CDS YP_001597016.1 161830614 5793833 complement(1167028..1167378) 1 NC_010117.1 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase subunit YajC 1167378 yajC 5793833 yajC Coxiella burnetii RSA 331 preprotein translocase subunit YajC YP_001597016.1 1167028 R 360115 CDS YP_001597017.1 161829849 5792839 complement(1167439..1167879) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1167879 5792839 COXBURSA331_A1293 Coxiella burnetii RSA 331 hypothetical protein YP_001597017.1 1167439 R 360115 CDS YP_001597018.1 161830012 5793769 complement(1167938..1168078) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1168078 5793769 COXBURSA331_A1294 Coxiella burnetii RSA 331 hypothetical protein YP_001597018.1 1167938 R 360115 CDS YP_001597019.1 161830406 5794380 1168077..1169096 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1169096 5794380 COXBURSA331_A1296 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597019.1 1168077 D 360115 CDS YP_001597020.1 161830726 5794378 complement(1169093..1169365) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1169365 5794378 COXBURSA331_A1295 Coxiella burnetii RSA 331 hypothetical protein YP_001597020.1 1169093 R 360115 CDS YP_001597021.1 161830166 5793687 1172827..1173915 1 NC_010117.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1173915 mnmA 5793687 mnmA Coxiella burnetii RSA 331 tRNA-specific 2-thiouridylase MnmA YP_001597021.1 1172827 D 360115 CDS YP_001597022.1 161831377 5793664 1173927..1177400 1 NC_010117.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 1177400 mfd 5793664 mfd Coxiella burnetii RSA 331 transcription-repair coupling factor YP_001597022.1 1173927 D 360115 CDS YP_001597023.1 161829814 5793592 1177544..1178230 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1178230 5793592 COXBURSA331_A1300 Coxiella burnetii RSA 331 hypothetical protein YP_001597023.1 1177544 D 360115 CDS YP_001597024.1 161829874 5794512 complement(1178249..1178902) 1 NC_010117.1 identified by match to protein family HMM PF00702; HAD superfamily hydrolase 1178902 5794512 COXBURSA331_A1301 Coxiella burnetii RSA 331 HAD superfamily hydrolase YP_001597024.1 1178249 R 360115 CDS YP_001597025.2 229597114 5792868 1182907..1184709 1 NC_010117.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate; catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta 1184709 trpBF 5792868 trpBF Coxiella burnetii RSA 331 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta YP_001597025.2 1182907 D 360115 CDS YP_001597026.1 161830783 5793873 1184726..1185529 1 NC_010117.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1185529 trpA 5793873 trpA Coxiella burnetii RSA 331 tryptophan synthase subunit alpha YP_001597026.1 1184726 D 360115 CDS YP_001597027.1 161830363 5794415 complement(1185526..1186227) 1 NC_010117.1 putative lipoprotein 1186227 5794415 COXBURSA331_A1307 Coxiella burnetii RSA 331 putative lipoprotein YP_001597027.1 1185526 R 360115 CDS YP_001597028.1 161830469 5793626 1186352..1187719 1 NC_010117.1 identified by match to protein family HMM PF01222; putative 7-dehydrocholesterol reductase 1187719 5793626 COXBURSA331_A1309 Coxiella burnetii RSA 331 putative 7-dehydrocholesterol reductase YP_001597028.1 1186352 D 360115 CDS YP_001597029.1 161831129 5792740 1188163..1189338 1 NC_010117.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1189338 5792740 COXBURSA331_A1310 Coxiella burnetii RSA 331 hypothetical protein YP_001597029.1 1188163 D 360115 CDS YP_001597030.1 161829920 5792867 complement(1189838..1191169) 1 NC_010117.1 identified by match to protein family HMM PF07690; major facilitator family transporter 1191169 5792867 COXBURSA331_A1311 Coxiella burnetii RSA 331 major facilitator family transporter YP_001597030.1 1189838 R 360115 CDS YP_001597031.1 161831571 5792846 complement(1191715..1192101) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1192101 5792846 COXBURSA331_A1314 Coxiella burnetii RSA 331 hypothetical protein YP_001597031.1 1191715 R 360115 CDS YP_001597032.1 161830179 5793160 complement(1192156..1192317) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1192317 5793160 COXBURSA331_A1315 Coxiella burnetii RSA 331 hypothetical protein YP_001597032.1 1192156 R 360115 CDS YP_001597033.1 161829754 5793209 complement(1192314..1192973) 1 NC_010117.1 hypothetical protein 1192973 5793209 COXBURSA331_A1316 Coxiella burnetii RSA 331 hypothetical protein YP_001597033.1 1192314 R 360115 CDS YP_001597034.1 161831287 5792888 1193332..1194888 1 NC_010117.1 identified by match to protein family HMM PF00069; protein kinase domain-containing protein 1194888 5792888 COXBURSA331_A1319 Coxiella burnetii RSA 331 protein kinase domain-containing protein YP_001597034.1 1193332 D 360115 CDS YP_001597035.1 161829767 5792871 1195028..1195483 1 NC_010117.1 identified by match to protein family HMM PF00011; Hsp20/alpha crystallin family protein 1195483 5792871 COXBURSA331_A1320 Coxiella burnetii RSA 331 Hsp20/alpha crystallin family protein YP_001597035.1 1195028 D 360115 CDS YP_001597036.1 161830309 5794072 1195632..1195838 1 NC_010117.1 identified by match to protein family HMM PF04070; hypothetical protein 1195838 5794072 COXBURSA331_A1321 Coxiella burnetii RSA 331 hypothetical protein YP_001597036.1 1195632 D 360115 CDS YP_001597037.1 161831120 5793033 complement(1195912..1196331) 1 NC_010117.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 1196331 5793033 COXBURSA331_A1322 Coxiella burnetii RSA 331 hypothetical protein YP_001597037.1 1195912 R 360115 CDS YP_001597038.1 161830484 5793046 1198046..1198414 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1198414 5793046 COXBURSA331_A1324 Coxiella burnetii RSA 331 hypothetical protein YP_001597038.1 1198046 D 360115 CDS YP_001597039.1 161830708 5793701 complement(1198914..1199891) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1199891 5793701 COXBURSA331_A1326 Coxiella burnetii RSA 331 hypothetical protein YP_001597039.1 1198914 R 360115 CDS YP_001597040.1 161829785 5793871 1202489..1203622 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1203622 5793871 COXBURSA331_A1328 Coxiella burnetii RSA 331 hypothetical protein YP_001597040.1 1202489 D 360115 CDS YP_001597041.1 161831136 5792890 1203665..1204861 1 NC_010117.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; Bcr/CflA subfamily drug resistance transporter 1204861 5792890 COXBURSA331_A1329 Coxiella burnetii RSA 331 Bcr/CflA subfamily drug resistance transporter YP_001597041.1 1203665 D 360115 CDS YP_001597042.1 161830910 5793297 complement(1205051..1206229) 1 NC_010117.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 1206229 thiI 5793297 thiI Coxiella burnetii RSA 331 thiamine biosynthesis protein ThiI YP_001597042.1 1205051 R 360115 CDS YP_001597043.1 161831315 5793121 complement(1206230..1207372) 1 NC_010117.1 identified by match to protein family HMM PF00266; class V aminotransferase 1207372 5793121 COXBURSA331_A1331 Coxiella burnetii RSA 331 class V aminotransferase YP_001597043.1 1206230 R 360115 CDS YP_001597044.1 161830439 5794045 1207616..1207939 1 NC_010117.1 identified by match to protein family HMM PF00076; RNA-binding protein 1207939 5794045 COXBURSA331_A1332 Coxiella burnetii RSA 331 RNA-binding protein YP_001597044.1 1207616 D 360115 CDS YP_001597045.1 161830893 5793350 complement(1208010..1208738) 1 NC_010117.1 identified by match to protein family HMM PF01553; acyltransferase 1208738 5793350 COXBURSA331_A1333 Coxiella burnetii RSA 331 acyltransferase YP_001597045.1 1208010 R 360115 CDS YP_001597046.1 161831046 5794052 complement(1208841..1210670) 1 NC_010117.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1210670 uvrC 5794052 uvrC Coxiella burnetii RSA 331 excinuclease ABC subunit C YP_001597046.1 1208841 R 360115 CDS YP_001597047.1 161829894 5792972 complement(1210683..1210808) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1210808 5792972 COXBURSA331_A1335 Coxiella burnetii RSA 331 hypothetical protein YP_001597047.1 1210683 R 360115 CDS YP_001597048.1 161830618 5793426 1211257..1212276 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1212276 5793426 COXBURSA331_A1338 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597048.1 1211257 D 360115 CDS YP_001597049.1 161830162 5793034 complement(1212273..1212545) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1212545 5793034 COXBURSA331_A1337 Coxiella burnetii RSA 331 hypothetical protein YP_001597049.1 1212273 R 360115 CDS YP_001597050.1 161830150 5792983 1212953..1213600 1 NC_010117.1 hypothetical protein 1213600 5792983 COXBURSA331_A1340 Coxiella burnetii RSA 331 hypothetical protein YP_001597050.1 1212953 D 360115 CDS YP_001597051.1 161831204 5793270 complement(1213597..1214868) 1 NC_010117.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1214868 serS 5793270 serS Coxiella burnetii RSA 331 seryl-tRNA synthetase YP_001597051.1 1213597 R 360115 CDS YP_001597052.1 161830329 5792836 complement(1214944..1216266) 1 NC_010117.1 identified by match to protein family HMM PF00004; recombination factor protein RarA 1216266 5792836 COXBURSA331_A1341 Coxiella burnetii RSA 331 recombination factor protein RarA YP_001597052.1 1214944 R 360115 CDS YP_001597053.1 161830784 5793102 complement(1216250..1216885) 1 NC_010117.1 identified by match to protein family HMM PF03548; match to protein family HMM TIGR00547; outer membrane lipoprotein carrier protein LolA 1216885 lolA 5793102 lolA Coxiella burnetii RSA 331 outer membrane lipoprotein carrier protein LolA YP_001597053.1 1216250 R 360115 CDS YP_001597054.1 161831415 5792956 complement(1216897..1219233) 1 NC_010117.1 identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein 1219233 5792956 COXBURSA331_A1343 Coxiella burnetii RSA 331 FtsK/SpoIIIE family protein YP_001597054.1 1216897 R 360115 CDS YP_001597055.1 161830388 5792739 1219357..1220319 1 NC_010117.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 1220319 trxB 5792739 trxB Coxiella burnetii RSA 331 thioredoxin-disulfide reductase YP_001597055.1 1219357 D 360115 CDS YP_001597056.1 161831334 5793385 1220345..1221781 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1221781 5793385 COXBURSA331_A1345 Coxiella burnetii RSA 331 hypothetical protein YP_001597056.1 1220345 D 360115 CDS YP_001597057.1 161830848 5794229 1221843..1222094 1 NC_010117.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1222094 infA 5794229 infA Coxiella burnetii RSA 331 translation initiation factor IF-1 YP_001597057.1 1221843 D 360115 CDS YP_001597058.1 161830527 5792971 complement(1222157..1224418) 1 NC_010117.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR02639; ATP-dependent Clp protease ATP-binding subunit ClpA 1224418 clpA 5792971 clpA Coxiella burnetii RSA 331 ATP-dependent Clp protease ATP-binding subunit ClpA YP_001597058.1 1222157 R 360115 CDS YP_001597059.1 161830010 5793099 1224882..1225277 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1225277 5793099 COXBURSA331_A1348 Coxiella burnetii RSA 331 hypothetical protein YP_001597059.1 1224882 D 360115 CDS YP_001597060.1 161831160 5792946 complement(1225446..1226729) 1 NC_010117.1 identified by match to protein family HMM PF00180; match to protein family HMM TIGR00183; isocitrate dehydrogenase 1226729 icd 5792946 icd Coxiella burnetii RSA 331 isocitrate dehydrogenase YP_001597060.1 1225446 R 360115 CDS YP_001597061.1 161830489 5793349 complement(1226776..1227807) 1 NC_010117.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1227807 queA 5793349 queA Coxiella burnetii RSA 331 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_001597061.1 1226776 R 360115 CDS YP_001597062.1 161830050 5793398 1227924..1228775 1 NC_010117.1 hypothetical protein 1228775 5793398 COXBURSA331_A1351 Coxiella burnetii RSA 331 hypothetical protein YP_001597062.1 1227924 D 360115 CDS YP_001597063.1 161829896 5793704 1228839..1230491 1 NC_010117.1 identified by match to protein family HMM PF01645; glutamate synthase domain-containing protein 1230491 5793704 COXBURSA331_A1352 Coxiella burnetii RSA 331 glutamate synthase domain-containing protein YP_001597063.1 1228839 D 360115 CDS YP_001597064.1 161830626 5793670 complement(1231971..1233317) 1 NC_010117.1 identified by match to protein family HMM PF01222; putative delta(24(24(1)))-sterol reductase 1233317 5793670 COXBURSA331_A1354 Coxiella burnetii RSA 331 putative delta(24(24(1)))-sterol reductase YP_001597064.1 1231971 R 360115 CDS YP_001597065.1 161830063 5792945 complement(1233368..1233508) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1233508 5792945 COXBURSA331_A1355 Coxiella burnetii RSA 331 hypothetical protein YP_001597065.1 1233368 R 360115 CDS YP_001597066.1 161829735 5793029 1233747..1234871 1 NC_010117.1 identified by match to protein family HMM PF07690; major facilitator family transporter 1234871 5793029 COXBURSA331_A1356 Coxiella burnetii RSA 331 major facilitator family transporter YP_001597066.1 1233747 D 360115 CDS YP_001597067.1 161830865 5793630 1236969..1238096 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1238096 5793630 COXBURSA331_A1358 Coxiella burnetii RSA 331 hypothetical protein YP_001597067.1 1236969 D 360115 CDS YP_001597068.1 161831340 5793288 1238426..1239445 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1239445 5793288 COXBURSA331_A1361 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597068.1 1238426 D 360115 CDS YP_001597069.1 161830291 5792735 complement(1239442..1239714) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1239714 5792735 COXBURSA331_A1360 Coxiella burnetii RSA 331 hypothetical protein YP_001597069.1 1239442 R 360115 CDS YP_001597070.1 161830699 5793410 complement(1239822..1240940) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1240940 5793410 COXBURSA331_A1362 Coxiella burnetii RSA 331 hypothetical protein YP_001597070.1 1239822 R 360115 CDS YP_001597071.1 161830391 5792754 complement(1240941..1241663) 1 NC_010117.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1241663 purC 5792754 purC Coxiella burnetii RSA 331 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_001597071.1 1240941 R 360115 CDS YP_001597072.1 161829938 5793113 complement(1241663..1242256) 1 NC_010117.1 putative lipoprotein 1242256 5793113 COXBURSA331_A1364 Coxiella burnetii RSA 331 putative lipoprotein YP_001597072.1 1241663 R 360115 CDS YP_001597073.1 161829903 5793109 complement(1242273..1243142) 1 NC_010117.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1243142 dapA 5793109 dapA Coxiella burnetii RSA 331 dihydrodipicolinate synthase YP_001597073.1 1242273 R 360115 CDS YP_001597074.1 161830949 5793406 complement(1243379..1244308) 1 NC_010117.1 identified by match to protein family HMM PF00294; 2-dehydro-3-deoxygluconokinase 1244308 kdgK 5793406 kdgK Coxiella burnetii RSA 331 2-dehydro-3-deoxygluconokinase YP_001597074.1 1243379 R 360115 CDS YP_001597075.1 161830771 5793026 1244348..1245628 1 NC_010117.1 identified by match to protein family HMM PF02646; RmuC family protein 1245628 5793026 COXBURSA331_A1368 Coxiella burnetii RSA 331 RmuC family protein YP_001597075.1 1244348 D 360115 CDS YP_001597076.1 161830313 5792966 complement(1245733..1245930) 1 NC_010117.1 putative lipoprotein 1245930 5792966 COXBURSA331_A1369 Coxiella burnetii RSA 331 putative lipoprotein YP_001597076.1 1245733 R 360115 CDS YP_001597077.1 161830741 5792828 complement(1246041..1246922) 1 NC_010117.1 catalyzes the cleavage of carbon-halogen bonds in aliphatic compounds forming a primary alcohol and a halide; haloalkane dehalogenase 1246922 5792828 COXBURSA331_A1370 Coxiella burnetii RSA 331 haloalkane dehalogenase YP_001597077.1 1246041 R 360115 CDS YP_001597078.1 161830430 5793573 complement(1246946..1251805) 1 NC_010117.1 identified by match to protein family HMM PF05088; putative glutamate dehydrogenase, NAD-specific 1251805 5793573 COXBURSA331_A1371 Coxiella burnetii RSA 331 putative glutamate dehydrogenase, NAD-specific YP_001597078.1 1246946 R 360115 CDS YP_001597079.1 161830121 5793342 1252041..1252712 1 NC_010117.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulatory protein 1252712 5793342 COXBURSA331_A1372 Coxiella burnetii RSA 331 transcriptional regulatory protein YP_001597079.1 1252041 D 360115 CDS YP_001597080.1 161831277 5794081 1252709..1254145 1 NC_010117.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor protein qseC 1254145 qseC 5794081 qseC Coxiella burnetii RSA 331 sensor protein qseC YP_001597080.1 1252709 D 360115 CDS YP_001597081.1 161830979 5793442 1254375..1256963 1 NC_010117.1 hypothetical protein 1256963 5793442 COXBURSA331_A1374 Coxiella burnetii RSA 331 hypothetical protein YP_001597081.1 1254375 D 360115 CDS YP_001597082.1 161830545 5792694 1256960..1260292 1 NC_010117.1 identified by match to protein family HMM PF00580; UvrD/REP helicase family protein 1260292 5792694 COXBURSA331_A1375 Coxiella burnetii RSA 331 UvrD/REP helicase family protein YP_001597082.1 1256960 D 360115 CDS YP_001597083.1 161831452 5793482 complement(1260437..1261135) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1261135 5793482 COXBURSA331_A1376 Coxiella burnetii RSA 331 hypothetical protein YP_001597083.1 1260437 R 360115 CDS YP_001597084.1 161831051 5793343 1261414..1262316 1 NC_010117.1 identified by match to protein family HMM PF06189; 5'-nucleotidase 1262316 5793343 COXBURSA331_A1377 Coxiella burnetii RSA 331 5'-nucleotidase YP_001597084.1 1261414 D 360115 CDS YP_001597085.1 161830398 5793382 1262391..1263665 1 NC_010117.1 hypothetical protein 1263665 5793382 COXBURSA331_A1378 Coxiella burnetii RSA 331 hypothetical protein YP_001597085.1 1262391 D 360115 CDS YP_001597086.1 161829936 5793863 1263824..1264375 1 NC_010117.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 1264375 orn 5793863 orn Coxiella burnetii RSA 331 oligoribonuclease YP_001597086.1 1263824 D 360115 CDS YP_001597087.1 161831233 5793720 complement(1264825..1265211) 1 NC_010117.1 identified by match to protein family HMM PF01850; PilT domain-containing protein 1265211 5793720 COXBURSA331_A1380 Coxiella burnetii RSA 331 PilT domain-containing protein YP_001597087.1 1264825 R 360115 CDS YP_001597088.1 161831530 5793224 complement(1265220..1265474) 1 NC_010117.1 identified by match to protein family HMM PF01402; CopG family protein 1265474 5793224 COXBURSA331_A1381 Coxiella burnetii RSA 331 CopG family protein YP_001597088.1 1265220 R 360115 CDS YP_001597089.1 161831349 5793586 1265619..1266200 1 NC_010117.1 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; hypothetical protein 1266200 5793586 COXBURSA331_A1382 Coxiella burnetii RSA 331 hypothetical protein YP_001597089.1 1265619 D 360115 CDS YP_001597090.1 161830455 5793581 complement(1266276..1267295) 1 NC_010117.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1267295 gcp 5793581 gcp Coxiella burnetii RSA 331 putative DNA-binding/iron metalloprotein/AP endonuclease YP_001597090.1 1266276 R 360115 CDS YP_001597091.1 161830995 5793123 complement(1267304..1268290) 1 NC_010117.1 catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 1268290 mdh 5793123 mdh Coxiella burnetii RSA 331 malate dehydrogenase YP_001597091.1 1267304 R 360115 CDS YP_001597092.1 161831123 5793177 complement(1268485..1269711) 1 NC_010117.1 identified by match to protein family HMM PF03349; OMPP1/FadL/TodX family outer membrane protein 1269711 5793177 COXBURSA331_A1385 Coxiella burnetii RSA 331 OMPP1/FadL/TodX family outer membrane protein YP_001597092.1 1268485 R 360115 CDS YP_001597093.1 161830515 5793656 1269845..1271089 1 NC_010117.1 identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237; exodeoxyribonuclease VII large subunit 1271089 xseA 5793656 xseA Coxiella burnetii RSA 331 exodeoxyribonuclease VII large subunit YP_001597093.1 1269845 D 360115 CDS YP_001597094.1 161829824 5792900 1272715..1273734 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1273734 5792900 COXBURSA331_A1389 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597094.1 1272715 D 360115 CDS YP_001597095.1 161831201 5794141 complement(1273731..1274003) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1274003 5794141 COXBURSA331_A1388 Coxiella burnetii RSA 331 hypothetical protein YP_001597095.1 1273731 R 360115 CDS YP_001597096.1 161830868 5794480 complement(1274124..1275455) 1 NC_010117.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1275455 engA 5794480 engA Coxiella burnetii RSA 331 GTP-binding protein EngA YP_001597096.1 1274124 R 360115 CDS YP_001597097.1 161830059 5793635 1275455..1275661 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1275661 5793635 COXBURSA331_A1391 Coxiella burnetii RSA 331 hypothetical protein YP_001597097.1 1275455 D 360115 CDS YP_001597098.1 161830472 5793710 complement(1275693..1276313) 1 NC_010117.1 hypothetical protein 1276313 5793710 COXBURSA331_A1392 Coxiella burnetii RSA 331 hypothetical protein YP_001597098.1 1275693 R 360115 CDS YP_001597099.1 161831041 5794517 complement(1276336..1277601) 1 NC_010117.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1277601 hisS 5794517 hisS Coxiella burnetii RSA 331 histidyl-tRNA synthetase YP_001597099.1 1276336 R 360115 CDS YP_001597100.1 161831067 5793825 complement(1277598..1278230) 1 NC_010117.1 putative DNA-binding protein 1278230 5793825 COXBURSA331_A1394 Coxiella burnetii RSA 331 putative DNA-binding protein YP_001597100.1 1277598 R 360115 CDS YP_001597101.1 161830687 5793529 complement(1278346..1278477) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1278477 5793529 COXBURSA331_A1395 Coxiella burnetii RSA 331 hypothetical protein YP_001597101.1 1278346 R 360115 CDS YP_001597102.1 161830060 5794195 complement(1279336..1280448) 1 NC_010117.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048; radical SAM protein 1280448 5794195 COXBURSA331_A1397 Coxiella burnetii RSA 331 radical SAM protein YP_001597102.1 1279336 R 360115 CDS YP_001597103.1 161829906 5794194 1280664..1281101 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1281101 5794194 COXBURSA331_A1398 Coxiella burnetii RSA 331 hypothetical protein YP_001597103.1 1280664 D 360115 CDS YP_001597104.1 161831435 5794339 1281333..1282859 1 NC_010117.1 identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 1282859 5794339 COXBURSA331_A1399 Coxiella burnetii RSA 331 ankyrin repeat-containing protein YP_001597104.1 1281333 D 360115 CDS YP_001597105.1 161830715 5794336 complement(1283202..1284005) 1 NC_010117.1 identified by match to protein family HMM PF00348; polyprenyl synthetase family protein 1284005 5794336 COXBURSA331_A1400 Coxiella burnetii RSA 331 polyprenyl synthetase family protein YP_001597105.1 1283202 R 360115 CDS YP_001597106.1 161830306 5794898 1284037..1284153 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1284153 5794898 COXBURSA331_A1401 Coxiella burnetii RSA 331 hypothetical protein YP_001597106.1 1284037 D 360115 CDS YP_001597107.1 161830483 5793752 1284146..1284550 1 NC_010117.1 hypothetical protein 1284550 5793752 COXBURSA331_A1403 Coxiella burnetii RSA 331 hypothetical protein YP_001597107.1 1284146 D 360115 CDS YP_001597108.1 161831020 5794907 complement(1284536..1284970) 1 NC_010117.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1284970 ndk 5794907 ndk Coxiella burnetii RSA 331 nucleoside diphosphate kinase YP_001597108.1 1284536 R 360115 CDS YP_001597109.1 161830161 5793085 1285106..1286704 1 NC_010117.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831; Na+/H+ antiporter 1286704 5793085 COXBURSA331_A1404 Coxiella burnetii RSA 331 Na+/H+ antiporter YP_001597109.1 1285106 D 360115 CDS YP_001597110.1 161831177 5792826 1286836..1287855 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1287855 5792826 COXBURSA331_A1406 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597110.1 1286836 D 360115 CDS YP_001597111.1 161831579 5794321 complement(1287852..1288124) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1288124 5794321 COXBURSA331_A1405 Coxiella burnetii RSA 331 hypothetical protein YP_001597111.1 1287852 R 360115 CDS YP_001597112.1 161830804 5793880 1288517..1289263 1 NC_010117.1 identified by match to protein family HMM PF01389; OmpA-like transmembrane domain-containing protein 1289263 5793880 COXBURSA331_A1407 Coxiella burnetii RSA 331 OmpA-like transmembrane domain-containing protein YP_001597112.1 1288517 D 360115 CDS YP_001597113.1 161830325 5794800 1289361..1290617 1 NC_010117.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943; D-alanyl-D-alanine carboxypeptidase 1290617 5794800 COXBURSA331_A1408 Coxiella burnetii RSA 331 D-alanyl-D-alanine carboxypeptidase YP_001597113.1 1289361 D 360115 CDS YP_001597114.1 161829889 5792927 1290614..1290877 1 NC_010117.1 identified by match to protein family HMM PF04359; hypothetical protein 1290877 5792927 COXBURSA331_A1409 Coxiella burnetii RSA 331 hypothetical protein YP_001597114.1 1290614 D 360115 CDS YP_001597115.1 161831229 5793753 1290901..1291287 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1291287 5793753 COXBURSA331_A1410 Coxiella burnetii RSA 331 hypothetical protein YP_001597115.1 1290901 D 360115 CDS YP_001597116.1 161831305 5793824 1291642..1291896 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1291896 5793824 COXBURSA331_A1412 Coxiella burnetii RSA 331 hypothetical protein YP_001597116.1 1291642 D 360115 CDS YP_001597117.1 161830371 5793934 1291893..1292621 1 NC_010117.