-- dump date 20140619_045133 -- class Genbank::CDS -- table cds_note -- id note YP_003820267.1 TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; KEGG: cpy:Cphy_0001 chromosomal replication initiator protein DnaA; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase YP_003820268.1 SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; KEGG: ere:EUBREC_0002 DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain YP_003820269.1 KEGG: cpy:Cphy_0003 RNA-binding S4 domain-containing protein YP_003820270.1 KEGG: eel:EUBELI_00004 DNA replication and repair protein RecF; TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein YP_003820271.1 SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; TIGRFAM: DNA gyrase, B subunit; KEGG: cpy:Cphy_0005 DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA gyrase subunit B domain protein YP_003820272.1 SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA gyrase, A subunit; KEGG: cpy:Cphy_0006 DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_003820273.1 KEGG: cdf:CD3083 transcription antiterminator; PFAM: PRD domain protein; M trans-acting positive regulator; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 YP_003820274.1 PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: lmy:LM5923_0949 hypothetical protein YP_003820275.1 KEGG: ppe:PEPE_0579 phosphotransferase system cellobiose-specific component IIC; PFAM: phosphotransferase system EIIC YP_003820276.1 PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: cdl:CDR20291_2919 PTS system, IIa component YP_003820277.1 PFAM: glycoside hydrolase family 1; KEGG: cdl:CDR20291_2918 6-phospho-beta-glucosidase YP_003820278.1 KEGG: eel:EUBELI_20516 phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr YP_003820279.1 PFAM: protein of unknown function UPF0074; KEGG: ele:Elen_0624 transcriptional regulator, BadM/Rrf2 family YP_003820280.1 KEGG: eel:EUBELI_00009 fumarate hydratase; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region YP_003820281.1 KEGG: eel:EUBELI_00010 fumarate hydratase; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region YP_003820282.1 KEGG: cpy:Cphy_0233 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_003820283.1 KEGG: eel:EUBELI_00960 hypothetical protein YP_003820284.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: ere:EUBREC_3277 arginine/lysine/ornithine decarboxylase YP_003820285.1 KEGG: ere:EUBREC_3276 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region YP_003820286.1 PFAM: inner-membrane translocator; KEGG: clo:HMPREF0868_0027 amino acid or sugar ABC transport system, permease protein YP_003820287.1 KEGG: clo:HMPREF0868_0026 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003820288.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: gtn:GTNG_1813 D-ribose-binding periplasmic protein YP_003820289.1 KEGG: cpy:Cphy_3280 ABC-type sugar transport system ATPase component-like protein YP_003820290.1 KEGG: cpy:Cphy_3281 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003820291.1 KEGG: cpy:Cphy_3282 two component AraC family transcriptional regulator; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003820292.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: cpy:Cphy_3913 DNA polymerase III, delta prime subunit YP_003820293.1 PFAM: PSP1 domain protein; KEGG: cpy:Cphy_3912 PSP1 domain-containing protein YP_003820294.1 PFAM: Methyltransferase type 11; KEGG: cpy:Cphy_3911 methyltransferase type 11 YP_003820295.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cpy:Cphy_3910 uroporphyrin-III C/tetrapyrrole methyltransferase YP_003820296.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: ere:EUBREC_3140 3-oxoacyl-[acyl-carrier-protein] synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_003820297.1 KEGG: ere:EUBREC_3148 acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding YP_003820298.1 KEGG: ere:EUBREC_3147 2-nitropropane dioxygenase-like dioxygenase; TIGRFAM: enoyl-(acyl-carrier-protein) reductase II; PFAM: 2-nitropropane dioxygenase NPD YP_003820299.1 KEGG: cpy:Cphy_0516 malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase YP_003820300.1 KEGG: ere:EUBREC_3145 3-oxoacyl-[acyl-carrier-protein] reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR YP_003820301.1 KEGG: ere:EUBREC_3144 FabF; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase YP_003820302.1 KEGG: pvi:Cvib_1602 biotin carboxyl carrier protein; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein YP_003820303.1 KEGG: cno:NT01CX_0928 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_003820304.1 KEGG: cpy:Cphy_0521 acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein YP_003820305.1 KEGG: ere:EUBREC_3141 acetyl-coA carboxylase carboxyl transferase subunit beta/alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region YP_003820306.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: cpy:Cphy_3113 2-nitropropane dioxygenase NPD YP_003820307.1 KEGG: apr:Apre_0262 uracil-xanthine permease; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease YP_003820308.1 PFAM: nucleoside recognition domain protein; KEGG: cpy:Cphy_3908 spore maturation protein YP_003820309.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: str:Sterm_0944 CMP/dCMP deaminase zinc-binding protein YP_003820310.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: vpr:Vpar_1798 permease for cytosine/purines uracil thiamine allantoin YP_003820311.1 KEGG: vpr:Vpar_1799 hypothetical protein YP_003820312.1 KEGG: str:Sterm_0942 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SMART: regulatory protein GntR HTH YP_003820313.1 KEGG: cbe:Cbei_4096 GntR domain-containing protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003820314.1 PFAM: extracellular solute-binding protein family 1; KEGG: smd:Smed_0186 extracellular solute-binding protein YP_003820315.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsk:RSKD131_3903 binding-protein-dependent transport systems inner membrane component precursor YP_003820316.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3672 ABC sugar transporter, inner membrane subunit YP_003820317.1 PFAM: Transketolase domain protein; KEGG: tpd:Teth39_0491 transketolase domain-containing protein YP_003820318.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: bhy:BHWA1_00092 transketolase, pyridine binding subunit YP_003820319.1 KEGG: cac:CAC3497 hypothetical protein YP_003820320.1 KEGG: eel:EUBELI_00054 hypothetical protein YP_003820321.1 TIGRFAM: MTA/SAH nucleosidase; KEGG: cpy:Cphy_3729 adenosylhomocysteine nucleosidase; PFAM: purine or other phosphorylase family 1 YP_003820322.1 KEGG: cpy:Cphy_0418 hypothetical protein YP_003820323.1 KEGG: cpy:Cphy_0419 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI) YP_003820324.1 KEGG: bha:BH3611 hypothetical protein YP_003820325.1 PFAM: extracellular solute-binding protein family 1; KEGG: pjd:Pjdr2_1679 extracellular solute-binding protein family 1 YP_003820326.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: str:Sterm_0718 binding-protein-dependent transport systems inner membrane component YP_003820327.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: str:Sterm_0717 binding-protein-dependent transport systems inner membrane component YP_003820328.1 PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 42 domain 5 loop region; KEGG: str:Sterm_0715 beta-galactosidase YP_003820329.1 PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: tit:Thit_0754 glycoside hydrolase family 65 central catalytic YP_003820330.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cdf:CD1523 hypothetical protein YP_003820331.1 KEGG: cpy:Cphy_1021 beta-phosphoglucomutase; TIGRFAM: beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003820332.1 KEGG: str:Sterm_0714 transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003820333.1 KEGG: cpy:Cphy_0044 hypothetical protein YP_003820334.1 KEGG: cpy:Cphy_0049 hypothetical protein YP_003820335.1 KEGG: cth:Cthe_2165 hypothetical protein; TIGRFAM: sporulation protein YyaC; PFAM: protein of unknown function DUF1256 YP_003820336.1 KEGG: eel:EUBELI_01972 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM YP_003820337.1 KEGG: eel:EUBELI_01971 hypothetical protein YP_003820338.1 KEGG: cpy:Cphy_0014 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region YP_003820339.1 KEGG: cac:CAC2613 NagC/XylR family transcriptional regulators; TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein YP_003820340.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: vpr:Vpar_0099 beta-lactamase domain protein YP_003820341.1 PFAM: protein of unknown function DUF542 ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: afn:Acfer_0684 protein of unknown function DUF542 ScdA domain protein YP_003820342.1 KEGG: aoe:Clos_2178 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp YP_003820343.1 KEGG: aldose 1-epimerase; PFAM: Aldose 1-epimerase YP_003820345.1 KEGG: msu:MS0062 L-arabinose transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003820346.1 PFAM: inner-membrane translocator; KEGG: hor:Hore_22690 monosaccharide-transporting ATPase YP_003820347.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cbe:Cbei_1380 periplasmic binding protein/LacI transcriptional regulator YP_003820348.1 KEGG: dhd:Dhaf_2638 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003820349.1 PFAM: TPR repeat-containing protein; KEGG: gym:GYMC10_4394 tetratricopeptide TPR_2 repeat protein YP_003820351.1 KEGG: cpy:Cphy_2864 manganese-dependent inorganic pyrophosphatase; PFAM: DRTGG domain protein; CBS domain containing protein; DHHA2 domain protein YP_003820352.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: ere:EUBREC_1480 nitrilotriacetate monooxygenase component B YP_003820353.1 PFAM: shikimate kinase; KEGG: ere:EUBREC_0460 shikimate kinase YP_003820354.1 KEGG: cbk:CLL_A2996 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003820355.1 KEGG: pca:Pcar_2967 methyl-accepting chemotaxis protein (MCP); PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003820356.1 TIGRFAM: PTS system, glucose-like IIB subunint; KEGG: aat:D11S_1163 pts system maltose- and glucose-specific eiicb component; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003820357.1 KEGG: str:Sterm_2436 N-acylglucosamine-6-phosphate 2-epimerase; PFAM: N-acetylmannosamine-6-phosphate epimerase YP_003820358.1 PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: lin:lin2927 hypothetical protein YP_003820360.1 KEGG: amt:Amet_1260 transcriptional regulator IclR-like protein; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR YP_003820361.1 KEGG: bfo:BRAFLDRAFT_95076 hypothetical protein YP_003820362.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_0485 binding-protein-dependent transport systems inner membrane component YP_003820363.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_0486 binding-protein-dependent transport systems inner membrane component YP_003820364.1 KEGG: cpy:Cphy_0487 extracellular solute-binding protein YP_003820365.1 KEGG: mmp:MMP0529 sulfate transporter family protein YP_003820366.1 KEGG: cpc:Cpar_1339 zinc transporter ZupT YP_003820367.1 KEGG: pmu:PM1763 hypothetical protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_003820368.1 KEGG: fpl:Ferp_2490 Na+/solute symporter YP_003820369.1 KEGG: cpb:Cphamn1_1120 Na+/solute symporter YP_003820370.1 KEGG: sco:SCO3500 hypothetical protein YP_003820371.1 PFAM: Heparinase II/III family protein; KEGG: cpy:Cphy_0489 heparinase II/III family protein YP_003820372.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gfo:GFO_1160 short-chain dehydrogenase/reductase family protein YP_003820373.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: amt:Amet_3782 cupin 2 domain-containing protein YP_003820374.1 PFAM: aminoglycoside 3-N-acetyltransferase; KEGG: eel:EUBELI_20580 aminoglycoside N3-acetyltransferase YP_003820375.1 PFAM: protein of unknown function DUF988; KEGG: eel:EUBELI_01901 hypothetical protein YP_003820376.1 KEGG: msl:Msil_2716 glycosyl transferase group 1 YP_003820377.1 KEGG: eel:EUBELI_01919 UDP-N-acetylmuramate--alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein YP_003820378.1 TIGRFAM: primosome, DnaD subunit; KEGG: eel:EUBELI_01920 hypothetical protein YP_003820379.1 KEGG: ere:EUBREC_0448 hypothetical protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase YP_003820380.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpy:Cphy_2817 peptidase S8/S53 subtilisin kexin sedolisin YP_003820381.1 TIGRFAM: ribose-phosphate pyrophosphokinase; KEGG: cpy:Cphy_0104 phosphoribosylpyrophosphate synthetase; PFAM: phosphoribosyltransferase YP_003820382.1 KEGG: cpr:CPR_0388 branched-chain amino acid transport system II carrier protein; TIGRFAM: branched-chain amino acid transport system II carrier protein; PFAM: branched-chain amino acid transport system II carrier protein YP_003820383.1 KEGG: cpy:Cphy_0103 hypothetical protein YP_003820384.1 PFAM: metallophosphoesterase; KEGG: cpy:Cphy_0102 metallophosphoesterase YP_003820385.1 KEGG: cpy:Cphy_0095 asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type YP_003820386.1 KEGG: eel:EUBELI_01918 glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein YP_003820387.1 PFAM: Nucleotidyl transferase; KEGG: eel:EUBELI_01917 glucose-1-phosphate adenylyltransferase YP_003820388.1 PFAM: SpoVG family protein; KEGG: cpy:Cphy_0109 SpoVG family protein YP_003820389.1 KEGG: cpy:Cphy_2659 diaminopimelate dehydrogenase; TIGRFAM: diaminopimelate dehydrogenase YP_003820390.1 KEGG: ere:EUBREC_0207 hypothetical protein YP_003820391.1 PFAM: aminoglycoside phosphotransferase; KEGG: cpy:Cphy_3927 Mn2+-dependent serine/threonine protein kinase YP_003820392.1 TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; KEGG: eel:EUBELI_02045 glycoside hydrolase family 13 candidate 1,4-A-glucan branching enzyme; N-terminal CBM48 module; SMART: alpha amylase catalytic sub domain YP_003820393.1 KEGG: eel:EUBELI_01193 glycoside hydrolase family 13 candidate A-glycosidase (amylase-related); PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003820394.1 KEGG: eel:EUBELI_01989 hypothetical protein YP_003820395.1 KEGG: cdl:CDR20291_2966 ArsR-family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003820396.1 KEGG: ere:EUBREC_0040 hypothetical protein; manually curated; PFAM: peptidase A24A prepilin type IV YP_003820397.1 KEGG: eel:EUBELI_01987 hypothetical protein YP_003820398.1 PFAM: type II secretion system protein E; KEGG: cth:Cthe_1339 type II secretion system protein E YP_003820399.1 PFAM: Type II secretion system F domain; KEGG: cpy:Cphy_0033 Flp pilus assembly protein TadB-like protein YP_003820400.1 KEGG: ere:EUBREC_0044 hypothetical protein YP_003820401.1 KEGG: ere:EUBREC_0045 hypothetical protein YP_003820402.1 KEGG: eel:EUBELI_01982 hypothetical protein YP_003820403.1 KEGG: eel:EUBELI_01981 hypothetical protein YP_003820404.1 KEGG: cce:Ccel_0510 peptidase A24A prepilin type IV YP_003820405.1 KEGG: pen:PSEEN3130 hypothetical protein YP_003820406.1 KEGG: eel:EUBELI_01978 hypothetical protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein YP_003820407.1 KEGG: cpy:Cphy_0441 hypothetical protein YP_003820408.1 PFAM: ABC transporter; KEGG: fsu:Fisuc_1194 ABC transporter YP_003820409.1 KEGG: cpy:Cphy_0439 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003820410.1 PFAM: periplasmic solute binding protein; KEGG: shi:Shel_18230 ABC-type metal ion transport system, periplasmic component/surface adhesin YP_003820411.1 KEGG: shi:Shel_18220 hypothetical protein YP_003820412.1 PFAM: ferric-uptake regulator; KEGG: fsu:Fisuc_1190 ferric uptake regulator, Fur family YP_003820413.1 PFAM: Rhomboid family protein; KEGG: ere:EUBREC_0051 hypothetical protein YP_003820414.1 PFAM: histidine triad (HIT) protein; KEGG: ere:EUBREC_0053 cell cycle regulation histidine triad (HIT) protein YP_003820415.1 KEGG: ctc:CTC00665 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein YP_003820416.1 TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; KEGG: cpy:Cphy_3727 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain YP_003820417.1 KEGG: abu:Abu_0826 hypothetical protein YP_003820418.1 PFAM: arsenate reductase and related; KEGG: ele:Elen_2504 arsenate reductase and related YP_003820419.1 KEGG: cpy:Cphy_3907 nucleoside recognition domain-containing protein YP_003820420.1 KEGG: eel:EUBELI_00035 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003820421.1 PFAM: Lipoprotein LpqB, GerMN domain; KEGG: cdl:CDR20291_3529 hypothetical protein YP_003820422.1 PFAM: protein of unknown function DUF885; KEGG: cpy:Cphy_3852 hypothetical protein YP_003820423.1 KEGG: cpy:Cphy_0025 methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase class I (M); t-RNA-binding domain protein YP_003820424.1 KEGG: ere:EUBREC_1055 hypothetical protein YP_003820425.1 KEGG: cpy:Cphy_3900 TatD family hydrolase; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease YP_003820426.1 SMART: Ribosomal RNA adenine methylase transferase-like; TIGRFAM: dimethyladenosine transferase; KEGG: cpy:Cphy_3899 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase YP_003820427.1 PFAM: regulatory protein TetR; KEGG: cpy:Cphy_0610 TetR family transcriptional regulator YP_003820429.1 PFAM: 67 kDa myosin-cross-reactive antigen family protein; KEGG: cbt:CLH_2556 myosin-cross-reactive antigen YP_003820430.1 PFAM: extracellular solute-binding protein family 5; KEGG: cpy:Cphy_2000 extracellular solute-binding protein YP_003820431.1 PFAM: conserved hypothetical protein; KEGG: fsu:Fisuc_3075 hypothetical protein YP_003820432.1 PFAM: histidine triad (HIT) protein; KEGG: cpy:Cphy_0406 histidine triad (HIT) protein YP_003820433.1 KEGG: tit:Thit_0220 hemerythrin-like metal-binding protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein YP_003820434.1 KEGG: gsu:GSU2603 30S ribosomal protein S1 YP_003820435.1 KEGG: ere:EUBREC_2927 glucosamine-6-phosphate deaminase; TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase YP_003820436.1 KEGG: cpy:Cphy_3896 hypothetical protein YP_003820437.1 KEGG: cpy:Cphy_3894 anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein YP_003820438.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: ere:EUBREC_0302 cytidine and deoxycytidylate deaminase family protein YP_003820439.1 PFAM: phosphofructokinase; KEGG: ere:EUBREC_0327 6-phosphofructokinase YP_003820440.1 TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: ATPase AAA; KEGG: ere:EUBREC_0328 DNA polymerase III, subunits gamma and tau; SMART: AAA ATPase YP_003820441.1 PFAM: conserved hypothetical protein; KEGG: ere:EUBREC_0329 uncharacterized conserved protein, YbaB family YP_003820442.1 TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; KEGG: eel:EUBELI_02016 recombination protein RecR; SMART: Toprim sub domain protein YP_003820443.1 KEGG: ere:EUBREC_0026 hypothetical protein YP_003820444.1 KEGG: ere:EUBREC_1435 hypothetical protein; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_003820445.1 PFAM: Colicin V production protein; KEGG: cpy:Cphy_0053 hypothetical protein YP_003820446.1 PFAM: integrase family protein; KEGG: cpy:Cphy_3145 integrase family protein YP_003820447.1 PFAM: Viral replication-associated protein; KEGG: ehi:EHI_168860 hypothetical protein YP_003820448.1 KEGG: clo:HMPREF0868_1213 FtsK/SpoIIIE family protein YP_003820449.1 KEGG: hmg:100209230 similar to Na,K-ATPase alpha subunit YP_003820450.1 KEGG: efa:EF3224 hypothetical protein YP_003820451.1 KEGG: mja:MJECS02 hypothetical protein YP_003820452.1 KEGG: tva:TVAG_030630 viral A-type inclusion protein YP_003820453.1 KEGG: cth:Cthe_1154 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003820454.1 PFAM: cell wall binding repeat-containing protein; KEGG: cbt:CLH_2143 cell wall binding repeat domain protein YP_003820455.1 KEGG: shi:Shel_22530 hypothetical protein YP_003820456.1 PFAM: cell wall binding repeat-containing protein; KEGG: snt:SPT_0163 pneumococcal surface protein A YP_003820457.1 KEGG: ecb:100061413 hypothetical protein LOC100061413 YP_003820458.1 KEGG: pyo:PY01084 hypothetical protein YP_003820459.1 KEGG: sun:SUN_0732 hypothetical protein YP_003820460.1 KEGG: cbe:Cbei_3256 hypothetical protein YP_003820462.1 KEGG: nph:NP3864A helicase YP_003820463.1 KEGG: tme:Tmel_1472 recombination and repair protein RecT YP_003820464.1 manually curated; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; KEGG: btl:BALH_3669 GntR family transcriptional regulator; SMART: regulatory protein GntR HTH YP_003820465.1 KEGG: cbe:Cbei_4914 PTS system mannose/fructose/sorbose family IIA subunit; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIA subunit; PFAM: PTS system fructose subfamily IIA component YP_003820466.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; KEGG: efa:EF0019 PTS system, IIB component; PFAM: PTS system sorbose subfamily IIB component YP_003820467.1 PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: lba:Lebu_2294 PTS system, mannose/fructose/sorbose family, IIC subunit YP_003820468.1 KEGG: lsg:lse_0680 PTS system, mannose/fructose/sorbose family, IID component; TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component YP_003820469.1 KEGG: bcl:ABC0492 hypothetical protein YP_003820470.1 KEGG: bha:BH3324 glucose-1-phosphate thymidylyltransferase YP_003820471.1 PFAM: LmbE family protein; KEGG: caa:Caka_2010 LmbE family protein YP_003820472.1 KEGG: cbe:Cbei_0275 iron dependent repressor; PFAM: iron dependent repressor; SMART: iron dependent repressor YP_003820473.1 KEGG: mmy:MSC_0463 DNA repair protein RecO YP_003820474.1 KEGG: cbe:Cbei_0276 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003820475.1 KEGG: aoe:Clos_2351 cell division membrane protein-like protein YP_003820476.1 PFAM: transcriptional regulator PadR family protein; KEGG: dsy:DSY4371 hypothetical protein YP_003820477.1 PFAM: integrase family protein; KEGG: efa:EF2255 phage integrase family site specific recombinase YP_003820478.1 KEGG: cbt:CLH_2362 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003820479.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: taf:THA_1337 HD domain protein YP_003820480.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cno:NT01CX_0287 glycerol dehydrogenase YP_003820481.1 KEGG: aoe:Clos_1944 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM YP_003820482.1 KEGG: amr:AM1_3379 acetyltransferase YP_003820483.1 KEGG: cpy:Cphy_1248 dipicolinate synthase subunit B; TIGRFAM: dipicolinic acid synthetase, B subunit; PFAM: flavoprotein YP_003820484.1 KEGG: cpy:Cphy_1249 dipicolinate synthase subunit A YP_003820485.1 KEGG: cbe:Cbei_4776 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_003820486.1 KEGG: cbk:CLL_A3150 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003820487.1 KEGG: ere:EUBREC_1899 hypothetical protein YP_003820488.1 KEGG: cpy:Cphy_1148 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003820489.1 KEGG: cpy:Cphy_3541 Zn-finger containing protein YP_003820490.1 KEGG: cdl:CDR20291_2370 hypothetical protein YP_003820491.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cdl:CDR20291_2369 hypothetical protein YP_003820492.1 PFAM: aldo/keto reductase; KEGG: pdi:BDI_1188 oxidoreductase YP_003820493.1 PFAM: protein of unknown function DUF951; KEGG: ere:EUBREC_3267 hypothetical protein YP_003820494.1 KEGG: cpy:Cphy_3774 ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like YP_003820495.1 KEGG: eel:EUBELI_01955 single-strand DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n YP_003820496.1 KEGG: ere:EUBREC_3263 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18 YP_003820497.1 KEGG: cbf:CLI_0762 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003820498.1 KEGG: ctc:CTC00896 transcriptional regulatory protein; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp YP_003820499.1 KEGG: cpy:Cphy_0098 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR YP_003820500.1 KEGG: cpy:Cphy_0099 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003820501.1 KEGG: cpy:Cphy_0100 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003820502.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ctc:CTC00572 hypothetical protein YP_003820503.1 KEGG: ere:EUBREC_0924 response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003820504.1 KEGG: cbt:CLH_2760 sensory transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein YP_003820505.1 KEGG: rcu:RCOM_0963890 structural maintenance of chromosomes 5 smc5 YP_003820506.1 KEGG: aoe:Clos_0781 hypothetical protein YP_003820507.1 manually curated; TIGRFAM: RNA polymerase sigma-I factor; KEGG: cth:Cthe_2521 RNA polymerase sigma factor SigI; PFAM: sigma-70 region 2 domain protein YP_003820508.1 KEGG: cbe:Cbei_1303 hypothetical protein YP_003820509.1 PFAM: Transglycosylase-associated protein; KEGG: fma:FMG_0439 hypothetical protein YP_003820510.1 KEGG: cpr:CPR_0487 sensor histidine kinase YP_003820511.1 KEGG: cbf:CLI_1146 DNA-binding response regulator; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver YP_003820512.1 PFAM: Na+/solute symporter; KEGG: str:Sterm_1796 Na+/solute symporter YP_003820513.1 KEGG: ctc:CTC00820 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003820514.1 KEGG: ere:EUBREC_1418 sodium:alanine symporter family protein; TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter YP_003820515.1 TIGRFAM: tyrosine phenol-lyase; KEGG: aap:NT05HA_0124 tyrosine phenol-lyase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003820516.1 KEGG: cce:Ccel_1228 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003820517.1 KEGG: cce:Ccel_1227 histidine kinase; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003820518.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cce:Ccel_1223 periplasmic binding protein/LacI transcriptional regulator YP_003820519.1 KEGG: cce:Ccel_1224 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003820520.1 PFAM: inner-membrane translocator; KEGG: cce:Ccel_1225 inner-membrane translocator YP_003820521.1 PFAM: inner-membrane translocator; KEGG: cce:Ccel_1226 inner-membrane translocator YP_003820522.1 KEGG: ere:EUBREC_0466 hypothetical protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003820523.1 TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; KEGG: cno:NT01CX_0335 DNA topoisomerase III; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein YP_003820524.1 KEGG: cpf:CPF_1547 LacI family transcription regulator; PFAM: regulatory protein LacI; SMART: regulatory protein LacI YP_003820525.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: cpy:Cphy_1448 phosphonate ABC transporter, periplasmic phosphonate-binding protein YP_003820526.1 TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: cpy:Cphy_1449 phosphonate ABC transporter, ATPase subunit; SMART: AAA ATPase YP_003820527.1 KEGG: cpy:Cphy_1450 phosphonate ABC transporter, inner membrane subunit; TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003820528.1 KEGG: cpy:Cphy_1451 phosphonate ABC transporter, inner membrane subunit; TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003820529.1 PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; KEGG: cpy:Cphy_1452 5'-nucleotidase domain-containing protein YP_003820530.1 PFAM: carbon starvation protein CstA; KEGG: ere:EUBREC_0196 carbon starvation-induced protein YP_003820531.1 KEGG: gka:GK2100 hypothetical protein YP_003820532.1 KEGG: dae:Dtox_3121 mucin 17-like protein YP_003820533.1 PFAM: Recombinase; Resolvase domain; KEGG: ckr:CKR_0220 hypothetical protein YP_003820534.1 KEGG: ckr:CKR_0221 hypothetical protein YP_003820535.1 KEGG: ckl:CKL_0263 hypothetical protein YP_003820536.1 PFAM: Sigma-70 region 4 type 2; KEGG: ckl:CKL_0264 hypothetical protein YP_003820537.1 KEGG: ckl:CKL_0265 hypothetical protein YP_003820538.1 PFAM: Methyltransferase type 11; KEGG: cac:CAC0541 SAM-dependent methyltransferase YP_003820539.1 KEGG: cpy:Cphy_0672 TetR family transcriptional regulator YP_003820540.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bld:BLi00319 hypothetical protein YP_003820541.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cbe:Cbei_3466 LysR family transcriptional regulator YP_003820542.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: ckr:CKR_0230 hypothetical protein YP_003820543.1 KEGG: ckr:CKR_0231 hypothetical protein YP_003820544.1 KEGG: ckr:CKR_2554 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003820545.1 KEGG: ckl:CKL_2874 hypothetical protein YP_003820546.1 KEGG: ckr:CKR_0233 hypothetical protein YP_003820547.1 KEGG: ckl:CKL_0278 hypothetical protein YP_003820548.1 KEGG: ckr:CKR_0234 hypothetical protein YP_003820549.1 KEGG: ckr:CKR_0235 hypothetical protein YP_003820550.1 KEGG: efa:EF2313 hypothetical protein YP_003820551.1 KEGG: ckr:CKR_0236 hypothetical protein YP_003820552.1 KEGG: ckl:CKL_0282 hypothetical protein YP_003820553.1 PFAM: NLP/P60 protein; KEGG: ckr:CKR_0237 hypothetical protein YP_003820554.1 KEGG: ckl:CKL_0284 hypothetical protein YP_003820555.1 KEGG: ckr:CKR_0239 hypothetical protein YP_003820556.1 KEGG: ckr:CKR_0240 hypothetical protein YP_003820557.1 PFAM: SpoVG family protein; KEGG: ckr:CKR_0241 hypothetical protein YP_003820558.1 KEGG: ckr:CKR_0242 hypothetical protein YP_003820559.1 KEGG: ckl:CKL_0289 hypothetical protein YP_003820560.1 KEGG: ckl:CKL_0291 hypothetical protein YP_003820561.1 KEGG: ckr:CKR_0244 hypothetical protein YP_003820562.1 KEGG: ckr:CKR_0246 hypothetical protein YP_003820563.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: ckr:CKR_0247 hypothetical protein; SMART: ParB domain protein nuclease YP_003820564.1 KEGG: sgo:SGO_0640 modification methylase YP_003820565.1 PFAM: ATP-binding region ATPase domain protein; KEGG: cbt:CLH_1761 hypothetical protein YP_003820566.1 PFAM: Collagen triple helix repeat; KEGG: bat:BAS1130 hypothetical protein YP_003820567.1 KEGG: dhd:Dhaf_1568 response regulator receiver and SARP domain protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003820569.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cpy:Cphy_3758 phosphoesterase domain-containing protein YP_003820570.1 KEGG: cpy:Cphy_3757 ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9-like YP_003820571.1 KEGG: ere:EUBREC_3258 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein YP_003820572.1 KEGG: ere:EUBREC_0112 hypothetical protein; PFAM: regulatory protein MerR; SMART: regulatory protein MerR YP_003820573.1 PFAM: peptidase C26; KEGG: cpy:Cphy_2536 peptidase C26 YP_003820574.1 KEGG: cac:CAC0303 ferredoxin YP_003820575.1 TIGRFAM: pyruvate formate-lyase activating enzyme; KEGG: cpy:Cphy_2820 pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein YP_003820576.1 PFAM: formate C-acetyltransferase glycine radical; KEGG: cpy:Cphy_2821 autonomous glycyl radical cofactor GrcA YP_003820577.1 KEGG: cpy:Cphy_2822 hypothetical protein YP_003820578.1 TIGRFAM: formate acetyltransferase; KEGG: cpy:Cphy_2823 formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical YP_003820579.1 PFAM: Domain of unknown function DUF1858; KEGG: cpy:Cphy_3753 hypothetical protein YP_003820580.1 PFAM: glycoside hydrolase family 4; KEGG: cpy:Cphy_0769 glycoside hydrolase family protein YP_003820581.1 KEGG: cpy:Cphy_0768 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003820582.1 PFAM: sodium:dicarboxylate symporter; KEGG: cpy:Cphy_1461 sodium:dicarboxylate symporter YP_003820583.1 TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; KEGG: cpy:Cphy_1460 L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: serine dehydratase beta chain; amino acid-binding ACT domain protein YP_003820584.1 TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; KEGG: cpy:Cphy_1459 L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: serine dehydratase alpha chain YP_003820585.1 KEGG: cbi:CLJ_B1151 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003820586.1 KEGG: bln:Blon_1686 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003820587.1 KEGG: lba:Lebu_2230 alpha/beta hydrolase fold-3 domain protein YP_003820588.1 PFAM: Negative regulator of genetic competence; KEGG: cpy:Cphy_3752 negative regulator of genetic competence sporulation and motility-like protein YP_003820589.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cdl:CDR20291_1949 hypothetical protein YP_003820590.1 KEGG: ere:EUBREC_0033 serine/threonine protein kinase fused to TPR repeats domain; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain YP_003820591.1 KEGG: bpf:BpOF4_21099 hypothetical protein YP_003820592.1 KEGG: lsg:lse_0294 short-chain dehydrogenase/reductase (SDR) family protein YP_003820593.1 KEGG: cpy:Cphy_3749 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 18; SH3 type 3 domain protein; SMART: chitinase II; SH3 domain protein YP_003820594.1 PFAM: metallophosphoesterase; KEGG: lsg:lse_2547 serine/threonine protein phosphatase family protein YP_003820595.1 KEGG: cpy:Cphy_3748 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_003820596.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pdi:BDI_0280 hexulose-6-phosphate isomerase YP_003820597.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pjd:Pjdr2_0385 binding-protein-dependent transport systems inner membrane component YP_003820598.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pjd:Pjdr2_0386 binding-protein-dependent transport systems inner membrane component YP_003820599.1 PFAM: extracellular solute-binding protein family 1; KEGG: eat:EAT1b_2326 extracellular solute-binding protein family 1 YP_003820600.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: gym:GYMC10_4658 oxidoreductase domain protein YP_003820601.1 PFAM: ROK family protein; KEGG: bay:RBAM_017340 XylR YP_003820602.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: str:Sterm_4053 oxidoreductase domain protein YP_003820603.1 KEGG: cth:Cthe_0039 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003820604.1 TIGRFAM: aspartate/ammonia ligase; KEGG: lfe:LAF_1602 asparagine synthetase AsnA; PFAM: aspartate--ammonia ligase YP_003820605.1 KEGG: ere:EUBREC_0113 translation factor (SUA5); TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SUA5 domain protein YP_003820606.1 KEGG: eel:EUBELI_01938 dCMP deaminase; PFAM: CMP/dCMP deaminase zinc-binding YP_003820607.1 KEGG: cpy:Cphy_0143 cobalamin B12-binding domain-containing protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003820608.1 SMART: HhH-GPD family protein; iron-sulfur cluster loop; TIGRFAM: endonuclease III; KEGG: cpy:Cphy_0144 endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop YP_003820609.1 SMART: Exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: eel:EUBELI_01863 DNA polymerase; PFAM: Exonuclease RNase T and DNA polymerase III YP_003820610.1 KEGG: eel:EUBELI_01861 hypothetical protein YP_003820611.1 PFAM: VanW family protein; G5 domain protein; KEGG: ere:EUBREC_3006 hypothetical protein YP_003820612.1 PFAM: AIR synthase related protein domain protein; KEGG: eel:EUBELI_01860 hydrogenase expression/formation protein HypE YP_003820613.1 KEGG: eel:EUBELI_01859 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type YP_003820614.1 PFAM: aminotransferase class I and II; KEGG: cpy:Cphy_0150 aminotransferase class I and II YP_003820615.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cpy:Cphy_0152 tRNA/rRNA methyltransferase (SpoU) YP_003820616.1 KEGG: ere:EUBREC_2917 sensory transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003820617.1 KEGG: cpy:Cphy_0154 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003820618.1 TIGRFAM: MutS2 family protein; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; KEGG: cpy:Cphy_0153 MutS2 family protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; Smr protein/MutS2 YP_003820619.1 KEGG: cpy:Cphy_0156 PDZ/DHR/GLGF domain-containing protein; PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003820620.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ere:EUBREC_2913 HD-superfamily hydrolase; SMART: metal-dependent phosphohydrolase HD region YP_003820621.1 KEGG: cpy:Cphy_0867 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003820622.1 KEGG: cbk:CLL_A1757 two-component sensor histidine kinase; PFAM: histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase A domain protein; ATP-binding region ATPase domain protein YP_003820623.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: efa:EF3044 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_003820624.1 KEGG: cpy:Cphy_2830 phosphate uptake regulator, PhoU; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein YP_003820625.1 TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: cpy:Cphy_2831 phosphate ABC transporter, ATPase subunit; SMART: AAA ATPase YP_003820626.1 KEGG: cpy:Cphy_2832 phosphate ABC transporter, inner membrane subunit PstA; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component YP_003820627.1 KEGG: cpy:Cphy_2833 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component YP_003820628.1 KEGG: cpy:Cphy_2834 phosphate binding protein; TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1 YP_003820629.1 PFAM: plasmid pRiA4b ORF-3 family protein; SEC-C motif domain protein; KEGG: pjd:Pjdr2_0229 sec-C motif domain protein YP_003820630.1 KEGG: cpy:Cphy_1040 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_003820631.1 PFAM: oxidoreductase domain protein; KEGG: cpy:Cphy_2089 oxidoreductase domain-containing protein YP_003820632.1 KEGG: cbe:Cbei_0031 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003820633.1 TIGRFAM: sporulation transcriptional regulator SpoIIID; KEGG: cpy:Cphy_0210 sporulation transcriptional regulator SpoIIID YP_003820634.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: ere:EUBREC_3345 lysine decarboxylase YP_003820635.1 KEGG: ere:EUBREC_3344 spermidine synthase; TIGRFAM: spermidine synthase; PFAM: Spermine synthase YP_003820636.1 PFAM: Saccharopine dehydrogenase; KEGG: ere:EUBREC_3343 hypothetical protein YP_003820637.1 KEGG: bha:BH3958 carboxynorspermidine decarboxylase; TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_003820638.1 TIGRFAM: agmatine deiminase; KEGG: ere:EUBREC_3341 hypothetical protein; PFAM: Porphyromonas-type peptidyl-arginine deiminase YP_003820639.1 KEGG: snt:SPT_1277 N-carbamoylputrescine amidase; TIGRFAM: N-carbamoylputrescine amidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003820640.1 KEGG: ere:EUBREC_0548 hypothetical protein YP_003820641.1 KEGG: cth:Cthe_2066 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein YP_003820642.1 KEGG: cpy:Cphy_3794 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM YP_003820643.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: ere:EUBREC_0245 O-methyltransferase YP_003820644.1 KEGG: cpy:Cphy_3776 hemolysin III family channel protein; TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein YP_003820645.1 PFAM: nitroreductase; KEGG: dsy:DSY1460 hypothetical protein YP_003820646.1 PFAM: pseudouridine synthase; KEGG: cdl:CDR20291_3420 pseudouridylate synthase YP_003820647.1 KEGG: cpy:Cphy_3838 sporulation integral membrane protein YtvI; TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118 YP_003820648.1 TIGRFAM: prolyl-tRNA synthetase; KEGG: cpy:Cphy_3837 prolyl-tRNA synthetase; PFAM: Prolyl-tRNA synthetase, class II-like; tRNA synthetase class II (G H P and S); Anticodon-binding domain protein YP_003820649.1 PFAM: Polynucleotide adenylyltransferase region; KEGG: eel:EUBELI_00075 tRNA nucleotidyltransferase (CCA-adding enzyme) YP_003820650.1 KEGG: cpy:Cphy_3824 CotS family spore coat protein YP_003820651.