-- dump date 20140619_045632 -- class Genbank::CDS -- table cds_note -- id note YP_005686552.1 TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; KEGG: cce:Ccel_0001 chromosomal replication initiation protein; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase YP_005686553.1 SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; KEGG: cce:Ccel_0002 DNA polymerase III subunit beta; PFAM: DNA polymerase III beta chain YP_005686554.1 TIGRFAM: S4 domain protein YaaA; PFAM: RNA-binding S4 domain protein; KEGG: cbt:CLH_0003 S4 domain protein YaaA; SMART: RNA-binding S4 domain protein YP_005686555.1 KEGG: cce:Ccel_0004 DNA replication and repair protein RecF; TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein YP_005686556.1 KEGG: cce:Ccel_0005 hypothetical protein YP_005686557.1 SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; TIGRFAM: DNA gyrase, B subunit; KEGG: cce:Ccel_0006 DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain-containing protein; DNA gyrase subunit B domain protein YP_005686558.1 KEGG: cce:Ccel_0007 cobyrinic acid ac-diamide synthase YP_005686559.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cce:Ccel_0008 ParB-like partition protein; SMART: ParB domain protein nuclease YP_005686560.1 KEGG: cce:Ccel_0009 hypothetical protein YP_005686561.1 KEGG: cce:Ccel_0010 TPR repeat-containing protein YP_005686562.1 TIGRFAM: seryl-tRNA synthetase; KEGG: tit:Thit_0028 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like YP_005686563.1 PFAM: major facilitator superfamily MFS_1; KEGG: clj:CLJU_c15860 putative permease YP_005686564.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_3336 hypothetical protein YP_005686565.1 PFAM: S-layer domain-containing protein; KEGG: aoe:Clos_2628 S-layer domain-containing protein YP_005686566.1 KEGG: cce:Ccel_0013 hypothetical protein YP_005686567.1 PFAM: VanW family protein; G5 domain protein; Putative peptidoglycan binding domain; KEGG: tit:Thit_1561 VanW family protein YP_005686568.1 KEGG: cbi:CLJ_B1489 zinc carboxypeptidase family protein; PFAM: peptidase M14 carboxypeptidase A; Peptidoglycan-binding domain 1 protein; Peptidoglycan-binding lysin domain; SMART: peptidase M14 carboxypeptidase A; Peptidoglycan-binding LysM YP_005686569.1 KEGG: aoe:Clos_2803 hypothetical protein YP_005686570.1 KEGG: tit:Thit_0041 pro-sigmaK processing inhibitor BofA; TIGRFAM: pro-sigmaK processing inhibitor BofA; PFAM: sigmaK-factor processing regulatory BofA YP_005686571.1 TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; KEGG: csc:Csac_1458 pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain YP_005686572.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; KEGG: ate:Athe_0875 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit YP_005686573.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: csc:Csac_1460 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_005686574.1 PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: ate:Athe_0877 thiamine pyrophosphate protein domain protein TPP-binding YP_005686575.1 manually curated; KEGG: cbf:CLI_0403 putative lipoprotein YP_005686576.1 KEGG: dae:Dtox_3198 signal transduction histidine kinase regulating citrate/malate metabolism YP_005686577.1 KEGG: pth:PTH_1966 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_005686578.1 KEGG: amt:Amet_4717 methyl-accepting chemotaxis sensory transducer YP_005686579.1 PFAM: glycosyl transferase family 39; KEGG: cpr:CPR_0954 dolichyl-phosphate-mannose-protein mannosyltransferase family protein YP_005686580.1 TIGRFAM: spore coat protein, CotS family; KEGG: cce:Ccel_0017 spore coat protein, CotS family YP_005686581.1 KEGG: cce:Ccel_0018 formate-tetrahydrofolate ligase FTHFS; PFAM: formate-tetrahydrofolate ligase FTHFS YP_005686582.1 KEGG: cbt:CLH_0458 sporulation peptidase YabG; TIGRFAM: sporulation peptidase YabG; PFAM: peptidase U57 YabG YP_005686583.1 PFAM: protein of unknown function DUF1021; KEGG: cce:Ccel_0020 protein of unknown function DUF1021 YP_005686584.1 KEGG: cce:Ccel_0021 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM YP_005686585.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: cce:Ccel_0022 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein YP_005686586.1 KEGG: cce:Ccel_0023 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_005686587.1 PFAM: Heavy metal transport/detoxification protein; KEGG: bmq:BMQ_1910 copper-translocating P-type ATPase YP_005686588.1 KEGG: swo:Swol_1447 chemotaxis operon protein YP_005686589.1 KEGG: cce:Ccel_0024 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_005686590.1 PFAM: PspA/IM30 family protein; KEGG: cce:Ccel_0025 phage shock protein A, PspA YP_005686591.1 KEGG: cce:Ccel_0027 hypothetical protein YP_005686592.1 PFAM: protein of unknown function DUF342; KEGG: cce:Ccel_0028 protein of unknown function DUF342 YP_005686593.1 PFAM: metallophosphoesterase; KEGG: cce:Ccel_0031 metallophosphoesterase YP_005686594.1 PFAM: SMC domain protein; KEGG: cpe:CPE2159 hypothetical protein YP_005686595.1 PFAM: NLP/P60 protein; protein of unknown function DUF1058; KEGG: cce:Ccel_0033 NLP/P60 protein YP_005686596.1 KEGG: cce:Ccel_0035 spore cortex-lytic enzyme; TIGRFAM: spore cortex-lytic enzyme; PFAM: cell wall hydrolase SleB; Peptidoglycan-binding domain 1 protein YP_005686597.1 KEGG: cce:Ccel_0036 germination protein YpeB; TIGRFAM: germination protein YpeB; PFAM: Propeptide PepSY amd peptidase M4 YP_005686598.1 PFAM: Abortive infection protein; KEGG: cce:Ccel_0040 abortive infection protein YP_005686599.1 SMART: AAA ATPase; KEGG: cce:Ccel_0041 DNA replication protein DnaC YP_005686600.1 KEGG: cce:Ccel_0042 primosome, DnaD subunit YP_005686601.1 KEGG: cpy:Cphy_0935 HD superfamily phosphohydrolase-like protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_005686602.1 KEGG: fno:Fnod_0913 response regulator receiver modulated diguanylate cyclase YP_005686603.1 KEGG: cbi:CLJ_B1962 putative surface protein YP_005686604.1 KEGG: ace:Acel_0616 cellulose-binding family II protein; PFAM: type 3a cellulose-binding domain protein; SMART: von Willebrand factor type A YP_005686605.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: dae:Dtox_3690 copper amine oxidase domain protein YP_005686606.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: ctc:CTC01666 chemotaxis MotA protein YP_005686607.1 PFAM: OmpA/MotB domain protein; KEGG: aoe:Clos_1491 OmpA/MotB domain-containing protein YP_005686608.1 PFAM: protein of unknown function DUF1385; KEGG: cce:Ccel_3374 protein of unknown function DUF1385 YP_005686609.1 TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; KEGG: cce:Ccel_3373 modification methylase, HemK family; PFAM: Methyltransferase type 11 YP_005686610.1 KEGG: cce:Ccel_3372 sporulation integral membrane protein YtvI; TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118 YP_005686611.1 KEGG: clo:HMPREF0868_1549 electron transport complex, RnfABCDGE type, C subunit; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain YP_005686612.1 KEGG: ctc:CTC01020 RnfD/NqrB; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein YP_005686613.1 KEGG: cdl:CDR20291_0975 electron transport complex protein; TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein YP_005686614.1 KEGG: clo:HMPREF0868_1546 electron transport complex, RnfABCDGE type, E subunit; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit YP_005686615.1 KEGG: clo:HMPREF0868_1545 electron transport complex, RnfABCDGE type, A subunit; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit YP_005686616.1 KEGG: cno:NT01CX_1584 ferredoxin; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein YP_005686617.1 KEGG: cce:Ccel_3475 hypothetical protein YP_005686618.1 PFAM: shikimate kinase; KEGG: mem:Memar_2255 shikimate kinase YP_005686619.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pjd:Pjdr2_3003 GCN5-related N-acetyltransferase YP_005686620.1 KEGG: dhd:Dhaf_0958 hypothetical protein YP_005686621.1 KEGG: pjd:Pjdr2_3763 transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_005686622.1 PFAM: Carbohydrate kinase, FGGY-like; KEGG: tna:CTN_1624 glycerol kinase 1 YP_005686623.1 PFAM: Transketolase domain-containing protein; KEGG: tna:CTN_1622 transketolase, N-terminal subunit YP_005686624.1 PFAM: Transketolase domain-containing protein; Transketolase central region; KEGG: tna:CTN_1623 transketolase, C-terminal subunit YP_005686625.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: cpf:CPF_0732 L-iditol 2-dehydrogenase YP_005686626.1 KEGG: rcu:RCOM_2001640 D-allose-binding periplasmic protein precursor, putative YP_005686627.1 KEGG: dth:DICTH_0297 ribose transport ATP-binding protein RbsA; PFAM: ABC transporter related; SMART: AAA ATPase YP_005686628.1 PFAM: inner-membrane translocator; KEGG: oih:OB2573 ribose ABC transporter permease YP_005686629.1 PFAM: Phosphoglycerate mutase; KEGG: eel:EUBELI_00289 phosphoglycerate mutase YP_005686630.1 KEGG: tjr:TherJR_0590 SNF2-related protein; PFAM: SNF2 helicase associated domain protein ; helicase domain protein; SNF2-related protein; SMART: DEAD-like helicase ; helicase domain protein YP_005686631.1 KEGG: cce:Ccel_3460 oligoendopeptidase F; TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F YP_005686632.1 KEGG: gwc:GWCH70_1293 MazG nucleotide pyrophosphohydrolase YP_005686633.1 KEGG: cce:Ccel_0274 S-layer domain protein; PFAM: S-layer domain-containing protein; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein YP_005686634.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: pth:PTH_0025 cytosine/adenosine deaminases YP_005686635.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbl:CLK_3426 hypothetical protein YP_005686636.1 PFAM: 3D domain-containing protein; KEGG: csc:Csac_0761 3D domain-containing protein YP_005686637.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; KEGG: cce:Ccel_3000 transcriptional regulator, LacI family YP_005686638.1 KEGG: bpd:BURPS668_A0166 rhs element Vgr protein; PFAM: S-layer domain-containing protein; type 3a cellulose-binding domain protein; Laminin G sub domain 2; SMART: LamG domain protein jellyroll fold domain protein YP_005686639.1 PFAM: peptidase U57 YabG; KEGG: cce:Ccel_0237 peptidase U57 YabG YP_005686640.1 KEGG: cno:NT01CX_2289 DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein YP_005686641.1 PFAM: protein of unknown function DUF368; KEGG: cpy:Cphy_0717 hypothetical protein YP_005686642.1 PFAM: MscS Mechanosensitive ion channel; KEGG: cce:Ccel_3355 MscS mechanosensitive ion channel YP_005686643.1 PFAM: protein of unknown function DUF951; KEGG: cce:Ccel_3354 protein of unknown function DUF951 YP_005686644.1 KEGG: tit:Thit_2306 HtrA2 peptidase; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_005686645.1 KEGG: cce:Ccel_3353 hypothetical protein YP_005686646.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cyc:PCC7424_5071 CMP/dCMP deaminase zinc-binding YP_005686647.1 KEGG: cce:Ccel_3437 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein YP_005686648.1 KEGG: cce:Ccel_3436 acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein YP_005686649.1 TIGRFAM: ketol-acid reductoisomerase; KEGG: cce:Ccel_3435 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain-containing protein; acetohydroxy acid isomeroreductase YP_005686650.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; KEGG: cce:Ccel_3433 putative alpha-isopropylmalate/homocitrate synthase family transferase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein YP_005686651.1 KEGG: cce:Ccel_3432 hypothetical protein YP_005686652.1 KEGG: cac:CA_C1770 putative RNA polymerase sigma factor SigI; TIGRFAM: RNA polymerase sigma-I factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein YP_005686653.1 KEGG: cbe:Cbei_1303 hypothetical protein YP_005686654.1 KEGG: amt:Amet_0768 hypothetical protein YP_005686655.1 KEGG: cbi:CLJ_B1219 rrf2 family protein; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_005686656.1 KEGG: aoe:Clos_1324 glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; Shikimate/quinate 5-dehydrogenase YP_005686657.1 TIGRFAM: siroheme synthase; KEGG: aoe:Clos_1326 precorrin-6X reductase YP_005686658.1 KEGG: aoe:Clos_1327 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase YP_005686659.1 KEGG: aoe:Clos_1328 uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4 YP_005686660.1 KEGG: aoe:Clos_1329 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase YP_005686661.1 KEGG: aoe:Clos_1330 glutamate-1-semialdehyde aminotransferase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III YP_005686662.1 KEGG: dhd:Dhaf_4118 sulfate ABC transporter, periplasmic sulfate-binding protein; TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1 YP_005686663.1 KEGG: dhd:Dhaf_4117 sulfate ABC transporter, inner membrane subunit CysT; TIGRFAM: sulfate ABC transporter, inner membrane subunit CysT; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_005686664.1 KEGG: dsy:DSY2956 hypothetical protein; TIGRFAM: sulfate ABC transporter, inner membrane subunit CysW; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_005686665.1 TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: dhd:Dhaf_4115 sulfate ABC transporter, ATPase subunit; SMART: AAA ATPase YP_005686666.1 TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; phosphoadenosine phosphosulfate reductase; KEGG: dsy:DSY2953 phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase YP_005686667.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dsy:DSY2952 sulfate adenylyltransferase subunit 2 YP_005686668.1 KEGG: dhd:Dhaf_4111 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; adenylylsulfate kinase YP_005686669.1 KEGG: dhd:Dhaf_4110 thiamine biosynthesis protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein YP_005686670.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: dhd:Dhaf_4109 UBA/ThiF-type NAD/FAD binding protein YP_005686671.1 KEGG: csc:Csac_1636 Mov34/MPN/PAD-1 family protein; PFAM: Mov34/MPN/PAD-1 family protein; SMART: Mov34/MPN/PAD-1 family protein YP_005686672.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: dhd:Dhaf_4107 nitrite and sulphite reductase 4Fe-4S region YP_005686673.1 PFAM: SirA-like domain-containing protein; KEGG: csc:Csac_1638 SirA family protein YP_005686674.1 KEGG: gtn:GTNG_0327 hypothetical protein; manually curated; PFAM: Lipoprotein LpqB, GerMN domain YP_005686675.1 KEGG: swo:Swol_1212 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_005686676.1 KEGG: dsy:DSY1956 hypothetical protein YP_005686677.1 KEGG: dsy:DSY1956 hypothetical protein YP_005686678.1 KEGG: gym:GYMC10_3914 integral membrane sensor signal transduction histidine kinase YP_005686679.1 KEGG: cce:Ccel_0666 cell envelope-related transcriptional attenuator YP_005686680.1 KEGG: cbe:Cbei_2360 alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein YP_005686682.1 PFAM: Dockerin type 1; KEGG: cce:Ccel_0752 glycoside hydrolase family 26 YP_005686683.1 PFAM: glycosyltransferase sugar-binding region containing DXD motif; KEGG: bfr:BF3652 putative glycosyltransferase YP_005686684.1 PFAM: Radical SAM domain protein; KEGG: dhd:Dhaf_4173 radical SAM domain protein YP_005686685.1 PFAM: Radical SAM domain protein; KEGG: dhd:Dhaf_4172 radical SAM domain protein YP_005686686.1 KEGG: dhd:Dhaf_4175 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_005686687.1 PFAM: glycosyl transferase group 1; KEGG: ppd:Ppro_3344 glycosyl transferase, group 1 YP_005686688.1 TIGRFAM: methyltransferase FkbM family; KEGG: cbk:CLL_A2332 putative methyltransferase FkbM family YP_005686689.1 PFAM: Radical SAM domain protein; KEGG: dhd:Dhaf_4173 radical SAM domain protein YP_005686690.1 PFAM: glycosyl transferase family 2; KEGG: dhd:Dhaf_4180 glycosyl transferase family 2 YP_005686691.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: mst:Msp_0537 nucleoside-diphosphate-sugar epimerase YP_005686692.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: gem:GM21_3400 DegT/DnrJ/EryC1/StrS aminotransferase YP_005686693.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: mar:MAE_10920 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_005686694.1 KEGG: cbk:CLL_A2337 CDP-glucose 4,6-dehydratase; TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_005686695.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; KEGG: cbk:CLL_A2338 glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase YP_005686696.1 KEGG: pfh:PFHG_02073 conserved hypothetical protein YP_005686697.1 PFAM: transposase mutator type; KEGG: tpd:Teth39_2032 transposase, mutator type YP_005686698.1 KEGG: str:Sterm_3131 hypothetical protein YP_005686699.1 KEGG: dsy:DSY2850 hypothetical protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB YP_005686700.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbb:CLD_0184 cupin domain-containing protein YP_005686701.1 KEGG: dhd:Dhaf_4247 hypothetical protein YP_005686702.1 KEGG: cpy:Cphy_0899 hypothetical protein YP_005686703.1 KEGG: mba:Mbar_A0792 acetyltransferase YP_005686704.1 KEGG: smf:Smon_0610 hypothetical protein YP_005686705.1 KEGG: tde:TDE1630 hypothetical protein YP_005686706.1 KEGG: dsy:DSY3395 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_005686707.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dhd:Dhaf_4556 binding-protein-dependent transport systems inner membrane component YP_005686708.1 KEGG: cce:Ccel_0878 hypothetical protein YP_005686709.1 KEGG: afl:Aflv_1549 hypothetical protein YP_005686710.1 PFAM: adenylate cyclase; KEGG: dds:Ddes_1849 adenylate cyclase YP_005686711.1 KEGG: hmo:HM1_0233 exopolyphosphatase, putative; PFAM: Ppx/GppA phosphatase; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_005686712.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: drm:Dred_2674 iron-containing alcohol dehydrogenase YP_005686713.1 TIGRFAM: phosphodiesterase, MJ0936 family; KEGG: dau:Daud_0456 phosphodiesterase YP_005686714.1 TIGRFAM: dihydropteroate synthase; KEGG: tjr:TherJR_0210 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_005686715.1 SMART: dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; KEGG: amt:Amet_2162 dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase YP_005686716.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; KEGG: tmt:Tmath_1994 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_005686717.1 KEGG: cce:Ccel_0133 hypothetical protein YP_005686718.1 KEGG: cce:Ccel_0134 biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein YP_005686719.1 PFAM: amidohydrolase 2; KEGG: csc:Csac_1139 amidohydrolase 2 YP_005686720.1 KEGG: cce:Ccel_0135 hypothetical protein YP_005686721.1 TIGRFAM: transcriptional activator, Baf family; KEGG: cce:Ccel_0136 pantothenate kinase; PFAM: Bvg accessory factor YP_005686722.1 KEGG: noc:Noc_1953 hypothetical protein YP_005686723.1 KEGG: bpu:BPUM_1560 glycoside hydrolase; PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; Dockerin type 1; SMART: glycoside hydrolase family 10 YP_005686724.1 KEGG: mru:mru_0930 hypothetical protein YP_005686725.1 KEGG: psl:Psta_2458 hypothetical protein YP_005686726.1 KEGG: cce:Ccel_0255 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein YP_005686727.1 PFAM: zinc/iron permease; KEGG: cce:Ccel_0256 zinc/iron permease YP_005686728.1 KEGG: tte:TTE0145 putative translation factor (SUA5); TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SUA5 domain-containing protein YP_005686729.1 KEGG: cce:Ccel_0258 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_005686730.1 TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; KEGG: cce:Ccel_0259 sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase YP_005686731.1 KEGG: cce:Ccel_0260 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_005686732.1 KEGG: cce:Ccel_0261 CMP/dCMP deaminase zinc-binding; manually curated; PFAM: CMP/dCMP deaminase zinc-binding YP_005686733.1 PFAM: Glycosyl transferase, family 4, conserved region; KEGG: cce:Ccel_0262 UDP-N-acetylglucosamine 2-epimerase YP_005686734.1 TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: cce:Ccel_0262 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_005686735.1 KEGG: cce:Ccel_0266 F0F1 ATP synthase subunit A; TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit YP_005686736.1 KEGG: cce:Ccel_0267 ATP synthase F0, C subunit; TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit YP_005686737.1 KEGG: cce:Ccel_0268 ATP synthase F0, B subunit; TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit YP_005686738.1 KEGG: cce:Ccel_0269 ATP synthase F1, delta subunit; TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit YP_005686739.1 KEGG: cce:Ccel_0270 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein YP_005686740.1 KEGG: cce:Ccel_0271 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit YP_005686741.1 TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: cce:Ccel_0272 F0F1 ATP synthase subunit beta; SMART: AAA ATPase YP_005686742.1 KEGG: cce:Ccel_0273 ATP synthase F1, epsilon subunit; TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit-like YP_005686743.1 KEGG: rle:RL1102 hypothetical protein YP_005686744.1 KEGG: cce:Ccel_0276 fibronectin, type III; PFAM: S-layer domain-containing protein; SMART: Fibronectin type III domain protein YP_005686745.1 KEGG: cce:Ccel_0277 fibronectin type III domain protein YP_005686746.1 PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0278 S-layer domain protein YP_005686747.1 PFAM: protein of unknown function DUF1779; KEGG: cce:Ccel_0279 protein of unknown function DUF1779 YP_005686748.1 KEGG: cce:Ccel_0280 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_005686749.1 KEGG: cce:Ccel_0281 stage II sporulation protein D; TIGRFAM: stage II sporulation protein D; SpoIID/LytB domain protein; PFAM: Stage II sporulation protein D YP_005686750.1 PFAM: Peptidase M23; KEGG: amt:Amet_0360 peptidase M23B YP_005686751.1 TIGRFAM: sporulation transcriptional regulator SpoIIID; KEGG: cpy:Cphy_0210 sporulation transcriptional regulator SpoIIID YP_005686752.1 KEGG: cce:Ccel_3102 rod shape-determining protein Mbl; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl YP_005686753.1 KEGG: cce:Ccel_3101 protein of unknown function DUF1078 domain protein; TIGRFAM: flagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_005686754.1 KEGG: cce:Ccel_3100 protein of unknown function DUF1078 domain protein; TIGRFAM: flagellar hook-basal body protein; flagellar basal-body rod protein FlgG; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_005686755.1 PFAM: Flagellar protein FlgJ-like; KEGG: cce:Ccel_3099 hypothetical protein YP_005686756.1 KEGG: cce:Ccel_3098 exopolysaccharide biosynthesis protein YP_005686757.1 KEGG: bth:BT_1466 ABC transporter ATP-binding protein YP_005686758.1 KEGG: cce:Ccel_3097 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_005686759.1 KEGG: cce:Ccel_3096 UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_005686760.1 KEGG: cce:Ccel_3095 pur operon repressor; TIGRFAM: pur operon repressor; PFAM: purine repressor ; phosphoribosyltransferase YP_005686761.1 PFAM: SpoVG family protein; KEGG: clj:CLJU_c41790 putative stage V sporulation protein G YP_005686762.1 KEGG: tte:TTE2572 N-acetylglucosamine-1-phosphate uridyltransferase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein YP_005686763.1 TIGRFAM: ribose-phosphate pyrophosphokinase; KEGG: cce:Ccel_3092 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_005686764.1 TIGRFAM: peptidyl-tRNA hydrolase; KEGG: cce:Ccel_3091 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase YP_005686765.1 TIGRFAM: transcription-repair coupling factor; PFAM: TRCF domain protein; transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG: cce:Ccel_3090 transcription-repair coupling factor; SMART: DEAD-like helicase ; helicase domain protein YP_005686766.1 KEGG: cce:Ccel_3089 PpiC-type peptidyl-prolyl cis-trans isomerase YP_005686767.1 KEGG: geo:Geob_1163 transcriptional regulator, AraC family YP_005686768.1 KEGG: geo:Geob_1163 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_005686769.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: geo:Geob_1162 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_005686770.1 KEGG: cdf:CD1499 putative membrane protein (virulence factor (MviN) homologue); TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein YP_005686771.1 PFAM: glycosyl transferase group 1; KEGG: tye:THEYE_A0425 glycosyl transferase, group 1 YP_005686772.1 PFAM: O-antigen polymerase; KEGG: nam:NAMH_1715 O-antigen polymerase family YP_005686773.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: tnp:Tnap_0416 acylneuraminate cytidylyltransferase YP_005686774.1 TIGRFAM: UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing; KEGG: hor:Hore_16940 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_005686775.1 TIGRFAM: N-acetylneuraminate synthase; KEGG: pmx:PERMA_1627 N-acetylneuraminate synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein YP_005686776.1 TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; KEGG: ckr:CKR_2187 hypothetical protein YP_005686777.1 PFAM: Nucleotidyl transferase; CBS domain containing protein; KEGG: cbt:CLH_1461 nucleotidyl transferase YP_005686778.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: cbt:CLH_1450 DegT/DnrJ/EryC1/StrS aminotransferase YP_005686779.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: cbt:CLH_1449 NAD-dependent epimerase/dehydratase YP_005686780.1 PFAM: Capsule polysaccharide biosynthesis protein; KEGG: syg:sync_0184 hypothetical protein YP_005686781.1 PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; KEGG: pmo:Pmob_1700 carbamoyl-phosphate synthase, large subunit YP_005686782.1 PFAM: sugar transferase; KEGG: dtu:Dtur_0890 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_005686783.1 PFAM: HpcH/HpaI aldolase; KEGG: mvn:Mevan_0407 HpcH/HpaI aldolase YP_005686784.1 PFAM: polysaccharide biosynthesis protein CapD; KEGG: cbf:CLI_3168 exopolysaccharide biosynthesis protein YP_005686785.1 KEGG: cbk:CLL_A0963 hypothetical protein YP_005686786.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: dae:Dtox_4108 lipopolysaccharide biosynthesis protein YP_005686787.1 KEGG: clj:CLJU_c05160 putative exopolysaccharide biosynthesis protein; TIGRFAM: capsular exopolysaccharide family YP_005686788.1 KEGG: sca:Sca_0832 putative phosphotyrosine-protein phosphatase (capsular polysaccharide biosynthesis); PFAM: PHP domain protein YP_005686789.1 KEGG: cce:Ccel_3088 transcriptional regulator, AbrB family; TIGRFAM: stage V sporulation protein T; transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain-containing protein YP_005686790.1 KEGG: cce:Ccel_3086 MazG family protein; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase YP_005686791.1 KEGG: tpd:Teth39_0249 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_005686792.1 KEGG: cce:Ccel_3084 RNA-binding S4 domain protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_005686793.1 KEGG: cce:Ccel_3083 sporulation protein YabP; TIGRFAM: sporulation protein YabP; PFAM: YabP family protein YP_005686794.1 KEGG: cce:Ccel_3082 hypothetical protein; TIGRFAM: spore cortex biosynthesis protein YabQ; PFAM: Spore cortex biosynthesis protein, YabQ-like YP_005686795.1 PFAM: Septum formation initiator; KEGG: cce:Ccel_3081 septum formation initiator YP_005686796.1 PFAM: RNA binding S1 domain protein; KEGG: cce:Ccel_3080 RNA binding S1 domain protein YP_005686797.1 KEGG: cce:Ccel_2179 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_005686798.1 PFAM: ABC-1 domain-containing protein; KEGG: ckr:CKR_3068 hypothetical protein YP_005686799.1 KEGG: amt:Amet_0451 Zn-finger containing protein YP_005686800.1 KEGG: cpy:Cphy_0632 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase YP_005686801.1 PFAM: regulatory protein TetR; KEGG: bse:Bsel_0940 transcriptional regulator, TetR family YP_005686802.1 KEGG: cby:CLM_0713 putative lipoprotein YP_005686804.1 KEGG: sli:Slin_3195 hydrolase YP_005686805.1 KEGG: sdn:Sden_1920 hypothetical protein YP_005686806.1 PFAM: Ribosomal protein L7/L12; KEGG: cbt:CLH_1966 hypothetical protein YP_005686807.1 KEGG: btl:BALH_1793 hypothetical protein YP_005686808.1 KEGG: fno:Fnod_1549 major facilitator transporter YP_005686809.1 PFAM: GumN family protein; KEGG: lsp:Bsph_4539 hypothetical protein YP_005686810.1 KEGG: cbk:CLL_A1984 hypothetical protein YP_005686811.1 KEGG: cpi:Cpin_0594 hypothetical protein YP_005686812.1 KEGG: cpy:Cphy_1188 peptidase S41; PFAM: peptidase S41; Tetratricopeptide TPR_1 repeat-containing protein; SMART: peptidase S41; Tetratricopeptide repeat YP_005686813.1 SMART: protein phosphatase 2C domain protein; TIGRFAM: stage II sporulation protein E; KEGG: cce:Ccel_2986 stage II sporulation protein E, protein serine/threonine phosphatase; PFAM: Stage II sporulation protein E YP_005686814.1 KEGG: cce:Ccel_2985 hypothetical protein YP_005686815.1 KEGG: cce:Ccel_2984 hypothetical protein YP_005686816.1 KEGG: cbf:CLI_2709 hypothetical protein; manually curated; PFAM: type IV pilus assembly PilZ YP_005686817.1 manually curated; TIGRFAM: TIM-barrel protein, nifR3 family; KEGG: cce:Ccel_2942 TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS YP_005686818.1 KEGG: cno:NT01CX_1603 fimbrial assembly protein, putative; TIGRFAM: type IV pilus assembly protein PilM; PFAM: cell division protein FtsA YP_005686819.1 PFAM: thioesterase superfamily protein; KEGG: tjr:TherJR_0944 thioesterase superfamily protein YP_005686820.1 KEGG: cce:Ccel_2939 stage V sporulation protein B; TIGRFAM: stage V sporulation protein B; PFAM: polysaccharide biosynthesis protein YP_005686821.1 KEGG: pfh:PFHG_04637 conserved hypothetical protein YP_005686822.1 KEGG: amt:Amet_3155 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH YP_005686823.1 PFAM: UbiA prenyltransferase; KEGG: tjr:TherJR_2839 UbiA prenyltransferase YP_005686824.1 KEGG: mac:MA2174 galactoside O-acetyltransferase YP_005686825.1 PFAM: glycosyl transferase group 1; KEGG: hmo:HM1_1179 glycosyltransferase, group 1 family protein, putative YP_005686826.1 KEGG: sth:STH1099 hypothetical protein YP_005686827.1 PFAM: O-antigen polymerase; KEGG: dae:Dtox_4116 O-antigen polymerase YP_005686828.1 KEGG: cce:Ccel_2928 hypothetical protein YP_005686829.1 KEGG: tjr:TherJR_0655 carbohydrate kinase, YjeF related protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain-containing protein YP_005686830.1 TIGRFAM: alanine racemase; KEGG: cce:Ccel_2926 alanine racemase; PFAM: alanine racemase domain protein YP_005686831.1 KEGG: cce:Ccel_2925 putative transcriptional regulator, CopG family YP_005686832.1 PFAM: PemK family protein; KEGG: tte:TTE2166 growth inhibitor YP_005686833.1 KEGG: amt:Amet_4142 hypothetical protein YP_005686834.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; KEGG: cce:Ccel_2921 glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF YP_005686835.1 KEGG: cce:Ccel_2883 polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB; PFAM: glycosyl transferase group 1 YP_005686836.1 PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: cce:Ccel_2920 protein of unknown function DUF161 YP_005686837.1 PFAM: Transketolase domain-containing protein; KEGG: tjr:TherJR_2765 transketolase domain protein YP_005686838.1 PFAM: Transketolase central region; Transketolase domain-containing protein; KEGG: cbt:CLH_3106 transketolase, pyridine binding domain YP_005686839.1 KEGG: cce:Ccel_0295 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_005686840.1 KEGG: cce:Ccel_0296 ABC-2 type transporter YP_005686841.1 PFAM: ABC-type uncharacterised transport system; KEGG: cce:Ccel_0297 hypothetical protein YP_005686842.1 KEGG: cce:Ccel_0298 hypothetical protein YP_005686843.1 KEGG: cce:Ccel_0299 hypothetical protein YP_005686844.1 KEGG: cce:Ccel_0300 hypothetical protein YP_005686845.1 PFAM: Colicin V production protein; KEGG: cce:Ccel_0301 hypothetical protein YP_005686846.1 TIGRFAM: dihydroxy-acid dehydratase; KEGG: cce:Ccel_0302 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_005686847.1 KEGG: cce:Ccel_0303 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein YP_005686848.1 KEGG: cac:CA_C3151 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33 YP_005686849.1 KEGG: cce:Ccel_0306 preprotein translocase, SecE subunit; TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein YP_005686850.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain-containing protein; KOW domain protein; KEGG: cce:Ccel_0307 NusG antitermination factor; SMART: NGN domain-containing protein; KOW domain protein YP_005686851.1 TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11-like; KEGG: cce:Ccel_0308 50S ribosomal protein L11; SMART: ribosomal protein L11 YP_005686852.1 KEGG: cce:Ccel_0309 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1 YP_005686853.1 PFAM: ribosomal protein L10; KEGG: cce:Ccel_0310 ribosomal protein L10 YP_005686854.1 KEGG: cce:Ccel_0311 ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12 YP_005686855.1 KEGG: cce:Ccel_0312 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 2; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 7; RNA polymerase beta subunit; DNA-directed RNA polymerase, beta subunit, external 1 domain YP_005686856.1 TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; KEGG: cce:Ccel_0313 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase I subunit A domain protein YP_005686857.1 PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: cce:Ccel_0314 ribosomal protein L7Ae/L30e/S12e/Gadd45 YP_005686858.1 KEGG: cce:Ccel_0315 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23 YP_005686859.1 KEGG: tjr:TherJR_0292 ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7 YP_005686860.1 KEGG: cce:Ccel_0317 elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein YP_005686861.1 KEGG: cce:Ccel_0318 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein YP_005686862.1 KEGG: cce:Ccel_0803 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_005686863.1 KEGG: cce:Ccel_0804 hypothetical protein YP_005686864.1 KEGG: cce:Ccel_0130 hypothetical protein YP_005686865.1 PFAM: VanW family protein; KEGG: slp:Slip_1010 VanW family protein YP_005686866.1 KEGG: cce:Ccel_0806 phosphocarrier, HPr family; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr YP_005686867.1 KEGG: tte:TTE2334 phosphoenolpyruvate-protein kinase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region YP_005686868.1 TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; KEGG: cce:Ccel_0807 excinuclease ABC subunit C; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1 YP_005686869.1 PFAM: metallophosphoesterase; KEGG: cce:Ccel_0808 metallophosphoesterase YP_005686870.1 KEGG: cce:Ccel_0809 trigger factor; TIGRFAM: trigger factor; PFAM: trigger factor domain-containing protein; peptidylprolyl isomerase FKBP-type YP_005686871.1 TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; KEGG: cce:Ccel_0810 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14 ClpP YP_005686872.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; KEGG: cce:Ccel_0811 ATP-dependent protease ATP-binding subunit ClpX; SMART: AAA ATPase YP_005686873.1 SMART: AAA ATPase; TIGRFAM: ATP-dependent protease LonB; KEGG: cce:Ccel_0812 sigma 54 interacting domain protein; PFAM: AAA ATPase central domain protein YP_005686874.1 TIGRFAM: metalloendopeptidase, glycoprotease family; KEGG: cce:Ccel_0814 putative DNA-binding/iron metalloprotein/AP endonuclease; PFAM: peptidase M22 glycoprotease YP_005686875.1 PFAM: Lytic transglycosylase catalytic; KEGG: cce:Ccel_0815 lytic transglycosylase catalytic YP_005686876.1 KEGG: cce:Ccel_0816 hypothetical protein YP_005686877.1 PFAM: protein of unknown function DUF402; KEGG: cce:Ccel_0817 protein of unknown function DUF402 YP_005686878.1 KEGG: cce:Ccel_0818 PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein YP_005686879.1 KEGG: cce:Ccel_0819 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein YP_005686880.1 KEGG: bpf:BpOF4_17620 hypothetical protein YP_005686881.1 KEGG: lwe:lwe1722 hypothetical protein YP_005686882.1 KEGG: rno:294429 RAN binding protein 2 YP_005686883.1 KEGG: ctc:CTC01364 hypothetical protein YP_005686884.1 KEGG: dhd:Dhaf_1136 hypothetical protein YP_005686885.1 KEGG: amt:Amet_3852 beta-lactamase domain-containing protein YP_005686886.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: amr:AM1_0005 ADP-ribosylglycohydrolase YP_005686887.1 PFAM: sodium/hydrogen exchanger; TrkA-C domain protein; KEGG: fma:FMG_0030 potassium/proton antiporter YP_005686888.1 PFAM: DNA polymerase beta domain protein region; KEGG: smb:smi_1712 nucleotidyltransferase YP_005686889.1 KEGG: pth:PTH_1521 hypothetical protein; PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_005686890.1 PFAM: glycoside hydrolase family 9; Dockerin type 1; type 3a cellulose-binding domain protein; KEGG: cce:Ccel_1648 glycoside hydrolase family 9 YP_005686891.1 PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; Dockerin type 1; KEGG: cce:Ccel_1249 glycoside hydrolase family 9 YP_005686892.1 manually curated; KEGG: cbe:Cbei_3559 transcriptional regulator-like protein YP_005686893.1 manually curated; KEGG: cbe:Cbei_3558 hypothetical protein YP_005686894.1 KEGG: cbe:Cbei_3557 TROVE domain-containing protein; manually curated; PFAM: TROVE domain-containing protein YP_005686895.1 KEGG: bbe:BBR47_03130 hypothetical protein YP_005686896.1 KEGG: cai:Caci_3518 hypothetical protein YP_005686897.1 PFAM: Methyltransferase type 12; KEGG: ana:alr3730 hypothetical protein YP_005686898.1 PFAM: metallophosphoesterase; KEGG: aba:Acid345_1977 metallophosphoesterase YP_005686899.1 KEGG: aoe:Clos_2425 hypothetical protein; TIGRFAM: iron-sulfur cluster repair di-iron protein; PFAM: protein of unknown function DUF542 ScdA domain protein; Hemerythrin HHE cation binding domain protein YP_005686900.1 KEGG: amt:Amet_3723 beta-lactamase domain-containing protein; PFAM: flavodoxin/nitric oxide synthase; SMART: beta-lactamase domain protein YP_005686901.1 KEGG: aoe:Clos_2178 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp YP_005686902.1 KEGG: pph:Ppha_0457 rod shape-determining protein RodA YP_005686904.1 KEGG: ctc:CTC00666 hypothetical protein YP_005686905.1 KEGG: bhy:BHWA1_02422 nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC YP_005686906.1 KEGG: bhy:BHWA1_02421 nicotinamide-nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_005686907.1 KEGG: shi:Shel_21970 hypothetical protein YP_005686909.1 PFAM: Domain of unknown function DUF1801; KEGG: rci:RCIX1712 hypothetical protein YP_005686910.1 KEGG: cbk:CLL_A0963 hypothetical protein YP_005686911.