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 1292621 lipB 5793934 lipB Coxiella burnetii RSA 331 lipoate-protein ligase B YP_001597117.1 1291893 D 360115 CDS YP_001597118.1 161829883 5794068 1292551..1293498 1 NC_010117.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1293498 lipA 5794068 lipA Coxiella burnetii RSA 331 lipoyl synthase YP_001597118.1 1292551 D 360115 CDS YP_001597119.1 161831458 5792845 1293609..1295657 1 NC_010117.1 identified by match to protein family HMM PF01569; match to protein family HMM PF09335; PAP2 (2 phosphatidic acid phosphatase) family protein 1295657 5792845 COXBURSA331_A1415 Coxiella burnetii RSA 331 PAP2 (2 phosphatidic acid phosphatase) family protein YP_001597119.1 1293609 D 360115 CDS YP_001597120.1 161831027 5792944 complement(1295849..1296910) 1 NC_010117.1 identified by match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 1296910 5792944 COXBURSA331_A1416 Coxiella burnetii RSA 331 pyridine nucleotide-disulfide oxidoreductase YP_001597120.1 1295849 R 360115 CDS YP_001597121.1 161831077 5794387 complement(1296929..1297420) 1 NC_010117.1 identified by match to protein family HMM PF03061; thioesterase family protein 1297420 5794387 COXBURSA331_A1417 Coxiella burnetii RSA 331 thioesterase family protein YP_001597121.1 1296929 R 360115 CDS YP_001597122.1 161830157 5792995 complement(1297479..1297583) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1297583 5792995 COXBURSA331_A1418 Coxiella burnetii RSA 331 hypothetical protein YP_001597122.1 1297479 R 360115 CDS YP_001597123.1 161831454 5794465 1297574..1297846 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1297846 5794465 COXBURSA331_A1420 Coxiella burnetii RSA 331 hypothetical protein YP_001597123.1 1297574 D 360115 CDS YP_001597124.1 161830443 5792763 complement(1297843..1298862) 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1298862 5792763 COXBURSA331_A1419 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597124.1 1297843 R 360115 CDS YP_001597125.1 161831000 5794831 complement(1298954..1299070) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1299070 5794831 COXBURSA331_A1421 Coxiella burnetii RSA 331 hypothetical protein YP_001597125.1 1298954 R 360115 CDS YP_001597126.1 161830828 5793171 1299343..1300605 1 NC_010117.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 1300605 5793171 COXBURSA331_A1422 Coxiella burnetii RSA 331 6-phosphofructokinase YP_001597126.1 1299343 D 360115 CDS YP_001597127.1 161830301 5794108 complement(1300607..1301089) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1301089 5794108 COXBURSA331_A1423 Coxiella burnetii RSA 331 hypothetical protein YP_001597127.1 1300607 R 360115 CDS YP_001597128.1 161831033 5793999 complement(1301083..1302291) 1 NC_010117.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase / muconate lactonizing enzyme 1302291 5793999 COXBURSA331_A1424 Coxiella burnetii RSA 331 mandelate racemase / muconate lactonizing enzyme YP_001597128.1 1301083 R 360115 CDS YP_001597129.1 161830410 5794176 complement(1302322..1303128) 1 NC_010117.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 1303128 5794176 COXBURSA331_A1425 Coxiella burnetii RSA 331 short chain dehydrogenase/reductase family oxidoreductase YP_001597129.1 1302322 R 360115 CDS YP_001597130.1 161829841 5794373 1303272..1303898 1 NC_010117.1 identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182; 2-dehydro-3-deoxyphosphogluconate aldolase 1303898 eda 5794373 eda Coxiella burnetii RSA 331 2-dehydro-3-deoxyphosphogluconate aldolase YP_001597130.1 1303272 D 360115 CDS YP_001597131.1 161831318 5793187 1303909..1304466 1 NC_010117.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; anti-oxidant AhpCTSA family protein 1304466 5793187 COXBURSA331_A1427 Coxiella burnetii RSA 331 anti-oxidant AhpCTSA family protein YP_001597131.1 1303909 D 360115 CDS YP_001597132.1 161831155 5794286 1304454..1305056 1 NC_010117.1 identified by match to protein family HMM PF06055; exopolysaccharide synthesis protein ExoD 1305056 exoD 5794286 exoD Coxiella burnetii RSA 331 exopolysaccharide synthesis protein ExoD YP_001597132.1 1304454 D 360115 CDS YP_001597133.1 161831566 5793041 complement(1305390..1305869) 1 NC_010117.1 identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462; transcription elongation factor GreA 1305869 greA 5793041 greA Coxiella burnetii RSA 331 transcription elongation factor GreA YP_001597133.1 1305390 R 360115 CDS YP_001597134.1 161830009 5793874 complement(1306422..1309643) 1 NC_010117.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02655; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM PF08443; match to protein family HMM TIGR01369; carbamoyl-phosphate synthase large subunit 1309643 carB 5793874 carB Coxiella burnetii RSA 331 carbamoyl-phosphate synthase large subunit YP_001597134.1 1306422 R 360115 CDS YP_001597135.1 161830547 5793568 complement(1309725..1310873) 1 NC_010117.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1310873 carA 5793568 carA Coxiella burnetii RSA 331 carbamoyl phosphate synthase small subunit YP_001597135.1 1309725 R 360115 CDS YP_001597136.1 161830525 5793358 1312707..1314017 1 NC_010117.1 hypothetical protein 1314017 5793358 COXBURSA331_A1433 Coxiella burnetii RSA 331 hypothetical protein YP_001597136.1 1312707 D 360115 CDS YP_001597137.1 161830933 5792952 1314014..1315372 1 NC_010117.1 identified by match to protein family HMM PF07690; MFS family transporter 1315372 5792952 COXBURSA331_A1434 Coxiella burnetii RSA 331 MFS family transporter YP_001597137.1 1314014 D 360115 CDS YP_001597138.1 161831272 5793065 1315443..1316825 1 NC_010117.1 hypothetical protein 1316825 5793065 COXBURSA331_A1435 Coxiella burnetii RSA 331 hypothetical protein YP_001597138.1 1315443 D 360115 CDS YP_001597139.1 161830635 5793492 complement(1316869..1318059) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1318059 5793492 COXBURSA331_A1436 Coxiella burnetii RSA 331 hypothetical protein YP_001597139.1 1316869 R 360115 CDS YP_001597140.1 161830052 5793897 complement(1318148..1318645) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1318645 5793897 COXBURSA331_A1437 Coxiella burnetii RSA 331 hypothetical protein YP_001597140.1 1318148 R 360115 CDS YP_001597141.1 161831238 5793640 complement(1318745..1319869) 1 NC_010117.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1319869 dnaJ 5793640 dnaJ Coxiella burnetii RSA 331 chaperone protein DnaJ YP_001597141.1 1318745 R 360115 CDS YP_001597142.1 161830922 5794290 complement(1320012..1321982) 1 NC_010117.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1321982 dnaK 5794290 dnaK Coxiella burnetii RSA 331 molecular chaperone DnaK YP_001597142.1 1320012 R 360115 CDS YP_001597143.1 161830785 5793848 1322148..1322741 1 NC_010117.1 identified by match to protein family HMM PF00364; putative biotin-requiring enzyme subunit 1322741 5793848 COXBURSA331_A1440 Coxiella burnetii RSA 331 putative biotin-requiring enzyme subunit YP_001597143.1 1322148 D 360115 CDS YP_001597144.1 161831180 5793089 1322744..1324141 1 NC_010117.1 identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 1324141 5793089 COXBURSA331_A1441 Coxiella burnetii RSA 331 ankyrin repeat-containing protein YP_001597144.1 1322744 D 360115 CDS YP_001597145.1 161830132 5792851 complement(1324271..1324885) 1 NC_010117.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 1324885 grpE 5792851 grpE Coxiella burnetii RSA 331 heat shock protein GrpE YP_001597145.1 1324271 R 360115 CDS YP_001597146.1 161830589 5793076 complement(1324952..1325329) 1 NC_010117.1 identified by match to protein family HMM PF01850; PilT domain-containing protein 1325329 5793076 COXBURSA331_A1443 Coxiella burnetii RSA 331 PilT domain-containing protein YP_001597146.1 1324952 R 360115 CDS YP_001597147.1 161830397 5792882 complement(1325319..1325597) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1325597 5792882 COXBURSA331_A1444 Coxiella burnetii RSA 331 hypothetical protein YP_001597147.1 1325319 R 360115 CDS YP_001597148.1 161830864 5794806 1325658..1326557 1 NC_010117.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1326557 ppnK 5794806 ppnK Coxiella burnetii RSA 331 inorganic polyphosphate/ATP-NAD kinase YP_001597148.1 1325658 D 360115 CDS YP_001597149.1 161830993 5793304 1326562..1328232 1 NC_010117.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein RecN 1328232 recN 5793304 recN Coxiella burnetii RSA 331 DNA repair protein RecN YP_001597149.1 1326562 D 360115 CDS YP_001597150.1 161830588 5794389 complement(1329061..1330218) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1330218 5794389 COXBURSA331_A1449 Coxiella burnetii RSA 331 hypothetical protein YP_001597150.1 1329061 R 360115 CDS YP_001597151.1 161830144 5793163 complement(1330364..1330669) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1330669 5793163 COXBURSA331_A1450 Coxiella burnetii RSA 331 hypothetical protein YP_001597151.1 1330364 R 360115 CDS YP_001597152.1 161830923 5793576 complement(1330722..1331189) 1 NC_010117.1 identified by match to protein family HMM PF01475; ferric uptake regulation protein 1331189 fur 5793576 fur Coxiella burnetii RSA 331 ferric uptake regulation protein YP_001597152.1 1330722 R 360115 CDS YP_001597153.1 161830227 5794482 complement(1331641..1331946) 1 NC_010117.1 identified by match to protein family HMM PF03658; hypothetical protein 1331946 5794482 COXBURSA331_A1452 Coxiella burnetii RSA 331 hypothetical protein YP_001597153.1 1331641 R 360115 CDS YP_001597154.1 161831364 5794069 complement(1331943..1332383) 1 NC_010117.1 identified by match to protein family HMM PF03364; polyketide cyclase/dehydrase family protein 1332383 5794069 COXBURSA331_A1454 Coxiella burnetii RSA 331 polyketide cyclase/dehydrase family protein YP_001597154.1 1331943 R 360115 CDS YP_001597155.1 161830789 5794401 1332410..1332889 1 NC_010117.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1332889 smpB 5794401 smpB Coxiella burnetii RSA 331 SsrA-binding protein YP_001597155.1 1332410 D 360115 CDS YP_001597156.1 161831105 5792884 1332882..1333736 1 NC_010117.1 this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein 1333736 msrA 5792884 msrA Coxiella burnetii RSA 331 bifunctional methionine sulfoxide reductase B/A protein YP_001597156.1 1332882 D 360115 CDS YP_001597157.1 161830491 5793300 complement(1333737..1334153) 1 NC_010117.1 hypothetical protein 1334153 5793300 COXBURSA331_A1457 Coxiella burnetii RSA 331 hypothetical protein YP_001597157.1 1333737 R 360115 CDS YP_001597158.1 161831428 5793061 1334612..1335181 1 NC_010117.1 identified by match to protein family HMM PF01966; hypothetical protein 1335181 5793061 COXBURSA331_A1458 Coxiella burnetii RSA 331 hypothetical protein YP_001597158.1 1334612 D 360115 CDS YP_001597159.1 161830341 5794017 complement(1336825..1336989) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1336989 5794017 COXBURSA331_A1461 Coxiella burnetii RSA 331 hypothetical protein YP_001597159.1 1336825 R 360115 CDS YP_001597160.1 161829918 5792799 complement(1336956..1339397) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1339397 5792799 COXBURSA331_A1462 Coxiella burnetii RSA 331 hypothetical protein YP_001597160.1 1336956 R 360115 CDS YP_001597161.1 161830875 5794248 1339559..1339672 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1339672 5794248 COXBURSA331_A1463 Coxiella burnetii RSA 331 hypothetical protein YP_001597161.1 1339559 D 360115 CDS YP_001597162.1 161830209 5793506 complement(1339803..1339928) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1339928 5793506 COXBURSA331_A1464 Coxiella burnetii RSA 331 hypothetical protein YP_001597162.1 1339803 R 360115 CDS YP_001597163.1 161829779 5793122 complement(1340137..1340757) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1340757 5793122 COXBURSA331_A1465 Coxiella burnetii RSA 331 hypothetical protein YP_001597163.1 1340137 R 360115 CDS YP_001597164.1 161831290 5793336 complement(1341098..1341241) 1 NC_010117.1 acetate-CoA ligase, truncation 1341241 5793336 COXBURSA331_A1466 Coxiella burnetii RSA 331 acetate-CoA ligase, truncation YP_001597164.1 1341098 R 360115 CDS YP_001597165.1 161830044 5794349 complement(1341474..1341650) 1 NC_010117.1 hypothetical protein 1341650 5794349 COXBURSA331_A1467 Coxiella burnetii RSA 331 hypothetical protein YP_001597165.1 1341474 R 360115 CDS YP_001597166.1 161830476 5794265 complement(1341856..1341984) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1341984 5794265 COXBURSA331_A1468 Coxiella burnetii RSA 331 hypothetical protein YP_001597166.1 1341856 R 360115 CDS YP_001597167.1 161830907 5793401 complement(1342344..1342967) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1342967 5793401 COXBURSA331_A1469 Coxiella burnetii RSA 331 hypothetical protein YP_001597167.1 1342344 R 360115 CDS YP_001597168.1 161831445 5793126 complement(1343159..1343539) 1 NC_010117.1 identified by match to protein family HMM PF00376; transcriptional regulator domain-containing protein 1343539 5793126 COXBURSA331_A1471 Coxiella burnetii RSA 331 transcriptional regulator domain-containing protein YP_001597168.1 1343159 R 360115 CDS YP_001597169.1 161831262 5793221 complement(1343508..1343819) 1 NC_010117.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1343819 ihfA 5793221 ihfA Coxiella burnetii RSA 331 integration host factor subunit alpha YP_001597169.1 1343508 R 360115 CDS YP_001597170.1 161831139 5793378 complement(1343824..1346202) 1 NC_010117.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1346202 pheT 5793378 pheT Coxiella burnetii RSA 331 phenylalanyl-tRNA synthetase subunit beta YP_001597170.1 1343824 R 360115 CDS YP_001597171.1 161830450 5794080 complement(1346202..1347188) 1 NC_010117.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1347188 pheS 5794080 pheS Coxiella burnetii RSA 331 phenylalanyl-tRNA synthetase subunit alpha YP_001597171.1 1346202 R 360115 CDS YP_001597172.1 161830026 5792710 complement(1347265..1347624) 1 NC_010117.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1347624 rplT 5792710 rplT Coxiella burnetii RSA 331 50S ribosomal protein L20 YP_001597172.1 1347265 R 360115 CDS YP_001597173.1 161831357 5793192 complement(1348264..1348458) 1 NC_010117.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 1348458 rpmI 5793192 rpmI Coxiella burnetii RSA 331 50S ribosomal protein L35 YP_001597173.1 1348264 R 360115 CDS YP_001597174.1 161830327 5793400 complement(1348439..1348948) 1 NC_010117.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1348948 infC 5793400 infC Coxiella burnetii RSA 331 translation initiation factor IF-3 YP_001597174.1 1348439 R 360115 CDS YP_001597175.1 161831126 5793279 complement(1349032..1351014) 1 NC_010117.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1351014 thrS 5793279 thrS Coxiella burnetii RSA 331 threonyl-tRNA synthetase YP_001597175.1 1349032 R 360115 CDS YP_001597176.1 161830973 5794849 complement(1351385..1352455) 1 NC_010117.1 identified by match to protein family HMM PF04055; hypothetical protein 1352455 5794849 COXBURSA331_A1480 Coxiella burnetii RSA 331 hypothetical protein YP_001597176.1 1351385 R 360115 CDS YP_001597177.1 161830064 5794284 complement(1353737..1353868) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1353868 5794284 COXBURSA331_A1482 Coxiella burnetii RSA 331 hypothetical protein YP_001597177.1 1353737 R 360115 CDS YP_001597178.1 161831210 5793882 1354023..1354400 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1354400 5793882 COXBURSA331_A1483 Coxiella burnetii RSA 331 hypothetical protein YP_001597178.1 1354023 D 360115 CDS YP_001597179.1 161830359 5794221 1354554..1355345 1 NC_010117.1 identified by match to protein family HMM PF01925; hypothetical protein 1355345 5794221 COXBURSA331_A1485 Coxiella burnetii RSA 331 hypothetical protein YP_001597179.1 1354554 D 360115 CDS YP_001597180.1 161830679 5793663 complement(1355300..1356433) 1 NC_010117.1 hypothetical protein 1356433 5793663 COXBURSA331_A1484 Coxiella burnetii RSA 331 hypothetical protein YP_001597180.1 1355300 R 360115 CDS YP_001597181.1 161830834 5793644 complement(1356481..1356636) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1356636 5793644 COXBURSA331_A1486 Coxiella burnetii RSA 331 hypothetical protein YP_001597181.1 1356481 R 360115 CDS YP_001597182.1 161830648 5793911 complement(1359100..1362531) 1 NC_010117.1 identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594; DNA polymerase III subunit alpha 1362531 dnaE 5793911 dnaE Coxiella burnetii RSA 331 DNA polymerase III subunit alpha YP_001597182.1 1359100 R 360115 CDS YP_001597183.1 161830077 5793494 complement(1362533..1363651) 1 NC_010117.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 1363651 ddl 5793494 ddl Coxiella burnetii RSA 331 D-alanyl-alanine synthetase A YP_001597183.1 1362533 R 360115 CDS YP_001597184.1 161831501 5793415 1363676..1363798 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1363798 5793415 COXBURSA331_A1491 Coxiella burnetii RSA 331 hypothetical protein YP_001597184.1 1363676 D 360115 CDS YP_001597185.1 161830417 5793893 complement(1363801..1364409) 1 NC_010117.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1364409 rnhB 5793893 rnhB Coxiella burnetii RSA 331 ribonuclease HII YP_001597185.1 1363801 R 360115 CDS YP_001597186.1 161831532 5792787 complement(1364705..1366279) 1 NC_010117.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1366279 guaA 5792787 guaA Coxiella burnetii RSA 331 GMP synthase YP_001597186.1 1364705 R 360115 CDS YP_001597187.1 161829973 5792892 complement(1366316..1367785) 1 NC_010117.1 identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase 1367785 guaB 5792892 guaB Coxiella burnetii RSA 331 inosine-5'-monophosphate dehydrogenase YP_001597187.1 1366316 R 360115 CDS YP_001597188.1 161831489 5794291 complement(1367879..1368256) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1368256 5794291 COXBURSA331_A1496 Coxiella burnetii RSA 331 hypothetical protein YP_001597188.1 1367879 R 360115 CDS YP_001597189.1 161830601 5794216 complement(1372278..1373702) 1 NC_010117.1 identified by match to protein family HMM PF00324; amino acid permease family protein 1373702 5794216 COXBURSA331_A1501 Coxiella burnetii RSA 331 amino acid permease family protein YP_001597189.1 1372278 R 360115 CDS YP_001597190.1 161830142 5794829 1373955..1374122 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1374122 5794829 COXBURSA331_A1502 Coxiella burnetii RSA 331 hypothetical protein YP_001597190.1 1373955 D 360115 CDS YP_001597191.1 161830736 5793434 complement(1376011..1377351) 1 NC_010117.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1377351 glmM 5793434 glmM Coxiella burnetii RSA 331 phosphoglucosamine mutase YP_001597191.1 1376011 R 360115 CDS YP_001597192.1 161830867 5793148 complement(1377440..1378309) 1 NC_010117.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 1378309 folP 5793148 folP Coxiella burnetii RSA 331 dihydropteroate synthase YP_001597192.1 1377440 R 360115 CDS YP_001597193.1 161830126 5793062 1378297..1378416 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1378416 5793062 COXBURSA331_A1507 Coxiella burnetii RSA 331 hypothetical protein YP_001597193.1 1378297 D 360115 CDS YP_001597194.1 161831494 5794876 complement(1378385..1380328) 1 NC_010117.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; ATP-dependent metallopeptidase HflB 1380328 hflB 5794876 hflB Coxiella burnetii RSA 331 ATP-dependent metallopeptidase HflB YP_001597194.1 1378385 R 360115 CDS YP_001597195.1 161830541 5794071 complement(1380348..1380986) 1 NC_010117.1 identified by match to protein family HMM PF01728; ribosomal RNA large subunit methyltransferase J 1380986 rrmJ 5794071 rrmJ Coxiella burnetii RSA 331 ribosomal RNA large subunit methyltransferase J YP_001597195.1 1380348 R 360115 CDS YP_001597196.1 161830642 5793717 complement(1381008..1381550) 1 NC_010117.1 identified by match to protein family HMM PF01883; match to protein family HMM TIGR03406; hypothetical protein 1381550 5793717 COXBURSA331_A1509 Coxiella burnetii RSA 331 hypothetical protein YP_001597196.1 1381008 R 360115 CDS YP_001597197.1 161831019 5794062 complement(1381552..1381905) 1 NC_010117.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR01997; FeS assembly scaffold SufA 1381905 sufA 5794062 sufA Coxiella burnetii RSA 331 FeS assembly scaffold SufA YP_001597197.1 1381552 R 360115 CDS YP_001597198.1 161829775 5794869 complement(1381902..1382348) 1 NC_010117.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994; NifU family SUF system FeS assembly protein 1382348 5794869 COXBURSA331_A1511 Coxiella burnetii RSA 331 NifU family SUF system FeS assembly protein YP_001597198.1 1381902 R 360115 CDS YP_001597199.1 161830212 5794532 complement(1382371..1383588) 1 NC_010117.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979; cysteine desulfurase SufS 1383588 sufS 5794532 sufS Coxiella burnetii RSA 331 cysteine desulfurase SufS YP_001597199.1 1382371 R 360115 CDS YP_001597200.1 161831539 5793750 complement(1383581..1384861) 1 NC_010117.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD 1384861 sufD 5793750 sufD Coxiella burnetii RSA 331 FeS assembly protein SufD YP_001597200.1 1383581 R 360115 CDS YP_001597201.1 161830751 5793147 complement(1384858..1385592) 1 NC_010117.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC 1385592 sufC 5793147 sufC Coxiella burnetii RSA 331 FeS assembly ATPase SufC YP_001597201.1 1384858 R 360115 CDS YP_001597202.1 161830538 5794092 complement(1385616..1387058) 1 NC_010117.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 1387058 sufB 5794092 sufB Coxiella burnetii RSA 331 cysteine desulfurase activator complex subunit SufB YP_001597202.1 1385616 R 360115 CDS YP_001597203.1 161829979 5794794 complement(1387051..1387512) 1 NC_010117.1 identified by match to protein family HMM PF02082; match to protein family HMM PF08279; match to protein family HMM TIGR00738; match to protein family HMM TIGR02944; FeS assembly SUF system regulator 1387512 sufR 5794794 sufR Coxiella burnetii RSA 331 FeS assembly SUF system regulator YP_001597203.1 1387051 R 360115 CDS YP_001597204.1 161831007 5794213 1387721..1388857 1 NC_010117.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation diffusion facilitator family transporter 1388857 5794213 COXBURSA331_A1517 Coxiella burnetii RSA 331 cation diffusion facilitator family transporter YP_001597204.1 1387721 D 360115 CDS YP_001597205.1 161831411 5793645 1388850..1390226 1 NC_010117.1 identified by match to protein family HMM PF00929; exonuclease 1390226 5793645 COXBURSA331_A1518 Coxiella burnetii RSA 331 exonuclease YP_001597205.1 1388850 D 360115 CDS YP_001597206.1 161830668 5792775 complement(1391107..1391220) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1391220 5792775 COXBURSA331_A1519 Coxiella burnetii RSA 331 hypothetical protein YP_001597206.1 1391107 R 360115 CDS YP_001597207.1 161831270 5793566 complement(1391822..1392154) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1392154 5793566 COXBURSA331_A1521 Coxiella burnetii RSA 331 hypothetical protein YP_001597207.1 1391822 R 360115 CDS YP_001597208.1 161831154 5793450 complement(1392336..1394078) 1 NC_010117.1 identified by match to protein family HMM PF07671; hypothetical protein 1394078 5793450 COXBURSA331_A1522 Coxiella burnetii RSA 331 hypothetical protein YP_001597208.1 1392336 R 360115 CDS YP_001597209.1 161831184 5793978 complement(1395245..1395415) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1395415 5793978 COXBURSA331_A1523 Coxiella burnetii RSA 331 hypothetical protein YP_001597209.1 1395245 R 360115 CDS YP_001597210.1 161831351 5794509 1395498..1395632 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1395632 5794509 COXBURSA331_A1525 Coxiella burnetii RSA 331 hypothetical protein YP_001597210.1 1395498 D 360115 CDS YP_001597211.1 161831289 5792992 complement(1395692..1396678) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1396678 5792992 COXBURSA331_A1526 Coxiella burnetii RSA 331 hypothetical protein YP_001597211.1 1395692 R 360115 CDS YP_001597212.1 161830878 5794118 complement(1396871..1397551) 1 NC_010117.1 identified by match to protein family HMM PF00814; M22 peptidase-like protein yeaZ 1397551 yeaZ 5794118 yeaZ Coxiella burnetii RSA 331 M22 peptidase-like protein yeaZ YP_001597212.1 1396871 R 360115 CDS YP_001597213.1 161830285 5794758 1397687..1398706 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1398706 5794758 COXBURSA331_A1529 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597213.1 1397687 D 360115 CDS YP_001597214.1 161830709 5794382 complement(1398703..1398975) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1398975 5794382 COXBURSA331_A1528 Coxiella burnetii RSA 331 hypothetical protein YP_001597214.1 1398703 R 360115 CDS YP_001597215.1 161829899 5794226 complement(1399069..1399650) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1399650 5794226 COXBURSA331_A1530 Coxiella burnetii RSA 331 hypothetical protein YP_001597215.1 1399069 R 360115 CDS YP_001597216.1 161831420 5793225 1399751..1401043 1 NC_010117.