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cpy:Cphy_2261 phosphoglucomutase/phosphomannomutase alpha/beta/subunit YP_003820652.1 PFAM: protein of unknown function DUF1113; KEGG: eel:EUBELI_20058 hypothetical protein YP_003820653.1 KEGG: cpy:Cphy_0362 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003820654.1 KEGG: cpy:Cphy_0242 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl YP_003820655.1 TIGRFAM: helicase, RecD/TraA family; KEGG: cpy:Cphy_0246 RecD/TraA family helicase; SMART: AAA ATPase YP_003820656.1 PFAM: phosphoribosyltransferase; KEGG: cpy:Cphy_0248 amidophosphoribosyltransferase YP_003820657.1 KEGG: ckr:CKR_2020 hypothetical protein; PFAM: GCN5-related N-acetyltransferase YP_003820658.1 KEGG: eel:EUBELI_00088 7-cyano-7-deazaguanine reductase; PFAM: Methyltransferase type 11; regulatory protein MerR; SMART: regulatory protein MerR YP_003820659.1 KEGG: eel:EUBELI_00087 glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase YP_003820660.1 KEGG: cpy:Cphy_3680 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_003820661.1 KEGG: cbe:Cbei_4752 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase YP_003820662.1 KEGG: bcl:ABC1123 hypothetical protein; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain YP_003820663.1 PFAM: extracellular solute-binding protein family 1; KEGG: npu:Npun_F5652 extracellular solute-binding protein YP_003820664.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gym:GYMC10_1297 binding-protein-dependent transport systems inner membrane component YP_003820665.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2740 binding-protein-dependent transport systems inner membrane component YP_003820666.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sea:SeAg_B1541 mandelate racemase/muconate lactonizing enzyme, C-domain protein YP_003820667.1 manually curated; TIGRFAM: ribosomal protein L33; KEGG: ere:EUBREC_0371 hypothetical protein; PFAM: ribosomal protein L33 YP_003820668.1 KEGG: eel:EUBELI_00277 hypothetical protein; TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein YP_003820669.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KEGG: ere:EUBREC_0373 transcription antitermination protein NusG; SMART: NGN domain protein YP_003820670.1 TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11-like; KEGG: cpy:Cphy_3693 ribosomal protein L11; SMART: ribosomal protein L11 YP_003820671.1 KEGG: eel:EUBELI_00280 large subunit ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1 YP_003820672.1 PFAM: ribosomal protein L10; KEGG: ere:EUBREC_0376 50S ribosomal protein L10 YP_003820673.1 KEGG: cpy:Cphy_3690 ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12 YP_003820674.1 KEGG: cpy:Cphy_2863 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein YP_003820675.1 PFAM: polysaccharide deacetylase; KEGG: ssa:SSA_0963 peptidoglycan N-acetylglucosamine deacetylase A YP_003820676.1 PFAM: cell wall binding repeat-containing protein; KEGG: ccu:Ccur_08300 glycosyl hydrolase family 25 YP_003820678.1 KEGG: lin:lin2724 internalin-like protein; TIGRFAM: cell wall/surface repeat protein; PFAM: Listeria/Bacterioides repeat protein; cell wall binding repeat-containing protein YP_003820679.1 PFAM: Ig domain protein group 2 domain protein; KEGG: cce:Ccel_2338 hypothetical protein YP_003820680.1 KEGG: lma:LmjF34.0690 hypothetical protein YP_003820683.1 PFAM: transglutaminase domain protein; KEGG: cdf:CD3366 hypothetical protein YP_003820684.1 KEGG: bcg:BCG9842_B4210 collagen adhesion protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Cna B domain protein YP_003820685.1 KEGG: bbo:BBOV_III007200 hypothetical protein YP_003820686.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: str:Sterm_4102 oxidoreductase domain protein YP_003820687.1 KEGG: eel:EUBELI_01348 ATPase; PFAM: ATPase AAA; SMART: AAA ATPase YP_003820688.1 TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; Rho termination factor domain protein; KEGG: eel:EUBELI_01447 transcription termination factor Rho; SMART: Cold shock protein; AAA ATPase YP_003820689.1 KEGG: eel:EUBELI_01445 large subunit ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31 YP_003820690.1 PFAM: protein of unknown function DUF1385; KEGG: ere:EUBREC_1486 hypothetical protein YP_003820691.1 TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; KEGG: cpy:Cphy_0413 protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small YP_003820692.1 KEGG: ere:EUBREC_1488 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein YP_003820693.1 KEGG: bhy:BHWA1_02517 transcriptional antiterminator , BglB; PFAM: PRD domain protein; M trans-acting positive regulator; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 YP_003820694.1 PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: lsg:lse_2591 PTS system, beta-glucoside-specific, IIA component YP_003820695.1 PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: bcu:BCAH820_3049 PTS system, lactose/cellobiose-specific IIB subunit YP_003820696.1 TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; KEGG: ppe:PEPE_0023 cellobiose-specific PTS system IIC component; PFAM: phosphotransferase system EIIC YP_003820697.1 KEGG: lwe:lwe0496 glycosy hydrolase family protein; PFAM: glycoside hydrolase family 4 YP_003820698.1 KEGG: sro:Sros_2053 chitosanase; PFAM: glycoside hydrolase family 46 YP_003820699.1 KEGG: afn:Acfer_0612 protein of unknown function DUF1063 YP_003820700.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: afn:Acfer_0418 transcriptional regulator, LysR family YP_003820701.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cpy:Cphy_1103 oxidoreductase domain-containing protein YP_003820702.1 KEGG: ccu:Ccur_08300 glycosyl hydrolase family 25 YP_003820703.1 TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; ATPase AAA; Clp domain protein; Clp ATPase-like; KEGG: eel:EUBELI_01260 ATP-dependent Clp protease ATP-binding subunit ClpB; SMART: AAA ATPase YP_003820704.1 KEGG: ctc:CTC01877 L-asparaginase; TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase YP_003820705.1 KEGG: eel:EUBELI_01259 hypothetical protein YP_003820706.1 KEGG: cno:NT01CX_1068 cardiolipin synthetase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase YP_003820707.1 KEGG: hor:Hore_05240 hypothetical protein YP_003820708.1 TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: cpy:Cphy_3787 1-acyl-sn-glycerol-3-phosphate acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_003820709.1 KEGG: ere:EUBREC_1954 prephenate dehydratase; PFAM: prephenate dehydratase; Chorismate mutase, type II YP_003820710.1 KEGG: eel:EUBELI_00941 hypothetical protein; PFAM: protein of unknown function DUF815; SMART: AAA ATPase YP_003820711.1 PFAM: Ppx/GppA phosphatase; KEGG: dhd:Dhaf_2106 Ppx/GppA phosphatase YP_003820712.1 TIGRFAM: Polyphosphate kinase; KEGG: ckr:CKR_1981 hypothetical protein; PFAM: Polyphosphate kinase YP_003820713.1 KEGG: cpy:Cphy_3518 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003820714.1 KEGG: cpy:Cphy_3517 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003820715.1 KEGG: swo:Swol_1724 hypothetical protein YP_003820716.1 KEGG: cpy:Cphy_3515 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003820717.1 KEGG: cpy:Cphy_3514 hypothetical protein YP_003820718.1 SMART: AP endonuclease family 2; TIGRFAM: apurinic endonuclease Apn1; KEGG: cbe:Cbei_0552 apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel YP_003820719.1 KEGG: aoe:Clos_0334 hypothetical protein YP_003820720.1 KEGG: llm:llmg_1102 hypothetical protein YP_003820721.1 PFAM: protein of unknown function DUF477; KEGG: aoe:Clos_0336 hypothetical protein YP_003820722.1 PFAM: sugar fermentation stimulation protein; KEGG: dhd:Dhaf_1036 sugar fermentation stimulation protein YP_003820723.1 TIGRFAM: threonine synthase; KEGG: eel:EUBELI_01364 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003820724.1 KEGG: cpy:Cphy_1252 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003820725.1 TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; KEGG: cpy:Cphy_3683 fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II YP_003820726.1 PFAM: glutamine synthetase catalytic region; KEGG: ere:EUBREC_0701 hypothetical protein YP_003820727.1 TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; KEGG: cbe:Cbei_0975 HisJ family histidinol phosphate phosphatase; SMART: phosphoesterase PHP domain protein YP_003820728.1 KEGG: cbe:Cbei_3440 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain YP_003820729.1 PFAM: peptidase M42 family protein; KEGG: cpy:Cphy_1100 peptidase M42 family protein YP_003820730.1 PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: apr:Apre_1586 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit YP_003820731.1 PFAM: glycoside hydrolase family 4; KEGG: bcx:BCA_5337 6-phospho-beta-glucosidase YP_003820732.1 KEGG: lwe:lwe0330 PTS system, beta-glucoside-specific, IIB component; manually curated; PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit YP_003820733.1 TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; KEGG: ssb:SSUBM407_1925 sugar phosphotransferase system (PTS), IIC component; PFAM: phosphotransferase system EIIC YP_003820734.1 KEGG: smf:Smon_0202 beta-glucosidase; PFAM: glycoside hydrolase family 1 YP_003820735.1 KEGG: smf:Smon_0201 hypothetical protein YP_003820736.1 KEGG: GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SMART: regulatory protein GntR HTH YP_003820737.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dhd:Dhaf_3912 2-hydroxyglutaryl-CoA dehydratase D-component YP_003820738.1 TIGRFAM: CoA-substrate-specific enzyme activase; KEGG: amt:Amet_3210 CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type YP_003820739.1 KEGG: cdf:CD2175 amino-acid ABC transporter, permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003820740.1 KEGG: cdl:CDR20291_2080 amino-acid ABC transporter, substrate-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_003820741.1 KEGG: cdl:CDR20291_2078 amino-acid ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003820742.1 PFAM: protein of unknown function DUF871; KEGG: bcx:BCA_0850 hypothetical protein YP_003820743.1 KEGG: cbe:Cbei_4467 Cof-like hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_003820744.1 PFAM: purine or other phosphorylase family 1; KEGG: cbe:Cbei_3129 uridine phosphorylase YP_003820745.1 KEGG: cbe:Cbei_3130 regulatory protein GntR, HTH; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003820746.1 PFAM: basic membrane lipoprotein; KEGG: tle:Tlet_1019 basic membrane lipoprotein YP_003820747.1 KEGG: clo:HMPREF0868_0265 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003820748.1 PFAM: inner-membrane translocator; KEGG: tle:Tlet_1021 inner-membrane translocator YP_003820749.1 PFAM: inner-membrane translocator; KEGG: clo:HMPREF0868_0267 amino acid or sugar ABC transport system, permease protein YP_003820750.1 PFAM: purine or other phosphorylase family 1; KEGG: sse:Ssed_2504 uridine phosphorylase YP_003820751.1 PFAM: purine or other phosphorylase family 1; KEGG: cbe:Cbei_3129 uridine phosphorylase YP_003820752.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: pjd:Pjdr2_3298 inosine/uridine-preferring nucleoside hydrolase YP_003820753.1 PFAM: glycosyl transferase family 2; KEGG: eel:EUBELI_00098 hypothetical protein YP_003820754.1 KEGG: mst:Msp_0531 nucleoside-diphosphate-sugar pyrophosphorylase; TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase YP_003820755.1 KEGG: CDP-D-glucose-4,6-dehydratase; TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_003820756.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mst:Msp_0533 pyridoxal-phosphate-dependent aminotransferase YP_003820757.1 PFAM: LicD family protein; KEGG: cbe:Cbei_4631 LicD family protein YP_003820758.1 KEGG: eel:EUBELI_20482 betaine/carnitine transporter, BCCT family; TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter YP_003820759.1 KEGG: esi:Exig_1511 hypothetical protein YP_003820760.1 KEGG: cce:Ccel_2610 hypothetical protein YP_003820761.1 KEGG: amt:Amet_2322 amino acid carrier protein; TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter YP_003820762.1 KEGG: ere:EUBREC_3619 hypothetical protein YP_003820763.1 KEGG: ere:EUBREC_3618 L-rhamnose operon transcriptional activator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003820764.1 KEGG: dhd:Dhaf_0526 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003820765.1 KEGG: dhd:Dhaf_0527 endopeptidase Clp; PFAM: peptidase S14 ClpP YP_003820766.1 KEGG: cdl:CDR20291_1650 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003820767.1 TIGRFAM: peptide deformylase; KEGG: cdl:CDR20291_1651 peptide deformylase 1; PFAM: formylmethionine deformylase YP_003820768.1 PFAM: major facilitator superfamily MFS_1; KEGG: cpy:Cphy_2115 major facilitator transporter YP_003820769.1 KEGG: cbe:Cbei_3673 penicillin amidase; PFAM: Choloylglycine hydrolase YP_003820770.1 KEGG: ere:EUBREC_2741 hypothetical protein YP_003820771.1 KEGG: cpy:Cphy_1255 peptidylprolyl isomerase; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type YP_003820772.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cpy:Cphy_0822 HAD family hydrolase YP_003820773.1 KEGG: eel:EUBELI_01827 hypothetical protein YP_003820774.1 PFAM: protein of unknown function DUF624; KEGG: cpy:Cphy_3376 hypothetical protein YP_003820775.1 PFAM: RelA/SpoT domain protein; KEGG: dsy:DSY3807 hypothetical protein YP_003820776.1 KEGG: tex:Teth514_0555 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter YP_003820777.1 PFAM: nitrogen regulatory protein P-II; KEGG: eel:EUBELI_01823 nitrogen regulatory protein P-II 1 YP_003820778.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: ere:EUBREC_0999 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein YP_003820779.1 KEGG: eel:EUBELI_00160 Mn-dependent transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003820780.1 KEGG: rpe:RPE_3538 hypothetical protein YP_003820781.1 PFAM: regulatory protein TetR; KEGG: lrh:LGG_01162 transcriptional regulator, TetR family YP_003820782.1 KEGG: dhd:Dhaf_4521 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003820783.1 PFAM: acriflavin resistance protein; KEGG: cbk:CLL_A0335 cation/multidrug efflux pump YP_003820784.1 KEGG: mrb:Mrub_2976 outer membrane efflux protein YP_003820785.1 KEGG: cbt:CLH_2562 viral A-type inclusion protein YP_003820786.1 KEGG: cce:Ccel_0292 stage II sporulation protein R; TIGRFAM: stage II sporulation protein R; PFAM: Sporulation stage II protein R YP_003820787.1 TIGRFAM: D-alanine/D-alanine ligase; KEGG: cpy:Cphy_3791 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein YP_003820788.1 TIGRFAM: glutamate racemase; KEGG: cpy:Cphy_3790 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_003820789.1 PFAM: Domain of unknown function DUF1934; KEGG: ere:EUBREC_1004 hypothetical protein YP_003820790.1 KEGG: ere:EUBREC_2974 abortive infection protein YP_003820791.1 PFAM: integrase family protein; KEGG: apj:APJL_1437 integrase YP_003820792.1 PFAM: integrase family protein; KEGG: ccv:CCV52592_0372 oxygen-independent coproporphyrinogen III oxidase YP_003820793.1 PFAM: cell wall binding repeat-containing protein; KEGG: cpe:CPE0630 hypothetical protein YP_003820794.1 KEGG: dhd:Dhaf_4478 O-antigen polymerase YP_003820795.1 KEGG: afn:Acfer_0566 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase YP_003820796.1 PFAM: glycosyl transferase group 1; KEGG: ere:EUBREC_2770 glycosyltransferase family 4-like A-glycosyltransferase YP_003820797.1 PFAM: ABC transporter; KEGG: ate:Athe_0052 ABC transporter YP_003820798.1 KEGG: ate:Athe_0053 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003820799.1 PFAM: glycosyl transferase group 1; KEGG: bwe:BcerKBAB4_3394 glycosyl transferase group 1 YP_003820800.1 PFAM: glycosyl transferase group 1; KEGG: cpe:CPE0485 capsular polysaccharide biosynthsis protein YP_003820801.1 PFAM: glycosyl transferase group 1; KEGG: cpe:CPE0480 capsular polysaccharide biosynthsis protein YP_003820803.1 KEGG: lmc:Lm4b_02727 hypothetical protein YP_003820804.1 KEGG: xcb:XC_1585 hypothetical protein YP_003820805.1 PFAM: WxcM domain protein domain protein; KEGG: fph:Fphi_1256 WblP protein YP_003820806.1 PFAM: glycosyl transferase family 2; KEGG: gym:GYMC10_5810 glycosyl transferase family 2 YP_003820807.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aoe:Clos_1263 GCN5-related N-acetyltransferase YP_003820808.1 KEGG: cdl:CDR20291_0247 hypothetical protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_003820809.1 PFAM: GtrA family protein; KEGG: btk:BT9727_5111 GtrA family membrane protein YP_003820810.1 PFAM: IS66 Orf2 family protein; KEGG: cce:Ccel_2969 IS66 Orf2 family protein YP_003820811.1 KEGG: cth:Cthe_0517 hypothetical protein YP_003820812.1 KEGG: cth:Cthe_0515 transposase IS66 YP_003820813.1 KEGG: cce:Ccel_2969 IS66 Orf2 family protein; manually curated; PFAM: IS66 Orf2 family protein YP_003820814.1 KEGG: cce:Ccel_2968 hypothetical protein YP_003820815.1 KEGG: cth:Cthe_0517 hypothetical protein YP_003820816.1 PFAM: IS66 Orf2 family protein; KEGG: cce:Ccel_2969 IS66 Orf2 family protein YP_003820817.1 KEGG: fma:FMG_0204 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003820818.1 PFAM: Pirin domain protein; KEGG: cce:Ccel_2756 pirin domain protein YP_003820819.1 PFAM: nitroreductase; KEGG: fma:FMG_0206 nitroreductase family protein YP_003820820.1 KEGG: ptm:GSPATT00008754001 hypothetical protein YP_003820821.1 PFAM: cell wall binding repeat-containing protein; KEGG: shi:Shel_14460 glucan-binding domain-containing protein YP_003820822.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: ccu:Ccur_10450 thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase YP_003820823.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: mst:Msp_0537 nucleoside-diphosphate-sugar epimerase YP_003820824.1 PFAM: C-methyltransferase; Methyltransferase type 11; KEGG: tmz:Tmz1t_2880 methyltransferase type 11 YP_003820825.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mba:Mbar_A2344 alcohol dehydrogenase (NADP+) YP_003820826.1 PFAM: glycosyl transferase family 2; KEGG: ccu:Ccur_10440 glycosyl transferase YP_003820827.1 PFAM: glycosyl transferase family 2; KEGG: eel:EUBELI_00095 hypothetical protein YP_003820828.1 PFAM: glycosyl transferase family 2; KEGG: msi:Msm_1329 glycosyl transferase YP_003820829.1 TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: cpy:Cphy_3542 undecaprenyl-phosphate glucose phosphotransferase; PFAM: sugar transferase YP_003820830.1 KEGG: ere:EUBREC_2613 hypothetical protein; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator YP_003820831.1 KEGG: cpy:Cphy_3543 2-alkenal reductase; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003820832.1 KEGG: tit:Thit_1687 transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003820833.1 PFAM: extracellular solute-binding protein family 1; KEGG: hor:Hore_15560 extracellular solute-binding protein family 1 YP_003820834.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hor:Hore_15550 binding-protein-dependent transport systems inner membrane component YP_003820835.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pna:Pnap_0230 binding-protein-dependent transport systems inner membrane component YP_003820836.1 KEGG: efa:EF1816 hypothetical protein YP_003820837.1 PFAM: metallophosphoesterase; KEGG: rca:Rcas_3673 metallophosphoesterase YP_003820838.1 KEGG: shi:Shel_27240 protein tyrosine/serine phosphatase YP_003820839.1 KEGG: ere:EUBREC_0489 alpha-galactosidase YP_003820840.1 KEGG: ere:EUBREC_0490 glycosidase YP_003820842.1 KEGG: cby:CLM_2587 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003820843.1 KEGG: cbe:Cbei_3087 hypothetical protein YP_003820844.1 KEGG: eel:EUBELI_00570 hypothetical protein YP_003820845.1 KEGG: eel:EUBELI_00571 hypothetical protein; TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase YP_003820846.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; KEGG: ere:EUBREC_1171 ATP-dependent protease ATPase subunit ClpX; SMART: AAA ATPase YP_003820847.1 PFAM: peptidase A8 signal peptidase II; KEGG: cpy:Cphy_0324 peptidase A8 signal peptidase II YP_003820848.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: cpy:Cphy_3015 hypothetical protein YP_003820849.1 KEGG: cpy:Cphy_3435 hypothetical protein YP_003820850.1 KEGG: eel:EUBELI_01392 hypothetical protein YP_003820851.1 PFAM: Radical SAM domain protein; KEGG: ere:EUBREC_1011 arylsulfatase regulator (Fe-S oxidoreductase) YP_003820852.1 KEGG: eel:EUBELI_01390 preprotein translocase SecD subunit / preprotein translocase SecF subunit; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein YP_003820853.1 TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; KEGG: ere:EUBREC_1880 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_003820854.1 KEGG: cpy:Cphy_3437 preprotein translocase, YajC subunit; TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein YP_003820855.1 PFAM: extracellular solute-binding protein family 1; KEGG: carbohydrate-binding protein YP_003820856.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: carbohydrate ABC transporter membrane protein YP_003820857.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: carbohydrate ABC transporter membrane protein YP_003820858.1 TIGRFAM: ketose-bisphosphate aldolase; KEGG: fructose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II YP_003820859.1 KEGG: mmp:MMP1296 ADP-specific phosphofructokinase YP_003820860.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: ecz:ECS88_4265 hypothetical protein YP_003820861.1 PFAM: protein of unknown function DUF1498; KEGG: mrb:Mrub_1279 hypothetical protein YP_003820862.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: eel:EUBELI_00362 3-oxoacyl-[acyl-carrier protein] reductase YP_003820863.1 KEGG: cpy:Cphy_0254 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003820864.1 KEGG: eel:EUBELI_00363 sigma-54 modulation protein; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA YP_003820865.1 KEGG: ere:EUBREC_2789 protein translocase subunit SecA; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; SecA Wing and Scaffold; SEC-C motif domain protein YP_003820866.1 manually curated YP_003820867.1 PFAM: amino acid-binding ACT domain protein; KEGG: ere:EUBREC_0723 hypothetical protein YP_003820868.1 PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: cpy:Cphy_3603 homoserine dehydrogenase YP_003820869.1 KEGG: cpy:Cphy_3600 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein YP_003820870.1 KEGG: ere:EUBREC_0830 hypothetical protein YP_003820871.1 KEGG: ath:AT4G20140 GSO1 (GASSHO1); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase YP_003820872.1 KEGG: ere:EUBREC_0832 transcription accessory protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold YP_003820873.1 KEGG: cpy:Cphy_0345 hypothetical protein YP_003820874.1 PFAM: protein of unknown function UPF0079; KEGG: eel:EUBELI_00375 hypothetical protein YP_003820875.1 PFAM: peptidase M22 glycoprotease; KEGG: cpy:Cphy_0347 peptidase M22 glycoprotease YP_003820876.1 KEGG: cac:CAC2840 acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_003820877.1 KEGG: cpy:Cphy_0349 hypothetical protein YP_003820878.1 TIGRFAM: ribonuclease Z; KEGG: eel:EUBELI_00378 ribonuclease Z YP_003820879.1 TIGRFAM: metalloendopeptidase, glycoprotease family; KEGG: cpy:Cphy_0352 glycoprotease family metalloendopeptidase; PFAM: peptidase M22 glycoprotease YP_003820880.1 KEGG: ere:EUBREC_0842 4-diphosphocytidyl-2-methylerithritol synthase (sugar nucleotide phosphorylase family); TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_003820881.1 KEGG: dhd:Dhaf_2022 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003820882.1 KEGG: pmi:PMT9312_0395 deoxyribose-phosphate aldolase YP_003820883.1 KEGG: spu:585850 similar to Utp14a protein YP_003820884.1 KEGG: sti:Sthe_3422 beta-lactamase YP_003820885.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: aoe:Clos_0927 mandelate racemase/muconate lactonizing protein YP_003820886.1 PFAM: extracellular solute-binding protein family 5; KEGG: cpy:Cphy_3108 extracellular solute-binding protein YP_003820887.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_3107 binding-protein-dependent transport systems inner membrane component YP_003820888.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lsp:Bsph_2284 oligopeptide transport system permease protein YP_003820889.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: lsp:Bsph_2285 oligopeptide transport ATP-binding protein; SMART: AAA ATPase YP_003820890.1 KEGG: lsp:Bsph_2286 oligopeptide transport ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_003820891.1 PFAM: Citrate transporter; KEGG: cth:Cthe_3129 citrate transporter YP_003820892.1 PFAM: NLP/P60 protein; KEGG: lbu:LBUL_1667 cell wall-associated hydrolase YP_003820893.1 KEGG: ttr:Tter_0602 beta-lactamase YP_003820894.1 PFAM: extracellular solute-binding protein family 1; KEGG: apv:Apar_0009 extracellular solute-binding protein family 1 YP_003820895.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: apv:Apar_0010 binding-protein-dependent transport systems inner membrane component YP_003820896.1 KEGG: apv:Apar_0011 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_003820897.1 KEGG: bhy:BHWA1_00868 periplasmic-iron-binding protein BitB YP_003820898.1 KEGG: cpy:Cphy_2140 histidine kinase internal region; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein YP_003820899.1 KEGG: cpy:Cphy_2141 two component AraC family transcriptional regulator; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn-helix, AraC domain YP_003820900.1 KEGG: ctc:CTC01925 2-haloalkanoic acid dehalogenase I; TIGRFAM: HAD superfamily (subfamily IA) hydrolase, TIGR02254; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003820901.1 KEGG: cpy:Cphy_1760 membrane spanning protein YP_003820902.1 KEGG: ctc:CTC01923 catabolite gene activator; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding YP_003820903.1 PFAM: protein of unknown function DUF45; KEGG: hor:Hore_04470 predicted metal-dependent hydrolase YP_003820904.1 KEGG: cbk:CLL_A0667 methyl-accepting chemotaxis protein; PFAM: histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein YP_003820905.1 KEGG: cbe:Cbei_4321 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1 YP_003820906.1 KEGG: cpy:Cphy_3274 glycine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase YP_003820907.1 PFAM: protein of unknown function DUF1540; KEGG: cpy:Cphy_0722 hypothetical protein YP_003820908.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: tva:TVAG_357160 dTDP-4-dehydrorhamnose reductase YP_003820909.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: cpy:Cphy_1516 molybdopterin dehydrogenase FAD-binding YP_003820910.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: eel:EUBELI_01494 carbon-monoxide dehydrogenase small subunit YP_003820911.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: cpy:Cphy_1518 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding YP_003820912.1 KEGG: dsy:DSY4805 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003820913.1 PFAM: protein of unknown function DUF214; KEGG: dhd:Dhaf_4677 protein of unknown function DUF214 YP_003820914.1 KEGG: dhd:Dhaf_4678 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003820915.1 PFAM: cell wall binding repeat-containing protein; KEGG: shi:Shel_14460 glucan-binding domain-containing protein YP_003820916.1 KEGG: cce:Ccel_2230 hypothetical protein YP_003820917.1 KEGG: cpy:Cphy_0279 hypothetical protein YP_003820918.1 KEGG: eel:EUBELI_01135 hypothetical protein; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: Protein of unknown function DUF2229, CoA enzyme activase; ATPase BadF/BadG/BcrA/BcrD type YP_003820919.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: bad:BAD_0866 magnesium/cobalt transporter CorA YP_003820920.1 KEGG: cpy:Cphy_2901 hypothetical protein YP_003820921.1 TIGRFAM: pyruvate kinase; KEGG: eel:EUBELI_01133 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_003820922.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: ere:EUBREC_1457 diaminopimelate decarboxylase YP_003820923.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: apv:Apar_0233 peptidase M20 YP_003820924.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpy:Cphy_3062 peptidase S8/S53 subtilisin kexin sedolisin YP_003820925.1 TIGRFAM: recA protein; PFAM: RecA domain protein; KEGG: cpy:Cphy_2439 RecA protein; SMART: AAA ATPase YP_003820926.1 PFAM: regulatory protein RecX; KEGG: eel:EUBELI_01120 regulatory protein YP_003820927.1 TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; K Homology, type 1, subgroup; KEGG: cpy:Cphy_2598 RNA binding metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; KH domain protein YP_003820928.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: eel:EUBELI_02041 D-alanyl-D-alanine carboxypeptidase YP_003820929.1 KEGG: gyc:GYMC61_2734 L-arabinose isomerase; PFAM: L-arabinose isomerase YP_003820930.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cbe:Cbei_4452 carbohydrate kinase, FGGY YP_003820931.1 PFAM: class II aldolase/adducin family protein; KEGG: ere:EUBREC_0669 L-ribulose-5-phosphate 4-epimerase YP_003820932.1 KEGG: cce:Ccel_3470 regulatory protein GntR HTH; PFAM: regulatory protein GntR HTH; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein GntR HTH YP_003820933.1 PFAM: major facilitator superfamily MFS_1; KEGG: cce:Ccel_2087 major facilitator superfamily MFS_1 YP_003820934.1 KEGG: see:SNSL254_A3956 regulatory protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003820935.1 KEGG: bhy:BHWA1_01708 fructose-1,6-bisphosphatase; PFAM: fructose-16-bisphosphatase YP_003820936.1 PFAM: protein of unknown function DUF1700; KEGG: cpy:Cphy_0363 hypothetical protein YP_003820937.1 PFAM: NLP/P60 protein; SH3 type 3 domain protein; KEGG: ere:EUBREC_1937 N-acetylmuramoyl-L-alanine amidase, C-terminus YP_003820938.1 PFAM: NLP/P60 protein; KEGG: ere:EUBREC_1937 N-acetylmuramoyl-L-alanine amidase, C-terminus YP_003820939.1 KEGG: ddi:DDB_0233294 ARF/SAR superfamily protein YP_003820940.1 KEGG: san:gbs1999 rhodanese-like domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003820941.1 KEGG: cpy:Cphy_3732 phosphodiesterase; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase YP_003820942.1 KEGG: ere:EUBREC_0909 nucleic acid methylase; PFAM: RNA methylase YP_003820943.1 KEGG: ere:EUBREC_0910 cell surface protein; PFAM: peptidase C1A papain; SMART: peptidase C1A papain YP_003820944.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; KEGG: ere:EUBREC_0912 ribonuclease Ph; PFAM: Ham1 family protein YP_003820945.1 KEGG: eel:EUBELI_00401 hypothetical protein; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase YP_003820946.1 PFAM: cell wall binding repeat-containing protein; KEGG: cdl:CDR20291_2601 cell surface protein YP_003820947.1 KEGG: bfo:BRAFLDRAFT_68994 hypothetical protein YP_003820948.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpy:Cphy_2817 peptidase S8/S53 subtilisin kexin sedolisin YP_003820949.1 PFAM: NUDIX hydrolase; KEGG: cdf:CD0452 DNA repair protein YP_003820950.1 KEGG: mba:Mbar_A2719 hypothetical protein YP_003820951.1 PFAM: transcription factor CarD; KEGG: cpy:Cphy_2664 CarD family transcriptional regulator YP_003820952.1 PFAM: integrase family protein; KEGG: bai:BAA_0493 prophage LambdaBa04, site-specific recombinase, phage integrase family YP_003820954.1 KEGG: ckr:CKR_P22 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003820957.1 KEGG: tko:TK2128 phosphopantetheine adenylyltransferase YP_003820958.1 KEGG: ptm:GSPATT00004903001 hypothetical protein YP_003820959.1 KEGG: cqu:CpipJ_CPIJ009787 zinc finger protein 582 YP_003820960.1 KEGG: cms:CMS_2554 excisionase YP_003820961.1 KEGG: pgu:PGUG_01086 hypothetical protein YP_003820962.1 KEGG: ere:EUBREC_1268 hypothetical protein YP_003820963.1 KEGG: bwe:BcerKBAB4_4835 3-hydroxyacyl-CoA dehydrogenase NAD-binding YP_003820964.1 KEGG: mfs:MFS40622_1273 DNA polymerase Pol2 YP_003820965.1 PFAM: VRR-NUC domain protein; KEGG: cbk:CLL_A2280 VRR-NUC domain protein YP_003820966.1 KEGG: cbk:CLL_A2277 Soj protein YP_003820967.1 SMART: ParB domain protein nuclease; KEGG: cbk:CLL_A2276 ParB protein YP_003820968.1 PFAM: integrase family protein; KEGG: fma:FMG_1375 integrase YP_003820969.1 KEGG: edi:EDI_083900 hypothetical protein YP_003820970.1 PFAM: band 7 protein; KEGG: cbi:CLJ_0186 SPFH domain / band 7 family protein YP_003820971.1 KEGG: cdf:CD0931 hypothetical protein YP_003820972.1 KEGG: ckl:CKL_4016 hypothetical protein YP_003820973.1 KEGG: cbl:CLK_A0106 hypothetical protein YP_003820975.1 KEGG: ccu:Ccur_04120 response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein YP_003820977.1 KEGG: bce:BC1876 phage protein YP_003820978.1 KEGG: ses:SARI_02683 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease YP_003820979.1 KEGG: bbt:BBta_4866 hypothetical protein YP_003820980.1 KEGG: tet:TTHERM_00656030 CDP-alcohol phosphatidyltransferase family protein YP_003820981.1 KEGG: tad:TRIADDRAFT_61730 hypothetical protein YP_003820982.1 KEGG: oan:Oant_3781 hypothetical protein YP_003820983.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: bbe:BBR47_35630 methyltransferase YP_003820984.1 KEGG: bfu:BC1G_03290 casein kinase II beta subunit YP_003820985.1 KEGG: tva:TVAG_208460 B-box zinc finger family protein YP_003820986.1 KEGG: slg:SLGD_02260 bacteriophage YP_003820987.1 KEGG: drm:Dred_2609 phage related protein YP_003820988.1 KEGG: drm:Dred_2608 hypothetical protein YP_003820989.1 PFAM: Terminase; KEGG: drm:Dred_2607 phage terminase YP_003820990.1 KEGG: drm:Dred_2606 HK97 family phage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein YP_003820991.1 PFAM: peptidase S14 ClpP; KEGG: drm:Dred_2605 peptidase S14, ClpP YP_003820992.1 KEGG: drm:Dred_2604 hypothetical protein YP_003820993.1 KEGG: drm:Dred_2603 hypothetical protein YP_003820994.1 KEGG: drm:Dred_2602 hypothetical protein YP_003820995.1 KEGG: spa:M6_Spy1135 prophage pi2 protein 37 YP_003820996.1 KEGG: det:DET1081 hypothetical protein YP_003820997.1 TIGRFAM: phage major tail protein, phi13 family; KEGG: det:DET1080 phi13 family major tail protein YP_003820998.1 KEGG: det:DET1079 hypothetical protein YP_003820999.1 KEGG: lwe:lwe1233 phage-like protein YP_003821000.1 KEGG: det:DET1078 TP901 family tail tape measure protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region YP_003821001.1 KEGG: ere:EUBREC_1300 hypothetical protein YP_003821002.1 TIGRFAM: phage minor structural protein; KEGG: ere:EUBREC_1301 hypothetical protein YP_003821003.1 KEGG: smb:smi_0402 choline-binding protein Cbp5 YP_003821005.1 KEGG: cpy:Cphy_2974 hypothetical protein YP_003821006.1 KEGG: bln:Blon_1259 allergen V5/TPX-1 family protein YP_003821007.1 KEGG: cth:Cthe_2949 pectinesterase YP_003821008.1 KEGG: ssc:100303721 hepatitis A virus cellular receptor 1 YP_003821010.1 KEGG: lcb:LCABL_13450 hypothetical protein YP_003821011.1 KEGG: rcu:RCOM_0646040 Transmembrane BAX inhibitor motif-containing protein YP_003821012.1 PFAM: cell wall binding repeat-containing protein; KEGG: spx:SPG_0121 pneumococcal surface protein A YP_003821013.1 KEGG: mcc:716282 PHD finger protein 3 YP_003821014.1 KEGG: ddi:DDB_0191398 gelsolin-related protein YP_003821016.1 KEGG: lsp:Bsph_4692 methyl-accepting chemotaxis protein McpB (H3) YP_003821017.1 PFAM: integrase family protein; KEGG: cpy:Cphy_3145 integrase family protein YP_003821018.1 KEGG: min:Minf_1853 flagellar motor protein YP_003821019.1 KEGG: ehi:EHI_168860 hypothetical protein YP_003821020.1 SMART: AAA ATPase; KEGG: clo:HMPREF0868_1213 FtsK/SpoIIIE family protein YP_003821021.1 KEGG: pan:PODANSg3098 hypothetical protein YP_003821022.1 KEGG: tet:TTHERM_00295120 Vacuolar protein sorting-associated protein 35 containing protein YP_003821023.1 KEGG: tet:TTHERM_01276420 Dynein heavy chain family protein YP_003821024.1 KEGG: tet:TTHERM_00836630 IBR domain containing protein YP_003821025.1 PFAM: helix-turn-helix domain protein; KEGG: dsy:DSY2815 hypothetical protein YP_003821026.1 KEGG: fnu:FN1426 serine protease YP_003821027.1 KEGG: xcv:XCV0889 secreted protein YP_003821028.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: cpy:Cphy_3822 HflK protein; SMART: band 7 protein YP_003821029.1 KEGG: cpy:Cphy_3821 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein YP_003821030.1 KEGG: cpy:Cphy_3706 hypothetical protein YP_003821031.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sfu:Sfum_3514 hypothetical protein YP_003821032.1 PFAM: VanZ family protein; KEGG: cpe:CPE0070 phosphotransbutyrylase YP_003821033.1 KEGG: ere:EUBREC_1311 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain YP_003821034.1 KEGG: cpy:Cphy_3583 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_003821035.1 KEGG: aoe:Clos_0782 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_003821036.1 KEGG: cbe:Cbei_1303 hypothetical protein YP_003821037.1 PFAM: acyl-ACP thioesterase; KEGG: cpy:Cphy_0251 acyl-ACP thioesterase YP_003821038.1 PFAM: RNA binding S1 domain protein; KEGG: cpy:Cphy_0250 RNA-binding S1 domain-containing protein YP_003821039.1 PFAM: Methyltransferase type 11; KEGG: mru:mru_0779 SAM-dependent methyltransferase YP_003821040.1 KEGG: cpy:Cphy_3611 ABC transporter related; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase YP_003821041.1 KEGG: cpy:Cphy_3610 transcriptional regulator, CdaR YP_003821042.1 TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; KEGG: eel:EUBELI_01813 cell division transport system ATP-binding protein; SMART: AAA ATPase YP_003821043.1 PFAM: protein of unknown function DUF214; KEGG: eel:EUBELI_01812 cell division transport system permease protein YP_003821044.1 TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; KEGG: cpy:Cphy_3606 carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_003821045.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dsy:DSY4242 hypothetical protein YP_003821046.1 TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; KEGG: cpy:Cphy_0259 excinuclease ABC subunit B; SMART: DEAD-like helicase ; helicase domain protein YP_003821047.1 PFAM: FeoA family protein; KEGG: cpy:Cphy_3525 FeoA family protein YP_003821048.1 KEGG: cpy:Cphy_3524 ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; nucleoside recognition domain protein; Ferrous iron transport B domain protein YP_003821049.1 PFAM: protein of unknown function DUF1212; KEGG: cpy:Cphy_0908 hypothetical protein YP_003821050.1 KEGG: cpy:Cphy_0909 hypothetical protein YP_003821051.1 KEGG: cpy:Cphy_2931 hypothetical protein YP_003821052.1 KEGG: cpy:Cphy_1652 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; glycoside hydrolase family 18; SMART: Peptidoglycan-binding LysM; chitinase II YP_003821053.1 KEGG: ere:EUBREC_0368 hypothetical protein YP_003821054.1 PFAM: Radical SAM domain protein; KEGG: dth:DICTH_1830 antilisterial bacteriocin subtilosin biosynthesis protein AlbA YP_003821055.1 PFAM: Radical SAM domain protein; KEGG: dth:DICTH_0222 radical SAM domain protein YP_003821056.1 KEGG: cpy:Cphy_2930 hypothetical protein YP_003821057.1 KEGG: ere:EUBREC_1982 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein YP_003821058.1 PFAM: CoA-binding domain protein; KEGG: cth:Cthe_0422 redox-sensing transcriptional repressor REX YP_003821059.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: emi:Emin_0757 LysR family transcriptional regulator YP_003821060.