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; S-layer domain-containing protein; KEGG: swo:Swol_1062 negative regulator of beta-lactamase expression-like protein YP_005686912.1 PFAM: Protein of unknown function DUF2292; KEGG: clj:CLJU_c23500 hypothetical protein YP_005686913.1 PFAM: cobalamin B12-binding domain protein; Methionine synthase B12-binding module cap domain protein; KEGG: geo:Geob_2541 cobalamin B12-binding domain protein YP_005686914.1 KEGG: geo:Geob_2542 uroporphyrinogen decarboxylase (URO-D); TIGRFAM: methyltransferase MtaA/CmuA family; PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_005686915.1 KEGG: geo:Geob_2543 methylcobalamin:coenzyme M methyltransferase; TIGRFAM: methyltransferase MtaA/CmuA family; PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_005686916.1 PFAM: ferredoxin; KEGG: geo:Geob_2544 ferredoxin YP_005686917.1 PFAM: protein of unknown function DUF1847; KEGG: dhd:Dhaf_4575 protein of unknown function DUF1847 YP_005686918.1 KEGG: geo:Geob_2534 extracellular solute-binding protein family 3 YP_005686919.1 KEGG: mbn:Mboo_0164 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_005686920.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: geo:Geob_2535 binding-protein-dependent transport systems inner membrane component YP_005686921.1 KEGG: fma:FMG_0215 coenzyme F390 synthetase; PFAM: AMP-dependent synthetase and ligase YP_005686922.1 PFAM: aminotransferase class I and II; KEGG: eel:EUBELI_20597 hypothetical protein YP_005686923.1 KEGG: ele:Elen_0416 pyruvate/ketoisovalerate oxidoreductase, gamma subunit; TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain YP_005686924.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; KEGG: ccu:Ccur_08380 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family/2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family YP_005686925.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain-containing protein; KEGG: fma:FMG_0217 pyruvate/ferredoxin oxidoreductase alpha subunit YP_005686926.1 PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: ele:Elen_0418 thiamine pyrophosphate protein domain protein TPP-binding YP_005686927.1 KEGG: fpl:Ferp_0140 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_005686928.1 KEGG: eel:EUBELI_01818 TdcF protein; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP YP_005686929.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: amt:Amet_3707 cystathionine gamma-synthase YP_005686930.1 PFAM: aminotransferase class I and II; KEGG: kol:Kole_0146 aminotransferase class I and II YP_005686931.1 TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; KEGG: cce:Ccel_0438 carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane YP_005686932.1 SMART: extracellular solute-binding protein family 3; KEGG: cce:Ccel_0437 extracellular solute-binding protein family 3 YP_005686933.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bse:Bsel_2699 binding-protein-dependent transport systems inner membrane component YP_005686934.1 KEGG: cce:Ccel_0435 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_005686935.1 KEGG: cce:Ccel_0881 carbohydrate-binding, CenC-like protein YP_005686936.1 PFAM: glycoside hydrolase family 5; KEGG: ttr:Tter_2195 glycoside hydrolase family 5 YP_005686937.1 KEGG: tmt:Tmath_0383 transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_005686938.1 KEGG: pjd:Pjdr2_0951 licheninase; PFAM: glycoside hydrolase family 16; Carbohydrate-binding CenC domain protein; S-layer domain-containing protein YP_005686939.1 KEGG: cpy:Cphy_2825 Na/Pi-cotransporter II-related protein; TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein YP_005686940.1 PFAM: Dockerin type 1; KEGG: cce:Ccel_0752 glycoside hydrolase family 26 YP_005686941.1 PFAM: glycoside hydrolase family 9; Dockerin type 1; KEGG: cce:Ccel_0753 glycoside hydrolase family 9 YP_005686942.1 KEGG: dhd:Dhaf_2940 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_005686943.1 KEGG: ctc:CTC02155 sensory transduction protein kinase; PFAM: histidine kinase A domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase A domain protein; ATP-binding region ATPase domain protein YP_005686944.1 TIGRFAM: lysyl-tRNA synthetase; KEGG: bcg:BCG9842_B2757 lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase, class Ic YP_005686945.1 KEGG: cbe:Cbei_4184 putative CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_005686946.1 KEGG: cbe:Cbei_4183 CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein YP_005686947.1 KEGG: cbe:Cbei_4182 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_005686948.1 PFAM: MCP methyltransferase CheR-type; KEGG: cbe:Cbei_4181 protein-glutamate O-methyltransferase; SMART: MCP methyltransferase CheR-type YP_005686949.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: cbe:Cbei_4180 response regulator receiver modulated CheB methylesterase; SMART: response regulator receiver YP_005686950.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_3898 oxidoreductase domain-containing protein YP_005686951.1 KEGG: cce:Ccel_0252 protein of unknown function DUF21; PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein YP_005686952.1 PFAM: TipAS antibiotic-recognition domain-containing protein; KEGG: cce:Ccel_1781 transcriptional regulator, MerR family YP_005686953.1 PFAM: glycoside hydrolase family 5; Dockerin type 1; KEGG: cce:Ccel_0740 glycoside hydrolase family 5 YP_005686954.1 PFAM: Protein of unknown function DUF3592; KEGG: cyc:PCC7424_4056 hypothetical protein YP_005686955.1 KEGG: cce:Ccel_0212 phosphoenolpyruvate carboxykinase; PFAM: phosphoenolpyruvate carboxykinase (GTP) YP_005686956.1 KEGG: cce:Ccel_0370 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA YP_005686957.1 KEGG: cce:Ccel_0373 ATP-dependent DNA helicase PcrA; TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase YP_005686958.1 PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0039 S-layer domain protein YP_005686959.1 PFAM: peptidase C39 bacteriocin processing; KEGG: rba:RB5722 hypothetical protein YP_005686960.1 PFAM: Dockerin type 1; KEGG: scl:sce4860 hypothetical protein YP_005686961.1 TIGRFAM: histidyl-tRNA synthetase 2; KEGG: cce:Ccel_0380 histidyl-tRNA synthetase 2; PFAM: tRNA synthetase class II (G H P and S) YP_005686962.1 TIGRFAM: ATP phosphoribosyltransferase; KEGG: cce:Ccel_0381 ATP phosphoribosyltransferase catalytic subunit; PFAM: ATP phosphoribosyltransferase catalytic region YP_005686963.1 TIGRFAM: histidinol dehydrogenase; KEGG: tmt:Tmath_1798 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase YP_005686964.1 KEGG: cce:Ccel_0383 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II YP_005686965.1 KEGG: tte:TTE2136 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase YP_005686966.1 TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: cce:Ccel_0385 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase YP_005686967.1 KEGG: cce:Ccel_0386 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I YP_005686968.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: cce:Ccel_0387 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: histidine biosynthesis protein YP_005686969.1 KEGG: cce:Ccel_0388 imidazole glycerol phosphate synthase subunit HisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein YP_005686970.1 KEGG: cce:Ccel_0389 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase-like YP_005686971.1 PFAM: AAA-4 family protein; KEGG: csc:Csac_0945 putative transcriptional regulator YP_005686972.1 PFAM: Chaperonin Cpn10; KEGG: cce:Ccel_0391 co-chaperonin GroES YP_005686973.1 KEGG: cce:Ccel_0392 chaperonin GroEL; TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1 YP_005686974.1 PFAM: type IV pilus assembly PilZ; KEGG: chy:CHY_1012 putative flagellar protein YP_005686975.1 KEGG: tte:TTE1989 hypothetical protein YP_005686976.1 KEGG: nth:Nther_0489 glycoside hydrolase family 18; PFAM: glycoside hydrolase family 18; copper amine oxidase-like domain-containing protein; SMART: chitinase II YP_005686977.1 KEGG: tpd:Teth39_0316 shikimate/quinate 5-dehydrogenase YP_005686978.1 KEGG: cce:Ccel_0395 transcription elongation factor GreA; TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain-containing protein YP_005686979.1 KEGG: ate:Athe_0435 anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS YP_005686980.1 KEGG: cce:Ccel_0399 putative anti-sigma regulatory factor, serine/threonine protein kinase YP_005686981.1 KEGG: ate:Athe_0437 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein YP_005686982.1 PFAM: ATP-binding region ATPase domain protein; KEGG: ate:Athe_2394 putative anti-sigma regulatory factor, serine/threonine protein kinase YP_005686984.1 KEGG: cce:Ccel_0757 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10 YP_005686985.1 KEGG: cce:Ccel_0758 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3 YP_005686986.1 PFAM: ribosomal protein L4/L1e; KEGG: cce:Ccel_0759 50S ribosomal protein L4 YP_005686987.1 PFAM: Ribosomal protein L25/L23; KEGG: cce:Ccel_0760 50S ribosomal protein L23 YP_005686988.1 KEGG: tte:TTE2290 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2 YP_005686989.1 KEGG: tjr:TherJR_0300 ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15 YP_005686990.1 KEGG: cce:Ccel_0763 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17 YP_005686991.1 TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; KEGG: cce:Ccel_0764 ribosomal protein S3; SMART: KH domain protein YP_005686992.1 KEGG: cce:Ccel_0765 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L10e/L16 YP_005686993.1 KEGG: cce:Ccel_0766 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29 YP_005686994.1 KEGG: cce:Ccel_0767 ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17 YP_005686995.1 KEGG: cce:Ccel_0768 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e YP_005686996.1 TIGRFAM: ribosomal protein L24; KEGG: cce:Ccel_0769 50S ribosomal protein L24 YP_005686997.1 KEGG: cce:Ccel_0770 50S ribosomal protein L5 YP_005686998.1 KEGG: cce:Ccel_0771 30S ribosomal protein S14; manually curated; PFAM: ribosomal protein S14 YP_005686999.1 PFAM: ribosomal protein S8; KEGG: cce:Ccel_0772 30S ribosomal protein S8 YP_005687000.1 KEGG: cce:Ccel_0773 ribosomal protein L6 signature 1; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain YP_005687001.1 KEGG: cce:Ccel_0774 ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E YP_005687002.1 KEGG: cce:Ccel_0775 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5 YP_005687003.1 KEGG: cce:Ccel_0776 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30 YP_005687004.1 TIGRFAM: ribosomal protein L15; KEGG: cce:Ccel_0777 50S ribosomal protein L15 YP_005687005.1 KEGG: cce:Ccel_0778 preprotein translocase, SecY subunit; TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein YP_005687006.1 KEGG: ate:Athe_1725 adenylate kinase; TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain-containing protein YP_005687007.1 KEGG: tte:TTE2270 methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24 YP_005687008.1 KEGG: tpd:Teth39_0396 hypothetical protein YP_005687009.1 KEGG: cce:Ccel_0782 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein YP_005687010.1 KEGG: adg:Adeg_1500 ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36 YP_005687011.1 KEGG: tjr:TherJR_0321 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13 YP_005687012.1 KEGG: cce:Ccel_0785 30S ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11 YP_005687013.1 TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: cce:Ccel_0786 ribosomal protein S4; SMART: RNA-binding S4 domain protein YP_005687014.1 TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; KEGG: cce:Ccel_0787 DNA-directed RNA polymerase subunit alpha; SMART: RNA polymerase RpoA/D/Rpb3-type YP_005687015.1 KEGG: cce:Ccel_0788 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17 YP_005687016.1 KEGG: cce:Ccel_0789 ABC transporter related; PFAM: Cobalt ATP-binding cassette-like; ABC transporter related; SMART: AAA ATPase YP_005687017.1 PFAM: methyltransferase small; KEGG: gwc:GWCH70_0102 methyltransferase small YP_005687018.1 PFAM: type III restriction protein res subunit; KEGG: afl:Aflv_1175 predicted type III restriction-modification enzyme, helicase subunit fused to restriction endonuclease-like domain YP_005687019.1 PFAM: protein of unknown function DUF55; KEGG: btb:BMB171_C4699 hypothetical protein YP_005687020.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sli:Slin_6680 DNA methylase N-4/N-6 domain protein YP_005687021.1 KEGG: slp:Slip_0085 hypothetical protein YP_005687022.1 SMART: regulatory protein DeoR; KEGG: slp:Slip_1135 regulatory protein DeoR YP_005687023.1 KEGG: tmt:Tmath_1504 transcriptional regulator, LuxR family YP_005687024.1 KEGG: slp:Slip_1133 hypothetical protein YP_005687025.1 PFAM: copper amine oxidase-like domain-containing protein; glycoside hydrolase family 18; KEGG: slp:Slip_1942 copper amine oxidase domain protein YP_005687026.1 KEGG: slp:Slip_0079 resolvase domain protein; PFAM: Resolvase domain; Recombinase; SMART: Resolvase domain YP_005687027.1 KEGG: amt:Amet_4446 cobalt transporter ATP-binding subunit; PFAM: ABC transporter related; Cobalt ATP-binding cassette-like; SMART: AAA ATPase YP_005687028.1 PFAM: cobalt transport protein; KEGG: cce:Ccel_0792 cobalt transport protein YP_005687029.1 KEGG: ate:Athe_0552 glucokinase, ROK family; TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; ATPase BadF/BadG/BcrA/BcrD type YP_005687030.1 KEGG: cce:Ccel_0793 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain YP_005687031.1 PFAM: transcription factor CarD; KEGG: cce:Ccel_0340 transcriptional regulator, CarD family YP_005687032.1 KEGG: cce:Ccel_0342 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_005687033.1 KEGG: tex:Teth514_0363 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_005687034.1 PFAM: ABC-2 type transporter; KEGG: tte:TTE0411 ABC-type Na+ efflux pump, permease component YP_005687035.1 KEGG: cce:Ccel_2145 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_005687036.1 KEGG: cce:Ccel_2145 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_005687037.1 TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; KEGG: cce:Ccel_0344 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase YP_005687038.1 KEGG: tte:TTE2319 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein YP_005687039.1 KEGG: cce:Ccel_0346 SCP-like extracellular; PFAM: SCP-like extracellular; SH3 type 3 domain protein; SMART: SH3 domain protein YP_005687040.1 PFAM: Pectinesterase; Dockerin type 1; KEGG: cce:Ccel_1246 pectinesterase YP_005687041.1 KEGG: hau:Haur_3461 cellulose-binding family II protein; PFAM: Pectate lyase/Amb allergen; Dockerin type 1; Carbohydrate binding family 6; SMART: Pectate lyase/Amb allergen; cellulose binding type IV YP_005687042.1 KEGG: tra:Trad_0079 hypothetical protein YP_005687043.1 PFAM: IstB domain protein ATP-binding protein; KEGG: dsy:DSY0816 hypothetical protein YP_005687044.1 KEGG: pop:POPTR_567840 pectinesterase family protein YP_005687045.1 manually curated; KEGG: acl:ACL_0441 hypothetical protein YP_005687046.1 KEGG: cce:Ccel_0044 extracellular solute-binding protein family 5; manually curated; PFAM: extracellular solute-binding protein family 5 YP_005687047.1 SMART: AAA ATPase; manually curated; KEGG: cce:Ccel_0045 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein YP_005687048.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: cce:Ccel_0046 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase YP_005687049.1 KEGG: cce:Ccel_0047 binding-protein-dependent transport systems inner membrane component; manually curated; PFAM: binding-protein-dependent transport systems inner membrane component YP_005687050.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0048 binding-protein-dependent transport systems inner membrane component YP_005687051.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: amt:Amet_3565 hypothetical protein YP_005687052.1 KEGG: cpy:Cphy_2115 major facilitator transporter; manually curated; PFAM: major facilitator superfamily MFS_1 YP_005687053.1 KEGG: cac:CA_C2657 polyferredoxin YP_005687054.1 KEGG: dhd:Dhaf_2275 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_005687055.1 KEGG: cpy:Cphy_3904 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_005687056.1 KEGG: ckr:CKR_0333 hypothetical protein YP_005687057.1 KEGG: cce:Ccel_0750 glycoside hydrolase family 11; PFAM: glycoside hydrolase family 11; Carbohydrate binding family 6; Dockerin type 1; polysaccharide deacetylase; SMART: cellulose binding type IV YP_005687058.1 KEGG: cce:Ccel_0750 glycoside hydrolase family 11; PFAM: glycoside hydrolase family 11; Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV YP_005687059.1 KEGG: cbi:CLJ_B0041 sugar fermentation stimulation protein A; TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein YP_005687060.1 KEGG: cce:Ccel_1740 hypothetical protein YP_005687061.1 KEGG: cce:Ccel_1739 putative RNA polymerase sigma factor SigI; TIGRFAM: RNA polymerase sigma-I factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein YP_005687062.1 KEGG: pfh:PFHG_01537 hypothetical protein similar to erythrocyte binding protein YP_005687063.1 KEGG: cdf:CD0629 putative transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp YP_005687064.1 KEGG: cpy:Cphy_0403 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_005687065.1 KEGG: cdl:CDR20291_0550 hypothetical protein YP_005687066.1 KEGG: tmt:Tmath_0357 hypothetical protein YP_005687067.1 KEGG: bba:Bd1237 amino-acid ABC transporter; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_005687068.1 KEGG: aoe:Clos_2519 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_005687069.1 KEGG: dsy:DSY2148 hypothetical protein YP_005687070.1 KEGG: dsy:DSY2149 hypothetical protein YP_005687071.1 manually curated; KEGG: dsy:DSY2150 hypothetical protein YP_005687072.1 KEGG: dfe:Dfer_3408 NAD(P)H dehydrogenase (quinone) YP_005687073.1 KEGG: pkn:PKH_112830 hypothetical protein YP_005687074.1 PFAM: glycosyltransferase 36; KEGG: tnp:Tnap_0603 glycosyltransferase 36 YP_005687075.1 KEGG: cce:Ccel_1379 hypothetical protein YP_005687076.1 TIGRFAM: peptide methionine sulfoxide reductase; KEGG: sth:STH1761 bifunctional methionine sulfoxide reductase A/B protein; PFAM: Methionine sulfoxide reductase A YP_005687077.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tte:TTE2131 NADH:flavin oxidoreductase YP_005687078.1 KEGG: gau:GAU_3915 RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_005687079.1 KEGG: bcy:Bcer98_2217 VanW family protein YP_005687080.1 KEGG: bmd:BMD_3828 hypothetical protein YP_005687081.1 KEGG: aoe:Clos_0866 hypothetical protein YP_005687082.1 KEGG: rca:Rcas_2023 PfpI family intracellular peptidase; TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain-containing protein YP_005687083.1 KEGG: tet:TTHERM_00564400 hypothetical protein YP_005687084.1 KEGG: csc:Csac_1116 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_005687085.1 KEGG: cbe:Cbei_1948 hypothetical protein YP_005687086.1 PFAM: phosphate transporter; KEGG: bln:Blon_1635 phosphate transporter YP_005687087.1 PFAM: Putitive phosphate transport regulator; KEGG: bln:Blon_1634 protein of unknown function DUF47 YP_005687088.1 KEGG: spi:MGAS10750_Spy1726 lantibiotic processing peptidase / lantibiotic transport permease protein / lantibiotic transport ATP-binding protein YP_005687089.1 TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; iron hydrogenase small subunit; KEGG: dhd:Dhaf_2037 hydrogenase, Fe-only; SMART: iron hydrogenase small subunit YP_005687090.1 KEGG: amt:Amet_4134 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM YP_005687091.1 KEGG: aoe:Clos_1944 peptidoglycan-binding LysM; PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM YP_005687092.1 KEGG: bts:Btus_1128 peptidoglycan-binding lysin domain protein; PFAM: Peptidoglycan-binding lysin domain; ErfK/YbiS/YcfS/YnhG family protein; SMART: Peptidoglycan-binding LysM YP_005687093.1 KEGG: cce:Ccel_0690 manganese and iron superoxide dismutase; PFAM: Manganese/iron superoxide dismutase-like YP_005687094.1 KEGG: act:ACLA_088240 heat shock Hsp30-like protein, putative YP_005687095.1 KEGG: bca:BCE_2318 hypothetical protein YP_005687096.1 KEGG: cce:Ccel_1242 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV YP_005687097.1 manually curated; TIGRFAM: hydrogenase expression/formation protein HypE; KEGG: cpy:Cphy_1741 hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_005687098.1 KEGG: cpy:Cphy_1740 hydrogenase formation HypD protein; TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein YP_005687099.1 KEGG: cpy:Cphy_1739 hydrogenase assembly chaperone HypC/HupF; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC) YP_005687100.1 KEGG: cpy:Cphy_1738 (NiFe) hydrogenase maturation protein HypF; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase YP_005687101.1 KEGG: cpy:Cphy_1737 hydrogenase accessory protein HypB; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K YP_005687102.1 PFAM: hydrogenase expression/synthesis HypA; KEGG: cpy:Cphy_1736 hydrogenase expression/synthesis HypA YP_005687103.1 KEGG: cpy:Cphy_1735 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_005687104.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; nickel-dependent hydrogenase large subunit; KEGG: cpy:Cphy_1734 NADH-ubiquinone oxidoreductase chain 49kDa YP_005687105.1 KEGG: cpy:Cphy_1733 ech hydrogenase, subunit EchD, putative YP_005687106.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cpy:Cphy_1732 NADH ubiquinone oxidoreductase 20 kDa subunit YP_005687107.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: cpy:Cphy_1731 respiratory-chain NADH dehydrogenase subunit 1 YP_005687108.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; KEGG: cpy:Cphy_1730 NADH dehydrogenase (quinone) YP_005687109.1 KEGG: cbr:CBG00650 Hypothetical protein CBG00650 YP_005687110.1 PFAM: transcription elongation factor GreA/GreB domain-containing protein; KEGG: pth:PTH_0541 hypothetical protein YP_005687111.1 PFAM: Citrate synthase; KEGG: dae:Dtox_1989 citrate synthase YP_005687112.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: pti:PHATRDRAFT_2217 hypothetical protein YP_005687113.1 KEGG: dae:Dtox_0612 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_005687114.1 KEGG: dae:Dtox_0613 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_005687115.1 KEGG: phu:Phum_PHUM227370 histone H1-II-1, putative YP_005687116.1 KEGG: nca:Noca_3028 hypothetical protein YP_005687117.1 KEGG: sna:Snas_2969 hypothetical protein YP_005687118.1 KEGG: psl:Psta_2458 hypothetical protein YP_005687119.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; KEGG: clj:CLJU_c30610 putative D-isomer specific 2-hydroxyacid dehydrogenase YP_005687120.1 KEGG: cbl:CLK_1454 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer YP_005687121.1 PFAM: nitroreductase; KEGG: cce:Ccel_3427 nitroreductase YP_005687122.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: pjd:Pjdr2_4965 hypothetical protein YP_005687123.1 PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: cce:Ccel_0601 cell divisionFtsK/SpoIIIE YP_005687124.1 PFAM: Protein of unknown function DUF2383; KEGG: aoe:Clos_1705 hypothetical protein YP_005687125.1 PFAM: UbiA prenyltransferase; KEGG: gym:GYMC10_2196 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_005687126.1 KEGG: hor:Hore_08350 hypothetical protein YP_005687127.1 KEGG: csc:Csac_0369 calcium-translocating P-type ATPase, PMCA-type YP_005687128.1 PFAM: protein of unknown function DUF975; KEGG: aoe:Clos_0135 hypothetical protein YP_005687129.1 KEGG: aoe:Clos_2578 FHA domain-containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein YP_005687130.1 PFAM: cell cycle protein; KEGG: aoe:Clos_2577 cell cycle protein YP_005687131.1 KEGG: aoe:Clos_2576 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_005687132.1 KEGG: nde:NIDE2507 DNA repair protein RadC-like protein; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC YP_005687133.1 KEGG: mba:Mbar_A2604 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat YP_005687134.1 KEGG: cbe:Cbei_1606 fibronectin, type III domain-containing protein; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein YP_005687135.1 PFAM: transposase mutator type; KEGG: tpd:Teth39_2032 transposase, mutator type YP_005687136.1 TIGRFAM: YD repeat protein; PFAM: Kelch repeat type 1-containing protein; YD repeat-containing protein; MORN variant repeat-containing protein; KEGG: lmh:LMHCC_2776 YD repeat protein; SMART: Kelch repeat type 1-containing protein YP_005687137.1 KEGG: ava:Ava_1697 hypothetical protein YP_005687138.1 KEGG: ele:Elen_2720 (p)ppGpp synthetase I, SpoT/RelA YP_005687139.1 KEGG: cbb:CLD_2459 hypothetical protein YP_005687140.1 manually curated; KEGG: tdn:Suden_1217 hypothetical protein YP_005687141.1 KEGG: bbe:BBR47_35980 probable RNA 2'-phosphotransferase; manually curated; PFAM: phosphotransferase KptA/Tpt1 YP_005687142.1 manually curated; KEGG: bhy:BHWA1_00897 hypothetical protein YP_005687143.1 KEGG: cbf:CLI_2855 methyl-accepting chemotaxis protein YP_005687144.1 KEGG: bsu:BSU03180 S-deacylase; PFAM: Acetyl xylan esterase YP_005687145.1 PFAM: polysaccharide biosynthesis protein; KEGG: clj:CLJU_c17360 putative stage V sporulation protein B YP_005687146.1 KEGG: dhd:Dhaf_2923 hypothetical protein YP_005687147.1 KEGG: ctc:CTC01493 transporter; PFAM: ABC transporter related; SMART: AAA ATPase YP_005687148.1 KEGG: ctc:CTC01492 membrane spanning protein YP_005687149.1 KEGG: ctc:CTC01491 sensory transduction protein kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_005687150.1 KEGG: dhd:Dhaf_2918 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_005687151.1 KEGG: aoe:Clos_2858 hypothetical protein; TIGRFAM: sporulation protein YyaC; PFAM: protein of unknown function DUF1256 YP_005687152.1 PFAM: protein of unknown function DUF1540; KEGG: cce:Ccel_2311 protein of unknown function DUF1540 YP_005687153.1 PFAM: acyl-ACP thioesterase; KEGG: tjr:TherJR_2397 acyl-ACP thioesterase YP_005687154.1 KEGG: rba:RB10370 putative phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_005687155.1 KEGG: cbk:CLL_A0068 HAD superfamily hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_005687156.1 KEGG: syp:SYNPCC7002_A2872 von Willebrand factor type A domain-containing protein; PFAM: Protein of unknown function DUF3520; Uncharacterised protein family YfbK-like; von Willebrand factor type A; SMART: von Willebrand factor type A YP_005687157.1 PFAM: Radical SAM domain protein; KEGG: dhd:Dhaf_1782 radical SAM domain protein YP_005687158.1 PFAM: cellulosome anchoring protein cohesin region; type 3a cellulose-binding domain protein; KEGG: cce:Ccel_0728 cellulosome anchoring protein cohesin region YP_005687159.1 PFAM: cellulosome anchoring protein cohesin region; S-layer domain-containing protein; KEGG: lel:LELG_02536 hypothetical protein YP_005687160.1 PFAM: cellulosome anchoring protein cohesin region; S-layer domain-containing protein; KEGG: lsp:Bsph_2088 cell surface glycoprotein 2 precursor (S-layer protein 2) YP_005687161.1 PFAM: cellulosome anchoring protein cohesin region; S-layer domain-containing protein; KEGG: gym:GYMC10_4794 legume lectin beta domain protein YP_005687162.1 KEGG: cno:NT01CX_1704 transglutaminase-like enzyme, putative cysteine protease; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein YP_005687163.1 KEGG: cbe:Cbei_2154 EmrB/QacA family drug resistance transporter YP_005687164.1 KEGG: sul:SYO3AOP1_1521 transglutaminase domain protein YP_005687165.1 KEGG: bbe:BBR47_55320 hypothetical protein; PFAM: RNA methylase; THUMP domain-containing protein YP_005687166.1 KEGG: clj:CLJU_c29210 putative transcriptional regulator; PFAM: response regulator receiver; SMART: response regulator receiver YP_005687167.1 KEGG: cce:Ccel_2428 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_005687168.1 TIGRFAM: sporulation transcription factor Spo0A; PFAM: Sporulation initiation factor Spo0A ; response regulator receiver; KEGG: ctc:CTC01569 stage 0 sporulation protein A; SMART: response regulator receiver YP_005687169.1 KEGG: cce:Ccel_2424 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_005687170.1 PFAM: UspA domain-containing protein; KEGG: cce:Ccel_2423 UspA domain protein YP_005687171.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; KEGG: cce:Ccel_2422 fumarate hydratase; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region YP_005687172.1 KEGG: cce:Ccel_2421 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region YP_005687173.1 PFAM: Domain of unknown function DUF1858; KEGG: cce:Ccel_2420 hypothetical protein YP_005687174.1 SMART: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; KEGG: cce:Ccel_2419 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase YP_005687175.1 PFAM: transposase IS200-family protein; KEGG: dhd:Dhaf_3832 transposase IS200-family protein YP_005687176.1 PFAM: glycosyl transferase family 2; KEGG: geo:Geob_0317 glycosyl transferase family 2 YP_005687177.1 PFAM: glycosyl transferase family 39; coagulation factor 5/8 type domain protein; KEGG: geo:Geob_0316 glycosyl transferase family 39 YP_005687178.1 KEGG: cce:Ccel_0881 carbohydrate-binding, CenC-like protein YP_005687179.1 PFAM: glycosyl transferase family 2; KEGG: dhd:Dhaf_2535 glycosyl transferase family 2 YP_005687180.1 KEGG: mta:Moth_2227 hypothetical protein YP_005687181.1 PFAM: glycosyl transferase family 2; KEGG: mta:Moth_2228 glycosyl transferase family protein YP_005687182.1 TIGRFAM: diaminopimelate epimerase; KEGG: mmq:MmarC5_0724 diaminopimelate epimerase; PFAM: diaminopimelate epimerase YP_005687183.1 KEGG: dae:Dtox_2324 L,L-diaminopimelate aminotransferase; TIGRFAM: LL-diaminopimelate aminotransferase; PFAM: aminotransferase class I and II YP_005687184.1 KEGG: cpr:CPR_2090 transcription regulator LytR-like protein; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator YP_005687185.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dae:Dtox_3625 2-hydroxyglutaryl-CoA dehydratase D-component YP_005687186.1 KEGG: cbi:CLJ_B1663 putative CoA-substrate-specific enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type YP_005687187.1 KEGG: dsy:DSY2055 hypothetical protein; TIGRFAM: exsB protein; PFAM: Queuosine synthesis-like YP_005687188.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: tte:TTE2368 6-pyruvoyl-tetrahydropterin synthase YP_005687189.1 PFAM: Radical SAM domain protein; KEGG: bts:Btus_0458 radical SAM domain protein YP_005687190.1 KEGG: cce:Ccel_2416 phage SPO1 DNA polymerase-related protein; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily YP_005687191.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: cce:Ccel_2415 uracil-DNA glycosylase superfamily YP_005687192.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: eel:EUBELI_00047 hypothetical protein YP_005687193.1 PFAM: transposase IS200-family protein; KEGG: dhd:Dhaf_3832 transposase IS200-family protein YP_005687194.1 KEGG: dae:Dtox_2165 hypothetical protein YP_005687196.1 PFAM: glycosidase related protein; KEGG: psl:Psta_1702 glycosidase PH1107-related protein YP_005687197.1 PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; KEGG: tte:TTE0065 nucleoside-diphosphate-sugar pyrophosphorylase YP_005687198.1 PFAM: glycosyl transferase group 1; KEGG: tex:Teth514_1786 glycosyl transferase, group 1 YP_005687199.1 manually curated; KEGG: tit:Thit_0057 hypothetical protein YP_005687200.1 TIGRFAM: mannose-6-phosphate isomerase, class I; KEGG: cce:Ccel_1179 mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I YP_005687201.1 PFAM: zinc/iron permease; KEGG: ctc:CTC01320 GufA protein YP_005687202.1 KEGG: cbe:Cbei_2338 hemerythrin-like metal-binding protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein YP_005687203.1 PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: brm:Bmur_1335 flavin reductase domain protein FMN-binding protein YP_005687204.1 KEGG: cbl:CLK_0631 pyruvate ferredoxin oxidoreductase; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein YP_005687205.1 manually curated; KEGG: cbi:CLJ_B1233 hypothetical protein YP_005687206.1 KEGG: ere:EUBREC_0268 carbohydrate-binding Module family 2 candidate secreted modular protein with two N-terminal CBM2 domains; manually curated; PFAM: S-layer domain-containing protein; von Willebrand factor type A YP_005687207.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: ere:EUBREC_0268 carbohydrate-binding Module family 2 candidate secreted modular protein with two N-terminal CBM2 domains YP_005687208.1 PFAM: AMP-dependent synthetase and ligase; KEGG: swo:Swol_1180 hypothetical protein YP_005687209.1 PFAM: heat shock protein Hsp20; KEGG: tjr:TherJR_0910 heat shock protein HSP20 YP_005687210.1 KEGG: clj:CLJU_c15020 putative NUDIX hydrolase; manually curated; PFAM: NUDIX hydrolase YP_005687211.1 PFAM: peptidase M56 BlaR1; KEGG: ckr:CKR_3089 hypothetical protein YP_005687212.1 KEGG: brm:Bmur_0669 hypothetical protein YP_005687213.1 PFAM: Citrate transporter; KEGG: eel:EUBELI_00346 hypothetical protein YP_005687214.1 KEGG: mac:MA2453 hypothetical protein YP_005687215.1 KEGG: gym:GYMC10_0353 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A YP_005687216.1 PFAM: Dockerin type 1; KEGG: gym:GYMC10_0203 S-layer domain protein YP_005687217.1 KEGG: cbf:CLI_0921 non-haem haloperoxidase family protein; manually curated; PFAM: alpha/beta hydrolase fold YP_005687218.1 KEGG: amt:Amet_2242 hypothetical protein YP_005687219.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Dockerin type 1; KEGG: ter:Tery_0117 peptidase S8/S53 subtilisin kexin sedolisin YP_005687221.1 KEGG: coc:Coch_0119 hypothetical protein YP_005687222.1 PFAM: regulatory protein TetR; KEGG: amt:Amet_4671 TetR family transcriptional regulator YP_005687223.1 PFAM: Carbohydrate binding family 6; Dockerin type 1; lipolytic protein G-D-S-L family; KEGG: bsu:BSU39120 putative esterase (lipoprotein) YP_005687224.1 manually curated; KEGG: aoe:Clos_0774 hypothetical protein YP_005687225.1 PFAM: Penicillinase repressor; KEGG: dsy:DSY1014 hypothetical protein YP_005687226.1 PFAM: peptidase M56 BlaR1; KEGG: dae:Dtox_2651 hypothetical protein YP_005687227.1 KEGG: cpy:Cphy_1237 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_005687228.1 KEGG: cpy:Cphy_1238 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_005687229.1 TIGRFAM: aminoacyl-histidine dipeptidase; KEGG: bpo:BP951000_1612 Xaa His dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_005687230.1 manually curated; TIGRFAM: cobalamin biosynthesis protein CobD; KEGG: tte:TTE0377 cobalamin biosynthesis protein CobD/CbiB; PFAM: cobalamin biosynthesis protein CbiB YP_005687231.1 manually curated; KEGG: cac:CA_C1383 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; PFAM: cobalbumin biosynthesis protein YP_005687232.1 manually curated; TIGRFAM: cobalamin 5'-phosphate synthase; KEGG: cac:CA_C1384 cobalamin synthase; PFAM: cobalamin-5-phosphate synthase CobS YP_005687233.1 KEGG: ckr:CKR_0654 hypothetical protein; TIGRFAM: alpha-ribazole phosphatase; PFAM: Phosphoglycerate mutase YP_005687234.1 KEGG: ate:Athe_1767 protein of unknown function DUF1393 YP_005687235.1 KEGG: tte:TTE0940 beta-lactamase superfamily hydrolase YP_005687236.1 KEGG: cce:Ccel_2179 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_005687237.1 PFAM: pyruvate carboxyltransferase; KEGG: cce:Ccel_2177 pyruvate carboxyltransferase YP_005687238.1 KEGG: cce:Ccel_2176 aconitate hydratase; TIGRFAM: aconitate hydratase; PFAM: aconitate hydratase domain-containing protein YP_005687239.1 manually curated; PFAM: GntR domain protein; regulatory protein GntR HTH; KEGG: cce:Ccel_2175 transcriptional regulator, GntR family; SMART: regulatory protein GntR HTH YP_005687240.1 KEGG: cce:Ccel_2172 RNA methylase, NOL1/NOP2/sun family; TIGRFAM: RNA methylase, NOL1/NOP2/sun family; PFAM: Fmu (Sun) domain protein YP_005687241.1 KEGG: bcy:Bcer98_3369 pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_005687242.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: cce:Ccel_2170 SAM dependent methyltransferase YP_005687243.1 PFAM: Carbohydrate binding family 25; KEGG: cce:Ccel_2169 carbohydrate-binding family 25 protein YP_005687244.1 KEGG: gym:GYMC10_3892 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_005687245.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gym:GYMC10_2893 PpiC-type peptidyl-prolyl cis-trans isomerase YP_005687246.1 KEGG: cce:Ccel_3401 glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase YP_005687247.1 KEGG: cce:Ccel_3400 glucose-1-phosphate adenylyltransferase, GlgD subunit; TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; PFAM: Nucleotidyl transferase YP_005687248.1 KEGG: cce:Ccel_3476 putative lipid kinase; PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region YP_005687249.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbe:BBR47_40230 enoyl-[acyl-carrier-protein] reductase [NADH] YP_005687250.1 manually curated; PFAM: ABC transporter related; KEGG: amt:Amet_0366 ABC transporter related; SMART: AAA ATPase YP_005687251.1 KEGG: amt:Amet_0367 S-layer-like domain-containing protein YP_005687252.1 PFAM: protein of unknown function DUF214; KEGG: swo:Swol_0943 ABC transporter component-like protein YP_005687253.1 PFAM: sodium/calcium exchanger membrane region; KEGG: cce:Ccel_2086 sodium/calcium exchanger membrane region YP_005687254.1 KEGG: cce:Ccel_2085 hypothetical protein YP_005687255.1 PFAM: protein of unknown function DUF421; KEGG: tjr:TherJR_0421 protein of unknown function DUF421 YP_005687256.1 PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cce:Ccel_0484 small acid-soluble spore protein alpha/beta type YP_005687257.1 KEGG: clj:CLJU_c15830 putative monogalactosyldiacylglycerol synthase; manually curated; PFAM: Monogalactosyldiacylglycerol synthase YP_005687258.1 PFAM: protein of unknown function DUF342; KEGG: cce:Ccel_0028 protein of unknown function DUF342 YP_005687259.1 KEGG: cce:Ccel_0487 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein YP_005687260.1 KEGG: rrs:RoseRS_1981 ribosomal RNA methyltransferase YP_005687261.