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553; para-aminobenzoate synthase, component I 1401043 pabB 5793225 pabB Coxiella burnetii RSA 331 para-aminobenzoate synthase, component I YP_001597216.1 1399751 D 360115 CDS YP_001597217.1 161830445 5793216 1401040..1401519 1 NC_010117.1 identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase family protein 1401519 5793216 COXBURSA331_A1532 Coxiella burnetii RSA 331 cytidine/deoxycytidylate deaminase family protein YP_001597217.1 1401040 D 360115 CDS YP_001597218.1 161831132 5793196 complement(1401552..1403696) 1 NC_010117.1 identified by match to protein family HMM PF01842; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; RelA/SpoT family protein 1403696 5793196 COXBURSA331_A1533 Coxiella burnetii RSA 331 RelA/SpoT family protein YP_001597218.1 1401552 R 360115 CDS YP_001597219.1 161830658 5792951 1403774..1405138 1 NC_010117.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; protease ecfE 1405138 5792951 COXBURSA331_A1534 Coxiella burnetii RSA 331 protease ecfE YP_001597219.1 1403774 D 360115 CDS YP_001597220.1 161830053 5793395 1405107..1405247 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1405247 5793395 COXBURSA331_A1535 Coxiella burnetii RSA 331 hypothetical protein YP_001597220.1 1405107 D 360115 CDS YP_001597221.1 161831580 5793588 complement(1405646..1406401) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1406401 5793588 COXBURSA331_A1536 Coxiella burnetii RSA 331 hypothetical protein YP_001597221.1 1405646 R 360115 CDS YP_001597222.1 161830234 5792824 complement(1406608..1407678) 1 NC_010117.1 identified by match to protein family HMM PF00069; protein kinase domain-containing protein 1407678 5792824 COXBURSA331_A1537 Coxiella burnetii RSA 331 protein kinase domain-containing protein YP_001597222.1 1406608 R 360115 CDS YP_001597223.1 161829781 5793600 1407903..1408622 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1408622 5793600 COXBURSA331_A1538 Coxiella burnetii RSA 331 hypothetical protein YP_001597223.1 1407903 D 360115 CDS YP_001597224.1 161829771 5793241 complement(1408675..1409520) 1 NC_010117.1 identified by match to protein family HMM PF07681; DoxD family protein 1409520 5793241 COXBURSA331_A1539 Coxiella burnetii RSA 331 DoxD family protein YP_001597224.1 1408675 R 360115 CDS YP_001597225.1 161831403 5794183 complement(1409698..1410504) 1 NC_010117.1 identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 1410504 cdsA 5794183 cdsA Coxiella burnetii RSA 331 phosphatidate cytidylyltransferase YP_001597225.1 1409698 R 360115 CDS YP_001597226.1 161830481 5793803 complement(1410506..1411219) 1 NC_010117.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase 1411219 uppS 5793803 uppS Coxiella burnetii RSA 331 undecaprenyl diphosphate synthase YP_001597226.1 1410506 R 360115 CDS YP_001597227.1 161830368 5794343 complement(1411216..1411773) 1 NC_010117.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1411773 frr 5794343 frr Coxiella burnetii RSA 331 ribosome recycling factor YP_001597227.1 1411216 R 360115 CDS YP_001597228.1 161830520 5793381 complement(1411851..1412582) 1 NC_010117.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1412582 pyrH 5793381 pyrH Coxiella burnetii RSA 331 uridylate kinase YP_001597228.1 1411851 R 360115 CDS YP_001597229.1 161830962 5794342 complement(1412582..1413472) 1 NC_010117.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1413472 tsf 5794342 tsf Coxiella burnetii RSA 331 elongation factor Ts YP_001597229.1 1412582 R 360115 CDS YP_001597230.1 161831161 5794735 complement(1413482..1414423) 1 NC_010117.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1414423 rpsB 5794735 rpsB Coxiella burnetii RSA 331 30S ribosomal protein S2 YP_001597230.1 1413482 R 360115 CDS YP_001597231.1 161830125 5794158 1414643..1415293 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1415293 5794158 COXBURSA331_A1546 Coxiella burnetii RSA 331 hypothetical protein YP_001597231.1 1414643 D 360115 CDS YP_001597232.1 161829926 5793116 1415384..1416160 1 NC_010117.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase 1416160 map 5793116 map Coxiella burnetii RSA 331 methionine aminopeptidase YP_001597232.1 1415384 D 360115 CDS YP_001597233.1 161831540 5793162 1419176..1419871 1 NC_010117.1 identified by match to protein family HMM PF04029; 2-phosphosulfolactate phosphatase 1419871 comB 5793162 comB Coxiella burnetii RSA 331 2-phosphosulfolactate phosphatase YP_001597233.1 1419176 D 360115 CDS YP_001597234.1 161830466 5792993 complement(1423703..1424266) 1 NC_010117.1 non-ribosomal peptide synthetase 1424266 5792993 COXBURSA331_A1553 Coxiella burnetii RSA 331 non-ribosomal peptide synthetase YP_001597234.1 1423703 R 360115 CDS YP_001597235.1 161829753 5793991 1424469..1424996 1 NC_010117.1 identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 1424996 5793991 COXBURSA331_A1554 Coxiella burnetii RSA 331 ErfK/YbiS/YcfS/YnhG family protein YP_001597235.1 1424469 D 360115 CDS YP_001597236.1 161831292 5794134 complement(1425015..1425461) 1 NC_010117.1 hypothetical protein 1425461 5794134 COXBURSA331_A1555 Coxiella burnetii RSA 331 hypothetical protein YP_001597236.1 1425015 R 360115 CDS YP_001597237.1 161831593 5792899 complement(1425458..1426342) 1 NC_010117.1 identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinate-CoA ligase (ADP-forming) subunit alpha 1426342 sucD 5792899 sucD Coxiella burnetii RSA 331 succinate-CoA ligase (ADP-forming) subunit alpha YP_001597237.1 1425458 R 360115 CDS YP_001597238.1 161830287 5793244 complement(1426342..1427514) 1 NC_010117.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1427514 sucC 5793244 sucC Coxiella burnetii RSA 331 succinyl-CoA synthetase subunit beta YP_001597238.1 1426342 R 360115 CDS YP_001597239.1 161829996 5793303 complement(1427716..1428924) 1 NC_010117.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 1428924 sucB 5793303 sucB Coxiella burnetii RSA 331 dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex YP_001597239.1 1427716 R 360115 CDS YP_001597240.1 161831389 5793319 complement(1428934..1431738) 1 NC_010117.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1431738 sucA 5793319 sucA Coxiella burnetii RSA 331 2-oxoglutarate dehydrogenase E1 component YP_001597240.1 1428934 R 360115 CDS YP_001597241.1 161830523 5794119 complement(1431762..1432493) 1 NC_010117.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1432493 sdhB 5794119 sdhB Coxiella burnetii RSA 331 succinate dehydrogenase iron-sulfur subunit YP_001597241.1 1431762 R 360115 CDS YP_001597242.1 161830054 5794796 complement(1432500..1434263) 1 NC_010117.1 identified by match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01812; match to protein family HMM TIGR01816; succinate dehydrogenase, flavoprotein subunit 1434263 sdhA 5794796 sdhA Coxiella burnetii RSA 331 succinate dehydrogenase, flavoprotein subunit YP_001597242.1 1432500 R 360115 CDS YP_001597243.1 161829711 5794821 complement(1434276..1434617) 1 NC_010117.1 identified by match to protein family HMM TIGR02968; succinate dehydrogenase, hydrophobic membrane anchor protein 1434617 sdhD 5794821 sdhD Coxiella burnetii RSA 331 succinate dehydrogenase, hydrophobic membrane anchor protein YP_001597243.1 1434276 R 360115 CDS YP_001597244.1 161831114 5793207 complement(1434611..1434988) 1 NC_010117.1 identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970; succinate dehydrogenase, cytochrome b556 subunit 1434988 sdhC 5793207 sdhC Coxiella burnetii RSA 331 succinate dehydrogenase, cytochrome b556 subunit YP_001597244.1 1434611 R 360115 CDS YP_001597245.1 161830289 5794835 1434944..1435093 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1435093 5794835 COXBURSA331_A1564 Coxiella burnetii RSA 331 hypothetical protein YP_001597245.1 1434944 D 360115 CDS YP_001597246.1 161830381 5793603 1437091..1437363 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1437363 5793603 COXBURSA331_A1569 Coxiella burnetii RSA 331 hypothetical protein YP_001597246.1 1437091 D 360115 CDS YP_001597247.1 161831422 5793040 complement(1437360..1438379) 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1438379 5793040 COXBURSA331_A1568 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597247.1 1437360 R 360115 CDS YP_001597248.1 161830839 5794254 1438597..1439889 1 NC_010117.1 identified by match to protein family HMM PF00285; match to protein family HMM TIGR01798; citrate (Si)-synthase 1439889 gltA 5794254 gltA Coxiella burnetii RSA 331 citrate (Si)-synthase YP_001597248.1 1438597 D 360115 CDS YP_001597249.1 161831237 5794132 1439927..1440097 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1440097 5794132 COXBURSA331_A1572 Coxiella burnetii RSA 331 hypothetical protein YP_001597249.1 1439927 D 360115 CDS YP_001597250.1 161830712 5793960 complement(1439985..1440107) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1440107 5793960 COXBURSA331_A1571 Coxiella burnetii RSA 331 hypothetical protein YP_001597250.1 1439985 R 360115 CDS YP_001597251.1 161829717 5794474 complement(1440141..1440962) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1440962 5794474 COXBURSA331_A1573 Coxiella burnetii RSA 331 hypothetical protein YP_001597251.1 1440141 R 360115 CDS YP_001597252.1 161830628 5794867 complement(1440985..1441764) 1 NC_010117.1 hypothetical protein 1441764 5794867 COXBURSA331_A1574 Coxiella burnetii RSA 331 hypothetical protein YP_001597252.1 1440985 R 360115 CDS YP_001597253.1 161831056 5794133 complement(1441808..1442599) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1442599 5794133 COXBURSA331_A1575 Coxiella burnetii RSA 331 hypothetical protein YP_001597253.1 1441808 R 360115 CDS YP_001597254.1 161830680 5793424 complement(1442691..1443653) 1 NC_010117.1 identified by match to protein family HMM PF02769; match to protein family HMM TIGR01379; thiamine-monophosphate kinase 1443653 thiL 5793424 thiL Coxiella burnetii RSA 331 thiamine-monophosphate kinase YP_001597254.1 1442691 R 360115 CDS YP_001597255.1 161831001 5793323 1443844..1444494 1 NC_010117.1 identified by match to protein family HMM PF00717; peptidase S24-like domain-containing protein 1444494 5793323 COXBURSA331_A1577 Coxiella burnetii RSA 331 peptidase S24-like domain-containing protein YP_001597255.1 1443844 D 360115 CDS YP_001597256.1 161829811 5792962 complement(1444617..1445033) 1 NC_010117.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1445033 nusB 5792962 nusB Coxiella burnetii RSA 331 transcription antitermination protein NusB YP_001597256.1 1444617 R 360115 CDS YP_001597257.1 161830065 5794344 complement(1445023..1445496) 1 NC_010117.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 1445496 nrdR 5794344 nrdR Coxiella burnetii RSA 331 transcriptional regulator NrdR YP_001597257.1 1445023 R 360115 CDS YP_001597258.1 161831523 5794868 complement(1445496..1446755) 1 NC_010117.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1446755 glyA 5794868 glyA Coxiella burnetii RSA 331 serine hydroxymethyltransferase YP_001597258.1 1445496 R 360115 CDS YP_001597259.1 161830978 5794283 1447118..1447954 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1447954 5794283 COXBURSA331_A1581 Coxiella burnetii RSA 331 hypothetical protein YP_001597259.1 1447118 D 360115 CDS YP_001597260.1 161829907 5794114 complement(1448046..1449401) 1 NC_010117.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1449401 radA 5794114 radA Coxiella burnetii RSA 331 DNA repair protein RadA YP_001597260.1 1448046 R 360115 CDS YP_001597261.1 161831295 5794381 1449481..1449624 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1449624 5794381 COXBURSA331_A1583 Coxiella burnetii RSA 331 hypothetical protein YP_001597261.1 1449481 D 360115 CDS YP_001597262.1 161830766 5794172 complement(1449774..1450778) 1 NC_010117.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1450778 hemB 5794172 hemB Coxiella burnetii RSA 331 delta-aminolevulinic acid dehydratase YP_001597262.1 1449774 R 360115 CDS YP_001597263.1 161830584 5792716 complement(1450796..1451248) 1 NC_010117.1 identified by match to protein family HMM PF05433; surface antigen 1451248 5792716 COXBURSA331_A1585 Coxiella burnetii RSA 331 surface antigen YP_001597263.1 1450796 R 360115 CDS YP_001597264.1 161830770 5794142 1451233..1451346 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1451346 5794142 COXBURSA331_A1586 Coxiella burnetii RSA 331 hypothetical protein YP_001597264.1 1451233 D 360115 CDS YP_001597265.1 161830336 5794851 1451446..1451562 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1451562 5794851 COXBURSA331_A1587 Coxiella burnetii RSA 331 hypothetical protein YP_001597265.1 1451446 D 360115 CDS YP_001597266.1 161830237 5794191 complement(1456469..1457170) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1457170 5794191 COXBURSA331_A1589 Coxiella burnetii RSA 331 hypothetical protein YP_001597266.1 1456469 R 360115 CDS YP_001597267.1 161831320 5793280 1457374..1458393 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1458393 5793280 COXBURSA331_A1591 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597267.1 1457374 D 360115 CDS YP_001597268.1 161830913 5793567 complement(1458390..1458662) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1458662 5793567 COXBURSA331_A1590 Coxiella burnetii RSA 331 hypothetical protein YP_001597268.1 1458390 R 360115 CDS YP_001597269.1 161830393 5793204 1458638..1458802 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1458802 5793204 COXBURSA331_A1592 Coxiella burnetii RSA 331 hypothetical protein YP_001597269.1 1458638 D 360115 CDS YP_001597270.1 161831133 5793249 1458778..1459323 1 NC_010117.1 hypothetical protein 1459323 5793249 COXBURSA331_A1593 Coxiella burnetii RSA 331 hypothetical protein YP_001597270.1 1458778 D 360115 CDS YP_001597271.1 161829797 5793785 1459674..1460693 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1460693 5793785 COXBURSA331_A1595 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597271.1 1459674 D 360115 CDS YP_001597272.1 161830243 5794798 complement(1460719..1460961) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1460961 5794798 COXBURSA331_A1596 Coxiella burnetii RSA 331 hypothetical protein YP_001597272.1 1460719 R 360115 CDS YP_001597273.1 161830384 5794856 1460968..1461108 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1461108 5794856 COXBURSA331_A1597 Coxiella burnetii RSA 331 hypothetical protein YP_001597273.1 1460968 D 360115 CDS YP_001597274.1 161830815 5793624 complement(1461502..1462431) 1 NC_010117.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1462431 truB 5793624 truB Coxiella burnetii RSA 331 tRNA pseudouridine synthase B YP_001597274.1 1461502 R 360115 CDS YP_001597275.1 161830027 5794200 complement(1462409..1462768) 1 NC_010117.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1462768 rbfA 5794200 rbfA Coxiella burnetii RSA 331 ribosome-binding factor A YP_001597275.1 1462409 R 360115 CDS YP_001597276.1 161830000 5794341 complement(1462856..1465267) 1 NC_010117.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1465267 infB 5794341 infB Coxiella burnetii RSA 331 translation initiation factor IF-2 YP_001597276.1 1462856 R 360115 CDS YP_001597277.1 161830897 5792780 complement(1465273..1466784) 1 NC_010117.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1466784 nusA 5792780 nusA Coxiella burnetii RSA 331 transcription elongation factor NusA YP_001597277.1 1465273 R 360115 CDS YP_001597278.1 161830413 5793830 complement(1466788..1467249) 1 NC_010117.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1467249 5793830 COXBURSA331_A1602 Coxiella burnetii RSA 331 hypothetical protein YP_001597278.1 1466788 R 360115 CDS YP_001597279.1 161831589 5794086 complement(1467627..1469075) 1 NC_010117.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 1469075 nuoN 5794086 nuoN Coxiella burnetii RSA 331 NADH dehydrogenase subunit N YP_001597279.1 1467627 R 360115 CDS YP_001597280.1 161831072 5793354 complement(1469085..1470605) 1 NC_010117.1 identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH dehydrogenase (ubiquinone) subunit M 1470605 nuoM 5793354 nuoM Coxiella burnetii RSA 331 NADH dehydrogenase (ubiquinone) subunit M YP_001597280.1 1469085 R 360115 CDS YP_001597281.1 161830552 5793502 complement(1470610..1472571) 1 NC_010117.1 identified by match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974; NADH dehydrogenase (ubiquinone) subunit L 1472571 nuoL 5793502 nuoL Coxiella burnetii RSA 331 NADH dehydrogenase (ubiquinone) subunit L YP_001597281.1 1470610 R 360115 CDS YP_001597282.1 161829985 5793795 complement(1472628..1472933) 1 NC_010117.1 identified by match to protein family HMM PF00420; NADH dehydrogenase (ubiquinone) subunit K 1472933 nuoK 5793795 nuoK Coxiella burnetii RSA 331 NADH dehydrogenase (ubiquinone) subunit K YP_001597282.1 1472628 R 360115 CDS YP_001597283.1 161831359 5792803 complement(1472930..1473535) 1 NC_010117.1 identified by match to protein family HMM PF00499; NADH dehydrogenase (ubiquinone) subunit J 1473535 nuoJ 5792803 nuoJ Coxiella burnetii RSA 331 NADH dehydrogenase (ubiquinone) subunit J YP_001597283.1 1472930 R 360115 CDS YP_001597284.1 161830697 5793052 complement(1473549..1474040) 1 NC_010117.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1474040 nuoI 5793052 nuoI Coxiella burnetii RSA 331 NADH dehydrogenase subunit I YP_001597284.1 1473549 R 360115 CDS YP_001597285.1 161830998 5794693 complement(1474037..1475059) 1 NC_010117.1 identified by match to protein family HMM PF00146; NADH dehydrogenase (ubiquinone) subunit H 1475059 nuoH 5794693 nuoH Coxiella burnetii RSA 331 NADH dehydrogenase (ubiquinone) subunit H YP_001597285.1 1474037 R 360115 CDS YP_001597286.1 161831516 5792741 complement(1475059..1477422) 1 NC_010117.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G 1477422 nuoG 5792741 nuoG Coxiella burnetii RSA 331 NADH dehydrogenase subunit G YP_001597286.1 1475059 R 360115 CDS YP_001597287.1 161829794 5793043 complement(1477433..1477552) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1477552 5793043 COXBURSA331_A1612 Coxiella burnetii RSA 331 hypothetical protein YP_001597287.1 1477433 R 360115 CDS YP_001597288.1 161830422 5793815 complement(1477533..1478801) 1 NC_010117.1 identified by match to protein family HMM PF01512; match to protein family HMM TIGR01959; NADH dehydrogenase (ubiquinone) subunit F 1478801 nuoF 5793815 nuoF Coxiella burnetii RSA 331 NADH dehydrogenase (ubiquinone) subunit F YP_001597288.1 1477533 R 360115 CDS YP_001597289.1 161831261 5794784 complement(1478791..1479315) 1 NC_010117.1 identified by match to protein family HMM PF01257; match to protein family HMM TIGR01958; NADH dehydrogenase (ubiquinone) subunit E 1479315 nuoE 5794784 nuoE Coxiella burnetii RSA 331 NADH dehydrogenase (ubiquinone) subunit E YP_001597289.1 1478791 R 360115 CDS YP_001597290.1 161831608 5793264 complement(1479315..1480568) 1 NC_010117.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1480568 nuoD 5793264 nuoD Coxiella burnetii RSA 331 NADH dehydrogenase subunit D YP_001597290.1 1479315 R 360115 CDS YP_001597291.1 161829956 5793671 complement(1480561..1481244) 1 NC_010117.1 identified by match to protein family HMM PF00329; match to protein family HMM TIGR01961; NADH dehydrogenase (ubiquinone) subunit C 1481244 nuoC 5793671 nuoC Coxiella burnetii RSA 331 NADH dehydrogenase (ubiquinone) subunit C YP_001597291.1 1480561 R 360115 CDS YP_001597292.1 161830495 5793943 complement(1481254..1481739) 1 NC_010117.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1481739 nuoB 5793943 nuoB Coxiella burnetii RSA 331 NADH dehydrogenase subunit B YP_001597292.1 1481254 R 360115 CDS YP_001597293.1 161830456 5793942 complement(1481744..1482100) 1 NC_010117.1 identified by match to protein family HMM PF00507; NADH dehydrogenase (ubiquinone) subunit A 1482100 nuoA 5793942 nuoA Coxiella burnetii RSA 331 NADH dehydrogenase (ubiquinone) subunit A YP_001597293.1 1481744 R 360115 CDS YP_001597294.1 161831118 5793299 complement(1482397..1482693) 1 NC_010117.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 1482693 secG 5793299 secG Coxiella burnetii RSA 331 preprotein translocase subunit SecG YP_001597294.1 1482397 R 360115 CDS YP_001597295.1 161831533 5792859 complement(1482675..1483442) 1 NC_010117.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1483442 tpiA 5792859 tpiA Coxiella burnetii RSA 331 triosephosphate isomerase YP_001597295.1 1482675 R 360115 CDS YP_001597296.1 161830725 5793805 complement(1483508..1483639) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1483639 5793805 COXBURSA331_A1622 Coxiella burnetii RSA 331 hypothetical protein YP_001597296.1 1483508 R 360115 CDS YP_001597297.1 161830280 5794420 complement(1484295..1485863) 1 NC_010117.1 hypothetical protein 1485863 5794420 COXBURSA331_A1623 Coxiella burnetii RSA 331 hypothetical protein YP_001597297.1 1484295 R 360115 CDS YP_001597298.1 161831601 5793811 complement(1486455..1487762) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1487762 5793811 COXBURSA331_A1624 Coxiella burnetii RSA 331 hypothetical protein YP_001597298.1 1486455 R 360115 CDS YP_001597299.1 161831075 5794434 complement(1487753..1489564) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1489564 5794434 COXBURSA331_A1625 Coxiella burnetii RSA 331 hypothetical protein YP_001597299.1 1487753 R 360115 CDS YP_001597300.1 161831628 5793907 complement(1490622..1490759) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1490759 5793907 COXBURSA331_A1629 Coxiella burnetii RSA 331 hypothetical protein YP_001597300.1 1490622 R 360115 CDS YP_001597301.1 161831143 5794440 1492805..1493953 1 NC_010117.1 hypothetical protein 1493953 5794440 COXBURSA331_A1630 Coxiella burnetii RSA 331 hypothetical protein YP_001597301.1 1492805 D 360115 CDS YP_001597302.1 161830263 5793256 complement(1494076..1494222) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1494222 5793256 COXBURSA331_A1631 Coxiella burnetii RSA 331 hypothetical protein YP_001597302.1 1494076 R 360115 CDS YP_001597303.1 161831487 5794747 complement(1498352..1498513) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1498513 5794747 COXBURSA331_A1637 Coxiella burnetii RSA 331 hypothetical protein YP_001597303.1 1498352 R 360115 CDS YP_001597304.1 161830972 5792957 complement(1498856..1499008) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1499008 5792957 COXBURSA331_A1640 Coxiella burnetii RSA 331 hypothetical protein YP_001597304.1 1498856 R 360115 CDS YP_001597305.1 161830880 5793128 complement(1499056..1499340) 1 NC_010117.1 identified by match to protein family HMM PF00216; DNA-binding protein HU 1499340 hup 5793128 hup Coxiella burnetii RSA 331 DNA-binding protein HU YP_001597305.1 1499056 R 360115 CDS YP_001597306.1 161830317 5794417 1499645..1500103 1 NC_010117.1 identified by match to protein family HMM PF01878; hypothetical protein 1500103 5794417 COXBURSA331_A1642 Coxiella burnetii RSA 331 hypothetical protein YP_001597306.1 1499645 D 360115 CDS YP_001597307.1 161830905 5794412 1500108..1500449 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1500449 5794412 COXBURSA331_A1644 Coxiella burnetii RSA 331 hypothetical protein YP_001597307.1 1500108 D 360115 CDS YP_001597308.1 161830119 5794652 complement(1500426..1501859) 1 NC_010117.1 identified by match to protein family HMM PF01523; TldD protein 1501859 tldD 5794652 tldD Coxiella burnetii RSA 331 TldD protein YP_001597308.1 1500426 R 360115 CDS YP_001597309.1 161830180 5794425 complement(1501930..1505391) 1 NC_010117.1 identified by match to protein family HMM TIGR02099; hypothetical protein 1505391 5794425 COXBURSA331_A1645 Coxiella burnetii RSA 331 hypothetical protein YP_001597309.1 1501930 R 360115 CDS YP_001597310.1 161830598 5794036 complement(1505391..1505879) 1 NC_010117.1 identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426; rod shape-determining protein MreD 1505879 mreD 5794036 mreD Coxiella burnetii RSA 331 rod shape-determining protein MreD YP_001597310.1 1505391 R 360115 CDS YP_001597311.1 161831156 5793781 complement(1505885..1506763) 1 NC_010117.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1506763 mreC 5793781 mreC Coxiella burnetii RSA 331 rod shape-determining protein MreC YP_001597311.1 1505885 R 360115 CDS YP_001597312.1 161830576 5793071 complement(1506846..1507904) 1 NC_010117.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1507904 mreB 5793071 mreB Coxiella burnetii RSA 331 rod shape-determining protein MreB YP_001597312.1 1506846 R 360115 CDS YP_001597313.1 161831273 5793757 1508454..1508753 1 NC_010117.1 identified by match to protein family HMM TIGR00135; glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase subunit C 1508753 gatC 5793757 gatC Coxiella burnetii RSA 331 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase subunit C YP_001597313.1 1508454 D 360115 CDS YP_001597314.1 161830742 5793808 1508757..1510208 1 NC_010117.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1510208 gatA 5793808 gatA Coxiella burnetii RSA 331 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_001597314.1 1508757 D 360115 CDS YP_001597315.1 161830892 5794410 1510213..1511646 1 NC_010117.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1511646 gatB 5794410 gatB Coxiella burnetii RSA 331 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001597315.1 1510213 D 360115 CDS YP_001597316.1 161830019 5793672 1511791..1512063 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1512063 5793672 COXBURSA331_A1653 Coxiella burnetii RSA 331 hypothetical protein YP_001597316.1 1511791 D 360115 CDS YP_001597317.1 161830304 5792967 complement(1512060..1513079) 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1513079 5792967 COXBURSA331_A1652 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597317.1 1512060 R 360115 CDS YP_001597318.1 161830695 5793947 complement(1513164..1514099) 1 NC_010117.