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cpy:Cphy_1029 iron-containing alcohol dehydrogenase YP_003821061.1 KEGG: ctc:CTC00743 anaerobic cobalt chelatase CbiK; PFAM: anaerobic cobalt chelatase YP_003821062.1 PFAM: ApbE family lipoprotein; KEGG: cpy:Cphy_3036 ApbE family lipoprotein YP_003821063.1 PFAM: GtrA family protein; KEGG: cdl:CDR20291_2677 cell wall teichoic acid glycosylation protein YP_003821064.1 PFAM: Protein of unknown function, membrane YfhO; KEGG: eel:EUBELI_01216 hypothetical protein YP_003821065.1 KEGG: cpy:Cphy_3006 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase YP_003821066.1 PFAM: Extracellular solute-binding protein, family 7; KEGG: amt:Amet_3788 TRAP dicarboxylate transporter-DctP subunit YP_003821067.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: amt:Amet_3787 tripartite ATP-independent periplasmic transporter DctQ YP_003821068.1 KEGG: amt:Amet_3786 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_003821069.1 KEGG: amt:Amet_3785 hypothetical protein YP_003821070.1 TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; KEGG: tde:TDE1506 L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: serine dehydratase alpha chain YP_003821071.1 TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; KEGG: tde:TDE1507 L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: serine dehydratase beta chain; amino acid-binding ACT domain protein YP_003821072.1 TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; KEGG: ere:EUBREC_1520 histidinol phosphate phosphatase HisJ family; SMART: phosphoesterase PHP domain protein YP_003821073.1 KEGG: cdf:CD3286 sodium-dependent phosphate transporter; TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein YP_003821074.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: cbt:CLH_2814 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_003821075.1 KEGG: cpy:Cphy_2875 phosphoglycerate kinase; PFAM: phosphoglycerate kinase YP_003821076.1 PFAM: triosephosphate isomerase; manually curated; KEGG: cpy:Cphy_2874 triosephosphate isomerase; TIGRFAM: triosephosphate isomerase YP_003821077.1 TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: cpy:Cphy_2868 phosphoglyceromutase; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein YP_003821078.1 KEGG: fma:FMG_0248 multidrug ABC transporter; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003821079.1 KEGG: ere:EUBREC_2269 DAK2 domain/DegV family protein; TIGRFAM: degV family protein; PFAM: DegV family protein YP_003821080.1 KEGG: cpy:Cphy_1955 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003821081.1 PFAM: Lipoprotein LpqB, GerMN domain; KEGG: ere:EUBREC_1615 hypothetical protein YP_003821082.1 KEGG: cpy:Cphy_1957 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein YP_003821083.1 KEGG: eel:EUBELI_01210 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta YP_003821084.1 KEGG: cpy:Cphy_0354 hypothetical protein YP_003821085.1 PFAM: protein of unknown function DUF955; KEGG: ctc:CTC01069 GP23-like protein YP_003821086.1 KEGG: str:Sterm_3926 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003821087.1 KEGG: str:Sterm_3925 hypothetical protein YP_003821088.1 KEGG: osa:4349501 hypothetical protein YP_003821089.1 KEGG: aco:Amico_1115 hypothetical protein YP_003821090.1 KEGG: drm:Dred_1212 hypothetical protein YP_003821091.1 PFAM: major tail tube protein; KEGG: str:Sterm_0924 major tail tube protein YP_003821092.1 KEGG: lbf:LBF_2570 permease component of an ABC transporter complex YP_003821093.1 KEGG: aco:Amico_1110 phage tail protein gpX YP_003821094.1 KEGG: str:Sterm_0929 phage baseplate assembly protein V YP_003821095.1 KEGG: drm:Dred_1218 hypothetical protein YP_003821096.1 KEGG: aco:Amico_1105 gpW/GP25 family protein YP_003821097.1 PFAM: Baseplate J family protein; KEGG: aco:Amico_1104 baseplate J family protein YP_003821098.1 KEGG: drm:Dred_1221 hypothetical protein YP_003821099.1 KEGG: ere:EUBREC_2088 hypothetical protein YP_003821100.1 KEGG: hau:Haur_1518 coagulation factor 5/8 type domain-containing protein YP_003821101.1 KEGG: cbt:CLH_1708 phage tail fiber protein YP_003821102.1 KEGG: mfa:Mfla_1183 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_003821103.1 KEGG: amt:Amet_4341 hypothetical protein YP_003821104.1 KEGG: amt:Amet_2437 toxin secretion/phage lysis holin; TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis YP_003821106.1 KEGG: shi:Shel_15380 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; cell wall binding repeat-containing protein; SMART: N-acetylmuramoyl-L-alanine amidase family 2 YP_003821107.1 PFAM: Abortive infection protein; KEGG: sgo:SGO_0490 CAAX amino protease YP_003821108.1 KEGG: afl:Aflv_2026 transcriptional regulator, LacI family (HTH and periplasmic-binding domains); PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003821109.1 PFAM: extracellular solute-binding protein family 1; KEGG: cce:Ccel_3246 extracellular solute-binding protein family 1 YP_003821110.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_3245 binding-protein-dependent transport systems inner membrane component YP_003821111.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_3244 binding-protein-dependent transport systems inner membrane component YP_003821112.1 KEGG: eat:EAT1b_1273 glycoside hydrolase family 65 central catalytic; TIGRFAM: beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; Haloacid dehalogenase domain protein hydrolase YP_003821113.1 KEGG: pjd:Pjdr2_2565 hypothetical protein YP_003821114.1 KEGG: bcq:BCQ_3804 oligo-1,6-glucosidase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003821115.1 KEGG: eel:EUBELI_01209 hypothetical protein; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20 YP_003821116.1 TIGRFAM: spore protease; KEGG: cpy:Cphy_2317 germination protease; PFAM: peptidase M63 germination protease YP_003821117.1 PFAM: Stage II sporulation P family protein; KEGG: eel:EUBELI_01207 stage II sporulation protein P YP_003821118.1 KEGG: eel:EUBELI_00737 GTP-binding protein LepA; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; peptidase S60 transferrin lactoferrin YP_003821119.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; KEGG: cpy:Cphy_2314 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_003821120.1 PFAM: 3D domain protein; KEGG: swo:Swol_0756 hypothetical protein YP_003821121.1 PFAM: 3D domain protein; KEGG: bcl:ABC1928 peptidoglycan binding domain-containing protein YP_003821122.1 KEGG: cpy:Cphy_2313 heat-inducible transcription repressor HrcA; TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Winged helix-turn-helix transcription repressor, HrcA-like YP_003821123.1 PFAM: GrpE protein; KEGG: cpy:Cphy_2312 GrpE protein YP_003821124.1 KEGG: cpy:Cphy_2311 chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70 YP_003821125.1 TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; KEGG: cpy:Cphy_2310 chaperone protein DnaJ; SMART: heat shock protein DnaJ domain protein YP_003821126.1 KEGG: smb:smi_1280 choline-binding protein Cbp8 YP_003821127.1 PFAM: protein of unknown function DUF81; KEGG: shi:Shel_26650 predicted permease YP_003821128.1 KEGG: eel:EUBELI_01163 ribosomal protein L11 methyltransferase; TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase YP_003821129.1 PFAM: protein of unknown function DUF558; KEGG: eel:EUBELI_01162 hypothetical protein YP_003821130.1 KEGG: ere:EUBREC_1901 cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme; PFAM: aminotransferase class V YP_003821131.1 KEGG: eel:EUBELI_01160 thiamine biosynthesis protein ThiI; TIGRFAM: thiamine biosynthesis/tRNA modification protein ThiI; PFAM: Thiamine biosynthesis protein-like; THUMP domain protein YP_003821132.1 KEGG: eel:EUBELI_01159 hypothetical protein YP_003821133.1 TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; KEGG: ere:EUBREC_1897 MiaB-like tRNA modifying enzyme; SMART: Elongator protein 3/MiaB/NifB YP_003821134.1 PFAM: protein of unknown function DUF965; KEGG: cpy:Cphy_2298 hypothetical protein YP_003821135.1 KEGG: ere:EUBREC_1895 hypothetical protein; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold YP_003821136.1 KEGG: eel:EUBELI_00775 hypothetical protein YP_003821137.1 PFAM: ferric-uptake regulator; KEGG: cpy:Cphy_2295 ferric uptake regulator family protein YP_003821138.1 PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: cpy:Cphy_2294 beta-lactamase domain-containing protein YP_003821139.1 PFAM: aminodeoxychorismate lyase; KEGG: cpy:Cphy_2293 hypothetical protein YP_003821140.1 PFAM: Methyltransferase type 11; KEGG: ere:EUBREC_1891 O-methyltransferase YP_003821141.1 PFAM: peptidase U32; KEGG: eel:EUBELI_00780 protease YP_003821142.1 KEGG: fnu:FN1045 hypothetical protein YP_003821143.1 KEGG: ele:Elen_2282 hypothetical protein YP_003821144.1 PFAM: protein of unknown function DUF218; KEGG: eel:EUBELI_00667 hypothetical protein YP_003821145.1 PFAM: Peptidase M16C associated domain protein; peptidase M16 domain protein; KEGG: cpy:Cphy_0645 peptidase M16C associated domain-containing protein YP_003821146.1 KEGG: cpy:Cphy_0646 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein YP_003821147.1 KEGG: ere:EUBREC_1870 DNA repair and genetic recombination protein; TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO YP_003821148.1 KEGG: bid:Bind_3438 glucan biosynthesis protein D YP_003821149.1 KEGG: ere:EUBREC_1869 hypothetical protein YP_003821150.1 KEGG: cpy:Cphy_0648 glycyl-tRNA synthetase; TIGRFAM: glycyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein YP_003821151.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: bbe:BBR47_28100 hypothetical protein YP_003821152.1 PFAM: inner-membrane translocator; KEGG: cpy:Cphy_0758 inner-membrane translocator YP_003821153.1 PFAM: inner-membrane translocator; KEGG: cpy:Cphy_0757 inner-membrane translocator YP_003821154.1 KEGG: cpy:Cphy_0756 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003821155.1 PFAM: basic membrane lipoprotein; KEGG: cpy:Cphy_0755 basic membrane lipoprotein YP_003821156.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: cpy:Cphy_2404 MATE efflux family protein YP_003821157.1 TIGRFAM: pyruvate, phosphate dikinase; KEGG: eel:EUBELI_01258 pyruvate,orthophosphate dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein YP_003821158.1 KEGG: ere:EUBREC_3628 hypothetical protein YP_003821159.1 PFAM: Chromate transporter; KEGG: eel:EUBELI_20040 chromate transporter YP_003821160.1 PFAM: Chromate transporter; KEGG: eel:EUBELI_20041 chromate transporter YP_003821161.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ere:EUBREC_3630 LysR, substrate-binding YP_003821162.1 KEGG: amt:Amet_1237 di-trans-poly-cis-decaprenylcistransferase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_003821163.1 TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; KEGG: dhd:Dhaf_1166 carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane YP_003821164.1 KEGG: cbe:Cbei_2898 histidine kinase internal region; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein YP_003821165.1 KEGG: cbe:Cbei_2897 response regulator receiver protein; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003821166.1 PFAM: extracellular solute-binding protein family 1; KEGG: cbe:Cbei_2894 extracellular solute-binding protein YP_003821167.1 PFAM: extracellular solute-binding protein family 1; KEGG: gym:GYMC10_4724 extracellular solute-binding protein family 1 YP_003821168.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gym:GYMC10_4723 binding-protein-dependent transport systems inner membrane component YP_003821169.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gym:GYMC10_4722 binding-protein-dependent transport systems inner membrane component YP_003821170.1 PFAM: glycoside hydrolase family 38; Glycoside hydrolase family 38 central region; glycosyl hydrolase 38 domain protein; KEGG: tpd:Teth39_0612 alpha-mannosidase YP_003821171.1 KEGG: ere:EUBREC_1411 lactoylglutathione lyase related lyase YP_003821172.1 KEGG: ere:EUBREC_2461 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase YP_003821173.1 KEGG: shi:Shel_22260 transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003821175.1 KEGG: dps:DP2913 rubredoxin; manually curated; PFAM: Rubredoxin-type Fe(Cys)4 protein YP_003821176.1 PFAM: Ferritin Dps family protein; KEGG: dhd:Dhaf_2260 ferritin Dps family protein YP_003821177.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: cbt:CLH_1351 flavodoxin YP_003821178.1 PFAM: protein of unknown function DUF182; KEGG: ere:EUBREC_3164 hypothetical protein YP_003821179.1 KEGG: cdl:CDR20291_3033 xanthine dehydrogenase, molybdenum binding and iron-sulfur binding subunits; TIGRFAM: selenium-dependent molybdenum hydroxylase 1; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; [2Fe-2S]-binding domain protein; ferredoxin; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead YP_003821180.1 PFAM: protein of unknown function DUF523; KEGG: cpy:Cphy_1311 hypothetical protein YP_003821181.1 KEGG: cbh:CLC_0680 HDIG domain-containing protein YP_003821182.1 KEGG: cpy:Cphy_2352 aspartate kinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein YP_003821183.1 KEGG: lsp:Bsph_4407 coenzyme A disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein YP_003821184.1 PFAM: sodium:dicarboxylate symporter; KEGG: aoe:Clos_0824 sodium:dicarboxylate symporter YP_003821185.1 PFAM: aminotransferase class I and II; KEGG: fnu:FN0625 aspartate aminotransferase YP_003821186.1 KEGG: cdl:CDR20291_1847 possible transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003821187.1 KEGG: ere:EUBREC_0892 glucan 1,6-alpha-glucosidase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003821188.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbe:Cbei_0734 binding-protein-dependent transport systems inner membrane component YP_003821189.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ooe:OEOE_0810 ABC-type sugar transport system, permease component YP_003821190.1 PFAM: extracellular solute-binding protein family 1; KEGG: cbe:Cbei_0732 extracellular solute-binding protein YP_003821191.1 KEGG: csc:Csac_0684 response regulator receiver protein; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003821192.1 KEGG: pjd:Pjdr2_0675 histidine kinase; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003821193.1 KEGG: cbt:CLH_3331 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain YP_003821194.1 KEGG: cbk:CLL_A3534 oligo-1,6-glucosidase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003821195.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: cbe:Cbei_3438 maltose O-acetyltransferase YP_003821196.1 KEGG: gym:GYMC10_3604 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein YP_003821197.1 PFAM: aldo/keto reductase; KEGG: cpy:Cphy_3061 aldo/keto reductase YP_003821198.1 PFAM: protein of unknown function DUF344; KEGG: tai:Taci_0333 protein of unknown function DUF344 YP_003821199.1 PFAM: HI0933 family protein; KEGG: eel:EUBELI_00927 hypothetical protein YP_003821200.1 KEGG: ere:EUBREC_1636 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_003821201.1 TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; KEGG: cpy:Cphy_2449 hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein YP_003821202.1 PFAM: RNA binding S1 domain protein; KEGG: cpy:Cphy_2449 hydroxymethylbutenyl pyrophosphate reductase YP_003821203.1 KEGG: str:Sterm_2476 endothelin-converting enzyme 1; PFAM: peptidase M13; Peptidase M13, neprilysin-like YP_003821204.1 PFAM: FeoA family protein; KEGG: eel:EUBELI_00572 hypothetical protein YP_003821205.1 PFAM: FeoA family protein; KEGG: eel:EUBELI_00573 ferrous iron transport protein A YP_003821206.1 KEGG: cpy:Cphy_1194 ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; nucleoside recognition domain protein; Ferrous iron transport B domain protein YP_003821207.1 KEGG: eel:EUBELI_00575 hypothetical protein YP_003821208.1 PFAM: ferric-uptake regulator; KEGG: eel:EUBELI_00576 hypothetical protein YP_003821209.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dhd:Dhaf_0244 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region YP_003821210.1 PFAM: protein of unknown function DUF77; KEGG: cpy:Cphy_1150 hypothetical protein YP_003821211.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1151 binding-protein-dependent transport systems inner membrane component YP_003821212.1 KEGG: cpy:Cphy_1152 NMT1/THI5-like domain-containing protein YP_003821213.1 KEGG: cpy:Cphy_1153 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003821214.1 KEGG: smc:SmuNN2025_1444 transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR YP_003821215.1 PFAM: dihydrodipicolinate reductase; KEGG: blt:Balat_1124 hypothetical protein YP_003821216.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: cac:CAC0747 ErfK family protein YP_003821217.1 PFAM: glycoside hydrolase family 4; KEGG: cbf:CLI_0340 maltose-6'-phosphate glucosidase YP_003821218.1 PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site; KEGG: cbf:CLI_0341 PTS system, maltose/glucose-specfic, IIBC component YP_003821219.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: cbl:CLK_3456 RpiR family transcriptional regulator YP_003821220.1 PFAM: helix-turn-helix protein RpiR; KEGG: cbi:CLJ_B0324 transcriptional regulator, RpiR family YP_003821221.1 PFAM: purine or other phosphorylase family 1; KEGG: sss:SSUSC84_0655 uridine phosphorylase YP_003821222.1 KEGG: sss:SSUSC84_0656 hypothetical protein YP_003821223.1 PFAM: cobalt transport protein; KEGG: ssv:SSU98_0739 cobalt ABC transporter permease YP_003821224.1 KEGG: ttr:Tter_2110 ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase YP_003821225.1 KEGG: bwe:BcerKBAB4_5499 hypothetical protein YP_003821227.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: cbk:CLL_A1572 hypothetical protein YP_003821228.1 KEGG: eel:EUBELI_01197 hypothetical protein YP_003821229.1 KEGG: cpy:Cphy_3294 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain YP_003821230.1 KEGG: cpy:Cphy_2769 transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH YP_003821231.1 KEGG: dsh:Dshi_0600 MORN repeat-containing protein YP_003821232.1 KEGG: cpy:Cphy_1148 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003821233.1 KEGG: blo:BL0828 hypothetical protein YP_003821234.1 KEGG: pjd:Pjdr2_1164 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain YP_003821235.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cpy:Cphy_0398 oxidoreductase domain-containing protein YP_003821236.1 PFAM: extracellular solute-binding protein family 1; KEGG: bbe:BBR47_17110 probable ABC transporter substrate binding protein YP_003821237.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbe:BBR47_17120 probable ABC transporter permease YP_003821238.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbe:BBR47_17130 probable ABC transporter permease YP_003821239.1 KEGG: cyh:Cyan8802_0753 hypothetical protein YP_003821240.1 KEGG: ame:552173 similar to costa CG1708-PA YP_003821241.1 KEGG: cpy:Cphy_1652 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; chitinase II YP_003821242.1 KEGG: cpy:Cphy_1146 rhamnulokinase; TIGRFAM: rhamnulokinase; PFAM: Carbohydrate kinase, FGGY-like YP_003821243.1 TIGRFAM: L-rhamnose isomerase; KEGG: cpy:Cphy_1147 L-rhamnose isomerase; PFAM: L-rhamnose isomerase YP_003821244.1 KEGG: cbe:Cbei_0454 rhamnulose-1-phosphate aldolase; PFAM: class II aldolase/adducin family protein YP_003821245.1 KEGG: cel:K08H10.2 hypothetical protein YP_003821246.1 PFAM: Chaperonin Cpn10; KEGG: cpy:Cphy_3290 chaperonin Cpn10 YP_003821247.1 KEGG: eel:EUBELI_00520 chaperonin GroEL; TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1 YP_003821248.1 KEGG: cpy:Cphy_3288 hypothetical protein YP_003821249.1 SMART: CBS domain containing protein; TIGRFAM: inosine-5'-monophosphate dehydrogenase; KEGG: cpy:Cphy_3287 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein YP_003821250.1 KEGG: cth:Cthe_1015 hypothetical protein YP_003821251.1 PFAM: GerA spore germination protein; KEGG: cpy:Cphy_0751 GerA spore germination protein YP_003821252.1 PFAM: protein of unknown function DUF161; Protein of unknown function DUF2179; KEGG: smf:Smon_0914 protein of unknown function DUF161 YP_003821253.1 KEGG: cpy:Cphy_3276 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003821254.1 KEGG: ere:EUBREC_1180 hypothetical protein YP_003821255.1 TIGRFAM: ATP-dependent nuclease subunit B; KEGG: cpy:Cphy_3424 ATP-dependent nuclease subunit B YP_003821256.1 KEGG: cpy:Cphy_3423 recombination helicase AddA; TIGRFAM: recombination helicase AddA; PFAM: UvrD/REP helicase YP_003821257.1 KEGG: cpf:CPF_2374 selenide, water dikinase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003821258.1 TIGRFAM: cysteine desulfurase family protein; KEGG: cpy:Cphy_1489 cysteine desulfurase family protein; PFAM: aminotransferase class V YP_003821259.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cpy:Cphy_1477 LysR family transcriptional regulator YP_003821260.1 manually curated; KEGG: cpy:Cphy_1490 hypothetical protein YP_003821261.1 PFAM: amidohydrolase; KEGG: cbe:Cbei_1972 guanine deaminase YP_003821262.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: afn:Acfer_0613 xanthine/uracil/vitamin C permease YP_003821263.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: apr:Apre_1424 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding YP_003821264.1 PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: hmo:HM1_2647 dehydrogenase, fad-binding subunit-containing YP_003821265.1 PFAM: [2Fe-2S]-binding domain protein; KEGG: apr:Apre_1422 (2Fe-2S)-binding domain protein YP_003821266.1 PFAM: TspO/MBR family protein; KEGG: cac:CAC0262 tryptophan-rich sensory protein, TspO-like protein YP_003821267.1 KEGG: ere:EUBREC_2427 L-rhamnose operon transcriptional activator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003821268.1 KEGG: cpy:Cphy_2348 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003821269.1 KEGG: amt:Amet_0604 uracil-xanthine permease; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease YP_003821270.1 TIGRFAM: carbamate kinase; KEGG: vpr:Vpar_1269 aspartate/glutamate/uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003821271.1 KEGG: efa:EF2577 aspartate/ornithine carbamoyltransferase family protein; TIGRFAM: carbamoyltransferase YgeW; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region YP_003821272.1 KEGG: str:Sterm_1663 M20/DapE family protein YgeY; TIGRFAM: M20/DapE family protein YgeY; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003821273.1 KEGG: bhy:BHWA1_00066 diaminopropionate ammonia-lyase; TIGRFAM: diaminopropionate ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003821274.1 PFAM: YheO domain protein; KEGG: efa:EF2583 hypothetical protein YP_003821275.1 KEGG: bhy:BHWA1_00068 chlorohydrolase/aminohydrolase; TIGRFAM: selenium metabolism protein SsnA; PFAM: amidohydrolase YP_003821276.1 KEGG: bhy:BHWA1_00069 oxidoreductase, Fe-S subunit; TIGRFAM: selenate reductase YgfK; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003821277.1 KEGG: cpy:Cphy_1496 phenylhydantoinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase YP_003821278.1 KEGG: cbk:CLL_A0643 conserved hypothetical protein TIGR03172 YP_003821279.1 PFAM: regulatory protein LysR; KEGG: efa:EF2572 molybdenum transporter YP_003821280.1 PFAM: molybdopterin binding domain; KEGG: cpy:Cphy_1478 molybdopterin binding domain-containing protein YP_003821281.1 KEGG: ere:EUBREC_3168 molybdenum cofactor biosynthesis protein C; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region YP_003821282.1 TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; KEGG: cbt:CLH_1101 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB YP_003821283.1 PFAM: MOSC domain containing protein; KEGG: cbt:CLH_1102 MOSC domain protein YP_003821284.1 KEGG: cpy:Cphy_1481 molybdenum cofactor synthesis domain-containing protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain YP_003821285.1 TIGRFAM: selenium-dependent molybdenum hydroxylase system protein, YqeB family; KEGG: cbk:CLL_A0644 selenium-dependent molybdenum hydroxylase system protein, YqeB family YP_003821286.1 KEGG: cbt:CLH_0610 molybdopterin-guanine dinucleotide biosynthesis protein A YP_003821287.1 KEGG: dap:Dacet_0298 hypothetical protein YP_003821288.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; metal dependent phophohydrolase; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase HD sub domain; KEGG: amt:Amet_3753 diguanylate cyclase and metal dependent phosphohydrolase; SMART: GGDEF domain containing protein; metal-dependent phosphohydrolase HD region YP_003821289.1 KEGG: cpy:Cphy_1141 hypothetical protein YP_003821290.1 KEGG: dhd:Dhaf_1199 C_GCAxxG_C_C family protein; TIGRFAM: C_GCAxxG_C_C family protein; PFAM: C_GCAxxG_C_C family protein YP_003821291.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: aoe:Clos_0261 C4-dicarboxylate transporter/malic acid transport protein YP_003821292.1 KEGG: ddi:DDB_0237589 cell fusion related protein YP_003821293.1 PFAM: TfoX domain protein; KEGG: cbl:CLK_2248 TfoX domain-containing protein YP_003821294.1 KEGG: cbe:Cbei_3411 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003821295.1 PFAM: major facilitator superfamily MFS_1; KEGG: cpy:Cphy_1651 major facilitator transporter YP_003821296.1 KEGG: cbe:Cbei_3237 cell wall binding repeat-containing protein YP_003821297.1 KEGG: cpy:Cphy_2061 hypothetical protein YP_003821298.1 KEGG: mta:Moth_0254 UvrD/REP helicase YP_003821299.1 SMART: HhH-GPD family protein; iron-sulfur cluster loop; TIGRFAM: endonuclease III; KEGG: cpy:Cphy_0960 DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop YP_003821300.1 PFAM: protein of unknown function DUF567; KEGG: cpy:Cphy_1292 hypothetical protein YP_003821301.1 KEGG: mmu:12832 collagen, type V, alpha 2 YP_003821302.1 KEGG: dhd:Dhaf_3238 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003821303.1 PFAM: ABC transporter; KEGG: dhd:Dhaf_3239 ABC transporter YP_003821304.1 PFAM: branched-chain amino acid transport; KEGG: str:Sterm_0649 branched-chain amino acid transport YP_003821305.1 PFAM: AzlC family protein; KEGG: str:Sterm_0648 AzlC family protein YP_003821306.1 PFAM: NUDIX hydrolase; KEGG: clo:HMPREF0868_0753 hydrolase, NUDIX family YP_003821307.1 KEGG: ere:EUBREC_3589 hypothetical protein YP_003821308.1 KEGG: ere:EUBREC_3590 transporter; PFAM: ABC transporter related; SMART: AAA ATPase YP_003821309.1 KEGG: ere:EUBREC_3591 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003821310.1 KEGG: cce:Ccel_1433 DNA mismatch repair protein MutS domain protein; PFAM: DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein YP_003821311.1 KEGG: dsy:DSY3710 hypothetical protein YP_003821312.1 PFAM: NUDIX hydrolase; KEGG: cpy:Cphy_1034 NUDIX hydrolase YP_003821313.1 PFAM: protein of unknown function DUF970; KEGG: amt:Amet_0083 hypothetical protein YP_003821314.1 KEGG: cbe:Cbei_3434 cytidine deaminase; TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding YP_003821315.1 TIGRFAM: pyrimidine-nucleoside phosphorylase; KEGG: clo:HMPREF0868_0655 pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; Pyrimidine nucleoside phosphorylase domain YP_003821316.1 TIGRFAM: deoxyribose-phosphate aldolase; KEGG: clo:HMPREF0868_0656 deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_003821317.1 PFAM: Domain of unknown function DUF1846; KEGG: cpy:Cphy_2824 hypothetical protein YP_003821318.1 KEGG: cpy:Cphy_3439 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; SEC-C motif domain protein YP_003821319.1 KEGG: mru:mru_2068 DNA-3-methyladenine glycosylase I Tag; PFAM: methyladenine glycosylase YP_003821320.1 KEGG: cpy:Cphy_0513 hypothetical protein YP_003821321.1 PFAM: protein of unknown function DUF1653; KEGG: ere:EUBREC_0984 hypothetical protein YP_003821322.1 SMART: Excinuclease ABC C subunit domain protein; manually curated; TIGRFAM: excinuclease ABC, C subunit; KEGG: ere:EUBREC_0693 excinuclease ABC subunit C; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein YP_003821323.1 KEGG: cpy:Cphy_0328 HPr kinase; TIGRFAM: HPr(Ser) kinase/phosphatase; PFAM: HPr serine kinase domain protein YP_003821324.1 TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: cdl:CDR20291_3224 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein YP_003821325.1 PFAM: conserved hypothetical protein; KEGG: ere:EUBREC_0697 hypothetical protein YP_003821326.1 PFAM: protein of unknown function DUF199; Sporulation regulator WhiA-like; KEGG: cpy:Cphy_0332 hypothetical protein YP_003821327.1 KEGG: cpy:Cphy_0333 phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr YP_003821328.1 SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: cpy:Cphy_0335 DNA polymerase III DnaE; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type YP_003821329.1 KEGG: eel:EUBELI_01680 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase YP_003821330.1 KEGG: cbe:Cbei_3239 hypothetical protein YP_003821331.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: cpy:Cphy_2741 altronate oxidoreductase YP_003821332.1 KEGG: cpy:Cphy_2740 altronate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein YP_003821333.1 KEGG: cpy:Cphy_2742 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003821334.1 KEGG: ere:EUBREC_0059 hypothetical protein YP_003821335.1 KEGG: ere:EUBREC_0061 tRNA-dihydrouridine synthase; TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS YP_003821336.1 KEGG: ere:EUBREC_0062 transcription elongation factor GreA; TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein YP_003821337.1 KEGG: cpy:Cphy_3556 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type YP_003821338.1 PFAM: integrase family protein; KEGG: ere:EUBREC_0079 integrase/recombinase, XerC/CodV family YP_003821339.1 KEGG: ere:EUBREC_3614 hypothetical protein YP_003821340.1 KEGG: lin:lin2414 hypothetical protein; TIGRFAM: phage-type endonuclease; PFAM: YqaJ viral recombinase family YP_003821341.1 TIGRFAM: helicase, RecD/TraA family; KEGG: cth:Cthe_2249 ATP-dependent RecD/TraA family DNA helicase; SMART: AAA ATPase YP_003821342.1 KEGG: mbr:MONBRDRAFT_29712 hypothetical protein YP_003821343.1 KEGG: tte:TTE2018 DNA primase YP_003821344.1 KEGG: hba:Hbal_0170 peptidoglycan-binding domain 1 protein YP_003821345.1 KEGG: tva:TVAG_031940 erythrocyte binding protein YP_003821346.1 KEGG: eel:EUBELI_10046 collagen, type I/II/III/V/XI, alpha YP_003821347.1 KEGG: cbl:CLK_A0325 hypothetical protein YP_003821348.1 KEGG: bgl:bglu_1g09880 HAD-superfamily hydrolase, subfamily IIB YP_003821349.1 KEGG: apb:SAR116_0786 AMP-dependent synthetase and ligase YP_003821350.1 TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; BRCT domain protein; KEGG: cpy:Cphy_2927 DNA ligase, NAD-dependent; SMART: NAD-dependent DNA ligase ; BRCT domain protein YP_003821351.1 KEGG: bth:BT_2585 hypothetical protein YP_003821352.1 KEGG: rba:RB12015 hypothetical protein YP_003821353.1 KEGG: tad:TRIADDRAFT_62805 hypothetical protein YP_003821354.1 KEGG: psa:PST_0359 two-component response regulator YP_003821355.1 KEGG: dsy:DSY2815 hypothetical protein YP_003821356.1 KEGG: cth:Cthe_1159 hypothetical protein YP_003821357.1 KEGG: dgr:Dgri_GH16495 GH16495 gene product from transcript GH16495-RA YP_003821358.1 KEGG: ere:EUBREC_3535 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003821359.1 KEGG: bce:BC1561 hypothetical protein YP_003821360.1 KEGG: pdi:BDI_0980 alpha/beta family hydrolase YP_003821361.1 KEGG: ckr:CKR_2319 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003821362.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pca:Pcar_1081 oxidoreductase, short-chain alcohol dehydrogenase YP_003821363.1 KEGG: cpy:Cphy_2728 transposase YP_003821364.1 KEGG: dsy:DSY0378 hypothetical protein YP_003821365.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: dhd:Dhaf_0320 glycine cleavage T protein (aminomethyl transferase) YP_003821366.1 PFAM: major facilitator superfamily MFS_1; KEGG: mta:Moth_1315 major facilitator transporter YP_003821367.1 KEGG: bde:BDP_1700 NmrA-like protein YP_003821368.1 KEGG: cbe:Cbei_1612 SecC motif-containing protein YP_003821369.1 KEGG: cbt:CLH_2717 hypothetical protein YP_003821370.1 PFAM: nucleoside diphosphate kinase; KEGG: cth:Cthe_0716 nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase YP_003821371.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cbe:Cbei_2157 glyoxalase/bleomycin resistance protein/dioxygenase YP_003821372.1 KEGG: aoe:Clos_2127 formate--tetrahydrofolate ligase; PFAM: formate-tetrahydrofolate ligase FTHFS YP_003821373.1 KEGG: dsy:DSY0607 hypothetical protein; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_003821374.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: dsy:DSY0606 hypothetical protein YP_003821375.1 KEGG: ctc:CTC00923 formate transporter; TIGRFAM: formate/nitrite transporter; PFAM: formate/nitrite transporter YP_003821376.1 KEGG: cpy:Cphy_2765 hypothetical protein YP_003821377.1 KEGG: cth:Cthe_1384 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein YP_003821378.1 SMART: CBS domain containing protein; manually curated; KEGG: cce:Ccel_0248 DHHA2 domain protein; PFAM: DRTGG domain protein; CBS domain containing protein; DHHA2 domain protein YP_003821379.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: cth:Cthe_0373 ferredoxin-NADP(+) reductase subunit alpha YP_003821380.1 KEGG: cth:Cthe_0372 sulfide dehydrogenase (flavoprotein) subunit SudA; TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003821381.1 KEGG: cac:CAC3413 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003821382.1 KEGG: tpd:Teth39_0267 transposase IS3/IS911 family protein; manually curated; PFAM: transposase IS3/IS911 family protein YP_003821383.1 KEGG: llc:LACR_1110 hypothetical protein YP_003821385.1 KEGG: cbh:CLC_0757 AraC family transcriptional regulator; PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003821386.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: cdf:CD1506 drug/sodium antiporters YP_003821387.1 KEGG: bhy:BHWA1_00815 hypothetical protein YP_003821388.1 KEGG: sna:Snas_5923 glyoxalase/bleomycin resistance protein/dioxygenase YP_003821390.1 KEGG: lsp:Bsph_1761 hypothetical protein YP_003821392.1 KEGG: dhd:Dhaf_2638 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain YP_003821393.1 PFAM: major facilitator superfamily MFS_1; KEGG: cbe:Cbei_3764 sugar (glycoside-pentoside-hexuronide) transporter YP_003821394.1 PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: rmr:Rmar_0689 alpha-L-rhamnosidase YP_003821395.1 KEGG: cpi:Cpin_1382 fatty acid hydroxylase YP_003821396.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cpy:Cphy_1808 BFD/(2Fe-2S)-binding domain-containing protein YP_003821397.1 KEGG: cbk:CLL_A3391 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003821398.1 KEGG: cbt:CLH_3137 lipoate-protein ligase A; TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; Lipoate protein ligase-like YP_003821399.1 KEGG: cbk:CLL_A3389 dihydrolipoyl dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; biotin/lipoyl attachment domain-containing protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_003821400.1 PFAM: OsmC family protein; KEGG: dno:DNO_1109 OsmC-like family protein YP_003821401.1 SMART: Rhodanese domain protein; KEGG: cbb:CLD_3422 thiosulfate sulfurtransferase YP_003821402.1 KEGG: cbh:CLC_1191 hypothetical protein YP_003821403.1 PFAM: SNARE associated Golgi protein; KEGG: dhd:Dhaf_3864 SNARE associated Golgi protein YP_003821404.1 KEGG: fma:FMG_0304 iron-sulfur binding reductase YP_003821405.1 PFAM: SNARE associated Golgi protein; KEGG: dhd:Dhaf_3865 SNARE associated Golgi protein YP_003821406.1 KEGG: cbb:CLD_2645 hypothetical protein; TIGRFAM: C_GCAxxG_C_C family protein; PFAM: C_GCAxxG_C_C family protein YP_003821407.1 PFAM: Protein of unknown function DUF2064; glycosyl transferase family 2; KEGG: dhd:Dhaf_3860 glycosyl transferase family 2 YP_003821408.1 PFAM: aminoglycoside phosphotransferase; KEGG: fma:FMG_0302 hypothetical protein YP_003821409.1 SMART: Rhodanese domain protein; KEGG: dhd:Dhaf_3866 rhodanese domain protein YP_003821410.1 KEGG: cby:CLM_1264 ABC transporter, solute-binding protein YP_003821411.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_3294 binding-protein-dependent transport systems inner membrane component YP_003821412.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_3293 binding-protein-dependent transport systems inner membrane component YP_003821413.1 KEGG: amt:Amet_3292 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003821414.1 KEGG: ddf:DEFDS_P071 CRISPR-associated protein, Csh1 family YP_003821415.1 KEGG: stc:str0689 restriction-modification system regulatory protein, PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003821416.1 KEGG: spj:MGAS2096_Spy1128 adenine-specific methyltransferase; PFAM: MT-A70 family protein YP_003821417.1 PFAM: conserved hypothetical protein; KEGG: clo:HMPREF0868_0807 hypothetical protein YP_003821418.1 PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: clo:HMPREF0868_0806 glycosyl hydrolase family 65 central catalytic domain protein YP_003821419.1 KEGG: clo:HMPREF0868_0808 transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003821420.1 PFAM: extracellular solute-binding protein family 1; KEGG: clo:HMPREF0868_0809 bacterial extracellular solute-binding protein YP_003821421.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: clo:HMPREF0868_0810 ABC transporter, permease protein YP_003821422.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: clo:HMPREF0868_0811 ABC transporter, permease protein YP_003821423.1 PFAM: glycoside hydrolase family 31; KEGG: clo:HMPREF0868_0812 glycosyl hydrolase, family 31 YP_003821424.1 KEGG: amu:Amuc_1270 hypothetical protein YP_003821425.1 KEGG: cbe:Cbei_4363 hypothetical protein YP_003821426.1 KEGG: btl:BALH_2920 vancomycin response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003821427.1 KEGG: btl:BALH_2919 vancomycin sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003821428.1 KEGG: efa:EF2297 D-alanyl-D-alanine carboxypeptidase; PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin YP_003821429.1 KEGG: cpf:CPF_2817 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003821430.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tle:Tlet_0182 periplasmic binding protein/LacI transcriptional regulator YP_003821431.1 KEGG: hor:Hore_09550 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003821432.1 PFAM: inner-membrane translocator; KEGG: pmo:Pmob_1602 monosaccharide-transporting ATPase YP_003821433.1 PFAM: aldo/keto reductase; KEGG: tle:Tlet_0190 aldo/keto reductase YP_003821434.1 PFAM: regulatory protein TetR; KEGG: dsy:DSY2813 hypothetical protein YP_003821435.1 KEGG: cth:Cthe_1445 uncharacterized Zn-finger protein YP_003821436.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: lmc:Lm4b_00688b hypothetical protein YP_003821437.1 PFAM: PRD domain protein; CAT RNA-binding domain protein; KEGG: plu:plu0584 cryptic beta-glucoside bgl operon antiterminator YP_003821438.1 TIGRFAM: PTS system, beta-glucoside-specific IIABC subunit; PTS system, glucose subfamily, IIA subunit; KEGG: bpu:BPUM_1742 PTS family glucose/glucoside (glc) porter component IIBCA; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003821439.1 PFAM: glycoside hydrolase family 1; KEGG: bpu:BPUM_1741 glycosyl hydrolase YP_003821440.1 PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: efa:EF0455 PTS system, IIC component YP_003821441.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: efa:EF0456 PTS system, IID component YP_003821442.1 PFAM: PTS system fructose subfamily IIA component; KEGG: str:Sterm_3396 PTS system fructose subfamily IIA component YP_003821443.