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: cbi:CLJ_B1431 potassium transporter peripheral membrane component YP_005687262.1 PFAM: cation transporter; KEGG: cbf:CLI_1412 trk system potassium uptake protein TrkH YP_005687263.1 KEGG: mfe:Mefer_0980 7-cyano-7-deazaguanine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; PFAM: Queuine/other tRNA-ribosyltransferase YP_005687264.1 KEGG: cce:Ccel_0488 radical SAM domain protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB YP_005687265.1 PFAM: ATP-binding region ATPase domain protein; KEGG: cce:Ccel_2285 anti-sigma F factor YP_005687266.1 PFAM: copper amine oxidase-like domain-containing protein; peptidase domain protein; KEGG: cbo:CBO0379 cell surface protein YP_005687267.1 KEGG: edi:EDI_171550 valyl-tRNA synthetase YP_005687268.1 TIGRFAM: helicase, RecD/TraA family; KEGG: tjr:TherJR_0537 helicase, RecD/TraA family; SMART: AAA ATPase; Helix-hairpin-helix DNA-binding class 1 YP_005687269.1 KEGG: cac:CA_C0037 MinD family ATPase YP_005687270.1 KEGG: bce:BC4459 type I restriction-modification system methylation subunit YP_005687271.1 KEGG: amt:Amet_0549 phospholipase C zinc-binding protein; PFAM: phospholipase C zinc-binding protein; SMART: phospholipase C zinc-binding protein YP_005687272.1 PFAM: Sporulation lipoprotein YhcN/YlaJ-like; KEGG: aoe:Clos_1365 sporulation lipoprotein YhcN/YlaJ YP_005687273.1 KEGG: cce:Ccel_0693 hypothetical protein YP_005687274.1 PFAM: Uncharacterised conserved protein UCP033563; KEGG: cce:Ccel_1193 hypothetical protein YP_005687275.1 PFAM: PRC-barrel domain protein; KEGG: cce:Ccel_1194 PRC-barrel domain protein YP_005687276.1 KEGG: cce:Ccel_1195 hypothetical protein YP_005687277.1 PFAM: protein of unknown function UPF0118; KEGG: cce:Ccel_1196 protein of unknown function UPF0118 YP_005687278.1 TIGRFAM: alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD; KEGG: cce:Ccel_2096 alanyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase SAD YP_005687279.1 PFAM: CRISPR-associated protein TM1802; KEGG: mae:Maeo_1073 CRISPR-associated Csh1 family protein YP_005687280.1 KEGG: mif:Metin_1193 hypothetical protein YP_005687281.1 KEGG: chl:Chy400_2444 hypothetical protein YP_005687282.1 KEGG: chl:Chy400_2444 hypothetical protein YP_005687283.1 KEGG: pyo:PY01185 235 kDa rhoptry protein YP_005687284.1 KEGG: cbb:CLD_2403 hypothetical protein YP_005687285.1 PFAM: protein of unknown function DUF324; KEGG: chl:Chy400_2446 hypothetical protein YP_005687286.1 KEGG: cbb:CLD_2404 CRISPR-associated RAMP protein YP_005687287.1 PFAM: protein of unknown function DUF324; KEGG: cbb:CLD_2405 CRISPR-associated RAMP protein YP_005687288.1 KEGG: cbb:CLD_2406 hypothetical protein YP_005687289.1 PFAM: protein of unknown function DUF324; KEGG: cbb:CLD_2407 hypothetical protein YP_005687290.1 KEGG: tva:TVAG_167180 hypothetical protein YP_005687291.1 TIGRFAM: CRISPR-associated protein, TIGR02710 family; KEGG: tit:Thit_0694 CRISPR-associated protein, TIGR02710 family YP_005687292.1 KEGG: mmq:MmarC5_0773 CRISPR-associated Cas2 family protein; TIGRFAM: CRISPR-associated protein Cas2; PFAM: Virulence-associated protein D / CRISPR associated protein Cas2 YP_005687293.1 TIGRFAM: CRISPR-associated protein Cas4; KEGG: mmq:MmarC5_0774 CRISPR-associated exonuclease Cas4 family protein YP_005687294.1 PFAM: transposase mutator type; KEGG: tpd:Teth39_2032 transposase, mutator type YP_005687295.1 KEGG: bth:BT_3319 signal peptidase I YP_005687296.1 KEGG: cac:CA_C3039 hypothetical protein YP_005687297.1 manually curated; KEGG: cce:Ccel_2196 hypothetical protein YP_005687298.1 manually curated; KEGG: pbe:PB000356.00.0 hypothetical protein YP_005687299.1 KEGG: ava:Ava_1556 ribosome assembly protein 4 (RSA4) YP_005687300.1 PFAM: Integrase catalytic region; transposase IS3/IS911 family protein; KEGG: cce:Ccel_2178 transposase IS3/IS911 family protein YP_005687301.1 KEGG: bcx:BCA_2215 nitrate reductase molybdenum cofactor assembly chaperone YP_005687302.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: tjr:TherJR_0863 copper amine oxidase domain protein YP_005687303.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: tjr:TherJR_0863 copper amine oxidase domain protein YP_005687304.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: tjr:TherJR_0863 copper amine oxidase domain protein YP_005687305.1 KEGG: cqu:CpipJ_CPIJ011711 hypothetical protein YP_005687306.1 KEGG: srt:Srot_0731 hypothetical protein YP_005687307.1 manually curated; TIGRFAM: YD repeat protein; KEGG: cbe:Cbei_4376 YD repeat-containing protein; PFAM: YD repeat-containing protein YP_005687308.1 PFAM: Ankyrin; KEGG: tde:TDE2014 ankyrin repeateat-containing protein YP_005687309.1 PFAM: transposase mutator type; KEGG: bts:Btus_2829 transposase mutator type YP_005687310.1 KEGG: cbe:Cbei_4376 YD repeat-containing protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein YP_005687311.1 KEGG: bcb:BCB4264_A0981 hypothetical protein YP_005687312.1 KEGG: zro:ZYRO0G15246g hypothetical protein YP_005687313.1 KEGG: mmu:12262 complement component 1, q subcomponent, C chain YP_005687314.1 PFAM: transposase mutator type; KEGG: tpd:Teth39_2032 transposase, mutator type YP_005687315.1 PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; KEGG: amt:Amet_4663 FAD dependent oxidoreductase YP_005687316.1 KEGG: cpi:Cpin_2966 hypothetical protein YP_005687317.1 KEGG: acl:ACL_1323 ABC-type transport system, substrate-binding component; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_005687318.1 KEGG: ere:EUBREC_2004 putative ABC-type polar amino acid transport system, permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_005687319.1 KEGG: ere:EUBREC_2003 putative amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_005687320.1 KEGG: apv:Apar_0764 hypothetical protein YP_005687321.1 manually curated; KEGG: ctc:CTC02440 hypothetical protein YP_005687322.1 KEGG: ate:Athe_0718 KWG repeat protein YP_005687323.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ate:Athe_0840 GCN5-related N-acetyltransferase YP_005687324.1 KEGG: cbh:CLC_0731 hypothetical protein YP_005687325.1 KEGG: spb:M28_Spy1085 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_005687326.1 KEGG: eel:EUBELI_20606 multidrug resistance protein, MATE family; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_005687327.1 KEGG: cbi:CLJ_B2329 transcriptional regulator, MerR family YP_005687328.1 KEGG: pjd:Pjdr2_1276 copper amine oxidase domain protein; manually curated; PFAM: TIR protein; peptidase S1 and S6 chymotrypsin/Hap YP_005687329.1 KEGG: cac:CA_C2470 hypothetical protein YP_005687330.1 KEGG: cbo:CBO0408 hypothetical protein YP_005687331.1 KEGG: pjd:Pjdr2_2791 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein YP_005687332.1 KEGG: dsy:DSY4230 hypothetical protein; manually curated; PFAM: Domain of unknown function DUF3298 YP_005687333.1 KEGG: seu:SEQ_2102 phosphoglycerate mutase family protein; manually curated; PFAM: Phosphoglycerate mutase YP_005687334.1 KEGG: aoe:Clos_0175 hypothetical protein YP_005687335.1 KEGG: dhd:Dhaf_2101 short-chain dehydrogenase/reductase SDR; manually curated; PFAM: short-chain dehydrogenase/reductase SDR YP_005687336.1 KEGG: dhd:Dhaf_3832 transposase IS200-family protein; manually curated; PFAM: transposase IS200-family protein YP_005687337.1 manually curated; KEGG: cpy:Cphy_2889 hypothetical protein YP_005687338.1 KEGG: cbe:Cbei_5052 hypothetical protein YP_005687339.1 KEGG: ctc:CTC01798 hypothetical protein YP_005687340.1 KEGG: hor:Hore_04820 beta-glucosidase; PFAM: glycoside hydrolase family 1 YP_005687341.1 PFAM: branched-chain amino acid transport; KEGG: cbt:CLH_2217 branched-chain amino acid transport YP_005687342.1 PFAM: AzlC family protein; KEGG: cbt:CLH_2216 AzlC family protein YP_005687343.1 KEGG: tle:Tlet_2017 membrane-bound proton-translocating pyrophosphatase; PFAM: Inorganic H pyrophosphatase YP_005687344.1 KEGG: mmh:Mmah_0121 hypothetical protein YP_005687345.1 PFAM: protein of unknown function UPF0118; KEGG: cpf:CPF_0522 hypothetical protein YP_005687347.1 PFAM: transposase IS200-family protein; KEGG: dhd:Dhaf_3832 transposase IS200-family protein YP_005687348.1 KEGG: bha:BH0806 hypothetical protein; manually curated; PFAM: RDD domain containing protein; protein of unknown function DUF718 YP_005687349.1 KEGG: bsu:BSU29530 signal peptide peptidase; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49 YP_005687350.1 PFAM: protein of unknown function DUF204; KEGG: dhd:Dhaf_2300 protein of unknown function DUF204 YP_005687351.1 KEGG: dsi:Dsim_GD25232 GD25232 gene product from transcript GD25232-RA YP_005687352.1 KEGG: zpr:ZPR_4614 prolyl endopeptidase YP_005687353.1 KEGG: cbi:CLJ_B3630 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_005687354.1 KEGG: cbi:CLJ_B3629 putative lipoprotein YP_005687355.1 manually curated; KEGG: cbi:CLJ_B3629 putative lipoprotein YP_005687356.1 KEGG: cce:Ccel_3218 tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_005687357.1 TIGRFAM: tryptophan synthase, alpha subunit; KEGG: cpy:Cphy_3842 tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain YP_005687358.1 KEGG: aoe:Clos_0643 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_005687359.1 KEGG: cdl:CDR20291_0870 two-component system sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_005687360.1 KEGG: gga:428690 G protein-coupled receptor 119 YP_005687361.1 KEGG: cdl:CDR20291_0869 two-component system response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_005687362.1 PFAM: VTC domain; KEGG: cpf:CPF_1141 hypothetical protein YP_005687363.1 KEGG: swo:Swol_2179 hypothetical protein YP_005687364.1 PFAM: Spore coat protein CotH; KEGG: cpf:CPF_1143 hypothetical protein YP_005687365.1 PFAM: Ferrous iron transport protein B domain-containing protein; Ferrous iron transport B domain-containing protein; nucleoside recognition domain protein; KEGG: cbt:CLH_1794 ferrous iron transport protein B YP_005687366.1 PFAM: FeoA family protein; KEGG: cbt:CLH_1793 hypothetical protein YP_005687367.1 KEGG: cce:Ccel_0797 iron dependent repressor; PFAM: iron dependent repressor; SMART: iron dependent repressor; regulatory protein MarR YP_005687368.1 manually curated; KEGG: aoe:Clos_2092 hypothetical protein YP_005687369.1 PFAM: glycosyl hydrolase 53 domain protein; Dockerin type 1; KEGG: cce:Ccel_2123 glycosyl hydrolase 53 domain protein YP_005687370.1 KEGG: cce:Ccel_0233 C_GCAxxG_C_C family protein; TIGRFAM: C_GCAxxG_C_C family protein; PFAM: C_GCAxxG_C_C family protein YP_005687371.1 PFAM: Dockerin type 1; Kelch repeat type 1-containing protein; KEGG: cac:CA_C0919 sialidase YP_005687372.1 PFAM: glycosyl transferase family 8; KEGG: ckr:CKR_0909 hypothetical protein YP_005687373.1 KEGG: cac:CA_C3316 cardiolipin synthase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase YP_005687374.1 manually curated; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: cce:Ccel_2106 two component transcriptional regulator, winged helix family; SMART: response regulator receiver YP_005687375.1 KEGG: cce:Ccel_2107 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein YP_005687376.1 KEGG: deg:DehalGT_0710 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein YP_005687377.1 PFAM: alpha/beta hydrolase fold; KEGG: chy:CHY_0890 alpha/beta fold family hydrolase YP_005687378.1 KEGG: cce:Ccel_2295 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain YP_005687379.1 KEGG: tpd:Teth39_1696 TrpR like protein, YerC/YecD; TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor YP_005687380.1 manually curated; KEGG: ftn:FTN_0537 proton-dependent oligopeptide transporter (POT) family protein, di-or tripeptide:H+ symporter YP_005687381.1 KEGG: tte:TTE0519 hypothetical protein YP_005687382.1 KEGG: cce:Ccel_1457 preprotein translocase subunit SecA; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; SecA Wing and Scaffold; SEC-C motif domain protein YP_005687383.1 TIGRFAM: FolC bifunctional protein; KEGG: cce:Ccel_1447 FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein YP_005687384.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: cce:Ccel_1448 tetratricopeptide TPR_2 YP_005687385.1 PFAM: Patatin; KEGG: cce:Ccel_1449 patatin YP_005687386.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; manually curated; KEGG: cce:Ccel_1450 threonine synthase; TIGRFAM: threonine synthase YP_005687387.1 KEGG: csc:Csac_1059 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_005687388.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: hor:Hore_11260 oxidoreductase domain protein YP_005687389.1 KEGG: drt:Dret_0887 response regulator receiver modulated metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: metal-dependent phosphohydrolase HD region; response regulator receiver YP_005687390.1 PFAM: amino acid-binding ACT domain protein; KEGG: cce:Ccel_1451 hypothetical protein YP_005687391.1 PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: cce:Ccel_1452 homoserine dehydrogenase YP_005687392.1 KEGG: bha:BH1500 aspartate kinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein YP_005687393.1 KEGG: tjr:TherJR_0863 copper amine oxidase domain protein; manually curated; PFAM: copper amine oxidase-like domain-containing protein YP_005687394.1 KEGG: cbe:Cbei_4376 YD repeat-containing protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein YP_005687395.1 KEGG: sea:SeAg_B3342 hypothetical protein YP_005687396.1 KEGG: tad:TRIADDRAFT_57864 hypothetical protein YP_005687398.1 KEGG: clj:CLJU_c34640 putative deacetylase YP_005687399.1 KEGG: cbe:Cbei_4376 YD repeat-containing protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein YP_005687400.1 KEGG: bcg:BCG9842_B0158 hypothetical protein YP_005687402.1 PFAM: histidine triad (HIT) protein; KEGG: tjr:TherJR_2445 histidine triad (HIT) protein YP_005687403.1 PFAM: S-layer domain-containing protein; KEGG: adg:Adeg_0120 S-layer domain protein YP_005687404.1 PFAM: transposase IS200-family protein; KEGG: dhd:Dhaf_3832 transposase IS200-family protein YP_005687405.1 KEGG: tpd:Teth39_1553 protein-tyrosine-phosphatase; PFAM: PHP domain protein YP_005687406.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: dth:DICTH_0149 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_005687407.1 KEGG: bhy:BHWA1_01395 hypothetical protein YP_005687408.1 KEGG: cpr:CPR_0488 hypothetical protein YP_005687409.1 TIGRFAM: capsular exopolysaccharide family; KEGG: rxy:Rxyl_0560 protein-tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein YP_005687410.1 KEGG: cce:Ccel_0204 NusG antitermination factor; PFAM: NGN domain-containing protein; SMART: NGN domain-containing protein YP_005687411.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: bth:BT_0380 nucleotide sugar epimerase YP_005687412.1 PFAM: Oligosaccharide biosynthesis protein Alg14 like; KEGG: cpy:Cphy_1202 oligosaccharide biosynthesis protein Alg14-like protein YP_005687413.1 PFAM: Glycosyltransferase 28 domain; KEGG: blt:Balat_1401 glycosyltransferase 28-like protein YP_005687414.1 KEGG: cpy:Cphy_1205 glycosyltransferase YP_005687415.1 PFAM: glycosyl transferase group 1; KEGG: cpy:Cphy_1204 glycosyl transferase group 1 YP_005687416.1 manually curated; KEGG: cpy:Cphy_1205 glycosyltransferase YP_005687417.1 PFAM: glycosyl transferase family 2; KEGG: oih:OB2889 glycosyltransferase YP_005687418.1 PFAM: O-antigen polymerase; KEGG: bca:BCE_5389 O-antigen polymerase (wzy) YP_005687419.1 PFAM: polysaccharide biosynthesis protein; KEGG: pdi:BDI_0440 CPS repeat-containing transporter YP_005687420.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: hor:Hore_22770 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase ; UDP-glucose/GDP-mannose dehydrogenase dimerisation YP_005687421.1 PFAM: VanZ family protein; KEGG: bha:BH3707 acetobutylicum phosphotransbutyrylase YP_005687422.1 manually curated; TIGRFAM: single-strand binding protein; KEGG: cce:Ccel_0056 single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n YP_005687423.1 PFAM: sugar transferase; manually curated; KEGG: gur:Gura_3177 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_005687424.1 KEGG: cce:Ccel_2094 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21 YP_005687425.1 KEGG: cce:Ccel_2093 GatB/YqeY domain protein YP_005687426.1 KEGG: amt:Amet_2351 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1 YP_005687427.1 KEGG: cce:Ccel_1952 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_005687428.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: RelA/SpoT family protein; KEGG: cce:Ccel_1951 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; TGS domain-containing protein; metal-dependent phosphohydrolase HD sub domain YP_005687429.1 KEGG: cce:Ccel_1950 D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_005687430.1 KEGG: slp:Slip_0770 beta-lactamase-like protein YP_005687431.1 PFAM: Radical SAM domain protein; KEGG: cce:Ccel_1948 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_005687432.1 KEGG: tjr:TherJR_2441 hypothetical protein YP_005687433.1 PFAM: type II secretion system protein E; KEGG: tjr:TherJR_2440 type II secretion system protein E YP_005687434.1 PFAM: Type II secretion system F domain; KEGG: cce:Ccel_0504 Flp pilus assembly protein TadB-like protein YP_005687435.1 PFAM: Type II secretion system F domain; KEGG: tjr:TherJR_2438 type II secretion system F domain protein YP_005687436.1 KEGG: ere:EUBREC_0045 hypothetical protein YP_005687437.1 KEGG: cce:Ccel_0507 hypothetical protein YP_005687438.1 PFAM: peptidase A24A prepilin type IV; KEGG: hor:Hore_06010 prepilin peptidase YP_005687439.1 KEGG: tjr:TherJR_2432 FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein YP_005687440.1 KEGG: cno:NT01CX_1677 DNA polymerase I YP_005687441.1 TIGRFAM: histidyl-tRNA synthetase; KEGG: tmt:Tmath_1086 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein YP_005687442.1 KEGG: cce:Ccel_1946 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein YP_005687443.1 manually curated; TIGRFAM: signal peptidase I; KEGG: apr:Apre_1183 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region YP_005687444.1 KEGG: clj:CLJU_c35330 putative activator of (R)-2-hydroxyglutaryl-coA dehydratase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: Protein of unknown function DUF2229, CoA enzyme activase; 2-hydroxyglutaryl-CoA dehydratase D-component; ATPase BadF/BadG/BcrA/BcrD type YP_005687445.1 KEGG: cin:100180475 similar to LOC414497 protein YP_005687446.1 KEGG: cce:Ccel_1944 stage II sporulation protein P; TIGRFAM: stage II sporulation protein P; PFAM: Stage II sporulation P family protein YP_005687447.1 KEGG: pfh:PFHG_04547 conserved hypothetical protein YP_005687448.1 KEGG: cce:Ccel_1941 GTP-binding protein LepA; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein YP_005687449.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; KEGG: cce:Ccel_1980 oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein YP_005687450.1 manually curated; TIGRFAM: heat-inducible transcription repressor HrcA; KEGG: cce:Ccel_1800 heat-inducible transcription repressor HrcA; PFAM: Winged helix-turn-helix transcription repressor, HrcA-like YP_005687451.1 PFAM: GrpE protein; KEGG: cce:Ccel_1799 GrpE protein YP_005687452.1 TIGRFAM: chaperone protein DnaK; KEGG: cce:Ccel_1798 molecular chaperone DnaK; PFAM: Heat shock protein 70 YP_005687453.1 TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; KEGG: cce:Ccel_1797 chaperone protein DnaJ; SMART: heat shock protein DnaJ domain protein YP_005687454.1 KEGG: cce:Ccel_1796 ribosomal protein L11 methyltransferase; TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase YP_005687455.1 KEGG: cce:Ccel_1795 protein of unknown function DUF558; manually curated; PFAM: protein of unknown function DUF558 YP_005687456.1 KEGG: cce:Ccel_1794 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_005687458.1 PFAM: YicC-like domain-containing protein; domain of unknown function DUF1732; KEGG: cce:Ccel_1793 hypothetical protein YP_005687459.1 PFAM: protein of unknown function DUF370; KEGG: cce:Ccel_1792 hypothetical protein YP_005687460.1 SMART: guanylate kinase/L-type calcium channel region; TIGRFAM: guanylate kinase; KEGG: cce:Ccel_1791 guanylate kinase; PFAM: guanylate kinase YP_005687461.1 KEGG: cce:Ccel_1790 DNA-directed RNA polymerase, omega subunit; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6 YP_005687462.1 PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; manually curated; KEGG: aoe:Clos_1425 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase YP_005687463.1 KEGG: cce:Ccel_1789 glycyl-tRNA synthetase; TIGRFAM: glycyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein YP_005687464.1 PFAM: ATP-binding region ATPase domain protein; KEGG: cce:Ccel_2125 signal transduction histidine kinase regulating citrate/malate metabolism YP_005687465.1 KEGG: cce:Ccel_2126 hypothetical protein YP_005687466.1 KEGG: cce:Ccel_2127 accessory gene regulator B; PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B YP_005687467.1 KEGG: shi:Shel_18370 predicted Fe-S oxidoreductase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_005687468.1 TIGRFAM: pyruvate, phosphate dikinase; KEGG: csc:Csac_1955 pyruvate phosphate dikinase; PFAM: PEP-utilizing protein; pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region YP_005687469.1 PFAM: cellulosome anchoring protein cohesin region; S-layer domain-containing protein; KEGG: hmo:HM1_0137 multidomain protein with S-layer homology region, glug motif, ig motif, I-set domain, pkd domain YP_005687470.1 KEGG: bfu:BC1G_12391 hypothetical protein YP_005687471.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: tle:Tlet_1738 cupin 2 domain-containing protein YP_005687472.1 KEGG: cbl:CLK_3694 PhoH family protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc YP_005687473.1 PFAM: glycosyl transferase group 1; Starch synthase catalytic domain-containing protein; KEGG: cce:Ccel_1773 glycosyl transferase group 1 YP_005687474.1 PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: cce:Ccel_1772 beta-lactamase domain protein YP_005687475.1 PFAM: protein of unknown function DUF795; KEGG: cce:Ccel_1771 protein of unknown function DUF795 YP_005687476.1 KEGG: tex:Teth514_2182 hypothetical protein YP_005687477.1 KEGG: cce:Ccel_2166 hypothetical protein YP_005687478.1 PFAM: Ribosomal protein L25-like; KEGG: aoe:Clos_0044 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_005687479.1 TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; KEGG: cce:Ccel_0646 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_005687480.1 KEGG: cce:Ccel_2165 hypothetical protein YP_005687481.1 KEGG: cdl:CDR20291_3292 putative 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_005687483.1 KEGG: dae:Dtox_0190 resolvase domain protein; manually curated; PFAM: Recombinase; Resolvase domain YP_005687484.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dhd:Dhaf_3058 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region YP_005687485.1 TIGRFAM: proposed homoserine kinase; phosphonopyruvate decarboxylase-related protein; KEGG: cce:Ccel_2140 proposed homoserine kinase; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; metalloenzyme domain protein YP_005687486.1 PFAM: amidohydrolase 2; KEGG: cce:Ccel_0547 amidohydrolase 2 YP_005687487.1 KEGG: aoe:Clos_0441 sodium pump decarboxylase, gamma subunit YP_005687488.1 KEGG: tet:TTHERM_01043120 hypothetical protein YP_005687489.1 KEGG: cce:Ccel_1892 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing protein YP_005687490.1 manually curated; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cce:Ccel_1891 histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_005687491.1 KEGG: cce:Ccel_1890 peptidase S1 and S6 chymotrypsin/Hap; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_005687492.1 KEGG: cce:Ccel_1889 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_005687493.1 KEGG: tjr:TherJR_2362 glycogen/starch synthase, ADP-glucose type; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain-containing protein; glycosyl transferase group 1 YP_005687494.1 SMART: HhH-GPD family protein; iron-sulfur cluster loop; TIGRFAM: endonuclease III; KEGG: cce:Ccel_1887 endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop YP_005687495.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: cce:Ccel_1885 diguanylate cyclase with GAF sensor; SMART: GGDEF domain containing protein; GAF domain protein YP_005687496.1 KEGG: cce:Ccel_1884 hypothetical protein YP_005687497.1 KEGG: csc:Csac_2347 transglycosylase-associated protein YP_005687498.1 KEGG: cce:Ccel_1883 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28 YP_005687499.1 TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; KEGG: cce:Ccel_1882 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase ; helicase domain protein YP_005687500.1 KEGG: cce:Ccel_1881 methyltransferase; TIGRFAM: methyltransferase; PFAM: Conserved hypothetical protein CHP00095 YP_005687501.1 TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; KEGG: cce:Ccel_1880 phosphopantetheine adenylyltransferase; PFAM: cytidylyltransferase YP_005687502.1 KEGG: cce:Ccel_1879 H+-ATPase subunit H YP_005687503.1 KEGG: cce:Ccel_1878 sporulation integral membrane protein YlbJ; TIGRFAM: sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein YP_005687504.1 PFAM: alpha-L-arabinofuranosidase B; KEGG: syn:slr0518 arabinofuranosidase YP_005687505.1 PFAM: sigma-70 region 2 domain protein; KEGG: cbe:Cbei_2829 putative RNA polymerase sigma factor SigI YP_005687506.1 KEGG: cce:Ccel_1229 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; glycoside hydrolase family 43; Dockerin type 1; SMART: cellulose binding type IV YP_005687507.1 KEGG: amt:Amet_2165 proteinase inhibitor I4, serpin; PFAM: proteinase inhibitor I4 serpin; SMART: proteinase inhibitor I4 serpin YP_005687508.1 KEGG: scl:sce5027 iron-sulfur cluster-binding protein YP_005687509.1 KEGG: cce:Ccel_1864 sensor DegS domain protein; PFAM: Sensor DegS domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_005687510.1 KEGG: cce:Ccel_1863 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_005687511.1 KEGG: cce:Ccel_3226 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_005687512.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: cce:Ccel_1417 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_005687513.1 SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: cce:Ccel_1459 DNA polymerase III DnaE; PFAM: DNA polymerase III alpha subunit; nucleic acid binding OB-fold tRNA/helicase-type; PHP domain protein YP_005687514.1 PFAM: tryptophan RNA-binding attenuator protein; KEGG: dae:Dtox_0810 transcription attenuation protein MtrB YP_005687515.1 KEGG: cce:Ccel_1461 hypothetical protein YP_005687516.1 KEGG: ate:Athe_1265 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase YP_005687517.1 PFAM: thioesterase superfamily protein; KEGG: cce:Ccel_1462 thioesterase superfamily protein YP_005687518.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cce:Ccel_1463 CDP-alcohol phosphatidyltransferase YP_005687519.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: dae:Dtox_4298 copper amine oxidase domain protein YP_005687520.1 KEGG: csc:Csac_1076 glycoside hydrolase family protein; PFAM: Carbohydrate-binding CenC domain protein; type 3a cellulose-binding domain protein; SMART: von Willebrand factor type A YP_005687521.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: ttr:Tter_0181 glycoside hydrolase family 3 domain protein YP_005687522.1 KEGG: pcb:PC000923.01.0 hypothetical protein YP_005687523.1 KEGG: bbe:BBR47_45940 hypothetical protein YP_005687524.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; KEGG: msi:Msm_0823 phosphoenolpyruvate synthase/pyruvate phosphate dikinase, PpsA YP_005687525.1 PFAM: Auxin Efflux Carrier; KEGG: cce:Ccel_2186 auxin efflux carrier YP_005687526.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: cce:Ccel_0209 xanthine/uracil/vitamin C permease YP_005687527.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: cce:Ccel_2185 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_005687528.1 KEGG: cce:Ccel_2184 amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase YP_005687529.1 TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: cce:Ccel_2183 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_005687530.1 KEGG: cce:Ccel_2182 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein YP_005687531.1 SMART: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; KEGG: cce:Ccel_2181 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein YP_005687532.1 TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: cce:Ccel_2180 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain YP_005687533.1 PFAM: glycosyl transferase family 2; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: cby:CLM_3067 glycosyl transferase, family 2 YP_005687534.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mac:MA3114 acetyltransferase (GNAT) family protein YP_005687535.1 TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; KEGG: cce:Ccel_1363 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_005687536.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: csc:Csac_1816 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region YP_005687537.1 KEGG: cce:Ccel_1365 hypothetical protein YP_005687538.1 KEGG: cce:Ccel_1366 iojap-like protein; TIGRFAM: iojap-like protein; PFAM: Iojap-related protein YP_005687539.1 KEGG: csc:Csac_1819 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase YP_005687540.1 KEGG: cbe:Cbei_1606 fibronectin, type III domain-containing protein; PFAM: PKD domain containing protein; Fibronectin type III domain protein; Cna B domain protein; Hyalin; S-layer domain-containing protein; SMART: PKD domain containing protein; Fibronectin type III domain protein YP_005687541.1 KEGG: tme:Tmel_0749 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_005687542.1 KEGG: taf:THA_1814 integral membrane protein MviN YP_005687543.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cce:Ccel_1369 AMP-dependent synthetase and ligase YP_005687544.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: cce:Ccel_1370 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 YP_005687545.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: Soluble ligand binding domain; helix-hairpin-helix motif; KEGG: cce:Ccel_1371 competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding class 1 YP_005687546.1 PFAM: Lipoprotein LpqB, GerMN domain; KEGG: adg:Adeg_1491 lipoprotein LpqB, GerMN domain protein YP_005687548.1 KEGG: cce:Ccel_1372 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; TGS domain-containing protein; Anticodon-binding domain protein YP_005687549.1 TIGRFAM: thymidylate synthase; KEGG: dae:Dtox_0188 thymidylate synthase; PFAM: thymidylate synthase YP_005687550.1 PFAM: dihydrofolate reductase region; KEGG: cdl:CDR20291_0044 dihydrofolate reductase region YP_005687551.1 KEGG: cce:Ccel_1311 translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; PFAM: Translation initiation factor 3-like YP_005687552.1 KEGG: clo:HMPREF0868_1314 ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35 YP_005687553.1 KEGG: cce:Ccel_1313 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20 YP_005687554.1 KEGG: cce:Ccel_1437 RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding YP_005687555.1 PFAM: glycosyltransferase 36; glycosyltransferase 36 associated; carbohydrate binding; KEGG: amt:Amet_3537 glycosyltransferase 36 YP_005687556.1 KEGG: cce:Ccel_1801 hypothetical protein YP_005687557.1 KEGG: cdf:CD2126 hypothetical protein YP_005687558.1 TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; KEGG: sfu:Sfum_0044 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase YP_005687559.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: clj:CLJU_c24730 ATP-dependent Clp protease ATP-binding subunit ClpA; SMART: AAA ATPase YP_005687560.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: sat:SYN_02377 ATP-dependent Clp protease adaptor protein YP_005687561.1 PFAM: protein of unknown function DUF81; KEGG: cce:Ccel_2540 permease YP_005687562.1 PFAM: protein of unknown function DUF81; KEGG: cce:Ccel_2539 hypothetical protein YP_005687563.1 KEGG: pfa:PF08_0028 hypothetical protein YP_005687564.1 KEGG: pcb:PC000070.05.0 hypothetical protein YP_005687565.1 KEGG: cce:Ccel_2450 tryptophan synthase subunit beta; TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_005687566.1 KEGG: cce:Ccel_1375 hypothetical protein YP_005687567.1 KEGG: rty:RT0097 hypothetical protein YP_005687568.1 PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_3988 GCN5-related N-acetyltransferase YP_005687569.1 KEGG: dhd:Dhaf_0601 hypothetical protein YP_005687570.1 KEGG: msi:Msm_1288 hypothetical protein YP_005687571.1 KEGG: cce:Ccel_0489 putative serine protein kinase, PrkA; PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein YP_005687572.1 KEGG: cce:Ccel_0490 hypothetical protein; TIGRFAM: sporulation protein YhbH; PFAM: protein of unknown function DUF444 YP_005687573.1 PFAM: SpoVR family protein; KEGG: cce:Ccel_0491 SpoVR family protein YP_005687574.1 PFAM: major facilitator superfamily MFS_1; KEGG: tte:TTE2499 major facilitator superfamily permease YP_005687575.1 KEGG: eat:EAT1b_0450 purine nucleoside phosphorylase I, inosine and guanosine-specific; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family; PFAM: purine or other phosphorylase family 1 YP_005687576.1 TIGRFAM: adenosylhomocysteinase; KEGG: cce:Ccel_2168 adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding; S-adenosyl-L-homocysteine hydrolase YP_005687577.1 PFAM: amidohydrolase; KEGG: cce:Ccel_2167 amidohydrolase YP_005687578.1 KEGG: smm:Smp_135900 DNA double-strand break repair rad50 ATPase YP_005687579.1 SMART: Hedgehog/intein hint domain protein; KEGG: bcg:BCG9842_B2210 putative cytoplasmic protein YP_005687580.1 PFAM: Domain of unknown function DUF1910; Domain of unknown function DUF1911; KEGG: bcg:BCG9842_B2211 hypothetical protein YP_005687581.1 KEGG: tpd:Teth39_2032 transposase, mutator type; manually curated; PFAM: transposase mutator type YP_005687582.1 manually curated; KEGG: cce:Ccel_0039 S-layer domain protein YP_005687583.1 manually curated; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; KEGG: amt:Amet_2940 HAD family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase YP_005687584.1 manually curated; KEGG: ctc:CTC00441 hypothetical protein YP_005687585.1 manually curated; PFAM: ABC transporter related; KEGG: pjd:Pjdr2_2762 ABC transporter related; SMART: AAA ATPase YP_005687586.1 KEGG: pjd:Pjdr2_2761 protein of unknown function DUF990; manually curated; PFAM: protein of unknown function DUF990 YP_005687587.1 PFAM: protein of unknown function DUF990; KEGG: pjd:Pjdr2_2760 protein of unknown function DUF990 YP_005687588.1 KEGG: bfa:Bfae_06580 esterase/lipase YP_005687589.1 KEGG: bfa:Bfae_06590 hypothetical protein YP_005687590.1 KEGG: bfa:Bfae_06600 hypothetical protein YP_005687591.1 PFAM: ATPase associated with various cellular activities AAA_3; KEGG: cce:Ccel_1709 ATPase associated with various cellular activities AAA_3 YP_005687592.1 PFAM: protein of unknown function DUF58; KEGG: cce:Ccel_1710 protein of unknown function DUF58 YP_005687593.1 KEGG: cce:Ccel_1711 transglutaminase domain protein; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein YP_005687594.1 KEGG: cac:CA_C1357 hypothetical protein YP_005687595.1 KEGG: hmo:HM1_1019 small, acid-soluble spore protein h 1; TIGRFAM: small acid-soluble spore protein, H-type; PFAM: small acid-soluble spore H family protein YP_005687596.1 PFAM: isochorismatase hydrolase; KEGG: cpy:Cphy_1765 isochorismatase hydrolase YP_005687597.1 TIGRFAM: nicotinate phosphoribosyltransferase; KEGG: cbk:CLL_A2878 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like YP_005687598.1 PFAM: CheC domain protein; KEGG: amt:Amet_0247 CheC domain-containing protein YP_005687599.1 PFAM: protein of unknown function DUF155; KEGG: gur:Gura_1501 hypothetical protein YP_005687600.1 PFAM: protein of unknown function DUF155; KEGG: pjd:Pjdr2_0569 protein of unknown function DUF155 YP_005687601.1 PFAM: type IV pilus assembly PilZ; KEGG: cce:Ccel_2317 type IV pilus assembly PilZ YP_005687602.1 KEGG: bpo:BP951000_0774 iron-sulfur cluster-binding protein YP_005687603.1 KEGG: osa:4342478 hypothetical protein YP_005687604.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: cce:Ccel_0520 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 YP_005687605.1 TIGRFAM: dihydrodipicolinate reductase; KEGG: cce:Ccel_0519 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase YP_005687606.1 KEGG: bts:Btus_1014 beta-lactamase class A-like protein YP_005687608.1 PFAM: AMMECR1 domain protein; Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: tpd:Teth39_0581 hypothetical protein YP_005687609.1 PFAM: Radical SAM domain protein; KEGG: csc:Csac_1182 radical SAM domain-containing protein YP_005687610.1 PFAM: protein of unknown function DUF147; KEGG: cce:Ccel_1201 protein of unknown function DUF147 YP_005687611.1 PFAM: YbbR family protein; KEGG: cce:Ccel_1202 YbbR family protein YP_005687612.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cce:Ccel_1203 FAD dependent oxidoreductase YP_005687613.1 KEGG: cce:Ccel_1204 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase YP_005687614.1 KEGG: cce:Ccel_1205 glucosamine--fructose-6-phosphate aminotransferase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II YP_005687615.1 KEGG: amt:Amet_1827 regulatory protein, ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_005687616.1 KEGG: amt:Amet_0984 arsenical-resistance protein; TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter YP_005687617.1 KEGG: amt:Amet_0983 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_005687618.1 PFAM: permease; KEGG: ckr:CKR_1589 hypothetical protein YP_005687619.1 KEGG: cce:Ccel_1666 transposase IS3/IS911 family protein; manually curated; PFAM: transposase IS3/IS911 family protein YP_005687620.1 manually curated; KEGG: mga:MGA_0950 hypothetical protein YP_005687621.1 KEGG: tte:TTE1262 pili biogenesis protein PilB-like ATPase; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase YP_005687622.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: tte:TTE1263 pili biogenesis protein PilT-like ATPase; SMART: AAA ATPase YP_005687623.1 PFAM: Type II secretion system F domain; KEGG: tpd:Teth39_1069 type II secretion system protein YP_005687624.1 KEGG: drm:Dred_1042 hypothetical protein YP_005687625.1 manually curated; KEGG: hor:Hore_06040 prepilin-type N-terminal cleavage/methylation domain protein YP_005687626.1 KEGG: tte:TTE1273 hypothetical protein; manually curated; PFAM: Fimbrial assembly family protein YP_005687627.1 manually curated; KEGG: tva:TVAG_494990 hypothetical protein YP_005687628.1 KEGG: neu:NE1746 fimbrial protein pilin YP_005687629.1 KEGG: cno:NT01CX_1600 hypothetical protein YP_005687630.1 KEGG: mcd:MCRO_0480 hypothetical protein YP_005687631.1 PFAM: peptidase S14 ClpP; KEGG: cce:Ccel_1703 peptidase S14 ClpP YP_005687632.1 KEGG: tpd:Teth39_1196 hypothetical protein YP_005687633.1 KEGG: cce:Ccel_0601 cell divisionFtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase YP_005687634.1 KEGG: cce:Ccel_0603 hypothetical protein; PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_005687635.1 KEGG: cce:Ccel_0604 tetrahydrofolate dehydrogenase/cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_005687636.1 KEGG: dae:Dtox_1393 hypothetical protein YP_005687637.1 TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; K Homology, type 1, subgroup; KEGG: cce:Ccel_0605 RNA binding metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; KH domain protein YP_005687638.1 PFAM: metallophosphoesterase; KEGG: cce:Ccel_0606 metallophosphoesterase YP_005687639.1 PFAM: Stage V sporulation protein S; KEGG: bse:Bsel_1814 stage V sporulation protein S YP_005687640.1 KEGG: clj:CLJU_c18800 hypothetical protein YP_005687641.1 KEGG: aag:AaeL_AAEL003410 hypothetical protein YP_005687642.