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; hydrogen peroxide-inducible genes activator 1514099 oxyR 5793947 oxyR Coxiella burnetii RSA 331 hydrogen peroxide-inducible genes activator YP_001597318.1 1513164 R 360115 CDS YP_001597319.1 161830432 5793070 1514227..1514766 1 NC_010117.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; alkylhydroperoxide reductase AhpC 1514766 ahpC 5793070 ahpC Coxiella burnetii RSA 331 alkylhydroperoxide reductase AhpC YP_001597319.1 1514227 D 360115 CDS YP_001597320.1 161830262 5794542 1514869..1515402 1 NC_010117.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; alkyl hydroperoxide reductase D protein AhpD 1515402 ahpD 5794542 ahpD Coxiella burnetii RSA 331 alkyl hydroperoxide reductase D protein AhpD YP_001597320.1 1514869 D 360115 CDS YP_001597321.1 161829733 5793855 complement(1515431..1515883) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1515883 5793855 COXBURSA331_A1657 Coxiella burnetii RSA 331 hypothetical protein YP_001597321.1 1515431 R 360115 CDS YP_001597322.1 161830556 5794029 complement(1517032..1517778) 1 NC_010117.1 identified by match to protein family HMM PF01145; hypothetical protein 1517778 5794029 COXBURSA331_A1660 Coxiella burnetii RSA 331 hypothetical protein YP_001597322.1 1517032 R 360115 CDS YP_001597323.1 161830099 5793858 complement(1517781..1519157) 1 NC_010117.1 identified by match to protein family HMM PF01957; nfeD family protein 1519157 5793858 COXBURSA331_A1661 Coxiella burnetii RSA 331 nfeD family protein YP_001597323.1 1517781 R 360115 CDS YP_001597324.1 161831406 5793780 1519247..1520533 1 NC_010117.1 identified by match to protein family HMM PF07690; major facilitator family transporter 1520533 5793780 COXBURSA331_A1663 Coxiella burnetii RSA 331 major facilitator family transporter YP_001597324.1 1519247 D 360115 CDS YP_001597325.1 161830051 5793290 1521304..1521471 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1521471 5793290 COXBURSA331_A1665 Coxiella burnetii RSA 331 hypothetical protein YP_001597325.1 1521304 D 360115 CDS YP_001597326.1 161831568 5793534 complement(1521422..1521550) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1521550 5793534 COXBURSA331_A1664 Coxiella burnetii RSA 331 hypothetical protein YP_001597326.1 1521422 R 360115 CDS YP_001597327.1 161830739 5794663 complement(1521525..1522901) 1 NC_010117.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1522901 cysS 5794663 cysS Coxiella burnetii RSA 331 cysteinyl-tRNA synthetase YP_001597327.1 1521525 R 360115 CDS YP_001597328.1 161831153 5794033 complement(1522898..1524295) 1 NC_010117.1 identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464; glutamyl-tRNA synthetase 1524295 gltX1 5794033 gltX1 Coxiella burnetii RSA 331 glutamyl-tRNA synthetase YP_001597328.1 1522898 R 360115 CDS YP_001597329.1 161829848 5793937 1524452..1525183 1 NC_010117.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 1525183 lpxH 5793937 lpxH Coxiella burnetii RSA 331 UDP-2,3-diacylglucosamine hydrolase YP_001597329.1 1524452 D 360115 CDS YP_001597330.1 161830269 5793353 complement(1525252..1525557) 1 NC_010117.1 identified by match to protein family HMM TIGR02607; addiction module antidote protein 1525557 higA 5793353 higA Coxiella burnetii RSA 331 addiction module antidote protein YP_001597330.1 1525252 R 360115 CDS YP_001597331.1 161831224 5794451 complement(1525569..1525886) 1 NC_010117.1 identified by match to protein family HMM PF05015; plasmid maintenance system killer protein 1525886 5794451 COXBURSA331_A1670 Coxiella burnetii RSA 331 plasmid maintenance system killer protein YP_001597331.1 1525569 R 360115 CDS YP_001597332.1 161830999 5794658 1525572..1525724 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1525724 5794658 COXBURSA331_A1671 Coxiella burnetii RSA 331 hypothetical protein YP_001597332.1 1525572 D 360115 CDS YP_001597333.1 161831450 5793854 1526264..1527409 1 NC_010117.1 identified by match to protein family HMM PF01609; IS4 family transposase 1527409 5793854 COXBURSA331_A1672 Coxiella burnetii RSA 331 IS4 family transposase YP_001597333.1 1526264 D 360115 CDS YP_001597334.1 161830133 5793542 1527737..1529410 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1529410 5793542 COXBURSA331_A1673 Coxiella burnetii RSA 331 hypothetical protein YP_001597334.1 1527737 D 360115 CDS YP_001597335.1 161830564 5792696 complement(1529576..1529815) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1529815 5792696 COXBURSA331_A1674 Coxiella burnetii RSA 331 hypothetical protein YP_001597335.1 1529576 R 360115 CDS YP_001597336.1 161830440 5792912 1529814..1530833 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1530833 5792912 COXBURSA331_A1676 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597336.1 1529814 D 360115 CDS YP_001597337.1 161830014 5794662 complement(1530830..1531102) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1531102 5794662 COXBURSA331_A1675 Coxiella burnetii RSA 331 hypothetical protein YP_001597337.1 1530830 R 360115 CDS YP_001597338.1 161829851 5794296 1531285..1532295 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1532295 5794296 COXBURSA331_A1677 Coxiella burnetii RSA 331 hypothetical protein YP_001597338.1 1531285 D 360115 CDS YP_001597339.1 161830213 5794419 complement(1532314..1533036) 1 NC_010117.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1533036 pdxJ 5794419 pdxJ Coxiella burnetii RSA 331 pyridoxine 5'-phosphate synthase YP_001597339.1 1532314 R 360115 CDS YP_001597340.1 161831159 5794666 complement(1533118..1533981) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1533981 5794666 COXBURSA331_A1679 Coxiella burnetii RSA 331 hypothetical protein YP_001597340.1 1533118 R 360115 CDS YP_001597341.1 161831582 5793011 complement(1534004..1535404) 1 NC_010117.1 identified by similarity to GB:ABH01782.1; hypothetical protein 1535404 5793011 COXBURSA331_A1680 Coxiella burnetii RSA 331 hypothetical protein YP_001597341.1 1534004 R 360115 CDS YP_001597342.1 161830596 5794293 complement(1535482..1535613) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1535613 5794293 COXBURSA331_A1681 Coxiella burnetii RSA 331 hypothetical protein YP_001597342.1 1535482 R 360115 CDS YP_001597343.1 161831256 5792832 complement(1536955..1537659) 1 NC_010117.1 identified by match to protein family HMM PF02565; match to protein family HMM TIGR00613; DNA repair protein RecO 1537659 recO 5792832 recO Coxiella burnetii RSA 331 DNA repair protein RecO YP_001597343.1 1536955 R 360115 CDS YP_001597344.1 161829871 5794418 complement(1537656..1538543) 1 NC_010117.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1538543 era 5794418 era Coxiella burnetii RSA 331 GTP-binding protein Era YP_001597344.1 1537656 R 360115 CDS YP_001597345.1 161830652 5794580 complement(1538540..1539241) 1 NC_010117.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1539241 rnc 5794580 rnc Coxiella burnetii RSA 331 ribonuclease III YP_001597345.1 1538540 R 360115 CDS YP_001597346.1 161830079 5794548 complement(1539262..1540032) 1 NC_010117.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 1540032 lepB2 5794548 lepB2 Coxiella burnetii RSA 331 signal peptidase I YP_001597346.1 1539262 R 360115 CDS YP_001597347.1 161830780 5794426 complement(1540029..1541837) 1 NC_010117.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1541837 lepA 5794426 lepA Coxiella burnetii RSA 331 GTP-binding protein LepA YP_001597347.1 1540029 R 360115 CDS YP_001597348.1 161830210 5794030 complement(1542009..1542446) 1 NC_010117.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase family protein 1542446 5794030 COXBURSA331_A1689 Coxiella burnetii RSA 331 thioesterase family protein YP_001597348.1 1542009 R 360115 CDS YP_001597349.1 161830041 5793547 complement(1542463..1544685) 1 NC_010117.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 1544685 5793547 COXBURSA331_A1690 Coxiella burnetii RSA 331 copper-translocating P-type ATPase YP_001597349.1 1542463 R 360115 CDS YP_001597350.1 161830474 5793562 complement(1544714..1546345) 1 NC_010117.1 hypothetical protein 1546345 5793562 COXBURSA331_A1691 Coxiella burnetii RSA 331 hypothetical protein YP_001597350.1 1544714 R 360115 CDS YP_001597351.1 161830915 5793250 complement(1546423..1547772) 1 NC_010117.1 identified by match to protein family HMM PF01171; match to protein family HMM PF09179; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; tRNA(Ile)-lysidine synthase 1547772 tilS 5793250 tilS Coxiella burnetii RSA 331 tRNA(Ile)-lysidine synthase YP_001597351.1 1546423 R 360115 CDS YP_001597352.1 161831331 5793936 complement(1547748..1548698) 1 NC_010117.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1548698 accA 5793936 accA Coxiella burnetii RSA 331 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_001597352.1 1547748 R 360115 CDS YP_001597353.1 161830167 5794642 1548847..1549632 1 NC_010117.1 identified by match to protein family HMM PF02535; zinc/iron ABC transporter permease 1549632 5794642 COXBURSA331_A1695 Coxiella burnetii RSA 331 zinc/iron ABC transporter permease YP_001597353.1 1548847 D 360115 CDS YP_001597354.1 161830629 5793551 complement(1549629..1550342) 1 NC_010117.1 identified by match to protein family HMM PF00581; putative sulfurtransferase 1550342 5793551 COXBURSA331_A1694 Coxiella burnetii RSA 331 putative sulfurtransferase YP_001597354.1 1549629 R 360115 CDS YP_001597355.1 161830057 5793948 complement(1550346..1551122) 1 NC_010117.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase/reductase family oxidoreductase 1551122 5793948 COXBURSA331_A1696 Coxiella burnetii RSA 331 short chain dehydrogenase/reductase family oxidoreductase YP_001597355.1 1550346 R 360115 CDS YP_001597356.1 161830830 5794760 1551937..1552155 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1552155 5794760 COXBURSA331_A1698 Coxiella burnetii RSA 331 hypothetical protein YP_001597356.1 1551937 D 360115 CDS YP_001597357.1 161830482 5792781 1552319..1552570 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1552570 5792781 COXBURSA331_A1699 Coxiella burnetii RSA 331 hypothetical protein YP_001597357.1 1552319 D 360115 CDS YP_001597358.1 161830683 5793812 1552859..1553317 1 NC_010117.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185; RNA methyltransferase 1553317 5793812 COXBURSA331_A1700 Coxiella burnetii RSA 331 RNA methyltransferase YP_001597358.1 1552859 D 360115 CDS YP_001597359.1 161830383 5794444 complement(1553345..1554343) 1 NC_010117.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1554343 gpsA 5794444 gpsA Coxiella burnetii RSA 331 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001597359.1 1553345 R 360115 CDS YP_001597360.1 161830186 5794034 complement(1554412..1554897) 1 NC_010117.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 1554897 secB 5794034 secB Coxiella burnetii RSA 331 preprotein translocase subunit SecB YP_001597360.1 1554412 R 360115 CDS YP_001597361.1 161831235 5793141 complement(1554910..1555167) 1 NC_010117.1 identified by match to protein family HMM PF00462; match to protein family HMM PF05768; match to protein family HMM TIGR02181; glutaredoxin 3 1555167 grxC 5793141 grxC Coxiella burnetii RSA 331 glutaredoxin 3 YP_001597361.1 1554910 R 360115 CDS YP_001597362.1 161831047 5793539 complement(1555172..1555597) 1 NC_010117.1 identified by match to protein family HMM PF00581; putative sulfurtransferase 1555597 5793539 COXBURSA331_A1704 Coxiella burnetii RSA 331 putative sulfurtransferase YP_001597362.1 1555172 R 360115 CDS YP_001597363.1 161831188 5793860 complement(1557031..1558326) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1558326 5793860 COXBURSA331_A1706 Coxiella burnetii RSA 331 hypothetical protein YP_001597363.1 1557031 R 360115 CDS YP_001597364.1 161829911 5794431 complement(1558380..1560056) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1560056 5794431 COXBURSA331_A1707 Coxiella burnetii RSA 331 hypothetical protein YP_001597364.1 1558380 R 360115 CDS YP_001597365.1 161830338 5794024 1560276..1561658 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1561658 5794024 COXBURSA331_A1708 Coxiella burnetii RSA 331 hypothetical protein YP_001597365.1 1560276 D 360115 CDS YP_001597366.1 161831107 5794295 1561748..1561864 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1561864 5794295 COXBURSA331_A1710 Coxiella burnetii RSA 331 hypothetical protein YP_001597366.1 1561748 D 360115 CDS YP_001597367.1 161830277 5793540 complement(1561830..1563740) 1 NC_010117.1 identified by match to protein family HMM PF00326; peptidase catalytic subunit 1563740 5793540 COXBURSA331_A1709 Coxiella burnetii RSA 331 peptidase catalytic subunit YP_001597367.1 1561830 R 360115 CDS YP_001597368.1 161829882 5794023 1565943..1566962 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1566962 5794023 COXBURSA331_A1715 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597368.1 1565943 D 360115 CDS YP_001597369.1 161830321 5792701 complement(1566959..1567231) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1567231 5792701 COXBURSA331_A1714 Coxiella burnetii RSA 331 hypothetical protein YP_001597369.1 1566959 R 360115 CDS YP_001597370.1 161831478 5793513 complement(1569523..1569732) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1569732 5793513 COXBURSA331_A1717 Coxiella burnetii RSA 331 hypothetical protein YP_001597370.1 1569523 R 360115 CDS YP_001597371.1 161830068 5792722 complement(1569952..1570791) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1570791 5792722 COXBURSA331_A1718 Coxiella burnetii RSA 331 hypothetical protein YP_001597371.1 1569952 R 360115 CDS YP_001597372.1 161829746 5792761 complement(1570865..1570990) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1570990 5792761 COXBURSA331_A1719 Coxiella burnetii RSA 331 hypothetical protein YP_001597372.1 1570865 R 360115 CDS YP_001597373.1 161830441 5794793 1570956..1572515 1 NC_010117.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 1572515 gpmI 5794793 gpmI Coxiella burnetii RSA 331 phosphoglyceromutase YP_001597373.1 1570956 D 360115 CDS YP_001597374.1 161830899 5793402 1572651..1573760 1 NC_010117.1 identified by match to protein family HMM PF01551; M23 peptidase domain-containing protein 1573760 5793402 COXBURSA331_A1721 Coxiella burnetii RSA 331 M23 peptidase domain-containing protein YP_001597374.1 1572651 D 360115 CDS YP_001597375.1 161830967 5794557 1573757..1575127 1 NC_010117.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; C-terminal processing peptidase 1575127 5794557 COXBURSA331_A1722 Coxiella burnetii RSA 331 C-terminal processing peptidase YP_001597375.1 1573757 D 360115 CDS YP_001597376.1 161831514 5793504 1575157..1576431 1 NC_010117.1 identified by match to protein family HMM PF01490; match to protein family HMM PF03222; tryptophan/tyrosine permease family protein 1576431 5793504 COXBURSA331_A1723 Coxiella burnetii RSA 331 tryptophan/tyrosine permease family protein YP_001597376.1 1575157 D 360115 CDS YP_001597377.1 161829773 5793759 complement(1576469..1576732) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1576732 5793759 COXBURSA331_A1724 Coxiella burnetii RSA 331 hypothetical protein YP_001597377.1 1576469 R 360115 CDS YP_001597378.1 161830261 5792786 complement(1576954..1577283) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1577283 5792786 COXBURSA331_A1725 Coxiella burnetii RSA 331 hypothetical protein YP_001597378.1 1576954 R 360115 CDS YP_001597379.1 161831174 5793274 1577328..1577420 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1577420 5793274 COXBURSA331_A1726 Coxiella burnetii RSA 331 hypothetical protein YP_001597379.1 1577328 D 360115 CDS YP_001597380.1 161830722 5792833 complement(1577598..1578164) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1578164 5792833 COXBURSA331_A1727 Coxiella burnetii RSA 331 hypothetical protein YP_001597380.1 1577598 R 360115 CDS YP_001597381.1 161830505 5793813 1579879..1580040 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1580040 5793813 COXBURSA331_A1729 Coxiella burnetii RSA 331 hypothetical protein YP_001597381.1 1579879 D 360115 CDS YP_001597382.1 161830082 5793544 1580094..1580228 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1580228 5793544 COXBURSA331_A1730 Coxiella burnetii RSA 331 hypothetical protein YP_001597382.1 1580094 D 360115 CDS YP_001597383.1 161831612 5793559 complement(1580312..1581106) 1 NC_010117.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1581106 thyA 5793559 thyA Coxiella burnetii RSA 331 thymidylate synthase YP_001597383.1 1580312 R 360115 CDS YP_001597384.1 161831193 5793558 complement(1581103..1581477) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1581477 5793558 COXBURSA331_A1732 Coxiella burnetii RSA 331 hypothetical protein YP_001597384.1 1581103 R 360115 CDS YP_001597385.1 161830782 5793878 complement(1581479..1582264) 1 NC_010117.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1582264 lgt 5793878 lgt Coxiella burnetii RSA 331 prolipoprotein diacylglyceryl transferase YP_001597385.1 1581479 R 360115 CDS YP_001597386.1 161830471 5793361 complement(1582319..1584598) 1 NC_010117.1 identified by match to protein family HMM PF00391; match to protein family HMM PF01590; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase 1584598 ptsP 5793361 ptsP Coxiella burnetii RSA 331 phosphoenolpyruvate-protein phosphotransferase YP_001597386.1 1582319 R 360115 CDS YP_001597387.1 161830434 5793560 complement(1584600..1585109) 1 NC_010117.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1585109 nudH 5793560 nudH Coxiella burnetii RSA 331 dinucleoside polyphosphate hydrolase YP_001597387.1 1584600 R 360115 CDS YP_001597388.1 161831609 5793080 1585626..1588451 1 NC_010117.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1588451 5793080 COXBURSA331_A1736 Coxiella burnetii RSA 331 ribonucleotide-diphosphate reductase subunit alpha YP_001597388.1 1585626 D 360115 CDS YP_001597389.1 161831080 5793510 1588501..1589706 1 NC_010117.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 1589706 5793510 COXBURSA331_A1737 Coxiella burnetii RSA 331 ribonucleotide-diphosphate reductase subunit beta YP_001597389.1 1588501 D 360115 CDS YP_001597390.1 161830794 5793756 complement(1589740..1589853) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1589853 5793756 COXBURSA331_A1738 Coxiella burnetii RSA 331 hypothetical protein YP_001597390.1 1589740 R 360115 CDS YP_001597391.1 161829888 5794432 1589887..1590906 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1590906 5794432 COXBURSA331_A1740 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597391.1 1589887 D 360115 CDS YP_001597392.1 161830231 5794031 complement(1590903..1591175) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1591175 5794031 COXBURSA331_A1739 Coxiella burnetii RSA 331 hypothetical protein YP_001597392.1 1590903 R 360115 CDS YP_001597393.1 161831086 5793698 1591371..1592516 1 NC_010117.1 identified by match to protein family HMM PF01609; IS4 family transposase 1592516 5793698 COXBURSA331_A1741 Coxiella burnetii RSA 331 IS4 family transposase YP_001597393.1 1591371 D 360115 CDS YP_001597394.1 161831462 5793546 1592626..1594329 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1594329 5793546 COXBURSA331_A1743 Coxiella burnetii RSA 331 hypothetical protein YP_001597394.1 1592626 D 360115 CDS YP_001597395.1 161830791 5794421 complement(1592742..1592870) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1592870 5794421 COXBURSA331_A1742 Coxiella burnetii RSA 331 hypothetical protein YP_001597395.1 1592742 R 360115 CDS YP_001597396.1 161830787 5793736 1594519..1594626 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1594626 5793736 COXBURSA331_A1744 Coxiella burnetii RSA 331 hypothetical protein YP_001597396.1 1594519 D 360115 CDS YP_001597397.1 161831035 5792766 1594717..1594992 1 NC_010117.1 identified by match to protein family HMM TIGR02605; FmdB family regulatory protein 1594992 5792766 COXBURSA331_A1745 Coxiella burnetii RSA 331 FmdB family regulatory protein YP_001597397.1 1594717 D 360115 CDS YP_001597398.1 161831449 5793564 1594989..1595618 1 NC_010117.1 identified by match to protein family HMM PF04367; hypothetical protein 1595618 5793564 COXBURSA331_A1746 Coxiella burnetii RSA 331 hypothetical protein YP_001597398.1 1594989 D 360115 CDS YP_001597399.1 161831049 5794435 1595879..1596007 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1596007 5794435 COXBURSA331_A1747 Coxiella burnetii RSA 331 hypothetical protein YP_001597399.1 1595879 D 360115 CDS YP_001597400.1 161829881 5793739 1596163..1596924 1 NC_010117.1 hypothetical protein 1596924 5793739 COXBURSA331_A1749 Coxiella burnetii RSA 331 hypothetical protein YP_001597400.1 1596163 D 360115 CDS YP_001597401.1 161830093 5794422 complement(1598591..1599466) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1599466 5794422 COXBURSA331_A1750 Coxiella burnetii RSA 331 hypothetical protein YP_001597401.1 1598591 R 360115 CDS YP_001597402.1 161830701 5794766 1599621..1601393 1 NC_010117.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1601393 aspS 5794766 aspS Coxiella burnetii RSA 331 aspartyl-tRNA synthetase YP_001597402.1 1599621 D 360115 CDS YP_001597403.1 161830968 5794779 1601409..1602143 1 NC_010117.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 1602143 5794779 COXBURSA331_A1752 Coxiella burnetii RSA 331 hypothetical protein YP_001597403.1 1601409 D 360115 CDS YP_001597404.1 161830597 5793530 1602259..1602777 1 NC_010117.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1602777 ruvC 5793530 ruvC Coxiella burnetii RSA 331 Holliday junction resolvase YP_001597404.1 1602259 D 360115 CDS YP_001597405.1 161831144 5794439 1602774..1603376 1 NC_010117.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1603376 ruvA 5794439 ruvA Coxiella burnetii RSA 331 Holliday junction DNA helicase RuvA YP_001597405.1 1602774 D 360115 CDS YP_001597406.1 161829825 5793553 1605237..1606292 1 NC_010117.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1606292 ruvB 5793553 ruvB Coxiella burnetii RSA 331 Holliday junction DNA helicase RuvB YP_001597406.1 1605237 D 360115 CDS YP_001597407.1 161830735 5792850 1606378..1606650 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1606650 5792850 COXBURSA331_A1758 Coxiella burnetii RSA 331 hypothetical protein YP_001597407.1 1606378 D 360115 CDS YP_001597408.1 161831541 5793524 1607664..1607816 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1607816 5793524 COXBURSA331_A1759 Coxiella burnetii RSA 331 hypothetical protein YP_001597408.1 1607664 D 360115 CDS YP_001597409.1 161830814 5793926 1609165..1609878 1 NC_010117.1 identified by match to protein family HMM PF01618; match to protein family HMM TIGR02796; TolQ protein 1609878 tolQ 5793926 tolQ Coxiella burnetii RSA 331 TolQ protein YP_001597409.1 1609165 D 360115 CDS YP_001597410.1 161831093 5793517 1609856..1610299 1 NC_010117.1 identified by match to protein family HMM PF02472; match to protein family HMM TIGR02801; protein TolR 1610299 tolR 5793517 tolR Coxiella burnetii RSA 331 protein TolR YP_001597410.1 1609856 D 360115 CDS YP_001597411.1 161829884 5793909 1610442..1612961 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1612961 5793909 COXBURSA331_A1764 Coxiella burnetii RSA 331 hypothetical protein YP_001597411.1 1610442 D 360115 CDS YP_001597412.1 161831280 5793788 complement(1612927..1613871) 1 NC_010117.1 identified by match to protein family HMM PF01476; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 1613871 5793788 COXBURSA331_A1763 Coxiella burnetii RSA 331 ErfK/YbiS/YcfS/YnhG family protein YP_001597412.1 1612927 R 360115 CDS YP_001597413.1 161830403 5793787 complement(1613874..1614710) 1 NC_010117.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; YihY family protein 1614710 5793787 COXBURSA331_A1765 Coxiella burnetii RSA 331 YihY family protein YP_001597413.1 1613874 R 360115 CDS YP_001597414.1 161831509 5794269 1614821..1615414 1 NC_010117.1 identified by match to protein family HMM PF00258; match to protein family HMM TIGR01755; NAD(P)H:quinone oxidoreductase, type IV 1615414 wrbA 5794269 wrbA Coxiella burnetii RSA 331 NAD(P)H:quinone oxidoreductase, type IV YP_001597414.1 1614821 D 360115 CDS YP_001597415.1 161830097 5792887 1615411..1616508 1 NC_010117.1 identified by match to protein family HMM PF03969; AFG1 family ATPase 1616508 5792887 COXBURSA331_A1767 Coxiella burnetii RSA 331 AFG1 family ATPase YP_001597415.1 1615411 D 360115 CDS YP_001597416.1 161830856 5794427 1616804..1616890 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1616890 5794427 COXBURSA331_A1768 Coxiella burnetii RSA 331 hypothetical protein YP_001597416.1 1616804 D 360115 CDS YP_001597417.1 161830676 5793100 complement(1617082..1617462) 1 NC_010117.1 identified by match to protein family HMM PF03334; match to protein family HMM TIGR01300; Na(+)/H(+) antiporter subunit G 1617462 mrpG 5793100 mrpG Coxiella burnetii RSA 331 Na(+)/H(+) antiporter subunit G YP_001597417.1 1617082 R 360115 CDS YP_001597418.1 161830721 5794413 complement(1617455..1617757) 1 NC_010117.1 identified by match to protein family HMM PF04066; Na(+)/H(+) antiporter subunit F 1617757 mrpF 5794413 mrpF Coxiella burnetii RSA 331 Na(+)/H(+) antiporter subunit F YP_001597418.1 1617455 R 360115 CDS YP_001597419.1 161831258 5793180 complement(1617754..1618101) 1 NC_010117.1 identified by match to protein family HMM PF01899; Na(+)/H(+) antiporter subunit E 1618101 mrpE 5793180 mrpE Coxiella burnetii RSA 331 Na(+)/H(+) antiporter subunit E YP_001597419.1 1617754 R 360115 CDS YP_001597420.1 161829867 5793372 complement(1618098..1619597) 1 NC_010117.1 identified by match to protein family HMM PF00361; Na(+)/H(+) antiporter subunit D 1619597 mrpD 5793372 mrpD Coxiella burnetii RSA 331 Na(+)/H(+) antiporter subunit D YP_001597420.1 1618098 R 360115 CDS YP_001597421.1 161830349 5794443 complement(1619594..1619965) 1 NC_010117.1 identified by match to protein family HMM PF00420; Na(+)/H(+) antiporter subunit C 1619965 mrpC 5794443 mrpC Coxiella burnetii RSA 331 Na(+)/H(+) antiporter subunit C YP_001597421.1 1619594 R 360115 CDS YP_001597422.1 161831207 5794022 complement(1620366..1622672) 1 NC_010117.