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: bhy:BHWA1_01759 PTS system, IIB componen YP_003821444.1 PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: bhy:BHWA1_01758 transcriptional regulator YP_003821445.1 KEGG: efa:EF0459 N-acetylmuramic acid-6-phosphate etherase; TIGRFAM: glucokinase regulatory-like protein; PFAM: sugar isomerase (SIS); ubiquitin-associated- domain-containing protein YP_003821446.1 PFAM: beta-lactamase; KEGG: bhy:BHWA1_01756 beta-lactamase YP_003821447.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ckr:CKR_2137 hypothetical protein YP_003821448.1 PFAM: aminotransferase class IV; KEGG: cbe:Cbei_2762 aminotransferase, class IV YP_003821449.1 KEGG: cbe:Cbei_2761 hypothetical protein YP_003821450.1 KEGG: rec:RHECIAT_PA0000188 probable transcriptional regulator protein, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003821451.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: sth:STH1000 cystathionine gamma-lyase YP_003821452.1 PFAM: extracellular solute-binding protein family 1; KEGG: bbe:BBR47_15480 probable ABC transport system substrate binding protein YP_003821453.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kfl:Kfla_6751 binding-protein-dependent transport systems inner membrane component YP_003821454.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbe:BBR47_15500 probable ABC transport system permease protein YP_003821455.1 PFAM: transposase IS200-family protein; KEGG: cce:Ccel_3266 transposase IS200-family protein YP_003821456.1 KEGG: cpy:Cphy_1810 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003821457.1 KEGG: set:SEN0507 hypothetical protein; TIGRFAM: allantoin catabolism protein; PFAM: Cupin 2 conserved barrel domain protein; protein of unknown function DUF861 cupin_3 YP_003821458.1 KEGG: eel:EUBELI_00183 hypothetical protein; manually curated; PFAM: Auxin Efflux Carrier YP_003821459.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; KEGG: str:Sterm_2752 PTS system, fructose-specific, IIB subunnit YP_003821460.1 KEGG: bcl:ABC0448 PTS system, fructose specific enzyme II, C component; TIGRFAM: PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC YP_003821461.1 TIGRFAM: ketose-bisphosphate aldolase; KEGG: str:Sterm_2750 ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II YP_003821462.1 KEGG: tit:Thit_2027 PTS modulated transcriptional regulator, MtlR family; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; PRD domain protein YP_003821463.1 KEGG: lcb:LCABL_03940 PTS system, IIA component; TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 YP_003821464.1 PFAM: aldo/keto reductase; KEGG: set:SEN1753 oxidoreductase YP_003821465.1 PFAM: Ribose/galactose isomerase; KEGG: cro:ROD_19581 sugar phosphate isomerase YP_003821466.1 KEGG: sth:STH955 PTS system phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr YP_003821467.1 KEGG: cdl:CDR20291_1529 superoxide dismutase [Mn]; PFAM: Manganese/iron superoxide dismutase-like YP_003821468.1 KEGG: aoe:Clos_0140 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003821469.1 KEGG: aoe:Clos_0141 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003821470.1 PFAM: protein of unknown function DUF214; KEGG: aoe:Clos_0142 hypothetical protein YP_003821471.1 PFAM: protein of unknown function DUF214; KEGG: aoe:Clos_0142 hypothetical protein YP_003821472.1 KEGG: eel:EUBELI_01628 hypothetical protein YP_003821473.1 KEGG: eel:EUBELI_01627 hypothetical protein YP_003821474.1 PFAM: protein of unknown function DUF147; KEGG: cpy:Cphy_3551 hypothetical protein YP_003821475.1 PFAM: YbbR family protein; KEGG: eel:EUBELI_01625 hypothetical protein YP_003821476.1 KEGG: ere:EUBREC_2779 phosphotransferase system HPr protein; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr YP_003821477.1 KEGG: ere:EUBREC_0358 phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region YP_003821478.1 KEGG: fsu:Fisuc_1393 hypothetical protein YP_003821479.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: str:Sterm_3662 transcriptional regulator, RpiR family YP_003821480.1 PFAM: glycoside hydrolase family 4; KEGG: str:Sterm_3661 glycoside hydrolase family 4 YP_003821481.1 KEGG: str:Sterm_3660 PTS system, glucose-like IIB subunint; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site; sugar-specific permease EIIA 1 domain YP_003821482.1 KEGG: aoe:Clos_0387 hypothetical protein YP_003821483.1 KEGG: ere:EUBREC_1476 positive regulator for rhaBAD operon; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003821484.1 TIGRFAM: D-alanine/D-alanine ligase; KEGG: cpy:Cphy_0084 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein YP_003821485.1 KEGG: cpy:Cphy_2337 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase YP_003821486.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: ele:Elen_0189 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_003821487.1 PFAM: aminotransferase class I and II; KEGG: eel:EUBELI_00628 aspartate aminotransferase YP_003821488.1 PFAM: aminotransferase class I and II; KEGG: eel:EUBELI_00629 histidinol-phosphate aminotransferase YP_003821489.1 KEGG: cpy:Cphy_3488 sporulation integral membrane protein YtvI; TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118 YP_003821490.1 PFAM: glycoside hydrolase family 25; cell wall binding repeat-containing protein; KEGG: cpy:Cphy_3109 glycoside hydrolase family protein YP_003821491.1 KEGG: cpy:Cphy_1593 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003821492.1 PFAM: protein of unknown function DUF990; KEGG: cpy:Cphy_3778 hypothetical protein YP_003821493.1 PFAM: protein of unknown function DUF990; KEGG: cpy:Cphy_3779 hypothetical protein YP_003821494.1 KEGG: cpy:Cphy_3780 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003821495.1 KEGG: cce:Ccel_0236 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003821496.1 PFAM: Heavy metal transport/detoxification protein; KEGG: fnu:FN0259 zinc-transporting ATPase YP_003821497.1 KEGG: str:Sterm_2557 cadmium-translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase YP_003821498.1 KEGG: eel:EUBELI_00431 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp YP_003821499.1 PFAM: ANTAR domain protein; KEGG: eel:EUBELI_00432 hypothetical protein YP_003821500.1 TIGRFAM: diaminopimelate epimerase; KEGG: dds:Ddes_1150 diaminopimelate epimerase; PFAM: diaminopimelate epimerase YP_003821501.1 KEGG: eel:EUBELI_00672 aspartate aminotransferase; TIGRFAM: LL-diaminopimelate aminotransferase; PFAM: aminotransferase class I and II YP_003821502.1 KEGG: eel:EUBELI_01230 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type YP_003821503.1 KEGG: eel:EUBELI_01267 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; Sporulation domain protein; SMART: cell wall hydrolase/autolysin YP_003821504.1 PFAM: protein of unknown function DUF368; KEGG: cpy:Cphy_3492 hypothetical protein YP_003821505.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cpy:Cphy_0539 peptidoglycan binding domain-containing protein YP_003821506.1 KEGG: dsh:Dshi_1537 phosphate transport system protein YP_003821507.1 KEGG: eel:EUBELI_20411 carbamoyl-phosphate synthase; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I YP_003821508.1 KEGG: eel:EUBELI_20410 carbamoyl-phosphate synthase; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein YP_003821509.1 PFAM: manganese containing catalase; KEGG: eel:EUBELI_00515 spore coat protein JC YP_003821510.1 KEGG: hmo:HM1_1324 spore coat protein CotJB YP_003821511.1 KEGG: cce:Ccel_0432 hypothetical protein YP_003821512.1 KEGG: eel:EUBELI_01837 hypothetical protein YP_003821513.1 PFAM: Uncharacterised protein family UPF0324; KEGG: fma:FMG_1288 hypothetical protein YP_003821514.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: smu:SMU.2060 LysR family transcriptional regulator YP_003821515.1 KEGG: smc:SmuNN2025_1096 hypothetical protein YP_003821516.1 PFAM: extracellular solute-binding protein family 1; KEGG: ABC-type sugar transport system, periplasmic component YP_003821517.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ttr:Tter_2645 binding-protein-dependent transport systems inner membrane component YP_003821518.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xom:XOO_2040 ABC transporter sugar permease YP_003821519.1 KEGG: tde:TDE2367 transcriptional regulator, PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003821520.1 KEGG: cpy:Cphy_0225 diacylglycerol kinase catalytic region; PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region YP_003821521.1 KEGG: eel:EUBELI_00488 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase YP_003821522.1 TIGRFAM: cysteinyl-tRNA synthetase; KEGG: eel:EUBELI_00490 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR YP_003821523.1 KEGG: cpy:Cphy_3323 ribonuclease III; PFAM: ribonuclease III; SMART: ribonuclease III YP_003821524.1 KEGG: eel:EUBELI_00492 RNA methyltransferase, TrmH family; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding YP_003821525.1 KEGG: ere:EUBREC_1535 hypothetical protein; PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein YP_003821526.1 PFAM: Type II secretion system F domain; KEGG: ere:EUBREC_1534 fimbrial assembly protein PilC YP_003821527.1 KEGG: ere:EUBREC_1533 hypothetical protein YP_003821528.1 KEGG: ere:EUBREC_1532 hypothetical protein YP_003821529.1 KEGG: lbz:LbrM17_V2.0810 OSM3-like kinesin YP_003821530.1 KEGG: ele:Elen_0098 hypothetical protein YP_003821531.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: ere:EUBREC_1529 ATPase involved in pili biogenesis, PilT-like protein; SMART: AAA ATPase YP_003821532.1 KEGG: clo:HMPREF0868_0218 L-lactate dehydrogenase; TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase YP_003821533.1 KEGG: cbl:CLK_A0017 penicillin-binding protein 1A (PBP-1a) (PBP1a); PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_003821534.1 KEGG: cno:NT01CX_1586 magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE integral membrane region; MgtE intracellular region; CBS domain containing protein YP_003821535.1 TIGRFAM: glutamyl-tRNA synthetase; KEGG: ere:EUBREC_1822 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_003821536.1 PFAM: UvrD/REP helicase; KEGG: cpy:Cphy_0222 UvrD/REP helicase YP_003821537.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: cbe:Cbei_1263 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_003821538.1 PFAM: protein of unknown function DUF1292; KEGG: ere:EUBREC_1820 hypothetical protein YP_003821539.1 KEGG: dhd:Dhaf_3917 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003821540.1 KEGG: cpy:Cphy_1487 SirA family protein; TIGRFAM: selenium metabolism protein YedF; PFAM: SirA family protein YP_003821541.1 KEGG: cpf:CPF_1674 hypothetical protein YP_003821542.1 KEGG: gwc:GWCH70_1591 RNA methylase, NOL1/NOP2/sun family; TIGRFAM: RNA methylase, NOL1/NOP2/sun family; PFAM: Fmu (Sun) domain protein YP_003821543.1 KEGG: ere:EUBREC_1817 pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase YP_003821544.1 KEGG: edi:EDI_333880 hypothetical protein YP_003821545.1 PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: cpy:Cphy_1039 hypothetical protein YP_003821546.1 KEGG: cpy:Cphy_2727 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein YP_003821547.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: cpy:Cphy_2582 serine-type D-Ala-D-Ala carboxypeptidase YP_003821548.1 PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: cpy:Cphy_0760 hypothetical protein YP_003821549.1 KEGG: gbr:Gbro_4062 hypothetical protein YP_003821550.1 PFAM: carboxyl transferase; KEGG: eel:EUBELI_00920 propionyl-CoA carboxylase YP_003821551.1 PFAM: sodium pump decarboxylase gamma subunit; KEGG: eel:EUBELI_00921 hypothetical protein YP_003821552.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: eel:EUBELI_00922 oxaloacetate decarboxylase YP_003821553.1 TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; KEGG: eel:EUBELI_00923 glutaconyl-CoA decarboxylase; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit YP_003821554.1 KEGG: eel:EUBELI_00924 oxaloacetate decarboxylase; PFAM: Conserved carboxylase region; pyruvate carboxyltransferase YP_003821555.1 KEGG: eel:EUBELI_00558 glycoside hydrolase family 73 protein; PFAM: SH3 type 3 domain protein; Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Dockerin type 1; SMART: SH3 domain protein YP_003821556.1 PFAM: cellulosome anchoring protein cohesin region; KEGG: eel:EUBELI_00559 hypothetical protein YP_003821557.1 KEGG: cpy:Cphy_3464 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003821558.1 PFAM: UvrB/UvrC protein; KEGG: eel:EUBELI_00689 hypothetical protein YP_003821559.1 PFAM: ATP:guanido phosphotransferase; KEGG: cpy:Cphy_3462 ATP:guanido phosphotransferase YP_003821560.1 KEGG: eel:EUBELI_00691 ATP-dependent Clp protease ATP-binding subunit ClpC; PFAM: ATPase AAA-2 domain protein; Clp domain protein; ATPase AAA; Clp ATPase-like; SMART: AAA ATPase YP_003821561.1 KEGG: eel:EUBELI_00692 hypothetical protein YP_003821562.1 TIGRFAM: DNA repair protein RadA; PFAM: DnaB domain protein helicase domain protein; KEGG: eel:EUBELI_00693 methylated-DNA-[protein]-cysteine S-methyltransferase; SMART: AAA ATPase YP_003821563.1 PFAM: regulatory protein TetR; KEGG: cdl:CDR20291_0508 TetR-family transcriptional regulator YP_003821564.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: cdl:CDR20291_0509 PEP-utilising kinase YP_003821565.1 KEGG: cbk:CLL_A1081 hypothetical protein YP_003821566.1 KEGG: dhd:Dhaf_3299 hypothetical protein YP_003821567.1 KEGG: ddi:DDBDRAFT_0217648 hypothetical protein YP_003821568.1 PFAM: phosphoryl transfer system HPr; KEGG: cce:Ccel_2245 HPrNtr domain-containing protein YP_003821569.1 SMART: helicase c2; Helicase-like, DEXD box c2 type; KEGG: ere:EUBREC_1516 ATP-dependent DNA-repair helicase YP_003821570.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ere:EUBREC_1517 transcriptional regulatory protein, LysR family YP_003821571.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; KEGG: adg:Adeg_1726 RNA polymerase, sigma 70 subunit, RpoD subfamily YP_003821572.1 PFAM: Phosphoglycerate mutase; KEGG: drm:Dred_1908 phosphoglycerate mutase YP_003821573.1 KEGG: syn:slr6102 type I restriction-modification system R subunit YP_003821574.1 TIGRFAM: phosphoribosylformylglycinamidine synthase; KEGG: eel:EUBELI_00567 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein YP_003821575.1 KEGG: bcu:BCAH820_3050 transcriptional regulator, MerR family protein; PFAM: regulatory protein MerR; SMART: regulatory protein MerR YP_003821576.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cbe:Cbei_4481 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003821577.1 KEGG: cpy:Cphy_2936 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_003821578.1 KEGG: hmo:HM1_2740 hypothetical protein YP_003821579.1 KEGG: cpy:Cphy_0744 ATP-dependent OLD family endonuclease YP_003821580.1 manually curated; KEGG: cpf:CPF_0251 galactoside O-acetyltransferase YP_003821581.1 KEGG: cdl:CDR20291_2899 xylulose kinase; TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like YP_003821582.1 KEGG: cbe:Cbei_2388 hypothetical protein YP_003821583.1 PFAM: L-fucose isomerase-like-like; KEGG: ere:EUBREC_2560 hypothetical protein YP_003821584.1 KEGG: cbb:CLD_3208 hypothetical protein YP_003821585.1 PFAM: integrase family protein; KEGG: cdf:CD2066 integrase YP_003821586.1 KEGG: bcx:BCA_3636 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003821587.1 TIGRFAM: excisionase; KEGG: mhu:Mhun_0748 excisionase/Xis, DNA-binding YP_003821588.1 KEGG: spo:SPAC24B11.11c Sid2p-Mob1p kinase complex YP_003821590.1 KEGG: dal:Dalk_3778 tetratricopeptide TPR_2 repeat protein YP_003821591.1 PFAM: SMC domain protein; KEGG: cce:Ccel_3310 SMC domain protein YP_003821592.1 KEGG: cce:Ccel_3309 phage protein YP_003821593.1 KEGG: cce:Ccel_3308 phage protein YP_003821594.1 KEGG: cce:Ccel_3307 type III restriction protein res subunit; PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003821595.1 PFAM: Primase 2; KEGG: cce:Ccel_3304 primase 2 YP_003821596.1 PFAM: endodeoxyribonuclease RusA; KEGG: cce:Ccel_3302 endodeoxyribonuclease RusA YP_003821597.1 KEGG: psa:PST_1768 NifR3/Smm1 family protein YP_003821598.1 KEGG: dse:Dsec_GM22994 GM22994 gene product from transcript GM22994-RA YP_003821599.1 KEGG: cts:Ctha_1753 electron transport complex, RnfABCDGE type, C subunit YP_003821600.1 KEGG: amt:Amet_4381 hypothetical protein YP_003821601.1 KEGG: ses:SARI_02683 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease YP_003821602.1 KEGG: bbt:BBta_4866 hypothetical protein YP_003821603.1 KEGG: tet:TTHERM_00656030 CDP-alcohol phosphatidyltransferase family protein YP_003821604.1 KEGG: tad:TRIADDRAFT_61730 hypothetical protein YP_003821605.1 KEGG: aac:Aaci_0567 hypothetical protein YP_003821606.1 KEGG: ctc:CTC00686 ATP-dependent nuclease subunit B YP_003821607.1 KEGG: lla:L57295 prophage pi1 protein 16 YP_003821608.1 KEGG: cbi:CLJ_B2545 hypothetical protein YP_003821609.1 KEGG: tit:Thit_1415 hypothetical protein YP_003821610.1 KEGG: tit:Thit_1416 hypothetical protein YP_003821611.1 KEGG: dol:Dole_1264 hypothetical protein YP_003821612.1 KEGG: mmq:MmarC5_0601 hypothetical protein YP_003821613.1 KEGG: cby:CLM_2530 phage protein YP_003821614.1 KEGG: bld:BLi01464 hypothetical protein; TIGRFAM: phage terminase, large subunit, PBSX family; PFAM: terminase large subunit YP_003821615.1 KEGG: cpy:Cphy_2970 SPP1 family phage portal protein; TIGRFAM: phage portal protein, SPP1 family; PFAM: Bacteriophage portal protein, SPP1 Gp6-like YP_003821616.1 KEGG: cth:Cthe_2476 SPP1 family phage head morphogenesis protein; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7 YP_003821617.1 KEGG: tte:TTE2454 pyrophosphatase YP_003821618.1 PFAM: minor structural GP20 protein; KEGG: cpy:Cphy_2965 hypothetical protein YP_003821619.1 KEGG: cbf:CLI_2414 phage coat protein YP_003821620.1 KEGG: cth:Cthe_2480 hypothetical protein YP_003821621.1 KEGG: cth:Cthe_2481 hypothetical protein YP_003821622.1 KEGG: cth:Cthe_2482 hypothetical protein YP_003821623.1 KEGG: cth:Cthe_2483 hypothetical protein YP_003821624.1 KEGG: cth:Cthe_2485 hypothetical protein YP_003821625.1 PFAM: XkdM protein, phage-like element PBSX; KEGG: cth:Cthe_2486 hypothetical protein YP_003821626.1 PFAM: XkdN-like protein; KEGG: cth:Cthe_2487 hypothetical protein YP_003821627.1 KEGG: cbi:CLJ_B1830 hypothetical protein YP_003821628.1 TIGRFAM: phage tape measure protein; KEGG: cth:Cthe_2488 phage tape measure protein YP_003821629.1 KEGG: cth:Cthe_2489 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM YP_003821630.1 KEGG: cth:Cthe_2490 hypothetical protein YP_003821631.1 KEGG: pat:Patl_1725 transcription-repair coupling factor YP_003821632.1 KEGG: cth:Cthe_2491 hypothetical protein YP_003821633.1 PFAM: Baseplate J family protein; KEGG: pjd:Pjdr2_5169 baseplate J family protein YP_003821634.1 KEGG: dhd:Dhaf_4813 hypothetical protein YP_003821635.1 PFAM: protein of unknown function DUF1565; KEGG: lmo:lmo2284 protein GP19 YP_003821636.1 KEGG: gdj:Gdia_3479 flagellar hook-associated protein FlgL YP_003821637.1 PFAM: uncharacterised protein XkdX; KEGG: cbe:Cbei_3384 hypothetical protein YP_003821638.1 KEGG: ere:EUBREC_1309 hypothetical protein; TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis YP_003821639.1 KEGG: sgo:SGO_0845 cell wall binding protein YP_003821640.1 manually curated; KEGG: ere:EUBREC_2636 glycoside hydrolase family 25 YP_003821641.1 PFAM: ATP dependent DNA ligase; KEGG: drm:Dred_2002 ATP dependent DNA ligase YP_003821642.1 KEGG: nth:Nther_0281 hypothetical protein YP_003821644.1 KEGG: spa:M6_Spy1157 hypothetical protein YP_003821645.1 KEGG: syg:sync_0611 hypothetical protein YP_003821646.1 KEGG: bsu:BSU20670 DNA-binding protein anti-repressor; phage SPbeta; TIGRFAM: phage regulatory protein, Rha family; PFAM: Phage regulatory protein, Rha-like YP_003821647.1 manually curated; KEGG: drm:Dred_0888 XRE family transcriptional regulator YP_003821648.1 KEGG: mvu:Metvu_1309 hypothetical protein YP_003821649.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpy:Cphy_0532 peptidase S8/S53 subtilisin kexin sedolisin YP_003821650.1 KEGG: cpy:Cphy_1652 peptidoglycan-binding LysM; PFAM: glycoside hydrolase family 18; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; chitinase II YP_003821651.1 manually curated; PFAM: cell wall hydrolase/autolysin; KEGG: cpy:Cphy_2818 cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_003821652.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpy:Cphy_3538 peptidase S8/S53 subtilisin kexin sedolisin YP_003821653.1 KEGG: cpy:Cphy_3277 periplasmic binding protein/LacI transcriptional regulator YP_003821654.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpy:Cphy_3538 peptidase S8/S53 subtilisin kexin sedolisin YP_003821655.1 PFAM: NHL repeat containing protein; KEGG: aac:Aaci_3061 NHL repeat containing protein YP_003821656.1 PFAM: Rubrerythrin; KEGG: rbr; rubrerythrin YP_003821657.1 KEGG: lac:LBA1473 alfa-L-rhamnosidase; manually curated; PFAM: alpha-L-rhamnosidase YP_003821658.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cdl:CDR20291_1868 glyoxalase YP_003821659.1 KEGG: cdf:CD1946 AraC family transcription regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003821660.1 KEGG: lbc:LACBIDRAFT_328568 hypothetical protein YP_003821661.1 KEGG: aoe:Clos_2752 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR YP_003821662.1 PFAM: regulatory protein TetR; KEGG: ckr:CKR_0229 hypothetical protein YP_003821663.1 PFAM: nitroreductase; KEGG: ckr:CKR_0228 hypothetical protein YP_003821664.1 KEGG: cdf:CD0203 DNA repair protein; TIGRFAM: excinuclease ABC, A subunit; PFAM: transglutaminase domain protein; ABC transporter related YP_003821665.1 PFAM: major facilitator superfamily MFS_1; KEGG: plu:plu4882 hypothetical protein YP_003821666.1 KEGG: cdf:CD0616 MerR family transcriptional regulator; PFAM: transcription activator effector binding; regulatory protein MerR; SMART: regulatory protein MerR YP_003821667.1 KEGG: cpy:Cphy_1561 regulatory protein GntR HTH; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH YP_003821668.1 KEGG: sse:Ssed_1933 hydrogenase nickel incorporation protein; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K YP_003821669.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cpy:Cphy_1564 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003821670.1 PFAM: hydrogenase expression/synthesis HypA; KEGG: cpy:Cphy_1565 hydrogenase expression/synthesis HypA YP_003821671.1 KEGG: cbl:CLK_0195 hypothetical protein YP_003821672.1 PFAM: glycosyl transferase group 1; KEGG: fma:FMG_0874 glycosyltransferase YP_003821673.1 PFAM: SNARE associated Golgi protein; KEGG: smc:SmuNN2025_1160 hypothetical protein YP_003821674.1 PFAM: glycosyl transferase group 1; KEGG: fma:FMG_0876 glycosyltransferase YP_003821675.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: cpy:Cphy_2148 DNA-repair protein YP_003821676.1 KEGG: cpy:Cphy_2149 hypothetical protein YP_003821677.1 KEGG: pjd:Pjdr2_0698 outer membrane adhesin like proteiin YP_003821678.1 KEGG: ckr:CKR_2497 hypothetical protein; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003821679.1 KEGG: ckr:CKR_2495 hypothetical protein; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver YP_003821680.1 KEGG: cce:Ccel_0191 Appr-1-p processing domain protein YP_003821681.1 PFAM: Carbohydrate kinase, FGGY-like; KEGG: ttr:Tter_2196 carbohydrate kinase FGGY YP_003821682.1 PFAM: Na+/H+ antiporter NhaC-like; KEGG: afn:Acfer_0440 Na+/H+ antiporter NhaC-like protein YP_003821683.1 PFAM: Amidohydrolase 3; KEGG: ele:Elen_2060 amidohydrolase 3 YP_003821684.1 PFAM: photosystem I assembly BtpA; KEGG: str:Sterm_3749 photosystem I assembly BtpA YP_003821685.1 PFAM: PfkB domain protein; KEGG: ctu:Ctu_38900 fructoselysine kinase YP_003821686.1 PFAM: lipolytic protein G-D-S-L family; KEGG: bln:Blon_0953 lipolytic enzyme, G-D-S-L family YP_003821687.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sfx:S4371 fructoselysine 3-epimerase YP_003821688.1 PFAM: amidohydrolase 2; KEGG: sai:Saci_1739 hypothetical protein YP_003821689.1 PFAM: protein of unknown function UPF0047; KEGG: pth:PTH_0986 hypothetical protein YP_003821690.1 PFAM: amino acid permease-associated region; KEGG: ctu:Ctu_38870 fructoselysine transporter FrlA YP_003821691.1 KEGG: apv:Apar_1063 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003821692.1 PFAM: PfkB domain protein; KEGG: ssn:SSON_3505 fructoselysine 6-kinase YP_003821693.1 KEGG: gka:GK2275 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003821694.1 PFAM: sugar isomerase (SIS); KEGG: lsg:lse_1980 sugar isomerase domain protein (SIS) YP_003821695.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cac:CAC3499 endonuclease YP_003821696.1 KEGG: ttr:Tter_2575 phophonate C-P lyase system transcriptional regulator PhnF, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003821697.1 KEGG: oih:OB0612 transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003821698.1 PFAM: sugar isomerase (SIS); KEGG: efa:EF1951 phosphosugar-binding protein YP_003821699.1 PFAM: PTS system fructose subfamily IIA component; KEGG: str:Sterm_3474 PTS system fructose subfamily IIA component YP_003821700.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: efa:EF3031 PTS system, IIB component YP_003821701.1 PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: kpn:KPN_04804 PTS permease YP_003821702.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: fnu:FN0629 PTS system, IID component YP_003821703.1 PFAM: sugar isomerase (SIS); KEGG: see:SNSL254_A4895 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) YP_003821704.1 PFAM: ROK family protein; KEGG: pjd:Pjdr2_6162 ROK family protein YP_003821705.1 KEGG: ere:EUBREC_2461 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase YP_003821706.1 PFAM: Endoribonuclease L-PSP; KEGG: cbf:CLI_2063 endoribonuclease L-PSP family protein YP_003821707.1 PFAM: regulatory protein TetR; KEGG: dal:Dalk_0727 transcriptional regulator, TetR family YP_003821708.1 PFAM: protein of unknown function DUF521; KEGG: tde:TDE2207 hypothetical protein YP_003821709.1 KEGG: tde:TDE2206 hypothetical protein YP_003821710.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cbl:CLK_1618 2-enoate reductase YP_003821711.1 PFAM: microcompartments protein; KEGG: aoe:Clos_0791 microcompartments protein YP_003821712.1 TIGRFAM: ethanolamine utilization protein, EutP; KEGG: aoe:Clos_0792 ethanolamine utilization protein, EutP YP_003821713.1 TIGRFAM: ATP/cobalamin adenosyltransferase; KEGG: aoe:Clos_0793 ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase YP_003821714.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: aoe:Clos_0794 iron-containing alcohol dehydrogenase YP_003821715.1 PFAM: microcompartments protein; KEGG: aoe:Clos_0795 microcompartments protein YP_003821716.1 PFAM: Ethanolamine utilisation EutA; KEGG: aoe:Clos_0796 reactivating factor for ethanolamine ammonia lyase YP_003821717.1 KEGG: aoe:Clos_0797 ethanolamine ammonia lyase large subunit; PFAM: Ethanolamine ammonia lyase large subunit YP_003821718.1 KEGG: aoe:Clos_0798 ethanolamine ammonia-lyase small subunit; PFAM: Ethanolamine ammonia-lyase light chain YP_003821719.1 PFAM: microcompartments protein; KEGG: aoe:Clos_0799 microcompartments protein YP_003821720.1 PFAM: microcompartments protein; KEGG: aoe:Clos_0800 microcompartments protein YP_003821721.1 KEGG: aoe:Clos_0801 acetaldehyde dehydrogenase (acetylating); TIGRFAM: acetaldehyde dehydrogenase (acetylating); PFAM: Aldehyde Dehydrogenase YP_003821722.1 PFAM: microcompartments protein; KEGG: aoe:Clos_0802 microcompartments protein YP_003821723.1 KEGG: aoe:Clos_0803 hypothetical protein YP_003821724.1 PFAM: Propanediol utilization protein; KEGG: aoe:Clos_0804 propanediol utilization protein YP_003821725.1 KEGG: aoe:Clos_0805 hypothetical protein YP_003821726.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: aoe:Clos_0806 ethanolamine utilization protein EutN/carboxysome structural protein CcmL YP_003821727.1 PFAM: Ethanolamine utilisation protein EutH; KEGG: aoe:Clos_0807 ethanolamine utilisation protein EutH YP_003821728.1 PFAM: Ethanolamine utilisation EutQ family protein; KEGG: aoe:Clos_0808 ethanolamine utilisation EutQ family protein YP_003821729.1 KEGG: afn:Acfer_0810 phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr YP_003821730.1 PFAM: protein of unknown function DUF871; KEGG: bcu:BCAH820_0882 hypothetical protein YP_003821731.1 KEGG: sgo:SGO_1647 BigG family transcription antiterminator; PFAM: PRD domain protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 YP_003821732.1 PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: bcu:BCAH820_3045 PTS system, lactose/cellobiose-specific IIA subunit YP_003821733.1 PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: sgo:SGO_1644 PTS system, cellobiose-specific IIB component YP_003821734.1 TIGRFAM: PTS system, cellobiose-specific IIC subunit; PTS system, lactose/cellobiose family IIC subunit; KEGG: cdf:CD0137 PTS system, IIC component; PFAM: phosphotransferase system EIIC YP_003821735.1 KEGG: sgo:SGO_1642 hypothetical protein YP_003821736.1 KEGG: cdf:CD0139 glycosylasparaginase; PFAM: peptidase T2 asparaginase 2 YP_003821737.1 KEGG: cdl:CDR20291_0139 peptidase; TIGRFAM: dipeptidase; PFAM: peptidase M20 YP_003821739.1 PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: smf:Smon_0914 protein of unknown function DUF161 YP_003821740.1 PFAM: SirA family protein; KEGG: smf:Smon_0721 hypothetical protein YP_003821741.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cbb:CLD_2974 LysR family transcriptional regulator YP_003821742.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: smf:Smon_0717 protein of unknown function DUF395 YeeE/YedE YP_003821743.1 PFAM: SirA family protein; KEGG: smf:Smon_0718 SirA family protein YP_003821744.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: smf:Smon_0719 protein of unknown function DUF395 YeeE/YedE YP_003821745.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: smf:Smon_0720 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003821746.1 KEGG: cpy:Cphy_1538 glycine cleavage system T protein; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel YP_003821747.1 KEGG: cpy:Cphy_1539 glycine cleavage system protein H; TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein YP_003821748.1 KEGG: cpy:Cphy_1540 glycine dehydrogenase (decarboxylating); PFAM: Glycine cleavage system P-protein-like YP_003821749.1 KEGG: cpy:Cphy_1541 glycine dehydrogenase subunit 2 YP_003821750.1 KEGG: cpy:Cphy_1542 lipoyltransferase and lipoate-protein ligase; TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; Lipoate protein ligase-like YP_003821751.1 KEGG: cpy:Cphy_1543 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_003821752.1 KEGG: cbt:CLH_2719 hypothetical protein YP_003821753.1 KEGG: bhy:BHWA1_01018 NorM, Na+-driven multidrug efflux pump; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003821754.1 KEGG: cpf:CPF_0521 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003821755.1 KEGG: mac:MA4170 hypothetical protein YP_003821756.1 PFAM: amino acid permease-associated region; KEGG: dba:Dbac_0924 amino acid permease-associated region YP_003821757.1 KEGG: pjd:Pjdr2_5018 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003821758.1 PFAM: extracellular solute-binding protein family 1; KEGG: gtn:GTNG_0404 sugar transporter sugar binding protein YP_003821759.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gtn:GTNG_0405 ABC-type sugar transport systems, permease components YP_003821760.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0400 sugar ABC transporter permease YP_003821761.1 PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: gtn:GTNG_0407 hydrolase YP_003821763.1 KEGG: efa:EF0716 hypothetical protein YP_003821764.1 PFAM: regulatory protein LysR; KEGG: dps:DP2989 molybdenum transporter YP_003821765.1 manually curated; KEGG: eel:EUBELI_20540 hypothetical protein YP_003821766.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpy:Cphy_2817 peptidase S8/S53 subtilisin kexin sedolisin YP_003821767.1 KEGG: aac:Aaci_3061 NHL repeat containing protein YP_003821768.1 KEGG: cpy:Cphy_1938 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein YP_003821769.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: amt:Amet_2059 cupin 2 domain-containing protein YP_003821770.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: cno:NT01CX_0601 D-isomer specific 2-hydroxyacid dehydrogenases YP_003821771.1 KEGG: eel:EUBELI_00509 sulfonate/nitrate/taurine transport system substrate-binding protein YP_003821772.1 KEGG: bfr:BF0198 haloacid dehalogenase-like hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_003821773.1 KEGG: ere:EUBREC_1393 hypothetical protein; TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor YP_003821774.1 PFAM: Domain of unknown function DUF1836; KEGG: ere:EUBREC_1394 hypothetical protein YP_003821775.1 KEGG: afn:Acfer_0214 endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP YP_003821776.1 TIGRFAM: FolC bifunctional protein; KEGG: eel:EUBELI_01612 folylpolyglutamate synthase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein YP_003821777.1 KEGG: ere:EUBREC_2576 hypothetical protein YP_003821778.1 PFAM: TPR repeat-containing protein; KEGG: eel:EUBELI_01610 hypothetical protein YP_003821779.1 KEGG: cpy:Cphy_0476 anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS YP_003821780.1 SMART: ATP-binding region ATPase domain protein; TIGRFAM: anti-sigma F factor; KEGG: cpy:Cphy_0477 anti-sigma F factor; PFAM: ATP-binding region ATPase domain protein YP_003821781.1 KEGG: cpy:Cphy_0478 FliA/WhiG family RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-F factor; RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein YP_003821782.1 KEGG: abo:ABO_0646 hyphotetical protein YP_003821783.1 KEGG: eel:EUBELI_01606 stage V sporulation protein AA YP_003821784.1 KEGG: ere:EUBREC_1069 hypothetical protein YP_003821785.1 PFAM: SpoVA protein; KEGG: cpy:Cphy_0479 stage V sporulation protein AC YP_003821786.1 KEGG: cpy:Cphy_0480 stage V sporulation protein AD; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein YP_003821787.1 PFAM: SpoVA protein; KEGG: ere:EUBREC_2431 sporulation protein YP_003821788.1 KEGG: ere:EUBREC_0703 glycosyltransferase family 51 candidate bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase (candidate murein polymerase); PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_003821789.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: cpy:Cphy_0499 hypothetical protein YP_003821790.1 KEGG: ere:EUBREC_2538 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein YP_003821791.1 PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: eel:EUBELI_01590 hypothetical protein YP_003821792.1 KEGG: ere:EUBREC_2536 hypothetical protein YP_003821793.1 KEGG: eel:EUBELI_01589 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_003821794.1 KEGG: ere:EUBREC_2534 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase YP_003821795.1 KEGG: tcr:508273.120 mucin TcMUCI YP_003821796.1 KEGG: cin:100182458 similar to formin homology 2 domain containing 3 YP_003821797.1 TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: cpy:Cphy_3045 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase YP_003821798.1 KEGG: ere:EUBREC_1527 amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase YP_003821799.1 KEGG: eel:EUBELI_00461 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Adenylosuccinate lyase-like; fumarate lyase YP_003821800.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cpy:Cphy_3040 LysR family transcriptional regulator YP_003821801.1 SMART: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; KEGG: cpy:Cphy_3037 adenylosuccinate synthase; PFAM: adenylosuccinate synthetase YP_003821802.1 KEGG: ere:EUBREC_2262 hypothetical protein YP_003821803.1 PFAM: cell wall binding repeat-containing protein; KEGG: shi:Shel_11330 cell wall binding protein YP_003821804.1 KEGG: cpy:Cphy_0900 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003821805.1 PFAM: CoA-binding domain protein; Rex DNA-binding domain protein; KEGG: eel:EUBELI_01381 AT-rich DNA-binding protein YP_003821806.1 KEGG: cpy:Cphy_0904 carbohydrate kinase, YjeF related protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein YP_003821807.1 TIGRFAM: alanine racemase; KEGG: cpy:Cphy_0905 alanine racemase; PFAM: alanine racemase domain protein YP_003821808.1 PFAM: PemK family protein; KEGG: eel:EUBELI_01378 hypothetical protein YP_003821809.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: cpy:Cphy_0907 hypothetical protein YP_003821810.1 PFAM: protein of unknown function DUF28; KEGG: cpy:Cphy_2507 hypothetical protein YP_003821811.1 PFAM: Transcription regulator,histidine kinase sensor-like; chemotaxis sensory transducer; KEGG: eel:EUBELI_20421 methyl-accepting chemotaxis protein YP_003821812.1 KEGG: dev:DhcVS_847 acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase YP_003821813.1 PFAM: GCN5-related N-acetyltransferase; KEGG: btk:BT9727_1896 acetyltransferase YP_003821814.1 KEGG: dhd:Dhaf_3050 oligoendopeptidase F; TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F YP_003821815.1 PFAM: nitroreductase; KEGG: cpy:Cphy_3255 nitroreductase YP_003821816.1 PFAM: heat shock protein Hsp20; KEGG: ere:EUBREC_2855 hypothetical protein YP_003821817.1 PFAM: protein of unknown function UPF0153; KEGG: cpy:Cphy_0177 hypothetical protein YP_003821818.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: cpy:Cphy_0882 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_003821819.1 PFAM: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cpy:Cphy_2287 oxidoreductase FAD/NAD(P)-binding subunit YP_003821820.1 KEGG: cpy:Cphy_2286 dihydroorotate dehydrogenase 1B; TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate oxidase YP_003821821.1 TIGRFAM: orotate phosphoribosyltransferase; KEGG: eel:EUBELI_00543 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003821822.1 KEGG: eel:EUBELI_00544 hypothetical protein YP_003821823.1 PFAM: VanZ family protein; KEGG: cpy:Cphy_3474 VanZ family protein YP_003821824.1 KEGG: cpy:Cphy_3473 hypothetical protein YP_003821825.1 KEGG: eel:EUBELI_00547 hypothetical protein YP_003821826.1 KEGG: cbt:CLH_2362 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003821827.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: eel:EUBELI_00548 phosphoribosylaminoimidazole carboxylase; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_003821828.1 TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: ere:EUBREC_1125 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003821829.1 KEGG: ere:EUBREC_1126 folate-dependent phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein YP_003821830.1 TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: eel:EUBELI_00551 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain YP_003821831.1 KEGG: cpy:Cphy_0857 cellobiose phosphorylase-like protein YP_003821832.1 KEGG: dol:Dole_1309 hypothetical protein YP_003821833.1 KEGG: ddf:DEFDS_P172 methyl-accepting chemotaxis protein YP_003821834.1 PFAM: extracellular solute-binding protein family 1; KEGG: cce:Ccel_0200 extracellular solute-binding protein family 1 YP_003821835.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0201 binding-protein-dependent transport systems inner membrane component YP_003821836.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0202 binding-protein-dependent transport systems inner membrane component YP_003821837.1 KEGG: cpy:Cphy_0865 hypothetical protein YP_003821838.1 PFAM: Protein of unknown function DUF2294; KEGG: csc:Csac_1626 hypothetical protein YP_003821839.1 KEGG: cpy:Cphy_0357 hypothetical protein YP_003821840.1 KEGG: amt:Amet_1294 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003821841.1 TIGRFAM: mannonate dehydratase; KEGG: amt:Amet_1292 mannonate dehydratase; PFAM: Mannonate dehydratase YP_003821842.