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: cbh:CLC_2000 dTDP-glucose 4,6-dehydratase YP_005687643.1 PFAM: glycosyl transferase group 1; KEGG: dae:Dtox_1092 glycosyl transferase group 1 YP_005687644.1 KEGG: dae:Dtox_1090 spore coat protein, CotS family; TIGRFAM: spore coat protein, CotS family; PFAM: aminoglycoside phosphotransferase YP_005687645.1 KEGG: dae:Dtox_1091 spore coat protein, CotS family; TIGRFAM: spore coat protein, CotS family; PFAM: aminoglycoside phosphotransferase YP_005687646.1 KEGG: ath:AT4G20810 transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein YP_005687647.1 KEGG: tva:TVAG_087170 viral A-type inclusion protein YP_005687648.1 KEGG: hmo:HM1_2795 hypothetical protein YP_005687649.1 PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; KEGG: cce:Ccel_1940 nucleotidyl transferase YP_005687650.1 KEGG: ate:Athe_1149 hypothetical protein YP_005687651.1 KEGG: bpy:Bphyt_4124 transcriptional regulator, LysR family YP_005687652.1 PFAM: protein of unknown function DUF881; KEGG: cce:Ccel_0569 protein of unknown function DUF881 YP_005687653.1 PFAM: protein of unknown function DUF881; KEGG: cce:Ccel_0570 protein of unknown function DUF881 YP_005687654.1 KEGG: cce:Ccel_0571 polysaccharide deacetylase; TIGRFAM: delta-lactam-biosynthetic de-N-acetylase; PFAM: polysaccharide deacetylase YP_005687655.1 KEGG: cce:Ccel_0572 sporulation protein YqfC YP_005687656.1 KEGG: cce:Ccel_0573 sporulation protein YqfD; TIGRFAM: sporulation protein YqfD; PFAM: stage IV sporulation YqfD YP_005687657.1 PFAM: PhoH family protein; KEGG: cce:Ccel_0574 PhoH family protein YP_005687658.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase 7TM intracellular region; metal-dependent phosphohydrolase HD sub domain; KEGG: cce:Ccel_0575 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region YP_005687659.1 PFAM: protein of unknown function UPF0054; KEGG: cce:Ccel_0576 protein of unknown function UPF0054 YP_005687660.1 KEGG: ckr:CKR_0828 cytidine deaminase; TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding YP_005687661.1 KEGG: cce:Ccel_0579 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein YP_005687662.1 KEGG: cce:Ccel_0580 hypothetical protein YP_005687663.1 KEGG: cce:Ccel_0581 DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO YP_005687664.1 PFAM: type IV pilus assembly PilZ; KEGG: ddf:DEFDS_0952 type IV pilus assembly protein PilZ YP_005687665.1 KEGG: cce:Ccel_1684 aminotransferase class V; PFAM: aminotransferase class V YP_005687666.1 KEGG: cce:Ccel_1683 thiamine biosynthesis/tRNA modification protein ThiI; TIGRFAM: thiamine biosynthesis/tRNA modification protein ThiI; PFAM: Thiamine biosynthesis protein-like; THUMP domain-containing protein YP_005687667.1 PFAM: VanW family protein; G5 domain protein; KEGG: tte:TTE1768 hypothetical protein YP_005687668.1 PFAM: Protein of unknown function DUF2225; KEGG: cce:Ccel_1682 hypothetical protein YP_005687669.1 PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: cce:Ccel_1681 AIR synthase related protein domain protein YP_005687670.1 KEGG: cce:Ccel_1680 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase YP_005687671.1 PFAM: PspC domain protein; KEGG: mvo:Mvol_0264 phage shock protein C, PspC YP_005687672.1 KEGG: cce:Ccel_1711 transglutaminase domain protein; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein YP_005687673.1 PFAM: protein of unknown function DUF58; KEGG: cce:Ccel_1710 protein of unknown function DUF58 YP_005687674.1 PFAM: ATPase associated with various cellular activities AAA_3; KEGG: cce:Ccel_1709 ATPase associated with various cellular activities AAA_3 YP_005687675.1 KEGG: cce:Ccel_2485 L-lactate dehydrogenase; TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase YP_005687676.1 SMART: molybdopterin binding domain; manually curated; TIGRFAM: competence/damage-inducible protein CinA; molybdenum cofactor synthesis domain protein; KEGG: cce:Ccel_0674 competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain YP_005687677.1 KEGG: cce:Ccel_0675 integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein YP_005687678.1 TIGRFAM: recA protein; PFAM: RecA domain protein; KEGG: cce:Ccel_0676 RecA protein; SMART: AAA ATPase YP_005687679.1 PFAM: regulatory protein RecX; KEGG: cce:Ccel_0677 regulatory protein RecX YP_005687680.1 KEGG: cce:Ccel_1860 rhomboid family protein; PFAM: Rhomboid family protein; SMART: Tetratricopeptide repeat YP_005687681.1 KEGG: pkn:PKH_021530 hypothetical protein YP_005687682.1 PFAM: extracellular solute-binding protein family 1; KEGG: gym:GYMC10_3306 extracellular solute-binding protein family 1 YP_005687683.1 KEGG: msm:MSMEG_2631 MATE efflux family protein YP_005687684.1 KEGG: sde:Sde_2333 hypothetical protein YP_005687685.1 KEGG: tet:TTHERM_00019670 hypothetical protein YP_005687686.1 KEGG: sto:ST1713 hypothetical protein YP_005687687.1 KEGG: cce:Ccel_1726 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_005687688.1 KEGG: cce:Ccel_1954 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta YP_005687689.1 KEGG: cce:Ccel_1979 ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20 YP_005687690.1 TIGRFAM: spore protease; KEGG: cce:Ccel_1978 germination protease; PFAM: peptidase M63 germination protease YP_005687691.1 KEGG: cce:Ccel_1350 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_005687692.1 KEGG: cce:Ccel_1977 hypothetical protein YP_005687693.1 SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein; TIGRFAM: DNA ligase, NAD-dependent; KEGG: tpd:Teth39_1694 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; BRCT domain protein YP_005687695.1 KEGG: cce:Ccel_0473 prolipoprotein diacylglyceryl transferase YP_005687696.1 KEGG: tte:TTE0606 aspartyl/glutamyl-tRNA amidotransferase subunit C; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit YP_005687697.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; KEGG: ate:Athe_0761 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase YP_005687698.1 KEGG: ate:Athe_0762 aspartyl/glutamyl-tRNA amidotransferase subunit B; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; Asn/Gln amidotransferase YP_005687699.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: cce:Ccel_3209 tetratricopeptide TPR_2 repeat protein YP_005687700.1 KEGG: cce:Ccel_2137 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase YP_005687701.1 KEGG: cce:Ccel_2136 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase YP_005687702.1 PFAM: protein of unknown function DUF177; KEGG: cce:Ccel_2135 protein of unknown function DUF177 YP_005687703.1 KEGG: cce:Ccel_2134 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein YP_005687704.1 PFAM: protein of unknown function DUF512; Radical SAM domain protein; PDZ/DHR/GLGF domain protein; KEGG: cce:Ccel_2132 protein of unknown function DUF512 YP_005687705.1 KEGG: cce:Ccel_2131 GTP-binding protein EngA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related YP_005687706.1 PFAM: protein of unknown function DUF205; KEGG: cce:Ccel_2130 protein of unknown function DUF205 YP_005687707.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: cce:Ccel_2129 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_005687708.1 KEGG: amt:Amet_2854 sporulation stage IV, protein A; TIGRFAM: stage IV sporulation protein A; PFAM: Sporulation stage IV protein A YP_005687709.1 PFAM: extracellular solute-binding protein family 1; KEGG: ttj:TTHB082 sugar ABC transporter, periplasmic sugar-binding protein YP_005687710.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tth:TT_P0040 putative transmembrane sugar transport protein YP_005687711.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ttj:TTHB086 sugar ABC transporter, permease protein YP_005687712.1 manually curated; KEGG: cce:Ccel_1467 hypothetical protein YP_005687713.1 KEGG: cce:Ccel_1350 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; copper amine oxidase-like domain-containing protein; SMART: cell wall hydrolase/autolysin YP_005687714.1 KEGG: cce:Ccel_1185 hypothetical protein YP_005687715.1 KEGG: tet:TTHERM_00520920 RNB-like protein YP_005687716.1 TIGRFAM: MutS2 family protein; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; KEGG: cce:Ccel_1470 MutS2 family protein; SMART: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; MutS III domain protein YP_005687717.1 KEGG: cce:Ccel_3372 sporulation integral membrane protein YtvI; TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118 YP_005687718.1 KEGG: tmt:Tmath_1108 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; TIGRFAM: RNA polymerase sigma-K factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein YP_005687719.1 KEGG: cce:Ccel_1486 penicillin-binding protein transpeptidase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_005687720.1 PFAM: peptidase U32; KEGG: cce:Ccel_1474 peptidase U32 YP_005687721.1 PFAM: O-methyltransferase family 3; KEGG: cce:Ccel_1473 O-methyltransferase family 3 YP_005687722.1 PFAM: aminodeoxychorismate lyase; KEGG: cce:Ccel_1472 aminodeoxychorismate lyase YP_005687723.1 KEGG: cce:Ccel_1471 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein YP_005687724.1 KEGG: cce:Ccel_0442 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2 YP_005687725.1 KEGG: cce:Ccel_0443 elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein YP_005687726.1 KEGG: amt:Amet_2687 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_005687727.1 KEGG: cce:Ccel_0445 ribosome recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor YP_005687728.1 KEGG: cce:Ccel_0446 hypothetical protein YP_005687729.1 TIGRFAM: undecaprenyl diphosphate synthase; KEGG: cce:Ccel_0447 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_005687730.1 KEGG: cce:Ccel_0448 phosphatidate cytidylyltransferase; manually curated; PFAM: phosphatidate cytidylyltransferase YP_005687731.1 TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: cce:Ccel_0449 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain-containing protein YP_005687732.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: cce:Ccel_0450 membrane-associated zinc metalloprotease; SMART: PDZ/DHR/GLGF domain protein YP_005687733.1 KEGG: cce:Ccel_0451 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein YP_005687734.1 SMART: Exonuclease; phosphoesterase PHP domain protein; manually curated; KEGG: cce:Ccel_0452 DNA polymerase III PolC; TIGRFAM: DNA polymerase III, alpha subunit; DNA polymerase III, epsilon subunit; PFAM: DNA polymerase III alpha subunit; Exonuclease RNase T and DNA polymerase III; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type YP_005687735.1 manually curated YP_005687736.1 KEGG: cce:Ccel_0453 protein of unknown function DUF150; manually curated; PFAM: protein of unknown function DUF150 YP_005687737.1 TIGRFAM: transcription termination factor NusA; PFAM: NusA domain-containing protein; RNA binding S1 domain protein; KEGG: cce:Ccel_0454 NusA antitermination factor; SMART: KH domain protein YP_005687738.1 PFAM: protein of unknown function DUF448; KEGG: cce:Ccel_0455 protein of unknown function DUF448 YP_005687739.1 PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: cce:Ccel_0456 ribosomal protein L7Ae/L30e/S12e/Gadd45 YP_005687740.1 manually curated; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; KEGG: cce:Ccel_0457 translation initiation factor IF-2; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain-containing protein; elongation factor Tu domain 2 protein YP_005687741.1 manually curated; TIGRFAM: ribosome-binding factor A; KEGG: cce:Ccel_0458 ribosome-binding factor A; PFAM: ribosome-binding factor A YP_005687742.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cce:Ccel_0459 phosphoesterase RecJ domain protein YP_005687743.1 KEGG: amt:Amet_2670 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein YP_005687744.1 KEGG: cce:Ccel_0461 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase YP_005687745.1 KEGG: cwo:Cwoe_2766 membrane protein YP_005687746.1 PFAM: peptidase M16 domain protein; KEGG: cce:Ccel_0471 peptidase M16 domain protein YP_005687747.1 KEGG: cce:Ccel_0472 peptidase M16 domain protein; manually curated; PFAM: peptidase M16 domain protein YP_005687748.1 KEGG: cce:Ccel_0473 prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase YP_005687749.1 KEGG: amt:Amet_2889 hypothetical protein YP_005687750.1 KEGG: cce:Ccel_0474 rod shape-determining protein RodA; TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein YP_005687751.1 KEGG: cce:Ccel_0475 cell division protein MraZ; TIGRFAM: MraZ protein; PFAM: MraZ domain YP_005687752.1 KEGG: cce:Ccel_0476 S-adenosyl-methyltransferase MraW; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase YP_005687753.1 KEGG: cce:Ccel_0477 cell division protein FtsL YP_005687754.1 KEGG: cce:Ccel_0478 penicillin-binding protein transpeptidase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; SMART: PASTA domain containing protein YP_005687755.1 KEGG: cce:Ccel_0479 UDP-N-acetylmuramyl-tripeptide synthetase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_005687756.1 KEGG: cce:Ccel_0480 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D -alanyl ligase; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_005687757.1 KEGG: cce:Ccel_0481 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_005687758.1 KEGG: cce:Ccel_0482 cell division protein FtsW; TIGRFAM: stage V sporulation protein E; cell division protein FtsW; PFAM: cell cycle protein YP_005687759.1 KEGG: cce:Ccel_0483 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain YP_005687760.1 KEGG: aoe:Clos_1380 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_005687761.1 KEGG: pfa:PF14_0372 conserved Plasmodium protein, unknown function YP_005687762.1 PFAM: transposase mutator type; KEGG: tpd:Teth39_2032 transposase, mutator type YP_005687763.1 PFAM: UvrD/REP helicase; KEGG: ctc:CTC00692 DNA helicase II YP_005687764.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: tjr:TherJR_1257 copper amine oxidase domain protein YP_005687765.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: tpd:Teth39_1505 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_005687766.1 PFAM: amino acid-binding ACT domain protein; KEGG: cce:Ccel_0524 amino acid-binding ACT domain protein YP_005687767.1 PFAM: dihydrodipicolinate reductase; manually curated; KEGG: cce:Ccel_0525 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase YP_005687768.1 TIGRFAM: dihydrodipicolinate synthase; KEGG: cce:Ccel_0526 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_005687769.1 PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; manually curated; KEGG: csc:Csac_1584 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase YP_005687770.1 KEGG: cce:Ccel_0527 SpoIID/LytB domain protein; TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation protein D YP_005687771.1 KEGG: cce:Ccel_0529 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein YP_005687772.1 TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; KEGG: cce:Ccel_0530 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_005687773.1 KEGG: clo:HMPREF0868_0865 preprotein translocase, YajC subunit; TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein YP_005687774.1 KEGG: tjr:TherJR_0882 carbohydrate-binding family 25 protein YP_005687775.1 KEGG: cce:Ccel_0532 hypothetical protein YP_005687776.1 PFAM: phosphoribosyltransferase; KEGG: cce:Ccel_0611 phosphoribosyltransferase YP_005687777.1 KEGG: hmg:100198067 similar to Helicase conserved C-terminal domain containing protein YP_005687778.1 TIGRFAM: aspartate carbamoyltransferase; KEGG: cce:Ccel_0612 aspartate carbamoyltransferase catalytic subunit; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region YP_005687779.1 TIGRFAM: dihydroorotase, multifunctional complex type; KEGG: cce:Ccel_0613 dihydroorotase, multifunctional complex type; PFAM: amidohydrolase YP_005687780.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: cce:Ccel_0614 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_005687781.1 KEGG: cce:Ccel_0615 carbamoyl-phosphate synthase, small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I YP_005687782.1 manually curated; TIGRFAM: carbamoyl-phosphate synthase, large subunit; KEGG: cce:Ccel_0616 carbamoyl phosphate synthase large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein YP_005687783.1 PFAM: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cce:Ccel_0617 oxidoreductase FAD/NAD(P)-binding domain protein YP_005687784.1 KEGG: cce:Ccel_0618 dihydroorotate dehydrogenase family protein; TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate oxidase YP_005687785.1 PFAM: Phosphoglycerate mutase; KEGG: cce:Ccel_0619 phosphoglycerate mutase YP_005687786.1 PFAM: metallophosphoesterase; KEGG: bha:BH2382 hypothetical protein YP_005687787.1 PFAM: Rad50 zinc hook domain protein; KEGG: dae:Dtox_1391 SMC domain protein YP_005687788.1 manually curated; KEGG: fma:FMG_0754 hypothetical protein YP_005687789.1 SMART: Elongator protein 3/MiaB/NifB; manually curated; KEGG: cce:Ccel_0678 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein YP_005687790.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: cce:Ccel_0679 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_005687791.1 KEGG: bcg:BCG9842_B5644 putative cell wall endopeptidase, NlpC/P60 family YP_005687792.1 KEGG: mac:MA3842 cell surface protein YP_005687793.1 PFAM: regulatory protein DeoR; KEGG: cce:Ccel_0680 fatty acid biosynthesis transcriptional regulator YP_005687794.1 KEGG: cce:Ccel_0681 fatty acid/phospholipid synthesis protein PlsX; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein YP_005687795.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: cce:Ccel_0682 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_005687796.1 KEGG: cce:Ccel_0683 malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase YP_005687797.1 KEGG: cce:Ccel_0684 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR YP_005687798.1 KEGG: tmt:Tmath_1329 acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding YP_005687799.1 KEGG: cce:Ccel_0686 3-oxoacyl-(acyl-carrier-protein) synthase 2; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase YP_005687800.1 SMART: ribonuclease III; double-stranded RNA binding domain protein; TIGRFAM: ribonuclease III; KEGG: aoe:Clos_1458 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein YP_005687801.1 KEGG: cce:Ccel_0688 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_005687802.1 PFAM: Stage V sporulation protein S; KEGG: cno:NT01CX_2217 stage V sporulation protein S YP_005687803.1 TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: cno:NT01CX_0635 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_005687804.1 KEGG: cce:Ccel_0696 chromosome segregation protein SMC; TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain-containing protein YP_005687805.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: cce:Ccel_0697 signal recognition particle-docking protein FtsY; SMART: AAA ATPase YP_005687806.1 PFAM: protein of unknown function DUF218; KEGG: sli:Slin_3912 protein of unknown function DUF218 YP_005687807.1 KEGG: cbl:CLK_0653 hypothetical protein YP_005687808.1 KEGG: cbf:CLI_1292 hypothetical protein YP_005687809.1 KEGG: dhd:Dhaf_0187 diaminopimelate dehydrogenase; TIGRFAM: diaminopimelate dehydrogenase YP_005687810.1 KEGG: dae:Dtox_3521 hypothetical protein YP_005687811.1 KEGG: cbe:Cbei_1606 fibronectin, type III domain-containing protein YP_005687812.1 KEGG: cce:Ccel_1666 transposase IS3/IS911 family protein; manually curated; PFAM: transposase IS3/IS911 family protein YP_005687813.1 KEGG: cbe:Cbei_1606 fibronectin, type III domain-containing protein YP_005687814.1 PFAM: Dockerin type 1; KEGG: cbe:Cbei_1606 fibronectin, type III domain-containing protein YP_005687815.1 TIGRFAM: glutaminyl-tRNA synthetase; KEGG: pth:PTH_2867 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain YP_005687816.1 KEGG: gym:GYMC10_5077 hypothetical protein YP_005687817.1 KEGG: fps:FP1116 hypothetical protein YP_005687818.1 KEGG: lba:Lebu_1821 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2339, transmembrane YP_005687819.1 manually curated; PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; Dockerin type 1; esterase; KEGG: cpy:Cphy_0624 endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10 YP_005687820.1 PFAM: protein of unknown function DUF152; KEGG: cce:Ccel_0607 protein of unknown function DUF152 YP_005687822.1 PFAM: extracellular solute-binding protein family 5; KEGG: cce:Ccel_0608 extracellular solute-binding protein family 5 YP_005687823.1 KEGG: cce:Ccel_0609 lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II YP_005687824.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: cce:Ccel_0610 pseudouridine synthase, RluA family; SMART: RNA-binding S4 domain protein YP_005687825.1 manually curated; KEGG: cce:Ccel_0533 hypothetical protein YP_005687826.1 PFAM: Radical SAM domain protein; KEGG: cce:Ccel_0534 radical SAM domain protein YP_005687827.1 KEGG: ctc:CTC00912 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain YP_005687828.1 KEGG: cce:Ccel_0536 protein-export membrane protein SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein YP_005687829.1 KEGG: cce:Ccel_0537 protein-export membrane protein SecF; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein YP_005687830.1 TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; KEGG: cno:NT01CX_1071 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase YP_005687831.1 KEGG: csc:Csac_2709 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_005687832.1 TIGRFAM: aspartate 1-decarboxylase; KEGG: pth:PTH_0222 aspartate alpha-decarboxylase; PFAM: aspartate decarboxylase YP_005687833.1 KEGG: bbe:BBR47_12230 hypothetical protein YP_005687834.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: hor:Hore_22020 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region YP_005687835.1 TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: csc:Csac_0881 deoxyguanosinetriphosphate triphosphohydrolase-like protein; SMART: metal-dependent phosphohydrolase HD region YP_005687837.1 TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; TOPRIM domain-containing protein; DNA primase, DnaB-helicase binding domain; KEGG: cce:Ccel_0540 DNA primase; SMART: Toprim sub domain-containing protein YP_005687838.1 KEGG: cce:Ccel_0541 RNA polymerase sigma factor RpoD; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein YP_005687839.1 KEGG: cce:Ccel_2869 hypothetical protein YP_005687840.1 KEGG: pvx:PVX_116590 hypothetical protein YP_005687841.1 PFAM: protein of unknown function DUF633; KEGG: cce:Ccel_0543 protein of unknown function DUF633 YP_005687842.1 PFAM: protein of unknown function DUF34; KEGG: tjr:TherJR_2297 protein of unknown function DUF34 YP_005687843.1 KEGG: cyn:Cyan7425_0749 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_005687844.1 KEGG: sth:STH845 RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein YP_005687845.1 KEGG: tmt:Tmath_0849 putative transmembrane anti-sigma factor YP_005687846.1 PFAM: type IV pilus assembly PilZ; KEGG: cac:CA_C1485 cell wall biosynthesis glycosyltransferase YP_005687847.1 KEGG: hmg:100214601 similar to claspin YP_005687848.1 TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; KEGG: cce:Ccel_2075 DNA polymerase I; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; 3'-5' exonuclease; DNA-directed DNA polymerase YP_005687849.1 TIGRFAM: dephospho-CoA kinase; KEGG: cce:Ccel_2074 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_005687850.1 PFAM: Lytic transglycosylase catalytic; KEGG: cbf:CLI_3066 transglycosylase SLT domain-containing protein YP_005687851.1 KEGG: cce:Ccel_0091 regulatory protein, MerR YP_005687852.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: csc:Csac_0785 hypothetical protein YP_005687853.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: gme:Gmet_1298 diguanylate cyclase with GAF sensor; SMART: GGDEF domain containing protein YP_005687854.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: cce:Ccel_2071 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_005687855.1 KEGG: cce:Ccel_0588 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_005687856.1 KEGG: cce:Ccel_0590 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related YP_005687857.1 KEGG: nmu:Nmul_A0278 glycosyl transferase family protein YP_005687858.1 TIGRFAM: anthranilate synthase component I; KEGG: pjd:Pjdr2_2417 anthranilate synthase component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein YP_005687859.1 KEGG: afn:Acfer_0282 glutamine amidotransferase of anthranilate synthase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I YP_005687860.1 KEGG: amt:Amet_1079 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like YP_005687861.1 KEGG: clj:CLJU_c16100 indole-3-glycerol phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase YP_005687862.1 KEGG: tmt:Tmath_1419 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) YP_005687863.1 PFAM: NADPH-dependent FMN reductase; KEGG: cce:Ccel_0549 NADPH-dependent FMN reductase YP_005687865.1 KEGG: cce:Ccel_0551 hypothetical protein YP_005687866.1 PFAM: type IV pilus assembly PilZ; KEGG: pcb:PC000378.02.0 hypothetical protein YP_005687867.1 KEGG: cce:Ccel_0553 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_005687868.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cce:Ccel_0554 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein YP_005687869.1 PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: cce:Ccel_0555 thiamine pyrophosphate protein domain protein TPP-binding YP_005687870.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: cce:Ccel_0556 pyruvate ferredoxin/flavodoxin oxidoreductase YP_005687871.1 PFAM: glutamine synthetase catalytic region; KEGG: tpd:Teth39_1666 glutamine synthetase, catalytic region YP_005687872.1 KEGG: cce:Ccel_0563 hypothetical protein YP_005687873.1 KEGG: cpf:CPF_2378 cell envelope-related function transcriptional attenuator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator YP_005687874.1 PFAM: Rubrerythrin; KEGG: ctc:CTC02638 rubrerythrin YP_005687875.1 KEGG: dhd:Dhaf_2898 hypothetical protein YP_005687876.1 PFAM: band 7 protein; KEGG: tjr:TherJR_2427 hypothetical protein YP_005687877.1 PFAM: protein of unknown function DUF107; KEGG: cbe:Cbei_1483 hypothetical protein YP_005687878.1 TIGRFAM: branched-chain amino acid aminotransferase; KEGG: cce:Ccel_1877 branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV YP_005687879.1 KEGG: cce:Ccel_0662 HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; TIGRFAM: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase YP_005687880.1 KEGG: cce:Ccel_0663 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase YP_005687881.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: cce:Ccel_2414 type II secretion system protein E YP_005687882.1 KEGG: cce:Ccel_2410 peptidase A24A domain protein; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV YP_005687883.1 PFAM: Late competence development protein ComFB; KEGG: cce:Ccel_0664 hypothetical protein YP_005687884.1 KEGG: cce:Ccel_1925 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domain-containing protein TIM barrel; SMART: AP endonuclease family 2 YP_005687885.1 TIGRFAM: 3-dehydroquinate dehydratase, type II; KEGG: cce:Ccel_1924 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II YP_005687886.1 PFAM: peptidase M24; creatinase; KEGG: cce:Ccel_1923 peptidase M24 YP_005687887.1 KEGG: cce:Ccel_1922 elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor KOW-like domain-containing protein; Elongation factor P/YeiP protein YP_005687888.1 KEGG: cce:Ccel_1921 hypothetical protein YP_005687889.1 PFAM: transposase IS200-family protein; KEGG: dhd:Dhaf_3832 transposase IS200-family protein YP_005687890.1 KEGG: cce:Ccel_1916 stage III sporulation protein AA; TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase YP_005687891.1 KEGG: cce:Ccel_1915 stage III sporulation protein AB; TIGRFAM: stage III sporulation protein AB; PFAM: Sporulation stage III protein AB YP_005687892.1 TIGRFAM: stage III sporulation protein AC; KEGG: cce:Ccel_1914 stage III sporulation protein AC YP_005687893.1 TIGRFAM: stage III sporulation protein AD; KEGG: amt:Amet_2495 sporulation stage III, protein AD YP_005687894.1 KEGG: cce:Ccel_1912 stage III sporulation protein AE; TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE YP_005687895.1 KEGG: cce:Ccel_1911 hypothetical protein; TIGRFAM: stage III sporulation protein AF; PFAM: Sporulation stage III protein AF YP_005687896.1 KEGG: cce:Ccel_1910 stage III sporulation protein AG YP_005687897.1 KEGG: cce:Ccel_1909 hypothetical protein YP_005687898.1 PFAM: protein of unknown function DUF322; KEGG: cce:Ccel_1908 protein of unknown function DUF322 YP_005687899.1 KEGG: cce:Ccel_1907 hypothetical protein YP_005687900.1 PFAM: Protein of unknown function DUF2273; KEGG: cce:Ccel_1906 hypothetical protein YP_005687901.1 KEGG: cce:Ccel_1905 NusB antitermination factor; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44 YP_005687902.1 TIGRFAM: exodeoxyribonuclease VII, large subunit; KEGG: cce:Ccel_1904 exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type YP_005687903.1 KEGG: cce:Ccel_1903 exodeoxyribonuclease VII, small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit YP_005687904.1 PFAM: Polyprenyl synthetase; KEGG: cce:Ccel_1902 polyprenyl synthetase YP_005687905.1 PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: aoe:Clos_1608 acid phosphatase/vanadium-dependent haloperoxidase related YP_005687906.1 KEGG: cce:Ccel_1901 hypothetical protein YP_005687907.1 KEGG: cce:Ccel_1900 deoxyxylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain-containing protein YP_005687908.1 TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: cce:Ccel_1899 hemolysin A; SMART: RNA-binding S4 domain protein YP_005687909.1 KEGG: cpe:CPE2521 hypothetical protein YP_005687910.1 PFAM: glycoside hydrolase family 9; Dockerin type 1; KEGG: cce:Ccel_0755 glycoside hydrolase family 9 YP_005687911.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: tjr:TherJR_0805 copper amine oxidase domain protein YP_005687912.1 PFAM: coagulation factor 5/8 type domain protein; Dockerin type 1; KEGG: cce:Ccel_0379 protein of unknown function DUF291 YP_005687913.1 KEGG: lsp:Bsph_3107 hypothetical protein YP_005687914.1 KEGG: cno:NT01CX_1186 hypothetical protein YP_005687915.1 KEGG: sti:Sthe_2079 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_005687916.1 KEGG: fps:FP0106 hypothetical protein YP_005687917.1 SMART: GGDEF domain containing protein; Tetratricopeptide repeat; TIGRFAM: diguanylate cyclase; KEGG: aoe:Clos_1186 diguanylate cyclase; PFAM: GGDEF domain containing protein; Serine/threonine-protein kinase-like domain; Tetratricopeptide TPR_1 repeat-containing protein YP_005687918.1 PFAM: ATP-NAD/AcoX kinase; KEGG: cce:Ccel_1898 ATP-NAD/AcoX kinase YP_005687919.1 KEGG: cce:Ccel_1897 arginine repressor, ArgR; TIGRFAM: arginine repressor; PFAM: Arginine repressor-like YP_005687920.1 KEGG: cce:Ccel_1896 DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein YP_005687921.1 TIGRFAM: stage IV sporulation protein B; KEGG: cce:Ccel_1895 stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB YP_005687922.1 TIGRFAM: sporulation transcription factor Spo0A; PFAM: Sporulation initiation factor Spo0A ; response regulator receiver; KEGG: cce:Ccel_1894 sporulation transcriptional activator Spo0A; SMART: response regulator receiver YP_005687923.1 KEGG: cbe:Cbei_4020 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_005687924.1 KEGG: dae:Dtox_0611 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein YP_005687925.1 KEGG: dae:Dtox_0612 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_005687926.1 PFAM: MCP methyltransferase CheR-type; KEGG: dae:Dtox_0614 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type YP_005687927.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: dae:Dtox_0615 response regulator receiver modulated CheB methylesterase; SMART: response regulator receiver YP_005687928.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; response regulator receiver; KEGG: swo:Swol_1328 signal transduction histidine kinase-like protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein YP_005687929.1 KEGG: swo:Swol_1327 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_005687930.1 KEGG: cce:Ccel_0592 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR YP_005687931.1 KEGG: cce:Ccel_0593 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase YP_005687933.1 KEGG: fal:FRAAL2802 precorrin 6A synthase YP_005687934.1 PFAM: transposase mutator type; KEGG: tpd:Teth39_2032 transposase, mutator type YP_005687935.1 KEGG: clj:CLJU_c04430 putative sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_005687936.1 KEGG: clj:CLJU_c04440 putative two-component response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_005687937.1 PFAM: lipolytic protein G-D-S-L family; Dockerin type 1; KEGG: cfl:Cfla_0383 ricin B lectin YP_005687938.1 PFAM: glycoside hydrolase family 5; Dockerin type 1; lipolytic protein G-D-S-L family; KEGG: cac:CA_C0826 endoglucanase family protein 5 YP_005687939.1 KEGG: tte:TTE1825 glycosidases; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; SMART: alpha amylase catalytic sub domain YP_005687940.1 PFAM: Aluminium resistance family protein; KEGG: cce:Ccel_0594 aluminium resistance family protein YP_005687941.1 KEGG: cce:Ccel_0595 hypothetical protein YP_005687942.1 PFAM: alanine racemase domain protein; KEGG: cce:Ccel_0596 alanine racemase domain protein YP_005687943.1 PFAM: protein of unknown function DUF552; KEGG: cce:Ccel_0597 protein of unknown function DUF552 YP_005687944.1 PFAM: protein of unknown function YGGT; KEGG: cce:Ccel_0598 protein of unknown function YGGT YP_005687945.1 KEGG: cce:Ccel_0599 RNA-binding S4 domain protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_005687946.1 KEGG: cce:Ccel_0600 DivIVA family protein; TIGRFAM: DivIVA domain; PFAM: DivIVA family protein YP_005687947.1 KEGG: cce:Ccel_1855 isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase YP_005687948.1 KEGG: cce:Ccel_1854 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase YP_005687949.1 KEGG: tet:TTHERM_01093530 hypothetical protein YP_005687950.1 KEGG: cce:Ccel_0620 hypothetical protein YP_005687951.1 TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: cce:Ccel_1699 RNA modification enzyme, MiaB family; SMART: Elongator protein 3/MiaB/NifB YP_005687952.1 PFAM: protein of unknown function DUF534; KEGG: pca:Pcar_1057 hypothetical protein YP_005687953.1 KEGG: btb:BMB171_C0478 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_005687954.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dhd:Dhaf_2153 GCN5-related N-acetyltransferase YP_005687955.1 KEGG: dth:DICTH_0356 phosphorylated carbohydrates phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_005687956.1 KEGG: aoe:Clos_0300 copper amine oxidase domain-containing protein; PFAM: copper amine oxidase-like domain-containing protein; SCP-like extracellular; SMART: Allergen V5/Tpx-1 family protein YP_005687957.1 KEGG: cce:Ccel_1698 hypothetical protein YP_005687958.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: MutS III domain protein; DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; KEGG: cce:Ccel_1697 DNA mismatch repair protein MutS; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein YP_005687959.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; KEGG: cce:Ccel_1696 DNA mismatch repair protein MutL; SMART: MutL dimerisation; ATP-binding region ATPase domain protein YP_005687960.1 TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: cce:Ccel_1695 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_005687961.1 KEGG: cce:Ccel_1694 RNA chaperone Hfq; TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core YP_005687962.1 KEGG: cce:Ccel_1693 SOS-response transcriptional repressor, LexA; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; Peptidase S24/S26A/S26B, conserved region YP_005687963.1 PFAM: Peptidoglycan-binding lysin domain; KEGG: cce:Ccel_1692 peptidoglycan-binding LysM YP_005687964.1 PFAM: helix-turn-helix protein YlxM/p13 family protein; KEGG: cce:Ccel_0708 putative helix-turn-helix protein YlxM/p13 family protein YP_005687965.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; KEGG: cce:Ccel_0709 signal recognition particle protein; SMART: AAA ATPase YP_005687966.1 KEGG: cce:Ccel_0710 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16 YP_005687967.1 KEGG: cce:Ccel_0711 nucleic acid binding protein YP_005687968.1 KEGG: cce:Ccel_0712 16S rRNA-processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein YP_005687969.1 TIGRFAM: tRNA (guanine-N1)-methyltransferase; KEGG: cce:Ccel_0713 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_005687970.1 KEGG: cce:Ccel_0714 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19 YP_005687971.1 KEGG: cbi:CLJ_B0662 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region YP_005687972.1 KEGG: cce:Ccel_0716 GTP1/OBG protein; TIGRFAM: ribosome biogenesis GTP-binding protein YlqF; PFAM: GTP-binding protein HSR1-related YP_005687973.1 KEGG: ckr:CKR_3110 hypothetical protein YP_005687974.1 KEGG: cce:Ccel_0717 ribonuclease HII; PFAM: ribonuclease HII/HIII YP_005687975.1 KEGG: cce:Ccel_0718 hypothetical protein YP_005687976.1 PFAM: type III secretion exporter; KEGG: cce:Ccel_0719 flagellar biosynthesis protein YP_005687977.1 PFAM: Uncharacterised protein family UPF0102; KEGG: cce:Ccel_0720 hypothetical protein YP_005687978.1 KEGG: csc:Csac_0787 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC YP_005687979.1 KEGG: cce:Ccel_0721 peptidase M19 renal dipeptidase; PFAM: peptidase M19 renal dipeptidase YP_005687980.1 PFAM: aminotransferase class I and II; KEGG: hmo:HM1_1327 aspartate aminotransferase YP_005687981.1 KEGG: pjd:Pjdr2_4681 hypothetical protein YP_005687982.1 KEGG: pcb:PC000183.01.0 hypothetical protein YP_005687983.1 KEGG: mba:Mbar_A2460 hypothetical protein YP_005687984.1 KEGG: cpy:Cphy_0898 XRE family transcriptional regulator; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_005687985.1 TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; KEGG: cpy:Cphy_0897 spermidine/putrescine ABC transporter ATPase subunit; SMART: AAA ATPase YP_005687986.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0890 binding-protein-dependent transport systems inner membrane component YP_005687987.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0891 binding-protein-dependent transport systems inner membrane component YP_005687988.1 PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_0894 extracellular solute-binding protein YP_005687989.1 PFAM: Peptidase S7 flavivirus helicase (NS3); KEGG: amr:AM1_5342 hypothetical protein YP_005687990.1 PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; Dockerin type 1; KEGG: cce:Ccel_0731 glycoside hydrolase family 9 YP_005687991.1 KEGG: cpy:Cphy_1188 peptidase S41; PFAM: copper amine oxidase-like domain-containing protein; peptidase S41; SMART: peptidase S41 YP_005687992.1 KEGG: ere:EUBREC_0466 hypothetical protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_005687993.1 KEGG: dpe:Dper_GL16897 GL16897 gene product from transcript GL16897-RA YP_005687994.1 KEGG: cce:Ccel_0723 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Adenylosuccinate lyase-like; fumarate lyase YP_005687995.1 KEGG: cce:Ccel_0724 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain-containing protein; SMART: regulatory protein GntR HTH YP_005687996.1 KEGG: cce:Ccel_2463 pyrrolo-quinoline quinone YP_005687997.1 KEGG: cce:Ccel_1715 copper ion binding protein; TIGRFAM: copper ion binding protein; PFAM: Heavy metal transport/detoxification protein YP_005687999.