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A 1622672 mrpA 5794022 mrpA Coxiella burnetii RSA 331 putative monovalent cation/H+ antiporter subunit A YP_001597422.1 1620366 R 360115 CDS YP_001597423.1 161830792 5794540 complement(1622793..1623098) 1 NC_010117.1 hypothetical protein 1623098 5794540 COXBURSA331_A1776 Coxiella burnetii RSA 331 hypothetical protein YP_001597423.1 1622793 R 360115 CDS YP_001597424.1 161831175 5793954 1623187..1624440 1 NC_010117.1 identified by match to protein family HMM PF00999; Na(+)/H(+) antiporter NhaP 1624440 nhaP 5793954 nhaP Coxiella burnetii RSA 331 Na(+)/H(+) antiporter NhaP YP_001597424.1 1623187 D 360115 CDS YP_001597425.1 161830617 5793479 1624573..1624845 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1624845 5793479 COXBURSA331_A1779 Coxiella burnetii RSA 331 hypothetical protein YP_001597425.1 1624573 D 360115 CDS YP_001597426.1 161830762 5793751 complement(1624842..1625861) 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1625861 5793751 COXBURSA331_A1778 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597426.1 1624842 R 360115 CDS YP_001597427.1 161830173 5794145 1625860..1626003 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1626003 5794145 COXBURSA331_A1780 Coxiella burnetii RSA 331 hypothetical protein YP_001597427.1 1625860 D 360115 CDS YP_001597428.1 161829908 5794102 1626072..1626296 1 NC_010117.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1626296 rpsU 5794102 rpsU Coxiella burnetii RSA 331 30S ribosomal protein S21 YP_001597428.1 1626072 D 360115 CDS YP_001597429.1 161831040 5793157 1626324..1626773 1 NC_010117.1 identified by match to protein family HMM PF02637; GatB/YqeY domain-containing protein 1626773 5793157 COXBURSA331_A1782 Coxiella burnetii RSA 331 GatB/YqeY domain-containing protein YP_001597429.1 1626324 D 360115 CDS YP_001597430.1 161829861 5794225 1626871..1628532 1 NC_010117.1 identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM PF08278; match to protein family HMM TIGR01391; DNA primase 1628532 dnaG 5794225 dnaG Coxiella burnetii RSA 331 DNA primase YP_001597430.1 1626871 D 360115 CDS YP_001597431.1 161831165 5794524 1628652..1630748 1 NC_010117.1 identified by match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04546; match to protein family HMM TIGR02393; match to protein family HMM TIGR02937; RNA polymerase sigma factor RpoD 1630748 rpoD 5794524 rpoD Coxiella burnetii RSA 331 RNA polymerase sigma factor RpoD YP_001597431.1 1628652 D 360115 CDS YP_001597432.1 161830942 5793165 complement(1633447..1633992) 1 NC_010117.1 identified by match to protein family HMM PF02462; opacity family porin protein 1633992 5793165 COXBURSA331_A1789 Coxiella burnetii RSA 331 opacity family porin protein YP_001597432.1 1633447 R 360115 CDS YP_001597433.1 161830685 5794871 1634805..1635710 1 NC_010117.1 identified by match to protein family HMM PF02655; match to protein family HMM PF08443; match to protein family HMM TIGR00768; ribosomal protein S6 modification protein 1635710 rimK 5794871 rimK Coxiella burnetii RSA 331 ribosomal protein S6 modification protein YP_001597433.1 1634805 D 360115 CDS YP_001597434.1 161830401 5793002 1635713..1636741 1 NC_010117.1 identified by match to protein family HMM PF04952; succinylglutamate desuccinylase/aspartoacylase family protein 1636741 5793002 COXBURSA331_A1792 Coxiella burnetii RSA 331 succinylglutamate desuccinylase/aspartoacylase family protein YP_001597434.1 1635713 D 360115 CDS YP_001597435.1 161831508 5793063 1639180..1639365 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1639365 5793063 COXBURSA331_A1794 Coxiella burnetii RSA 331 hypothetical protein YP_001597435.1 1639180 D 360115 CDS YP_001597436.1 161830101 5793038 complement(1639391..1639789) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1639789 5793038 COXBURSA331_A1795 Coxiella burnetii RSA 331 hypothetical protein YP_001597436.1 1639391 R 360115 CDS YP_001597437.1 161830647 5793988 complement(1640087..1640425) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1640425 5793988 COXBURSA331_A1796 Coxiella burnetii RSA 331 hypothetical protein YP_001597437.1 1640087 R 360115 CDS YP_001597438.1 161831596 5793263 complement(1640449..1641900) 1 NC_010117.1 identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 1641900 5793263 COXBURSA331_A1797 Coxiella burnetii RSA 331 ankyrin repeat-containing protein YP_001597438.1 1640449 R 360115 CDS YP_001597439.1 161830092 5793485 complement(1642480..1642635) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1642635 5793485 COXBURSA331_A1798 Coxiella burnetii RSA 331 hypothetical protein YP_001597439.1 1642480 R 360115 CDS YP_001597440.1 161830233 5792842 complement(1643184..1643339) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1643339 5792842 COXBURSA331_A1799 Coxiella burnetii RSA 331 hypothetical protein YP_001597440.1 1643184 R 360115 CDS YP_001597441.1 161831400 5794838 complement(1643908..1644510) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1644510 5794838 COXBURSA331_A1802 Coxiella burnetii RSA 331 hypothetical protein YP_001597441.1 1643908 R 360115 CDS YP_001597442.1 161829855 5793798 complement(1644682..1645125) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1645125 5793798 COXBURSA331_A1803 Coxiella burnetii RSA 331 hypothetical protein YP_001597442.1 1644682 R 360115 CDS YP_001597443.1 161830549 5794406 1645828..1646127 1 NC_010117.1 identified by similarity to GB:ABG84151.1; hypothetical protein 1646127 5794406 COXBURSA331_A1804 Coxiella burnetii RSA 331 hypothetical protein YP_001597443.1 1645828 D 360115 CDS YP_001597444.1 161831083 5794704 1646572..1646709 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1646709 5794704 COXBURSA331_A1805 Coxiella burnetii RSA 331 hypothetical protein YP_001597444.1 1646572 D 360115 CDS YP_001597445.1 161830763 5793405 complement(1646724..1649735) 1 NC_010117.1 IcmB protein 1649735 icmB 5793405 icmB Coxiella burnetii RSA 331 IcmB protein YP_001597445.1 1646724 R 360115 CDS YP_001597446.1 161831194 5794192 complement(1649808..1650443) 1 NC_010117.1 IcmJ protein 1650443 icmJ 5794192 icmJ Coxiella burnetii RSA 331 IcmJ protein YP_001597446.1 1649808 R 360115 CDS YP_001597447.1 161830217 5793740 complement(1650459..1650875) 1 NC_010117.1 IcmD protein 1650875 icmD 5793740 icmD Coxiella burnetii RSA 331 IcmD protein YP_001597447.1 1650459 R 360115 CDS YP_001597448.1 161830267 5792820 complement(1650970..1651479) 1 NC_010117.1 IcmC protein 1651479 icmC 5792820 icmC Coxiella burnetii RSA 331 IcmC protein YP_001597448.1 1650970 R 360115 CDS YP_001597449.1 161831549 5794150 complement(1651550..1652284) 1 NC_010117.1 IcmG protein 1652284 icmG 5794150 icmG Coxiella burnetii RSA 331 IcmG protein YP_001597449.1 1651550 R 360115 CDS YP_001597450.1 161829987 5794161 complement(1652302..1655406) 1 NC_010117.1 identified by match to protein family HMM PF00805; match to protein family HMM PF03743; IcmE protein 1655406 icmE 5794161 icmE Coxiella burnetii RSA 331 IcmE protein YP_001597450.1 1652302 R 360115 CDS YP_001597451.1 161830902 5794311 complement(1655408..1656445) 1 NC_010117.1 IcmK protein 1656445 icmK 5794311 icmK Coxiella burnetii RSA 331 IcmK protein YP_001597451.1 1655408 R 360115 CDS YP_001597452.1 161831326 5793451 complement(1656474..1657130) 1 NC_010117.1 IcmL protein 1657130 icmL1 5793451 icmL1 Coxiella burnetii RSA 331 IcmL protein YP_001597452.1 1656474 R 360115 CDS YP_001597453.1 161829813 5794359 complement(1657132..1657755) 1 NC_010117.1 IcmL protein 1657755 icmL2 5794359 icmL2 Coxiella burnetii RSA 331 IcmL protein YP_001597453.1 1657132 R 360115 CDS YP_001597454.1 161830197 5792746 complement(1657762..1658274) 1 NC_010117.1 identified by match to protein family HMM PF00691; ompA family protein 1658274 5792746 COXBURSA331_A1815 Coxiella burnetii RSA 331 ompA family protein YP_001597454.1 1657762 R 360115 CDS YP_001597455.1 161831537 5794282 complement(1658410..1660788) 1 NC_010117.1 IcmO protein 1660788 icmO 5794282 icmO Coxiella burnetii RSA 331 IcmO protein YP_001597455.1 1658410 R 360115 CDS YP_001597456.1 161829879 5792835 complement(1660764..1661927) 1 NC_010117.1 IcmP protein 1661927 icmP 5792835 icmP Coxiella burnetii RSA 331 IcmP protein YP_001597456.1 1660764 R 360115 CDS YP_001597457.1 161830945 5793211 complement(1661928..1662644) 1 NC_010117.1 identified by match to protein family HMM TIGR02527; IcmQ protein 1662644 icmQ 5793211 icmQ Coxiella burnetii RSA 331 IcmQ protein YP_001597457.1 1661928 R 360115 CDS YP_001597458.1 161831192 5793214 complement(1662641..1662790) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1662790 5793214 COXBURSA331_A1819 Coxiella burnetii RSA 331 hypothetical protein YP_001597458.1 1662641 R 360115 CDS YP_001597459.1 161831490 5794016 1662960..1663079 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1663079 5794016 COXBURSA331_A1820 Coxiella burnetii RSA 331 hypothetical protein YP_001597459.1 1662960 D 360115 CDS YP_001597460.1 161830891 5793235 complement(1663418..1664317) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1664317 5793235 COXBURSA331_A1821 Coxiella burnetii RSA 331 hypothetical protein YP_001597460.1 1663418 R 360115 CDS YP_001597461.1 161831308 5793170 1664444..1664581 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1664581 5793170 COXBURSA331_A1822 Coxiella burnetii RSA 331 hypothetical protein YP_001597461.1 1664444 D 360115 CDS YP_001597462.1 161829850 5793931 complement(1664678..1665883) 1 NC_010117.1 hypothetical protein 1665883 5793931 COXBURSA331_A1823 Coxiella burnetii RSA 331 hypothetical protein YP_001597462.1 1664678 R 360115 CDS YP_001597463.1 161831477 5792725 complement(1665995..1667191) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1667191 5792725 COXBURSA331_A1824 Coxiella burnetii RSA 331 hypothetical protein YP_001597463.1 1665995 R 360115 CDS YP_001597464.1 161830123 5793471 complement(1667266..1667412) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1667412 5793471 COXBURSA331_A1825 Coxiella burnetii RSA 331 hypothetical protein YP_001597464.1 1667266 R 360115 CDS YP_001597465.1 161830536 5794513 1667419..1667691 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1667691 5794513 COXBURSA331_A1827 Coxiella burnetii RSA 331 hypothetical protein YP_001597465.1 1667419 D 360115 CDS YP_001597466.1 161829988 5793629 complement(1667688..1668707) 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1668707 5793629 COXBURSA331_A1826 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597466.1 1667688 R 360115 CDS YP_001597467.1 161830566 5794319 1668706..1668888 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1668888 5794319 COXBURSA331_A1828 Coxiella burnetii RSA 331 hypothetical protein YP_001597467.1 1668706 D 360115 CDS YP_001597468.1 161830824 5793132 1668899..1669156 1 NC_010117.1 IcmT protein 1669156 icmT 5793132 icmT Coxiella burnetii RSA 331 IcmT protein YP_001597468.1 1668899 D 360115 CDS YP_001597469.1 161831360 5792772 1669156..1669494 1 NC_010117.1 IcmS protein 1669494 icmS 5792772 icmS Coxiella burnetii RSA 331 IcmS protein YP_001597469.1 1669156 D 360115 CDS YP_001597470.1 161831227 5794212 1669651..1670160 1 NC_010117.1 DotD protein 1670160 dotD 5794212 dotD Coxiella burnetii RSA 331 DotD protein YP_001597470.1 1669651 D 360115 CDS YP_001597471.1 161831630 5793828 1670163..1670987 1 NC_010117.1 DotC protein 1670987 dotC 5793828 dotC Coxiella burnetii RSA 331 DotC protein YP_001597471.1 1670163 D 360115 CDS YP_001597472.1 161830407 5794364 1671025..1672143 1 NC_010117.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR02524; Dot/Icm secretion system ATPase DotB 1672143 dotB 5794364 dotB Coxiella burnetii RSA 331 Dot/Icm secretion system ATPase DotB YP_001597472.1 1671025 D 360115 CDS YP_001597473.1 161829782 5794586 1672150..1673529 1 NC_010117.1 putative transporter 1673529 5794586 COXBURSA331_A1834 Coxiella burnetii RSA 331 putative transporter YP_001597473.1 1672150 D 360115 CDS YP_001597474.1 161831347 5793104 1673649..1673921 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1673921 5793104 COXBURSA331_A1836 Coxiella burnetii RSA 331 hypothetical protein YP_001597474.1 1673649 D 360115 CDS YP_001597475.1 161830843 5793176 complement(1673918..1674937) 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1674937 5793176 COXBURSA331_A1835 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597475.1 1673918 R 360115 CDS YP_001597476.1 161830451 5794456 1675232..1676659 1 NC_010117.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 1676659 hldE 5794456 hldE Coxiella burnetii RSA 331 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_001597476.1 1675232 D 360115 CDS YP_001597477.1 161829819 5793258 1677047..1677319 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1677319 5793258 COXBURSA331_A1840 Coxiella burnetii RSA 331 hypothetical protein YP_001597477.1 1677047 D 360115 CDS YP_001597478.1 161831109 5794026 complement(1677316..1678335) 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1678335 5794026 COXBURSA331_A1839 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597478.1 1677316 R 360115 CDS YP_001597479.1 161831145 5792916 complement(1678766..1678858) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1678858 5792916 COXBURSA331_A1841 Coxiella burnetii RSA 331 hypothetical protein YP_001597479.1 1678766 R 360115 CDS YP_001597480.1 161830259 5793232 complement(1678940..1680070) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1680070 5793232 COXBURSA331_A1842 Coxiella burnetii RSA 331 hypothetical protein YP_001597480.1 1678940 R 360115 CDS YP_001597481.1 161830926 5794402 complement(1680086..1680544) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1680544 5794402 COXBURSA331_A1843 Coxiella burnetii RSA 331 hypothetical protein YP_001597481.1 1680086 R 360115 CDS YP_001597482.1 161830416 5794374 complement(1680541..1680990) 1 NC_010117.1 IcmW protein 1680990 icmW 5794374 icmW Coxiella burnetii RSA 331 IcmW protein YP_001597482.1 1680541 R 360115 CDS YP_001597483.1 161830275 5792742 1681219..1681677 1 NC_010117.1 IcmV protein 1681677 icmV 5792742 icmV Coxiella burnetii RSA 331 IcmV protein YP_001597483.1 1681219 D 360115 CDS YP_001597484.1 161831559 5794668 1681694..1684114 1 NC_010117.1 DotA protein 1684114 dotA 5794668 dotA Coxiella burnetii RSA 331 DotA protein YP_001597484.1 1681694 D 360115 CDS YP_001597485.1 161831468 5792938 1684523..1685542 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1685542 5792938 COXBURSA331_A1848 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597485.1 1684523 D 360115 CDS YP_001597486.1 161831138 5793408 complement(1685539..1685811) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1685811 5793408 COXBURSA331_A1847 Coxiella burnetii RSA 331 hypothetical protein YP_001597486.1 1685539 R 360115 CDS YP_001597487.1 161830035 5793651 complement(1685935..1686699) 1 NC_010117.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 1686699 5793651 COXBURSA331_A1849 Coxiella burnetii RSA 331 glycosyl transferase family protein YP_001597487.1 1685935 R 360115 CDS YP_001597488.1 161829909 5793227 complement(1686740..1687825) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1687825 5793227 COXBURSA331_A1850 Coxiella burnetii RSA 331 hypothetical protein YP_001597488.1 1686740 R 360115 CDS YP_001597489.1 161831383 5792960 1687895..1689184 1 NC_010117.1 identified by match to protein family HMM PF04932; hypothetical protein 1689184 5792960 COXBURSA331_A1851 Coxiella burnetii RSA 331 hypothetical protein YP_001597489.1 1687895 D 360115 CDS YP_001597490.1 161830592 5794811 1689181..1690065 1 NC_010117.1 hypothetical protein 1690065 5794811 COXBURSA331_A1853 Coxiella burnetii RSA 331 hypothetical protein YP_001597490.1 1689181 D 360115 CDS YP_001597491.1 161830744 5794202 complement(1690050..1691081) 1 NC_010117.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195; lipopolysaccharide heptosyltransferase II 1691081 rfaF 5794202 rfaF Coxiella burnetii RSA 331 lipopolysaccharide heptosyltransferase II YP_001597491.1 1690050 R 360115 CDS YP_001597492.1 161830185 5793650 complement(1691085..1691288) 1 NC_010117.1 hypothetical protein 1691288 5793650 COXBURSA331_A1854 Coxiella burnetii RSA 331 hypothetical protein YP_001597492.1 1691085 R 360115 CDS YP_001597493.1 161831436 5793981 complement(1691352..1691483) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1691483 5793981 COXBURSA331_A1855 Coxiella burnetii RSA 331 hypothetical protein YP_001597493.1 1691352 R 360115 CDS YP_001597494.1 161831479 5794018 1691554..1692147 1 NC_010117.1 identified by match to protein family HMM PF00571; hypothetical protein 1692147 5794018 COXBURSA331_A1857 Coxiella burnetii RSA 331 hypothetical protein YP_001597494.1 1691554 D 360115 CDS YP_001597495.1 161830932 5793133 complement(1692144..1693883) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1693883 5793133 COXBURSA331_A1856 Coxiella burnetii RSA 331 hypothetical protein YP_001597495.1 1692144 R 360115 CDS YP_001597496.1 161830164 5794641 complement(1693923..1694306) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1694306 5794641 COXBURSA331_A1858 Coxiella burnetii RSA 331 hypothetical protein YP_001597496.1 1693923 R 360115 CDS YP_001597497.1 161830224 5793475 complement(1694324..1695205) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1695205 5793475 COXBURSA331_A1859 Coxiella burnetii RSA 331 hypothetical protein YP_001597497.1 1694324 R 360115 CDS YP_001597498.1 161831369 5794003 complement(1695190..1695651) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1695651 5794003 COXBURSA331_A1860 Coxiella burnetii RSA 331 hypothetical protein YP_001597498.1 1695190 R 360115 CDS YP_001597499.1 161829847 5793796 complement(1695899..1696957) 1 NC_010117.1 identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02394; match to protein family HMM TIGR02937; RNA polymerase sigma factor RpoS 1696957 rpoS 5793796 rpoS Coxiella burnetii RSA 331 RNA polymerase sigma factor RpoS YP_001597499.1 1695899 R 360115 CDS YP_001597500.1 161831053 5794609 complement(1697037..1697729) 1 NC_010117.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551; putative lipoprotein NlpD 1697729 5794609 COXBURSA331_A1862 Coxiella burnetii RSA 331 putative lipoprotein NlpD YP_001597500.1 1697037 R 360115 CDS YP_001597501.1 161831464 5793688 complement(1697731..1698507) 1 NC_010117.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1698507 surE 5793688 surE Coxiella burnetii RSA 331 stationary phase survival protein SurE YP_001597501.1 1697731 R 360115 CDS YP_001597502.1 161831525 5793869 complement(1698576..1698845) 1 NC_010117.1 identified by match to protein family HMM PF04977; cell division protein ftsB 1698845 ftsB 5793869 ftsB Coxiella burnetii RSA 331 cell division protein ftsB YP_001597502.1 1698576 R 360115 CDS YP_001597503.1 161830114 5793179 complement(1698852..1700138) 1 NC_010117.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1700138 eno 5793179 eno Coxiella burnetii RSA 331 phosphopyruvate hydratase YP_001597503.1 1698852 R 360115 CDS YP_001597504.1 161830037 5792898 complement(1700295..1701131) 1 NC_010117.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1701131 kdsA 5792898 kdsA Coxiella burnetii RSA 331 2-dehydro-3-deoxyphosphooctonate aldolase YP_001597504.1 1700295 R 360115 CDS YP_001597505.1 161831152 5794809 complement(1702604..1703038) 1 NC_010117.1 identified by match to protein family HMM PF01814; hemerythrin HHE cation binding domain-containing protein 1703038 5794809 COXBURSA331_A1868 Coxiella burnetii RSA 331 hemerythrin HHE cation binding domain-containing protein YP_001597505.1 1702604 R 360115 CDS YP_001597506.1 161830803 5792876 1703171..1703683 1 NC_010117.1 identified by match to protein family HMM PF00583; diamine N-acetyltransferase 1703683 speG 5792876 speG Coxiella burnetii RSA 331 diamine N-acetyltransferase YP_001597506.1 1703171 D 360115 CDS YP_001597507.1 161829718 5794320 1703942..1704250 1 NC_010117.1 identified by similarity to GB:AAM30061.1; hypothetical protein 1704250 5794320 COXBURSA331_A1870 Coxiella burnetii RSA 331 hypothetical protein YP_001597507.1 1703942 D 360115 CDS YP_001597508.1 161830816 5793194 complement(1705269..1705526) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1705526 5793194 COXBURSA331_A1871 Coxiella burnetii RSA 331 hypothetical protein YP_001597508.1 1705269 R 360115 CDS YP_001597509.1 161831471 5793990 complement(1705606..1707273) 1 NC_010117.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1707273 pyrG 5793990 pyrG Coxiella burnetii RSA 331 CTP synthetase YP_001597509.1 1705606 R 360115 CDS YP_001597510.1 161830076 5792690 complement(1707308..1707439) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1707439 5792690 COXBURSA331_A1873 Coxiella burnetii RSA 331 hypothetical protein YP_001597510.1 1707308 R 360115 CDS YP_001597511.1 161830644 5793156 1707776..1709197 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1709197 5793156 COXBURSA331_A1874 Coxiella burnetii RSA 331 hypothetical protein YP_001597511.1 1707776 D 360115 CDS YP_001597512.1 161831335 5793966 1709219..1711540 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1711540 5793966 COXBURSA331_A1875 Coxiella burnetii RSA 331 hypothetical protein YP_001597512.1 1709219 D 360115 CDS YP_001597513.1 161831245 5793047 complement(1714054..1714620) 1 NC_010117.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1714620 dcd 5793047 dcd Coxiella burnetii RSA 331 deoxycytidine triphosphate deaminase YP_001597513.1 1714054 R 360115 CDS YP_001597514.1 161831142 5792812 complement(1714620..1715540) 1 NC_010117.1 NifH/FrxC domain-containing protein 1715540 5792812 COXBURSA331_A1878 Coxiella burnetii RSA 331 NifH/FrxC domain-containing protein YP_001597514.1 1714620 R 360115 CDS YP_001597515.1 161830382 5793131 complement(1715974..1716300) 1 NC_010117.1 identified by match to protein family HMM PF01381; DNA-binding protein 1716300 5793131 COXBURSA331_A1879 Coxiella burnetii RSA 331 DNA-binding protein YP_001597515.1 1715974 R 360115 CDS YP_001597516.1 161829715 5793199 complement(1716293..1716463) 1 NC_010117.1 identified by match to protein family HMM PF05973; phage derived protein 1716463 5793199 COXBURSA331_A1880 Coxiella burnetii RSA 331 phage derived protein YP_001597516.1 1716293 R 360115 CDS YP_001597517.1 161830911 5793259 complement(1716658..1718004) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1718004 5793259 COXBURSA331_A1881 Coxiella burnetii RSA 331 hypothetical protein YP_001597517.1 1716658 R 360115 CDS YP_001597518.1 161830377 5794338 complement(1718067..1718426) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1718426 5794338 COXBURSA331_A1882 Coxiella burnetii RSA 331 hypothetical protein YP_001597518.1 1718067 R 360115 CDS YP_001597519.1 161830148 5793764 1718645..1720285 1 NC_010117.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1720285 metG 5793764 metG Coxiella burnetii RSA 331 methionyl-tRNA synthetase YP_001597519.1 1718645 D 360115 CDS YP_001597520.1 161830706 5794873 1720278..1720919 1 NC_010117.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04060; match to protein family HMM TIGR01944; RnfABCDGE type electron transport complex subunit B 1720919 5794873 COXBURSA331_A1884 Coxiella burnetii RSA 331 RnfABCDGE type electron transport complex subunit B YP_001597520.1 1720278 D 360115 CDS YP_001597521.1 161830587 5794055 1720906..1721562 1 NC_010117.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 1721562 nth 5794055 nth Coxiella burnetii RSA 331 endonuclease III YP_001597521.1 1720906 D 360115 CDS YP_001597522.1 161830991 5792738 complement(1721537..1722733) 1 NC_010117.1 hypothetical protein 1722733 5792738 COXBURSA331_A1885 Coxiella burnetii RSA 331 hypothetical protein YP_001597522.1 1721537 R 360115 CDS YP_001597523.1 161830500 5792885 complement(1722800..1724356) 1 NC_010117.1 identified by similarity to GB:CAH17132.1; hypothetical protein 1724356 5792885 COXBURSA331_A1887 Coxiella burnetii RSA 331 hypothetical protein YP_001597523.1 1722800 R 360115 CDS YP_001597524.1 161830774 5794125 1725179..1726042 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1726042 5794125 COXBURSA331_A1889 Coxiella burnetii RSA 331 hypothetical protein YP_001597524.1 1725179 D 360115 CDS YP_001597525.1 161830347 5793441 complement(1726117..1726251) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1726251 5793441 COXBURSA331_A1890 Coxiella burnetii RSA 331 hypothetical protein YP_001597525.1 1726117 R 360115 CDS YP_001597526.1 161829762 5792777 1726340..1727386 1 NC_010117.