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: amt:Amet_1293 mannitol dehydrogenase domain-containing protein YP_003821843.1 PFAM: arsenate reductase and related; KEGG: ere:EUBREC_0172 hypothetical protein YP_003821844.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: msu:MS0567 hypothetical protein YP_003821845.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: aoe:Clos_2168 rubredoxin-type Fe(Cys)4 protein YP_003821846.1 KEGG: eel:EUBELI_20576 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_003821847.1 PFAM: dihydrouridine synthase DuS; KEGG: cbe:Cbei_2085 dihydrouridine synthase, DuS YP_003821848.1 PFAM: amidohydrolase; KEGG: ret:RHE_PC00089 hydrolase protein YP_003821849.1 KEGG: cby:CLM_1172 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR YP_003821850.1 PFAM: basic membrane lipoprotein; KEGG: drm:Dred_2769 basic membrane lipoprotein YP_003821851.1 KEGG: nth:Nther_0421 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003821852.1 PFAM: inner-membrane translocator; KEGG: tit:Thit_0432 inner-membrane translocator YP_003821853.1 PFAM: inner-membrane translocator; KEGG: npu:Npun_R4718 inner-membrane translocator YP_003821854.1 KEGG: ele:Elen_2289 ribonucleoside-diphosphate reductase, alpha subunit; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein YP_003821855.1 PFAM: ribonucleotide reductase; KEGG: ele:Elen_2288 ribonucleoside-diphosphate reductase YP_003821856.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: tde:TDE0096 NADH oxidase YP_003821857.1 KEGG: cqu:CpipJ_CPIJ004301 endoplasmic oxidoreductin-1 YP_003821858.1 KEGG: ele:Elen_1666 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003821859.1 KEGG: dhd:Dhaf_0873 undecaprenol kinase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA YP_003821860.1 KEGG: cce:Ccel_3048 hypothetical protein YP_003821861.1 KEGG: cth:Cthe_1502 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003821862.1 KEGG: cth:Cthe_1501 ABC transporter, transmembrane region; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003821863.1 KEGG: cth:Cthe_1500 ABC transporter; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003821864.1 KEGG: cpy:Cphy_0211 electron transport complex, RnfABCDGE type, C subunit; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain YP_003821865.1 KEGG: cpy:Cphy_0212 electron transport complex, RnfABCDGE type, D subunit; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein YP_003821866.1 KEGG: cpy:Cphy_0213 FMN-binding domain-containing protein; TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein YP_003821867.1 KEGG: cpy:Cphy_0214 electron transport complex, RnfABCDGE type, E subunit; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit YP_003821868.1 KEGG: ere:EUBREC_1645 Na(+)-translocating NADH-quinone reductase subunit D; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit YP_003821869.1 KEGG: cpy:Cphy_0216 electron transport complex, RnfABCDGE type, B subunit; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein YP_003821870.1 KEGG: eel:EUBELI_00905 glucuronate isomerase; PFAM: Glucuronate isomerase YP_003821871.1 KEGG: cpy:Cphy_2742 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003821872.1 KEGG: cbe:Cbei_4129 transcriptional regulator IclR-like protein; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR YP_003821873.1 KEGG: cac:CAC2973 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase YP_003821874.1 PFAM: PfkB domain protein; KEGG: cpy:Cphy_2739 ribokinase-like domain-containing protein YP_003821875.1 PFAM: PfkB domain protein; KEGG: cpy:Cphy_0227 ribokinase-like domain-containing protein YP_003821876.1 KEGG: cbl:CLK_0131 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003821877.1 KEGG: ere:EUBREC_0219 ABC-transporter ATP-binding component; PFAM: ABC transporter related; SMART: AAA ATPase YP_003821878.1 PFAM: inner-membrane translocator; KEGG: ere:EUBREC_0218 ABC transporter integral membrane protein YP_003821879.1 PFAM: protein of unknown function DUF534; KEGG: ere:EUBREC_0217 hypothetical protein YP_003821880.1 PFAM: isochorismatase hydrolase; KEGG: dsy:DSY0954 hypothetical protein YP_003821881.1 KEGG: cpy:Cphy_2540 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_003821882.1 KEGG: ere:EUBREC_1979 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; amino acid-binding ACT domain protein YP_003821883.1 KEGG: cpy:Cphy_2538 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_003821884.1 KEGG: csc:Csac_2518 response regulator receiver protein; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn-helix, AraC domain YP_003821885.1 KEGG: ctc:CTC01848 two-component sensor kinase YesM; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein YP_003821886.1 PFAM: extracellular solute-binding protein family 1; KEGG: gym:GYMC10_3412 extracellular solute-binding protein family 1 YP_003821887.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gym:GYMC10_3411 binding-protein-dependent transport systems inner membrane component YP_003821888.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pjd:Pjdr2_2006 binding-protein-dependent transport systems inner membrane component YP_003821889.1 KEGG: rca:Rcas_2446 hypothetical protein YP_003821890.1 KEGG: cce:Ccel_1021 hypothetical protein YP_003821891.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cac:CAC0183 NagC/XylR family transcriptional regulators YP_003821892.1 KEGG: cpy:Cphy_2537 small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain protein YP_003821893.1 KEGG: apv:Apar_0136 hypothetical protein YP_003821894.1 PFAM: Radical SAM domain protein; KEGG: apv:Apar_0135 (formate-C-acetyltransferase)-activating enzyme YP_003821895.1 PFAM: basic membrane lipoprotein; KEGG: cbe:Cbei_3124 basic membrane lipoprotein YP_003821896.1 KEGG: cbe:Cbei_4146 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003821897.1 PFAM: inner-membrane translocator; KEGG: cbe:Cbei_3122 inner-membrane translocator YP_003821898.1 PFAM: inner-membrane translocator; KEGG: cbe:Cbei_4144 inner-membrane translocator YP_003821899.1 KEGG: clo:HMPREF0868_0659 cyclic nucleotide-binding domain protein; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp YP_003821900.1 KEGG: cbe:Cbei_3129 uridine phosphorylase; TIGRFAM: uridine phosphorylase; PFAM: purine or other phosphorylase family 1 YP_003821901.1 KEGG: cpy:Cphy_0752 purine nucleoside phosphorylase; TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1 YP_003821902.1 KEGG: ere:EUBREC_0294 cytidine deaminase; TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding YP_003821903.1 PFAM: Abortive infection protein; KEGG: blt:Balat_0250 hypothetical protein YP_003821904.1 KEGG: aac:Aaci_0425 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase YP_003821905.1 KEGG: cpy:Cphy_0887 hypothetical protein YP_003821906.1 KEGG: ere:EUBREC_1975 hypothetical protein YP_003821908.1 KEGG: dvi:Dvir_GJ16153 GJ16153 gene product from transcript GJ16153-RA YP_003821909.1 PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; KEGG: ere:EUBREC_3076 truncated alanine-tRNA ligase YP_003821910.1 PFAM: protein of unknown function UPF0118; KEGG: cpy:Cphy_3257 hypothetical protein YP_003821911.1 PFAM: transposase IS200-family protein; KEGG: cce:Ccel_3266 transposase IS200-family protein YP_003821912.1 KEGG: clo:HMPREF0868_0762 hypothetical protein YP_003821913.1 PFAM: peptidase S58 DmpA; KEGG: aco:Amico_1650 peptidase S58 DmpA YP_003821914.1 KEGG: cpy:Cphy_3270 hypothetical protein YP_003821915.1 KEGG: cpy:Cphy_1788 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase YP_003821916.1 KEGG: cpy:Cphy_3436 phosphotransferase domain-containing protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein YP_003821917.1 PFAM: VanW family protein; KEGG: cpf:CPF_1520 VanW-like family protein YP_003821918.1 KEGG: cpy:Cphy_3558 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate protein domain protein TPP-binding YP_003821919.1 PFAM: protein of unknown function DUF805; KEGG: dal:Dalk_0798 protein of unknown function DUF805 YP_003821920.1 KEGG: ckr:CKR_1167 hypothetical protein YP_003821921.1 KEGG: amt:Amet_1323 regulatory protein GntR, HTH; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003821922.1 KEGG: lbu:LBUL_1588 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase YP_003821923.1 KEGG: ldb:Ldb1713 hypothetical protein YP_003821924.1 KEGG: cth:Cthe_2090 hypothetical protein YP_003821925.1 PFAM: sulfatase; KEGG: cpy:Cphy_0125 sulfatase YP_003821926.1 KEGG: cbe:Cbei_4835 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003821927.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: bfs:BF3351 cysteine biosynthesis related protein; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_003821928.1 KEGG: cpr:CPR_0345 cardiolipin synthetase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase YP_003821929.1 PFAM: Collagen triple helix repeat; KEGG: bld:BLi00801 hypothetical protein YP_003821930.1 KEGG: dha:DEHA0F12210g hypothetical protein YP_003821931.1 KEGG: ckr:CKR_2827 hypothetical protein YP_003821932.1 KEGG: cbe:Cbei_2584 hypothetical protein YP_003821933.1 PFAM: Heparinase II/III family protein; KEGG: rlt:Rleg2_5337 heparinase II/III family protein YP_003821934.1 KEGG: pjd:Pjdr2_0906 histidine kinase; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein YP_003821935.1 KEGG: pjd:Pjdr2_2546 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003821936.1 PFAM: extracellular solute-binding protein family 1; KEGG: pjd:Pjdr2_0677 extracellular solute-binding protein family 1 YP_003821937.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pjd:Pjdr2_0678 binding-protein-dependent transport systems inner membrane component YP_003821938.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pjd:Pjdr2_3703 binding-protein-dependent transport systems inner membrane component YP_003821939.1 KEGG: cbe:Cbei_1236 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 42 domain 5 loop region YP_003821940.1 KEGG: bfr:BF3481 hypothetical protein YP_003821941.1 PFAM: Aldehyde Dehydrogenase; KEGG: dds:Ddes_1981 aldehyde dehydrogenase YP_003821943.1 KEGG: cpy:Cphy_0018 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003821944.1 KEGG: cpy:Cphy_0017 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003821945.1 PFAM: Patatin; KEGG: ppe:PEPE_0212 alpha-beta hydrolase family esterase YP_003821946.1 PFAM: UvrD/REP helicase; KEGG: ere:EUBREC_1395 ATP-dependent DNA helicase PcrA YP_003821947.1 KEGG: cpy:Cphy_1351 hypothetical protein YP_003821948.1 KEGG: cpy:Cphy_1355 RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: DNA methylase N-4/N-6 domain protein YP_003821949.1 KEGG: buc:BU453 exodeoxyribonuclease V 125 kDa polypeptide YP_003821950.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pdi:BDI_2177 acetyltransferase YP_003821951.1 KEGG: cce:Ccel_3124 hypothetical protein YP_003821952.1 KEGG: lmy:LM5923_1815 hypothetical protein YP_003821953.1 PFAM: ATP-binding region ATPase domain protein; KEGG: ele:Elen_1814 ATP-binding region ATPase domain protein YP_003821954.1 KEGG: mdo:100024594 similar to hCG2041257; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Gram-positive anchor YP_003821955.1 KEGG: cce:Ccel_1167 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver YP_003821956.1 KEGG: srm:SRM_02841 nitrogen regulation protein NtrC YP_003821957.1 KEGG: cch:Cag_0614 parallel beta-helix repeat-containing protein YP_003821958.1 KEGG: ere:EUBREC_2741 hypothetical protein YP_003821959.1 PFAM: S-layer domain protein; cell wall binding repeat-containing protein; KEGG: dhd:Dhaf_2434 cell wall/surface repeat protein YP_003821960.1 PFAM: Integrase catalytic region; KEGG: ckr:CKR_3047 hypothetical protein YP_003821961.1 PFAM: transposase IS3/IS911 family protein; KEGG: cce:Ccel_2372 transposase IS3/IS911 family protein YP_003821962.1 KEGG: spj:MGAS2096_Spy1105 RNA polymerase ECF-type sigma factor YP_003821963.1 KEGG: neu:NE0880 ATP-dependent DNA helicase-related protein YP_003821964.1 KEGG: ath:AT4G13880 AtRLP48 (Receptor Like Protein 48); protein binding YP_003821965.1 KEGG: ckr:CKR_0221 hypothetical protein YP_003821966.1 TIGRFAM: prevent-host-death family protein; KEGG: swo:Swol_1410 hypothetical protein YP_003821967.1 PFAM: plasmid stabilization system; KEGG: swo:Swol_1411 hypothetical protein YP_003821968.1 KEGG: spa:M6_Spy1140 portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein YP_003821969.1 PFAM: peptidase S14 ClpP; KEGG: hmo:HM1_2881 peptidase S14, ClpP YP_003821970.1 TIGRFAM: phage major capsid protein, HK97 family; KEGG: hmo:HM1_2880 phage major capsid protein, hk97 family YP_003821971.1 TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: sak:SAK_0749 hypothetical protein YP_003821972.1 KEGG: det:DET1083 head-tail adaptor YP_003821973.1 KEGG: abu:Abu_0928 adenylate/guanylate cyclase YP_003821974.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cro:ROD_10471 hypothetical protein YP_003821975.1 KEGG: eel:EUBELI_01652 methylated-DNA-[protein]-cysteine S-methyltransferase YP_003821976.1 KEGG: cpy:Cphy_0937 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003821977.1 KEGG: dae:Dtox_1920 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003821978.1 KEGG: cbe:Cbei_0536 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003821980.1 PFAM: major facilitator superfamily MFS_1; KEGG: lsp:Bsph_1346 hypothetical protein YP_003821981.1 KEGG: bwe:BcerKBAB4_1156 hypothetical protein YP_003821982.1 PFAM: amino acid permease-associated region; KEGG: cbe:Cbei_4527 amino acid permease-associated region YP_003821983.1 PFAM: protein of unknown function DUF159; KEGG: aoe:Clos_0562 hypothetical protein YP_003821984.1 KEGG: ctc:CTC00639 transcriptional regulatory protein; PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003821985.1 KEGG: cce:Ccel_1653 hypothetical protein YP_003821986.1 KEGG: cpy:Cphy_1462 hypothetical protein YP_003821987.1 KEGG: cpy:Cphy_1463 GTPase EngC YP_003821988.1 PFAM: protein of unknown function DUF129; KEGG: cdl:CDR20291_1876 hypothetical protein YP_003821989.1 KEGG: cpy:Cphy_0526 histidine kinase internal region; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein YP_003821990.1 KEGG: cpf:CPF_0555 AraC family DNA-binding response regulator; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003821991.1 PFAM: extracellular solute-binding protein family 1; KEGG: pjd:Pjdr2_1941 extracellular solute-binding protein family 1 YP_003821992.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_0527 binding-protein-dependent transport systems inner membrane component YP_003821993.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gym:GYMC10_0208 binding-protein-dependent transport systems inner membrane component YP_003821994.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cce:Ccel_0950 HI0933 family protein YP_003821995.1 PFAM: FAD dependent oxidoreductase; KEGG: pat:Patl_0892 fumarate reductase/succinate dehydrogenase flavoprotein-like YP_003821996.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: amt:Amet_2953 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_003821997.1 KEGG: aoe:Clos_0149 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003821998.1 PFAM: cobalamin synthesis protein P47K; KEGG: aoe:Clos_0148 cobalamin synthesis protein P47K YP_003821999.1 PFAM: Domain of unknown function DUF1858; KEGG: aoe:Clos_0147 hypothetical protein YP_003822000.1 KEGG: ele:Elen_2079 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003822001.1 PFAM: periplasmic binding protein; KEGG: ele:Elen_2078 periplasmic binding protein YP_003822002.1 PFAM: transport system permease protein; KEGG: ele:Elen_2077 transport system permease protein YP_003822003.1 KEGG: ele:Elen_2076 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822004.1 KEGG: cbi:CLJ_B2164 sigma-54 dependent transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase YP_003822005.1 PFAM: aminotransferase class I and II; KEGG: cbh:CLC_1908 aminotransferase, classes I and II YP_003822006.1 PFAM: sodium:dicarboxylate symporter; KEGG: cby:CLM_2180 sodium:dicarboxylate symporter family protein YP_003822007.1 KEGG: cbi:CLJ_B2167 hypothetical protein YP_003822008.1 KEGG: rde:RD1_0819 D-cysteine desulfhydrase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003822009.1 KEGG: cbe:Cbei_0595 RNA polymerase factor sigma-54; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region YP_003822010.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pjd:Pjdr2_6043 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein YP_003822011.1 TIGRFAM: phosphopentomutase; KEGG: cpe:CPE0388 phosphopentomutase; PFAM: metalloenzyme domain protein YP_003822012.1 PFAM: M trans-acting positive regulator; KEGG: str:Sterm_0134 transcriptional antiterminator, BglG YP_003822013.1 PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site; KEGG: pmr:PMI2982 PTS system, EIIBC component YP_003822014.1 PFAM: fumarate lyase; Adenylosuccinate lyase-like; KEGG: bcl:ABC2086 adenylosuccinate lyase YP_003822015.1 PFAM: glycoside hydrolase family 4; KEGG: str:Sterm_3066 maltose-6'-phosphate glucosidase YP_003822016.1 KEGG: gwc:GWCH70_2217 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_003822017.1 KEGG: bhy:BHWA1_02099 hydrolase (HAD superfamily); TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_003822018.1 KEGG: esi:Exig_0433 hypothetical protein YP_003822019.1 KEGG: gym:GYMC10_1246 ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822020.1 PFAM: inner-membrane translocator; KEGG: gym:GYMC10_1247 inner-membrane translocator YP_003822021.1 TIGRFAM: 5-methylthioribose kinase; KEGG: cce:Ccel_1288 5-methylthioribose kinase; PFAM: aminoglycoside phosphotransferase YP_003822022.1 TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; KEGG: cce:Ccel_1289 translation initiation factor, aIF-2BI family; PFAM: initiation factor 2B related YP_003822023.1 KEGG: csc:Csac_0990 DeoR family transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_003822024.1 PFAM: class II aldolase/adducin family protein; KEGG: cce:Ccel_1290 class II aldolase/adducin family protein YP_003822025.1 PFAM: Aldehyde Dehydrogenase; KEGG: cbk:CLL_A2134 ethanolamine utilization protein EutE YP_003822026.1 PFAM: microcompartments protein; KEGG: cpy:Cphy_1180 microcompartments protein YP_003822027.1 PFAM: microcompartments protein; KEGG: cpy:Cphy_1182 microcompartments protein YP_003822028.1 PFAM: microcompartments protein; KEGG: vei:Veis_0664 microcompartments protein YP_003822029.1 PFAM: microcompartments protein; KEGG: cpy:Cphy_1182 microcompartments protein YP_003822030.1 PFAM: Propanediol utilization protein; KEGG: dhd:Dhaf_4034 propanediol utilization protein YP_003822031.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: amt:Amet_4575 ethanolamine utilization protein EutN/carboxysome structural protein CcmL YP_003822032.1 PFAM: extracellular solute-binding protein family 1; KEGG: pmo:Pmob_0640 extracellular solute-binding protein YP_003822033.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: lsa:LSA0312 coenzyme A disulfide reductase YP_003822034.1 PFAM: coenzyme A transferase; KEGG: fpl:Ferp_1164 coenzyme A transferase YP_003822035.1 PFAM: coenzyme A transferase; KEGG: oca:OCAR_6775 3-oxoadipate:succinyl-CoA transferase subunit B YP_003822036.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: msu:MS1802 EutG protein YP_003822037.1 KEGG: oan:Oant_4368 glycerone kinase; PFAM: Dak kinase YP_003822038.1 PFAM: Dak phosphatase; KEGG: oan:Oant_4367 Dak phosphatase YP_003822040.1 PFAM: protein of unknown function DUF541; KEGG: csc:Csac_1122 hypothetical protein YP_003822041.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpy:Cphy_2817 peptidase S8/S53 subtilisin kexin sedolisin YP_003822042.1 KEGG: kla:KLLA0C19437g hypothetical protein YP_003822043.1 PFAM: regulatory protein TetR; KEGG: bld:BLi02242 hypothetical protein YP_003822044.1 KEGG: ele:Elen_2396 hypothetical protein YP_003822045.1 KEGG: oih:OB0348 hypothetical protein YP_003822046.1 PFAM: Radical SAM domain protein; KEGG: dsy:DSY2535 hypothetical protein YP_003822047.1 KEGG: cpy:Cphy_0819 hypothetical protein YP_003822048.1 KEGG: cpy:Cphy_2724 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit YP_003822049.1 KEGG: cpy:Cphy_2723 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein YP_003822050.1 SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; TIGRFAM: DNA topoisomerase I; KEGG: eel:EUBELI_00803 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein YP_003822051.1 KEGG: cpy:Cphy_2721 transcriptional repressor CodY; TIGRFAM: GTP-sensing transcriptional pleiotropic repressor CodY; PFAM: Helix-turn-helix CodY domain protein; GTP-sensing transcriptional pleiotropic repressor CodY YP_003822052.1 KEGG: ere:EUBREC_1775 ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2 YP_003822053.1 KEGG: cpy:Cphy_2679 translation elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein YP_003822054.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1996 binding-protein-dependent transport systems inner membrane component YP_003822055.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dhd:Dhaf_3019 binding-protein-dependent transport systems inner membrane component YP_003822056.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dhd:Dhaf_3018 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase YP_003822057.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: dhd:Dhaf_3017 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase YP_003822058.1 PFAM: extracellular solute-binding protein family 5; KEGG: dhd:Dhaf_3016 extracellular solute-binding protein family 5 YP_003822059.1 PFAM: extracellular solute-binding protein family 5; KEGG: dhd:Dhaf_3016 extracellular solute-binding protein family 5 YP_003822060.1 KEGG: ere:EUBREC_1771 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003822061.1 KEGG: cpy:Cphy_2625 ribosome recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor YP_003822062.1 TIGRFAM: undecaprenyl diphosphate synthase; KEGG: eel:EUBELI_00850 undecaprenyl pyrophosphate synthetase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_003822063.1 PFAM: phosphatidate cytidylyltransferase; KEGG: cpy:Cphy_2623 phosphatidate cytidylyltransferase YP_003822064.1 TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: cpy:Cphy_2622 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein YP_003822065.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: ere:EUBREC_1766 membrane-associated Zn-dependent protease; SMART: PDZ/DHR/GLGF domain protein YP_003822066.1 KEGG: ere:EUBREC_1765 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein YP_003822067.1 TIGRFAM: DNA polymerase III, alpha subunit; DNA polymerase III, epsilon subunit; PFAM: DNA polymerase III alpha subunit; Exonuclease RNase T and DNA polymerase III; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: ere:EUBREC_1764 DNA polymerase III, alpha subunit; SMART: Exonuclease; phosphoesterase PHP domain protein YP_003822068.1 KEGG: cbk:CLL_A2176 hypothetical protein YP_003822069.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cbe:Cbei_3076 diguanylate cyclase; SMART: GGDEF domain containing protein YP_003822070.1 KEGG: ere:EUBREC_1443 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase YP_003822071.1 KEGG: ckr:CKR_2827 hypothetical protein YP_003822072.1 PFAM: cytochrome P450; KEGG: cby:CLM_1194 cytochrome P450 YP_003822073.1 PFAM: acylphosphatase; KEGG: ere:EUBREC_0200 acylphosphatase YP_003822074.1 KEGG: aoe:Clos_1264 hypothetical protein YP_003822075.1 PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA gyrase subunit B domain protein; KEGG: ere:EUBREC_2280 DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein YP_003822076.1 SMART: DNA gyrase/topoisomerase IV subunit A; manually curated; KEGG: eel:EUBELI_01218 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_003822077.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; KEGG: ere:EUBREC_2152 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_003822078.1 KEGG: cbe:Cbei_4465 aldose 1-epimerase; PFAM: Aldose 1-epimerase YP_003822079.1 PFAM: protein of unknown function DUF6 transmembrane; protein of unknown function DUF1700; KEGG: ctc:CTC00148 transporter YP_003822080.1 PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; KEGG: eel:EUBELI_01246 DNA topoisomerase III; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein YP_003822081.1 KEGG: eel:EUBELI_01244 UDP-N-acetylglucosamine pyrophosphorylase YP_003822082.1 PFAM: sodium:neurotransmitter symporter; KEGG: cpy:Cphy_1758 sodium:neurotransmitter symporter YP_003822083.1 KEGG: eel:EUBELI_01256 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003822084.1 KEGG: cbe:Cbei_3958 hypothetical protein YP_003822085.1 KEGG: cpy:Cphy_2804 hypothetical protein YP_003822086.1 TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; KEGG: eel:EUBELI_01072 DNA polymerase I; SMART: DNA-directed DNA polymerase; 5'-3' exonuclease YP_003822087.1 KEGG: ere:EUBREC_1561 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_003822088.1 manually curated; KEGG: eel:EUBELI_01069 ribonuclease Z YP_003822089.1 PFAM: amino acid-binding ACT domain protein; KEGG: bde:BDP_1787 ACT domain-containing protein YP_003822090.1 PFAM: protein of unknown function DUF711; KEGG: mla:Mlab_1030 hypothetical protein YP_003822091.1 PFAM: Phosphoglycerate mutase; KEGG: cpy:Cphy_1250 phosphoglycerate mutase YP_003822092.1 KEGG: cpy:Cphy_3723 hypothetical protein YP_003822093.1 KEGG: cpy:Cphy_0823 hypothetical protein YP_003822094.1 PFAM: NUDIX hydrolase; KEGG: bhy:BHWA1_01604 NUDIX hydrolase YP_003822095.1 PFAM: protein of unknown function DUF795; KEGG: cpy:Cphy_1325 hypothetical protein YP_003822096.1 PFAM: Propanediol utilization protein; KEGG: sth:STH2526 hypothetical protein YP_003822097.1 KEGG: eel:EUBELI_01064 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase YP_003822098.1 PFAM: protein of unknown function DUF177; KEGG: cpy:Cphy_1328 hypothetical protein YP_003822099.1 KEGG: ere:EUBREC_1496 hypothetical protein; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein YP_003822100.1 KEGG: cno:NT01CX_1495 transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003822101.1 TIGRFAM: deoxyribose-phosphate aldolase; KEGG: cno:NT01CX_1496 deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_003822102.1 KEGG: msu:MS0283 ribokinase; TIGRFAM: ribokinase; PFAM: PfkB domain protein YP_003822103.1 PFAM: RbsD or FucU transport; KEGG: lhk:LHK_01711 RbsD YP_003822104.1 KEGG: vex:VEA_000341 ribose ABC transport system ATP-binding protein RbsA; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822105.1 PFAM: inner-membrane translocator; KEGG: cbk:CLL_A1530 ribose transport system permease protein RbsC YP_003822106.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tnp:Tnap_1795 periplasmic binding protein/LacI transcriptional regulator YP_003822107.1 TIGRFAM: V-type H(+)-translocating pyrophosphatase; KEGG: amt:Amet_3574 membrane-bound proton-translocating pyrophosphatase; PFAM: Inorganic H pyrophosphatase YP_003822108.1 KEGG: dhd:Dhaf_3149 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR YP_003822109.1 KEGG: dhd:Dhaf_3150 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822110.1 PFAM: ABC transporter; KEGG: dhd:Dhaf_3151 ABC transporter YP_003822111.1 KEGG: cpy:Cphy_3282 two component AraC family transcriptional regulator; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003822112.1 PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; KEGG: cpy:Cphy_3281 signal transduction histidine kinase, LytS YP_003822113.1 KEGG: cpy:Cphy_3280 ABC-type sugar transport system ATPase component-like protein YP_003822114.1 KEGG: cpy:Cphy_3279 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822115.1 PFAM: inner-membrane translocator; KEGG: cpy:Cphy_3278 monosaccharide-transporting ATPase YP_003822116.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cpy:Cphy_3277 periplasmic binding protein/LacI transcriptional regulator YP_003822117.1 PFAM: ROK family protein; KEGG: tte:TTE0761 transcriptional regulator YP_003822118.1 KEGG: afn:Acfer_1426 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003822119.1 KEGG: ere:EUBREC_1498 fatty acid/phospholipid synthesis protein PlsX; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein YP_003822120.1 KEGG: cpy:Cphy_2446 acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding YP_003822121.1 SMART: ribonuclease III; double-stranded RNA binding domain protein; TIGRFAM: ribonuclease III; KEGG: ere:EUBREC_1500 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein YP_003822122.1 KEGG: ere:EUBREC_1501 chromosome segregation protein SMC; TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein YP_003822123.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: cpy:Cphy_2442 signal recognition particle-docking protein FtsY; SMART: AAA ATPase YP_003822124.1 KEGG: ere:EUBREC_1503 threonine dehydratase; TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; amino acid-binding ACT domain protein YP_003822125.1 PFAM: Radical SAM domain protein; KEGG: str:Sterm_0376 radical SAM domain protein YP_003822126.1 KEGG: cpy:Cphy_0293 two component AraC family transcriptional regulator; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003822127.1 KEGG: cpf:CPF_0554 sensor histidine kinase; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein YP_003822128.1 PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_0291 extracellular solute-binding protein YP_003822129.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_0290 binding-protein-dependent transport systems inner membrane component YP_003822130.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00317 sugar ABC transporter, permease protein YP_003822131.1 PFAM: glycosyl hydrolase family 88; KEGG: cpy:Cphy_0934 glycosy hydrolase family protein YP_003822132.1 PFAM: sulfatase; KEGG: pjd:Pjdr2_0648 sulfatase YP_003822133.1 PFAM: protein of unknown function DUF1232; KEGG: cce:Ccel_1552 protein of unknown function DUF1232 YP_003822134.1 KEGG: cbe:Cbei_4580 LytTR family two component transcriptional regulator; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver YP_003822135.1 KEGG: cbe:Cbei_4579 sensor histidine kinase-like protein YP_003822136.1 KEGG: sha:SH0996 accessory gene regulator B (AgrB); PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B YP_003822137.1 KEGG: abu:Abu_1382 exodeoxyribonuclease V, alpha subunit YP_003822138.1 KEGG: hmg:100201308 similar to CG11123 CG11123-PA YP_003822139.1 KEGG: edi:EDI_088510 hypothetical protein YP_003822140.1 PFAM: sigma-54 factor interaction domain-containing protein; PTS system fructose subfamily IIA component; KEGG: cbk:CLL_A3361 transcriptional regulatory protein LevR YP_003822141.1 PFAM: PTS system fructose subfamily IIA component; KEGG: lwe:lwe0743 sugar phosphotransferasesystem component IIA YP_003822142.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: cdf:CD0492 PTS system, IIB component YP_003822143.1 PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: str:Sterm_3024 phosphotransferase system PTS sorbose-specific IIC subunit YP_003822144.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: cbk:CLL_A3357 PTS system mannose/fructose/sorbose family IID component YP_003822145.1 PFAM: photosystem I assembly BtpA; KEGG: bmq:BMQ_1512 hypothetical protein YP_003822146.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cbt:CLH_1632 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_003822147.1 PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; KEGG: cpy:Cphy_2902 fibronectin-binding A domain-containing protein YP_003822148.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: ere:EUBREC_1672 hypothetical protein YP_003822149.1 SMART: guanylate kinase/L-type calcium channel region; TIGRFAM: guanylate kinase; KEGG: eel:EUBELI_01128 guanylate kinase; PFAM: guanylate kinase YP_003822150.1 KEGG: cpy:Cphy_2879 DNA-directed RNA polymerase, omega subunit; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6 YP_003822151.1 TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: eel:EUBELI_01124 2-alkenal reductase; SMART: Elongator protein 3/MiaB/NifB YP_003822152.1 KEGG: eel:EUBELI_01123 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_003822153.1 KEGG: cbe:Cbei_4894 competence damage-inducible protein A; TIGRFAM: competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain YP_003822154.1 KEGG: eel:EUBELI_00951 hypothetical protein YP_003822155.1 KEGG: eel:EUBELI_00952 hypothetical protein YP_003822156.1 KEGG: eel:EUBELI_00953 hypothetical protein YP_003822157.1 PFAM: Sporulation protein YtfJ; KEGG: eel:EUBELI_00954 hypothetical protein YP_003822158.1 KEGG: eel:EUBELI_00955 hypothetical protein YP_003822159.1 KEGG: eel:EUBELI_00956 hypothetical protein; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28 YP_003822160.1 PFAM: protein of unknown function DUF322; KEGG: cpy:Cphy_2892 hypothetical protein YP_003822161.1 KEGG: cpy:Cphy_2891 Dak phosphatase; TIGRFAM: DAK2 domain fusion protein YloV; PFAM: Dak phosphatase YP_003822162.1 TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; KEGG: cpy:Cphy_2890 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase ; helicase domain protein YP_003822163.1 PFAM: protein of unknown function DUF975; KEGG: pjd:Pjdr2_0672 protein of unknown function DUF975 YP_003822164.1 TIGRFAM: uridine kinase; KEGG: cpy:Cphy_2386 uridine kinase YP_003822165.1 PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cpy:Cphy_1320 small acid-soluble spore protein alpha/beta type YP_003822166.1 KEGG: ere:EUBREC_1677 site-specific DNA-methyltransferase (adenine-specific); TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein YP_003822167.1 TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; KEGG: eel:EUBELI_01035 pantetheine-phosphate adenylyltransferase; PFAM: cytidylyltransferase YP_003822168.1 KEGG: eel:EUBELI_01034 hypothetical protein YP_003822169.1 KEGG: cpy:Cphy_1324 nucleoside recognition domain-containing protein YP_003822170.1 PFAM: Peptidase M23; KEGG: bpf:BpOF4_04975 hypothetical protein YP_003822171.1 PFAM: Fmu (Sun) domain protein; KEGG: eel:EUBELI_01031 hypothetical protein YP_003822172.1 KEGG: cpy:Cphy_2791 pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003822173.1 KEGG: cpy:Cphy_2790 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003822174.1 KEGG: ere:EUBREC_1682 Fe-S oxidoreductase; PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003822175.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ckr:CKR_2282 hypothetical protein YP_003822176.1 KEGG: eel:EUBELI_01028 hypothetical protein YP_003822177.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: cpy:Cphy_2789 RluA family pseudouridine synthase; SMART: RNA-binding S4 domain protein YP_003822178.1 PFAM: Recombination protein U; KEGG: cpy:Cphy_2788 recombination protein U YP_003822179.1 TIGRFAM: histidyl-tRNA synthetase 2; KEGG: cpy:Cphy_2787 histidine--tRNA ligase; PFAM: tRNA synthetase class II (G H P and S) YP_003822180.1 TIGRFAM: ATP phosphoribosyltransferase; KEGG: ere:EUBREC_1686 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region YP_003822181.1 TIGRFAM: histidinol dehydrogenase; KEGG: ere:EUBREC_1687 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase YP_003822182.1 KEGG: cpy:Cphy_2784 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase YP_003822183.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: cpy:Cphy_2783 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein YP_003822184.1 KEGG: cpy:Cphy_2782 phosphoribosyl-ATP diphosphatase; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis protein; Phosphoribosyl-ATP pyrophosphohydrolase-like YP_003822185.1 KEGG: sgo:SGO_0803 hypothetical protein YP_003822186.1 TIGRFAM: peptidase T; KEGG: cpy:Cphy_3349 peptidase T; PFAM: peptidase dimerisation domain protein; peptidase M20 YP_003822187.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: tit:Thit_0154 PTS IIA-like nitrogen-regulatory protein PtsN YP_003822188.1 PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: lin:lin2201 hypothetical protein YP_003822189.1 PFAM: PTS system Galactitol-specific IIC component; KEGG: str:Sterm_1734 PTS system galactitol-specific IIC component YP_003822190.1 PFAM: PRD domain protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: bha:BH0193 hypothetical protein YP_003822191.1 PFAM: class II aldolase/adducin family protein; KEGG: cdl:CDR20291_2175 sugar phosphate aldolase YP_003822192.1 KEGG: tde:TDE2360 dihydroxyacetone kinase family protein; PFAM: Dak kinase YP_003822193.1 PFAM: Dak phosphatase; KEGG: tde:TDE2359 DAK2 domain-containing protein YP_003822194.1 PFAM: protein of unknown function DUF1275; KEGG: cac:CAC3362 hypothetical protein YP_003822195.1 KEGG: cbt:CLH_0618 hypothetical protein YP_003822196.1 KEGG: cpy:Cphy_2565 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003822197.1 PFAM: Protein of unknown function DUF2344; KEGG: ere:EUBREC_1691 Fe-S oxidoreductase YP_003822198.1 PFAM: RNA-binding protein AU-1/Ribonuclease E/G; KEGG: cpy:Cphy_2563 ribonuclease YP_003822199.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: ere:EUBREC_2802 potassium transporter peripheral membrane component YP_003822200.1 PFAM: cation transporter; KEGG: ere:EUBREC_2803 potassium uptake protein YP_003822202.1 KEGG: cpy:Cphy_2551 ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21 YP_003822203.1 KEGG: cpy:Cphy_2550 hypothetical protein; manually curated; PFAM: protein of unknown function DUF464 YP_003822204.1 KEGG: cpy:Cphy_2549 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27 YP_003822205.1 KEGG: eel:EUBELI_01014 GTP-binding protein; TIGRFAM: GTP-binding protein Obg/CgtA; Obg family GTPase CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP1/OBG domain protein YP_003822206.1 PFAM: protein of unknown function UPF0044; KEGG: cpy:Cphy_2547 hypothetical protein YP_003822207.1 TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; KEGG: cpy:Cphy_2546 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_003822208.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: eel:EUBELI_01011 nicotinate-nucleotide adenylyltransferase; SMART: metal-dependent phosphohydrolase HD region YP_003822209.1 KEGG: eel:EUBELI_01010 hypothetical protein; TIGRFAM: iojap-like protein; PFAM: Iojap-related protein YP_003822210.1 KEGG: eel:EUBELI_01008 repressor LexA; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; Peptidase S24/S26A/S26B, conserved region YP_003822211.1 KEGG: ere:EUBREC_1702 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM YP_003822212.1 KEGG: cbk:CLL_A1735 tetracycline resistance protein TetP, contain GTP-ase domain; TIGRFAM: small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain IV; elongation factor G domain protein YP_003822213.1 PFAM: integrase family protein; KEGG: ere:EUBREC_1704 phage integrase family protein YP_003822214.1 KEGG: dsy:DSY1255 hypothetical protein YP_003822215.1 TIGRFAM: amidase, hydantoinase/carbamoylase family; KEGG: cbe:Cbei_1944 allantoate amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003822216.1 PFAM: major facilitator superfamily MFS_1; KEGG: gym:GYMC10_3535 H+ antiporter protein YP_003822217.1 KEGG: ere:EUBREC_2613 hypothetical protein; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator YP_003822218.1 KEGG: mbt:JTY_2200 hypothetical protein YP_003822219.1 KEGG: lwe:lwe0631 Cof family hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_003822220.1 KEGG: ere:EUBREC_0825 D-fructose-6-phosphate amidotransferase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II YP_003822221.1 KEGG: str:Sterm_0355 phosphopentomutase; PFAM: metalloenzyme domain protein YP_003822222.1 PFAM: alanine racemase domain protein; KEGG: str:Sterm_0356 alanine racemase domain protein YP_003822223.1 KEGG: bld:BLi00723 hypothetical protein YP_003822224.1 PFAM: aryldialkylphosphatase; KEGG: bld:BLi00722 hypothetical protein YP_003822225.1 KEGG: str:Sterm_0358 hypothetical protein YP_003822226.1 PFAM: Protein of unknown function, YhfT; KEGG: cpo:COPRO5265_0038 hypothetical protein YP_003822227.1 KEGG: bha:BH0588 hypothetical protein YP_003822228.1 KEGG: tex:Teth514_0174 PRD domain-containing protein YP_003822229.1 KEGG: tex:Teth514_0173 hypothetical protein YP_003822230.1 KEGG: eel:EUBELI_01147 cytidylate kinase YP_003822231.