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: dae:Dtox_0929 4'-phosphopantetheinyl transferase YP_005688000.1 PFAM: cellulosome anchoring protein cohesin region; KEGG: ate:Athe_1866 mannan endo-1,4-beta-mannosidase., cellulase YP_005688001.1 PFAM: cellulosome anchoring protein cohesin region; KEGG: bbz:BbuZS7_I25 putative surface antigen YP_005688002.1 PFAM: Peptidase M23; KEGG: cce:Ccel_2905 peptidase M23 YP_005688003.1 PFAM: type IV pilus assembly PilZ; KEGG: cce:Ccel_2317 type IV pilus assembly PilZ YP_005688004.1 TIGRFAM: chorismate synthase; KEGG: cce:Ccel_2427 chorismate synthase; PFAM: chorismate synthase YP_005688005.1 KEGG: mhu:Mhun_1850 shikimate kinase; PFAM: shikimate kinase YP_005688006.1 KEGG: amt:Amet_1997 hypothetical protein YP_005688007.1 PFAM: Dockerin type 1; KEGG: amt:Amet_1994 hypothetical protein YP_005688008.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cce:Ccel_1654 site-specific tyrosine recombinase XerC YP_005688009.1 KEGG: cce:Ccel_0666 cell envelope-related transcriptional attenuator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator YP_005688010.1 PFAM: peptidase M18 aminopeptidase I; KEGG: cce:Ccel_1926 putative aminopeptidase 1 YP_005688011.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; KEGG: drt:Dret_0887 response regulator receiver modulated metal dependent phosphohydrolase; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region YP_005688012.1 TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; KEGG: csc:Csac_2251 HisJ family histidinol phosphate phosphatase; SMART: phosphoesterase PHP domain protein YP_005688013.1 TIGRFAM: tyrosyl-tRNA synthetase; KEGG: tpd:Teth39_0108 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein YP_005688014.1 TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: cce:Ccel_1930 tRNA-specific 2-thiouridylase MnmA YP_005688015.1 KEGG: cce:Ccel_1931 FeS cluster assembly scaffold protein NifU; TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein YP_005688016.1 TIGRFAM: cysteine desulfurase NifS; KEGG: cce:Ccel_1932 cysteine desulfurase NifS; PFAM: aminotransferase class V YP_005688017.1 KEGG: cce:Ccel_1933 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_005688018.1 KEGG: cce:Ccel_1934 hypothetical protein YP_005688019.1 KEGG: cce:Ccel_1935 hypothetical protein YP_005688020.1 PFAM: MCP methyltransferase CheR-type; KEGG: cce:Ccel_1727 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type YP_005688021.1 PFAM: nucleoside diphosphate kinase; KEGG: apo:Arcpr_0498 nucleoside-diphosphate kinase; SMART: nucleoside diphosphate kinase YP_005688022.1 KEGG: csc:Csac_1308 S-adenosylmethionine decarboxylase proenzyme; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related YP_005688023.1 KEGG: cce:Ccel_1728 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; RNA binding S1 domain protein YP_005688024.1 TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: bbe:BBR47_24420 1-acylglycerol-3-phosphate O-acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_005688025.1 KEGG: cce:Ccel_1729 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_005688026.1 KEGG: cce:Ccel_1730 chorismate mutase; TIGRFAM: chorismate mutase; PFAM: Chorismate mutase of the AroH class YP_005688027.1 manually curated; KEGG: cce:Ccel_1731 hypothetical protein YP_005688028.1 KEGG: cce:Ccel_1732 hypothetical protein YP_005688029.1 PFAM: HI0933 family protein; KEGG: cce:Ccel_1733 HI0933 family protein YP_005688030.1 KEGG: ate:Athe_1322 phosphoglycerate mutase; manually curated; PFAM: Phosphoglycerate mutase YP_005688031.1 PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: cce:Ccel_1734 transcriptional regulator, RpiR family YP_005688032.1 KEGG: ate:Athe_1320 hypothetical protein YP_005688033.1 KEGG: cce:Ccel_1735 hypothetical protein YP_005688034.1 manually curated; KEGG: amt:Amet_0245 hypothetical protein YP_005688035.1 KEGG: dhd:Dhaf_0979 hypothetical protein YP_005688036.1 PFAM: Conserved carboxylase region; pyruvate carboxyltransferase; KEGG: cce:Ccel_1736 oxaloacetate decarboxylase YP_005688037.1 KEGG: aoe:Clos_0442 biotin/lipoyl attachment domain-containing protein; manually curated; PFAM: biotin/lipoyl attachment domain-containing protein YP_005688038.1 KEGG: tmt:Tmath_2009 sodium pump decarboxylase gamma subunit YP_005688039.1 PFAM: carboxyl transferase; KEGG: cce:Ccel_1738 carboxyl transferase YP_005688040.1 PFAM: type IV pilus assembly PilZ; KEGG: tte:TTE1419 hypothetical protein YP_005688041.1 PFAM: rRNA methylase; KEGG: cce:Ccel_1741 putative rRNA methylase YP_005688042.1 KEGG: dae:Dtox_3566 agmatinase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase YP_005688043.1 KEGG: ate:Athe_1314 spermidine synthase; TIGRFAM: spermidine synthase; PFAM: Spermine synthase YP_005688044.1 KEGG: cce:Ccel_1743 pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_005688045.1 KEGG: cce:Ccel_1744 sporulation protein YtfJ; TIGRFAM: sporulation protein YtfJ; PFAM: Sporulation protein YtfJ YP_005688046.1 KEGG: hor:Hore_07190 hypothetical protein YP_005688047.1 PFAM: RDD domain containing protein; KEGG: cpy:Cphy_1188 peptidase S41 YP_005688048.1 KEGG: cce:Ccel_1746 chromosome segregation and condensation protein, ScpB; TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB YP_005688049.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: cce:Ccel_1747 chromosome segregation and condensation protein ScpA YP_005688050.1 TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: csc:Csac_0937 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_005688051.1 PFAM: peptidase M50; KEGG: drt:Dret_0766 peptidase M50 YP_005688052.1 KEGG: tjr:TherJR_1640 polynucleotide adenylyltransferase region; PFAM: CBS domain containing protein; phosphoesterase RecJ domain protein; phosphoesterase DHHA1; Polynucleotide adenylyltransferase region; SMART: CBS domain containing protein YP_005688053.1 KEGG: csc:Csac_0935 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_005688054.1 KEGG: pdi:BDI_3154 putative Na+-dependent phosphate transporter YP_005688055.1 KEGG: bbe:BBR47_06650 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein YP_005688056.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: csc:Csac_0612 lysine exporter protein LysE/YggA YP_005688057.1 KEGG: cce:Ccel_1749 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein YP_005688058.1 TIGRFAM: pyrimidine-nucleoside phosphorylase; KEGG: ckr:CKR_1140 hypothetical protein; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; Pyrimidine nucleoside phosphorylase domain YP_005688059.1 TIGRFAM: phosphopentomutase; KEGG: chy:CHY_1963 phosphopentomutase; PFAM: metalloenzyme domain protein YP_005688060.1 KEGG: cce:Ccel_1751 tyrosine recombinase XerD; TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein YP_005688061.1 KEGG: cce:Ccel_1752 stage II sporulation protein M; TIGRFAM: stage II sporulation protein M; PFAM: protein of unknown function DUF95 transmembrane YP_005688062.1 PFAM: NUDIX hydrolase; KEGG: cce:Ccel_1753 NUDIX hydrolase YP_005688063.1 KEGG: cce:Ccel_1754 ribonuclease H; PFAM: ribonuclease H YP_005688064.1 TIGRFAM: pyrroline-5-carboxylate reductase; KEGG: cce:Ccel_1755 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_005688065.1 KEGG: amt:Amet_4410 hypothetical protein YP_005688066.1 KEGG: cce:Ccel_0522 spore germination protein; TIGRFAM: spore germination protein; PFAM: Spore germination protein YP_005688067.1 manually curated; KEGG: sth:STH2455 hypothetical protein YP_005688068.1 KEGG: cce:Ccel_1969 germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein YP_005688069.1 KEGG: cce:Ccel_0522 spore germination protein; TIGRFAM: spore germination protein; PFAM: Spore germination protein YP_005688070.1 PFAM: GerA spore germination protein; KEGG: cce:Ccel_0521 GerA spore germination protein YP_005688071.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: cpy:Cphy_3821 band 7 protein; SMART: band 7 protein YP_005688072.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: cpy:Cphy_3822 HflK protein; SMART: band 7 protein YP_005688073.1 PFAM: 3D domain-containing protein; KEGG: cce:Ccel_0518 3D domain protein YP_005688074.1 KEGG: nth:Nther_0814 hypothetical protein YP_005688075.1 KEGG: scl:sce4015 hypothetical protein; PFAM: Ricin B lectin; glycoside hydrolase family 43; Dockerin type 1; SMART: Ricin B lectin YP_005688076.1 PFAM: glycoside hydrolase family 81; Dockerin type 1; KEGG: hau:Haur_1428 ricin B lectin YP_005688077.1 KEGG: amt:Amet_4593 hypothetical protein YP_005688078.1 KEGG: dal:Dalk_2729 hypothetical protein YP_005688079.1 KEGG: cce:Ccel_1397 hypothetical protein YP_005688080.1 KEGG: cce:Ccel_1875 hypothetical protein YP_005688081.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: cce:Ccel_2409 type IV pilus assembly protein PilM YP_005688082.1 KEGG: cce:Ccel_1876 cysteine desulfurase family protein; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V YP_005688083.1 KEGG: amt:Amet_4105 thiamine biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_005688084.1 KEGG: tpd:Teth39_0873 hypothetical protein YP_005688085.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: bmj:BMULJ_03723 hypothetical protein YP_005688086.1 KEGG: pcb:PC000305.00.0 hypothetical protein YP_005688087.1 KEGG: ptm:GSPATT00033380001 hypothetical protein YP_005688088.1 manually curated; KEGG: bha:BH3686 hypothetical protein YP_005688089.1 KEGG: glo:Glov_2573 ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_005688090.1 KEGG: eel:EUBELI_20357 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_005688091.1 KEGG: amt:Amet_1388 anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein YP_005688092.1 manually curated; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; KEGG: ate:Athe_0548 anaerobic ribonucleoside triphosphate reductase; PFAM: ATP-cone domain protein YP_005688093.1 PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: sat:SYN_02703 5-methyltetrahydrofolate--homocysteine methyltransferase YP_005688094.1 KEGG: sat:SYN_00095 putative cytoplasmic protein; manually curated; PFAM: Vitamin B12 dependent methionine synthase activation region YP_005688095.1 KEGG: tjr:TherJR_2224 uncharacterized membrane protein YP_005688096.1 KEGG: cbl:CLK_0225 hypothetical protein YP_005688097.1 PFAM: Coat F domain protein; KEGG: swo:Swol_1896 hypothetical protein YP_005688098.1 manually curated; KEGG: tet:TTHERM_00011270 hypothetical protein YP_005688099.1 KEGG: dma:DMR_27390 hypothetical protein; manually curated; PFAM: Dockerin type 1 YP_005688100.1 PFAM: glycoside hydrolase family 13 domain protein; KEGG: cbt:CLH_0520 hypothetical protein YP_005688101.1 KEGG: cac:CA_C0039 DNA segregation ATP-ase FtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; Forkhead-associated protein; SMART: Forkhead-associated protein; AAA ATPase YP_005688102.1 KEGG: bsu:BSU31910 hypothetical protein YP_005688103.1 KEGG: cac:CA_C0409 hypothetical protein YP_005688104.1 KEGG: bsu:BSU15760 phosphorylated protein phosphatase; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein YP_005688105.1 KEGG: cac:CA_C3039 hypothetical protein; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain YP_005688106.1 KEGG: ddc:Dd586_1282 hypothetical protein YP_005688107.1 KEGG: esi:Exig_1766 glycosyl transferase family protein YP_005688108.1 KEGG: kol:Kole_1147 hypothetical protein YP_005688109.1 KEGG: apa:APP7_0591 tight adherence protein C YP_005688110.1 KEGG: atc:AGR_L_552 probable ABC transporter ATP-binding protein Y4GM YP_005688111.1 PFAM: type II secretion system protein E; KEGG: chl:Chy400_0548 type II secretion system protein E YP_005688112.1 KEGG: aau:AAur_3162 putative cell surface polysaccharide biosynthesis YP_005688113.1 KEGG: csc:Csac_2625 SAF domain-containing protein YP_005688114.1 KEGG: hps:HPSH_01720 cell division inhibitor (MinD) YP_005688115.1 PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; Dockerin type 1; KEGG: ate:Athe_1867 glycoside hydrolase family 48 YP_005688116.1 KEGG: cce:Ccel_0429 PKD domain containing protein; PFAM: glycoside hydrolase family 9; Dockerin type 1; PKD domain containing protein; SMART: PKD domain containing protein YP_005688117.1 TIGRFAM: sporulation protein, yteA family; KEGG: cce:Ccel_1852 transcriptional regulator, TraR/DksA family YP_005688118.1 KEGG: csc:Csac_1924 methylthioadenosine phosphorylase; TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine or other phosphorylase family 1 YP_005688119.1 TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; KEGG: gsu:GSU3379 aIF-2BI family translation initiation factor; PFAM: initiation factor 2B related YP_005688120.1 KEGG: ckr:CKR_0985 hypothetical protein; PFAM: iron dependent repressor; SMART: iron dependent repressor YP_005688121.1 PFAM: FeoA family protein; KEGG: cbe:Cbei_4197 FeoA family protein YP_005688122.1 KEGG: ckr:CKR_1488 hypothetical protein; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain-containing protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain-containing protein YP_005688123.1 KEGG: cdl:CDR20291_1329 hypothetical protein YP_005688124.1 KEGG: cce:Ccel_1936 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_005688125.1 PFAM: amino acid-binding ACT domain protein; KEGG: csc:Csac_2050 amino acid-binding ACT domain-containing protein YP_005688126.1 KEGG: cce:Ccel_1218 phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase and ligase YP_005688127.1 KEGG: cce:Ccel_0668 indolepyruvate oxidoreductase subunit beta; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, beta subunit; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain YP_005688128.1 KEGG: cce:Ccel_0667 indolepyruvate ferredoxin oxidoreductase, alpha subunit; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein YP_005688129.1 KEGG: tjr:TherJR_2929 SSS sodium solute transporter superfamily; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_005688130.1 PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: cce:Ccel_1759 RNA-metabolising metallo-beta-lactamase YP_005688131.1 KEGG: cac:CA_C3031 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II YP_005688132.1 PFAM: peptidase M42 family protein; KEGG: cce:Ccel_1760 peptidase M42 family protein YP_005688133.1 KEGG: cce:Ccel_1761 peptidase M42 family protein; PFAM: peptidase M42 family protein YP_005688134.1 PFAM: peptidase M42 family protein; KEGG: cce:Ccel_1762 peptidase M42 family protein YP_005688135.1 KEGG: cce:Ccel_1955 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein YP_005688136.1 KEGG: tex:Teth514_2151 NLP/P60 protein; PFAM: NLP/P60 protein; SH3 type 3 domain protein; SMART: SH3 domain protein; SH3 domain-containing protein YP_005688137.1 KEGG: ame:725439 similar to CG31974-PA YP_005688138.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cce:Ccel_1957 GCN5-related N-acetyltransferase YP_005688139.1 KEGG: ckr:CKR_1649 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC YP_005688140.1 KEGG: pth:PTH_0643 thiamine monophosphate synthase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_005688141.1 KEGG: pth:PTH_0642 thiamine biosynthesis protein ThiF; TIGRFAM: thiamine biosynthesis protein ThiF; PFAM: UBA/THIF-type NAD/FAD binding protein YP_005688142.1 KEGG: dae:Dtox_1681 thiazole biosynthesis protein ThiH; TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein YP_005688143.1 PFAM: thiazole biosynthesis family protein; KEGG: pth:PTH_0640 hypothetical protein YP_005688144.1 KEGG: pth:PTH_0639 sulfur transfer protein; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein YP_005688145.1 KEGG: cce:Ccel_0898 ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related YP_005688146.1 KEGG: cdl:CDR20291_1894 hypothetical protein YP_005688148.1 KEGG: zmn:Za10_0245 heat shock protein DnaJ domain protein YP_005688149.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: tjr:TherJR_0975 copper amine oxidase domain protein YP_005688150.1 PFAM: Methyltransferase type 11; KEGG: dth:DICTH_0193 methyltransferase, putative YP_005688151.1 manually curated; KEGG: geo:Geob_0720 recombinase YP_005688152.1 manually curated; PFAM: Resolvase domain; Recombinase; KEGG: geo:Geob_0720 recombinase; SMART: Resolvase domain YP_005688153.1 manually curated; KEGG: cyb:CYB_2324 hypothetical protein YP_005688154.1 manually curated; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG: nth:Nther_1523 DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_005688155.1 manually curated; KEGG: nth:Nther_1525 hypothetical protein YP_005688156.1 KEGG: glo:Glov_2327 resolvase domain; PFAM: Resolvase domain; SMART: Resolvase domain YP_005688157.1 KEGG: pno:SNOG_14271 hypothetical protein YP_005688158.1 KEGG: tjr:TherJR_0147 DNA binding domain protein, excisionase family; manually curated; TIGRFAM: DNA binding domain protein, excisionase family YP_005688159.1 KEGG: cce:Ccel_1666 transposase IS3/IS911 family protein; manually curated; PFAM: transposase IS3/IS911 family protein YP_005688160.1 manually curated; KEGG: dal:Dalk_4181 hypothetical protein YP_005688161.1 PFAM: protein of unknown function DUF503; KEGG: amt:Amet_3629 hypothetical protein YP_005688162.1 KEGG: psb:Psyr_1912 response regulator receiver:stage II sporulation E; PFAM: Stage II sporulation protein E; response regulator receiver; SMART: response regulator receiver; protein phosphatase 2C domain protein YP_005688163.1 SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; manually curated; KEGG: dal:Dalk_2282 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein YP_005688164.1 KEGG: cce:Ccel_1964 fibronectin-binding A domain protein; manually curated; PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814 YP_005688165.1 PFAM: aminotransferase class I and II; KEGG: cno:NT01CX_0284 aspartate aminotransferase YP_005688166.1 KEGG: cdl:CDR20291_0767 putative reductase; manually curated; PFAM: nitroreductase YP_005688167.1 KEGG: ate:Athe_1867 glycoside hydrolase family 48; manually curated; PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; Dockerin type 1 YP_005688168.1 KEGG: cce:Ccel_1538 thiamine pyrophosphokinase; TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic domain-containing protein YP_005688169.1 TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: amt:Amet_2777 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase YP_005688170.1 KEGG: cce:Ccel_1536 ribosome small subunit-dependent GTPase A; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC YP_005688171.1 KEGG: cce:Ccel_1535 serine/threonine protein kinase with PASTA sensor(s); PFAM: Serine/threonine-protein kinase-like domain; PASTA domain containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; PASTA domain containing protein YP_005688172.1 KEGG: cce:Ccel_1534 protein serine/threonine phosphatase; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein YP_005688173.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: cce:Ccel_1533 ribosomal RNA large subunit methyltransferase N; SMART: Elongator protein 3/MiaB/NifB YP_005688174.1 KEGG: cce:Ccel_1532 sun protein; TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44 YP_005688175.1 PFAM: peptidase membrane zinc metallopeptidase; KEGG: cbe:Cbei_3038 peptidase, membrane zinc metallopeptidase, putative YP_005688176.1 PFAM: protein of unknown function DUF116; KEGG: cce:Ccel_1530 protein of unknown function DUF116 YP_005688177.1 KEGG: cce:Ccel_1529 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein YP_005688178.1 KEGG: tpd:Teth39_1320 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_005688179.1 TIGRFAM: primosomal protein N'; PFAM: type III restriction protein res subunit; helicase domain protein; KEGG: cce:Ccel_1527 primosomal protein N'; SMART: DEAD-like helicase ; helicase domain protein YP_005688180.1 KEGG: cno:NT01CX_1363 hypothetical protein YP_005688181.1 PFAM: Polyprenyl synthetase; KEGG: cce:Ccel_1526 polyprenyl synthetase YP_005688182.1 PFAM: Heptaprenyl diphosphate synthase component I; KEGG: cce:Ccel_1525 heptaprenyl diphosphate synthase component I YP_005688183.1 PFAM: protein of unknown function DUF1312; KEGG: clj:CLJU_c11430 hypothetical protein YP_005688184.1 PFAM: ApbE family lipoprotein; KEGG: dhd:Dhaf_1499 ApbE family lipoprotein YP_005688185.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; TQO small subunit DoxD domain-containing protein; KEGG: tte:TTE2486 NADH dehydrogenase, FAD-containing subunit YP_005688186.1 PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cce:Ccel_1522 single-stranded DNA-binding protein YP_005688187.1 PFAM: Mur ligase middle domain protein; KEGG: aoe:Clos_2017 UDP-N-acetylmuramyl-tripeptide synthetase YP_005688188.1 PFAM: polysaccharide deacetylase; KEGG: cce:Ccel_0567 polysaccharide deacetylase YP_005688189.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); KEGG: hmo:HM1_0486 asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_005688190.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ate:Athe_0639 PpiC-type peptidyl-prolyl cis-trans isomerase YP_005688191.1 TIGRFAM: phosphoribosylformylglycinamidine synthase; KEGG: tjr:TherJR_0822 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_005688192.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cce:Ccel_0498 transcriptional regulator, LysR family YP_005688193.1 KEGG: tjr:TherJR_1682 transcriptional regulator, XRE family; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_005688194.1 PFAM: AMP-dependent synthetase and ligase; KEGG: tjr:TherJR_1681 AMP-dependent synthetase and ligase YP_005688195.1 PFAM: Heat shock protein Hsp90-like; ATP-binding region ATPase domain protein; KEGG: cce:Ccel_0492 heat shock protein 90 YP_005688196.1 PFAM: ABC-3 protein; KEGG: dhd:Dhaf_0044 ABC-3 protein YP_005688197.1 KEGG: bpf:BpOF4_13815 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_005688198.1 PFAM: periplasmic solute binding protein; KEGG: dhd:Dhaf_0042 periplasmic solute binding protein YP_005688199.1 PFAM: ferric-uptake regulator; KEGG: fma:FMG_0579 FUR family transcriptional regulator YP_005688200.1 PFAM: peptidase A24A prepilin type IV; KEGG: tjr:TherJR_2433 peptidase A24A prepilin type IV YP_005688201.1 KEGG: cac:CA_C0407 PP2C phosphatase family protein; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein YP_005688202.1 PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; Dockerin type 1; KEGG: ate:Athe_1867 glycoside hydrolase family 48 YP_005688203.1 PFAM: protein of unknown function DUF45; KEGG: cce:Ccel_2307 protein of unknown function DUF45 YP_005688204.1 PFAM: peptidase M24; creatinase; KEGG: mba:Mbar_A0649 Xaa-Pro aminopeptidase YP_005688205.1 PFAM: protein of unknown function DUF214; KEGG: cpy:Cphy_2079 hypothetical protein YP_005688206.1 KEGG: cpy:Cphy_2078 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_005688207.1 KEGG: cpy:Cphy_2077 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_005688208.1 KEGG: cpy:Cphy_2076 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_005688209.1 PFAM: glycoside hydrolase family 5; Dockerin type 1; KEGG: cce:Ccel_2337 glycoside hydrolase family 5 YP_005688210.1 KEGG: amt:Amet_1038 hypothetical protein YP_005688211.1 TIGRFAM: ABC-type bacteriocin transporter; PFAM: ABC transporter transmembrane region; peptidase C39 bacteriocin processing; ABC transporter related; KEGG: amt:Amet_1032 ABC-type bacteriocin transporter; SMART: AAA ATPase YP_005688212.1 KEGG: amt:Amet_1039 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; Tetratricopeptide TPR_1 repeat-containing protein; SMART: Elongator protein 3/MiaB/NifB; Tetratricopeptide repeat YP_005688213.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tme:Tmel_0900 HAD family hydrolase YP_005688214.1 manually curated; KEGG: pyo:PY04630 235 kDa rhoptry protein YP_005688215.1 KEGG: dgr:Dgri_GH24579 GH24579 gene product from transcript GH24579-RA YP_005688216.1 manually curated; PFAM: Peptidoglycan-binding lysin domain; KEGG: aoe:Clos_1944 peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM YP_005688217.1 KEGG: bcu:BCAH820_5559 hypothetical protein YP_005688218.1 PFAM: transposase IS200-family protein; KEGG: dhd:Dhaf_3832 transposase IS200-family protein YP_005688219.1 KEGG: cbe:Cbei_3405 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_005688220.1 TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; KEGG: tte:TTE0252 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit YP_005688221.1 KEGG: lcz:LCAZH_1857 hypothetical protein; manually curated; PFAM: sodium pump decarboxylase gamma subunit YP_005688222.1 KEGG: aac:Aaci_0018 nuclease (SNase domain protein) YP_005688223.1 manually curated; PFAM: Exonuclease RNase T and DNA polymerase III; KEGG: pjd:Pjdr2_0758 exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_005688224.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: pyruvate formate-lyase activating enzyme; KEGG: cce:Ccel_2581 pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein YP_005688225.1 TIGRFAM: formate acetyltransferase; KEGG: cce:Ccel_2582 formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical YP_005688226.1 KEGG: slp:Slip_0641 capsule synthesis protein, CapA; PFAM: Capsule synthesis protein, CapA; SMART: Capsule synthesis protein, CapA YP_005688227.1 KEGG: ate:Athe_1647 2'-5' RNA ligase; TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX YP_005688228.1 KEGG: cce:Ccel_0501 hypothetical protein YP_005688229.1 PFAM: aminodeoxychorismate lyase; KEGG: cce:Ccel_2018 hypothetical protein YP_005688230.1 KEGG: cce:Ccel_2019 hypothetical protein YP_005688231.1 KEGG: cce:Ccel_2020 hypothetical protein YP_005688232.1 PFAM: protein of unknown function DUF342; KEGG: cce:Ccel_2021 protein of unknown function DUF342 YP_005688233.1 KEGG: cce:Ccel_2022 RNA polymerase, sigma 28 subunit, FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein YP_005688234.1 KEGG: cce:Ccel_2023 hypothetical protein YP_005688235.1 PFAM: CheD family protein; KEGG: cce:Ccel_2024 CheD YP_005688236.1 KEGG: cce:Ccel_2025 CheC, inhibitor of MCP methylation; manually curated; PFAM: CheC domain protein YP_005688237.1 KEGG: cce:Ccel_2026 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_005688238.1 KEGG: cce:Ccel_2027 CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; P2 response regulator binding domain protein; Signal transducing histidine kinase homodimeric; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein YP_005688239.1 KEGG: cce:Ccel_2028 response regulator receiver modulated CheB methylesterase; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver YP_005688240.1 PFAM: type IV pilus assembly PilZ; KEGG: tpd:Teth39_1234 type IV pilus assembly PilZ YP_005688241.1 KEGG: cce:Ccel_2029 cobyrinic acid ac-diamide synthase YP_005688242.1 TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; KEGG: cce:Ccel_2030 GTP-binding signal recognition particle SRP54 G-domain protein; SMART: AAA ATPase YP_005688243.1 manually curated; TIGRFAM: flagellar biosynthesis protein FlhA; KEGG: cce:Ccel_2031 flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein YP_005688244.1 KEGG: cce:Ccel_2032 flagellar biosynthetic protein FlhB; TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter YP_005688245.1 KEGG: cce:Ccel_2033 flagellar biosynthesis protein FliR; TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein YP_005688246.1 KEGG: cce:Ccel_2034 flagellar biosynthetic protein FliQ; TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3 YP_005688247.1 KEGG: cce:Ccel_2035 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein YP_005688248.1 KEGG: cce:Ccel_2036 hypothetical protein YP_005688249.1 KEGG: ate:Athe_2159 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_005688250.1 KEGG: cce:Ccel_2038 flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein YP_005688251.1 KEGG: cce:Ccel_2039 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein YP_005688252.1 PFAM: flagellar basal body-associated protein FliL; KEGG: cce:Ccel_2040 flagellar basal body-associated protein FliL YP_005688253.1 PFAM: flagellar FlbD family protein; KEGG: tte:TTE1432 hypothetical protein YP_005688254.1 KEGG: cce:Ccel_2042 protein of unknown function DUF1078 domain protein; TIGRFAM: flagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; flagellar basal body rod protein YP_005688255.1 TIGRFAM: flagellar operon protein; KEGG: cce:Ccel_2043 flagellar operon protein YP_005688256.1 PFAM: flagellar hook capping protein; KEGG: cce:Ccel_2044 flagellar hook capping protein YP_005688257.1 PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: cce:Ccel_2045 flagellar hook-length control protein YP_005688258.1 KEGG: cce:Ccel_2046 hypothetical protein YP_005688259.1 KEGG: cce:Ccel_2047 flagellar export protein FliJ; TIGRFAM: flagellar export protein FliJ; PFAM: flagellar export FliJ family protein YP_005688260.1 TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: cce:Ccel_2048 ATPase FliI/YscN; SMART: AAA ATPase YP_005688261.1 PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: cce:Ccel_2049 flagellar assembly protein FliH YP_005688262.1 KEGG: cce:Ccel_2050 flagellar motor switch protein G; TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; MgtE intracellular region YP_005688263.1 KEGG: cce:Ccel_2051 flagellar M-ring protein FliF; TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein YP_005688264.1 KEGG: cce:Ccel_2052 flagellar hook-basal body complex subunit FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE YP_005688265.1 KEGG: cce:Ccel_2053 flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein YP_005688266.1 KEGG: cce:Ccel_2054 flagellar basal-body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein YP_005688267.1 TIGRFAM: gid protein; KEGG: cce:Ccel_2055 tRNA (uracil-5-)-methyltransferase Gid; PFAM: glucose-inhibited division protein A YP_005688268.1 SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; TIGRFAM: DNA topoisomerase I; KEGG: cce:Ccel_2056 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; DNA topoisomerase type IA zn finger domain protein YP_005688269.1 KEGG: tpd:Teth39_1265 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein YP_005688270.1 TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: aoe:Clos_2318 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_005688271.1 PFAM: protein of unknown function DUF307; KEGG: dhd:Dhaf_2585 hypothetical protein YP_005688272.1 PFAM: protein of unknown function UPF0047; KEGG: cce:Ccel_0515 protein of unknown function UPF0047 YP_005688273.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: cce:Ccel_2058 Mg chelatase, subunit ChlI; SMART: AAA ATPase YP_005688274.1 KEGG: cno:NT01CX_0994 hypothetical protein YP_005688275.1 KEGG: cce:Ccel_2895 hypothetical protein YP_005688276.1 PFAM: cellulosome anchoring protein cohesin region; copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_0733 cellulosome anchoring protein cohesin region YP_005688277.1 PFAM: protein of unknown function DUF115; KEGG: aoe:Clos_2517 hypothetical protein YP_005688278.1 PFAM: ATP-cone domain protein; KEGG: cce:Ccel_2059 transcriptional regulator NrdR YP_005688279.1 KEGG: cce:Ccel_2060 sporulation protein, YlmC/YmxH family; TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain protein YP_005688280.1 KEGG: cce:Ccel_2061 sporulation sigma factor SigG; TIGRFAM: RNA polymerase sigma-G factor; RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein YP_005688281.1 KEGG: cce:Ccel_2062 sporulation sigma factor SigE; TIGRFAM: RNA polymerase sigma-E factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein YP_005688282.1 KEGG: cce:Ccel_2063 sigma-E processing peptidase SpoIIGA; TIGRFAM: sigma-E processing peptidase SpoIIGA; PFAM: peptidase U4 sporulation factor SpoIIGA YP_005688283.1 KEGG: cce:Ccel_2064 cell division protein FtsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain YP_005688284.1 KEGG: cce:Ccel_2065 cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA YP_005688285.1 PFAM: protein of unknown function DUF1290; KEGG: cce:Ccel_2066 protein of unknown function DUF1290 YP_005688286.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: cce:Ccel_2067 polypeptide-transport-associated domain protein FtsQ-type YP_005688287.1 PFAM: domain of unknown function DUF1727; Mur ligase middle domain protein; KEGG: cce:Ccel_2069 domain of unknown function DUF1727 YP_005688288.1 PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: cce:Ccel_2070 CobB/CobQ domain protein glutamine amidotransferase YP_005688289.1 PFAM: transposase mutator type; KEGG: bts:Btus_2829 transposase mutator type YP_005688290.1 PFAM: Dockerin type 1; KEGG: cce:Ccel_2162 lipolytic protein G-D-S-L family YP_005688291.1 KEGG: sea:SeAg_B3342 hypothetical protein YP_005688292.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: ter:Tery_3996 tetratricopeptide TPR_2 YP_005688293.1 KEGG: cce:Ccel_2442 cellulosome protein dockerin type I; manually curated; PFAM: Dockerin type 1 YP_005688294.1 KEGG: amt:Amet_3105 ATPase YP_005688295.1 PFAM: glycoside hydrolase family 9; Dockerin type 1; KEGG: cce:Ccel_0753 glycoside hydrolase family 9 YP_005688296.1 KEGG: mcc:697382 nebulin-related anchoring protein YP_005688297.1 KEGG: emi:Emin_0753 hypothetical protein YP_005688298.1 KEGG: cpy:Cphy_0087 hydrogenase, Fe-only; TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; iron hydrogenase small subunit YP_005688299.1 KEGG: cbk:CLL_A2308 putative iron hydrogenase, electron-transfer subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_005688300.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: cpy:Cphy_0089 NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_005688301.1 KEGG: emi:Emin_0751 protein serine/threonine phosphatase; PFAM: Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein YP_005688302.1 KEGG: emi:Emin_0752 putative PAS/PAC sensor protein; PFAM: Fe-S cluster domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_005688303.1 KEGG: emi:Emin_0753 hypothetical protein YP_005688304.1 PFAM: aminoglycoside phosphotransferase; KEGG: emi:Emin_0754 aminoglycoside phosphotransferase YP_005688305.1 PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: emi:Emin_0755 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_005688306.1 KEGG: emi:Emin_0756 redox-sensing transcriptional repressor REX; PFAM: CoA-binding domain protein; Rex DNA-binding domain protein; SMART: CoA-binding domain protein YP_005688307.1 KEGG: cce:Ccel_1704 dipicolinate synthase subunit B; TIGRFAM: dipicolinic acid synthetase, B subunit; PFAM: flavoprotein YP_005688308.1 KEGG: cce:Ccel_1705 dipicolinate synthase subunit A YP_005688309.1 PFAM: peptidase M16 domain protein; KEGG: cce:Ccel_1706 peptidase M16 domain protein YP_005688310.1 SMART: KH domain protein; TIGRFAM: polyribonucleotide nucleotidyltransferase; KEGG: cce:Ccel_1707 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; Exoribonuclease, phosphorolytic domain 2; K Homology, type 1, subgroup; Polynucleotide phosphorylase, phosphorolytic RNA-binding YP_005688311.1 KEGG: tte:TTE1388 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15 YP_005688312.1 KEGG: cac:CA_C1336 hypothetical protein YP_005688313.1 KEGG: cac:CA_C1337 spore coat protein CotJB YP_005688314.1 PFAM: manganese containing catalase; KEGG: cac:CA_C1338 spore coat protein CotJC YP_005688315.1 PFAM: glycoside hydrolase family 9; Carbohydrate-binding CenC domain protein; type 3a cellulose-binding domain protein; Dockerin type 1; KEGG: cce:Ccel_0732 glycoside hydrolase family 9 YP_005688316.1 PFAM: glycoside hydrolase family 9; Carbohydrate-binding CenC domain protein; Dockerin type 1; KEGG: cce:Ccel_0732 glycoside hydrolase family 9 YP_005688317.1 KEGG: ddi:DDB_G0289603 hypothetical protein YP_005688318.1 PFAM: protein of unknown function DUF711; KEGG: cce:Ccel_1722 hypothetical protein YP_005688319.1 PFAM: amino acid-binding ACT domain protein; KEGG: cce:Ccel_1723 hypothetical protein YP_005688320.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; PAS fold domain protein; KEGG: tjr:TherJR_0997 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; PAS domain containing protein YP_005688321.1 KEGG: aoe:Clos_0640 radical SAM domain-containing protein YP_005688322.1 KEGG: hmo:HM1_0506 hypothetical protein YP_005688323.1 PFAM: glycoside hydrolase family 5; Dockerin type 1; KEGG: csc:Csac_1078 cellulose 1,4-beta-cellobiosidase YP_005688324.1 PFAM: type 3a cellulose-binding domain protein; KEGG: cpy:Cphy_3368 cellulose 1,4-beta-cellobiosidase YP_005688325.1 KEGG: cce:Ccel_1739 putative RNA polymerase sigma factor SigI; TIGRFAM: RNA polymerase sigma-I factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein YP_005688326.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: cpo:COPRO5265_0075 anion ABC transporter, anion-binding protein YP_005688327.1 KEGG: cce:Ccel_3226 methyl-accepting chemotaxis sensory transducer; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; SMART: histidine kinase HAMP region domain protein; chemotaxis sensory transducer YP_005688328.1 KEGG: bha:BH1806 hypothetical protein YP_005688329.1 PFAM: protein of unknown function DUF477; KEGG: str:Sterm_3173 protein of unknown function DUF477 YP_005688330.1 PFAM: protein of unknown function DUF74; KEGG: ckr:CKR_2147 hypothetical protein YP_005688331.1 KEGG: cpy:Cphy_2429 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase YP_005688332.1 KEGG: eel:EUBELI_01692 ATP-binding cassette subfamily C protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_005688333.1 PFAM: RbsD or FucU transport; KEGG: sub:SUB1310 D-ribose pyranase YP_005688334.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cdf:CD3105 alcohol dehydrogenase YP_005688335.1 KEGG: tit:Thit_1705 periplasmic binding protein/LacI transcriptional regulator YP_005688336.1 PFAM: inner-membrane translocator; KEGG: ate:Athe_2265 monosaccharide-transporting ATPase YP_005688337.1 KEGG: ate:Athe_2266 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_005688338.1 PFAM: ROK family protein; KEGG: bha:BH1094 transcriptional repressor of the xylose operon YP_005688339.1 PFAM: PfkB domain protein; KEGG: tmt:Tmath_1672 PfkB domain protein YP_005688340.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: ere:EUBREC_1410 hypothetical protein YP_005688341.1 KEGG: ehi:EHI_119550 CCR4/NOT transcription complex subunit 3 YP_005688342.1 KEGG: ret:RHE_CH00443 hypothetical protein YP_005688343.1 KEGG: dhd:Dhaf_3802 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_005688344.1 KEGG: swp:swp_0823 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_005688345.1 KEGG: pfh:PFHG_00634 conserved hypothetical protein YP_005688346.1 KEGG: noc:Noc_2864 phospho-N-acetylmuramoyl-pentapeptide-transferase YP_005688347.1 KEGG: cpy:Cphy_3187 hypothetical protein YP_005688348.1 KEGG: dsy:DSY1087 hypothetical protein; manually curated; PFAM: peptidase M56 BlaR1 YP_005688349.1 KEGG: dsy:DSY1088 hypothetical protein; manually curated; PFAM: Penicillinase repressor YP_005688350.1 manually curated; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; KEGG: cce:Ccel_2202 GMP synthase; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I YP_005688351.