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1727386 pyrC 5792777 pyrC Coxiella burnetii RSA 331 dihydroorotase YP_001597526.1 1726340 D 360115 CDS YP_001597527.1 161831013 5793037 complement(1728044..1728388) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1728388 5793037 COXBURSA331_A1893 Coxiella burnetii RSA 331 hypothetical protein YP_001597527.1 1728044 R 360115 CDS YP_001597528.1 161831417 5792989 complement(1728491..1729093) 1 NC_010117.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; anti-oxidant AhpCTSA family protein 1729093 5792989 COXBURSA331_A1894 Coxiella burnetii RSA 331 anti-oxidant AhpCTSA family protein YP_001597528.1 1728491 R 360115 CDS YP_001597529.1 161830141 5792745 1729310..1729891 1 NC_010117.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase 1729891 sodB 5792745 sodB Coxiella burnetii RSA 331 superoxide dismutase YP_001597529.1 1729310 D 360115 CDS YP_001597530.1 161830609 5794543 1729893..1730612 1 NC_010117.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1730612 dapB 5794543 dapB Coxiella burnetii RSA 331 dihydrodipicolinate reductase YP_001597530.1 1729893 D 360115 CDS YP_001597531.1 161830102 5793388 1730615..1731052 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1731052 5793388 COXBURSA331_A1897 Coxiella burnetii RSA 331 hypothetical protein YP_001597531.1 1730615 D 360115 CDS YP_001597532.1 161830657 5793107 1731211..1731399 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1731399 5793107 COXBURSA331_A1898 Coxiella burnetii RSA 331 hypothetical protein YP_001597532.1 1731211 D 360115 CDS YP_001597533.1 161831185 5793826 1731416..1731706 1 NC_010117.1 identified by match to protein family HMM PF01541; GIY-YIG catalytic domain-containing protein 1731706 5793826 COXBURSA331_A1899 Coxiella burnetii RSA 331 GIY-YIG catalytic domain-containing protein YP_001597533.1 1731416 D 360115 CDS YP_001597534.1 161829852 5794063 1731687..1731905 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1731905 5794063 COXBURSA331_A1901 Coxiella burnetii RSA 331 hypothetical protein YP_001597534.1 1731687 D 360115 CDS YP_001597535.1 161829788 5793161 complement(1731803..1733278) 1 NC_010117.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 1733278 gcvPB 5793161 gcvPB Coxiella burnetii RSA 331 glycine dehydrogenase subunit 2 YP_001597535.1 1731803 R 360115 CDS YP_001597536.1 161830330 5792788 complement(1733346..1734686) 1 NC_010117.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 1734686 gcvPA 5792788 gcvPA Coxiella burnetii RSA 331 glycine dehydrogenase subunit 1 YP_001597536.1 1733346 R 360115 CDS YP_001597537.1 161830863 5794362 complement(1734689..1735081) 1 NC_010117.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 1735081 gcvH 5794362 gcvH Coxiella burnetii RSA 331 glycine cleavage system protein H YP_001597537.1 1734689 R 360115 CDS YP_001597538.1 161829873 5794064 complement(1735092..1736243) 1 NC_010117.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 1736243 gcvT 5794064 gcvT Coxiella burnetii RSA 331 glycine cleavage system aminomethyltransferase T YP_001597538.1 1735092 R 360115 CDS YP_001597539.1 161831583 5793411 complement(1737348..1737620) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1737620 5793411 COXBURSA331_A1905 Coxiella burnetii RSA 331 hypothetical protein YP_001597539.1 1737348 R 360115 CDS YP_001597540.1 161830458 5794084 complement(1737656..1737736) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1737736 5794084 COXBURSA331_A1907 Coxiella burnetii RSA 331 hypothetical protein YP_001597540.1 1737656 R 360115 CDS YP_001597541.1 161830449 5794230 complement(1737740..1739398) 1 NC_010117.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 1739398 groEL 5794230 groEL Coxiella burnetii RSA 331 chaperonin GroEL YP_001597541.1 1737740 R 360115 CDS YP_001597542.1 161831078 5793118 complement(1739426..1739716) 1 NC_010117.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1739716 groES 5793118 groES Coxiella burnetii RSA 331 co-chaperonin GroES YP_001597542.1 1739426 R 360115 CDS YP_001597543.1 161831297 5794516 1739918..1742590 1 NC_010117.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1742590 acnA 5794516 acnA Coxiella burnetii RSA 331 aconitate hydratase YP_001597543.1 1739918 D 360115 CDS YP_001597544.1 161829877 5793082 1742601..1743311 1 NC_010117.1 hypothetical protein 1743311 5793082 COXBURSA331_A1911 Coxiella burnetii RSA 331 hypothetical protein YP_001597544.1 1742601 D 360115 CDS YP_001597545.1 161831170 5793913 complement(1743327..1745126) 1 NC_010117.1 identified by match to protein family HMM PF00441; match to protein family HMM PF00501; AMP-binding domain-containing protein 1745126 5793913 COXBURSA331_A1912 Coxiella burnetii RSA 331 AMP-binding domain-containing protein YP_001597545.1 1743327 R 360115 CDS YP_001597546.1 161831572 5793219 1745208..1746677 1 NC_010117.1 identified by match to protein family HMM PF00085; thiol:disulfide interchange protein DsbD 1746677 dsbD 5793219 dsbD Coxiella burnetii RSA 331 thiol:disulfide interchange protein DsbD YP_001597546.1 1745208 D 360115 CDS YP_001597547.1 161830048 5794275 complement(1749361..1749492) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1749492 5794275 COXBURSA331_A1916 Coxiella burnetii RSA 331 hypothetical protein YP_001597547.1 1749361 R 360115 CDS YP_001597548.1 161830703 5792933 1749520..1749984 1 NC_010117.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1749984 accB 5792933 accB Coxiella burnetii RSA 331 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_001597548.1 1749520 D 360115 CDS YP_001597549.1 161830399 5792765 1749991..1751337 1 NC_010117.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514; acetyl-CoA carboxylase, biotin carboxylase 1751337 accC 5792765 accC Coxiella burnetii RSA 331 acetyl-CoA carboxylase, biotin carboxylase YP_001597549.1 1749991 D 360115 CDS YP_001597550.1 161829939 5792963 complement(1751389..1752399) 1 NC_010117.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 1752399 arcB 5792963 arcB Coxiella burnetii RSA 331 ornithine cyclodeaminase YP_001597550.1 1751389 R 360115 CDS YP_001597551.1 161831219 5794127 complement(1752392..1753009) 1 NC_010117.1 identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528; nicotinamide mononucleotide transporter family protein 1753009 5794127 COXBURSA331_A1920 Coxiella burnetii RSA 331 nicotinamide mononucleotide transporter family protein YP_001597551.1 1752392 R 360115 CDS YP_001597552.1 161830024 5793396 complement(1753044..1753976) 1 NC_010117.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1753976 hemF 5793396 hemF Coxiella burnetii RSA 331 coproporphyrinogen III oxidase YP_001597552.1 1753044 R 360115 CDS YP_001597553.1 161831544 5794390 complement(1754084..1754851) 1 NC_010117.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; HAD family hydrolase 1754851 5794390 COXBURSA331_A1922 Coxiella burnetii RSA 331 HAD family hydrolase YP_001597553.1 1754084 R 360115 CDS YP_001597554.1 161830073 5794242 1756280..1757446 1 NC_010117.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase family protein 1757446 5794242 COXBURSA331_A1924 Coxiella burnetii RSA 331 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_001597554.1 1756280 D 360115 CDS YP_001597555.1 161830954 5793669 complement(1759590..1760303) 1 NC_010117.1 identified by match to protein family HMM PF00308; match to protein family HMM TIGR03420; DnaA-like protein Hda 1760303 hda 5793669 hda Coxiella burnetii RSA 331 DnaA-like protein Hda YP_001597555.1 1759590 R 360115 CDS YP_001597556.1 161830504 5794193 complement(1760306..1761430) 1 NC_010117.1 hypothetical protein 1761430 5794193 COXBURSA331_A1927 Coxiella burnetii RSA 331 hypothetical protein YP_001597556.1 1760306 R 360115 CDS YP_001597557.1 161830188 5793030 1761512..1762570 1 NC_010117.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1762570 purM 5793030 purM Coxiella burnetii RSA 331 phosphoribosylaminoimidazole synthetase YP_001597557.1 1761512 D 360115 CDS YP_001597558.1 161831063 5793356 1762567..1763214 1 NC_010117.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 1763214 purN 5793356 purN Coxiella burnetii RSA 331 phosphoribosylglycinamide formyltransferase YP_001597558.1 1762567 D 360115 CDS YP_001597559.1 161830808 5794237 1763300..1763638 1 NC_010117.1 identified by match to protein family HMM PF00216; match to protein family HMM TIGR00988; integration host factor subunit beta 1763638 ihfB 5794237 ihfB Coxiella burnetii RSA 331 integration host factor subunit beta YP_001597559.1 1763300 D 360115 CDS YP_001597560.1 161830627 5793648 complement(1763604..1764461) 1 NC_010117.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 1764461 5793648 COXBURSA331_A1930 Coxiella burnetii RSA 331 hypothetical protein YP_001597560.1 1763604 R 360115 CDS YP_001597561.1 161831195 5793895 complement(1764512..1764655) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1764655 5793895 COXBURSA331_A1932 Coxiella burnetii RSA 331 hypothetical protein YP_001597561.1 1764512 R 360115 CDS YP_001597562.1 161831553 5794182 1764730..1765914 1 NC_010117.1 putative lipoprotein 1765914 5794182 COXBURSA331_A1933 Coxiella burnetii RSA 331 putative lipoprotein YP_001597562.1 1764730 D 360115 CDS YP_001597563.1 161830032 5794495 1765964..1766326 1 NC_010117.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 1766326 5794495 COXBURSA331_A1934 Coxiella burnetii RSA 331 hypothetical protein YP_001597563.1 1765964 D 360115 CDS YP_001597564.1 161829935 5793627 1766332..1766931 1 NC_010117.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 1766931 gmhA 5793627 gmhA Coxiella burnetii RSA 331 phosphoheptose isomerase YP_001597564.1 1766332 D 360115 CDS YP_001597565.1 161830323 5793010 1766931..1767506 1 NC_010117.1 identified by match to protein family HMM PF04972; putative phospholipid-binding liporotein 1767506 5793010 COXBURSA331_A1936 Coxiella burnetii RSA 331 putative phospholipid-binding liporotein YP_001597565.1 1766931 D 360115 CDS YP_001597566.1 161830745 5794268 complement(1767916..1768608) 1 NC_010117.1 identified by match to protein family HMM PF02163; peptidase, M50 family protein 1768608 5794268 COXBURSA331_A1937 Coxiella burnetii RSA 331 peptidase, M50 family protein YP_001597566.1 1767916 R 360115 CDS YP_001597567.1 161831171 5792814 complement(1768696..1769112) 1 NC_010117.1 identified by match to protein family HMM PF04386; ClpXP protease specificity-enhancing factor 1769112 sspB 5792814 sspB Coxiella burnetii RSA 331 ClpXP protease specificity-enhancing factor YP_001597567.1 1768696 R 360115 CDS YP_001597568.1 161829787 5793282 complement(1769102..1769731) 1 NC_010117.1 identified by match to protein family HMM PF02798; stringent starvation protein A 1769731 sspA 5793282 sspA Coxiella burnetii RSA 331 stringent starvation protein A YP_001597568.1 1769102 R 360115 CDS YP_001597569.1 161830339 5792830 complement(1769795..1770214) 1 NC_010117.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1770214 rpsI 5792830 rpsI Coxiella burnetii RSA 331 30S ribosomal protein S9 YP_001597569.1 1769795 R 360115 CDS YP_001597570.1 161831137 5793294 complement(1770233..1770661) 1 NC_010117.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1770661 rplM 5793294 rplM Coxiella burnetii RSA 331 50S ribosomal protein L13 YP_001597570.1 1770233 R 360115 CDS YP_001597571.1 161831556 5794208 1770660..1770809 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1770809 5794208 COXBURSA331_A1942 Coxiella burnetii RSA 331 hypothetical protein YP_001597571.1 1770660 D 360115 CDS YP_001597572.1 161830256 5792932 1770891..1771340 1 NC_010117.1 identified by match to protein family HMM PF00216; DNA-binding protein BpH2 1771340 bph2_2 5792932 bph2_2 Coxiella burnetii RSA 331 DNA-binding protein BpH2 YP_001597572.1 1770891 D 360115 CDS YP_001597573.1 161831575 5794375 1771448..1772710 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1772710 5794375 COXBURSA331_A1944 Coxiella burnetii RSA 331 hypothetical protein YP_001597573.1 1771448 D 360115 CDS YP_001597574.1 161830033 5793289 1772746..1773984 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1773984 5793289 COXBURSA331_A1945 Coxiella burnetii RSA 331 hypothetical protein YP_001597574.1 1772746 D 360115 CDS YP_001597575.1 161830411 5793453 1774058..1774474 1 NC_010117.1 hypothetical protein 1774474 5793453 COXBURSA331_A1946 Coxiella burnetii RSA 331 hypothetical protein YP_001597575.1 1774058 D 360115 CDS YP_001597576.1 161830480 5792838 complement(1774496..1775092) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1775092 5792838 COXBURSA331_A1947 Coxiella burnetii RSA 331 hypothetical protein YP_001597576.1 1774496 R 360115 CDS YP_001597577.1 161830605 5794249 1775274..1776455 1 NC_010117.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; Bcr/CflA subfamily drug resistance transporter 1776455 5794249 COXBURSA331_A1948 Coxiella burnetii RSA 331 Bcr/CflA subfamily drug resistance transporter YP_001597577.1 1775274 D 360115 CDS YP_001597578.1 161830702 5794166 complement(1776470..1778305) 1 NC_010117.1 identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 1778305 5794166 COXBURSA331_A1949 Coxiella burnetii RSA 331 ankyrin repeat-containing protein YP_001597578.1 1776470 R 360115 CDS YP_001597579.1 161831068 5793269 complement(1778403..1779023) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1779023 5793269 COXBURSA331_A1950 Coxiella burnetii RSA 331 hypothetical protein YP_001597579.1 1778403 R 360115 CDS YP_001597580.1 161831127 5794813 complement(1779063..1779191) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1779191 5794813 COXBURSA331_A1951 Coxiella burnetii RSA 331 hypothetical protein YP_001597580.1 1779063 R 360115 CDS YP_001597581.1 161831546 5793702 1779190..1780209 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1780209 5793702 COXBURSA331_A1952 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597581.1 1779190 D 360115 CDS YP_001597582.1 161830826 5794019 complement(1780235..1780477) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1780477 5794019 COXBURSA331_A1953 Coxiella burnetii RSA 331 hypothetical protein YP_001597582.1 1780235 R 360115 CDS YP_001597583.1 161830457 5793662 complement(1780803..1782776) 1 NC_010117.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229; PAS/histidine kinase/ATPase domain-containing protein 1782776 5793662 COXBURSA331_A1954 Coxiella burnetii RSA 331 PAS/histidine kinase/ATPase domain-containing protein YP_001597583.1 1780803 R 360115 CDS YP_001597584.1 161830924 5793950 complement(1782830..1784212) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1784212 5793950 COXBURSA331_A1955 Coxiella burnetii RSA 331 hypothetical protein YP_001597584.1 1782830 R 360115 CDS YP_001597585.1 161831336 5794788 1784376..1785704 1 NC_010117.1 hypothetical protein 1785704 5794788 COXBURSA331_A1956 Coxiella burnetii RSA 331 hypothetical protein YP_001597585.1 1784376 D 360115 CDS YP_001597586.1 161829783 5793078 complement(1786105..1786269) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1786269 5793078 COXBURSA331_A1957 Coxiella burnetii RSA 331 hypothetical protein YP_001597586.1 1786105 R 360115 CDS YP_001597587.1 161830239 5793741 complement(1786316..1786534) 1 NC_010117.1 hypothetical protein 1786534 5793741 COXBURSA331_A1958 Coxiella burnetii RSA 331 hypothetical protein YP_001597587.1 1786316 R 360115 CDS YP_001597588.1 161829845 5794347 complement(1786534..1788984) 1 NC_010117.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B 1788984 feoB 5794347 feoB Coxiella burnetii RSA 331 ferrous iron transport protein B YP_001597588.1 1786534 R 360115 CDS YP_001597589.1 161830600 5793599 complement(1788985..1789221) 1 NC_010117.1 identified by match to protein family HMM PF04023; ferrous iron transport protein A 1789221 feoA 5793599 feoA Coxiella burnetii RSA 331 ferrous iron transport protein A YP_001597589.1 1788985 R 360115 CDS YP_001597590.1 161830888 5793359 complement(1789316..1789597) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1789597 5793359 COXBURSA331_A1961 Coxiella burnetii RSA 331 hypothetical protein YP_001597590.1 1789316 R 360115 CDS YP_001597591.1 161831309 5794853 complement(1789844..1790461) 1 NC_010117.1 hypothetical protein 1790461 5794853 COXBURSA331_A1962 Coxiella burnetii RSA 331 hypothetical protein YP_001597591.1 1789844 R 360115 CDS YP_001597592.1 161830178 5793729 1790566..1790838 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1790838 5793729 COXBURSA331_A1964 Coxiella burnetii RSA 331 hypothetical protein YP_001597592.1 1790566 D 360115 CDS YP_001597593.1 161831444 5793093 complement(1790835..1791854) 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1791854 5793093 COXBURSA331_A1963 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597593.1 1790835 R 360115 CDS YP_001597594.1 161831555 5794154 1791853..1791975 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1791975 5794154 COXBURSA331_A1966 Coxiella burnetii RSA 331 hypothetical protein YP_001597594.1 1791853 D 360115 CDS YP_001597595.1 161831147 5792919 complement(1791939..1793243) 1 NC_010117.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1793243 5792919 COXBURSA331_A1965 Coxiella burnetii RSA 331 ABC transporter ATP-binding protein YP_001597595.1 1791939 R 360115 CDS YP_001597596.1 161829804 5793084 complement(1793353..1795098) 1 NC_010117.1 identified by match to protein family HMM PF00528; ABC transporter permease 1795098 5793084 COXBURSA331_A1967 Coxiella burnetii RSA 331 ABC transporter permease YP_001597596.1 1793353 R 360115 CDS YP_001597597.1 161830201 5793091 complement(1795333..1795950) 1 NC_010117.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1795950 engB 5793091 engB Coxiella burnetii RSA 331 ribosome biogenesis GTP-binding protein YsxC YP_001597597.1 1795333 R 360115 CDS YP_001597598.1 161829972 5793175 1796092..1796223 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1796223 5793175 COXBURSA331_A1969 Coxiella burnetii RSA 331 hypothetical protein YP_001597598.1 1796092 D 360115 CDS YP_001597599.1 161830344 5794507 1796220..1796603 1 NC_010117.1 identified by match to protein family HMM PF08238; Sel1 repeat-containing protein 1796603 5794507 COXBURSA331_A1970 Coxiella burnetii RSA 331 Sel1 repeat-containing protein YP_001597599.1 1796220 D 360115 CDS YP_001597600.1 161830335 5794008 1796774..1797094 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1797094 5794008 COXBURSA331_A1971 Coxiella burnetii RSA 331 hypothetical protein YP_001597600.1 1796774 D 360115 CDS YP_001597601.1 161831616 5793979 complement(1797706..1797891) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1797891 5793979 COXBURSA331_A1973 Coxiella burnetii RSA 331 hypothetical protein YP_001597601.1 1797706 R 360115 CDS YP_001597602.1 161831104 5794527 complement(1797951..1799042) 1 NC_010117.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 1799042 fba 5794527 fba Coxiella burnetii RSA 331 fructose-1,6-bisphosphate aldolase YP_001597602.1 1797951 R 360115 CDS YP_001597603.1 161831518 5794050 1799212..1800231 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1800231 5794050 COXBURSA331_A1976 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597603.1 1799212 D 360115 CDS YP_001597604.1 161830116 5793694 complement(1800228..1800500) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1800500 5793694 COXBURSA331_A1975 Coxiella burnetii RSA 331 hypothetical protein YP_001597604.1 1800228 R 360115 CDS YP_001597605.1 161830982 5793417 1800791..1801828 1 NC_010117.1 identified by similarity to RF:XP_001242764.1; hypothetical protein 1801828 5793417 COXBURSA331_A1977 Coxiella burnetii RSA 331 hypothetical protein YP_001597605.1 1800791 D 360115 CDS YP_001597606.1 161830502 5793399 complement(1802245..1803699) 1 NC_010117.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 1803699 pyk 5793399 pyk Coxiella burnetii RSA 331 pyruvate kinase YP_001597606.1 1802245 R 360115 CDS YP_001597607.1 161830171 5793178 complement(1803686..1804885) 1 NC_010117.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1804885 pgk 5793178 pgk Coxiella burnetii RSA 331 phosphoglycerate kinase YP_001597607.1 1803686 R 360115 CDS YP_001597608.1 161830061 5793168 complement(1804972..1805976) 1 NC_010117.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase, type I 1805976 gap 5793168 gap Coxiella burnetii RSA 331 glyceraldehyde 3-phosphate dehydrogenase, type I YP_001597608.1 1804972 R 360115 CDS YP_001597609.1 161830562 5793183 complement(1805991..1807985) 1 NC_010117.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1807985 tkt 5793183 tkt Coxiella burnetii RSA 331 transketolase YP_001597609.1 1805991 R 360115 CDS YP_001597610.1 161829904 5794842 1808208..1809227 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1809227 5794842 COXBURSA331_A1983 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597610.1 1808208 D 360115 CDS YP_001597611.1 161830953 5792768 complement(1809224..1809496) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1809496 5792768 COXBURSA331_A1982 Coxiella burnetii RSA 331 hypothetical protein YP_001597611.1 1809224 R 360115 CDS YP_001597612.1 161829912 5793364 complement(1809569..1810702) 1 NC_010117.1 hypothetical protein 1810702 5793364 COXBURSA331_A1984 Coxiella burnetii RSA 331 hypothetical protein YP_001597612.1 1809569 R 360115 CDS YP_001597613.1 161830342 5794308 1810808..1812643 1 NC_010117.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135; glutamine-fructose-6-phosphate transaminase (isomerizing) 1812643 glmS 5794308 glmS Coxiella burnetii RSA 331 glutamine-fructose-6-phosphate transaminase (isomerizing) YP_001597613.1 1810808 D 360115 CDS YP_001597614.1 161830809 5793770 1812646..1813230 1 NC_010117.1 hypothetical protein 1813230 5793770 COXBURSA331_A1986 Coxiella burnetii RSA 331 hypothetical protein YP_001597614.1 1812646 D 360115 CDS YP_001597615.1 161831226 5793528 complement(1813619..1814485) 1 NC_010117.1 identified by match to protein family HMM PF08450; SMP-30/CGR1 family protein 1814485 5793528 COXBURSA331_A1987 Coxiella burnetii RSA 331 SMP-30/CGR1 family protein YP_001597615.1 1813619 R 360115 CDS YP_001597616.1 161830526 5793846 1817763..1817879 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1817879 5793846 COXBURSA331_A1990 Coxiella burnetii RSA 331 hypothetical protein YP_001597616.1 1817763 D 360115 CDS YP_001597617.1 161831592 5792790 1817966..1818703 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1818703 5792790 COXBURSA331_A1991 Coxiella burnetii RSA 331 hypothetical protein YP_001597617.1 1817966 D 360115 CDS YP_001597618.1 161831073 5793610 complement(1818733..1821441) 1 NC_010117.1 identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I 1821441 polA 5793610 polA Coxiella burnetii RSA 331 DNA polymerase I YP_001597618.1 1818733 R 360115 CDS YP_001597619.1 161830746 5793896 1821492..1823120 1 NC_010117.1 identified by match to protein family HMM PF00324; amino acid permease family protein 1823120 5793896 COXBURSA331_A1993 Coxiella burnetii RSA 331 amino acid permease family protein YP_001597619.1 1821492 D 360115 CDS YP_001597620.1 161830222 5793448 1823125..1823565 1 NC_010117.1 identified by match to protein family HMM PF03061; thioesterase family protein 1823565 5793448 COXBURSA331_A1994 Coxiella burnetii RSA 331 thioesterase family protein YP_001597620.1 1823125 D 360115 CDS YP_001597621.1 161830682 5792934 1823694..1825637 1 NC_010117.1 hypothetical protein 1825637 5792934 COXBURSA331_A1995 Coxiella burnetii RSA 331 hypothetical protein YP_001597621.1 1823694 D 360115 CDS YP_001597622.1 161830673 5794655 1825710..1826168 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1826168 5794655 COXBURSA331_A1997 Coxiella burnetii RSA 331 hypothetical protein YP_001597622.1 1825710 D 360115 CDS YP_001597623.1 161830688 5793340 complement(1826019..1826480) 1 NC_010117.1 identified by match to protein family HMM PF00583; acetyltransferase 1826480 5793340 COXBURSA331_A1996 Coxiella burnetii RSA 331 acetyltransferase YP_001597623.1 1826019 R 360115 CDS YP_001597624.1 161831246 5793000 complement(1826477..1827235) 1 NC_010117.1 identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein 1827235 5793000 COXBURSA331_A1998 Coxiella burnetii RSA 331 hypothetical protein YP_001597624.1 1826477 R 360115 CDS YP_001597625.1 161830084 5793328 complement(1827244..1827531) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1827531 5793328 COXBURSA331_A1999 Coxiella burnetii RSA 331 hypothetical protein YP_001597625.1 1827244 R 360115 CDS YP_001597626.1 161830638 5792723 complement(1827564..1828202) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1828202 5792723 COXBURSA331_A2000 Coxiella burnetii RSA 331 hypothetical protein YP_001597626.1 1827564 R 360115 CDS YP_001597627.1 161830977 5794847 1828401..1828520 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1828520 5794847 COXBURSA331_A2001 Coxiella burnetii RSA 331 hypothetical protein YP_001597627.1 1828401 D 360115 CDS YP_001597628.1 161829885 5793996 1828539..1828793 1 NC_010117.1 identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 1828793 5793996 COXBURSA331_A2002 Coxiella burnetii RSA 331 LuxR family transcriptional regulator YP_001597628.1 1828539 D 360115 CDS YP_001597629.1 161830316 5793889 1828807..1829190 1 NC_010117.1 identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 1829190 5793889 COXBURSA331_A2003 Coxiella burnetii RSA 331 LuxR family transcriptional regulator YP_001597629.1 1828807 D 360115 CDS YP_001597630.1 161830764 5794790 complement(1829266..1829553) 1 NC_010117.1 hypothetical protein 1829553 5794790 COXBURSA331_A2004 Coxiella burnetii RSA 331 hypothetical protein YP_001597630.1 1829266 R 360115 CDS YP_001597631.1 161831179 5793733 1829905..1830141 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1830141 5793733 COXBURSA331_A2005 Coxiella burnetii RSA 331 hypothetical protein YP_001597631.1 1829905 D 360115 CDS YP_001597632.1 161831430 5794152 complement(1830260..1830469) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1830469 5794152 COXBURSA331_A2006 Coxiella burnetii RSA 331 hypothetical protein YP_001597632.1 1830260 R 360115 CDS YP_001597633.1 161829722 5794199 complement(1832536..1833711) 1 NC_010117.1 ABC transporter substrate-binding protein 1833711 5794199 COXBURSA331_A2009 Coxiella burnetii RSA 331 ABC transporter substrate-binding protein YP_001597633.1 1832536 R 360115 CDS YP_001597634.1 161830311 5794803 complement(1833714..1835243) 1 NC_010117.1 identified by match to protein family HMM PF02321; outer membrane efflux family protein 1835243 5794803 COXBURSA331_A2010 Coxiella burnetii RSA 331 outer membrane efflux family protein YP_001597634.1 1833714 R 360115 CDS YP_001597635.1 161830853 5792806 1835337..1836437 1 NC_010117.