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: eel:EUBELI_01149 lysozyme; SMART: RNA-binding S4 domain protein YP_003822232.1 KEGG: eel:EUBELI_01150 signal peptidase II; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II YP_003822233.1 TIGRFAM: 3-dehydroquinate synthase; KEGG: eel:EUBELI_01151 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase YP_003822234.1 PFAM: protein of unknown function DUF552; KEGG: eel:EUBELI_01152 hypothetical protein YP_003822235.1 PFAM: alanine racemase domain protein; KEGG: cpy:Cphy_2362 alanine racemase domain-containing protein YP_003822236.1 KEGG: eel:EUBELI_01154 hypothetical protein YP_003822237.1 KEGG: ere:EUBREC_1736 hypothetical protein YP_003822238.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: cpy:Cphy_2366 serine-type D-Ala-D-Ala carboxypeptidase YP_003822239.1 TIGRFAM: methylglyoxal synthase; KEGG: cpy:Cphy_2367 methylglyoxal synthase; PFAM: MGS domain protein YP_003822240.1 PFAM: cell cycle protein; KEGG: ere:EUBREC_1739 cell-division protein RodA and FtsW-like protein YP_003822241.1 KEGG: eel:EUBELI_01002 cell division topological specificity factor; TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE YP_003822242.1 TIGRFAM: septum site-determining protein MinD; KEGG: ere:EUBREC_0094 septum site-determining protein MinD YP_003822243.1 PFAM: Septum formation inhibitor MinC; KEGG: cpy:Cphy_2371 septum site-determining protein MinC YP_003822244.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: ere:EUBREC_1742 peptidoglycan glycosyltransferase YP_003822245.1 TIGRFAM: rod shape-determining protein MreD; KEGG: ere:EUBREC_1743 hypothetical protein YP_003822246.1 KEGG: cpy:Cphy_2374 rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC YP_003822247.1 KEGG: cpy:Cphy_2376 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC YP_003822249.1 KEGG: eel:EUBELI_00994 hypothetical protein YP_003822250.1 PFAM: Aluminium resistance family protein; KEGG: cpy:Cphy_2378 aluminium resistance family protein YP_003822251.1 TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: cpy:Cphy_2379 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_003822252.1 KEGG: ere:EUBREC_1749 DNA mismatch repair enzyme ( ATPase); TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein YP_003822253.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: MutS III domain protein; DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; KEGG: eel:EUBELI_00990 DNA mismatch repair protein MutS; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein YP_003822254.1 TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004 ; deoxyribonuclease/rho motif-related TRAM; KEGG: cpy:Cphy_2599 tRNA-i(6)A37 thiotransferase enzyme MiaB; SMART: Elongator protein 3/MiaB/NifB YP_003822255.1 PFAM: protein of unknown function DUF1189; KEGG: lsg:lse_1359 hypothetical protein YP_003822256.1 KEGG: ssl:SS1G_06849 hypothetical protein YP_003822257.1 PFAM: glycoside hydrolase family 1; KEGG: str:Sterm_3467 glycoside hydrolase family 1 YP_003822258.1 TIGRFAM: PTS system, beta-glucoside-specific IIABC subunit; PTS system, glucose subfamily, IIA subunit; KEGG: str:Sterm_3468 PTS system, beta-glucoside-specific IIABC subunit; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003822259.1 PFAM: CAT RNA-binding domain protein; PRD domain protein; KEGG: str:Sterm_3469 transcriptional antiterminator, BglG YP_003822260.1 KEGG: pjd:Pjdr2_2956 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822261.1 KEGG: cpy:Cphy_2600 gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase YP_003822262.1 KEGG: cno:NT01CX_1657 5-formyltetrahydrofolate cyclo-ligase family protein; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_003822263.1 PFAM: protein of unknown function DUF896; KEGG: cpy:Cphy_2602 hypothetical protein YP_003822264.1 KEGG: cpy:Cphy_2603 glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003822265.1 PFAM: FAD dependent oxidoreductase; KEGG: cpy:Cphy_2604 oxidoreductase, FAD-binding YP_003822266.1 PFAM: HI0933 family protein; KEGG: cpy:Cphy_2605 hypothetical protein YP_003822267.1 KEGG: cpy:Cphy_2606 hypothetical protein YP_003822268.1 PFAM: virulence factor MVIN family protein; KEGG: ere:EUBREC_1754 stage V sporulation protein B YP_003822269.1 KEGG: cpy:Cphy_2608 hypothetical protein YP_003822270.1 PFAM: protein of unknown function UPF0054; KEGG: cpy:Cphy_2609 hypothetical protein YP_003822271.1 PFAM: PhoH family protein; KEGG: cpy:Cphy_2611 PhoH family protein YP_003822272.1 KEGG: cpy:Cphy_2612 stage IV sporulation YqfD; TIGRFAM: sporulation protein YqfD; PFAM: stage IV sporulation YqfD YP_003822273.1 KEGG: cpy:Cphy_2613 hypothetical protein YP_003822274.1 KEGG: eel:EUBELI_00967 hypothetical protein; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21 YP_003822275.1 KEGG: cpy:Cphy_2617 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1 YP_003822277.1 KEGG: cbt:CLH_2497 lipoprotein YP_003822278.1 KEGG: cpy:Cphy_2382 ribonuclease H; PFAM: ribonuclease H YP_003822279.1 PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: eel:EUBELI_01413 metallo-beta-lactamase family protein YP_003822280.1 KEGG: cpy:Cphy_2385 stage IV sporulation protein A; TIGRFAM: stage IV sporulation protein A; PFAM: Sporulation stage IV protein A YP_003822281.1 PFAM: Carbohydrate kinase, FGGY-like; KEGG: cpy:Cphy_1145 carbohydrate kinase FGGY YP_003822282.1 PFAM: Carbohydrate kinase, FGGY-like; KEGG: kpe:KPK_4467 carbohydrate kinase, FGGY family YP_003822283.1 KEGG: cbt:CLH_3014 L-xylulose 5-phosphate 3-epimerase; PFAM: Xylose isomerase domain protein TIM barrel YP_003822284.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: cce:Ccel_3224 alcohol dehydrogenase GroES domain protein YP_003822285.1 KEGG: tna:CTN_1296 sugar ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_003822286.1 KEGG: smr:Smar_1146 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822287.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hor:Hore_03310 binding-protein-dependent transport systems inner membrane component YP_003822288.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hor:Hore_03300 binding-protein-dependent transport systems inner membrane component YP_003822289.1 PFAM: extracellular solute-binding protein family 1; KEGG: ttr:Tter_2488 extracellular solute-binding protein family 1 YP_003822290.1 KEGG: pjd:Pjdr2_2065 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003822291.1 KEGG: bha:BH3447 two-component sensor histidine kinase; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein YP_003822292.1 KEGG: cpy:Cphy_3532 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822293.1 KEGG: cpy:Cphy_3533 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822294.1 PFAM: inner-membrane translocator; KEGG: dhd:Dhaf_4924 inner-membrane translocator YP_003822295.1 PFAM: inner-membrane translocator; KEGG: dhd:Dhaf_4925 inner-membrane translocator YP_003822296.1 PFAM: Extracellular ligand-binding receptor; KEGG: dhd:Dhaf_4926 extracellular ligand-binding receptor YP_003822297.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: ere:EUBREC_2285 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) YP_003822298.1 PFAM: protein of unknown function DUF205; KEGG: ere:EUBREC_2286 hypothetical protein YP_003822299.1 TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: cpy:Cphy_2390 small GTP-binding protein; SMART: AAA ATPase YP_003822300.1 PFAM: protein of unknown function DUF512; KEGG: cpy:Cphy_2391 hypothetical protein YP_003822301.1 TIGRFAM: ribose-phosphate pyrophosphokinase; KEGG: cpy:Cphy_0104 phosphoribosylpyrophosphate synthetase; PFAM: phosphoribosyltransferase YP_003822302.1 KEGG: ere:EUBREC_2291 hypothetical protein; manually curated; PFAM: protein of unknown function DUF152 YP_003822303.1 PFAM: protein of unknown function UPF0102; KEGG: cpy:Cphy_2398 hypothetical protein YP_003822304.1 KEGG: eel:EUBELI_01046 ribonuclease HII; PFAM: ribonuclease HII/HIII YP_003822305.1 KEGG: ere:EUBREC_1512 ribosomal biogenesis GTPase; TIGRFAM: ribosome biogenesis GTP-binding protein YlqF; PFAM: GTP-binding protein HSR1-related YP_003822306.1 KEGG: cpy:Cphy_2402 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region YP_003822307.1 KEGG: ere:EUBREC_1510 LSU ribosomal protein L19P; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19 YP_003822308.1 TIGRFAM: tRNA (guanine-N1)-methyltransferase; KEGG: cpy:Cphy_2405 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_003822309.1 KEGG: cpy:Cphy_2406 16S rRNA processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein YP_003822310.1 KEGG: ere:EUBREC_1507 hypothetical protein YP_003822311.1 KEGG: ckr:CKR_1298 hypothetical protein; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16 YP_003822312.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; KEGG: eel:EUBELI_01053 signal recognition particle, subunit SRP54; SMART: AAA ATPase YP_003822313.1 PFAM: helix-turn-helix protein YlxM/p13 family protein; KEGG: eel:EUBELI_01054 hypothetical protein YP_003822314.1 PFAM: alpha/beta hydrolase fold; KEGG: lrh:LGG_02815 alpha/beta superfamily hydrolase YP_003822315.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fnu:FN0356 lactoylglutathione lyase YP_003822316.1 TIGRFAM: seryl-tRNA synthetase; KEGG: cbi:CLJ_B0587 seryl-tRNA synthetase; PFAM: Seryl-tRNA synthetase, class IIa-like; tRNA synthetase class II (G H P and S) YP_003822317.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: eel:EUBELI_01355 pyridoxine kinase YP_003822318.1 KEGG: ere:EUBREC_0262 hypothetical protein YP_003822319.1 KEGG: cpy:Cphy_2483 thiamine pyrophosphokinase; TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region YP_003822320.1 TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: cpy:Cphy_2484 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase YP_003822321.1 KEGG: ere:EUBREC_2338 GTPase; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC YP_003822322.1 KEGG: ere:EUBREC_2340 protein kinase; PFAM: Serine/threonine-protein kinase-like domain; PASTA domain containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; PASTA domain containing protein YP_003822323.1 KEGG: cpy:Cphy_2487 protein serine/threonine phosphatase; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein YP_003822324.1 KEGG: ere:EUBREC_2342 radical SAM enzyme, Cfr family; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein YP_003822325.1 KEGG: ere:EUBREC_2343 sun protein; TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44 YP_003822326.1 PFAM: peptidase membrane zinc metallopeptidase KEGG: cpy:Cphy_2490 peptidase membrane zinc metallopeptidase YP_003822327.1 TIGRFAM: methionyl-tRNA formyltransferase; KEGG: ere:EUBREC_2345 methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein YP_003822328.1 KEGG: cpy:Cphy_2492 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_003822329.1 TIGRFAM: primosomal protein N'; PFAM: type III restriction protein res subunit; helicase domain protein; KEGG: cpy:Cphy_2493 primosomal protein N'; SMART: DEAD-like helicase ; helicase domain protein YP_003822330.1 manually curated; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; KEGG: dsy:DSY3693 hypothetical protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_003822331.1 KEGG: eel:EUBELI_00713 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_003822332.1 KEGG: ere:EUBREC_1958 formate--tetrahydrofolate ligase; PFAM: formate-tetrahydrofolate ligase FTHFS YP_003822333.1 KEGG: cpy:Cphy_2757 cell divisionFtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase YP_003822334.1 PFAM: peptidase S14 ClpP; KEGG: cpy:Cphy_2759 peptidase S14 ClpP YP_003822335.1 PFAM: Citrate synthase; KEGG: cno:NT01CX_0234 citrate synthase YP_003822336.1 PFAM: aconitate hydratase domain protein; KEGG: afn:Acfer_1973 aconitate hydratase domain protein YP_003822337.1 PFAM: periplasmic binding protein; KEGG: dsy:DSY3095 hypothetical protein YP_003822338.1 KEGG: swo:Swol_1665 hypothetical protein YP_003822339.1 KEGG: dhd:Dhaf_4264 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822340.1 PFAM: transport system permease protein; KEGG: swo:Swol_1695 transport system permease protein YP_003822341.1 KEGG: tgu:100190207 chromosome 1 open reading frame 57 YP_003822342.1 PFAM: protein of unknown function DUF182; KEGG: efa:EF2571 hypothetical protein YP_003822343.1 KEGG: ere:EUBREC_1937 N-acetylmuramoyl-L-alanine amidase, C-terminus; PFAM: NLP/P60 protein; SH3 type 3 domain protein; SMART: SH3 domain protein YP_003822344.1 KEGG: ere:EUBREC_0186 ABC-type uncharacterized transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822345.1 PFAM: inner-membrane translocator; KEGG: bhy:BHWA1_00397 hypothetical protein YP_003822346.1 PFAM: protein of unknown function DUF534; KEGG: bhy:BHWA1_00886 ABC transporter substrate binding protein YP_003822347.1 PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: cpy:Cphy_1070 hypothetical protein YP_003822348.1 TIGRFAM: galactose-1-phosphate uridylyltransferase; KEGG: ere:EUBREC_1388 galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein YP_003822349.1 PFAM: Heptaprenyl diphosphate synthase component I; KEGG: ere:EUBREC_1654 heptaprenyl diphosphate synthase component I YP_003822350.1 KEGG: cpy:Cphy_1558 DegV family protein; TIGRFAM: degV family protein; PFAM: DegV family protein YP_003822351.1 KEGG: cpy:Cphy_2829 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003822352.1 KEGG: cth:Cthe_1600 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003822353.1 KEGG: amt:Amet_1225 Na/Pi-cotransporter II-related protein; TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein YP_003822354.1 KEGG: ctc:CTC00571 membrane dipeptidase; PFAM: peptidase M19 renal dipeptidase YP_003822355.1 PFAM: protein of unknown function DUF214; KEGG: tpd:Teth39_2013 hypothetical protein YP_003822356.1 KEGG: lsg:lse_0171 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822357.1 PFAM: secretion protein HlyD family protein; KEGG: tit:Thit_0217 efflux transporter, RND family, MFP subunit YP_003822358.1 PFAM: S-layer domain protein; KEGG: ate:Athe_2295 S-layer domain protein YP_003822359.1 KEGG: ele:Elen_0373 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003822360.1 KEGG: shi:Shel_13150 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003822361.1 PFAM: RelA/SpoT domain protein; KEGG: cac:CAC3340 hypothetical protein YP_003822362.1 PFAM: ATPase-like, ParA/MinD; KEGG: dsy:DSY3438 hypothetical protein YP_003822363.1 KEGG: pdi:BDI_1769 hypothetical protein; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_003822364.1 KEGG: ere:EUBREC_0096 hypothetical protein YP_003822365.1 KEGG: ere:EUBREC_1572 hypothetical protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related YP_003822366.1 PFAM: LrgA family protein; KEGG: ere:EUBREC_2893 effector of murein hydrolase LrgA YP_003822367.1 PFAM: LrgB family protein; KEGG: cpy:Cphy_0707 LrgB family protein YP_003822368.1 KEGG: cbe:Cbei_2712 FliB family protein YP_003822369.1 KEGG: cpy:Cphy_2396 hypothetical protein YP_003822371.1 KEGG: cbe:Cbei_4532 PTS system, N-acetylglucosamine-specific IIBC subunit; TIGRFAM: PTS system, N-acetylglucosamine-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003822372.1 KEGG: mpu:MYPU_6030 phosphocarrier protein HPr (histidine-containing protein); TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr YP_003822373.1 KEGG: bcl:ABC3790 PTS system, glucose-specific enzyme II, A component; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain YP_003822374.1 PFAM: CAT RNA-binding domain protein; PRD domain protein; KEGG: gyc:GYMC61_3480 transcriptional antiterminator, BglG YP_003822375.1 PFAM: Resolvase domain; Recombinase; KEGG: drm:Dred_0913 resolvase domain-containing protein YP_003822376.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: cce:Ccel_1071 nickel-dependent hydrogenase large subunit YP_003822377.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; manually curated; KEGG: cce:Ccel_1070 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA YP_003822378.1 PFAM: cytochrome b5; KEGG: cac:CA_P0144 steroid-binding protein YP_003822379.1 KEGG: cbb:CLD_2803 hypothetical protein YP_003822380.1 KEGG: cbe:Cbei_3011 hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein YP_003822381.1 PFAM: AICARFT/IMPCHase bienzyme formylation region; KEGG: eel:EUBELI_20422 phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme formylation region YP_003822382.1 PFAM: Inosine monophosphate cyclohydrolase-like; KEGG: ere:EUBREC_1566 hypothetical protein YP_003822383.1 PFAM: protein of unknown function DUF214; KEGG: amt:Amet_0368 hypothetical protein YP_003822384.1 KEGG: swo:Swol_0942 S-layer-like domain-containing protein YP_003822385.1 KEGG: amt:Amet_0366 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822386.1 KEGG: ere:EUBREC_2349 aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region YP_003822387.1 PFAM: Aspartate carbamoyltransferase regulatory subunit-like; KEGG: eel:EUBELI_01333 aspartate carbamoyltransferase YP_003822388.1 SMART: AAA ATPase; KEGG: cpy:Cphy_3519 phosphoribulokinase/uridine kinase YP_003822389.1 PFAM: protein of unknown function DUF34; KEGG: fnu:FN1316 NGG1-interacting factor 3 YP_003822390.1 PFAM: protein of unknown function DUF633; KEGG: eel:EUBELI_00678 hypothetical protein YP_003822391.1 KEGG: eel:EUBELI_00677 RNA polymerase primary sigma factor; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein YP_003822392.1 SMART: zinc finger CHC2-family protein; Toprim sub domain protein; manually curated; TIGRFAM: DNA primase; KEGG: ere:EUBREC_2359 DNA primase; PFAM: zinc finger CHC2-family protein; DNA primase catalytic core domain; TOPRIM domain protein YP_003822393.1 TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: eel:EUBELI_00675 dGTPase; SMART: metal-dependent phosphohydrolase HD region YP_003822394.1 KEGG: cbe:Cbei_3047 xylan 1,4-beta-xylosidase; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003822395.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpy:Cphy_0532 peptidase S8/S53 subtilisin kexin sedolisin YP_003822396.1 KEGG: cpy:Cphy_3479 SpoIID/LytB domain-containing protein; TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein YP_003822397.1 PFAM: protein of unknown function UPF0118; KEGG: ere:EUBREC_0025 hypothetical protein YP_003822398.1 KEGG: csc:Csac_1846 hypothetical protein YP_003822399.1 KEGG: cpy:Cphy_3263 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003822400.1 KEGG: cpy:Cphy_3853 phosphoenolpyruvate carboxykinase (ATP) YP_003822401.1 PFAM: conserved hypothetical protein; KEGG: cac:CAC0836 beta-D-galactosidase YP_003822402.1 PFAM: cell wall hydrolase SleB; KEGG: cpy:Cphy_3512 cell wall hydrolase SleB YP_003822403.1 KEGG: ccu:Ccur_09630 YbaK/EbsC protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region YP_003822404.1 KEGG: ere:EUBREC_1995 LeuD; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein YP_003822405.1 KEGG: ere:EUBREC_1996 3-isopropylmalate dehydratase, large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; 3-isopropylmalate dehydratase; homoaconitate hydratase family protein; PFAM: aconitate hydratase domain protein YP_003822406.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ere:EUBREC_1997 carbonate dehydratase YP_003822407.1 TIGRFAM: ketol-acid reductoisomerase; KEGG: cpy:Cphy_3020 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain protein; acetohydroxy acid isomeroreductase YP_003822408.1 KEGG: ere:EUBREC_2001 acetolactate synthase 3 regulatory subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein YP_003822409.1 KEGG: cdl:CDR20291_3473 hypothetical protein; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_003822410.1 PFAM: metallophosphoesterase; KEGG: ere:EUBREC_1454 hypothetical protein YP_003822411.1 PFAM: basic membrane lipoprotein; KEGG: ere:EUBREC_1453 simple sugar transport system substrate-binding protein YP_003822412.1 KEGG: ere:EUBREC_1539 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein YP_003822413.1 TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; KEGG: cpy:Cphy_2866 ribonuclease R; SMART: Cold shock protein YP_003822414.1 KEGG: ere:EUBREC_1537 hypothetical protein; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit YP_003822415.1 KEGG: adg:Adeg_1614 enolase; PFAM: Enolase-like YP_003822416.1 KEGG: cpy:Cphy_3476 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit YP_003822417.1 KEGG: cpy:Cphy_3477 phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein YP_003822418.1 KEGG: lhe:lhv_1482 hypothetical protein YP_003822419.1 KEGG: pfa:PF13_0003 erythrocyte membrane protein 1 (PfEMP1) YP_003822422.1 KEGG: ere:EUBREC_2325 ABC transporter, ATP-binding/permease protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003822423.1 KEGG: ere:EUBREC_2326 ABC transporter, ATP-binding / permease protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003822424.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cbe:Cbei_2143 LysR family transcriptional regulator YP_003822425.1 PFAM: Radical SAM domain protein; KEGG: dsy:DSY1007 hypothetical protein YP_003822426.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: cbi:CLJ_B3155 xanthine/uracil permease family protein YP_003822427.1 KEGG: eel:EUBELI_01167 hypothetical protein; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN YP_003822428.1 KEGG: cce:Ccel_3186 cysteine synthase A; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003822429.1 KEGG: cpy:Cphy_0759 carboxypeptidase Taq; PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase YP_003822430.1 KEGG: cpy:Cphy_2803 DNA polymerase I; PFAM: 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2 YP_003822431.1 KEGG: xop:PXO_03095 outer membrane protein YP_003822432.1 PFAM: CheW domain protein; KEGG: ttu:TERTU_3489 hypothetical protein YP_003822433.1 PFAM: NUDIX hydrolase; KEGG: cpy:Cphy_1338 NUDIX hydrolase YP_003822434.1 KEGG: cpy:Cphy_1337 penicillin-binding protein transpeptidase; PFAM: penicillin-binding protein transpeptidase YP_003822435.1 PFAM: cell cycle protein; KEGG: ere:EUBREC_1660 cell cycle protein YP_003822436.1 PFAM: peptidase U32; KEGG: ere:EUBREC_1659 peptidase, U32 family YP_003822437.1 KEGG: eel:EUBELI_00944 hypothetical protein YP_003822438.1 TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: ATPase AAA; Holliday junction DNA helicase RuvB domain; KEGG: eel:EUBELI_00943 Holliday junction DNA helicase RuvB; SMART: AAA ATPase YP_003822439.1 KEGG: cpy:Cphy_1333 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA domain protein; DNA recombination protein RuvA domain I YP_003822440.1 PFAM: DNA polymerase B exonuclease; KEGG: eel:EUBELI_00933 hypothetical protein YP_003822441.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cbh:CLC_2221 short chain dehydrogenase/reductase family oxidoreductase YP_003822442.1 KEGG: cbe:Cbei_2682 hypothetical protein YP_003822443.1 KEGG: eel:EUBELI_00506 cold shock protein (beta-ribbon, CspA family); PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein YP_003822444.1 PFAM: Hsp33 protein; KEGG: cpy:Cphy_3417 HSP33 protein YP_003822445.1 PFAM: Methyltransferase type 11; KEGG: cpy:Cphy_3418 methyltransferase type 12 YP_003822446.1 PFAM: SEC-C motif domain protein; KEGG: eel:EUBELI_00499 preprotein translocase SecA subunit YP_003822447.1 KEGG: cpy:Cphy_2186 transglutaminase domain-containing protein; PFAM: transglutaminase domain protein; Potassium channel, voltage dependent, Kv, tetramerisation; SMART: transglutaminase domain protein YP_003822448.1 KEGG: cac:CAC0113 sugar metabolism transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_003822449.1 PFAM: CutC family protein; KEGG: cpy:Cphy_2183 CutC family protein YP_003822450.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: cno:NT01CX_1744 oligopeptide ABC transporter ATPase component; SMART: AAA ATPase YP_003822451.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: bpu:BPUM_1073 oligopeptide ABC transporter ATP-binding protein; SMART: AAA ATPase YP_003822452.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gwc:GWCH70_0758 binding-protein-dependent transport systems inner membrane component YP_003822453.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: afl:Aflv_2132 ABC-type oligopeptide transport system, permease component YP_003822454.1 PFAM: extracellular solute-binding protein family 5; KEGG: afl:Aflv_2133 ABC-type oligopeptide transport system, periplasmic component YP_003822455.1 KEGG: tvo:TVN1166 secreted endonuclease distantly related to Holliday junction resolvase YP_003822456.1 KEGG: tet:TTHERM_00107020 hypothetical protein YP_003822457.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpy:Cphy_2817 peptidase S8/S53 subtilisin kexin sedolisin YP_003822458.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpy:Cphy_2817 peptidase S8/S53 subtilisin kexin sedolisin YP_003822459.1 KEGG: eel:EUBELI_01285 large conductance mechanosensitive channel, MscL family; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel YP_003822460.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: ctc:CTC02474 carbon monoxide dehydrogenase, small subunit YP_003822461.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: aoe:Clos_0263 molybdopterin dehydrogenase FAD-binding YP_003822462.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: ctc:CTC02477 carbon-monoxide dehydrogenase, large subunit YP_003822463.1 KEGG: cbe:Cbei_3113 hypothetical protein YP_003822464.1 KEGG: cbe:Cbei_3112 hypothetical protein YP_003822466.1 KEGG: bfo:BRAFLDRAFT_96185 hypothetical protein YP_003822467.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; KEGG: cdl:CDR20291_2152 L-lysine 2,3-aminomutase; PFAM: Radical SAM domain protein YP_003822468.1 KEGG: cbe:Cbei_2335 heavy metal transport/detoxification protein YP_003822469.1 KEGG: cbf:CLI_1767 cold shock protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein YP_003822470.1 KEGG: ckl:CKL_2423 hypothetical protein YP_003822471.1 PFAM: thymidine kinase; KEGG: cpy:Cphy_2858 thymidine kinase YP_003822472.1 PFAM: nitroreductase; KEGG: dma:DMR_24320 nitroreductase family protein YP_003822473.1 KEGG: tet:TTHERM_00538530 hypothetical protein YP_003822474.1 PFAM: phosphofructokinase; KEGG: eel:EUBELI_00060 6-phosphofructokinase YP_003822475.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cdl:CDR20291_1736 signaling protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein YP_003822476.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bpy:Bphyt_4808 periplasmic binding protein/LacI transcriptional regulator YP_003822477.1 KEGG: cbe:Cbei_4458 histidine kinase internal region; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; Cache domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein YP_003822478.1 PFAM: inner-membrane translocator; KEGG: inner-membrane translocator YP_003822479.1 PFAM: inner-membrane translocator; KEGG: scb:SCAB_63981 transporter transmembrane subunit YP_003822480.1 KEGG: cbe:Cbei_4461 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822481.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: hau:Haur_4154 periplasmic binding protein/LacI transcriptional regulator YP_003822482.1 KEGG: cbe:Cbei_4464 response regulator receiver protein; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003822483.1 KEGG: cce:Ccel_2638 transcriptional regulator, MerR family; PFAM: transcription activator effector binding; regulatory protein MerR; SMART: regulatory protein MerR YP_003822484.1 KEGG: sga:GALLO_0111 HAD-superfamily hydrolase / phosphatase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_003822485.1 KEGG: apr:Apre_1425 xanthine permease; TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease YP_003822486.1 KEGG: cbt:CLH_2614 hypothetical protein YP_003822487.1 KEGG: cpy:Cphy_3921 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein YP_003822488.1 KEGG: dhd:Dhaf_1153 hypothetical protein YP_003822489.1 PFAM: conserved hypothetical protein; KEGG: cpy:Cphy_1097 hypothetical protein YP_003822490.1 KEGG: cpy:Cphy_1096 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822491.1 PFAM: transcriptional regulator PadR family protein; KEGG: bld:BLi04098 hypothetical protein YP_003822492.1 KEGG: eel:EUBELI_20496 large subunit ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20 YP_003822493.1 KEGG: eel:EUBELI_20497 hypothetical protein; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35 YP_003822494.1 KEGG: cpy:Cphy_0447 translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; PFAM: Translation initiation factor 3-like YP_003822495.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cce:Ccel_0514 protein of unknown function DUF6 transmembrane YP_003822496.1 PFAM: protein of unknown function DUF1540; KEGG: eel:EUBELI_01323 hypothetical protein YP_003822497.1 KEGG: cpy:Cphy_0748 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; TGS domain protein; Anticodon-binding domain protein YP_003822498.1 PFAM: Auxin Efflux Carrier; KEGG: cbe:Cbei_2354 auxin efflux carrier YP_003822499.1 KEGG: cpy:Cphy_0537 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV YP_003822500.1 PFAM: Acetamidase/Formamidase; KEGG: amt:Amet_2922 acetamidase/formamidase YP_003822501.1 KEGG: eel:EUBELI_20099 phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003822503.1 KEGG: cpy:Cphy_2869 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003822504.1 PFAM: regulatory protein LysR; KEGG: cbe:Cbei_1987 regulatory protein, LysR YP_003822505.1 KEGG: cbe:Cbei_1983 hypothetical protein YP_003822506.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: cbt:CLH_3082 xanthine dehydrogenase, molybdenum-binding subunit YP_003822507.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: cbt:CLH_3081 xanthine dehydrogenase, iron-sulfur binding subunit YP_003822508.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: cbk:CLL_A3326 medium FAD-binding subunit of molybdenum enzyme YP_003822509.1 KEGG: cbe:Cbei_1982 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; TIGRFAM: selenium-dependent molybdenum hydroxylase 1; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; [2Fe-2S]-binding domain protein; ferredoxin; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead YP_003822510.1 KEGG: lsl:LSL_1592 hypothetical protein YP_003822511.1 PFAM: LytTr DNA-binding region; KEGG: cbe:Cbei_3504 response regulator receiver protein YP_003822512.1 KEGG: cpy:Cphy_3048 anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein YP_003822513.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; KEGG: cpy:Cphy_3050 anaerobic ribonucleoside triphosphate reductase; PFAM: formate C-acetyltransferase glycine radical; ATP-cone domain protein YP_003822514.1 PFAM: NADPH-dependent FMN reductase; KEGG: cac:CAC3341 multimeric flavodoxin WrbA family protein YP_003822515.1 KEGG: aoe:Clos_1039 non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; SNF2 helicase associated domain protein ; zinc finger SWIM domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003822516.1 TIGRFAM: arginyl-tRNA synthetase; KEGG: eel:EUBELI_00526 arginyl-tRNA synthetase YP_003822517.1 PFAM: MgtC/SapB transporter; KEGG: cpy:Cphy_0202 MgtC/SapB transporter YP_003822518.1 KEGG: efa:EF1816 hypothetical protein YP_003822519.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: ckr:CKR_2131 hypothetical protein YP_003822520.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: apr:Apre_0240 binding-protein-dependent transport systems inner membrane component YP_003822521.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llk:LLKF_2261 sugar ABC transporter, permease protein YP_003822522.1 PFAM: extracellular solute-binding protein family 1; KEGG: apr:Apre_0238 extracellular solute-binding protein family 1 YP_003822523.1 PFAM: sulfatase; KEGG: cpe:CPE0231 arylsulfatase YP_003822524.1 PFAM: ROK family protein; KEGG: dtu:Dtur_0688 ROK family protein YP_003822525.1 PFAM: major facilitator superfamily MFS_1; KEGG: cpy:Cphy_3025 major facilitator transporter YP_003822526.1 KEGG: cpy:Cphy_3025 major facilitator transporter YP_003822527.1 KEGG: ere:EUBREC_1433 translation elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor KOW domain protein; Elongation factor P/YeiP protein YP_003822528.1 TIGRFAM: 3-dehydroquinate dehydratase, type II; KEGG: eel:EUBELI_01325 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II YP_003822529.1 KEGG: eel:EUBELI_01328 hypothetical protein; TIGRFAM: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003822530.1 PFAM: ATP-cone domain protein; KEGG: eel:EUBELI_01329 ATP-cone domain protein YP_003822531.1 KEGG: cpy:Cphy_2726 YlmC/YmxH family sporulation protein; TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain protein YP_003822532.1 PFAM: protein of unknown function DUF975; KEGG: cbi:CLJ_B1857 hypothetical protein YP_003822533.1 KEGG: sna:Snas_2969 hypothetical protein YP_003822534.1 PFAM: NLPA lipoprotein; KEGG: ele:Elen_2017 NlpA lipoprotein YP_003822535.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dap:Dacet_2080 binding-protein-dependent transport systems inner membrane component YP_003822536.1 KEGG: sga:GALLO_2132 ABC-type metal ion transport system, ATP-binding component; PFAM: ABC transporter related; NIL domain; SMART: AAA ATPase YP_003822537.1 KEGG: cby:CLM_3788 dipeptidase; TIGRFAM: dipeptidase; PFAM: peptidase M20 YP_003822538.1 PFAM: Protein of unknown function; KEGG: cpy:Cphy_2333 GatB/YqeY domain-containing protein YP_003822539.1 KEGG: eel:EUBELI_00557 peptide chain release factor RF-3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein YP_003822540.1 KEGG: cpy:Cphy_3014 acetyl esterase YP_003822541.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; KEGG: eel:EUBELI_01156 phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein YP_003822542.1 KEGG: eel:EUBELI_01157 type III pantothenate kinase; TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor YP_003822543.1 KEGG: cpy:Cphy_2468 sporulation sigma factor SigG; TIGRFAM: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein YP_003822544.1 KEGG: cdf:CD1559 hypothetical protein YP_003822545.1 KEGG: cpy:Cphy_1579 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein YP_003822546.1 KEGG: cpy:Cphy_2469 sporulation sigma factor SigE; TIGRFAM: RNA polymerase sigma-E factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein YP_003822547.1 PFAM: peptidase U4 sporulation factor SpoIIGA; KEGG: cpy:Cphy_2470 peptidase U4 sporulation factor SpoIIGA YP_003822548.1 KEGG: ere:EUBREC_2580 valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase YP_003822549.1 KEGG: eel:EUBELI_01345 hypothetical protein YP_003822550.1 KEGG: cpy:Cphy_0458 hypothetical protein YP_003822551.1 KEGG: ere:EUBREC_1826 hypothetical protein YP_003822552.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: eel:EUBELI_01448 malate dehydrogenase (oxaloacetate-decarboxylating) YP_003822553.1 KEGG: eel:EUBELI_01450 hypothetical protein YP_003822554.1 KEGG: tet:TTHERM_00609450 hypothetical protein YP_003822555.1 KEGG: drm:Dred_2233 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822556.1 KEGG: clo:HMPREF0868_1418 ABC transporter, ATP-binding protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003822557.1 KEGG: drm:Dred_2235 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_003822558.1 KEGG: cpy:Cphy_0380 GTP-binding protein HSR1-related; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related YP_003822559.1 SMART: peptidase S16 lon domain protein; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: ere:EUBREC_0991 ATP-dependent protease La; PFAM: ATPase AAA; peptidase S16 lon domain protein YP_003822560.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; Clp ATPase-like; KEGG: eel:EUBELI_01453 ATP-dependent Clp protease ATP-binding subunit ClpX; SMART: AAA ATPase YP_003822561.1 TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; KEGG: cpy:Cphy_0377 ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP YP_003822562.1 KEGG: cpy:Cphy_0376 trigger factor; TIGRFAM: trigger factor; PFAM: trigger factor domain; peptidylprolyl isomerase FKBP-type; trigger factor domain protein YP_003822563.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: cdf:CD0748 signaling protein; SMART: GGDEF domain containing protein; EAL domain protein YP_003822564.1 KEGG: cdl:CDR20291_0675 lipoprotein YP_003822565.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cpe:CPE1341 galactoside ABC transporter YP_003822566.1 PFAM: adenylate cyclase; KEGG: eel:EUBELI_01387 adenylate cyclase YP_003822567.1 PFAM: inner-membrane translocator; KEGG: str:Sterm_1704 inner-membrane translocator YP_003822568.1 KEGG: ctc:CTC00861 galactoside transport ATP-binding protein MglA; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822569.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: gym:GYMC10_3701 periplasmic binding protein/LacI transcriptional regulator YP_003822570.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cbe:Cbei_4428 D-galactose-binding periplasmic protein precursor YP_003822571.1 KEGG: cbe:Cbei_4429 periplasmic binding protein/LacI transcriptional regulator YP_003822572.1 KEGG: cbe:Cbei_4430 multi-sensor signal transduction histidine kinase; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; Cache domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein YP_003822573.1 KEGG: cbe:Cbei_4431 response regulator receiver protein; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003822574.1 PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: cpy:Cphy_1382 precorrin-8X methylmutase CbiC/CobH YP_003822575.1 KEGG: cpy:Cphy_1112 cobyric acid synthase; TIGRFAM: cobyric acid synthase CobQ; PFAM: CobB/CobQ domain protein glutamine amidotransferase YP_003822576.1 PFAM: aminotransferase class I and II; KEGG: cce:Ccel_1287 aminotransferase class I and II YP_003822577.1 KEGG: cpy:Cphy_1110 cobalamin biosynthesis protein CobD; TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB YP_003822578.1 KEGG: eel:EUBELI_20177 hypothetical protein YP_003822579.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cpy:Cphy_1107 cobalamin-5-phosphate synthase CobS YP_003822580.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rhi:NGR_a03690 hypothetical 35.5 kDa protein YP_003822581.1 PFAM: major facilitator superfamily MFS_1; KEGG: cpy:Cphy_3025 major facilitator transporter YP_003822582.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbt:CLH_0121 sugar ABC transporter permease YP_003822583.