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: cce:Ccel_2430 glutamate dehydrogenase YP_005688352.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: cce:Ccel_2546 ferredoxin-NADP(+) reductase subunit alpha YP_005688353.1 KEGG: cce:Ccel_2545 glutamate synthase (NADPH), homotetrameric; TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_005688354.1 PFAM: transposase mutator type; KEGG: tpd:Teth39_2032 transposase, mutator type YP_005688355.1 TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; KEGG: cce:Ccel_2203 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB YP_005688356.1 PFAM: protein of unknown function DUF111; KEGG: cce:Ccel_2204 protein of unknown function DUF111 YP_005688357.1 PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: cce:Ccel_2205 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_005688358.1 PFAM: Domain of unknown function DUF2520; Putative oxidoreductase/dehydrogenase, Rossmann-like domain; KEGG: chy:CHY_2378 hypothetical protein YP_005688359.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: pfh:PFHG_04450 conserved hypothetical protein YP_005688361.1 KEGG: tex:Teth514_0702 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_005688362.1 PFAM: aminotransferase class I and II; KEGG: cbt:CLH_2728 aspartate aminotransferase YP_005688363.1 KEGG: cno:NT01CX_1456 AsnC/Lrp family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type YP_005688365.1 KEGG: cce:Ccel_2210 hypothetical protein YP_005688366.1 KEGG: cce:Ccel_2211 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein YP_005688367.1 PFAM: transposase mutator type; KEGG: bts:Btus_2829 transposase mutator type YP_005688368.1 KEGG: cce:Ccel_1666 transposase IS3/IS911 family protein; manually curated; PFAM: transposase IS3/IS911 family protein YP_005688369.1 KEGG: cbh:CLC_2751 hypothetical protein YP_005688370.1 TIGRFAM: alpha-glucan phosphorylase; KEGG: cce:Ccel_2215 alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_005688371.1 KEGG: ate:Athe_2013 transposase mutator type; manually curated; PFAM: transposase mutator type YP_005688372.1 KEGG: tjr:TherJR_1670 hypothetical protein YP_005688373.1 manually curated; TIGRFAM: CoA-substrate-specific enzyme activase; KEGG: cce:Ccel_2218 CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type YP_005688374.1 manually curated; KEGG: cce:Ccel_2219 hypothetical protein YP_005688375.1 PFAM: Protein of unknown function DUF2229, CoA enzyme activase; KEGG: aoe:Clos_2152 hypothetical protein YP_005688376.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cce:Ccel_1637 hypothetical protein YP_005688377.1 manually curated; TIGRFAM: signal peptidase I; KEGG: eel:EUBELI_01322 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region YP_005688378.1 PFAM: ketose-bisphosphate aldolase class-II; manually curated; KEGG: cce:Ccel_2222 fructose-1,6-bisphosphate aldolase, class II; TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase YP_005688379.1 PFAM: phosphofructokinase; KEGG: cce:Ccel_2223 6-phosphofructokinase YP_005688380.1 KEGG: eel:EUBELI_20586 hypothetical protein YP_005688381.1 KEGG: cce:Ccel_0137 L-lactate dehydrogenase; TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase YP_005688382.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: cce:Ccel_0138 malic protein NAD-binding YP_005688383.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: cce:Ccel_2225 flavin reductase domain protein FMN-binding YP_005688384.1 KEGG: cce:Ccel_2232 hydrogenase, Fe-only; TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; iron hydrogenase small subunit YP_005688385.1 KEGG: cce:Ccel_2233 respiratory-chain NADH dehydrogenase domain 51 kDa subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Sucraseferredoxin family protein; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_005688386.1 KEGG: cce:Ccel_2234 ferredoxin YP_005688387.1 KEGG: cce:Ccel_2235 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_005688388.1 KEGG: cce:Ccel_2236 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_005688389.1 KEGG: cpo:COPRO5265_0176 PHP domain, putative; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein YP_005688390.1 PFAM: DRTGG domain protein; KEGG: tex:Teth514_2144 hypothetical protein YP_005688391.1 PFAM: Fe-S cluster domain protein; hydrogenase large subunit domain protein; KEGG: tmt:Tmath_0862 Fe-S cluster domain protein YP_005688392.1 KEGG: cpy:Cphy_3799 putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_005688393.1 KEGG: tex:Teth514_2147 hypothetical protein YP_005688394.1 KEGG: cce:Ccel_1435 AAA ATPase; PFAM: TGS domain-containing protein; SMART: AAA ATPase YP_005688395.1 KEGG: oih:OB0441 hypothetical protein YP_005688396.1 PFAM: Domain of unknown function DUF1848; KEGG: cbb:CLD_2592 hypothetical protein YP_005688397.1 KEGG: cin:445679 nuclear lamin YP_005688398.1 KEGG: cce:Ccel_1434 peptide chain release factor 3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein YP_005688399.1 KEGG: gym:GYMC10_4794 legume lectin beta domain protein; TIGRFAM: conserved repeat domain protein; PFAM: S-layer domain-containing protein YP_005688400.1 PFAM: transposase IS200-family protein; KEGG: dhd:Dhaf_3832 transposase IS200-family protein YP_005688401.1 KEGG: cbr:CBG08354 Hypothetical protein CBG08354 YP_005688402.1 manually curated; KEGG: hhe:HH1354 hypothetical protein YP_005688403.1 TIGRFAM: NAD+ synthetase; KEGG: cce:Ccel_1200 NAD synthetase YP_005688404.1 KEGG: cce:Ccel_1199 valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase YP_005688405.1 KEGG: cce:Ccel_1198 hypothetical protein YP_005688406.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: amt:Amet_1301 glycoside hydrolase family 3 protein YP_005688407.1 KEGG: aae:aq_854 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat YP_005688408.1 manually curated; KEGG: amt:Amet_0486 hypothetical protein YP_005688409.1 PFAM: class II aldolase/adducin family protein; KEGG: cpy:Cphy_1177 class II aldolase/adducin family protein YP_005688410.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; KEGG: cce:Ccel_1784 ErfK/YbiS/YcfS/YnhG family protein YP_005688411.1 KEGG: mjl:Mjls_3056 hypothetical protein YP_005688412.1 SMART: PA14 domain protein; KEGG: npu:Npun_F3469 PA14 domain-containing protein YP_005688413.1 KEGG: cce:Ccel_1739 putative RNA polymerase sigma factor SigI; TIGRFAM: RNA polymerase sigma-I factor; PFAM: sigma-70 region 2 domain protein YP_005688414.1 KEGG: ate:Athe_0423 glycosyltransferase 28-like protein; manually curated; PFAM: Glycosyltransferase 28 domain YP_005688415.1 manually curated; KEGG: aoe:Clos_1172 hypothetical protein YP_005688416.1 KEGG: cce:Ccel_2116 ATPase AAA-2 domain protein; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp ATPase-like; SMART: AAA ATPase YP_005688417.1 PFAM: transposase IS4 family protein; KEGG: llo:LLO_1884 transposase (DDE domain) YP_005688418.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: cce:Ccel_2119 excinuclease ABC, A subunit; SMART: AAA ATPase YP_005688419.1 PFAM: 3D domain-containing protein; KEGG: aoe:Clos_2659 3D domain-containing protein YP_005688420.1 TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; KEGG: cce:Ccel_1413 excinuclease ABC subunit B; SMART: DEAD-like helicase ; helicase domain protein YP_005688421.1 KEGG: ate:Athe_0160 hypothetical protein YP_005688422.1 PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; KEGG: cce:Ccel_1399 DNA gyrase/topoisomerase IV subunit A; SMART: DNA gyrase/topoisomerase IV subunit A YP_005688423.1 KEGG: cce:Ccel_1398 DNA gyrase subunit B domain protein; PFAM: DNA gyrase subunit B domain protein; TOPRIM domain-containing protein; DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II YP_005688424.1 KEGG: pfh:PFHG_02988 conserved hypothetical protein YP_005688425.1 KEGG: ppp:PHYPADRAFT_122756 hypothetical protein YP_005688426.1 KEGG: cbi:CLJ_B0534 hypothetical protein YP_005688427.1 PFAM: protein of unknown function DUF1212; KEGG: cce:Ccel_1520 protein of unknown function DUF1212 YP_005688428.1 TIGRFAM: spore coat assembly protein SafA; PFAM: SCP-like extracellular; Peptidoglycan-binding lysin domain; KEGG: csc:Csac_1150 allergen V5/TPX-1 family protein; SMART: Peptidoglycan-binding LysM YP_005688429.1 KEGG: gwc:GWCH70_0691 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_005688430.1 KEGG: dae:Dtox_0613 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_005688431.1 KEGG: cce:Ccel_2936 hypothetical protein YP_005688432.1 KEGG: mba:Mbar_A1294 phosphoserine aminotransferase; TIGRFAM: phosphoserine aminotransferase YP_005688433.1 KEGG: mmx:MmarC6_0807 hypothetical protein YP_005688434.1 PFAM: Integrase catalytic region; transposase IS3/IS911 family protein; KEGG: cce:Ccel_2178 transposase IS3/IS911 family protein YP_005688435.1 KEGG: cai:Caci_3891 hypothetical protein YP_005688436.1 manually curated; KEGG: clj:CLJU_c18640 hypothetical protein YP_005688437.1 KEGG: amt:Amet_0566 homoserine dehydrogenase; manually curated; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; amino acid-binding ACT domain protein YP_005688438.1 SMART: helicase c2; KEGG: cce:Ccel_0660 DEAD_2 domain protein YP_005688439.1 SMART: MCP methyltransferase CheR-type; manually curated; KEGG: cvi:CV_1580 two-component hybrid sensor-regulator protein; PFAM: MCP methyltransferase CheR-type YP_005688440.1 manually curated; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: clj:CLJU_c19760 putative sensory transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein YP_005688442.1 KEGG: tit:Thit_0372 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase YP_005688443.1 KEGG: clj:CLJU_c26700 hypothetical protein; PFAM: protein of unknown function DUF815; AAA ATPase central domain protein; SMART: AAA ATPase YP_005688444.1 PFAM: aldo/keto reductase; KEGG: gtn:GTNG_1875 putative K+ channel, beta subunit YP_005688445.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; KEGG: cce:Ccel_1334 glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain-containing protein; glycosyl transferase group 1 YP_005688446.1 KEGG: clj:CLJU_c00560 putative spore coat protein F; manually curated; PFAM: Coat F domain protein YP_005688447.1 KEGG: aoe:Clos_1643 hypothetical protein YP_005688448.1 PFAM: pseudouridine synthase; KEGG: aoe:Clos_0690 pseudouridine synthase YP_005688449.1 KEGG: cce:Ccel_2432 hypothetical protein YP_005688451.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: saf:SULAZ_0219 glycerate dehydrogenase (NADH-dependent hydroxypyruvatereductase) (hpr) (gdh) (hydroxypyruvate dehydrogenase) (glyoxylatereductase) (hpr-a) YP_005688452.1 PFAM: glycosyltransferase 36; carbohydrate binding; glycosyltransferase 36 associated; KEGG: cce:Ccel_2109 glycosyltransferase 36 YP_005688453.1 PFAM: glycoside hydrolase family 9; Dockerin type 1; KEGG: cce:Ccel_0737 glycoside hydrolase family 9 YP_005688454.1 TIGRFAM: diguanylate cyclase; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; GGDEF domain containing protein; KEGG: dtu:Dtur_1753 diguanylate cyclase and metal dependent phosphohydrolase; SMART: GGDEF domain containing protein; metal-dependent phosphohydrolase HD region YP_005688455.1 KEGG: nth:Nther_1212 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein YP_005688456.1 PFAM: type 3a cellulose-binding domain protein; KEGG: ate:Athe_1860 glycoside hydrolase family 48 YP_005688457.1 KEGG: cbf:CLI_2882 glycosy hydrolase family protein; PFAM: glycoside hydrolase family 18; Dockerin type 1; SMART: chitinase II YP_005688458.1 PFAM: glycoside hydrolase family 8; Dockerin type 1; KEGG: cce:Ccel_0730 glycoside hydrolase family 8 YP_005688459.1 TIGRFAM: RNA polymerase sigma-I factor; KEGG: cce:Ccel_1739 putative RNA polymerase sigma factor SigI YP_005688460.1 PFAM: type 3a cellulose-binding domain protein; KEGG: cme:CMH001C similar to hedgehog protein YP_005688461.1 KEGG: cce:Ccel_2636 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_005688462.1 KEGG: cbf:CLI_2086 aminotransferase, class V; PFAM: aminotransferase class V YP_005688463.1 KEGG: cce:Ccel_2896 hypothetical protein YP_005688464.1 KEGG: cce:Ccel_2899 hypothetical protein YP_005688465.1 KEGG: pth:PTH_2594 gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase YP_005688466.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; KEGG: bfs:BF0931 putative haloacid dehalogenase-like hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase YP_005688467.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: pjd:Pjdr2_1276 copper amine oxidase domain protein YP_005688468.1 PFAM: Rhomboid family protein; KEGG: aoe:Clos_1948 rhomboid family protein YP_005688469.1 PFAM: Dockerin type 1; regulator of chromosome condensation RCC1; KEGG: mxa:MXAN_0889 RCC1 repeat-containing protein YP_005688470.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: ckr:CKR_1232 hypothetical protein; SMART: AAA ATPase YP_005688471.1 KEGG: scl:sce5204 phosphoserine phosphatase; PFAM: ATP-binding region ATPase domain protein; periplasmic binding protein/LacI transcriptional regulator; SMART: ATP-binding region ATPase domain protein YP_005688472.1 KEGG: mvu:Metvu_1335 hypothetical protein YP_005688473.1 PFAM: protein of unknown function DUF58; KEGG: mpd:MCP_1526 hypothetical protein YP_005688474.1 PFAM: ATPase associated with various cellular activities AAA_3; KEGG: mpd:MCP_1527 putative AAA ATPase YP_005688475.1 KEGG: mpd:MCP_1528 hypothetical protein YP_005688476.1 KEGG: afu:AF2400 hypothetical protein; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein YP_005688477.1 PFAM: protein of unknown function UPF0027; KEGG: aoe:Clos_1938 hypothetical protein YP_005688478.1 PFAM: peptidase C11 clostripain; KEGG: bld:BLi04029 hypothetical protein YP_005688479.1 PFAM: transposase IS4 family protein; KEGG: llo:LLO_1884 transposase (DDE domain) YP_005688480.1 KEGG: swo:Swol_2027 MutS-like mismatch repair protein, ATPase; PFAM: DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein YP_005688481.1 PFAM: Carbohydrate binding family 6; Dockerin type 1; KEGG: cce:Ccel_0739 cellulosome protein dockerin type I YP_005688482.1 KEGG: aoe:Clos_1085 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_005688483.1 KEGG: aoe:Clos_1087 heavy metal translocating P-type ATPase; TIGRFAM: cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase YP_005688484.1 PFAM: copper amine oxidase-like domain-containing protein; cell wall hydrolase SleB; KEGG: pjd:Pjdr2_1783 cell wall hydrolase SleB YP_005688485.1 KEGG: ckr:CKR_0931 hypothetical protein YP_005688486.1 KEGG: pjd:Pjdr2_6098 hypothetical protein YP_005688487.1 PFAM: VTC domain; KEGG: amt:Amet_1996 hypothetical protein YP_005688488.1 PFAM: Spore coat protein CotH; Dockerin type 1; KEGG: amt:Amet_0190 spore coat protein CotH YP_005688489.1 PFAM: aldo/keto reductase; KEGG: cce:Ccel_2503 aldo/keto reductase YP_005688490.1 KEGG: dth:DICTH_1736 hypothetical protein; TIGRFAM: glutaredoxin-like protein, YruB-family; PFAM: glutaredoxin YP_005688491.1 PFAM: AMP-dependent synthetase and ligase; Xylose isomerase domain-containing protein TIM barrel; KEGG: shi:Shel_17150 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II YP_005688492.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tte:TTE1540 acetyltransferase YP_005688493.1 KEGG: mpe:MYPE2130 cation-transporting P-type ATPase YP_005688494.1 KEGG: rci:RCIX1817 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_005688495.1 KEGG: nve:NEMVE_v1g69851 hypothetical protein YP_005688496.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: esi:Exig_2625 NAD-dependent epimerase/dehydratase YP_005688497.1 KEGG: btk:BT9727_3913 hypothetical protein YP_005688498.1 KEGG: ote:Oter_4297 hypothetical protein YP_005688499.1 KEGG: cpo:COPRO5265_0453 hypothetical protein YP_005688500.1 PFAM: UvrD/REP helicase; KEGG: bcx:BCA_A0188 DNA helicase YP_005688501.1 PFAM: SMC domain protein; KEGG: bcx:BCA_A0189 RecF/RecN/SMC N domain protein YP_005688502.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: tai:Taci_1642 ADP-ribosylation/crystallin J1 YP_005688503.1 KEGG: tpd:Teth39_2032 transposase, mutator type; manually curated; PFAM: transposase mutator type YP_005688504.1 manually curated; KEGG: mmh:Mmah_0570 uncharacterized membrane-associated protein/domain protein YP_005688505.1 KEGG: vpr:Vpar_1664 S-layer domain protein YP_005688507.1 KEGG: lba:Lebu_0500 5-nitroimidazole antibiotic resistance protein YP_005688508.1 manually curated; KEGG: zpr:ZPR_2454 secreted protein YP_005688509.1 PFAM: metallophosphoesterase; KEGG: cce:Ccel_1418 metallophosphoesterase YP_005688510.1 manually curated; KEGG: cce:Ccel_1445 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI) YP_005688511.1 PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cce:Ccel_1444 small acid-soluble spore protein alpha/beta type YP_005688512.1 KEGG: cno:NT01CX_1768 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit YP_005688513.1 KEGG: cno:NT01CX_1767 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein YP_005688514.1 PFAM: protein of unknown function DUF975; KEGG: clj:CLJU_c32220 hypothetical protein YP_005688515.1 PFAM: glycoside hydrolase family 1; manually curated; KEGG: dtu:Dtur_1799 beta-galactosidase; TIGRFAM: beta-galactosidase YP_005688516.1 KEGG: oaa:100075040 hypothetical protein LOC100075040 YP_005688517.1 PFAM: glycoside hydrolase family 16; Dockerin type 1; KEGG: cac:CA_C2807 endo-1,3(4)-beta-glucanase family protein 16 YP_005688518.1 KEGG: bha:BH3230 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_005688519.1 PFAM: glycosyl transferase family 2; KEGG: dth:DICTH_0207 glycosyltransferase YP_005688520.1 manually curated; KEGG: clj:CLJU_c28390 hypothetical protein YP_005688521.1 PFAM: UvrD/REP helicase; KEGG: clj:CLJU_c28400 putative helicase YP_005688522.1 KEGG: clj:CLJU_c28410 hypothetical protein YP_005688523.1 PFAM: protein of unknown function DUF1294; KEGG: cce:Ccel_2479 protein of unknown function DUF1294 YP_005688524.1 PFAM: ANTAR domain protein; KEGG: dhd:Dhaf_0995 response regulator receiver and ANTAR domain protein YP_005688525.1 manually curated; TIGRFAM: glutamine synthetase, type I; KEGG: dhd:Dhaf_0994 glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp YP_005688526.1 KEGG: tmt:Tmath_1316 glutamate synthase alpha subunit domain protein; manually curated; PFAM: glutamate synthase alpha subunit domain protein YP_005688527.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ate:Athe_2358 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_005688528.1 KEGG: dth:DICTH_0169 iron-sulfur cluster-binding protein YP_005688529.1 KEGG: rsd:TGRD_159 glutamate synthase large subunit GltB FMN-binding component; PFAM: ferredoxin-dependent glutamate synthase YP_005688530.1 PFAM: glutamine amidotransferase class-II; KEGG: tjr:TherJR_0711 glutamine amidotransferase class-II YP_005688531.1 PFAM: glutamine synthetase catalytic region; KEGG: brm:Bmur_0085 glutamine synthetase catalytic region YP_005688532.1 KEGG: car:cauri_0465 hypothetical protein YP_005688533.1 PFAM: sodium/hydrogen exchanger; KEGG: ctc:CTC02161 putative Na(+)/H(+) antiporter YP_005688534.1 KEGG: amt:Amet_2165 proteinase inhibitor I4, serpin; PFAM: proteinase inhibitor I4 serpin; Dockerin type 1; SMART: proteinase inhibitor I4 serpin YP_005688535.1 KEGG: amt:Amet_2165 proteinase inhibitor I4, serpin; PFAM: proteinase inhibitor I4 serpin; Dockerin type 1; SMART: proteinase inhibitor I4 serpin YP_005688536.1 KEGG: cce:Ccel_1353 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein YP_005688537.1 PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; manually curated; KEGG: ate:Athe_0837 ribonuclease PH; TIGRFAM: ribonuclease PH YP_005688538.1 KEGG: cce:Ccel_1351 hypothetical protein; manually curated; PFAM: Lipoprotein LpqB, GerMN domain YP_005688539.1 manually curated; TIGRFAM: UDP-glucose 4-epimerase; KEGG: cce:Ccel_3237 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_005688540.1 KEGG: cce:Ccel_1350 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; copper amine oxidase-like domain-containing protein; SMART: cell wall hydrolase/autolysin YP_005688541.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: cce:Ccel_2409 type IV pilus assembly protein PilM YP_005688542.1 PFAM: protein of unknown function DUF208; KEGG: cce:Ccel_1349 protein of unknown function DUF208 YP_005688543.1 TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; KEGG: cce:Ccel_1348 Holliday junction DNA helicase RuvB; SMART: AAA ATPase YP_005688544.1 KEGG: cce:Ccel_1347 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein YP_005688545.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: cce:Ccel_1346 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_005688546.1 PFAM: argininosuccinate synthase; manually curated; KEGG: cce:Ccel_1345 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase YP_005688547.1 KEGG: cce:Ccel_1344 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase YP_005688548.1 KEGG: smr:Smar_1481 metal-dependent phosphohydrolase, HD region YP_005688549.1 KEGG: cce:Ccel_1342 hypothetical protein YP_005688550.1 PFAM: polysaccharide deacetylase; KEGG: cce:Ccel_1341 polysaccharide deacetylase YP_005688551.1 PFAM: sulfatase; KEGG: cbb:CLD_0162 sulfatase family protein YP_005688552.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dae:Dtox_3923 dehydrogenase (flavoprotein)-like protein YP_005688553.1 KEGG: drm:Dred_1246 hypothetical protein YP_005688554.1 KEGG: dae:Dtox_2951 hypothetical protein YP_005688555.1 KEGG: tpd:Teth39_0560 hypothetical protein YP_005688556.1 PFAM: FAD dependent oxidoreductase; KEGG: tit:Thit_0239 dehydrogenase (flavoprotein)-like protein YP_005688557.1 KEGG: ssp:SSP0923 putative ABC-type polysaccharide polyol phosphate export system permease component YP_005688558.1 KEGG: ckr:CKR_0396 hypothetical protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_005688559.1 KEGG: tit:Thit_0752 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_005688560.1 KEGG: cce:Ccel_1326 hypothetical protein YP_005688561.1 PFAM: protein of unknown function UPF0044; KEGG: cce:Ccel_1324 protein of unknown function UPF0044 YP_005688562.1 KEGG: ate:Athe_1122 hypothetical protein YP_005688563.1 KEGG: cce:Ccel_1323 GTP-binding protein Obg/CgtA; TIGRFAM: GTP-binding protein Obg/CgtA; Obg family GTPase CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP1/OBG domain protein YP_005688564.1 KEGG: cce:Ccel_1322 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27 YP_005688565.1 PFAM: protein of unknown function DUF464; KEGG: cce:Ccel_1321 hypothetical protein YP_005688566.1 KEGG: cce:Ccel_1320 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21 YP_005688567.1 KEGG: cce:Ccel_1319 ribonuclease, Rne/Rng family; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein YP_005688568.1 PFAM: Protein of unknown function DUF2344; KEGG: cce:Ccel_1318 hypothetical protein YP_005688569.1 KEGG: cce:Ccel_1317 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_005688570.1 KEGG: aoe:Clos_1250 hypothetical protein YP_005688571.1 PFAM: protein of unknown function DUF1292; KEGG: cce:Ccel_2238 protein of unknown function DUF1292 YP_005688572.1 KEGG: cce:Ccel_2239 Holliday junction resolvase-like protein; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold YP_005688573.1 PFAM: aldo/keto reductase; KEGG: drm:Dred_0774 aldo/keto reductase YP_005688574.1 PFAM: protein of unknown function DUF965; KEGG: cce:Ccel_2240 hypothetical protein YP_005688575.1 TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; KEGG: cce:Ccel_2241 RNA modification enzyme, MiaB family; SMART: Elongator protein 3/MiaB/NifB YP_005688576.1 KEGG: cce:Ccel_2245 HPrNtr domain-containing protein; manually curated; PFAM: phosphoryl transfer system HPr YP_005688577.1 KEGG: cbb:CLD_1419 hypothetical protein; manually curated; PFAM: protein of unknown function DUF523 YP_005688578.1 TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; KEGG: cce:Ccel_2247 ribonuclease R; SMART: Cold shock protein YP_005688579.1 PFAM: transposase IS200-family protein; KEGG: dhd:Dhaf_3832 transposase IS200-family protein YP_005688580.1 KEGG: ate:Athe_2109 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain YP_005688581.1 KEGG: cce:Ccel_2253 preprotein translocase, SecG subunit; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit YP_005688582.1 TIGRFAM: enolase; KEGG: cce:Ccel_2254 phosphopyruvate hydratase; PFAM: Enolase-like YP_005688583.1 SMART: GGDEF domain containing protein; metal-dependent phosphohydrolase HD region; manually curated; TIGRFAM: diguanylate cyclase; KEGG: drm:Dred_0910 metal dependent phosphohydrolase; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase HD sub domain YP_005688584.1 PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein; manually curated; KEGG: cce:Ccel_2259 phosphoglyceromutase; TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent YP_005688585.1 TIGRFAM: triosephosphate isomerase; KEGG: cce:Ccel_2260 bifunctional phosphoglycerate kinase/triosephosphate isomerase; PFAM: triosephosphate isomerase YP_005688586.1 KEGG: cce:Ccel_2260 bifunctional phosphoglycerate kinase/triosephosphate isomerase; PFAM: phosphoglycerate kinase YP_005688587.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: cce:Ccel_2275 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_005688588.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: dps:DP0914 hypothetical protein YP_005688589.1 PFAM: Beta-ketoacyl synthase ; Acyl transferase; short-chain dehydrogenase/reductase SDR; KEGG: sus:Acid_3077 beta-ketoacyl synthase YP_005688590.1 KEGG: bcg:BCG9842_0006 YdjC YP_005688591.1 PFAM: AMP-dependent synthetase and ligase; KEGG: npu:Npun_R2067 AMP-dependent synthetase and ligase YP_005688592.1 KEGG: xca:xccb100_3342 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_005688593.1 PFAM: phosphopantetheine-binding; KEGG: gdj:Gdia_3407 acyl carrier protein YP_005688594.1 KEGG: mca:MCA2003 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_005688595.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase HD sub domain; KEGG: cby:CLM_0401 GGDEF/HD domain protein; SMART: GGDEF domain containing protein; metal-dependent phosphohydrolase HD region YP_005688596.1 KEGG: cce:Ccel_2278 tRNA/rRNA methyltransferase (SpoU); TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU) YP_005688597.1 PFAM: CheC domain protein; KEGG: cce:Ccel_2279 CheC domain protein YP_005688598.1 KEGG: tjr:TherJR_1651 stage V sporulation protein ae YP_005688599.1 KEGG: cce:Ccel_2280 stage V sporulation protein AE; TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein YP_005688600.1 KEGG: cce:Ccel_2281 stage V sporulation protein AD; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein YP_005688601.1 KEGG: cce:Ccel_2282 stage V sporulation protein AC; TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein YP_005688603.1 KEGG: cce:Ccel_2284 RNA polymerase, sigma 28 subunit, SigF; TIGRFAM: RNA polymerase sigma-F factor; RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein YP_005688604.1 SMART: ATP-binding region ATPase domain protein; TIGRFAM: anti-sigma F factor; KEGG: cce:Ccel_2285 anti-sigma F factor; PFAM: ATP-binding region ATPase domain protein YP_005688605.1 KEGG: cce:Ccel_2286 anti-sigma-factor antagonist; TIGRFAM: anti-sigma F factor antagonist; anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS YP_005688606.1 KEGG: tte:TTE1820 phosphotransferase system, HPr-related proteins; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr YP_005688607.1 PFAM: protein of unknown function DUF199; Sporulation regulator WhiA-like; KEGG: amt:Amet_4088 hypothetical protein YP_005688608.1 TIGRFAM: glycogen debranching enzyme; KEGG: cce:Ccel_2288 glycogen debranching enzyme; PFAM: Amylo-alpha-16-glucosidase YP_005688609.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: cce:Ccel_2289 protein of unknown function UPF0052 and CofD YP_005688610.1 KEGG: cce:Ccel_2290 hypothetical protein YP_005688611.1 TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: cce:Ccel_2291 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain-containing protein; FAD linked oxidase domain protein YP_005688612.1 KEGG: cce:Ccel_2292 putative hydrolase; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein YP_005688613.1 KEGG: cce:Ccel_2293 HPr kinase; TIGRFAM: HPr(Ser) kinase/phosphatase; PFAM: HPr serine kinase domain-containing protein YP_005688614.1 PFAM: Dockerin type 1; KEGG: mba:Mbar_A2782 cell surface protein YP_005688615.1 PFAM: type IV pilus assembly PilZ; KEGG: cce:Ccel_2317 type IV pilus assembly PilZ YP_005688616.1 KEGG: cce:Ccel_2003 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase YP_005688617.1 KEGG: cce:Ccel_2004 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II YP_005688618.1 TIGRFAM: riboflavin synthase, alpha subunit; KEGG: cce:Ccel_2005 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein YP_005688619.1 TIGRFAM: riboflavin biosynthesis protein RibD; KEGG: cce:Ccel_2006 riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding YP_005688620.1 PFAM: protein of unknown function UPF0047; KEGG: trq:TRQ2_0947 hypothetical protein YP_005688621.1 KEGG: cbt:CLH_0861 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase YP_005688622.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: tmt:Tmath_0350 iron-containing alcohol dehydrogenase YP_005688623.1 KEGG: cce:Ccel_0027 hypothetical protein YP_005688624.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: drm:Dred_2192 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_005688625.1 KEGG: cce:Ccel_2547 peptidase M50; manually curated; PFAM: peptidase M50; CBS domain containing protein YP_005688626.1 PFAM: Peptidase M23; KEGG: cce:Ccel_2548 peptidase M23 YP_005688627.1 PFAM: protein of unknown function UPF0180; KEGG: cce:Ccel_3466 protein of unknown function UPF0180 YP_005688628.1 TIGRFAM: methylglyoxal synthase; KEGG: csc:Csac_1874 methylglyoxal synthase; PFAM: MGS domain protein YP_005688629.1 KEGG: cce:Ccel_2557 cell division topological specificity factor MinE; TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE YP_005688630.1 TIGRFAM: septum site-determining protein MinD; KEGG: cce:Ccel_2558 septum site-determining protein MinD YP_005688631.1 KEGG: cce:Ccel_2559 septum formation inhibitor; TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC YP_005688632.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; manually curated; KEGG: cce:Ccel_2560 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2 YP_005688633.1 KEGG: cce:Ccel_2561 rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD YP_005688634.1 KEGG: cce:Ccel_2562 rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC YP_005688635.1 KEGG: cce:Ccel_2563 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl YP_005688636.1 KEGG: tpd:Teth39_1454 maf protein; TIGRFAM: maf protein; PFAM: Maf family protein YP_005688637.1 KEGG: cin:100186226 similar to pleckstrin homology-like domain, family B, member 1 YP_005688638.1 PFAM: Negative regulator of genetic competence; KEGG: cce:Ccel_2566 negative regulator of genetic competence YP_005688639.1 KEGG: amt:Amet_3673 hypothetical protein YP_005688640.1 KEGG: amt:Amet_1030 stage II sporulation E family protein; PFAM: Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein YP_005688641.1 SMART: peptidase S16 lon domain protein; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: cce:Ccel_2568 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein YP_005688642.1 TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; KEGG: cce:Ccel_2098 arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ YP_005688643.1 KEGG: ate:Athe_2102 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_005688644.1 KEGG: pjd:Pjdr2_0812 hypothetical protein YP_005688645.1 KEGG: cce:Ccel_2664 hypothetical protein YP_005688646.1 KEGG: cce:Ccel_1337 hypothetical protein YP_005688647.1 KEGG: cce:Ccel_1336 hypothetical protein YP_005688648.1 KEGG: pfa:PF11_0207 conserved Plasmodium protein YP_005688649.1 KEGG: tte:TTE0873 hypothetical protein YP_005688650.1 KEGG: aoe:Clos_1043 hypothetical protein YP_005688651.1 PFAM: PspC domain protein; KEGG: amt:Amet_3314 phage shock protein C, PspC YP_005688652.1 KEGG: cpy:Cphy_3368 cellulose 1,4-beta-cellobiosidase; PFAM: glycoside hydrolase family 48; type 3a cellulose-binding domain protein YP_005688653.1 KEGG: cce:Ccel_2574 asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type YP_005688654.1 TIGRFAM: aspartate/ammonia ligase; KEGG: cce:Ccel_2575 asparagine synthetase AsnA; PFAM: aspartate--ammonia ligase YP_005688655.1 KEGG: cce:Ccel_3079 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type YP_005688656.1 PFAM: Silent information regulator protein Sir2; KEGG: clj:CLJU_c01320 NAD-dependent deacetylase YP_005688657.1 KEGG: cbb:CLD_3291 hypothetical protein YP_005688658.1 KEGG: cno:NT01CX_0223 hypothetical protein YP_005688659.1 KEGG: afn:Acfer_0490 Na/Pi-cotransporter II-related protein; TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter YP_005688660.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cbe:Cbei_2158 rubredoxin-type Fe(Cys)4 protein YP_005688661.1 PFAM: sulfatase; KEGG: cbi:CLJ_B3115 sulfatase family protein YP_005688662.1 PFAM: BioY protein; KEGG: cby:CLM_1052 BioY family protein YP_005688663.1 PFAM: SEC-C motif domain protein; KEGG: cce:Ccel_2572 hypothetical protein YP_005688664.1 PFAM: type 3a cellulose-binding domain protein; KEGG: cce:Ccel_1740 hypothetical protein YP_005688665.1 TIGRFAM: RNA polymerase sigma-I factor; KEGG: cbe:Cbei_2829 putative RNA polymerase sigma factor SigI YP_005688666.1 KEGG: aoe:Clos_2167 hypothetical protein YP_005688667.1 KEGG: cpy:Cphy_2500 Ig domain-containing protein; PFAM: S-layer domain-containing protein; Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein YP_005688668.1 KEGG: cce:Ccel_1170 hypothetical protein YP_005688669.1 PFAM: protein of unknown function DUF187; S-layer domain-containing protein; KEGG: amt:Amet_3669 hypothetical protein YP_005688670.1 TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; KEGG: cce:Ccel_2401 ribonucleotide-diphosphate reductase subunit alpha; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein YP_005688671.1 KEGG: cce:Ccel_2402 hypothetical protein YP_005688672.1 KEGG: cce:Ccel_2402 hypothetical protein YP_005688673.1 KEGG: cac:CA_C0870 hypothetical protein YP_005688674.1 KEGG: cce:Ccel_1150 XRE family plasmid maintenance system antidote protein; PFAM: helix-turn-helix domain protein; Peptidase S24/S26A/S26B, conserved region; SMART: helix-turn-helix domain protein YP_005688675.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: tjr:TherJR_0805 copper amine oxidase domain protein YP_005688676.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: tjr:TherJR_0805 copper amine oxidase domain protein YP_005688677.1 KEGG: pth:PTH_0170 hypothetical protein YP_005688678.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: tjr:TherJR_0863 copper amine oxidase domain protein YP_005688679.1 PFAM: Spore coat protein CotH; Dockerin type 1; KEGG: gau:GAU_1784 hypothetical protein YP_005688680.1 PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; Dockerin type 1; KEGG: cce:Ccel_0231 glycoside hydrolase family 9 YP_005688681.1 KEGG: cpy:Cphy_2081 small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related YP_005688682.1 KEGG: gtn:GTNG_1264 hypothetical protein YP_005688683.1 PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; KEGG: csc:Csac_1076 glycoside hydrolase family protein YP_005688684.1 KEGG: cce:Ccel_2313 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_005688685.1 KEGG: cce:Ccel_2314 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_005688686.1 KEGG: cce:Ccel_2313 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_005688687.1 KEGG: cce:Ccel_2314 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_005688688.1 PFAM: heat shock protein Hsp20; KEGG: hth:HTH_0332 small heat shock protein HSP20 YP_005688689.1 KEGG: cce:Ccel_0749 hydroxylamine reductase; TIGRFAM: hybrid cluster protein; PFAM: Prismane YP_005688690.1 KEGG: cdf:CD2169 iron-sulfur binding protein YP_005688691.1 KEGG: cpy:Cphy_3149 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding YP_005688692.1 TIGRFAM: small GTP-binding protein; PFAM: protein of unknown function DUF901; elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor G domain-containing protein; KEGG: cce:Ccel_1053 small GTP-binding protein; SMART: elongation factor G domain IV; elongation factor G domain-containing protein YP_005688693.1 PFAM: Dockerin type 1; KEGG: cce:Ccel_1551 glycoside hydrolase family 26 YP_005688694.1 PFAM: Protein of unknown function DUF2174-like; KEGG: fsu:Fisuc_0606 hypothetical protein YP_005688695.1 PFAM: Nucleotidyltransferase, predicted; KEGG: cby:CLM_2617 hypothetical protein YP_005688696.1 KEGG: ate:Athe_2542 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III YP_005688697.1 KEGG: bmq:BMQ_3717 biotin biosynthesis protein BioC; TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11 YP_005688698.1 manually curated; KEGG: bmq:BMQ_3716 biotin biosynthesis protein BioH; PFAM: alpha/beta hydrolase fold YP_005688699.1 PFAM: aminotransferase class I and II; manually curated; KEGG: tex:Teth514_0779 pyridoxal phosphate-dependent acyltransferase, putative; TIGRFAM: 8-amino-7-oxononanoate synthase YP_005688700.1 KEGG: csc:Csac_0305 dethiobiotin synthase; manually curated; TIGRFAM: dethiobiotin synthase YP_005688701.1 KEGG: tjr:TherJR_0016 biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; manually curated; TIGRFAM: biotin synthase; SMART: Elongator protein 3/MiaB/NifB; biotin and thiamin synthesis associated YP_005688702.1 PFAM: protein of unknown function DUF1538; KEGG: dhd:Dhaf_1786 protein of unknown function DUF1538 YP_005688703.1 PFAM: Ferritin Dps family protein; KEGG: apr:Apre_1391 ferritin Dps family protein YP_005688704.1 PFAM: alpha-L-arabinofuranosidase B; Dockerin type 1; glycoside hydrolase family 43; KEGG: bsu:BSU39330 arabinan endo-1,5-alpha-L-arabinosidase YP_005688705.1 KEGG: ptm:GSPATT00035077001 hypothetical protein YP_005688706.1 manually curated; KEGG: afl:Aflv_0562 hypothetical protein YP_005688707.1 KEGG: cce:Ccel_1068 protein tyrosine phosphatase YP_005688708.1 KEGG: bwe:BcerKBAB4_4445 hypothetical protein YP_005688709.1 manually curated; KEGG: npu:Npun_F1419 WD-40 repeat-containing protein YP_005688710.1 KEGG: tpd:Teth39_2032 transposase, mutator type; manually curated; PFAM: transposase mutator type YP_005688711.1 KEGG: pth:PTH_2444 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_005688712.1 KEGG: pth:PTH_2443 hypothetical protein; manually curated; PFAM: protein of unknown function DUF891 YP_005688713.