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; erythronate-4-phosphate dehydrogenase 1836437 pdxB 5792806 pdxB Coxiella burnetii RSA 331 erythronate-4-phosphate dehydrogenase YP_001597635.1 1835337 D 360115 CDS YP_001597636.1 161831355 5794109 1836418..1836546 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1836546 5794109 COXBURSA331_A2012 Coxiella burnetii RSA 331 hypothetical protein YP_001597636.1 1836418 D 360115 CDS YP_001597637.1 161829977 5793912 1836583..1837296 1 NC_010117.1 hypothetical protein 1837296 5793912 COXBURSA331_A2013 Coxiella burnetii RSA 331 hypothetical protein YP_001597637.1 1836583 D 360115 CDS YP_001597638.1 161830570 5793064 complement(1837444..1839432) 1 NC_010117.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00595; primosomal protein N' 1839432 priA 5793064 priA Coxiella burnetii RSA 331 primosomal protein N' YP_001597638.1 1837444 R 360115 CDS YP_001597639.1 161831116 5793838 1839504..1840070 1 NC_010117.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1840070 efp 5793838 efp Coxiella burnetii RSA 331 elongation factor P YP_001597639.1 1839504 D 360115 CDS YP_001597640.1 161830704 5793989 1840075..1841040 1 NC_010117.1 identified by match to protein family HMM PF00152; match to protein family HMM TIGR00462; lysyl-tRNA synthetase-like protein GenX 1841040 5793989 COXBURSA331_A2016 Coxiella burnetii RSA 331 lysyl-tRNA synthetase-like protein GenX YP_001597640.1 1840075 D 360115 CDS YP_001597641.1 161830714 5793959 1841564..1842703 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1842703 5793959 COXBURSA331_A2017 Coxiella burnetii RSA 331 hypothetical protein YP_001597641.1 1841564 D 360115 CDS YP_001597642.1 161830666 5794393 1842771..1843889 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1843889 5794393 COXBURSA331_A2018 Coxiella burnetii RSA 331 hypothetical protein YP_001597642.1 1842771 D 360115 CDS YP_001597643.1 161831265 5793835 complement(1844433..1844930) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1844930 5793835 COXBURSA331_A2020 Coxiella burnetii RSA 331 hypothetical protein YP_001597643.1 1844433 R 360115 CDS YP_001597644.1 161830901 5794886 complement(1844914..1845039) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1845039 5794886 COXBURSA331_A2021 Coxiella burnetii RSA 331 hypothetical protein YP_001597644.1 1844914 R 360115 CDS YP_001597645.1 161830357 5794262 complement(1845046..1845558) 1 NC_010117.1 identified by match to protein family HMM PF00080; superoxide dismutase (Cu-Zn) 1845558 sodC 5794262 sodC Coxiella burnetii RSA 331 superoxide dismutase (Cu-Zn) YP_001597645.1 1845046 R 360115 CDS YP_001597646.1 161831524 5794075 1845696..1846745 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1846745 5794075 COXBURSA331_A2023 Coxiella burnetii RSA 331 hypothetical protein YP_001597646.1 1845696 D 360115 CDS YP_001597647.1 161830281 5794228 1847047..1847394 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1847394 5794228 COXBURSA331_A2024 Coxiella burnetii RSA 331 hypothetical protein YP_001597647.1 1847047 D 360115 CDS YP_001597648.1 161830960 5792994 complement(1847399..1848247) 1 NC_010117.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 1848247 psd 5792994 psd Coxiella burnetii RSA 331 phosphatidylserine decarboxylase YP_001597648.1 1847399 R 360115 CDS YP_001597649.1 161830664 5792801 1848269..1849399 1 NC_010117.1 identified by match to protein family HMM PF01743; multifunctional CCA protein 1849399 cca 5792801 cca Coxiella burnetii RSA 331 multifunctional CCA protein YP_001597649.1 1848269 D 360115 CDS YP_001597650.1 161830113 5793777 complement(1849433..1850599) 1 NC_010117.1 identified by match to protein family HMM PF02636; hypothetical protein 1850599 5793777 COXBURSA331_A2027 Coxiella burnetii RSA 331 hypothetical protein YP_001597650.1 1849433 R 360115 CDS YP_001597651.1 161831030 5793067 1850693..1851325 1 NC_010117.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1851325 lolB 5793067 lolB Coxiella burnetii RSA 331 outer membrane lipoprotein LolB YP_001597651.1 1850693 D 360115 CDS YP_001597652.1 161830619 5794354 complement(1851395..1851532) 1 NC_010117.1 identified by similarity to GB:ABE04226.1; hypothetical protein 1851532 5794354 COXBURSA331_A2029 Coxiella burnetii RSA 331 hypothetical protein YP_001597652.1 1851395 R 360115 CDS YP_001597653.1 161830151 5794353 1851500..1852459 1 NC_010117.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1852459 prs 5794353 prs Coxiella burnetii RSA 331 ribose-phosphate pyrophosphokinase YP_001597653.1 1851500 D 360115 CDS YP_001597654.1 161829842 5794711 1852464..1853912 1 NC_010117.1 identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase family protein 1853912 5794711 COXBURSA331_A2032 Coxiella burnetii RSA 331 dolichyl-phosphate-mannose-protein mannosyltransferase family protein YP_001597654.1 1852464 D 360115 CDS YP_001597655.1 161831459 5794280 complement(1853790..1855181) 1 NC_010117.1 hypothetical protein 1855181 5794280 COXBURSA331_A2031 Coxiella burnetii RSA 331 hypothetical protein YP_001597655.1 1853790 R 360115 CDS YP_001597656.1 161831012 5794083 complement(1855196..1855312) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1855312 5794083 COXBURSA331_A2033 Coxiella burnetii RSA 331 hypothetical protein YP_001597656.1 1855196 R 360115 CDS YP_001597657.1 161831425 5793961 1855284..1856198 1 NC_010117.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase 1856198 rfbA 5793961 rfbA Coxiella burnetii RSA 331 glucose-1-phosphate thymidylyltransferase YP_001597657.1 1855284 D 360115 CDS YP_001597658.1 161829854 5793137 complement(1856195..1856332) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1856332 5793137 COXBURSA331_A2034 Coxiella burnetii RSA 331 hypothetical protein YP_001597658.1 1856195 R 360115 CDS YP_001597659.1 161830727 5792903 complement(1856544..1857923) 1 NC_010117.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593; amine oxidase, flavin-containing 1857923 5792903 COXBURSA331_A2036 Coxiella burnetii RSA 331 amine oxidase, flavin-containing YP_001597659.1 1856544 R 360115 CDS YP_001597660.1 161830312 5793277 complement(1857925..1859181) 1 NC_010117.1 identified by match to protein family HMM PF03447; homoserine dehydrogenase 1859181 5793277 COXBURSA331_A2037 Coxiella burnetii RSA 331 homoserine dehydrogenase YP_001597660.1 1857925 R 360115 CDS YP_001597661.1 161831213 5792914 complement(1859195..1860229) 1 NC_010117.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase family protein 1860229 5792914 COXBURSA331_A2038 Coxiella burnetii RSA 331 NAD-dependent epimerase/dehydratase family protein YP_001597661.1 1859195 R 360115 CDS YP_001597662.1 161830572 5793722 complement(1860232..1860801) 1 NC_010117.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase 1860801 rfbC 5793722 rfbC Coxiella burnetii RSA 331 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001597662.1 1860232 R 360115 CDS YP_001597663.1 161829817 5793213 complement(1860811..1862037) 1 NC_010117.1 identified by match to protein family HMM PF01266; FAD-dependent oxidoreductase 1862037 5793213 COXBURSA331_A2040 Coxiella burnetii RSA 331 FAD-dependent oxidoreductase YP_001597663.1 1860811 R 360115 CDS YP_001597664.1 161830242 5793144 1862187..1862921 1 NC_010117.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1862921 5793144 COXBURSA331_A2041 Coxiella burnetii RSA 331 50S ribosomal protein L25/general stress protein Ctc YP_001597664.1 1862187 D 360115 CDS YP_001597665.1 161831131 5794096 1862928..1863491 1 NC_010117.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1863491 pth 5794096 pth Coxiella burnetii RSA 331 peptidyl-tRNA hydrolase YP_001597665.1 1862928 D 360115 CDS YP_001597666.1 161831564 5794384 1863536..1864627 1 NC_010117.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1864627 ychF 5794384 ychF Coxiella burnetii RSA 331 GTP-dependent nucleic acid-binding protein EngD YP_001597666.1 1863536 D 360115 CDS YP_001597667.1 161830047 5794522 1864652..1865035 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1865035 5794522 COXBURSA331_A2044 Coxiella burnetii RSA 331 hypothetical protein YP_001597667.1 1864652 D 360115 CDS YP_001597668.1 161830211 5792918 1865834..1866445 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1866445 5792918 COXBURSA331_A2047 Coxiella burnetii RSA 331 hypothetical protein YP_001597668.1 1865834 D 360115 CDS YP_001597669.1 161830889 5793590 complement(1866558..1867091) 1 NC_010117.1 hypothetical protein 1867091 5793590 COXBURSA331_A2048 Coxiella burnetii RSA 331 hypothetical protein YP_001597669.1 1866558 R 360115 CDS YP_001597670.1 161831603 5792744 complement(1867141..1867386) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1867386 5792744 COXBURSA331_A2049 Coxiella burnetii RSA 331 hypothetical protein YP_001597670.1 1867141 R 360115 CDS YP_001597671.1 161831510 5794256 1869237..1869365 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1869365 5794256 COXBURSA331_A2051 Coxiella burnetii RSA 331 hypothetical protein YP_001597671.1 1869237 D 360115 CDS YP_001597672.1 161830677 5794483 complement(1869728..1869856) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1869856 5794483 COXBURSA331_A2053 Coxiella burnetii RSA 331 hypothetical protein YP_001597672.1 1869728 R 360115 CDS YP_001597673.1 161830955 5793237 complement(1869910..1870374) 1 NC_010117.1 hypothetical protein 1870374 5793237 COXBURSA331_A2054 Coxiella burnetii RSA 331 hypothetical protein YP_001597673.1 1869910 R 360115 CDS YP_001597674.1 161830781 5794357 1870610..1872406 1 NC_010117.1 hypothetical protein 1872406 5794357 COXBURSA331_A2055 Coxiella burnetii RSA 331 hypothetical protein YP_001597674.1 1870610 D 360115 CDS YP_001597675.1 161829928 5794366 1872399..1873793 1 NC_010117.1 hypothetical protein 1873793 5794366 COXBURSA331_A2057 Coxiella burnetii RSA 331 hypothetical protein YP_001597675.1 1872399 D 360115 CDS YP_001597676.1 161831232 5794894 complement(1873771..1874220) 1 NC_010117.1 identified by match to protein family HMM PF04138; GtrA family protein 1874220 5794894 COXBURSA331_A2056 Coxiella burnetii RSA 331 GtrA family protein YP_001597676.1 1873771 R 360115 CDS YP_001597677.1 161830352 5793864 complement(1874303..1874581) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1874581 5793864 COXBURSA331_A2058 Coxiella burnetii RSA 331 hypothetical protein YP_001597677.1 1874303 R 360115 CDS YP_001597678.1 161830896 5793972 complement(1875003..1875344) 1 NC_010117.1 hypothetical protein 1875344 5793972 COXBURSA331_A2059 Coxiella burnetii RSA 331 hypothetical protein YP_001597678.1 1875003 R 360115 CDS YP_001597679.1 161830196 5793205 complement(1875377..1876447) 1 NC_010117.1 identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein 1876447 5793205 COXBURSA331_A2060 Coxiella burnetii RSA 331 enoyl-CoA hydratase/isomerase family protein YP_001597679.1 1875377 R 360115 CDS YP_001597680.1 161829856 5792937 complement(1878252..1879649) 1 NC_010117.1 identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 1879649 5792937 COXBURSA331_A2062 Coxiella burnetii RSA 331 oligopeptide ABC transporter permease YP_001597680.1 1878252 R 360115 CDS YP_001597681.1 161831497 5793020 complement(1879660..1880670) 1 NC_010117.1 identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 1880670 5793020 COXBURSA331_A2063 Coxiella burnetii RSA 331 oligopeptide ABC transporter permease YP_001597681.1 1879660 R 360115 CDS YP_001597682.1 161831507 5794078 1882962..1883990 1 NC_010117.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238; KamA family protein 1883990 5794078 COXBURSA331_A2067 Coxiella burnetii RSA 331 KamA family protein YP_001597682.1 1882962 D 360115 CDS YP_001597683.1 161830750 5793904 complement(1883980..1885791) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1885791 5793904 COXBURSA331_A2066 Coxiella burnetii RSA 331 hypothetical protein YP_001597683.1 1883980 R 360115 CDS YP_001597684.1 161831108 5792902 complement(1886170..1886697) 1 NC_010117.1 identified by match to protein family HMM PF03703; hypothetical protein 1886697 5792902 COXBURSA331_A2068 Coxiella burnetii RSA 331 hypothetical protein YP_001597684.1 1886170 R 360115 CDS YP_001597685.1 161830937 5793261 complement(1886715..1888970) 1 NC_010117.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1888970 parC 5793261 parC Coxiella burnetii RSA 331 DNA topoisomerase IV subunit A YP_001597685.1 1886715 R 360115 CDS YP_001597686.1 161830650 5794363 1889089..1889202 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1889202 5794363 COXBURSA331_A2070 Coxiella burnetii RSA 331 hypothetical protein YP_001597686.1 1889089 D 360115 CDS YP_001597687.1 161830147 5793490 1889549..1890202 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1890202 5793490 COXBURSA331_A2072 Coxiella burnetii RSA 331 hypothetical protein YP_001597687.1 1889549 D 360115 CDS YP_001597688.1 161831606 5793124 complement(1890195..1890320) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1890320 5793124 COXBURSA331_A2071 Coxiella burnetii RSA 331 hypothetical protein YP_001597688.1 1890195 R 360115 CDS YP_001597689.1 161830693 5793420 1890489..1891136 1 NC_010117.1 hypothetical protein 1891136 5793420 COXBURSA331_A2073 Coxiella burnetii RSA 331 hypothetical protein YP_001597689.1 1890489 D 360115 CDS YP_001597690.1 161830694 5793861 complement(1891672..1892340) 1 NC_010117.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 1892340 rpe 5793861 rpe Coxiella burnetii RSA 331 ribulose-phosphate 3-epimerase YP_001597690.1 1891672 R 360115 CDS YP_001597691.1 161831329 5793917 complement(1892367..1893179) 1 NC_010117.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 1893179 djlA 5793917 djlA Coxiella burnetii RSA 331 Dna-J like membrane chaperone protein YP_001597691.1 1892367 R 360115 CDS YP_001597692.1 161829943 5794823 1893218..1894525 1 NC_010117.1 identified by match to protein family HMM PF08886; match to protein family HMM TIGR02049; glutamate--cysteine ligase 1894525 gshA 5794823 gshA Coxiella burnetii RSA 331 glutamate--cysteine ligase YP_001597692.1 1893218 D 360115 CDS YP_001597693.1 161829923 5792773 1894579..1895544 1 NC_010117.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 1895544 gshB 5792773 gshB Coxiella burnetii RSA 331 glutathione synthetase YP_001597693.1 1894579 D 360115 CDS YP_001597694.1 161830346 5793032 complement(1895528..1895833) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1895833 5793032 COXBURSA331_A2077 Coxiella burnetii RSA 331 hypothetical protein YP_001597694.1 1895528 R 360115 CDS YP_001597695.1 161830156 5794348 1895950..1896714 1 NC_010117.1 identified by match to protein family HMM PF04445; hypothetical protein 1896714 5794348 COXBURSA331_A2080 Coxiella burnetii RSA 331 hypothetical protein YP_001597695.1 1895950 D 360115 CDS YP_001597696.1 161830230 5794224 complement(1896697..1897980) 1 NC_010117.1 hypothetical protein 1897980 5794224 COXBURSA331_A2079 Coxiella burnetii RSA 331 hypothetical protein YP_001597696.1 1896697 R 360115 CDS YP_001597697.1 161830470 5794768 complement(1898125..1898529) 1 NC_010117.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 1898529 5794768 COXBURSA331_A2081 Coxiella burnetii RSA 331 iron-sulfur cluster insertion protein ErpA YP_001597697.1 1898125 R 360115 CDS YP_001597698.1 161830302 5793404 1898640..1899269 1 NC_010117.1 identified by match to protein family HMM PF01327; peptide deformylase 1899269 def2 5793404 def2 Coxiella burnetii RSA 331 peptide deformylase YP_001597698.1 1898640 D 360115 CDS YP_001597699.1 161831395 5792858 1899266..1899685 1 NC_010117.1 identified by match to protein family HMM PF03653; hypothetical protein 1899685 5792858 COXBURSA331_A2084 Coxiella burnetii RSA 331 hypothetical protein YP_001597699.1 1899266 D 360115 CDS YP_001597700.1 161831563 5793761 complement(1899682..1899855) 1 NC_010117.1 identified by match to protein family HMM PF00301; rubredoxin 1899855 5793761 COXBURSA331_A2083 Coxiella burnetii RSA 331 rubredoxin YP_001597700.1 1899682 R 360115 CDS YP_001597701.1 161829764 5794258 1899898..1901205 1 NC_010117.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1901205 hemL 5794258 hemL Coxiella burnetii RSA 331 glutamate-1-semialdehyde aminotransferase YP_001597701.1 1899898 D 360115 CDS YP_001597702.1 161830510 5793445 1901202..1901756 1 NC_010117.1 hypothetical protein 1901756 5793445 COXBURSA331_A2086 Coxiella burnetii RSA 331 hypothetical protein YP_001597702.1 1901202 D 360115 CDS YP_001597703.1 161830860 5793031 1901759..1902238 1 NC_010117.1 hypothetical protein 1902238 5793031 COXBURSA331_A2087 Coxiella burnetii RSA 331 hypothetical protein YP_001597703.1 1901759 D 360115 CDS YP_001597704.1 161831304 5793940 1902321..1902458 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1902458 5793940 COXBURSA331_A2089 Coxiella burnetii RSA 331 hypothetical protein YP_001597704.1 1902321 D 360115 CDS YP_001597705.1 161829806 5794895 complement(1902473..1902613) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1902613 5794895 COXBURSA331_A2090 Coxiella burnetii RSA 331 hypothetical protein YP_001597705.1 1902473 R 360115 CDS YP_001597706.1 161829934 5793980 complement(1902623..1905004) 1 NC_010117.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 1A 1905004 ponA 5793980 ponA Coxiella burnetii RSA 331 penicillin-binding protein 1A YP_001597706.1 1902623 R 360115 CDS YP_001597707.1 161830970 5793094 1905074..1905868 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1905868 5793094 COXBURSA331_A2092 Coxiella burnetii RSA 331 hypothetical protein YP_001597707.1 1905074 D 360115 CDS YP_001597708.1 161830104 5793210 complement(1906312..1906485) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1906485 5793210 COXBURSA331_A2094 Coxiella burnetii RSA 331 hypothetical protein YP_001597708.1 1906312 R 360115 CDS YP_001597709.1 161830088 5794210 1906584..1906760 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1906760 5794210 COXBURSA331_A2095 Coxiella burnetii RSA 331 hypothetical protein YP_001597709.1 1906584 D 360115 CDS YP_001597710.1 161830646 5793955 1906753..1907802 1 NC_010117.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; type II and III secretion system family protein 1907802 5793955 COXBURSA331_A2096 Coxiella burnetii RSA 331 type II and III secretion system family protein YP_001597710.1 1906753 D 360115 CDS YP_001597711.1 161830773 5794129 1907735..1908274 1 NC_010117.1 identified by match to protein family HMM PF01202; shikimate kinase 1908274 aroK 5794129 aroK Coxiella burnetii RSA 331 shikimate kinase YP_001597711.1 1907735 D 360115 CDS YP_001597712.1 161831322 5794490 1908271..1909353 1 NC_010117.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 1909353 aroB 5794490 aroB Coxiella burnetii RSA 331 3-dehydroquinate synthase YP_001597712.1 1908271 D 360115 CDS YP_001597713.1 161831493 5794215 1909861..1910127 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1910127 5794215 COXBURSA331_A2099 Coxiella burnetii RSA 331 hypothetical protein YP_001597713.1 1909861 D 360115 CDS YP_001597714.1 161829844 5794379 complement(1910136..1911362) 1 NC_010117.1 identified by match to protein family HMM PF07690; major facilitator transporter 1911362 5794379 COXBURSA331_A2100 Coxiella burnetii RSA 331 major facilitator transporter YP_001597714.1 1910136 R 360115 CDS YP_001597715.1 161829834 5794122 1911397..1911525 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1911525 5794122 COXBURSA331_A2101 Coxiella burnetii RSA 331 hypothetical protein YP_001597715.1 1911397 D 360115 CDS YP_001597716.1 161830964 5794292 1911655..1912674 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1912674 5794292 COXBURSA331_A2103 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597716.1 1911655 D 360115 CDS YP_001597717.1 161830395 5793976 complement(1912671..1912943) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1912943 5793976 COXBURSA331_A2102 Coxiella burnetii RSA 331 hypothetical protein YP_001597717.1 1912671 R 360115 CDS YP_001597718.1 161831618 5792700 complement(1912995..1913576) 1 NC_010117.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; putative methyltransferase 1913576 5792700 COXBURSA331_A2104 Coxiella burnetii RSA 331 putative methyltransferase YP_001597718.1 1912995 R 360115 CDS YP_001597719.1 161830590 5793618 complement(1913834..1913965) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1913965 5793618 COXBURSA331_A2105 Coxiella burnetii RSA 331 hypothetical protein YP_001597719.1 1913834 R 360115 CDS YP_001597720.1 161830244 5793068 complement(1914072..1915403) 1 NC_010117.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 1915403 5793068 COXBURSA331_A2106 Coxiella burnetii RSA 331 M16 family peptidase YP_001597720.1 1914072 R 360115 CDS YP_001597721.1 161830728 5793024 complement(1915403..1916731) 1 NC_010117.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 1916731 5793024 COXBURSA331_A2107 Coxiella burnetii RSA 331 M16 family peptidase YP_001597721.1 1915403 R 360115 CDS YP_001597722.1 161831407 5792800 1916971..1917945 1 NC_010117.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 1917945 ftsY 5792800 ftsY Coxiella burnetii RSA 331 signal recognition particle-docking protein FtsY YP_001597722.1 1916971 D 360115 CDS YP_001597723.1 161831431 5793747 1917952..1918605 1 NC_010117.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673; ABC transporter ATP-binding protein 1918605 ftsE 5793747 ftsE Coxiella burnetii RSA 331 ABC transporter ATP-binding protein YP_001597723.1 1917952 D 360115 CDS YP_001597724.1 161831368 5793050 1918716..1919543 1 NC_010117.1 identified by match to protein family HMM PF02687; efflux ABC transporter permease 1919543 5793050 COXBURSA331_A2110 Coxiella burnetii RSA 331 efflux ABC transporter permease YP_001597724.1 1918716 D 360115 CDS YP_001597725.1 161831034 5792821 1919585..1919734 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1919734 5792821 COXBURSA331_A2111 Coxiella burnetii RSA 331 hypothetical protein YP_001597725.1 1919585 D 360115 CDS YP_001597726.1 161830631 5792834 complement(1920023..1920739) 1 NC_010117.1 identified by match to protein family HMM PF00583; acetyltransferase 1920739 5792834 COXBURSA331_A2112 Coxiella burnetii RSA 331 acetyltransferase YP_001597726.1 1920023 R 360115 CDS YP_001597727.1 161829709 5794854 1920905..1921771 1 NC_010117.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 1921771 rpoH 5794854 rpoH Coxiella burnetii RSA 331 RNA polymerase factor sigma-32 YP_001597727.1 1920905 D 360115 CDS YP_001597728.1 161831588 5794106 1921797..1922555 1 NC_010117.1 identified by match to protein family HMM PF01323; outer membrane protein 1922555 com1 5794106 com1 Coxiella burnetii RSA 331 outer membrane protein YP_001597728.1 1921797 D 360115 CDS YP_001597729.1 161830849 5792925 1923186..1924145 1 NC_010117.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1924145 glyQ 5792925 glyQ Coxiella burnetii RSA 331 glycyl-tRNA synthetase subunit alpha YP_001597729.1 1923186 D 360115 CDS YP_001597730.1 161830292 5793351 1924148..1926217 1 NC_010117.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 1926217 glyS 5793351 glyS Coxiella burnetii RSA 331 glycyl-tRNA synthetase subunit beta YP_001597730.1 1924148 D 360115 CDS YP_001597731.1 161829958 5793056 1926214..1927506 1 NC_010117.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; ribosomal RNA small subunit methyltransferase B 1927506 sun 5793056 sun Coxiella burnetii RSA 331 ribosomal RNA small subunit methyltransferase B YP_001597731.1 1926214 D 360115 CDS YP_001597732.1 161830499 5792886 complement(1927493..1927933) 1 NC_010117.1 identified by match to protein family HMM PF00582; universal stress protein family protein 1927933 5792886 COXBURSA331_A2117 Coxiella burnetii RSA 331 universal stress protein family protein YP_001597732.1 1927493 R 360115 CDS YP_001597733.1 161831010 5792872 1928458..1928592 1 NC_010117.