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llk:LLKF_2261 sugar ABC transporter, permease protein YP_003822584.1 PFAM: extracellular solute-binding protein family 1; KEGG: ssa:SSA_1003 ABC transporter substrate-binding protein-multiple sugars YP_003822585.1 KEGG: tit:Thit_0427 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; SMART: ATP-binding region ATPase domain protein YP_003822586.1 KEGG: gym:GYMC10_2584 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003822587.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbk:CLL_A1516 mate efflux family protein YP_003822588.1 KEGG: nth:Nther_1810 sporulation protein YunB YP_003822589.1 TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; KEGG: cpy:Cphy_1925 sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit YP_003822590.1 KEGG: cth:Cthe_0042 small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related YP_003822591.1 PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; KEGG: ere:EUBREC_0235 thiamine biosynthesis protein ThiH YP_003822592.1 KEGG: ere:EUBREC_0233 hypothetical protein YP_003822593.1 KEGG: cpy:Cphy_3024 phosphotransferase domain-containing protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein YP_003822594.1 PFAM: major facilitator superfamily MFS_1; KEGG: cpy:Cphy_3025 major facilitator transporter YP_003822595.1 PFAM: PHP domain protein; KEGG: cpy:Cphy_3026 phosphotransferase domain-containing protein YP_003822596.1 PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_3027 extracellular solute-binding protein YP_003822597.1 PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: cpy:Cphy_3028 alpha-L-fucosidase; SMART: glycoside hydrolase family 29 (alpha-L-fucosidase) YP_003822598.1 PFAM: glycosyl hydrolase family 88; KEGG: cpy:Cphy_3029 glycosy hydrolase family protein YP_003822599.1 PFAM: conserved hypothetical protein; KEGG: cpy:Cphy_3030 hypothetical protein YP_003822600.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_3031 binding-protein-dependent transport systems inner membrane component YP_003822601.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_3032 binding-protein-dependent transport systems inner membrane component YP_003822602.1 KEGG: cpy:Cphy_3033 histidine kinase internal region; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein YP_003822603.1 KEGG: cpy:Cphy_3034 two component AraC family transcriptional regulator; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn-helix, AraC domain YP_003822604.1 PFAM: cobalbumin biosynthesis protein; KEGG: eel:EUBELI_20179 adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase YP_003822605.1 TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; KEGG: eel:EUBELI_20180 hydrogenobyrinic acid a,c-diamide synthase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_003822606.1 KEGG: cpy:Cphy_1380 cobyrinic acid a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase YP_003822607.1 KEGG: cpy:Cphy_1378 precorrin-3B C17-methyltransferase; TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003822608.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: cce:Ccel_1273 cobalamin (vitamin B12) biosynthesis CbiG protein YP_003822609.1 TIGRFAM: precorrin-4 C11-methyltransferase; KEGG: cpy:Cphy_1376 precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003822610.1 KEGG: cpy:Cphy_1375 precorrin-2 C20-methyltransferase; TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003822611.1 KEGG: eel:EUBELI_20186 cobalamin biosynthesis protein CbiD; TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein YP_003822612.1 KEGG: cpy:Cphy_3422 hypothetical protein YP_003822613.1 KEGG: btk:BT9727_4239 stress-responsive transcriptional regulator PspC; manually curated; PFAM: PspC domain protein YP_003822614.1 KEGG: cpy:Cphy_1272 hypothetical protein YP_003822615.1 PFAM: protein of unknown function DUF1700; KEGG: cpy:Cphy_1271 hypothetical protein YP_003822616.1 PFAM: transcriptional regulator PadR family protein; KEGG: cpy:Cphy_1270 PadR-like family transcriptional regulator YP_003822617.1 PFAM: PspC domain protein; KEGG: mhu:Mhun_2935 phage shock protein C, PspC YP_003822618.1 KEGG: rsh:Rsph17029_2138 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7 YP_003822619.1 KEGG: sds:SDEG_1554 two-component response regulator; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003822620.1 KEGG: tit:Thit_0243 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein YP_003822621.1 KEGG: cpy:Cphy_2587 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein YP_003822622.1 PFAM: polysaccharide deacetylase; KEGG: cpy:Cphy_0334 hypothetical protein YP_003822623.1 KEGG: cpy:Cphy_2882 G3E family GTPase-like protein YP_003822624.1 PFAM: cobalamin synthesis protein P47K; KEGG: eel:EUBELI_01993 hypothetical protein YP_003822625.1 KEGG: cdf:CD2256 PTS system, EIIC component YP_003822626.1 KEGG: ele:Elen_0572 hypothetical protein YP_003822627.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: cth:Cthe_1659 TrkA-N YP_003822628.1 TIGRFAM: potassium uptake protein, TrkH family; KEGG: cth:Cthe_1658 TrkH family potassium uptake protein; PFAM: cation transporter YP_003822629.1 KEGG: ere:EUBREC_2613 hypothetical protein; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator YP_003822630.1 KEGG: tde:TDE2716 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003822631.1 KEGG: cbe:Cbei_1844 PTS system, fructose subfamily, IIC subunit; TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphotransferase system EIIC YP_003822632.1 KEGG: cbb:CLD_2876 fructose-1-phosphate kinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein YP_003822633.1 KEGG: cpy:Cphy_0285 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer YP_003822634.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: cbe:Cbei_0763 RpiR family transcriptional regulator YP_003822635.1 PFAM: metallophosphoesterase; KEGG: lin:lin2791 hypothetical protein YP_003822636.1 KEGG: cdf:CD0177 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase YP_003822637.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dhd:Dhaf_2764 protein of unknown function DUF6 transmembrane YP_003822638.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: gym:GYMC10_1668 4'-phosphopantetheinyl transferase YP_003822639.1 KEGG: mac:MA2009 beta-lactamase YP_003822640.1 PFAM: bifunctional deaminase-reductase domain protein; GCN5-related N-acetyltransferase; KEGG: cpy:Cphy_2575 GCN5-related N-acetyltransferase YP_003822641.1 TIGRFAM: enolase; KEGG: ere:EUBREC_2823 enolase; PFAM: Enolase-like YP_003822642.1 KEGG: cpy:Cphy_1131 hypothetical protein YP_003822643.1 TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: eel:EUBELI_01335 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_003822644.1 PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: afn:Acfer_1850 homocysteine S-methyltransferase YP_003822645.1 PFAM: Vitamin B12 dependent methionine synthase activation region; KEGG: str:Sterm_3080 vitamin B12 dependent methionine synthase activation region YP_003822646.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: fsu:Fisuc_0576 methylenetetrahydrofolate reductase (NAD(P)H); PFAM: methylenetetrahydrofolate reductase YP_003822647.1 KEGG: mmu:381833 proline-rich protein BstNI subfamily 1 YP_003822648.1 KEGG: hvo:HVO_1841 hypothetical protein YP_003822649.1 KEGG: eel:EUBELI_00733 cell division protein FtsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain YP_003822650.1 KEGG: cpy:Cphy_2472 hypothetical protein YP_003822651.1 KEGG: cpy:Cphy_2473 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_003822652.1 PFAM: cell cycle protein; KEGG: ere:EUBREC_2249 cell division membrane protein YP_003822653.1 KEGG: ere:EUBREC_2250 UDP-N-acetylmuramoylalanine-D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_003822654.1 KEGG: cpr:CPR_1828 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_003822655.1 manually curated; KEGG: cpy:Cphy_2476 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003822656.1 KEGG: cpy:Cphy_2477 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003822657.1 KEGG: eel:EUBELI_00727 hypothetical protein YP_003822658.1 KEGG: eel:EUBELI_00726 S-adenosyl-methyltransferase; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase YP_003822659.1 KEGG: eel:EUBELI_00725 MraZ protein; TIGRFAM: MraZ protein; PFAM: MraZ domain YP_003822660.1 PFAM: inner-membrane translocator; KEGG: drm:Dred_2766 inner-membrane translocator YP_003822661.1 PFAM: inner-membrane translocator; KEGG: drm:Dred_2767 inner-membrane translocator YP_003822662.1 KEGG: tte:TTE0458 ABC-type sugar (aldose) transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822663.1 PFAM: basic membrane lipoprotein; KEGG: gau:GAU_0026 lipoprotein YP_003822664.1 KEGG: bha:BH3679 two-component response regulator; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003822665.1 KEGG: cpy:Cphy_2008 multi-sensor signal transduction histidine kinase; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein YP_003822666.1 KEGG: spj:MGAS2096_Spy1117 hypothetical protein YP_003822668.1 KEGG: ere:EUBREC_2257 prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase YP_003822669.1 KEGG: eel:EUBELI_00724 hypothetical protein; TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP-binding protein HSR1-related YP_003822670.1 KEGG: cbl:CLK_0453 AIP processing-secretion protein; PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B YP_003822671.1 KEGG: cbl:CLK_0452 hypothetical protein YP_003822672.1 PFAM: ATP-binding region ATPase domain protein; KEGG: cbl:CLK_0451 hypothetical protein YP_003822673.1 KEGG: cbl:CLK_0450 LytTr DNA-binding domain-containing protein; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver YP_003822674.1 PFAM: Gp37Gp68 family protein; KEGG: cbh:CLC_0767 hypothetical protein YP_003822675.1 PFAM: transposase IS200-family protein; KEGG: cce:Ccel_3266 transposase IS200-family protein YP_003822676.1 KEGG: ere:EUBREC_2273 glutamate synthase, small subunit; TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003822677.1 KEGG: eel:EUBELI_01411 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein YP_003822678.1 KEGG: ere:EUBREC_2779 phosphotransferase system HPr protein; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr YP_003822679.1 PFAM: protein of unknown function DUF208; KEGG: cbe:Cbei_1289 hypothetical protein YP_003822680.1 KEGG: cpy:Cphy_3521 RpoD family RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein YP_003822681.1 KEGG: ere:EUBREC_0699 lipid kinase; PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region YP_003822682.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; KEGG: cpy:Cphy_3362 A/G-specific adenine glycosylase; SMART: HhH-GPD family protein YP_003822683.1 KEGG: ere:EUBREC_0058 transcriptional repressor of the biotin operon BirA; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein YP_003822684.1 KEGG: cpr:CPR_2048 hypothetical protein YP_003822685.1 TIGRFAM: ornithine carbamoyltransferase; KEGG: cpy:Cphy_0421 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region YP_003822686.1 PFAM: Patatin; KEGG: cpy:Cphy_0420 patatin YP_003822687.1 KEGG: ere:EUBREC_3261 membrane protease subunits, stomatin/prohibitin-like protein; PFAM: band 7 protein; SMART: band 7 protein YP_003822688.1 PFAM: protein of unknown function DUF107; KEGG: cpy:Cphy_2940 hypothetical protein YP_003822689.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: ere:EUBREC_1059 RNA methyltransferase, TrmH family, group 3 YP_003822690.1 KEGG: ere:EUBREC_1358 NAD synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003822691.1 KEGG: cpy:Cphy_3173 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003822692.1 KEGG: cpy:Cphy_0009 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_003822693.1 TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold-3 domain protein; KEGG: sdl:Sdel_0912 metal-dependent phosphohydrolase HD sub domain protein; SMART: metal-dependent phosphohydrolase HD region YP_003822694.1 KEGG: mag:amb3260 hypothetical protein YP_003822695.1 PFAM: sodium:neurotransmitter symporter; KEGG: ele:Elen_0404 sodium:neurotransmitter symporter YP_003822696.1 KEGG: cpy:Cphy_0535 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; glutaredoxin YP_003822697.1 KEGG: cpy:Cphy_0534 GTP-binding protein HflX; TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related YP_003822698.1 PFAM: TPR repeat-containing protein; KEGG: ere:EUBREC_2423 hypothetical protein YP_003822699.1 PFAM: deoxyUTP pyrophosphatase; KEGG: bsu:BSU17660 deoxyuridine 5'-triphosphate pyrophosphatase YP_003822700.1 KEGG: cpy:Cphy_2583 segregation and condensation protein B; TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB YP_003822701.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: eel:EUBELI_01166 segregation and condensation protein A YP_003822702.1 PFAM: metallophosphoesterase; KEGG: cpy:Cphy_2586 metallophosphoesterase YP_003822703.1 KEGG: sfu:Sfum_2518 inner-membrane translocator YP_003822704.1 KEGG: sga:GALLO_1246 transcriptional regulator YP_003822705.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; cell wall binding repeat-containing protein; KEGG: eel:EUBELI_02041 D-alanyl-D-alanine carboxypeptidase YP_003822706.1 PFAM: NUDIX hydrolase; KEGG: cth:Cthe_3126 NUDIX hydrolase YP_003822707.1 PFAM: small multi-drug export; KEGG: ere:EUBREC_1391 hypothetical protein YP_003822708.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: ere:EUBREC_1314 hypothetical protein YP_003822709.1 PFAM: glycosyl transferase family 2; KEGG: ere:EUBREC_1030 glycosyltransferase YP_003822710.1 PFAM: Abortive infection protein; KEGG: ere:EUBREC_2275 CAAX amino terminal protease family protein YP_003822711.1 KEGG: ere:EUBREC_2604 carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003822712.1 KEGG: cpy:Cphy_1847 polysaccharide deacetylase; TIGRFAM: delta-lactam-biosynthetic de-N-acetylase; PFAM: polysaccharide deacetylase YP_003822713.1 PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: eel:EUBELI_00169 sulfate permease, SulP family YP_003822714.1 KEGG: ere:EUBREC_1222 transcriptional regulator; PFAM: regulatory protein Crp; cyclic nucleotide-binding; SMART: regulatory protein Crp YP_003822715.1 KEGG: seq:SZO_05770 type II restriction endonuclease; PFAM: Restriction endonuclease FokI ; FokI endonuclease domain protein catalytic region; FokI endonuclease recognition region YP_003822716.1 KEGG: eel:EUBELI_20336 hypothetical protein YP_003822717.1 PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: afn:Acfer_1201 desulfoferrodoxin ferrous iron-binding region YP_003822718.1 KEGG: clo:HMPREF0868_0308 response regulator receiver domain protein; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn-helix, AraC domain YP_003822719.1 KEGG: clo:HMPREF0868_0288 ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein YP_003822720.1 PFAM: extracellular solute-binding protein family 1; KEGG: sth:STH1157 iron ABC transporter substrate-binding protein YP_003822721.1 KEGG: hypothetical protein YP_003822722.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: cpy:Cphy_3855 phosphomannomutase YP_003822723.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bhy:BHWA1_00871 permease BitE YP_003822724.1 KEGG: cth:Cthe_1587 ABC transporter; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_003822725.1 PFAM: extracellular solute-binding protein family 1; KEGG: sth:STH1157 iron ABC transporter substrate-binding protein YP_003822726.1 manually curated; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: ckr:CKR_0056 hypothetical protein; SMART: AAA ATPase YP_003822727.1 KEGG: ckr:CKR_0057 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822728.1 PFAM: regulatory protein TetR; KEGG: dhd:Dhaf_4628 transcriptional regulator, TetR family YP_003822729.1 KEGG: cpy:Cphy_2669 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_003822730.1 KEGG: cpy:Cphy_2670 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822731.1 KEGG: cpy:Cphy_2671 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003822732.1 KEGG: cpy:Cphy_2672 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003822733.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; metal dependent phophohydrolase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; Cache domain protein; PAS fold domain protein; metal-dependent phosphohydrolase HD sub domain; KEGG: amt:Amet_0967 diguanylate cyclase and metal dependent phosphohydrolase; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS domain containing protein; metal-dependent phosphohydrolase HD region YP_003822734.1 PFAM: SCP-like extracellular; Collagen triple helix repeat; KEGG: cpy:Cphy_1940 SCP-like extracellular YP_003822735.1 KEGG: ere:EUBREC_1362 ATPase of the PP-loop superfamily implicated in cell cycle control; PFAM: Rhodanese domain protein; PP-loop domain protein; SMART: Rhodanese domain protein YP_003822736.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: ere:EUBREC_1364 molybdopterin biosynthesis protein (MoeB) or thiamin-thiazole moiety synthesis (ThiF) YP_003822737.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: afn:Acfer_1412 hemerythrin HHE cation binding domain protein YP_003822738.1 KEGG: cpy:Cphy_1508 hypothetical protein YP_003822739.1 PFAM: Domain of unknown function DUF1858; KEGG: aoe:Clos_2131 hypothetical protein YP_003822740.1 KEGG: ere:EUBREC_3339 hydroxylamine reductase; TIGRFAM: hybrid cluster protein; PFAM: Prismane YP_003822741.1 KEGG: cth:Cthe_0034 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding YP_003822742.1 KEGG: eel:EUBELI_01506 hypothetical protein YP_003822743.1 KEGG: swo:Swol_1838 hypothetical protein YP_003822744.1 KEGG: cpy:Cphy_0285 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003822745.1 TIGRFAM: glycerate kinase; KEGG: shi:Shel_24350 glycerate kinase; PFAM: glycerate kinase YP_003822746.1 PFAM: Gluconate transporter; KEGG: eel:EUBELI_01263 gluconate:H+ symporter, GntP family YP_003822747.1 PFAM: sugar diacid recognition domain protein; KEGG: sugar diacid recognition YP_003822748.1 PFAM: Domain of unknown function DUF1858; KEGG: cce:Ccel_2420 hypothetical protein YP_003822749.1 SMART: AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: cbe:Cbei_1254 ATP-dependent protease La; PFAM: ATPase AAA; peptidase S16 lon domain protein YP_003822750.1 PFAM: regulatory protein TetR; KEGG: cbe:Cbei_1253 TetR family transcriptional regulator YP_003822751.1 KEGG: sgo:SGO_0424 tryptophan synthase, alpha subunit; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain YP_003822752.1 KEGG: lcb:LCABL_00780 SgaT protein YP_003822753.1 PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: sgo:SGO_0422 PTS system lactose family IIB subunit YP_003822754.1 KEGG: sgo:SGO_0421 phosphotransferase system mannitol/fructose-specific IIA domain-containing protein; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; PRD domain protein YP_003822755.1 PFAM: helix-turn-helix protein RpiR; KEGG: cbe:Cbei_4848 RpiR family transcriptional regulator YP_003822756.1 KEGG: yen:YE2832 hypothetical protein YP_003822757.1 PFAM: Microcystin LR degradation protein MlrC-like; MlrC domain protein; KEGG: rhi:NGR_b13230 MlrC C-terminus family YP_003822758.1 KEGG: cby:CLM_1020 PTS system, beta-glucoside-specific, IIABC component; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003822759.1 PFAM: glycoside hydrolase family 1; KEGG: lmh:LMHCC_2330 6-phospho-beta-galactosidase (beta-D-phosphogalactosidegalactohydrolase) (pgalase) (p-beta-gal) (pbg) YP_003822760.1 manually curated; KEGG: cbl:CLK_0651 hypothetical protein YP_003822761.1 KEGG: cbo:CBO0636 membrane protein YP_003822762.1 PFAM: protein of unknown function DUF454; KEGG: hap:HAPS_1302 hypothetical protein YP_003822763.1 KEGG: cpy:Cphy_3308 hypothetical protein YP_003822764.1 KEGG: cpy:Cphy_2122 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003822765.1 KEGG: cpy:Cphy_2121 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003822766.1 KEGG: cce:Ccel_1715 copper ion binding protein; TIGRFAM: copper ion binding protein; PFAM: Heavy metal transport/detoxification protein YP_003822767.1 KEGG: bth:BT_1003 hypothetical protein YP_003822768.1 KEGG: aoe:Clos_1066 heavy metal translocating P-type ATPase; TIGRFAM: copper-translocating P-type ATPase; copper ion binding protein; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase YP_003822769.1 PFAM: helix-turn-helix HxlR type; KEGG: cdl:CDR20291_3200 transcriptional regulator YP_003822770.1 KEGG: ere:EUBREC_2741 hypothetical protein YP_003822771.1 KEGG: cpy:Cphy_2120 hypothetical protein YP_003822772.1 PFAM: Heavy metal transport/detoxification protein; cytochrome c biogenesis protein transmembrane region; KEGG: cpy:Cphy_2119 heavy metal transport/detoxification protein YP_003822773.1 PFAM: chemotaxis protein CheC; KEGG: aoe:Clos_1214 CheC domain-containing protein YP_003822774.1 KEGG: aoe:Clos_1213 hemerythrin-like metal-binding protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein YP_003822775.1 KEGG: ere:EUBREC_2836 chorismate mutase; PFAM: shikimate kinase YP_003822776.1 KEGG: cth:Cthe_0039 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003822777.1 PFAM: protein of unknown function DUF438; Hemerythrin HHE cation binding domain protein; KEGG: cth:Cthe_1509 hypothetical protein YP_003822778.1 KEGG: cno:NT01CX_1246 ferredoxin YP_003822779.1 KEGG: cth:Cthe_0036 hydroxylamine reductase; TIGRFAM: hybrid cluster protein; PFAM: Prismane YP_003822780.1 KEGG: str:Sterm_2163 hypothetical protein YP_003822781.1 PFAM: aminotransferase class I and II; KEGG: msi:Msm_1516 histidinol-phosphate aminotransferase, HisC YP_003822782.1 PFAM: Methyltransferase type 11; KEGG: cbe:Cbei_0657 methyltransferase type 11 YP_003822784.1 KEGG: cpy:Cphy_0293 two component AraC family transcriptional regulator; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003822785.1 KEGG: cth:Cthe_3165 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003822786.1 PFAM: polysaccharide lyase 8 alpha-helical; metallophosphoesterase; polysaccharide lyase family 8; polysaccharide lyase family 8 domain protein; KEGG: pjd:Pjdr2_3195 hyaluronate lyase; SMART: LamG domain protein jellyroll fold domain protein YP_003822787.1 PFAM: cell wall binding repeat-containing protein; Ig domain protein; KEGG: efa:EF2229 hypothetical protein YP_003822788.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbb:CLD_3767 acetyltransferase YP_003822789.1 KEGG: ere:EUBREC_2850 AroE3; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase YP_003822790.1 PFAM: protein of unknown function DUF554; KEGG: dsy:DSY1063 hypothetical protein YP_003822791.1 PFAM: MgtC/SapB transporter; KEGG: cpy:Cphy_0202 MgtC/SapB transporter YP_003822792.1 KEGG: aac:Aaci_1751 hypothetical protein YP_003822793.1 KEGG: cpy:Cphy_0239 hypothetical protein YP_003822794.1 PFAM: protein of unknown function DUF1456; KEGG: btk:BT9727_0304 hypothetical protein YP_003822795.1 KEGG: cpy:Cphy_0384 hypothetical protein YP_003822796.1 PFAM: Cna B domain protein; Ig domain protein; cell wall binding repeat-containing protein; KEGG: cmi:CMM_2204 hypothetical protein YP_003822797.1 KEGG: cpy:Cphy_2818 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_003822798.1 KEGG: cth:Cthe_3013 hydrogenase expression/formation protein HypE; TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_003822799.1 KEGG: cth:Cthe_3014 hydrogenase formation HypD protein; TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein YP_003822800.1 KEGG: cpy:Cphy_1739 hydrogenase assembly chaperone HypC/HupF; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC) YP_003822801.1 KEGG: cth:Cthe_3016 (NiFe) hydrogenase maturation protein HypF; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein YP_003822802.1 PFAM: Domain of unknown function DUF1801; KEGG: gym:GYMC10_1324 domain of unknown function DUF1801 YP_003822803.1 KEGG: ctc:CTC01906 transcriptional regulatory protein; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003822804.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: ctc:CTC01905 sensory transduction protein kinase; SMART: histidine kinase A domain protein; ATP-binding region ATPase domain protein YP_003822805.1 PFAM: AMP-dependent synthetase and ligase; KEGG: eel:EUBELI_00114 hypothetical protein YP_003822806.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: ele:Elen_2183 diaminopimelate decarboxylase YP_003822807.1 KEGG: eel:EUBELI_00116 hypothetical protein YP_003822808.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: ele:Elen_2185 membrane bound O-acyl transferase MBOAT family protein YP_003822809.1 KEGG: ele:Elen_2186 hypothetical protein YP_003822810.1 PFAM: aminotransferase class I and II; KEGG: ere:EUBREC_1366 bifunctional HTH-domain containing protein/aminotransferase YP_003822811.1 KEGG: ere:EUBREC_2741 hypothetical protein YP_003822812.1 KEGG: cbe:Cbei_3259 oxidoreductase domain-containing protein; manually curated; PFAM: oxidoreductase domain protein YP_003822813.1 KEGG: cbt:CLH_3320 hypothetical protein YP_003822814.1 KEGG: cpy:Cphy_1464 carbonic anhydrase; PFAM: carbonic anhydrase YP_003822815.1 TIGRFAM: methionine-R-sulfoxide reductase; peptide methionine sulfoxide reductase; KEGG: amu:Amuc_0906 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; Methionine sulfoxide reductase B YP_003822816.1 PFAM: NUDIX hydrolase; KEGG: cpf:CPF_0882 MutT/NUDIX NTP pyrophosphatase YP_003822817.1 TIGRFAM: DNA-3-methyladenine glycosylase; KEGG: dhd:Dhaf_1650 DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG) YP_003822818.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lsp:Bsph_4693 protein PhnB YP_003822819.1 KEGG: cth:Cthe_1477 dCTP deaminase; TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase YP_003822820.1 PFAM: GCN5-related N-acetyltransferase; KEGG: fma:FMG_1447 hypothetical protein YP_003822821.1 KEGG: cbe:Cbei_3176 aspartate racemase; TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase YP_003822822.1 PFAM: amine oxidase; KEGG: cbe:Cbei_4105 amine oxidase YP_003822823.1 KEGG: cth:Cthe_3222 hypothetical protein YP_003822824.1 PFAM: protein of unknown function UPF0074; KEGG: hau:Haur_1206 BadM/Rrf2 family transcriptional regulator YP_003822825.1 KEGG: cbi:CLJ_B3135 xanthine dehydrogenase family protein, molybdopterin-binding subunit; TIGRFAM: selenium-dependent molybdenum hydroxylase 1; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; [2Fe-2S]-binding domain protein; ferredoxin; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead YP_003822826.1 TIGRFAM: methyltransferase FkbM family; KEGG: mla:Mlab_1495 hypothetical protein YP_003822827.1 PFAM: protein of unknown function DUF606; KEGG: cpy:Cphy_1299 hypothetical protein YP_003822828.1 KEGG: cpy:Cphy_1300 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding YP_003822829.1 KEGG: cac:CAC3417 flavodoxin YP_003822830.1 PFAM: transcriptional regulator PadR family protein; KEGG: gvi:glr4157 hypothetical protein YP_003822831.1 KEGG: ckr:CKR_2320 hypothetical protein; TIGRFAM: H+ Antiporter protein; PFAM: major facilitator superfamily MFS_1 YP_003822832.1 KEGG: cpy:Cphy_1008 MerR family transcriptional regulator; PFAM: TipAS antibiotic-recognition domain protein; regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR YP_003822833.1 PFAM: aldo/keto reductase; KEGG: pjd:Pjdr2_0253 aldo/keto reductase YP_003822834.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cce:Ccel_3337 iron-containing alcohol dehydrogenase YP_003822835.1 KEGG: cce:Ccel_3338 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR YP_003822836.1 PFAM: S-layer domain protein; cell wall binding repeat-containing protein; KEGG: cts:Ctha_1865 filamentous haemagglutinin family outer membrane protein YP_003822837.1 KEGG: amt:Amet_3805 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003822838.1 KEGG: amt:Amet_3804 response regulator receiver/SARP domain-containing protein; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver YP_003822839.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: ere:EUBREC_1223 DNA-binding protein YP_003822840.1 PFAM: protein of unknown function DUF134; KEGG: amt:Amet_1463 hypothetical protein YP_003822841.1 KEGG: aac:Aaci_3061 NHL repeat containing protein YP_003822842.1 PFAM: protein of unknown function DUF985; KEGG: cpy:Cphy_1672 hypothetical protein YP_003822843.1 KEGG: cbt:CLH_1349 xanthine permease; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease YP_003822844.1 PFAM: amidohydrolase; KEGG: cbk:CLL_A0628 hydroxydechloroatrazine ethylaminohydrolase YP_003822845.1 PFAM: membrane protein of unknown function; KEGG: cpy:Cphy_2421 membrane protein YP_003822846.1 KEGG: tva:TVAG_035540 Adaptin N terminal region family protein YP_003822847.1 KEGG: cpy:Cphy_2420 hypothetical protein YP_003822848.1 PFAM: Protein of unknown function DUF2089; KEGG: cpy:Cphy_2419 hypothetical protein YP_003822849.1 PFAM: nitroreductase; KEGG: cth:Cthe_0579 nitroreductase YP_003822850.1 KEGG: cbl:CLK_2252 drug resistance ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822851.1 KEGG: cbi:CLJ_B0852 hypothetical protein YP_003822852.1 KEGG: bmy:Bm1_13225 pherophorin-dz1 protein YP_003822853.1 KEGG: bsu:BSU39110 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003822854.1 KEGG: amt:Amet_3776 S-adenosyl-methyltransferase MraW; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase YP_003822855.1 KEGG: cpy:Cphy_1824 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_003822856.1 PFAM: regulatory protein TetR; KEGG: smc:SmuNN2025_1455 transcriptional regulator YP_003822857.1 PFAM: 67 kDa myosin-cross-reactive antigen family protein; KEGG: smu:SMU.515 myosin-cross-reactive antigen YP_003822858.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cpy:Cphy_1744 short-chain dehydrogenase/reductase SDR YP_003822859.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Acetoacetate decarboxylase; KEGG: cpy:Cphy_1743 NADH:flavin oxidoreductase/NADH oxidase YP_003822860.1 KEGG: cpy:Cphy_1742 transcriptional regulator, CdaR YP_003822861.1 PFAM: protein of unknown function DUF188; KEGG: cac:CAC2825 hypothetical protein YP_003822862.1 KEGG: swo:Swol_0285 hypothetical protein YP_003822863.1 KEGG: dsy:DSY4671 hypothetical protein; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_003822864.1 KEGG: dsy:DSY4598 hypothetical protein; TIGRFAM: arsenite-activated ATPase ArsA YP_003822865.1 PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: cby:CLM_0906 arsenical resistence operon repressor ArsD YP_003822866.1 KEGG: cpy:Cphy_2153 arsenical-resistance protein; TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter YP_003822867.1 KEGG: aoe:Clos_1112 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003822868.1 KEGG: tad:TRIADDRAFT_21652 hypothetical protein YP_003822869.1 PFAM: amidohydrolase 2; KEGG: pho:PH0093 hypothetical protein YP_003822870.1 PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: DNA methyltransferase, DNA binding domain-containing protein YP_003822871.1 PFAM: conserved hypothetical protein; KEGG: dae:Dtox_0463 hypothetical protein YP_003822872.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bth:BT_1587 hypothetical protein YP_003822873.1 PFAM: alpha/beta hydrolase fold; KEGG: cbe:Cbei_3238 alpha/beta hydrolase fold YP_003822874.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: dhd:Dhaf_2888 cupin 2 conserved barrel domain protein YP_003822876.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dae:Dtox_0635 GCN5-related N-acetyltransferase YP_003822877.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dsy:DSY4708 hypothetical protein YP_003822878.1 KEGG: cbt:CLH_1537 hypothetical protein; TIGRFAM: Protein of unknown function DUF2196; PFAM: Protein of unknown function DUF2196 YP_003822879.1 KEGG: aoe:Clos_0751 rifampin ADP-ribosylating transferase YP_003822880.1 KEGG: llk:LLKF_2010 uracil DNA glycosylase superfamily protein; manually curated; PFAM: Uracil-DNA glycosylase superfamily YP_003822881.1 PFAM: peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; KEGG: cbl:CLK_1713 choloylglycine hydrolase family protein YP_003822882.1 KEGG: ssb:SSUBM407_0980 chloramphenicol acetyltransferase; PFAM: chloramphenicol acetyltransferase YP_003822883.1 PFAM: metallophosphoesterase; KEGG: sun:SUN_0863 hypothetical protein YP_003822884.1 KEGG: dhd:Dhaf_2424 signal transduction histidine kinase regulating citrate/malate metabolism YP_003822885.1 KEGG: tde:TDE0033 DNA-binding response regulator; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver YP_003822886.1 KEGG: sjp:SJA_C1-03460 transglutaminase-like protein YP_003822887.1 PFAM: helix-turn-helix HxlR type; KEGG: sss:SSUSC84_1963 transcriptional regulator protein YP_003822888.1 KEGG: sss:SSUSC84_1964 hypothetical protein YP_003822889.1 manually curated; KEGG: dhd:Dhaf_2234 rubredoxin-type Fe(Cys)4 protein YP_003822890.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dhd:Dhaf_2235 rubrerythrin YP_003822891.1 KEGG: clo:HMPREF0868_0536 threonine--tRNA ligase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; TGS domain protein; Anticodon-binding domain protein YP_003822892.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: paa:Paes_0313 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003822893.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: ckr:CKR_0559 hypothetical protein YP_003822894.1 PFAM: ATPase-like, ParA/MinD; KEGG: cce:Ccel_0628 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_003822895.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: mst:Msp_0529 hypothetical protein YP_003822896.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: msi:Msm_0263 nitrogen fixation protein, NifU YP_003822897.1 PFAM: protein of unknown function DUF134; KEGG: cbi:CLJ_B1488 hypothetical protein YP_003822898.1 PFAM: protein of unknown function DUF89; KEGG: hor:Hore_21010 hypothetical protein YP_003822899.1 TIGRFAM: peptide deformylase; KEGG: cbf:CLI_2571 peptide deformylase; PFAM: formylmethionine deformylase YP_003822900.1 KEGG: tit:Thit_1682 hypothetical protein YP_003822901.1 PFAM: ferric-uptake regulator; KEGG: ckr:CKR_0557 hypothetical protein YP_003822902.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: ckr:CKR_0554 hypothetical protein YP_003822903.1 KEGG: cbi:CLJ_B2434 CobQ/CobB/MinD/ParA family protein YP_003822904.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: cbl:CLK_1664 dinitrogenase iron-molybdenum cofactor family protein YP_003822905.1 TIGRFAM: S-adenosylmethionine synthetase; KEGG: cpy:Cphy_3874 methionine adenosyltransferase; PFAM: S-adenosylmethionine synthetase YP_003822906.1 KEGG: cbe:Cbei_1957 thioesterase superfamily protein YP_003822907.1 KEGG: ere:EUBREC_2168 hypothetical protein YP_003822908.1 KEGG: lmy:LM5923_1823 hypothetical protein YP_003822910.1 manually curated; KEGG: aac:Aaci_2981 hypothetical protein YP_003822911.1 KEGG: ckr:CKR_3134 hypothetical protein; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003822912.1 KEGG: ckr:CKR_3133 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003822913.1 KEGG: eat:EAT1b_1734 hypothetical protein YP_003822914.1 KEGG: ckr:CKR_3132 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822915.1 PFAM: protein of unknown function DUF214; KEGG: cdl:CDR20291_0863 hypothetical protein YP_003822916.1 KEGG: dsy:DSY0038 hypothetical protein YP_003822917.1 TIGRFAM: redox-active disulfide protein 2; KEGG: dae:Dtox_4282 redox-active disulfide protein 2 YP_003822918.1 KEGG: dsy:DSY4677 hypothetical protein YP_003822919.1 PFAM: permease; KEGG: cce:Ccel_1066 permease YP_003822920.1 KEGG: cce:Ccel_1065 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003822921.1 KEGG: pfh:PFHG_01708 conserved hypothetical protein YP_003822922.1 PFAM: Resolvase domain; Recombinase; KEGG: lmy:LM5923_1807 DNA recombinase YP_003822923.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dat:HRM2_38790 GGDEF domain family protein; SMART: GGDEF domain containing protein YP_003822924.1 KEGG: cbh:CLC_0591 hemerythrin-like metal-binding domain-containing protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein YP_003822925.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; metal-dependent phosphohydrolase HD sub domain; KEGG: amt:Amet_0967 diguanylate cyclase and metal dependent phosphohydrolase; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; metal-dependent phosphohydrolase HD region YP_003822926.1 KEGG: dae:Dtox_1522 resolvase domain protein YP_003822927.1 PFAM: Resolvase domain; Recombinase; KEGG: lmy:LM5923_1807 DNA recombinase YP_003822928.1 PFAM: Recombinase; KEGG: lmy:LM5923_1808 hypothetical protein YP_003822929.1 PFAM: Resolvase domain; Recombinase; KEGG: lmy:LM5923_1809 site-specific DNA recombinase YP_003822930.1 KEGG: dae:Dtox_1523 hypothetical protein YP_003822931.1 KEGG: dsy:DSY3431 hypothetical protein YP_003822932.1 KEGG: spi:MGAS10750_Spy1715 hypothetical protein YP_003822933.1 KEGG: hmg:100198236 similar to viral A-type inclusion protein YP_003822934.1 KEGG: lel:LELG_00430 hypothetical protein YP_003822935.1 KEGG: fma:FMG_0223 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003822936.1 PFAM: protein of unknown function DUF955; KEGG: drm:Dred_3017 hypothetical protein YP_003822937.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: bcr:BCAH187_E0055 peptidase C14 caspase catalytic subunit P20 YP_003822938.1 PFAM: Domain of unknown function DUF1863; KEGG: bcr:BCAH187_E0054 nuclease YP_003822939.1 KEGG: dhd:Dhaf_4660 domain of unknown function DUF1863 YP_003822940.1 KEGG: cac:CAC1938 HD superfamily hydrolase YP_003822941.1 manually curated; KEGG: gme:Gmet_0138 hypothetical protein YP_003822942.1 KEGG: cyn:Cyan7425_1673 RNA polymerase, sigma 70 subunit, RpoD subfamily YP_003822943.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: syp:SYNPCC7002_A0399 ADP-ribosylglycohydrolase YP_003822944.1 KEGG: deg:DehalGT_0079 hypothetical protein YP_003822945.1 KEGG: eel:EUBELI_02013 hypothetical protein YP_003822946.1 KEGG: eel:EUBELI_02014 hypothetical protein YP_003822947.1 KEGG: eel:EUBELI_02015 hypothetical protein YP_003822948.1 KEGG: cdl:CDR20291_2989 hypothetical protein YP_003822949.1 KEGG: ere:EUBREC_1720 hypothetical protein YP_003822950.1 KEGG: hypothetical protein YP_003822951.1 KEGG: maq:Maqu_2394 hypothetical protein YP_003822952.1 KEGG: mst:Msp_0929 helicase YP_003822953.1 KEGG: dsy:DSY0680 hypothetical protein YP_003822954.1 PFAM: PglZ domain protein; KEGG: chy:CHY_2652 hypothetical protein YP_003822955.1 KEGG: bcl:ABC1347 hypothetical protein YP_003822956.1 PFAM: SEFIR domain protein; KEGG: cth:Cthe_1135 SEFIR domain-containing protein YP_003822957.1 KEGG: chy:CHY_2653 restriction enzyme YP_003822958.1 KEGG: ptm:GSPATT00033115001 hypothetical protein YP_003822959.1 KEGG: chy:CHY_2654 hypothetical protein YP_003822960.1 PFAM: Domain of unknown function DUF1788; KEGG: msi:Msm_1750 hypothetical protein YP_003822961.1 PFAM: Protein of unkown function DUF1819 inner membrane; KEGG: msi:Msm_1749 hypothetical protein YP_003822962.1 KEGG: cce:Ccel_2865 transcriptional regulator, XRE family YP_003822963.