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: ere:EUBREC_1225 peroxiredoxin YP_005688714.1 PFAM: protein of unknown function DUF1706; KEGG: seq:SZO_12730 hypothetical protein YP_005688715.1 KEGG: fno:Fnod_0812 hypothetical protein YP_005688716.1 KEGG: pjd:Pjdr2_5633 RNA polymerase sigma factor SigW; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_005688717.1 PFAM: glycoside hydrolase family 5; KEGG: tbi:Tbis_2319 family 5 glycoside hydrolase YP_005688718.1 KEGG: cce:Ccel_0840 glycoside hydrolase family 5; manually curated; PFAM: glycoside hydrolase family 5; Dockerin type 1 YP_005688719.1 PFAM: NADPH-dependent FMN reductase; KEGG: ele:Elen_1278 NADPH-dependent FMN reductase YP_005688720.1 manually curated; KEGG: hmo:HM1_2511 sigma-54 dependent transcriptional regulator YP_005688721.1 KEGG: tle:Tlet_0370 carbamoyl-phosphate synthase, large subunit YP_005688722.1 KEGG: ele:Elen_1249 deoxycytidine triphosphate deaminase; TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase YP_005688723.1 PFAM: regulatory protein TetR; KEGG: cpy:Cphy_0176 TetR family transcriptional regulator YP_005688724.1 KEGG: ere:EUBREC_0239 hypothetical protein YP_005688725.1 KEGG: eel:EUBELI_00031 hypothetical protein YP_005688726.1 manually curated; KEGG: ere:EUBREC_3014 transmembrane protein YP_005688727.1 KEGG: clj:CLJU_c24920 putative hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_005688728.1 KEGG: aoe:Clos_0811 hypothetical protein YP_005688729.1 KEGG: lac:LBA0355 transcriptional regulator YP_005688730.1 SMART: beta-lactamase domain protein; KEGG: aoe:Clos_0139 beta-lactamase domain-containing protein YP_005688731.1 PFAM: NUDIX hydrolase; KEGG: dhd:Dhaf_2293 mutator MutT protein YP_005688732.1 manually curated; KEGG: cby:CLM_1089 hypothetical protein YP_005688733.1 KEGG: cce:Ccel_3226 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_005688734.1 KEGG: pfa:MAL7P1.146 hypothetical protein YP_005688735.1 KEGG: cbh:CLC_1041 hypothetical protein YP_005688736.1 PFAM: transcriptional regulator PadR family protein; KEGG: sak:SAK_1972 PadR family transcriptional regulator YP_005688737.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: apv:Apar_1266 NAD(P)H dehydrogenase (quinone) YP_005688738.1 KEGG: apv:Apar_1267 transcriptional regulator, PadR-like family; manually curated; PFAM: transcriptional regulator PadR family protein YP_005688739.1 KEGG: tde:TDE2739 hypothetical protein; manually curated; PFAM: protein of unknown function DUF6 transmembrane YP_005688740.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: slp:Slip_0090 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein YP_005688741.1 KEGG: clj:CLJU_c26800 hypothetical protein YP_005688742.1 KEGG: cce:Ccel_2313 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_005688743.1 KEGG: afw:Anae109_3636 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter; nitrogen regulatory protein P-II YP_005688744.1 KEGG: bfs:BF2979 putative ABC transport system, membrane protein; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase YP_005688745.1 manually curated; PFAM: ABC transporter transmembrane region; ABC transporter related; KEGG: ate:Athe_2619 ABC transporter related; SMART: AAA ATPase YP_005688746.1 KEGG: tle:Tlet_1610 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_005688747.1 KEGG: ate:Athe_0416 hypothetical protein YP_005688748.1 PFAM: Linocin_M18 bacteriocin protein; KEGG: ele:Elen_3018 Linocin_M18 bacteriocin protein YP_005688749.1 PFAM: S-layer domain-containing protein; KEGG: drm:Dred_2998 S-layer domain-containing protein YP_005688750.1 KEGG: ere:EUBREC_2808 metal dependent phosphohydrolase; manually curated; PFAM: protein of unknown function DUF1113; metal-dependent phosphohydrolase HD sub domain YP_005688751.1 PFAM: AIG2 family protein; KEGG: cpf:CPF_1677 hypothetical protein YP_005688752.1 PFAM: arsenate reductase and related; KEGG: dhd:Dhaf_2269 arsenate reductase and related YP_005688753.1 PFAM: protein of unknown function DUF438; Hemerythrin HHE cation binding domain protein; KEGG: dhd:Dhaf_2669 protein of unknown function DUF438 YP_005688754.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cbe:Cbei_1961 short-chain dehydrogenase/reductase SDR YP_005688755.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: chy:CHY_2212 putative DNA methylase YP_005688756.1 manually curated; KEGG: cpo:COPRO5265_1446 type II restriction enzyme R protein; PFAM: DpmII restriction endonuclease YP_005688757.1 manually curated; TIGRFAM: DNA adenine methylase; KEGG: chy:CHY_2213 DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_005688758.1 PFAM: protein of unknown function DUF125 transmembrane; Rubrerythrin; KEGG: hor:Hore_01890 uncharacterized membrane protein YP_005688759.1 KEGG: cpy:Cphy_1138 ribosome small subunit-dependent GTPase A; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC YP_005688761.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: aeh:Mlg_2780 type I phosphodiesterase/nucleotide pyrophosphatase YP_005688762.1 KEGG: lin:lin0661 internalin-like protein YP_005688763.1 KEGG: shi:Shel_22980 SAM-dependent methyltransferase YP_005688764.1 manually curated; KEGG: cbe:Cbei_2623 hypothetical protein YP_005688765.1 manually curated; KEGG: ssc:100157546 ubiquitin specific peptidase 8 YP_005688766.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: tjr:TherJR_0863 copper amine oxidase domain protein YP_005688767.1 KEGG: hsm:HSM_0705 TRAP transporter solute receptor TAXI family protein YP_005688768.1 PFAM: NADPH-dependent FMN reductase; KEGG: shi:Shel_00760 hypothetical protein YP_005688769.1 KEGG: hpb:HELPY_1007 putative polysaccharide biosynthesis protein; PFAM: glycosyl transferase group 1; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_005688770.1 KEGG: sth:STH2580 hypothetical protein YP_005688771.1 PFAM: protein of unknown function DUF214; KEGG: ckr:CKR_0316 hypothetical protein YP_005688772.1 KEGG: clj:CLJU_c14420 putative ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase YP_005688773.1 KEGG: ckr:CKR_0312 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_005688774.1 KEGG: clj:CLJU_c14390 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing protein YP_005688775.1 KEGG: mac:MA1341 FMN-binding protein; manually curated; PFAM: flavin reductase domain protein FMN-binding YP_005688776.1 KEGG: tye:THEYE_A1993 chromosome segregation SMC protein, putative YP_005688777.1 KEGG: ckr:CKR_2198 hypothetical protein YP_005688778.1 KEGG: cdf:CD0293 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_005688779.1 manually curated; KEGG: lrl:LC705_00137 hypothetical protein YP_005688780.1 manually curated; PFAM: helix-turn-helix domain protein; KEGG: clj:CLJU_c40130 transcriptional regulator; SMART: helix-turn-helix domain protein YP_005688781.1 KEGG: tmt:Tmath_1325 glutamine synthetase catalytic region; manually curated; PFAM: glutamine synthetase catalytic region YP_005688782.1 SMART: Asn/Gln amidotransferase; manually curated; KEGG: csc:Csac_0910 aspartyl/glutamyl-tRNA amidotransferase subunit B; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; Asn/Gln amidotransferase YP_005688783.1 KEGG: csc:Csac_0909 aspartyl/glutamyl-tRNA amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase YP_005688784.1 KEGG: tpd:Teth39_1693 aspartyl/glutamyl-tRNA amidotransferase subunit C; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit YP_005688785.1 KEGG: eel:EUBELI_00444 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein YP_005688786.1 KEGG: cpy:Cphy_1657 hypothetical protein YP_005688787.1 KEGG: dba:Dbac_0334 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_005688788.1 PFAM: Protein of unknown function DUF2871; KEGG: aoe:Clos_0669 hypothetical protein YP_005688789.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sso:SSO2624 enoyl CoA hydratase (PaaF-7) YP_005688790.1 PFAM: Methyltransferase type 12; KEGG: mac:MA1733 hypothetical protein YP_005688791.1 KEGG: pfd:PFDG_02325 hypothetical protein similar to merozoite antigen erythrocyte-binding ligand YP_005688792.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: cpy:Cphy_2559 hypothetical protein YP_005688793.1 KEGG: afn:Acfer_0164 methylated-DNA/protein-cysteinemethyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding YP_005688794.1 PFAM: NLPA lipoprotein; KEGG: ckr:CKR_0740 hypothetical protein YP_005688795.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shi:Shel_25820 ABC-type metal ion transport system, permease component YP_005688796.1 KEGG: ckr:CKR_0738 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_005688797.1 manually curated; TIGRFAM: transcriptional regulator, Rrf2 family; KEGG: cce:Ccel_0924 transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074 YP_005688798.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: fsu:Fisuc_1079 cystathionine gamma-synthase YP_005688799.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cpy:Cphy_1228 pyridoxal-5'-phosphate-dependent protein beta subunit YP_005688800.1 KEGG: bll:BLJ_0857 hypothetical protein YP_005688801.1 PFAM: protein of unknown function DUF214; KEGG: bde:BDP_1014 hypothetical protein YP_005688802.1 KEGG: fnu:FN1348 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_005688803.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY3675 hypothetical protein YP_005688804.1 KEGG: ckr:CKR_0741 hypothetical protein; manually curated; PFAM: oxidoreductase/nitrogenase component 1 YP_005688805.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: cbe:Cbei_0621 nitrogenase YP_005688806.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: cbe:Cbei_0627 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_005688807.1 KEGG: fsu:Fisuc_1076 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_005688808.1 KEGG: ckr:CKR_1913 hypothetical protein; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_005688809.1 SMART: extracellular solute-binding protein family 3; KEGG: cbe:Cbei_0604 NMT1/THI5-like protein YP_005688810.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ckr:CKR_1910 hypothetical protein YP_005688811.1 KEGG: ckr:CKR_1909 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_005688812.1 TIGRFAM: nitrogenase iron protein; KEGG: cbe:Cbei_0623 nitrogenase iron protein; PFAM: NifH/frxC-family protein YP_005688813.1 KEGG: pay:PAU_03340 hypothetical protein YP_005688814.1 KEGG: cpy:Cphy_0752 purine nucleoside phosphorylase; TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1 YP_005688815.1 PFAM: basic membrane lipoprotein; KEGG: tmt:Tmath_0512 basic membrane lipoprotein YP_005688816.1 KEGG: cbl:CLK_3052 hypothetical protein YP_005688817.1 KEGG: cbf:CLI_3805 radical SAM domain-containing protein; PFAM: Radical SAM domain protein YP_005688818.1 KEGG: gyc:GYMC61_2069 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_005688819.1 PFAM: inner-membrane translocator; KEGG: fma:FMG_1011 ribose/galactoside ABC transporter permease protein YP_005688820.1 PFAM: inner-membrane translocator; KEGG: fma:FMG_1010 ribose/galactoside ABC transporter permease protein YP_005688821.1 KEGG: clo:HMPREF0868_0651 cytidine deaminase; TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding YP_005688822.1 TIGRFAM: deoxyribose-phosphate aldolase; KEGG: cpy:Cphy_0753 deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_005688823.1 KEGG: gym:GYMC10_1096 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_005688824.1 KEGG: bcl:ABC3647 two-component sensor histidine kinase; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_005688825.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: clo:HMPREF0868_0301 ABC transporter, permease protein YP_005688826.1 KEGG: fnu:FN0376 iron(III)-transport ATP-binding protein SfuC; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase YP_005688827.1 PFAM: extracellular solute-binding protein family 1; KEGG: clo:HMPREF0868_0299 bacterial extracellular solute-binding protein YP_005688828.1 PFAM: Penicillinase repressor; KEGG: hmo:HM1_2921 hypothetical protein YP_005688829.1 PFAM: peptidase M56 BlaR1; KEGG: ckr:CKR_3089 hypothetical protein YP_005688831.1 KEGG: amr:AM1_C0042 hypothetical protein YP_005688832.1 TIGRFAM: glycerate kinase; KEGG: tde:TDE0208 glycerate kinase; PFAM: glycerate kinase YP_005688833.1 KEGG: bts:Btus_2106 hypothetical protein YP_005688834.1 PFAM: PglZ domain protein; KEGG: tit:Thit_1347 PglZ domain protein YP_005688835.1 KEGG: tpd:Teth39_0928 helicase domain-containing protein; PFAM: SNF2-related protein; helicase domain protein; SMART: helicase domain protein; DEAD-like helicase YP_005688836.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: tpd:Teth39_0927 DNA methylase N-4/N-6 domain-containing protein YP_005688837.1 PFAM: Integrase catalytic region; transposase IS3/IS911 family protein; KEGG: cce:Ccel_2178 transposase IS3/IS911 family protein YP_005688838.1 KEGG: mif:Metin_0662 TPR repeat-containing protein; manually curated; PFAM: Protein of unknown function DUF2971 YP_005688839.1 manually curated; PFAM: HhH-GPD family protein; KEGG: bhy:BHWA1_00690 hypothetical protein; SMART: iron-sulfur cluster loop YP_005688840.1 KEGG: pth:PTH_1527 hypothetical protein YP_005688841.1 KEGG: ssp:SSP0073 putative restriction endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease YP_005688842.1 PFAM: NUDIX hydrolase; KEGG: rbi:RB2501_07100 NUDIX (MutT) family hydrolase/pyrophosphatase YP_005688843.1 KEGG: tde:TDE1752 ISTde2, transposase; manually curated; PFAM: Integrase catalytic region YP_005688844.1 KEGG: pmo:Pmob_0430 resolvase domain-containing protein; PFAM: Resolvase domain; Recombinase; SMART: Resolvase domain YP_005688845.1 PFAM: Recombinase; KEGG: ckr:CKR_2322 hypothetical protein YP_005688846.1 PFAM: Resolvase domain; Recombinase; KEGG: pmo:Pmob_0428 resolvase domain-containing protein YP_005688847.1 KEGG: pmo:Pmob_0427 hypothetical protein YP_005688848.1 KEGG: pmo:Pmob_0425 peptidoglycan-binding LysM; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; Peptidoglycan-binding lysin domain; SMART: N-acetylmuramoyl-L-alanine amidase family 2; Peptidoglycan-binding LysM YP_005688849.1 KEGG: pmo:Pmob_0424 toxin secretion/phage lysis holin; TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis YP_005688850.1 KEGG: hmo:HM1_2869 hypothetical protein YP_005688851.1 KEGG: hmo:HM1_2870 hypothetical protein YP_005688852.1 KEGG: tex:Teth514_1266 hypothetical protein YP_005688853.1 TIGRFAM: phage minor structural protein; KEGG: hmo:HM1_2871 phage minor structural protein, N-terminal YP_005688854.1 KEGG: hmo:HM1_2872 phage tail component, N-terminal domain, putative; TIGRFAM: phage tail component; PFAM: tail component family protein YP_005688855.1 KEGG: cce:Ccel_2825 hypothetical protein YP_005688856.1 KEGG: hmo:HM1_2968 hypothetical protein YP_005688857.1 KEGG: hmo:HM1_2874 hypothetical protein YP_005688858.1 TIGRFAM: phage major tail protein, phi13 family; KEGG: hmo:HM1_2875 phage major tail protein, phi13 family YP_005688859.1 KEGG: hmo:HM1_2876 hypothetical protein YP_005688860.1 TIGRFAM: phage protein, HK97 gp10 family; KEGG: hmo:HM1_2877 phage protein, hk97 GP10 family, putative YP_005688861.1 PFAM: head-tail joining family protein; KEGG: hmo:HM1_2878 phage head-tail adaptor, putative YP_005688862.1 PFAM: Bacteriophage QLRG family, putative DNA packaging; KEGG: hmo:HM1_2879 phage protein, uncharacterized YP_005688863.1 TIGRFAM: phage major capsid protein, HK97 family; KEGG: hmo:HM1_2880 phage major capsid protein, hk97 family YP_005688864.1 PFAM: peptidase S14 ClpP; KEGG: hmo:HM1_2881 peptidase S14, ClpP YP_005688865.1 KEGG: hmo:HM1_2882 phage portal protein, hk97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein YP_005688866.1 PFAM: Terminase; KEGG: bse:Bsel_0788 terminase YP_005688867.1 KEGG: hmo:HM1_2957 hypothetical protein YP_005688868.1 PFAM: AIG2 family protein; KEGG: hmo:HM1_2884 hypothetical protein YP_005688869.1 PFAM: Putative amidoligase enzyme; KEGG: ckr:CKR_2345 hypothetical protein YP_005688870.1 KEGG: hmo:HM1_2887 hypothetical protein YP_005688871.1 KEGG: hmo:HM1_2888 hypothetical protein YP_005688872.1 KEGG: hmo:HM1_2889 hypothetical protein YP_005688873.1 KEGG: hmo:HM1_2890 DNA methylase, family protein; PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_005688874.1 KEGG: hmo:HM1_2891 DNA methylase; PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_005688875.1 KEGG: hmo:HM1_2892 hypothetical protein YP_005688876.1 KEGG: tex:Teth514_1241 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease YP_005688877.1 manually curated; KEGG: clj:CLJU_c03450 hypothetical protein YP_005688878.1 KEGG: tex:Teth514_1240 hypothetical protein YP_005688879.1 PFAM: VRR-NUC domain-containing protein; KEGG: hmo:HM1_2894 hypothetical protein YP_005688880.1 KEGG: cbl:CLK_1342 DNA primase related protein YP_005688881.1 KEGG: cdl:CDR20291_0400 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_005688882.1 PFAM: protein of unknown function DUF214; KEGG: cac:CA_C2731 permease YP_005688883.1 KEGG: apr:Apre_0742 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_005688884.1 KEGG: cdl:CDR20291_0403 two-component response regulator; PFAM: transcriptional regulator domain-containing protein; response regulator receiver; SMART: response regulator receiver YP_005688885.1 KEGG: ote:Oter_2963 beta-lactamase domain-containing protein YP_005688886.1 KEGG: esi:Exig_0440 hypothetical protein YP_005688887.1 KEGG: aoe:Clos_1847 hypothetical protein YP_005688890.1 manually curated; TIGRFAM: RNA methyltransferase, TrmA family; KEGG: cce:Ccel_2868 RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; Methyltransferase type 11; (Uracil-5)-methyltransferase YP_005688891.1 manually curated; PFAM: ABC transporter related; KEGG: clj:CLJU_c05840 putative Fe3+ ABC transporter ATPase; SMART: AAA ATPase YP_005688892.1 KEGG: cno:NT01CX_2085 iron (III) dicitrate transport system permease protein; manually curated; PFAM: transport system permease protein YP_005688893.1 PFAM: periplasmic binding protein; KEGG: cno:NT01CX_2084 iron compound ABC transporter, iron compound-binding protein, putative YP_005688894.1 KEGG: gur:Gura_2274 putative virion core protein (lumpy skin disease virus)-like protein YP_005688895.1 PFAM: Peptidase M23; KEGG: tpd:Teth39_1491 peptidase M23B YP_005688896.1 PFAM: protein of unknown function DUF583; KEGG: aoe:Clos_0181 hypothetical protein YP_005688897.1 KEGG: tte:TTE1683 hypothetical protein; TIGRFAM: sporulation protein YunB; PFAM: Sporulation protein YunB-like YP_005688898.1 TIGRFAM: penicillin-binding protein, 1A family; KEGG: cce:Ccel_2876 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_005688899.1 PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_0469 protein of unknown function DUF214 YP_005688900.1 KEGG: cce:Ccel_0468 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_005688901.1 KEGG: cce:Ccel_0466 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_005688902.1 PFAM: outer membrane efflux protein; KEGG: tjr:TherJR_2832 outer membrane efflux protein YP_005688903.1 KEGG: cce:Ccel_3396 outer membrane protein-like protein YP_005688904.1 KEGG: cpf:CPF_2904 gamma-glutamyl kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase YP_005688905.1 KEGG: cce:Ccel_0323 hypothetical protein YP_005688906.1 KEGG: cce:Ccel_0322 NifU-like domain-containing protein YP_005688907.1 KEGG: tet:TTHERM_00729070 hypothetical protein YP_005688908.1 KEGG: lba:Lebu_2088 major facilitator superfamily MFS_1 YP_005688909.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cpy:Cphy_3121 rubrerythrin YP_005688910.1 PFAM: protein of unknown function DUF218; KEGG: cce:Ccel_2459 protein of unknown function DUF218 YP_005688911.1 KEGG: cce:Ccel_0802 peptidase S16, lon-like protein YP_005688912.1 KEGG: tte:TTE0537 acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_005688913.1 PFAM: peptidase M22 glycoprotease; KEGG: cce:Ccel_0800 peptidase M22 glycoprotease YP_005688914.1 PFAM: Uncharacterised protein family UPF0079, ATPase; KEGG: cce:Ccel_0799 protein of unknown function UPF0079 YP_005688915.1 PFAM: amidohydrolase; KEGG: cce:Ccel_0798 amidohydrolase YP_005688916.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: cpo:COPRO5265_1473 protease, putative YP_005688917.1 KEGG: gwc:GWCH70_1303 hypothetical protein YP_005688918.1 KEGG: clj:CLJU_c34990 hypothetical protein YP_005688919.1 KEGG: tac:Ta1310 potassium-transporting ATPase subunit A YP_005688920.1 PFAM: ribosomal protein S9; KEGG: cce:Ccel_0795 30S ribosomal protein S9 YP_005688921.1 KEGG: cce:Ccel_0794 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13 YP_005688922.1 KEGG: cce:Ccel_0339 hypothetical protein YP_005688923.1 PFAM: DNA integrity scanning, DisA, linker region; protein of unknown function DUF147; KEGG: cce:Ccel_0337 DNA integrity scanning protein DisA YP_005688924.1 TIGRFAM: DNA repair protein RadA; PFAM: Circadian clock protein KaiC central region; KEGG: cdf:CD0027 DNA repair protein RadA; SMART: AAA ATPase YP_005688925.1 PFAM: glycoside hydrolase 15-related; KEGG: cce:Ccel_0335 glycoside hydrolase 15-related YP_005688926.1 PFAM: glycosyl transferase family 2; KEGG: cce:Ccel_0333 glycosyl transferase family 2 YP_005688927.1 KEGG: cce:Ccel_0327 ATPase AAA-2 domain protein; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; UvrB/UvrC protein; Clp ATPase-like; SMART: AAA ATPase YP_005688928.1 PFAM: ATP:guanido phosphotransferase; KEGG: cce:Ccel_0326 ATP:guanido phosphotransferase YP_005688929.1 PFAM: UvrB/UvrC protein; KEGG: cce:Ccel_0325 UvrB/UvrC protein YP_005688930.1 PFAM: Firmicute transcriptional repressor of class III stress genes; KEGG: cce:Ccel_0324 transcriptional repressor, CtsR YP_005688931.1 KEGG: cce:Ccel_2879 elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein YP_005688932.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: cce:Ccel_2880 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_005688933.1 KEGG: cce:Ccel_2881 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; amino acid-binding ACT domain protein YP_005688934.1 KEGG: tte:TTE1015 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_005688935.1 PFAM: CoA-binding domain protein; Rex DNA-binding domain protein; KEGG: cce:Ccel_2882 redox-sensing transcriptional repressor REX YP_005688936.1 KEGG: cce:Ccel_2884 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_005688937.1 manually curated; PFAM: Peptidoglycan-binding lysin domain; SH3 type 3 domain protein; glycoside hydrolase family 18; KEGG: cbf:CLI_1294 glycosy hydrolase family protein; SMART: Peptidoglycan-binding LysM; SH3 domain protein; chitinase II YP_005688938.1 KEGG: cce:Ccel_1184 cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_005688939.1 KEGG: hmo:HM1_3001 cobalt abc transporter, permease protein CbiQ; TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein YP_005688940.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: hmo:HM1_3002 cobalamin biosynthesis protein CbiM YP_005688941.1 KEGG: cce:Ccel_2890 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_005688942.1 TIGRFAM: diguanylate cyclase; PFAM: response regulator receiver; GGDEF domain containing protein; KEGG: tpd:Teth39_0760 response regulator receiver modulated diguanylate cyclase; SMART: response regulator receiver; GGDEF domain containing protein YP_005688943.1 SMART: Ig domain protein group 2 domain protein; KEGG: cce:Ccel_1547 S-layer domain protein YP_005688944.1 KEGG: cce:Ccel_1874 hypothetical protein YP_005688945.1 KEGG: gka:GK1403 hypothetical protein YP_005688946.1 KEGG: ckr:CKR_1497 hypothetical protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_005688947.1 PFAM: peptidase M56 BlaR1; KEGG: dhd:Dhaf_3787 peptidase M56 BlaR1 YP_005688948.1 PFAM: Penicillinase repressor; KEGG: dhd:Dhaf_3788 transcriptional repressor, CopY family YP_005688949.1 PFAM: Urease accessory protein UreD; KEGG: tjr:TherJR_0611 urease accessory protein UreD YP_005688950.1 KEGG: hms:HMU03100 urease accessory protein UreG; TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K YP_005688951.1 PFAM: Urease accessory protein UreF; KEGG: hac:Hac_1536 hypothetical protein YP_005688952.1 KEGG: tjr:TherJR_0607 urease, alpha subunit; TIGRFAM: urease, alpha subunit; PFAM: amidohydrolase; Urease alpha-subunit domain-containing protein YP_005688953.1 TIGRFAM: urease, beta subunit; KEGG: hac:Hac_1532 urease subunit alpha; PFAM: Urease beta subunit YP_005688954.1 TIGRFAM: urease, gamma subunit; KEGG: fjo:Fjoh_4837 urease subunit gamma; PFAM: Urease gamma subunit region YP_005688955.1 TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; KEGG: pjd:Pjdr2_0561 UreA ABC transporter, ATP-binding protein UrtE; SMART: AAA ATPase YP_005688956.1 TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: pjd:Pjdr2_0560 UreA ABC transporter, ATP-binding protein UrtD; SMART: AAA ATPase YP_005688957.1 manually curated; TIGRFAM: urea ABC transporter, permease protein UrtC; KEGG: gka:GK1935 ABC transporter (permease); PFAM: inner-membrane translocator YP_005688958.1 manually curated; TIGRFAM: urea ABC transporter, permease protein UrtB; KEGG: gym:GYMC10_1634 UreA ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator YP_005688959.1 KEGG: gct:GC56T3_1585 UreA ABC transporter, UreA binding protein; TIGRFAM: urea ABC transporter, urea binding protein; PFAM: Extracellular ligand-binding receptor YP_005688960.1 KEGG: aoe:Clos_2472 two component AraC family transcriptional regulator; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn-helix, AraC domain YP_005688961.1 KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_005688962.1 KEGG: lic:LIC12058 histidine kinase response regulator hybrid protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein YP_005688963.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: tjr:TherJR_0863 copper amine oxidase domain protein YP_005688964.1 KEGG: fma:FMG_0224 putative zinc-binding lipoprotein YP_005688965.1 KEGG: dwi:Dwil_GK10283 GK10283 gene product from transcript GK10283-RA YP_005688966.1 KEGG: cce:Ccel_0509 hypothetical protein YP_005688967.1 KEGG: tva:TVAG_233770 ATP-dependent DNA helicase, RecQ family protein YP_005688968.1 PFAM: transposase mutator type; KEGG: tpd:Teth39_2032 transposase, mutator type YP_005688969.1 KEGG: tet:TTHERM_00136030 hypothetical protein YP_005688970.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: tjr:TherJR_0805 copper amine oxidase domain protein YP_005688971.1 manually curated; KEGG: fma:FMG_0224 putative zinc-binding lipoprotein YP_005688972.1 KEGG: cce:Ccel_0509 hypothetical protein YP_005688973.1 KEGG: tva:TVAG_233770 ATP-dependent DNA helicase, RecQ family protein YP_005688974.1 KEGG: tva:TVAG_233770 ATP-dependent DNA helicase, RecQ family protein YP_005688975.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: tjr:TherJR_0805 copper amine oxidase domain protein YP_005688976.1 KEGG: pfh:PFHG_00100 conserved hypothetical protein YP_005688977.1 KEGG: cce:Ccel_0508 hypothetical protein YP_005688978.1 PFAM: transposase IS4 family protein; KEGG: dsy:DSY3434 hypothetical protein YP_005688979.1 manually curated; KEGG: cce:Ccel_0509 hypothetical protein YP_005688980.1 manually curated; KEGG: pth:PTH_0170 hypothetical protein YP_005688981.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: tjr:TherJR_0863 copper amine oxidase domain protein YP_005688982.1 KEGG: mpe:MYPE6480 DNA topoisomerase IV subunit B YP_005688983.1 KEGG: dae:Dtox_1722 hypothetical protein YP_005688984.1 KEGG: tet:TTHERM_00352220 Peptidase family M1 containing protein YP_005688985.1 KEGG: cpy:Cphy_0624 endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; Dockerin type 1; SMART: glycoside hydrolase family 10 YP_005688986.1 manually curated; PFAM: Radical SAM domain protein; KEGG: cpy:Cphy_2083 biotin synthase; SMART: Elongator protein 3/MiaB/NifB YP_005688987.1 KEGG: dsy:DSY4189 hypothetical protein; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_005688988.1 KEGG: cce:Ccel_0923 ExsB family protein; manually curated; PFAM: PP-loop domain protein YP_005688989.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; manually curated; KEGG: dhd:Dhaf_1146 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase YP_005688990.1 KEGG: dhd:Dhaf_1145 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_005688991.1 manually curated; TIGRFAM: transcriptional regulator, Rrf2 family; KEGG: mta:Moth_1653 BadM/Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074 YP_005688992.1 TIGRFAM: homoserine O-succinyltransferase; KEGG: tjr:TherJR_2227 homoserine O-succinyltransferase; PFAM: homoserine O-succinyltransferase YP_005688993.1 KEGG: cce:Ccel_1713 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_005688994.1 KEGG: ckr:CKR_1387 hypothetical protein; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_005688995.1 KEGG: cce:Ccel_0746 copper-translocating P-type ATPase; TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase YP_005688996.1 PFAM: Heavy metal transport/detoxification protein; KEGG: cce:Ccel_0745 heavy metal transport/detoxification protein YP_005688997.1 KEGG: cce:Ccel_1716 hypothetical protein YP_005688998.1 KEGG: tjr:TherJR_1966 protein of unknown function DUF1113; manually curated; PFAM: protein of unknown function DUF1113 YP_005688999.1 PFAM: Hsp33 protein; KEGG: cce:Ccel_2900 HSP33 protein YP_005689000.1 KEGG: cce:Ccel_2901 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein YP_005689001.1 KEGG: apv:Apar_0739 methylated-DNA/protein-cysteinemethyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding YP_005689002.1 KEGG: cce:Ccel_2902 methyltransferase type 12; manually curated; PFAM: Methyltransferase type 11 YP_005689003.1 KEGG: cce:Ccel_2903 small acid-soluble spore protein beta YP_005689004.1 TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: cce:Ccel_2904 carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_005689005.1 PFAM: Peptidase M23; KEGG: cce:Ccel_2905 peptidase M23 YP_005689006.1 PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_2906 protein of unknown function DUF214 YP_005689007.1 TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; KEGG: cce:Ccel_2907 cell division ATP-binding protein FtsE; SMART: AAA ATPase YP_005689008.1 KEGG: cce:Ccel_2908 transcriptional regulator, CdaR YP_005689009.1 manually curated; PFAM: ABC transporter related; TOBE domain-containing protein; KEGG: cce:Ccel_2909 ABC transporter related; SMART: AAA ATPase YP_005689010.1 SMART: Semialdehyde dehydrogenase NAD - binding; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: tjr:TherJR_0346 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_005689011.1 TIGRFAM: acetylglutamate kinase; KEGG: cce:Ccel_2911 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_005689012.1 PFAM: type IV pilus assembly PilZ; KEGG: sbi:SORBI_06g005650 hypothetical protein YP_005689013.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; KEGG: cce:Ccel_2912 acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III YP_005689014.1 KEGG: cce:Ccel_2913 carbamoyl-phosphate synthase, small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I YP_005689015.1 KEGG: cce:Ccel_2914 carbamoyl-phosphate synthase, large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein YP_005689016.1 TIGRFAM: ornithine carbamoyltransferase; KEGG: cce:Ccel_2915 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain YP_005689017.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cce:Ccel_2916 GCN5-related N-acetyltransferase YP_005689018.1 PFAM: transposase IS4 family protein; KEGG: llo:LLO_1884 transposase (DDE domain) YP_005689019.1 PFAM: Dockerin type 1; KEGG: ecw:EcE24377A_1450 hypothetical protein YP_005689020.1 KEGG: dhd:Dhaf_0970 hypothetical protein YP_005689021.1 KEGG: dhd:Dhaf_0962 cell division membrane protein-like protein YP_005689022.1 KEGG: dsy:DSY4371 hypothetical protein; manually curated; PFAM: transcriptional regulator PadR family protein YP_005689023.1 PFAM: metallophosphoesterase; KEGG: cbe:Cbei_1777 metallophosphoesterase YP_005689024.1 KEGG: bcb:BCB4264_A2973 hypothetical protein YP_005689025.1 KEGG: shi:Shel_05720 D-alanyl-D-alanine carboxypeptidase; PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin YP_005689026.1 KEGG: tpd:Teth39_2032 transposase, mutator type; manually curated; PFAM: transposase mutator type YP_005689027.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pto:PTO0418 threonine synthase YP_005689028.1 KEGG: cpy:Cphy_0405 polysaccharide deacetylase; manually curated; PFAM: polysaccharide deacetylase YP_005689029.1 KEGG: hau:Haur_3129 amino acid adenylation domain-containing protein; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Thioesterase; major facilitator superfamily MFS_1 YP_005689030.1 PFAM: glycosyl transferase family 28; KEGG: ote:Oter_1867 glycosyl transferase family protein YP_005689031.1 PFAM: glycosyl transferase family 28; KEGG: mch:Mchl_5544 glycosyl transferase family 28 YP_005689032.1 manually curated; TIGRFAM: amino acid adenylation domain protein; KEGG: cyc:PCC7424_5756 amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding YP_005689033.1 PFAM: copper amine oxidase-like domain-containing protein; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: cce:Ccel_2335 copper amine oxidase domain protein YP_005689034.1 KEGG: cce:Ccel_2334 copper amine oxidase domain protein; manually curated; PFAM: copper amine oxidase-like domain-containing protein YP_005689035.1 KEGG: cce:Ccel_2336 hypothetical protein YP_005689036.1 KEGG: cce:Ccel_1656 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; S-layer domain-containing protein; SMART: cellulose binding type IV YP_005689037.1 PFAM: transposase IS200-family protein; KEGG: dhd:Dhaf_3832 transposase IS200-family protein YP_005689038.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: dsy:DSY1185 hypothetical protein YP_005689039.1 KEGG: hor:Hore_08350 hypothetical protein YP_005689040.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dae:Dtox_2626 TPR repeat-containing protein YP_005689041.1 manually curated; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: dae:Dtox_2624 histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_005689042.1 KEGG: dae:Dtox_2625 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_005689043.1 KEGG: cce:Ccel_0294 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase YP_005689044.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: ate:Athe_2050 Orn/Lys/Arg decarboxylase major region YP_005689045.1 PFAM: MgtC/SapB transporter; amino acid-binding ACT domain protein; KEGG: cce:Ccel_0293 MgtC/SapB transporter YP_005689046.1 KEGG: cce:Ccel_0292 stage II sporulation protein R; TIGRFAM: stage II sporulation protein R; PFAM: Sporulation stage II protein R YP_005689047.1 PFAM: transcriptional regulator PadR family protein; KEGG: ckr:CKR_1526 hypothetical protein YP_005689048.1 KEGG: ckr:CKR_1525 hypothetical protein YP_005689049.1 TIGRFAM: CTP synthase; KEGG: csc:Csac_2561 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I YP_005689050.1 KEGG: pcu:pc1361 hypothetical protein YP_005689051.1 SMART: Hedgehog/intein hint domain protein; KEGG: nme:NMB0655 hypothetical protein YP_005689052.1 TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; Peptidoglycan-binding domain 1 protein; KEGG: tjr:TherJR_0020 carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_005689053.1 PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0289 S-layer domain protein YP_005689054.1 PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0288 hypothetical protein YP_005689055.1 manually curated; KEGG: tpd:Teth39_0191 Zn-dependent hydrolase of the beta-lactamase fold-like protein YP_005689056.1 KEGG: ckr:CKR_0665 hypothetical protein; manually curated; PFAM: Abortive infection protein YP_005689057.1 TIGRFAM: arginyl-tRNA synthetase; KEGG: cce:Ccel_0285 arginyl-tRNA synthetase YP_005689058.1 PFAM: Domain of unknown function DUF1934; KEGG: cce:Ccel_0284 hypothetical protein YP_005689059.1 TIGRFAM: glutamate racemase; KEGG: csc:Csac_1373 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_005689060.1 TIGRFAM: D-alanine/D-alanine ligase; KEGG: cce:Ccel_0283 D-alanyl-alanine synthetase A; PFAM: D-alanine--D-alanine ligase domain protein YP_005689061.1 TIGRFAM: magnesium transporter; PFAM: MgtE integral membrane region; MgtE intracellular region; CBS domain containing protein; KEGG: cno:NT01CX_1586 magnesium transporter; SMART: CBS domain containing protein YP_005689063.1 PFAM: RDD domain containing protein; KEGG: emi:Emin_0170 RDD domain-containing protein YP_005689064.1 KEGG: cce:Ccel_0363 regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB YP_005689065.1 PFAM: Lipoprotein LpqB, GerMN domain; KEGG: cce:Ccel_0362 cytochrome b5 YP_005689066.1 TIGRFAM: deoxyribose-phosphate aldolase; KEGG: ton:TON_1608 deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_005689067.1 PFAM: protein of unknown function DUF458; KEGG: bpu:BPUM_1307 hypothetical protein YP_005689068.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cce:Ccel_0360 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_005689069.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Thioredoxin domain-containing protein; KEGG: chy:CHY_0560 thioredoxin/thioredoxin-disulfide reductase YP_005689070.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: cce:Ccel_1661 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_005689071.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: cce:Ccel_1660 cytochrome c biogenesis protein transmembrane region YP_005689072.1 KEGG: cce:Ccel_0358 hypothetical protein YP_005689073.1 KEGG: cce:Ccel_0357 hypothetical protein YP_005689074.1 KEGG: cce:Ccel_0356 hypothetical protein YP_005689075.1 KEGG: csc:Csac_1743 cell wall hydrolase, SleB; TIGRFAM: spore cortex-lytic enzyme; PFAM: cell wall hydrolase SleB; Peptidoglycan-binding domain 1 protein YP_005689076.1 KEGG: cce:Ccel_0355 hypothetical protein YP_005689077.1 KEGG: cce:Ccel_0354 RNA binding S1 domain protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold YP_005689078.1 KEGG: hor:Hore_22720 tagatose-6-phosphate kinase, phosphofructokinase I; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein YP_005689079.1 PFAM: extracellular solute-binding protein family 1; KEGG: mrb:Mrub_0284 extracellular solute-binding protein family 1 YP_005689080.1 KEGG: apo:Arcpr_1461 dihydroxy-acid dehydratase YP_005689081.1 KEGG: cce:Ccel_0352 putative UV damage endonuclease; TIGRFAM: UV-endonuclease UvdE; PFAM: UV-endonuclease UvdE YP_005689082.1 PFAM: Methyltransferase type 11; KEGG: cce:Ccel_1149 methyltransferase type 11 YP_005689083.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: hmo:HM1_1685 peptidoglycan binding domain 1, putative YP_005689084.1 PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; KEGG: cce:Ccel_0348 nucleotidyl transferase YP_005689085.