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 1928592 rpmH 5792872 rpmH Coxiella burnetii RSA 331 50S ribosomal protein L34 YP_001597733.1 1928458 D 360115 CDS YP_001597734.1 161831534 5793238 1928592..1928957 1 NC_010117.1 identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component 1928957 rnpA 5793238 rnpA Coxiella burnetii RSA 331 ribonuclease P protein component YP_001597734.1 1928592 D 360115 CDS YP_001597735.1 161829801 5794534 1928897..1929163 1 NC_010117.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 1929163 5794534 COXBURSA331_A2121 Coxiella burnetii RSA 331 hypothetical protein YP_001597735.1 1928897 D 360115 CDS YP_001597736.1 161830140 5793768 1929167..1930867 1 NC_010117.1 identified by match to protein family HMM PF02096; inner membrane protein oxaA 1930867 oxaA 5793768 oxaA Coxiella burnetii RSA 331 inner membrane protein oxaA YP_001597736.1 1929167 D 360115 CDS YP_001597737.1 161830663 5794326 1930879..1931028 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1931028 5794326 COXBURSA331_A2123 Coxiella burnetii RSA 331 hypothetical protein YP_001597737.1 1930879 D 360115 CDS YP_001597738.1 161830089 5794164 1931361..1932719 1 NC_010117.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1932719 trmE 5794164 trmE Coxiella burnetii RSA 331 tRNA modification GTPase TrmE YP_001597738.1 1931361 D 360115 CDS YP_001597739.1 161831260 5792926 1933032..1934915 1 NC_010117.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 1934915 gidA 5792926 gidA Coxiella burnetii RSA 331 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001597739.1 1933032 D 360115 CDS YP_001597740.1 161829865 5792743 1934947..1935561 1 NC_010117.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 1935561 gidB 5792743 gidB Coxiella burnetii RSA 331 16S rRNA methyltransferase GidB YP_001597740.1 1934947 D 360115 CDS YP_001597741.1 161830421 5793899 1935568..1936338 1 NC_010117.1 identified by match to protein family HMM PF01656; CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein 1936338 5793899 COXBURSA331_A2127 Coxiella burnetii RSA 331 CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein YP_001597741.1 1935568 D 360115 CDS YP_001597742.1 161830965 5794310 1936335..1937201 1 NC_010117.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB-like partition protein 1937201 5794310 COXBURSA331_A2128 Coxiella burnetii RSA 331 ParB-like partition protein YP_001597742.1 1936335 D 360115 CDS YP_001597743.1 161830319 5793743 1937460..1940018 1 NC_010117.1 identified by match to protein family HMM PF00501; match to protein family HMM PF01553; acyltransferase family protein 1940018 5793743 COXBURSA331_A2129 Coxiella burnetii RSA 331 acyltransferase family protein YP_001597743.1 1937460 D 360115 CDS YP_001597744.1 161830595 5793593 1940092..1941399 1 NC_010117.1 identified by match to protein family HMM PF07690; major facilitator family transporter 1941399 5793593 COXBURSA331_A2130 Coxiella burnetii RSA 331 major facilitator family transporter YP_001597744.1 1940092 D 360115 CDS YP_001597745.1 161830146 5793693 1941443..1941619 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1941619 5793693 COXBURSA331_A2131 Coxiella burnetii RSA 331 hypothetical protein YP_001597745.1 1941443 D 360115 CDS YP_001597746.1 161831363 5794307 1942025..1942156 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1942156 5794307 COXBURSA331_A2132 Coxiella burnetii RSA 331 hypothetical protein YP_001597746.1 1942025 D 360115 CDS YP_001597747.1 161830836 5793974 complement(1942158..1942352) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1942352 5793974 COXBURSA331_A2133 Coxiella burnetii RSA 331 hypothetical protein YP_001597747.1 1942158 R 360115 CDS YP_001597748.1 161830303 5794462 1942460..1943284 1 NC_010117.1 identified by match to protein family HMM PF02735; match to protein family HMM TIGR02772; Ku protein 1943284 5794462 COXBURSA331_A2134 Coxiella burnetii RSA 331 Ku protein YP_001597748.1 1942460 D 360115 CDS YP_001597749.1 161829752 5793783 1943281..1945728 1 NC_010117.1 identified by match to protein family HMM PF01068; match to protein family HMM PF01896; match to protein family HMM PF04679; match to protein family HMM TIGR02776; match to protein family HMM TIGR02777; match to protein family HMM TIGR02778; match to protein family HMM TIGR02779; DNA ligase D 1945728 ligD 5793783 ligD Coxiella burnetii RSA 331 DNA ligase D YP_001597749.1 1943281 D 360115 CDS YP_001597750.1 161829964 5793152 complement(1946002..1946115) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1946115 5793152 COXBURSA331_A2136 Coxiella burnetii RSA 331 hypothetical protein YP_001597750.1 1946002 R 360115 CDS YP_001597751.1 161831602 5794576 complement(1946082..1946603) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1946603 5794576 COXBURSA331_A2137 Coxiella burnetii RSA 331 hypothetical protein YP_001597751.1 1946082 R 360115 CDS YP_001597752.1 161830874 5792825 complement(1946604..1947401) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1947401 5792825 COXBURSA331_A2138 Coxiella burnetii RSA 331 hypothetical protein YP_001597752.1 1946604 R 360115 CDS YP_001597753.1 161831526 5793154 complement(1947344..1947544) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1947544 5793154 COXBURSA331_A2139 Coxiella burnetii RSA 331 hypothetical protein YP_001597753.1 1947344 R 360115 CDS YP_001597754.1 161829838 5793412 1949026..1949427 1 NC_010117.1 identified by match to protein family HMM PF03899; ATP synthase F0, I subunit 1949427 atpI 5793412 atpI Coxiella burnetii RSA 331 ATP synthase F0, I subunit YP_001597754.1 1949026 D 360115 CDS YP_001597755.1 161831504 5794718 1949428..1950222 1 NC_010117.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 1950222 atpB 5794718 atpB Coxiella burnetii RSA 331 F0F1 ATP synthase subunit A YP_001597755.1 1949428 D 360115 CDS YP_001597756.1 161830956 5793409 1950240..1950542 1 NC_010117.1 identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260; ATP synthase F0 subunit C 1950542 atpE 5793409 atpE Coxiella burnetii RSA 331 ATP synthase F0 subunit C YP_001597756.1 1950240 D 360115 CDS YP_001597757.1 161831252 5792717 1950671..1951141 1 NC_010117.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 1951141 atpF 5792717 atpF Coxiella burnetii RSA 331 F0F1 ATP synthase subunit B YP_001597757.1 1950671 D 360115 CDS YP_001597758.1 161829858 5793054 1951141..1951698 1 NC_010117.1 identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145; ATP synthase F1 subunit delta 1951698 atpH 5793054 atpH Coxiella burnetii RSA 331 ATP synthase F1 subunit delta YP_001597758.1 1951141 D 360115 CDS YP_001597759.1 161831117 5794720 1951706..1953253 1 NC_010117.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 1953253 atpA 5794720 atpA Coxiella burnetii RSA 331 F0F1 ATP synthase subunit alpha YP_001597759.1 1951706 D 360115 CDS YP_001597760.1 161830155 5794377 1953352..1954221 1 NC_010117.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 1954221 atpG 5794377 atpG Coxiella burnetii RSA 331 F0F1 ATP synthase subunit gamma YP_001597760.1 1953352 D 360115 CDS YP_001597761.1 161830152 5793654 1954323..1955708 1 NC_010117.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1955708 atpD 5793654 atpD Coxiella burnetii RSA 331 F0F1 ATP synthase subunit beta YP_001597761.1 1954323 D 360115 CDS YP_001597762.1 161831437 5793283 1955705..1955839 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1955839 5793283 COXBURSA331_A2149 Coxiella burnetii RSA 331 hypothetical protein YP_001597762.1 1955705 D 360115 CDS YP_001597763.1 161831029 5793784 1955832..1956260 1 NC_010117.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 1956260 atpC 5793784 atpC Coxiella burnetii RSA 331 F0F1 ATP synthase subunit epsilon YP_001597763.1 1955832 D 360115 CDS YP_001597764.1 161829868 5793389 1956279..1957646 1 NC_010117.1 identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173; UDP-N-acetylglucosamine pyrophosphorylase 1957646 glmU 5793389 glmU Coxiella burnetii RSA 331 UDP-N-acetylglucosamine pyrophosphorylase YP_001597764.1 1956279 D 360115 CDS YP_001597765.1 161831424 5794207 complement(1959666..1960112) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1960112 5794207 COXBURSA331_A2153 Coxiella burnetii RSA 331 hypothetical protein YP_001597765.1 1959666 R 360115 CDS YP_001597766.1 161830361 5794743 1960174..1960290 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1960290 5794743 COXBURSA331_A2154 Coxiella burnetii RSA 331 hypothetical protein YP_001597766.1 1960174 D 360115 CDS YP_001597767.1 161830070 5793058 1960356..1961954 1 NC_010117.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02463; ABC transporter ATP-binding protein 1961954 5793058 COXBURSA331_A2156 Coxiella burnetii RSA 331 ABC transporter ATP-binding protein YP_001597767.1 1960356 D 360115 CDS YP_001597768.1 161831090 5793447 complement(1961912..1962523) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1962523 5793447 COXBURSA331_A2155 Coxiella burnetii RSA 331 hypothetical protein YP_001597768.1 1961912 R 360115 CDS YP_001597769.1 161830724 5794113 complement(1962718..1963590) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1963590 5794113 COXBURSA331_A2157 Coxiella burnetii RSA 331 hypothetical protein YP_001597769.1 1962718 R 360115 CDS YP_001597770.1 161830591 5793301 1963675..1964838 1 NC_010117.1 identified by match to protein family HMM PF01262; match to protein family HMM PF05222; NAD(P) transhydrogenase subunit alpha 1964838 pntAA 5793301 pntAA Coxiella burnetii RSA 331 NAD(P) transhydrogenase subunit alpha YP_001597770.1 1963675 D 360115 CDS YP_001597771.1 161830310 5793309 1965221..1965520 1 NC_010117.1 NAD(P) transhydrogenase subunit alpha 1965520 pntAB 5793309 pntAB Coxiella burnetii RSA 331 NAD(P) transhydrogenase subunit alpha YP_001597771.1 1965221 D 360115 CDS YP_001597772.1 161831451 5793679 1965517..1966887 1 NC_010117.1 identified by match to protein family HMM PF02233; NAD(P) transhydrogenase subunit alpha 1966887 pntB 5793679 pntB Coxiella burnetii RSA 331 NAD(P) transhydrogenase subunit alpha YP_001597772.1 1965517 D 360115 CDS YP_001597773.1 161831038 5793894 complement(1967547..1968281) 1 NC_010117.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1968281 5793894 COXBURSA331_A2161 Coxiella burnetii RSA 331 16S ribosomal RNA methyltransferase RsmE YP_001597773.1 1967547 R 360115 CDS YP_001597774.1 161829947 5794271 1968376..1968648 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1968648 5794271 COXBURSA331_A2164 Coxiella burnetii RSA 331 hypothetical protein YP_001597774.1 1968376 D 360115 CDS YP_001597775.1 161830373 5792849 complement(1968645..1969355) 1 NC_010117.1 identified by match to protein family HMM PF01548; transposase for insertion sequence element IS1111A 1969355 5792849 COXBURSA331_A2163 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597775.1 1968645 R 360115 CDS YP_001597776.1 161831221 5794839 1969404..1971437 1 NC_010117.1 identified by match to protein family HMM PF01432; oligopeptidase A 1971437 prlC 5794839 prlC Coxiella burnetii RSA 331 oligopeptidase A YP_001597776.1 1969404 D 360115 CDS YP_001597777.1 161831182 5793819 1971518..1972501 1 NC_010117.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545; putative 3-oxoacyl-(acyl-carrier-protein) synthase III 1972501 5793819 COXBURSA331_A2167 Coxiella burnetii RSA 331 putative 3-oxoacyl-(acyl-carrier-protein) synthase III YP_001597777.1 1971518 D 360115 CDS YP_001597778.1 161830370 5794500 1972699..1973316 1 NC_010117.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 1973316 5794500 COXBURSA331_A2168 Coxiella burnetii RSA 331 3-hydroxydecanoyl-ACP dehydratase YP_001597778.1 1972699 D 360115 CDS YP_001597779.1 161830307 5793245 1973320..1973799 1 NC_010117.1 identified by match to protein family HMM PF07977; putative beta-hydroxyacyl-(acyl-carrier-protein) dehydratase 1973799 5793245 COXBURSA331_A2169 Coxiella burnetii RSA 331 putative beta-hydroxyacyl-(acyl-carrier-protein) dehydratase YP_001597779.1 1973320 D 360115 CDS YP_001597780.1 161829713 5793098 1973796..1975070 1 NC_010117.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801; beta-ketoacyl-acyl-carrier-protein-synthase family protein 1975070 5793098 COXBURSA331_A2170 Coxiella burnetii RSA 331 beta-ketoacyl-acyl-carrier-protein-synthase family protein YP_001597780.1 1973796 D 360115 CDS YP_001597781.1 161831631 5793602 1975093..1975353 1 NC_010117.1 putative acyl carrier protein 1975353 5793602 COXBURSA331_A2171 Coxiella burnetii RSA 331 putative acyl carrier protein YP_001597781.1 1975093 D 360115 CDS YP_001597782.1 161830729 5793963 1975357..1976058 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1976058 5793963 COXBURSA331_A2172 Coxiella burnetii RSA 331 hypothetical protein YP_001597782.1 1975357 D 360115 CDS YP_001597783.1 161830512 5793334 1976661..1977599 1 NC_010117.1 putative oxidoreductase 1977599 5793334 COXBURSA331_A2173 Coxiella burnetii RSA 331 putative oxidoreductase YP_001597783.1 1976661 D 360115 CDS YP_001597784.1 161830103 5793734 1977698..1978885 1 NC_010117.1 identified by match to protein family HMM PF00368; hydroxymethylglutaryl-coenzyme A reductase 1978885 5793734 COXBURSA331_A2174 Coxiella burnetii RSA 331 hydroxymethylglutaryl-coenzyme A reductase YP_001597784.1 1977698 D 360115 CDS YP_001597785.1 161830877 5793387 1979031..1979570 1 NC_010117.1 identified by match to protein family HMM PF01553; putative acyltransferase 1979570 5793387 COXBURSA331_A2175 Coxiella burnetii RSA 331 putative acyltransferase YP_001597785.1 1979031 D 360115 CDS YP_001597786.1 161830940 5792797 1979561..1981252 1 NC_010117.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; oxidase, FAD-binding 1981252 5792797 COXBURSA331_A2176 Coxiella burnetii RSA 331 oxidase, FAD-binding YP_001597786.1 1979561 D 360115 CDS YP_001597787.1 161830437 5792819 1981249..1982139 1 NC_010117.1 identified by match to protein family HMM PF01553; putative acyltransferase 1982139 5792819 COXBURSA331_A2177 Coxiella burnetii RSA 331 putative acyltransferase YP_001597787.1 1981249 D 360115 CDS YP_001597788.1 161830154 5793079 1982281..1982943 1 NC_010117.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1982943 rpiA 5793079 rpiA Coxiella burnetii RSA 331 ribose-5-phosphate isomerase A YP_001597788.1 1982281 D 360115 CDS YP_001597789.1 161831293 5794376 1983090..1983212 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1983212 5794376 COXBURSA331_A2179 Coxiella burnetii RSA 331 hypothetical protein YP_001597789.1 1983090 D 360115 CDS YP_001597790.1 161830795 5793865 1983308..1983514 1 NC_010117.1 identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202; carbon storage regulator 1983514 csrA2 5793865 csrA2 Coxiella burnetii RSA 331 carbon storage regulator YP_001597790.1 1983308 D 360115 CDS YP_001597791.1 161830468 5792975 1983654..1984154 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1984154 5792975 COXBURSA331_A2181 Coxiella burnetii RSA 331 hypothetical protein YP_001597791.1 1983654 D 360115 CDS YP_001597792.1 161829921 5793440 complement(1984160..1984969) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1984969 5793440 COXBURSA331_A2182 Coxiella burnetii RSA 331 hypothetical protein YP_001597792.1 1984160 R 360115 CDS YP_001597793.1 161831082 5794392 complement(1985207..1987618) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1987618 5794392 COXBURSA331_A2183 Coxiella burnetii RSA 331 hypothetical protein YP_001597793.1 1985207 R 360115 CDS YP_001597794.1 161830524 5792808 1987862..1988398 1 NC_010117.1 identified by match to protein family HMM PF00313; match to protein family HMM TIGR00741; ribosomal subunit interface protein domain/'cold-shock' DNA-binding domain-containing protein 1988398 5792808 COXBURSA331_A2184 Coxiella burnetii RSA 331 ribosomal subunit interface protein domain/'cold-shock' DNA-binding domain-containing protein YP_001597794.1 1987862 D 360115 CDS YP_001597795.1 161830240 5793666 complement(1988629..1989072) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1989072 5793666 COXBURSA331_A2185 Coxiella burnetii RSA 331 hypothetical protein YP_001597795.1 1988629 R 360115 CDS YP_001597796.1 161831613 5793379 complement(1989156..1989881) 1 NC_010117.1 identified by match to protein family HMM PF01791; match to protein family HMM TIGR00126; deoxyribose-phosphate aldolase 1989881 deoC 5793379 deoC Coxiella burnetii RSA 331 deoxyribose-phosphate aldolase YP_001597796.1 1989156 R 360115 CDS YP_001597797.1 161829986 5794156 complement(1989878..1990699) 1 NC_010117.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 1990699 xapA 5794156 xapA Coxiella burnetii RSA 331 purine nucleoside phosphorylase YP_001597797.1 1989878 R 360115 CDS YP_001597798.1 161830420 5792911 complement(1990701..1991381) 1 NC_010117.1 identified by match to protein family HMM PF01865; match to protein family HMM TIGR00153; hypothetical protein 1991381 5792911 COXBURSA331_A2188 Coxiella burnetii RSA 331 hypothetical protein YP_001597798.1 1990701 R 360115 CDS YP_001597799.1 161830882 5794175 1991494..1992747 1 NC_010117.1 identified by match to protein family HMM PF01384; phosphate transporter family protein 1992747 5794175 COXBURSA331_A2189 Coxiella burnetii RSA 331 phosphate transporter family protein YP_001597799.1 1991494 D 360115 CDS YP_001597800.1 161831278 5794645 1993017..1993826 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1993826 5794645 COXBURSA331_A2190 Coxiella burnetii RSA 331 hypothetical protein YP_001597800.1 1993017 D 360115 CDS YP_001597801.1 161830111 5793247 complement(1994170..1994988) 1 NC_010117.1 identified by match to protein family HMM PF01488; match to protein family HMM PF08501; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase 1994988 aroE 5793247 aroE Coxiella burnetii RSA 331 shikimate 5-dehydrogenase YP_001597801.1 1994170 R 360115 CDS YP_001597802.1 161830665 5792753 complement(1994981..1996414) 1 NC_010117.1 identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 1996414 dacB 5792753 dacB Coxiella burnetii RSA 331 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_001597802.1 1994981 R 360115 CDS YP_001597803.1 161830085 5794608 complement(1996414..1996968) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1996968 5794608 COXBURSA331_A2193 Coxiella burnetii RSA 331 hypothetical protein YP_001597803.1 1996414 R 360115 CDS YP_001597804.1 161830636 5794337 1997170..1997283 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1997283 5794337 COXBURSA331_A2194 Coxiella burnetii RSA 331 hypothetical protein YP_001597804.1 1997170 D 360115 CDS YP_001597805.1 161829768 5794400 1997286..1997579 1 NC_010117.1 identified by match to protein family HMM PF04365; hypothetical protein 1997579 5794400 COXBURSA331_A2195 Coxiella burnetii RSA 331 hypothetical protein YP_001597805.1 1997286 D 360115 CDS YP_001597806.1 161830947 5793193 1997576..1997788 1 NC_010117.1 hypothetical protein 1997788 5793193 COXBURSA331_A2196 Coxiella burnetii RSA 331 hypothetical protein YP_001597806.1 1997576 D 360115 CDS YP_001597807.1 161830917 5793668 1998075..1998191 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1998191 5793668 COXBURSA331_A2198 Coxiella burnetii RSA 331 hypothetical protein YP_001597807.1 1998075 D 360115 CDS YP_001597808.1 161831521 5794523 complement(1998188..1999207) 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 1999207 5794523 COXBURSA331_A2197 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597808.1 1998188 R 360115 CDS YP_001597809.1 161831587 5792748 complement(1999395..1999691) 1 NC_010117.1 hypothetical protein 1999691 5792748 COXBURSA331_A2199 Coxiella burnetii RSA 331 hypothetical protein YP_001597809.1 1999395 R 360115 CDS YP_001597810.1 161829940 5794250 complement(1999703..1999822) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 1999822 5794250 COXBURSA331_A2200 Coxiella burnetii RSA 331 hypothetical protein YP_001597810.1 1999703 R 360115 CDS YP_001597811.1 161830496 5793222 complement(1999898..2000086) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 2000086 5793222 COXBURSA331_A2201 Coxiella burnetii RSA 331 hypothetical protein YP_001597811.1 1999898 R 360115 CDS YP_001597812.1 161830778 5793690 complement(2000098..2000778) 1 NC_010117.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364; queuosine biosynthesis protein QueC 2000778 queC 5793690 queC Coxiella burnetii RSA 331 queuosine biosynthesis protein QueC YP_001597812.1 2000098 R 360115 CDS YP_001597813.1 161831352 5792856 complement(2000850..2001617) 1 NC_010117.1 hypothetical protein 2001617 5792856 COXBURSA331_A2203 Coxiella burnetii RSA 331 hypothetical protein YP_001597813.1 2000850 R 360115 CDS YP_001597814.1 161830756 5792980 complement(2001620..2002798) 1 NC_010117.1 identified by match to protein family HMM PF07219; hemY protein 2002798 hemY 5792980 hemY Coxiella burnetii RSA 331 hemY protein YP_001597814.1 2001620 R 360115 CDS YP_001597815.1 161831181 5794261 complement(2002803..2003756) 1 NC_010117.1 identified by match to protein family HMM PF04375; putaitve hemX protein 2003756 5794261 COXBURSA331_A2205 Coxiella burnetii RSA 331 putaitve hemX protein YP_001597815.1 2002803 R 360115 CDS YP_001597816.1 161831629 5794627 complement(2003846..2004205) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 2004205 5794627 COXBURSA331_A2206 Coxiella burnetii RSA 331 hypothetical protein YP_001597816.1 2003846 R 360115 CDS YP_001597817.1 161829950 5793101 2004560..2005606 1 NC_010117.1 identified by match to protein family HMM PF02661; hypothetical protein 2005606 5793101 COXBURSA331_A2207 Coxiella burnetii RSA 331 hypothetical protein YP_001597817.1 2004560 D 360115 CDS YP_001597818.1 161829822 5793049 2005691..2006710 1 NC_010117.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase for insertion sequence element IS1111A 2006710 5793049 COXBURSA331_A2209 Coxiella burnetii RSA 331 transposase for insertion sequence element IS1111A YP_001597818.1 2005691 D 360115 CDS YP_001597819.1 161830494 5794840 complement(2006707..2006979) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 2006979 5794840 COXBURSA331_A2208 Coxiella burnetii RSA 331 hypothetical protein YP_001597819.1 2006707 R 360115 CDS YP_001597820.1 161830205 5793968 complement(2007064..2008320) 1 NC_010117.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 2008320 rho 5793968 rho Coxiella burnetii RSA 331 transcription termination factor Rho YP_001597820.1 2007064 R 360115 CDS YP_001597821.1 161829780 5793657 complement(2008496..2008834) 1 NC_010117.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 2008834 trxA 5793657 trxA Coxiella burnetii RSA 331 thioredoxin YP_001597821.1 2008496 R 360115 CDS YP_001597822.1 161831025 5793503 2009251..2010600 1 NC_010117.1 identified by match to protein family HMM PF00209; sodium:neurotransmitter symporter family protein 2010600 5793503 COXBURSA331_A2213 Coxiella burnetii RSA 331 sodium:neurotransmitter symporter family protein YP_001597822.1 2009251 D 360115 CDS YP_001597823.1 161830594 5794060 complement(2010695..2011273) 1 NC_010117.1 identified by match to protein family HMM PF02325; hypothetical protein 2011273 5794060 COXBURSA331_A2214 Coxiella burnetii RSA 331 hypothetical protein YP_001597823.1 2010695 R 360115 CDS YP_001597824.1 161829930 5794037 complement(2011273..2012097) 1 NC_010117.1 identified by match to protein family HMM PF01210; match to protein family HMM PF03807; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase 2012097 proC 5794037 proC Coxiella burnetii RSA 331 pyrroline-5-carboxylate reductase YP_001597824.1 2011273 R 360115 CDS YP_001597825.1 161831443 5793973 complement(2012094..2012780) 1 NC_010117.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 2012780 5793973 COXBURSA331_A2216 Coxiella burnetii RSA 331 hypothetical protein YP_001597825.1 2012094 R 360115 CDS YP_001597826.1 161830986 5794006 complement(2012770..2014323) 1 NC_010117.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 2014323 pckA 5794006 pckA Coxiella burnetii RSA 331 phosphoenolpyruvate carboxykinase YP_001597826.1 2012770 R 360115 CDS YP_001597827.1 161830461 5793598 complement(2014358..2014486) 1 NC_010117.1 identified by glimmer; putative; hypothetical protein 2014486 5793598 COXBURSA331_A2218 Coxiella burnetii RSA 331 hypothetical protein YP_001597827.1 2014358 R 360115 CDS YP_001597828.1 161830662 5793910 2014457..2015002 1 NC_010117.1 identified by match to protein family HMM PF02622; hypothetical protein 2015002 5793910 COXBURSA331_A2219 Coxiella burnetii RSA 331 hypothetical protein YP_001597828.1 2014457 D 360115 CDS YP_001597829.1 161831062 5794121 2014995..2015420 1 NC_010117.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 2015420 5794121 COXBURSA331_A2220 Coxiella burnetii RSA 331 Holliday junction resolvase-like protein YP_001597829.1 2014995 D 360115 CDS YP_001597830.1 161831597 5793416 2015413..2016345 1 NC_010117.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 2016345 pyrB 5793416 pyrB Coxiella burnetii RSA 331 aspartate carbamoyltransferase catalytic subunit YP_001597830.1 2015413 D 360115 CDS