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: cce:Ccel_0347 pseudouridine synthase, RluA family; SMART: RNA-binding S4 domain protein YP_005689086.1 KEGG: cce:Ccel_1232 carbohydrate binding family 6; PFAM: glycoside hydrolase family 10; Carbohydrate binding family 6; esterase; Dockerin type 1; SMART: glycoside hydrolase family 10; cellulose binding type IV YP_005689087.1 KEGG: gwc:GWCH70_0448 alkyl hydroperoxide reductase, F subunit; TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutaredoxin YP_005689088.1 TIGRFAM: peroxiredoxin; KEGG: cbe:Cbei_2135 peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_005689089.1 KEGG: smm:Smp_045610 rho GDP-dissociation inhibitor-related YP_005689090.1 KEGG: esi:Exig_2157 succinate dehydrogenase flavoprotein subunit YP_005689091.1 KEGG: oih:OB1316 hypothetical protein YP_005689092.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: cac:CA_C0039 DNA segregation ATP-ase FtsK/SpoIIIE YP_005689093.1 KEGG: cno:NT01CX_0211 putative S-layer protein (peptidoglycan anchored) YP_005689094.1 KEGG: isc:IscW_ISCW012825 hypothetical protein YP_005689095.1 KEGG: pic:PICST_29284 hypothetical protein YP_005689096.1 KEGG: mch:Mchl_4932 apolipoprotein A1/A4/E YP_005689097.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: ptm:GSPATT00039334001 hypothetical protein YP_005689098.1 KEGG: bcy:Bcer98_0786 cell wall anchor domain-containing protein YP_005689099.1 KEGG: gyc:GYMC61_3122 hypothetical protein YP_005689100.1 KEGG: dmo:Dmoj_GI24505 GI24505 gene product from transcript GI24505-RA YP_005689101.1 SMART: Hedgehog/intein hint domain protein; KEGG: ate:Athe_2571 transglutaminase domain protein YP_005689102.1 manually curated; KEGG: cbb:CLD_2459 hypothetical protein YP_005689103.1 KEGG: ssl:SS1G_06335 hypothetical protein YP_005689104.1 KEGG: ptm:GSPATT00003973001 hypothetical protein YP_005689105.1 KEGG: spo:SPBC29A10.04 mitotic cohesin complex subunit Psm1 (PMID 11069892) YP_005689106.1 manually curated; KEGG: rcp:RCAP_rcc02587 hypothetical protein YP_005689107.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: bcx:BCA_2283 transposase, IS110 family, OrfB YP_005689108.1 KEGG: mmz:MmarC7_1490 resolvase domain-containing protein YP_005689109.1 manually curated; KEGG: ecw:EcE24377A_0425 exonuclease subunit SbcD YP_005689110.1 KEGG: cce:Ccel_1666 transposase IS3/IS911 family protein; manually curated; PFAM: transposase IS3/IS911 family protein YP_005689111.1 PFAM: transposase IS4 family protein; KEGG: llo:LLO_1884 transposase (DDE domain) YP_005689112.1 KEGG: cbe:Cbei_3223 hypothetical protein YP_005689113.1 SMART: Hedgehog/intein hint domain protein; KEGG: rca:Rcas_1719 hypothetical protein YP_005689114.1 PFAM: Bifunctional DNA primase/polymerase ; Primase 1; KEGG: adg:Adeg_2001 bifunctional DNA primase/polymerase YP_005689115.1 KEGG: ote:Oter_1901 RND family efflux transporter MFP subunit YP_005689116.1 KEGG: ssl:SS1G_08969 hypothetical protein YP_005689117.1 KEGG: str:Sterm_0439 Hedgehog/intein hint domain protein; manually curated; SMART: Hedgehog/intein hint domain protein YP_005689118.1 KEGG: lcb:LCABL_12630 cell surface protein YP_005689119.1 KEGG: str:Sterm_0453 hypothetical protein YP_005689120.1 PFAM: Domain of unknown function DUF1910; Domain of unknown function DUF1911; KEGG: bcg:BCG9842_B2211 hypothetical protein YP_005689121.1 SMART: Hedgehog/intein hint domain protein; KEGG: bcg:BCG9842_B2210 putative cytoplasmic protein YP_005689122.1 manually curated; KEGG: cbb:CLD_2459 hypothetical protein YP_005689123.1 KEGG: tde:TDE1092 hypothetical protein YP_005689124.1 manually curated; PFAM: protein of unknown function DUF1557; KEGG: str:Sterm_0439 Hedgehog/intein hint domain protein; SMART: Hedgehog/intein hint domain protein YP_005689125.1 KEGG: bcz:BCZK2568 phosphoesterase-like protein YP_005689126.1 KEGG: dhd:Dhaf_3832 transposase IS200-family protein; manually curated; PFAM: transposase IS200-family protein YP_005689127.1 manually curated; KEGG: ere:EUBREC_1116 hypothetical protein YP_005689128.1 KEGG: aci:ACIAD0089 MviN family virulence factor YP_005689129.1 PFAM: Serine/threonine-protein kinase-like domain; KEGG: lba:Lebu_0998 serine/threonine protein kinase YP_005689130.1 KEGG: pth:PTH_0014 metal-dependent hydrolase of the TIM-barrel fold; manually curated; PFAM: amidohydrolase 2 YP_005689131.1 PFAM: Dockerin type 1; KEGG: dtu:Dtur_0172 coagulation factor 5/8 type domain protein YP_005689132.1 KEGG: cce:Ccel_1774 recombination helicase AddA; TIGRFAM: recombination helicase AddA; PFAM: UvrD/REP helicase YP_005689133.1 TIGRFAM: ATP-dependent nuclease subunit B; KEGG: cce:Ccel_1775 ATP-dependent nuclease subunit B YP_005689134.1 manually curated; KEGG: cbl:CLK_0205 hypothetical protein YP_005689135.1 manually curated; KEGG: ptm:GSPATT00020489001 hypothetical protein YP_005689136.1 PFAM: Integrase catalytic region; transposase IS3/IS911 family protein; KEGG: cce:Ccel_2178 transposase IS3/IS911 family protein YP_005689137.1 manually curated; KEGG: ptm:GSPATT00034298001 hypothetical protein YP_005689138.1 KEGG: lac:LBA0660 putative protease YP_005689139.1 KEGG: str:Sterm_0439 Hedgehog/intein hint domain protein; manually curated; SMART: Hedgehog/intein hint domain protein YP_005689140.1 manually curated; KEGG: tva:TVAG_431080 viral A-type inclusion protein YP_005689141.1 PFAM: protein of unknown function DUF324; KEGG: rrs:RoseRS_0362 hypothetical protein YP_005689142.1 manually curated; TIGRFAM: CRISPR-associated RAMP protein, SSO1426 family; KEGG: adg:Adeg_0985 protein of unknown function DUF324; PFAM: protein of unknown function DUF324 YP_005689143.1 manually curated; TIGRFAM: CRISPR-associated RAMP protein, SSO1426 family; KEGG: cyb:CYB_0590 CRISPR-associated Csm3 family protein; PFAM: protein of unknown function DUF324 YP_005689144.1 KEGG: mvu:Metvu_1289 protein of unknown function DUF499 YP_005689145.1 KEGG: ana:all1477 hypothetical protein YP_005689146.1 PFAM: protein of unknown function DUF324; KEGG: mfs:MFS40622_0582 CRISPR-associated RAMP protein, Csm3 family YP_005689147.1 KEGG: rrs:RoseRS_1438 hypothetical protein YP_005689148.1 manually curated; KEGG: paa:Paes_1983 conserved hypothetical cytosolic protein YP_005689149.1 KEGG: tex:Teth514_1838 CRISPR-associated TM1812 family protein; TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated protein DxTHG motif; PFAM: CRISPR-associated protein TM1812 YP_005689150.1 KEGG: nhl:Nhal_3073 Appr-1-p processing domain protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein YP_005689151.1 KEGG: cce:Ccel_3319 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma-H factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_005689153.1 KEGG: cce:Ccel_3320 RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding YP_005689154.1 PFAM: ribonuclease III; KEGG: cce:Ccel_3321 ribonuclease III YP_005689155.1 KEGG: tmt:Tmath_2129 GerA spore germination protein; manually curated; PFAM: GerA spore germination protein YP_005689156.1 KEGG: bbe:BBR47_16340 spore germination protein; TIGRFAM: spore germination protein; PFAM: Spore germination protein YP_005689157.1 KEGG: tjr:TherJR_2528 germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein YP_005689158.1 TIGRFAM: cysteinyl-tRNA synthetase; KEGG: cno:NT01CX_1093 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR YP_005689159.1 TIGRFAM: serine O-acetyltransferase; KEGG: cce:Ccel_3325 serine O-acetyltransferase YP_005689160.1 PFAM: membrane protein of unknown function; KEGG: cce:Ccel_2873 membrane protein of unknown function YP_005689161.1 PFAM: 8-oxoguanine DNA glycosylase domain-containing protein; HhH-GPD family protein; KEGG: cce:Ccel_3329 8-oxoguanine DNA glycosylase domain protein; SMART: HhH-GPD family protein YP_005689162.1 KEGG: cce:Ccel_3330 hypothetical protein YP_005689163.1 KEGG: cce:Ccel_3339 hypothetical protein YP_005689164.1 KEGG: cce:Ccel_3340 sporulation protein YtxC; TIGRFAM: sporulation protein YtxC; PFAM: Sporulation protein YtxC YP_005689165.1 KEGG: cce:Ccel_3341 hypothetical protein YP_005689166.1 TIGRFAM: amidohydrolase; KEGG: dtu:Dtur_0066 amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_005689167.1 PFAM: protein of unknown function DUF378; KEGG: cce:Ccel_3342 protein of unknown function DUF378 YP_005689168.1 KEGG: pyo:PY02600 hypothetical protein YP_005689169.1 PFAM: protein of unknown function DUF28; KEGG: cce:Ccel_0181 hypothetical protein YP_005689170.1 KEGG: cno:NT01CX_0224 sensory transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_005689171.1 PFAM: CoA-binding domain protein; KEGG: cce:Ccel_1777 CoA-binding domain protein YP_005689172.1 PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: cce:Ccel_0180 protein of unknown function UPF0029 YP_005689173.1 KEGG: cce:Ccel_2462 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region YP_005689174.1 PFAM: NUDIX hydrolase; KEGG: cce:Ccel_0179 NUDIX hydrolase YP_005689175.1 manually curated; TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; KEGG: cce:Ccel_0178 GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related YP_005689176.1 KEGG: csc:Csac_0616 hypothetical protein YP_005689177.1 KEGG: cce:Ccel_2007 UMUC domain protein DNA-repair protein; PFAM: UMUC domain protein DNA-repair protein YP_005689178.1 KEGG: cce:Ccel_0177 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_005689179.1 PFAM: peptidase U32; Peptidase U32, collagenase; KEGG: cce:Ccel_0176 peptidase U32 YP_005689180.1 PFAM: metalloenzyme domain protein; KEGG: cce:Ccel_0175 metalloenzyme domain protein YP_005689181.1 PFAM: protein of unknown function DUF710; KEGG: cce:Ccel_0174 protein of unknown function DUF710 YP_005689182.1 KEGG: csc:Csac_1076 glycoside hydrolase family protein; manually curated; PFAM: glycoside hydrolase family 48; Dockerin type 1 YP_005689183.1 KEGG: amt:Amet_1371 hypothetical protein YP_005689184.1 KEGG: cce:Ccel_0172 hypothetical protein YP_005689185.1 SMART: Ribosomal RNA adenine methylase transferase-like; TIGRFAM: dimethyladenosine transferase; KEGG: cce:Ccel_0171 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase YP_005689186.1 PFAM: 3D domain-containing protein; G5 domain protein; protein of unknown function DUF348; KEGG: cce:Ccel_0170 3D domain protein YP_005689187.1 KEGG: bfo:BRAFLDRAFT_86148 hypothetical protein YP_005689188.1 KEGG: cce:Ccel_0168 hydrolase, TatD family; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease YP_005689189.1 KEGG: tte:TTE0110 methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase class I (M); t-RNA-binding domain-containing protein YP_005689190.1 PFAM: Protein of unknown function DUF2600; KEGG: dsy:DSY2213 hypothetical protein YP_005689191.1 KEGG: cce:Ccel_0166 nucleoside recognition domain protein YP_005689192.1 PFAM: nucleoside recognition domain protein; KEGG: cce:Ccel_0165 nucleoside recognition domain protein YP_005689193.1 KEGG: cce:Ccel_0164 transcriptional regulator, AbrB family; TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain-containing protein YP_005689194.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cce:Ccel_0163 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase YP_005689195.1 PFAM: Methyltransferase type 11; KEGG: cce:Ccel_0162 methyltransferase type 11 YP_005689196.1 KEGG: cce:Ccel_0161 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_005689197.1 PFAM: PSP1 domain protein; KEGG: cce:Ccel_0160 PSP1 domain protein YP_005689198.1 SMART: AAA ATPase; KEGG: cce:Ccel_0159 DNA polymerase III, delta prime subunit YP_005689199.1 PFAM: protein of unknown function DUF327; KEGG: cce:Ccel_0158 protein of unknown function DUF327 YP_005689200.1 PFAM: thymidylate kinase; KEGG: clj:CLJU_c01390 thymidylate kinase YP_005689201.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: cce:Ccel_0155 Orn/Lys/Arg decarboxylase major region YP_005689202.1 KEGG: tps:THAPSDRAFT_37559 hypothetical protein YP_005689203.1 PFAM: Beta propeller domain; copper amine oxidase-like domain-containing protein; KEGG: pth:PTH_0613 secreted protein YP_005689204.1 KEGG: bcl:ABC0252 peptide ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_005689205.1 PFAM: protein of unknown function DUF214; KEGG: aoe:Clos_0981 hypothetical protein YP_005689206.1 KEGG: bcl:ABC0254 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_005689207.1 KEGG: bha:BH0289 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_005689208.1 PFAM: protein of unknown function DUF77; KEGG: cbt:CLH_1406 hypothetical protein YP_005689209.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CA_C1399 ABC transporter, permease component YP_005689210.1 KEGG: str:Sterm_2065 NMT1/THI5 like domain protein YP_005689211.1 KEGG: str:Sterm_2066 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_005689212.1 KEGG: bpu:BPUM_1560 glycoside hydrolase; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10 YP_005689213.1 TIGRFAM: RNA polymerase sigma-I factor; KEGG: cce:Ccel_1739 putative RNA polymerase sigma factor SigI YP_005689214.1 KEGG: cce:Ccel_3235 hypothetical protein YP_005689215.1 KEGG: shc:Shell_1389 translation initiation factor eIF-6 YP_005689216.1 PFAM: Trypanosome RHS; KEGG: cac:CA_C0668 hypothetical protein YP_005689217.1 KEGG: amt:Amet_4741 RND family efflux transporter MFP subunit YP_005689218.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_4742 binding-protein-dependent transport systems inner membrane component YP_005689219.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CA_C0665 ABC-type sugar transport system, permease component YP_005689220.1 PFAM: ATPase associated with various cellular activities AAA_3; KEGG: cce:Ccel_2538 ATPase associated with various cellular activities AAA_3 YP_005689221.1 PFAM: extracellular solute-binding protein family 1; KEGG: cac:CA_C0664 sugar-binding periplasmic protein YP_005689222.1 KEGG: cce:Ccel_0254 hypothetical protein YP_005689223.1 PFAM: Protein of unknown function DUF2089; KEGG: cce:Ccel_0253 hypothetical protein YP_005689224.1 KEGG: amt:Amet_0237 abortive infection protein, putative YP_005689225.1 KEGG: afn:Acfer_0737 hypothetical protein YP_005689226.1 PFAM: Carbohydrate binding family 6; Dockerin type 1; KEGG: pjd:Pjdr2_2552 ricin B lectin YP_005689227.1 KEGG: scl:sce1246 putative alpha-arabinofuranosidase; manually curated; PFAM: glycoside hydrolase family 43; alpha-L-arabinofuranosidase B; Dockerin type 1 YP_005689228.1 PFAM: alpha-L-arabinofuranosidase B; Dockerin type 1; glycoside hydrolase family 30; KEGG: scl:sce0966 hypothetical protein YP_005689229.1 KEGG: mta:Moth_0065 hypothetical protein YP_005689230.1 KEGG: smc:SmuNN2025_0438 hypothetical protein YP_005689231.1 KEGG: fsu:Fisuc_1158 metal-dependent phosphohydrolase HD sub domain protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_005689232.1 SMART: Toprim sub domain-containing protein; manually curated; KEGG: cce:Ccel_0244 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain-containing protein; Zinc finger C4-type, RecR YP_005689233.1 PFAM: Uncharacterised protein family UPF0133; KEGG: cce:Ccel_0243 hypothetical protein YP_005689234.1 TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; KEGG: cce:Ccel_0242 DNA polymerase III subunits gamma and tau; SMART: AAA ATPase YP_005689235.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: dae:Dtox_4298 copper amine oxidase domain protein YP_005689236.1 PFAM: glycoside hydrolase family 5; Dockerin type 1; type 3a cellulose-binding domain protein; KEGG: csc:Csac_1078 cellulose 1,4-beta-cellobiosidase YP_005689237.1 PFAM: Carbohydrate-binding CenC domain protein; KEGG: hvo:HVO_B0215 probable secreted glycosyl hydrolase YP_005689238.1 PFAM: amine oxidase; KEGG: xal:XALc_2703 probable protoporphyrinogen oxidase protein YP_005689239.1 KEGG: cac:CA_C0354 hypothetical protein YP_005689240.1 KEGG: cpy:Cphy_2889 hypothetical protein YP_005689241.1 KEGG: dhd:Dhaf_2536 hypothetical protein; manually curated; PFAM: GtrA family protein YP_005689242.1 PFAM: Methyltransferase type 11; KEGG: psl:Psta_1523 methyltransferase type 11 YP_005689243.1 PFAM: S-layer domain-containing protein; KEGG: gym:GYMC10_4794 legume lectin beta domain protein YP_005689244.1 KEGG: nfi:NFIA_003740 hybrid PKS/NRPS enzyme, putative YP_005689245.1 KEGG: ptm:GSPATT00028784001 hypothetical protein YP_005689246.1 KEGG: ccu:Ccur_03560 hypothetical protein YP_005689247.1 PFAM: Spore coat protein CotH; KEGG: amt:Amet_0190 spore coat protein CotH YP_005689248.1 KEGG: pfh:PFHG_04900 hypothetical protein YP_005689249.1 KEGG: cbt:CLH_1355 putative autoinducer prepeptide YP_005689250.1 KEGG: cce:Ccel_2792 hypothetical protein YP_005689251.1 PFAM: peptidase C26; KEGG: cce:Ccel_3356 peptidase C26 YP_005689252.1 KEGG: ddf:DEFDS_0429 anti-sigma factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS YP_005689254.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cce:Ccel_3357 rubredoxin-type Fe(Cys)4 protein YP_005689255.1 KEGG: cce:Ccel_3360 sporulation protein YyaC; TIGRFAM: sporulation protein YyaC; PFAM: protein of unknown function DUF1256 YP_005689256.1 TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation protein E; PAS fold domain protein; KEGG: cce:Ccel_3361 putative PAS/PAC sensor protein; SMART: protein phosphatase 2C domain protein YP_005689257.1 KEGG: cpf:CPF_2247 glycosy hydrolase family protein YP_005689258.1 PFAM: Propeptide PepSY amd peptidase M4; KEGG: tjr:TherJR_2662 S-layer domain protein YP_005689259.1 PFAM: metallophosphoesterase; KEGG: mma:MM_0540 hypothetical protein YP_005689260.1 KEGG: cbi:CLJ_B3043 hypothetical protein YP_005689261.1 KEGG: sti:Sthe_2206 type III restriction protein res subunit; PFAM: type III restriction protein res subunit; SMART: DEAD-like helicase YP_005689262.1 KEGG: cce:Ccel_3375 ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31 YP_005689263.1 TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; Rho termination factor domain protein; KEGG: cce:Ccel_3376 transcription termination factor Rho; SMART: Cold shock protein; AAA ATPase YP_005689265.1 KEGG: tjr:TherJR_2918 hypothetical protein YP_005689266.1 PFAM: Abortive infection protein; KEGG: amt:Amet_1042 abortive infection protein YP_005689267.1 KEGG: cce:Ccel_0636 hypothetical protein YP_005689268.1 KEGG: cce:Ccel_0637 hypothetical protein YP_005689269.1 KEGG: bta:518737 WD repeat domain 88 YP_005689270.1 KEGG: rpe:RPE_1469 major facilitator transporter YP_005689271.1 PFAM: acyltransferase 3; KEGG: cce:Ccel_2617 acyltransferase 3 YP_005689272.1 KEGG: cgr:CAGL0K10472g hypothetical protein YP_005689273.1 KEGG: ate:Athe_1855 pectate disaccharide-lyase YP_005689274.1 KEGG: cce:Ccel_2243 pectate lyase/Amb allergen; PFAM: Pectate lyase/Amb allergen; Dockerin type 1; SMART: Pectate lyase/Amb allergen; Parallel beta-helix repeat YP_005689275.1 PFAM: Cl- channel voltage-gated family protein; KEGG: cdf:CD0656 putative chloride ion channel protein YP_005689276.1 KEGG: cce:Ccel_3405 PP-loop domain protein; manually curated; PFAM: PP-loop domain protein YP_005689277.1 PFAM: Ig domain protein group 2 domain protein; KEGG: cce:Ccel_3406 Ig-like, group 2 YP_005689278.1 manually curated; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; KEGG: cce:Ccel_3407 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase YP_005689279.1 KEGG: pjd:Pjdr2_5284 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN YP_005689280.1 KEGG: cce:Ccel_0075 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18 YP_005689281.1 KEGG: cce:Ccel_0056 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n YP_005689282.1 KEGG: cce:Ccel_0055 ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like YP_005689283.1 KEGG: hya:HY04AAS1_1171 diguanylate cyclase with PAS/PAC sensor; PFAM: GGDEF domain containing protein; manually curated; TIGRFAM: diguanylate cyclase; SMART: GGDEF domain containing protein; GAF domain protein YP_005689284.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: dth:DICTH_1953 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_005689285.1 SMART: alpha amylase catalytic sub domain; manually curated; KEGG: cce:Ccel_0053 1,4-alpha-glucan branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; alpha amylase catalytic region; glycoside hydrolase family 13 domain protein YP_005689286.1 KEGG: bhy:BHWA1_01521 hypothetical protein YP_005689287.1 KEGG: chu:CHU_2399 hypothetical protein; PFAM: Carbohydrate binding family 6; Dockerin type 1; glycoside hydrolase family 5; SMART: Fibronectin type III domain protein YP_005689288.1 KEGG: cce:Ccel_1233 carbohydrate binding family 6; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV YP_005689289.1 KEGG: cce:Ccel_1232 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; esterase; SMART: cellulose binding type IV YP_005689290.1 KEGG: cce:Ccel_1656 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV; Parallel beta-helix repeat YP_005689291.1 KEGG: cce:Ccel_1231 carbohydrate binding family 6; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV YP_005689292.1 KEGG: cce:Ccel_1239 carbohydrate binding family 6; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; Carbohydrate binding family 6; Dockerin type 1; SMART: cellulose binding type IV YP_005689293.1 SMART: HNH nuclease; KEGG: fjo:Fjoh_3009 hypothetical protein YP_005689294.1 KEGG: bcu:BCAH820_1018 hypothetical protein YP_005689295.1 KEGG: mla:Mlab_0010 hypothetical protein; PFAM: transcription activator effector binding; regulatory protein MerR; SMART: transcription activator effector binding; regulatory protein MerR YP_005689296.1 PFAM: protein of unknown function DUF214; KEGG: aoe:Clos_2081 hypothetical protein YP_005689297.1 KEGG: ere:EUBREC_3078 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_005689298.1 KEGG: aoe:Clos_2083 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_005689299.1 manually curated; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: dhd:Dhaf_0521 two component transcriptional regulator, winged helix family; SMART: response regulator receiver YP_005689300.1 KEGG: nvi:100124286 similar to protease m1 zinc metalloprotease YP_005689301.1 KEGG: cpy:Cphy_3712 hypothetical protein YP_005689302.1 KEGG: tet:TTHERM_00283420 Cytochrome P450 family protein YP_005689303.1 KEGG: tva:TVAG_228510 hypothetical protein YP_005689304.1 KEGG: llo:LLO_1884 transposase (DDE domain) YP_005689305.1 manually curated; KEGG: bfr:BF2234 putative efflux pump component protein YP_005689306.1 manually curated; KEGG: eat:EAT1b_1173 hypothetical protein YP_005689307.1 TIGRFAM: GTP cyclohydrolase I; KEGG: tpd:Teth39_0319 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase YP_005689308.1 KEGG: cce:Ccel_0132 cyanophycin synthetase; TIGRFAM: cyanophycin synthetase; PFAM: Mur ligase middle domain protein; RimK domain protein ATP-grasp; cytoplasmic peptidoglycan synthetase domain protein YP_005689309.1 TIGRFAM: cyanophycinase; KEGG: swo:Swol_1351 cyanophycinase; PFAM: peptidase S51 dipeptidase E YP_005689310.1 KEGG: cce:Ccel_0130 hypothetical protein YP_005689311.1 KEGG: swo:Swol_1352 isoaspartyl dipeptidase; TIGRFAM: isoaspartyl dipeptidase; PFAM: amidohydrolase YP_005689312.1 manually curated; TIGRFAM: LexA repressor; KEGG: cac:CA_C1832 LexA repressor; PFAM: LexA DNA-binding domain protein YP_005689313.1 TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: cce:Ccel_0128 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_005689314.1 KEGG: cce:Ccel_0127 3-isopropylmalate dehydratase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain-containing protein YP_005689315.1 KEGG: cce:Ccel_0126 3-isopropylmalate dehydratase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; 3-isopropylmalate dehydratase; homoaconitate hydratase family protein; PFAM: aconitate hydratase domain-containing protein YP_005689316.1 KEGG: cce:Ccel_0125 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain YP_005689317.1 PFAM: Protein of unknown function DUF2179; KEGG: mem:Memar_1511 hypothetical protein YP_005689318.1 KEGG: cce:Ccel_0109 hypothetical protein YP_005689319.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: tjr:TherJR_2407 Mg2 transporter protein CorA family protein YP_005689320.1 PFAM: FlgN family protein; KEGG: cce:Ccel_0107 FlgN family protein YP_005689321.1 KEGG: cce:Ccel_0106 flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS YP_005689322.1 PFAM: flagellar hook-associated 2 domain-containing protein; flagellar hook-associated protein 2 domain-containing protein; KEGG: cce:Ccel_0105 flagellar hook-associated 2 domain protein YP_005689323.1 PFAM: flagellar protein FlaG protein; KEGG: cce:Ccel_0104 flagellar protein FlaG protein YP_005689324.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: tmt:Tmath_0714 NAD-dependent epimerase/dehydratase YP_005689325.1 TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase; KEGG: tmt:Tmath_0715 UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_005689326.1 KEGG: tmt:Tmath_0719 pseudaminic acid biosynthesis-associated protein PseG; TIGRFAM: pseudaminic acid biosynthesis-associated protein PseG; PFAM: Glycosyltransferase 28 domain YP_005689327.1 PFAM: LmbE family protein; KEGG: swo:Swol_0211 putative LmbE-like protein YP_005689328.1 KEGG: gfo:GFO_2018 methionyl-tRNA formyltransferase YP_005689329.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cac:CA_C2192 lactoylglutathione lyase YP_005689330.1 TIGRFAM: FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; KEGG: cac:CA_C3312 hypothetical protein YP_005689331.1 PFAM: phosphopantetheine-binding; KEGG: cac:CA_C3313 acyl carrier protein, ACP YP_005689332.1 TIGRFAM: pseudaminic acid biosynthesis N-acetyl transferase; KEGG: gfo:GFO_2021 GNAT family acetyltransferase YP_005689333.1 SMART: SAF domain protein; TIGRFAM: pseudaminic acid synthase; KEGG: cbi:CLJ_B2947 sialic acid synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein YP_005689334.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: tmt:Tmath_0716 acylneuraminate cytidylyltransferase YP_005689335.1 KEGG: chu:CHU_2762 methyltransferase; TIGRFAM: pseudaminic acid biosynthesis-associated methylase; PFAM: Methyltransferase type 11 YP_005689336.1 PFAM: polysaccharide biosynthesis protein CapD; KEGG: cbl:CLK_2110 exopolysaccharide biosynthesis protein YP_005689337.1 PFAM: protein of unknown function DUF115; KEGG: tjr:TherJR_2788 protein of unknown function DUF115 YP_005689338.1 KEGG: cbt:CLH_0788 hypothetical protein YP_005689339.1 PFAM: protein of unknown function DUF115; KEGG: aoe:Clos_2517 hypothetical protein YP_005689340.1 PFAM: flagellin domain protein; KEGG: cbt:CLH_0786 flagellin YP_005689341.1 PFAM: flagellin domain protein; KEGG: aoe:Clos_2518 flagellin domain-containing protein YP_005689342.1 PFAM: Aldehyde Dehydrogenase; KEGG: ckr:CKR_1943 hypothetical protein YP_005689343.1 KEGG: cce:Ccel_0099 carbon storage regulator, CsrA; TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator YP_005689344.1 PFAM: protein of unknown function DUF180; KEGG: cce:Ccel_0098 flagellar assembly protein FliW YP_005689345.1 KEGG: cce:Ccel_0097 hypothetical protein YP_005689346.1 KEGG: cce:Ccel_0096 flagellar hook-associated protein FlgL; TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein YP_005689347.1 KEGG: cce:Ccel_0095 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_005689348.1 KEGG: cce:Ccel_0094 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_005689349.1 PFAM: FlgN family protein; KEGG: cce:Ccel_0093 FlgN family protein YP_005689350.1 KEGG: cce:Ccel_0092 anti-sigma-28 factor FlgM family protein; TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein YP_005689351.1 KEGG: cce:Ccel_0091 regulatory protein, MerR YP_005689352.1 PFAM: phosphoribosyltransferase; KEGG: cce:Ccel_0090 phosphoribosyltransferase YP_005689353.1 TIGRFAM: helicase, RecD/TraA family; KEGG: tit:Thit_0465 helicase, RecD/TraA family; SMART: AAA ATPase YP_005689354.1 KEGG: cce:Ccel_0088 hypothetical protein YP_005689355.1 TIGRFAM: S-adenosylmethionine synthetase; KEGG: cce:Ccel_0087 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase YP_005689356.1 KEGG: amt:Amet_0908 thioesterase family protein YP_005689357.1 SMART: AAA ATPase; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: cce:Ccel_0085 ATP-dependent metalloprotease FtsH; PFAM: AAA ATPase central domain protein; peptidase M41 YP_005689358.1 TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: cce:Ccel_0084 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_005689359.1 KEGG: tte:TTE2395 ATPase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase YP_005689360.1 KEGG: cce:Ccel_0082 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein YP_005689361.1 KEGG: cce:Ccel_0081 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9-like YP_005689362.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cce:Ccel_0080 phosphoesterase RecJ domain protein YP_005689363.1 KEGG: cce:Ccel_0079 hypothetical protein YP_005689364.1 KEGG: cce:Ccel_0078 prephenate dehydratase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein YP_005689365.1 KEGG: tit:Thit_2339 hypothetical protein YP_005689366.1 PFAM: V-type ATPase 116 kDa subunit; KEGG: tmt:Tmath_2248 V-type ATPase 116 kDa subunit YP_005689367.1 PFAM: H+transporting two-sector ATPase C subunit; KEGG: cdl:CDR20291_2793 V-type ATP synthase subunit K YP_005689368.1 PFAM: H+transporting two-sector ATPase E subunit; KEGG: tpd:Teth39_2262 H+-transporting two-sector ATPase, E subunit YP_005689369.1 PFAM: H+transporting two-sector ATPase C (AC39) subunit; KEGG: cbk:CLL_A2863 V-type ATP synthase subunit C YP_005689370.1 PFAM: Vacuolar H+transporting two-sector ATPase F subunit; KEGG: cby:CLM_2990 V-type ATP synthase subunit F YP_005689371.1 PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: tit:Thit_2333 ATP synthase, A subunit YP_005689372.1 PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: cdl:CDR20291_2788 V-type ATP synthase subunit B YP_005689373.1 KEGG: cdl:CDR20291_2787 V-type ATP synthase subunit D; TIGRFAM: V-type ATPase, D subunit; PFAM: H+transporting two-sector ATPase D subunit YP_005689374.1 KEGG: ckr:CKR_2049 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_005689375.1 PFAM: Dockerin type 1; KEGG: cce:Ccel_0931 glycoside hydrolase family 10 YP_005689376.1 KEGG: amt:Amet_1169 hypothetical protein YP_005689377.1 KEGG: amt:Amet_1170 hypothetical protein YP_005689378.1 KEGG: pfh:PFHG_04416 conserved hypothetical protein YP_005689379.1 KEGG: clj:CLJU_c35120 hypothetical protein YP_005689380.1 KEGG: amt:Amet_3170 ATP-dependent metalloprotease FtsH; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_005689381.1 KEGG: hor:Hore_15700 hypothetical protein YP_005689382.1 KEGG: cpy:Cphy_0847 amino acid ABC transporter periplasmic protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_005689383.1 KEGG: ere:EUBREC_1489 amino acid ABC transporter, permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_005689384.1 KEGG: amt:Amet_1675 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_005689385.1 SMART: response regulator receiver; manually curated; KEGG: cbe:Cbei_4180 response regulator receiver modulated CheB methylesterase; PFAM: CheB methylesterase; response regulator receiver YP_005689386.1 PFAM: MCP methyltransferase CheR-type; KEGG: cbe:Cbei_4181 protein-glutamate O-methyltransferase; SMART: MCP methyltransferase CheR-type YP_005689387.1 KEGG: cbe:Cbei_4182 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_005689388.1 KEGG: cbe:Cbei_4183 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Hpt domain protein; P2 response regulator binding domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein YP_005689389.1 KEGG: cbe:Cbei_4184 putative CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_005689390.1 PFAM: integrase family protein; KEGG: cpy:Cphy_3451 integrase family protein YP_005689391.1 KEGG: cbe:Cbei_2860 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_005689392.1 PFAM: PEBP family protein; KEGG: mmo:MMOB0830 putative phospholipid binding protein YP_005689393.1 KEGG: tit:Thit_0803 hypothetical protein YP_005689394.1 KEGG: ate:Athe_0677 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_005689395.1 KEGG: tmt:Tmath_0840 hypothetical protein YP_005689396.1 KEGG: tit:Thit_0800 hypothetical protein YP_005689397.1 KEGG: aoe:Clos_0981 hypothetical protein YP_005689398.1 TIGRFAM: CRISPR-associated protein Cas2; KEGG: gyc:GYMC61_1189 CRISPR-associated protein Cas2 YP_005689399.1 KEGG: dtu:Dtur_0619 CRISPR-associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48 YP_005689400.1 KEGG: drm:Dred_0540 CRISPR-associated Cas4 family protein; manually curated; TIGRFAM: CRISPR-associated protein Cas4 YP_005689401.1 TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: sli:Slin_6018 CRISPR-associated helicase Cas3; SMART: helicase domain protein; DEAD-like helicase YP_005689402.1 KEGG: sli:Slin_6017 CRISPR-associated protein Cas5; TIGRFAM: CRISPR-associated protein Cas5; PFAM: CRISPR-associated protein, Cas5 YP_005689403.1 TIGRFAM: CRISPR-associated regulatory protein, DevR family; CRISPR-associated autoregulator DevR family; KEGG: sli:Slin_6016 CRISPR-associated autoregulator, DevR family YP_005689404.1 manually curated; KEGG: sli:Slin_6015 hypothetical protein YP_005689405.1 KEGG: tye:THEYE_A1087 CRISPR-associated protein Cas6; TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57 YP_005689406.1 KEGG: pjd:Pjdr2_4679 hypothetical protein YP_005689407.1 KEGG: cac:CA_C0501 undecaprenyl pyrophosphate phosphatase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA YP_005689408.1 KEGG: cpo:COPRO5265_0068 Na+-driven multidrug efflux pump; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_005689409.1 KEGG: nth:Nther_0635 hemerythrin-like metal-binding protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein YP_005689410.1 PFAM: CheC domain protein; KEGG: nth:Nther_0634 CheC domain protein YP_005689411.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cac:CA_C1665 amidohydrolase YP_005689412.1 PFAM: copper amine oxidase-like domain-containing protein; KEGG: bpf:BpOF4_12165 hypothetical protein YP_005689413.1 KEGG: cac:CA_C0859 putative anti-SigV factor YP_005689414.1 PFAM: FMN-binding domain protein; KEGG: dhd:Dhaf_1503 hypothetical protein YP_005689415.1 PFAM: protein of unknown function DUF218; KEGG: hmo:HM1_1492 hypothetical protein YP_005689416.1 PFAM: protein of unknown function DUF163; KEGG: cce:Ccel_3387 rRNA large subunit methyltransferase YP_005689417.1 KEGG: cce:Ccel_3388 beta-lactamase domain protein YP_005689418.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: cce:Ccel_3389 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_005689419.1 PFAM: Protein of unknown function YycH; KEGG: cce:Ccel_3390 hypothetical protein YP_005689420.1 KEGG: cce:Ccel_3391 hypothetical protein YP_005689421.1 KEGG: cce:Ccel_3392 hypothetical protein YP_005689422.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: cce:Ccel_3393 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_005689423.1 KEGG: cce:Ccel_3394 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_005689424.1 KEGG: mga:MGA_0553 hypothetical protein YP_005689425.1 KEGG: str:Sterm_2480 putative transcriptional regulator, TetR family YP_005689426.1 PFAM: polysaccharide biosynthesis protein CapD; KEGG: amt:Amet_0277 polysaccharide biosynthesis protein CapD YP_005689427.1 PFAM: polysaccharide biosynthesis protein; KEGG: fsu:Fisuc_2672 polysaccharide biosynthesis protein YP_005689428.1 PFAM: glycosyl transferase group 1; KEGG: tkm:TK90_1546 glycosyl transferase group 1 YP_005689429.1 KEGG: erg:ERGA_CDS_01410 ABC transporter permease YP_005689430.1 PFAM: glycosyl transferase group 1; KEGG: pmo:Pmob_1293 glycosyl transferase group 1 YP_005689431.1 PFAM: glycosyl transferase group 1; KEGG: bca:BCE_5391 glycosyl transferase, group 1 family protein YP_005689432.1 KEGG: ele:Elen_1917 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_005689433.1 PFAM: glycosyl transferase family 2; KEGG: apr:Apre_0245 glycosyl transferase family 2 YP_005689434.1 KEGG: pth:PTH_1099 hypothetical protein YP_005689435.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hya:HY04AAS1_0683 GCN5-related N-acetyltransferase YP_005689436.1 KEGG: drm:Dred_3047 sugar transferase; PFAM: sugar transferase YP_005689437.1 KEGG: aco:Amico_1716 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_005689438.1 KEGG: tit:Thit_0635 O-antigen polymerase; PFAM: O-antigen polymerase; Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat YP_005689439.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: amt:Amet_0192 lipopolysaccharide biosynthesis protein YP_005689440.1 PFAM: Ig domain protein; S-layer domain-containing protein; KEGG: cce:Ccel_3398 hypothetical protein YP_005689441.1 KEGG: csc:Csac_2334 hypothetical protein YP_005689442.1 PFAM: cell wall hydrolase SleB; KEGG: cno:NT01CX_1338 cell wall hydrolase; cortex lytic enzyme, putative YP_005689443.1 KEGG: cbh:CLC_2819 hypothetical protein YP_005689444.1 KEGG: cce:Ccel_1780 putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; SMART: CBS domain containing protein YP_005689445.1 PFAM: Ig domain protein group 1 domain protein; KEGG: alv:Alvin_3300 lipase, class 2 YP_005689446.1 TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: cce:Ccel_3478 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_005689447.1 TIGRFAM: L-aspartate oxidase; KEGG: cce:Ccel_3479 L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_005689448.1 TIGRFAM: quinolinate synthetase complex, A subunit; KEGG: cce:Ccel_3480 quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A YP_005689449.1 KEGG: eel:EUBELI_00783 hypothetical protein YP_005689450.1 KEGG: cce:Ccel_0955 accessory gene regulator B; PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B YP_005689451.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cce:Ccel_1803 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region YP_005689452.1 PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; Dockerin type 1; KEGG: cce:Ccel_1648 glycoside hydrolase family 9 YP_005689453.1 SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA gyrase, A subunit; KEGG: cce:Ccel_3482 DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_005689454.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cce:Ccel_3483 ParB-like partition protein; SMART: ParB domain protein nuclease YP_005689455.1 KEGG: cce:Ccel_3484 methyltransferase GidB; TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein YP_005689456.1 KEGG: cce:Ccel_3485 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A YP_005689457.1 KEGG: cce:Ccel_3486 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related YP_005689458.1 KEGG: cce:Ccel_3487 single-stranded nucleic acid binding R3H domain protein; PFAM: single-stranded nucleic acid binding R3H domain-containing protein; SMART: single-stranded nucleic acid binding R3H domain-containing protein; KH domain protein YP_005689459.1 KEGG: cce:Ccel_3488 60 kDa inner membrane insertion protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; PFAM: 60 kDa inner membrane insertion protein YP_005689460.1 PFAM: protein of unknown function DUF37; KEGG: cce:Ccel_3489 protein of unknown function DUF37 YP_005689461.1 KEGG: cce:Ccel_3490 ribonuclease P; TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein YP_005689462.1 manually curated; TIGRFAM: ribosomal protein L34; KEGG: cce:Ccel_3491 50S ribosomal protein L34; PFAM: ribosomal protein L34