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dat:HRM2_26360 phage-specific recombinase/integrase XerD YP_003822964.1 PFAM: integrase family protein; KEGG: dat:HRM2_26350 predicted phage-specific integrase YP_003822965.1 PFAM: integrase family protein; KEGG: dat:HRM2_26340 XerC YP_003822966.1 KEGG: dsy:DSY0027 hypothetical protein YP_003822967.1 PFAM: TRAG family protein; KEGG: dsy:DSY0028 hypothetical protein YP_003822968.1 KEGG: dsy:DSY0029 hypothetical protein YP_003822970.1 KEGG: dsy:DSY0030 hypothetical protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein YP_003822971.1 KEGG: dsy:DSY0031 hypothetical protein YP_003822972.1 KEGG: dae:Dtox_1510 hypothetical protein YP_003822973.1 KEGG: cce:Ccel_2748 hypothetical protein YP_003822974.1 KEGG: lmy:LM5923_1823 hypothetical protein YP_003822975.1 KEGG: lmy:LM5923_1824 hypothetical protein YP_003822976.1 PFAM: NLP/P60 protein; KEGG: dsy:DSY0034 hypothetical protein YP_003822977.1 PFAM: AIG2 family protein; KEGG: dsy:DSY0035 hypothetical protein YP_003822978.1 KEGG: dsy:DSY0036 hypothetical protein YP_003822979.1 KEGG: dsy:DSY0037 hypothetical protein YP_003822980.1 KEGG: dsy:DSY0038 hypothetical protein YP_003822981.1 KEGG: dsy:DSY0042 hypothetical protein YP_003822982.1 KEGG: dsy:DSY0043 hypothetical protein YP_003822983.1 KEGG: dsy:DSY0045 hypothetical protein YP_003822984.1 KEGG: dae:Dtox_1496 hypothetical protein YP_003822985.1 PFAM: protein of unknown function DUF606; KEGG: cdf:CD1416 hypothetical protein YP_003822986.1 KEGG: cdf:CD2273 hypothetical protein; TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118 YP_003822987.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: dhd:Dhaf_0561 protein of unknown function DUF21 YP_003822988.1 PFAM: aminoglycoside phosphotransferase; KEGG: art:Arth_4256 aminoglycoside phosphotransferase YP_003822989.1 PFAM: ABC transporter; KEGG: pmo:Pmob_0666 ABC transporter YP_003822990.1 KEGG: pfu:PF1889 daunorubicin resistance ATP-binding protein DrrA; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822991.1 KEGG: tme:Tmel_0407 ABC transporter YP_003822992.1 KEGG: tpe:Tpen_1400 daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_003822993.1 PFAM: Chromate resistance exported protein; KEGG: sfu:Sfum_0097 hypothetical protein YP_003822994.1 KEGG: art:Arth_4253 hypothetical protein YP_003822995.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dhd:Dhaf_2294 protein of unknown function DUF6 transmembrane YP_003822996.1 KEGG: lmy:LM5923_1834 hypothetical protein YP_003822997.1 KEGG: ckr:CKR_3427 hypothetical protein YP_003822998.1 KEGG: dsy:DSY0053 hypothetical protein YP_003822999.1 KEGG: dsy:DSY0054 hypothetical protein YP_003823000.1 KEGG: hmo:HM1_0591 hypothetical protein YP_003823001.1 KEGG: lmy:LM5923_1839 hypothetical protein YP_003823002.1 KEGG: dsy:DSY0057 hypothetical protein YP_003823003.1 PFAM: type II secretion system protein E; KEGG: dsy:DSY0058 hypothetical protein YP_003823004.1 KEGG: lmy:LM5923_1842 hypothetical protein YP_003823005.1 KEGG: dsy:DSY0060 hypothetical protein; TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein YP_003823006.1 KEGG: spe:Spro_0563 permease YjgP/YjgQ family protein YP_003823007.1 PFAM: peptidase A24A prepilin type IV; KEGG: dsy:DSY0061 hypothetical protein YP_003823008.1 KEGG: lmy:LM5923_1845 hypothetical protein YP_003823009.1 PFAM: SpoVG family protein; KEGG: dsy:DSY0063 hypothetical protein YP_003823010.1 KEGG: lmy:LM5923_1847 hypothetical protein YP_003823011.1 KEGG: dsy:DSY0064 hypothetical protein YP_003823012.1 KEGG: dsy:DSY0065 hypothetical protein YP_003823013.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: dsy:DSY0067 hypothetical protein YP_003823014.1 KEGG: dsy:DSY0068 hypothetical protein YP_003823015.1 KEGG: dhd:Dhaf_2443 hypothetical protein YP_003823016.1 KEGG: lmy:LM5923_1854 hypothetical protein YP_003823017.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: cbe:Cbei_3562 transposase IS116/IS110/IS902 family protein YP_003823018.1 KEGG: vfm:VFMJ11_A0695 hypothetical protein YP_003823019.1 KEGG: cpy:Cphy_1654 RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: DNA methylase N-4/N-6 domain protein YP_003823020.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: eel:EUBELI_02021 prolyl-tRNA synthetase / glutamyl-tRNA synthetase YP_003823022.1 KEGG: dhd:Dhaf_2022 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003823023.1 PFAM: creatinase; peptidase M24; KEGG: cdf:CD2261 peptidase YP_003823024.1 KEGG: cpy:Cphy_1543 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_003823025.1 KEGG: pdi:BDI_1769 hypothetical protein; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_003823026.1 PFAM: chloramphenicol acetyltransferase; KEGG: cbk:CLL_A2166 chloramphenicol O-acetyltransferase YP_003823027.1 KEGG: pfa:PF07_0086 hypothetical protein YP_003823028.1 KEGG: cpy:Cphy_1694 triple helix repeat-containing collagen YP_003823029.1 PFAM: periplasmic binding protein; KEGG: bpf:BpOF4_07395 hypothetical protein YP_003823030.1 KEGG: bbe:BBR47_57000 ABC transporter ATP binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823031.1 PFAM: transport system permease protein; KEGG: bcy:Bcer98_0360 transport system permease protein YP_003823032.1 PFAM: transport system permease protein; KEGG: bpf:BpOF4_07410 ferrichrome ABC transporter (permease) YP_003823033.1 KEGG: cbi:CLJ_B1094 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003823034.1 KEGG: pkn:PKH_146380 myosin A tail domain interacting protein MTIP YP_003823035.1 KEGG: pml:ATP_00185 chaperonin GroEL YP_003823036.1 KEGG: spu:589357 hypothetical LOC589357 YP_003823037.1 PFAM: ROK family protein; KEGG: cpy:Cphy_1578 ROK family protein YP_003823038.1 TIGRFAM: mannose-6-phosphate isomerase, class I; KEGG: cpy:Cphy_3377 mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I YP_003823039.1 KEGG: cpy:Cphy_2744 hypothetical protein YP_003823040.1 KEGG: cce:Ccel_3193 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003823041.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sss:SSUSC84_1097 gluconate 5-dehydrogenase YP_003823042.1 KEGG: cpy:Cphy_0535 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein YP_003823043.1 PFAM: cell division protein FtsA; KEGG: cbe:Cbei_1385 cell division protein FtsA YP_003823044.1 KEGG: cpy:Cphy_3237 hypothetical protein YP_003823045.1 KEGG: lmy:LM5923_1128 hypothetical protein YP_003823046.1 PFAM: Resolvase domain; Recombinase; KEGG: ere:EUBREC_1255 site-specific recombinase YP_003823047.1 KEGG: eel:EUBELI_00514 hypothetical protein YP_003823048.1 KEGG: mdo:100018988 hypothetical protein LOC100018988 YP_003823049.1 PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; KEGG: cpy:Cphy_1098 FAD dependent oxidoreductase YP_003823050.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: cbe:Cbei_2460 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: EAL domain protein; GGDEF domain containing protein YP_003823051.1 KEGG: cdl:CDR20291_1198 regulatory protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein YP_003823052.1 PFAM: Peptidase M23; KEGG: eel:EUBELI_00044 hypothetical protein YP_003823053.1 PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; KEGG: cbe:Cbei_0635 5'-nucleotidase domain-containing protein YP_003823054.1 KEGG: tit:Thit_0139 stage II sporulation protein D; TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein YP_003823055.1 KEGG: eel:EUBELI_00043 starch phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003823056.1 KEGG: ere:EUBREC_1053 isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase YP_003823057.1 TIGRFAM: nicotinate phosphoribosyltransferase; KEGG: cpy:Cphy_3836 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like YP_003823058.1 KEGG: cpy:Cphy_1044 hypothetical protein YP_003823059.1 PFAM: acyltransferase 3; KEGG: ent:Ent638_2581 acyltransferase 3 YP_003823060.1 KEGG: cpy:Cphy_1809 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal protein L25-like YP_003823061.1 PFAM: protein of unknown function DUF81; KEGG: lrl:LC705_00062 predicted ORF YP_003823062.1 KEGG: lrl:LC705_00065 hypothetical protein YP_003823063.1 PFAM: cyclic nucleotide-binding; KEGG: str:Sterm_1784 transcriptional regulator, Crp/Fnr family YP_003823064.1 KEGG: eel:EUBELI_00570 hypothetical protein YP_003823065.1 KEGG: ckr:CKR_2192 hypothetical protein YP_003823066.1 KEGG: ckr:CKR_2193 hypothetical protein YP_003823067.1 PFAM: protein of unknown function DUF115; KEGG: ckr:CKR_2191 hypothetical protein YP_003823068.1 KEGG: ckl:CKL_2478 hypothetical protein YP_003823069.1 KEGG: cbt:CLH_1458 hypothetical protein YP_003823070.1 KEGG: ckr:CKR_2190 hypothetical protein YP_003823071.1 KEGG: cbk:CLL_A1550 hypothetical protein YP_003823072.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: cth:Cthe_2645 NAD-dependent epimerase/dehydratase YP_003823073.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: ckr:CKR_2182 hypothetical protein YP_003823074.1 PFAM: Nucleotidyl transferase; CBS domain containing protein; KEGG: ckr:CKR_2181 hypothetical protein YP_003823075.1 TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; KEGG: cth:Cthe_2642 hexapaptide repeat-containing transferase YP_003823076.1 TIGRFAM: N-acetylneuraminate synthase; KEGG: pmx:PERMA_1627 N-acetylneuraminate synthase; PFAM: N-acetylneuraminic acid synthase domain YP_003823077.1 KEGG: hor:Hore_16940 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_003823078.1 KEGG: ckr:CKR_2180 hypothetical protein; PFAM: acylneuraminate cytidylyltransferase YP_003823079.1 KEGG: cpy:Cphy_3485 peptidase T-like protein; TIGRFAM: peptidase T-like protein; PFAM: peptidase dimerisation domain protein; peptidase M20 YP_003823080.1 KEGG: eel:EUBELI_00048 cysteine synthase; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003823081.1 PFAM: Rubrerythrin; KEGG: cbt:CLH_2853 rubrerythrin YP_003823082.1 PFAM: aminotransferase class I and II; KEGG: vpr:Vpar_0267 aminotransferase class I and II YP_003823083.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: amt:Amet_3707 cystathionine gamma-synthase YP_003823084.1 KEGG: cpy:Cphy_1824 BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_003823085.1 PFAM: regulatory protein LysR; KEGG: cpy:Cphy_1229 MarR family transcriptional regulator YP_003823086.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: cpy:Cphy_0010 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_003823087.1 KEGG: cdl:CDR20291_1529 superoxide dismutase [Mn]; PFAM: Manganese/iron superoxide dismutase-like YP_003823088.1 KEGG: cpy:Cphy_3261 hypothetical protein YP_003823089.1 KEGG: cpy:Cphy_3260 hypothetical protein YP_003823090.1 PFAM: NLP/P60 protein; KEGG: ere:EUBREC_0552 NLP/P60 family YP_003823091.1 KEGG: cpe:CPE1459 hypothetical protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003823092.1 KEGG: cpy:Cphy_2934 oxidoreductase; TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003823093.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: eel:EUBELI_00916 ferredoxin--NADP+ reductase YP_003823094.1 PFAM: dihydrofolate reductase region; KEGG: ere:EUBREC_1249 dihydrofolate reductase YP_003823095.1 KEGG: cpy:Cphy_3411 hypothetical protein YP_003823096.1 PFAM: SMC domain protein; KEGG: cpy:Cphy_1246 SMC domain-containing protein YP_003823097.1 KEGG: cpy:Cphy_1245 nuclease SbcCD, D subunit; TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase YP_003823098.1 TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase; helicase domain protein; RQC domain; HRDC domain protein; KEGG: cpy:Cphy_1154 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase ; helicase domain protein; HRDC domain protein YP_003823099.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cbl:CLK_0334 drug/metabolite exporter family protein YP_003823100.1 PFAM: protein of unknown function DUF1706; KEGG: cno:NT01CX_2000 hypothetical protein YP_003823101.1 KEGG: cdl:CDR20291_0446 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003823102.1 KEGG: cbe:Cbei_2028 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003823103.1 KEGG: nth:Nther_0252 response regulator receiver protein YP_003823104.1 PFAM: TrkA-N domain protein; KEGG: cce:Ccel_2083 TrkA-N domain protein YP_003823105.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: nth:Nther_0254 TrkA-N domain protein YP_003823106.1 PFAM: cation transporter; KEGG: nth:Nther_0255 cation transporter YP_003823107.1 KEGG: cce:Ccel_3233 isoprenylcysteine carboxyl methyltransferase YP_003823108.1 PFAM: sodium/hydrogen exchanger; KEGG: cdl:CDR20291_0579 Na(+)/H(+) antiporter YP_003823109.1 KEGG: dhd:Dhaf_2878 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003823110.1 KEGG: cbt:CLH_0377 GMP synthase; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I YP_003823111.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: eel:EUBELI_01808 excinuclease ABC subunit A; SMART: AAA ATPase YP_003823112.1 KEGG: ana:alr3997 serine/threonine kinase YP_003823113.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: tte:TTE0216 N-acetylglucosamine kinase YP_003823114.1 PFAM: sugar isomerase (SIS); KEGG: bcl:ABC4074 hypothetical protein YP_003823115.1 PFAM: glycoside hydrolase family 9; KEGG: lin:lin0032 hypothetical protein YP_003823116.1 PFAM: Endoribonuclease L-PSP; KEGG: btl:BALH_1840 endoribonuclease L-PSP YP_003823117.1 KEGG: mta:Moth_1302 dihydroorotase; PFAM: amidohydrolase YP_003823118.1 PFAM: alanine racemase domain protein; KEGG: sti:Sthe_1361 alanine racemase domain protein YP_003823119.1 PFAM: glycoside hydrolase family 2 sugar binding; KEGG: pjd:Pjdr2_5065 glycoside hydrolase family 2 sugar binding YP_003823120.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gym:GYMC10_1399 binding-protein-dependent transport systems inner membrane component YP_003823121.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gym:GYMC10_1286 binding-protein-dependent transport systems inner membrane component YP_003823122.1 PFAM: extracellular solute-binding protein family 1; KEGG: gym:GYMC10_1287 extracellular solute-binding protein family 1 YP_003823123.1 PFAM: YheO domain protein; KEGG: efa:EF2583 hypothetical protein YP_003823124.1 PFAM: SMC domain protein; KEGG: ere:EUBREC_0406 hypothetical protein YP_003823125.1 KEGG: drm:Dred_0582 hypothetical protein YP_003823126.1 KEGG: amt:Amet_2150 hypothetical protein YP_003823127.1 SMART: AAA ATPase; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: cpy:Cphy_0326 ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA YP_003823128.1 TIGRFAM: CTP synthase; KEGG: eel:EUBELI_01684 CTP synthase; PFAM: CTP synthase-like; glutamine amidotransferase class-I YP_003823129.1 PFAM: Extracellular ligand-binding receptor; KEGG: cbe:Cbei_1767 extracellular ligand-binding receptor YP_003823130.1 PFAM: inner-membrane translocator; KEGG: cbe:Cbei_1763 inner-membrane translocator YP_003823131.1 PFAM: inner-membrane translocator; KEGG: aoe:Clos_2500 inner-membrane translocator YP_003823132.1 KEGG: cbe:Cbei_1765 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823133.1 KEGG: cbe:Cbei_1766 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823134.1 KEGG: ere:EUBREC_1937 N-acetylmuramoyl-L-alanine amidase, C-terminus; PFAM: NLP/P60 protein; SH3 type 3 domain protein; SMART: SH3 domain protein YP_003823135.1 KEGG: ere:EUBREC_1939 bifunctional riboflavin kinase/FMN adenylyltransferase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase YP_003823136.1 KEGG: ere:EUBREC_1940 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein YP_003823137.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: eel:EUBELI_00896 hypothetical protein YP_003823138.1 KEGG: eel:EUBELI_00895 ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A YP_003823139.1 KEGG: cpy:Cphy_2774 translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; elongation factor Tu domain 2 protein YP_003823140.1 PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: eel:EUBELI_00893 hypothetical protein YP_003823141.1 PFAM: protein of unknown function DUF448; KEGG: cpy:Cphy_2776 hypothetical protein YP_003823142.1 KEGG: ere:EUBREC_1946 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein YP_003823143.1 PFAM: protein of unknown function DUF150; KEGG: cpy:Cphy_2778 hypothetical protein YP_003823144.1 KEGG: cpy:Cphy_0803 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823145.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_0802 binding-protein-dependent transport systems inner membrane component YP_003823146.1 KEGG: cbk:CLL_A2060 transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003823147.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: cbe:Cbei_0983 phosphoglucomutase/phosphomannomutase alpha/beta/subunit YP_003823148.1 PFAM: glycosidase related protein; KEGG: cbt:CLH_1546 unknown conserved protein YP_003823149.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbk:CLL_A2062 sugar ABC transporter YP_003823150.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbt:CLH_1544 sugar ABC transporter permease YP_003823151.1 KEGG: cbt:CLH_1543 sugar ABC transporter YP_003823152.1 KEGG: cbt:CLH_2709 glycerol-1-phosphate dehydrogenase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003823153.1 PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: str:Sterm_4066 glycoside hydrolase family 2 sugar binding protein YP_003823154.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pjd:Pjdr2_4062 binding-protein-dependent transport systems inner membrane component YP_003823155.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pjd:Pjdr2_4063 binding-protein-dependent transport systems inner membrane component YP_003823156.1 KEGG: hor:Hore_20640 regulatory protein ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003823157.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ctc:CTC00572 hypothetical protein YP_003823158.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: clo:HMPREF0868_0592 cinnamoyl-CoA:phenyllactate CoA-transferase YP_003823159.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: cbl:CLK_2702 electron transfer flavoprotein, alpha subunit/FixB family protein YP_003823160.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: clo:HMPREF0868_0590 electron transfer flavoprotein domain protein YP_003823161.1 KEGG: clo:HMPREF0868_0589 butyryl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain protein YP_003823162.1 PFAM: AMP-dependent synthetase and ligase; KEGG: gbm:Gbem_1650 AMP-binding domain protein YP_003823163.1 KEGG: amt:Amet_0444 hypothetical protein YP_003823164.1 KEGG: clo:HMPREF0868_0582 hypothetical protein YP_003823165.1 PFAM: Citrate transporter; KEGG: bpf:BpOF4_16100 hypothetical protein YP_003823166.1 KEGG: clo:HMPREF0868_0587 R-phenyllactate dehydratase, small subunit; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component YP_003823167.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: clo:HMPREF0868_0586 R-phenyllactate dehydratase, medium subunit YP_003823168.1 TIGRFAM: CoA-substrate-specific enzyme activase; KEGG: clo:HMPREF0868_0585 (R)-2-hydroxyglutaryl-CoA dehydratase activator; PFAM: ATPase BadF/BadG/BcrA/BcrD type YP_003823169.1 KEGG: ttu:TERTU_0672 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH YP_003823170.1 KEGG: str:Sterm_3010 hypothetical protein YP_003823171.1 PFAM: glucose-6-phosphate isomerase; KEGG: pdi:BDI_3291 glucose-6-phosphate isomerase YP_003823172.1 PFAM: glucose-6-phosphate isomerase; KEGG: pdi:BDI_3293 glucose-6-phosphate isomerase-like protein YP_003823173.1 KEGG: lmh:LMHCC_0400 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003823174.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: str:Sterm_3252 PTS system mannose/fructose/sorbose family IID component YP_003823175.1 PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: str:Sterm_3253 phosphotransferase system PTS sorbose-specific IIC subunit YP_003823176.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: str:Sterm_3254 PTS system sorbose subfamily IIB component YP_003823177.1 PFAM: PTS system fructose subfamily IIA component; KEGG: str:Sterm_3255 PTS system fructose subfamily IIA component YP_003823178.1 KEGG: cbt:CLH_2694 phosphotransferase system, EIIC; PFAM: phosphotransferase system EIIC YP_003823179.1 KEGG: pfh:PFHG_03050 hypothetical protein YP_003823180.1 PFAM: Cna B domain protein; KEGG: dhd:Dhaf_4303 LPXTG-motif cell wall anchor domain protein YP_003823181.1 PFAM: extracellular solute-binding protein family 1; KEGG: cac:CAC1456 sugar-binding periplasmic protein YP_003823182.1 KEGG: cac:CAC1455 two-component system regulatory protein; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_003823183.1 KEGG: cac:CAC1454 membrane associated histidine kinase-like ATPase; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003823184.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cac:CAC1453 ribose ABC transporter periplasmic ribose-binding protein YP_003823185.1 PFAM: inner-membrane translocator; KEGG: cbk:CLL_A1530 ribose transport system permease protein RbsC YP_003823186.1 KEGG: dtu:Dtur_0411 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823187.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cac:CAC1453 ribose ABC transporter periplasmic ribose-binding protein YP_003823188.1 PFAM: protein of unknown function DUF1498; KEGG: mrb:Mrub_1279 hypothetical protein YP_003823189.1 TIGRFAM: ketose-bisphosphate aldolase; KEGG: str:Sterm_1650 tagatose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II YP_003823190.1 PFAM: PfkB domain protein; KEGG: rxy:Rxyl_2598 PfkB YP_003823191.1 KEGG: cth:Cthe_0039 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003823192.1 KEGG: ere:EUBREC_2809 ABC transporter ATP-binding protein uup; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823193.1 PFAM: protein of unknown function DUF1576; KEGG: aco:Amico_0325 protein of unknown function DUF1576 YP_003823194.1 KEGG: cation-transporting ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase YP_003823195.1 SMART: KH domain protein; TIGRFAM: polyribonucleotide nucleotidyltransferase; KEGG: cpy:Cphy_2763 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein YP_003823196.1 KEGG: eel:EUBELI_00899 small subunit ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15 YP_003823197.1 PFAM: amidohydrolase; KEGG: efa:EF1223 chlorohydrolase family protein YP_003823198.1 KEGG: efa:EF1222 adenine deaminase; PFAM: amidohydrolase YP_003823199.1 PFAM: extracellular solute-binding protein family 1; KEGG: cpf:CPF_1477 ABC transporter, substrate-binding protein YP_003823200.1 KEGG: cpf:CPF_1478 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_003823201.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF1219 spermidine/putrescine ABC transporter, permease protein YP_003823202.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_1480 ABC transporter, permease protein YP_003823203.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cac:CAC1046 LysR family transcriptional regulator YP_003823204.1 KEGG: cyh:Cyan8802_2066 methyltransferase type 12 YP_003823205.1 TIGRFAM: 2-dehydropantoate 2-reductase; KEGG: dhd:Dhaf_3165 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein YP_003823206.1 KEGG: ckr:CKR_1798 hypothetical protein YP_003823207.1 KEGG: ckr:CKR_1799 hypothetical protein; TIGRFAM: oligopeptide transporter, OPT family; oligopeptide transporters, OPT superfamily; PFAM: Oligopeptide transporter OPT superfamily protein YP_003823208.1 TIGRFAM: aminoacyl-histidine dipeptidase; KEGG: ckr:CKR_0614 hypothetical protein; PFAM: peptidase dimerisation domain protein; peptidase M20 YP_003823209.1 PFAM: asparagine synthase; KEGG: chy:CHY_1281 hypothetical protein YP_003823210.1 PFAM: protein of unknown function DUF111; KEGG: amt:Amet_0481 hypothetical protein YP_003823211.1 PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: amt:Amet_0480 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_003823212.1 KEGG: dhd:Dhaf_1275 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823213.1 KEGG: dhd:Dhaf_1863 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_003823214.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ele:Elen_2201 binding-protein-dependent transport systems inner membrane component YP_003823215.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ele:Elen_2202 binding-protein-dependent transport systems inner membrane component YP_003823216.1 PFAM: extracellular solute-binding protein family 5; KEGG: ele:Elen_2203 extracellular solute-binding protein family 5 YP_003823217.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bpf:BpOF4_07145 hypothetical protein YP_003823219.1 SMART: Exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: cce:Ccel_0452 DNA polymerase III, alpha subunit; PFAM: Exonuclease RNase T and DNA polymerase III; DNA topoisomerase type IA zn finger domain protein YP_003823220.1 KEGG: ele:Elen_2512 glycosyl transferase family 51; PFAM: glycosyl transferase family 51 YP_003823221.1 KEGG: tpd:Teth39_0267 transposase IS3/IS911 family protein; manually curated; PFAM: transposase IS3/IS911 family protein YP_003823222.1 PFAM: Aldose 1-epimerase; KEGG: cbe:Cbei_4605 aldose 1-epimerase YP_003823223.1 PFAM: LytTr DNA-binding region; KEGG: afn:Acfer_1554 response regulator receiver protein YP_003823224.1 KEGG: pyo:PY05378 hypothetical protein YP_003823225.1 KEGG: cdl:CDR20291_0463 methyl accpeting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003823226.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sak:SAK_0829 D-mannonate oxidoreductase YP_003823227.1 TIGRFAM: mannonate dehydratase; KEGG: cac:CAC1332 mannonate dehydratase; PFAM: Mannonate dehydratase YP_003823228.1 KEGG: cbe:Cbei_4661 helix-turn-helix domain-containing protein; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003823229.1 PFAM: branched-chain amino acid transport; KEGG: bsu:BSU26700 branched-chain amino acid transporter YP_003823230.1 PFAM: AzlC family protein; KEGG: dhd:Dhaf_3541 AzlC family protein YP_003823231.1 PFAM: Radical SAM domain protein; KEGG: tex:Teth514_1289 radical SAM domain-containing protein YP_003823232.1 KEGG: cpy:Cphy_0285 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003823233.1 SMART: AAA ATPase; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: aoe:Clos_2310 ATP-dependent metalloprotease FtsH; PFAM: ATPase AAA; peptidase M41 YP_003823234.1 KEGG: cbt:CLH_3336 flavodoxin family protein YP_003823235.1 KEGG: eel:EUBELI_00746 glutamate-1-semialdehyde 2,1-aminomutase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III YP_003823236.1 TIGRFAM: uroporphyrin-III C-methyltransferase; KEGG: pth:PTH_0973 uroporphyrinogen-III methylase and uroporphyrinogen-III synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4 YP_003823237.1 KEGG: pmx:PERMA_0444 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase YP_003823238.1 TIGRFAM: siroheme synthase; KEGG: afn:Acfer_0304 siroheme synthase YP_003823239.1 KEGG: adg:Adeg_1260 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; Shikimate/quinate 5-dehydrogenase YP_003823240.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: kol:Kole_0486 malate/L-lactate dehydrogenase YP_003823241.1 KEGG: ere:EUBREC_2589 glycerol kinase; TIGRFAM: glycerol kinase; PFAM: Carbohydrate kinase, FGGY-like YP_003823242.1 KEGG: apr:Apre_0294 MIP family channel protein; TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein YP_003823243.1 KEGG: amt:Amet_2966 response regulator receiver/unknown domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003823244.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aoe:Clos_1801 GCN5-related N-acetyltransferase YP_003823245.1 KEGG: cpy:Cphy_0849 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823246.1 KEGG: cpy:Cphy_0848 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003823247.1 KEGG: apr:Apre_0489 polar amino acid ABC transporter, inner membrane subunit; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor YP_003823248.1 KEGG: acl:ACL_1027 integral membrane protein YP_003823249.1 KEGG: ere:EUBREC_2379 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2 YP_003823250.1 PFAM: Cl- channel voltage-gated family protein; TrkA-C domain protein; KEGG: cdf:CD0606 chloride ion channel protein YP_003823251.1 KEGG: ere:EUBREC_1515 hypothetical protein YP_003823252.1 KEGG: ckr:CKR_3442 hypothetical protein YP_003823253.1 KEGG: ckr:CKR_3441 hypothetical protein YP_003823254.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: ckr:CKR_3440 hypothetical protein YP_003823255.1 PFAM: transposase IS200-family protein; KEGG: cce:Ccel_3266 transposase IS200-family protein YP_003823256.1 KEGG: ckr:CKR_3439 hypothetical protein YP_003823257.1 KEGG: ckl:CKL_3895 hypothetical protein YP_003823258.1 KEGG: ckr:CKR_3438 hypothetical protein YP_003823259.1 KEGG: ckr:CKR_3437 hypothetical protein YP_003823260.1 PFAM: SpoVG family protein; KEGG: ckr:CKR_3436 hypothetical protein YP_003823261.1 KEGG: lmy:LM5923_1845 hypothetical protein YP_003823262.1 PFAM: peptidase A24A prepilin type IV; KEGG: ckr:CKR_3435 hypothetical protein YP_003823263.1 KEGG: ckr:CKR_3434 hypothetical protein; TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein YP_003823264.1 SMART: AAA ATPase; KEGG: ckr:CKR_3433 hypothetical protein YP_003823265.1 PFAM: type II secretion system protein E; KEGG: ckr:CKR_3432 hypothetical protein YP_003823266.1 KEGG: ckl:CKL_3887 hypothetical protein YP_003823267.1 KEGG: ckr:CKR_3430 hypothetical protein YP_003823268.1 KEGG: ckr:CKR_3429 hypothetical protein YP_003823269.1 KEGG: ckl:CKL_3885 hypothetical protein YP_003823270.1 KEGG: ckl:CKL_3884 hypothetical protein YP_003823271.1 KEGG: ckr:CKR_3427 hypothetical protein YP_003823272.1 KEGG: ckr:CKR_3426 hypothetical protein YP_003823273.1 PFAM: Methyltransferase type 11; KEGG: sen:SACE_3648 hypothetical protein YP_003823274.1 KEGG: ckr:CKR_3425 hypothetical protein YP_003823275.1 KEGG: wbm:Wbm0490 integral membrane protein, interacts with FtsH YP_003823276.1 KEGG: ckl:CKL_3881 hypothetical protein YP_003823277.1 KEGG: ckl:CKL_3880 hypothetical protein YP_003823278.1 KEGG: ckl:CKL_3879 hypothetical protein YP_003823279.1 KEGG: ckr:CKR_3422 hypothetical protein YP_003823281.1 PFAM: protein of unknown function UPF0066; KEGG: ckr:CKR_0280 hypothetical protein YP_003823282.1 KEGG: ckr:CKR_3420 hypothetical protein YP_003823283.1 KEGG: ckr:CKR_3419 hypothetical protein YP_003823284.1 PFAM: AIG2 family protein; KEGG: ckl:CKL_3874 hypothetical protein YP_003823285.1 PFAM: Peptidase M23; KEGG: ckr:CKR_3418 hypothetical protein YP_003823286.1 KEGG: ckr:CKR_3417 hypothetical protein YP_003823287.1 KEGG: lmy:LM5923_1822 hypothetical protein YP_003823288.1 manually curated; KEGG: ckr:CKR_3415 hypothetical protein YP_003823289.1 KEGG: ckl:CKL_3869 hypothetical protein YP_003823290.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ckr:CKR_3414 hypothetical protein YP_003823291.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ckr:CKR_3413 hypothetical protein YP_003823292.1 KEGG: ckr:CKR_3412 hypothetical protein YP_003823293.1 KEGG: ckr:CKR_3411 hypothetical protein; PFAM: regulatory protein MerR; SMART: regulatory protein MerR YP_003823294.1 KEGG: ckr:CKR_3410 hypothetical protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein YP_003823295.1 KEGG: ckr:CKR_3409 hypothetical protein YP_003823296.1 PFAM: protein of unknown function DUF1697; KEGG: ckr:CKR_3408 hypothetical protein YP_003823297.1 PFAM: TRAG family protein; KEGG: ckr:CKR_3407 hypothetical protein YP_003823298.1 KEGG: ckl:CKL_3860 hypothetical protein YP_003823299.1 KEGG: ckr:CKR_3406 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003823300.1 PFAM: Methyltransferase type 11; KEGG: ckr:CKR_3405 hypothetical protein YP_003823301.1 PFAM: N-formylglutamate amidohydrolase; KEGG: ckr:CKR_3404 hypothetical protein YP_003823302.1 KEGG: ckr:CKR_3403 hypothetical protein YP_003823303.1 KEGG: ckl:CKL_3855 transposase YP_003823304.1 KEGG: ckr:CKR_3402 hypothetical protein; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003823305.1 KEGG: ckr:CKR_3401 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003823306.1 KEGG: ckr:CKR_3400 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823307.1 KEGG: ckr:CKR_3399 hypothetical protein YP_003823308.1 KEGG: ckr:CKR_3398 hypothetical protein YP_003823309.1 KEGG: ckr:CKR_3397 hypothetical protein YP_003823310.1 KEGG: ckl:CKL_3848 hypothetical protein YP_003823311.1 KEGG: ckr:CKR_3396 hypothetical protein YP_003823312.1 KEGG: ckr:CKR_3395 hypothetical protein; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003823313.1 KEGG: ckr:CKR_3394 hypothetical protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein YP_003823314.1 KEGG: swo:Swol_2211 transposase YP_003823315.1 PFAM: IS66 Orf2 family protein; KEGG: cce:Ccel_2969 IS66 Orf2 family protein YP_003823316.1 KEGG: cth:Cthe_0517 hypothetical protein YP_003823317.1 PFAM: transposase IS200-family protein; KEGG: cce:Ccel_3266 transposase IS200-family protein YP_003823318.1 KEGG: amt:Amet_1490 hypothetical protein YP_003823319.1 PFAM: VanZ family protein; KEGG: cdf:CD2160 hypothetical protein YP_003823320.1 KEGG: dhd:Dhaf_1666 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003823321.1 KEGG: dae:Dtox_0488 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003823322.1 KEGG: cbl:CLK_0105 transposase and inactivated derivatives YP_003823323.1 PFAM: sigma-70 region 4 domain protein; KEGG: ckr:CKR_3394 hypothetical protein YP_003823324.1 PFAM: PemK family protein; KEGG: ckr:CKR_3393 hypothetical protein YP_003823325.1 PFAM: Resolvase domain; KEGG: ckl:CKL_3843 recombinase-related protein YP_003823327.1 PFAM: Resolvase domain; Recombinase; KEGG: ckr:CKR_3392 hypothetical protein YP_003823328.1 PFAM: Recombinase; KEGG: ckr:CKR_3391 hypothetical protein YP_003823329.1 PFAM: Resolvase domain; Recombinase; KEGG: ckl:CKL_3840 hypothetical protein YP_003823330.1 KEGG: ckr:CKR_3389 hypothetical protein YP_003823331.1 PFAM: FRG domain protein; KEGG: ckr:CKR_3388 hypothetical protein YP_003823332.1 KEGG: ckr:CKR_3386 hypothetical protein YP_003823333.1 KEGG: ckr:CKR_3385 hypothetical protein; PFAM: ATPase AAA; SMART: AAA ATPase YP_003823334.1 KEGG: cdf:CD0508 conjugative transposon tetracycline resistance protein; TIGRFAM: small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain IV; elongation factor G domain protein YP_003823335.1 KEGG: eel:EUBELI_20111 riboflavin synthase beta chain; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase YP_003823336.1 KEGG: eel:EUBELI_20112 GTP cyclohydrolase II / 3,4-dihydroxy 2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II YP_003823337.1 TIGRFAM: riboflavin synthase, alpha subunit; KEGG: eel:EUBELI_20113 riboflavin synthase alpha chain; PFAM: Lumazine-binding protein YP_003823338.1 KEGG: ere:EUBREC_3132 riboflavin biosynthesis protein; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding YP_003823339.1 PFAM: major facilitator superfamily MFS_1; KEGG: str:Sterm_0208 major facilitator superfamily MFS_1 YP_003823340.1 KEGG: cdl:CDR20291_3183 hypothetical protein YP_003823341.1 KEGG: rop:ROP_36960 ABC transporter permease YP_003823342.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_0119 substrate-binding region of ABC-type glycine betaine transport system YP_003823343.1 TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; KEGG: cpy:Cphy_0118 glycine betaine/L-proline ABC transporter, ATPase subunit; SMART: AAA ATPase; CBS domain containing protein YP_003823344.1 KEGG: cpy:Cphy_0117 TrkA domain-containing protein; PFAM: regulatory protein GntR HTH; TrkA-C domain protein; SMART: regulatory protein GntR HTH YP_003823345.1 KEGG: ctc:CTC00602 hypothetical protein YP_003823346.1 KEGG: amt:Amet_0533 hypothetical protein YP_003823347.1 PFAM: protein of unknown function DUF74; KEGG: cbi:CLJ_B2005 hypothetical protein YP_003823348.1 KEGG: ele:Elen_1286 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003823349.1 manually curated; KEGG: dhd:Dhaf_1088 hypothetical protein YP_003823350.1 KEGG: mmu:100045941 similar to gamma-aminobutyric acid A receptor, epsilon; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM YP_003823351.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; metal-dependent phosphohydrolase HD sub domain; KEGG: tai:Taci_0162 diguanylate cyclase and metal dependent phosphohydrolase; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; metal-dependent phosphohydrolase HD region YP_003823352.1 PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: bwe:BcerKBAB4_1637 FAD linked oxidase domain-containing protein YP_003823353.1 KEGG: cpy:Cphy_2661 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003823354.1 KEGG: cpy:Cphy_2662 glutathione peroxidase; PFAM: glutathione peroxidase YP_003823355.1 KEGG: cpy:Cphy_3470 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SirA family protein; SMART: Rhodanese domain protein YP_003823356.1 KEGG: cpy:Cphy_3531 hypothetical protein YP_003823357.1 KEGG: pjd:Pjdr2_5478 galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase YP_003823358.1 TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; KEGG: cpy:Cphy_0408 radical SAM protein; SMART: Elongator protein 3/MiaB/NifB YP_003823359.1 PFAM: Capsule synthesis protein, CapA; KEGG: pjd:Pjdr2_2108 protein of poly-gamma-glutamate biosynthesis (capsule formation)-like protein YP_003823360.1 PFAM: glycoside hydrolase family 38; KEGG: gym:GYMC10_2685 glycoside hydrolase family 38 YP_003823361.1 KEGG: gym:GYMC10_3545 phosphoesterase PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein YP_003823362.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gym:GYMC10_3546 binding-protein-dependent transport systems inner membrane component YP_003823363.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gym:GYMC10_3547 binding-protein-dependent transport systems inner membrane component YP_003823364.1 PFAM: extracellular solute-binding protein family 1; KEGG: pjd:Pjdr2_2847 extracellular solute-binding protein family 1 YP_003823365.1 KEGG: gym:GYMC10_0368 transcriptional regulator, GntR family with LacI sensor; PFAM: regulatory protein GntR HTH; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein GntR HTH YP_003823366.1 KEGG: ere:EUBREC_2385 DAK2 domain/DegV family protein; TIGRFAM: degV family protein; PFAM: DegV family protein YP_003823367.1 KEGG: bpe:BP1485 hypothetical protein YP_003823368.1 PFAM: Heat shock protein Hsp90-like; ATP-binding region ATPase domain protein; KEGG: eel:EUBELI_01321 molecular chaperone HtpG YP_003823369.1 KEGG: cpy:Cphy_3370 hypothetical protein YP_003823370.1 KEGG: afn:Acfer_1038 aspartyl aminopeptidase; PFAM: peptidase M18 aminopeptidase I YP_003823371.1 KEGG: hypothetical protein YP_003823372.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: eel:EUBELI_01220 hypothetical protein YP_003823373.1 KEGG: cdf:CD2764 hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_003823374.1 KEGG: ere:EUBREC_3290 Maf-like protein; TIGRFAM: maf protein; PFAM: Maf family protein YP_003823375.1 PFAM: protein of unknown function DUF1113; KEGG: eel:EUBELI_01274 hypothetical protein YP_003823376.1 PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: amt:Amet_2506 acid phosphatase/vanadium-dependent haloperoxidase related YP_003823377.1 KEGG: ckr:CKR_3066 hypothetical protein YP_003823378.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; KEGG: eel:EUBELI_01075 starch synthase; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1 YP_003823379.1 KEGG: cpy:Cphy_2497 sporulation transcriptional activator Spo0A; PFAM: Sporulation initiation factor Spo0A ; response regulator receiver; SMART: response regulator receiver YP_003823380.1 TIGRFAM: stage IV sporulation protein B; KEGG: cpy:Cphy_2498 stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB YP_003823381.1 PFAM: protein of unknown function DUF437; KEGG: sga:GALLO_1724 hypothetical protein YP_003823382.1 KEGG: cth:Cthe_1498 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003823383.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: str:Sterm_4199 integrase family protein YP_003823384.1 KEGG: ere:EUBREC_2205 DNA repair ATPase; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein YP_003823385.1 KEGG: cpy:Cphy_2508 arginine repressor, ArgR; TIGRFAM: arginine repressor; PFAM: Arginine repressor-like YP_003823386.1 PFAM: ATP-NAD/AcoX kinase; KEGG: eel:EUBELI_01082 NAD+ kinase YP_003823387.1 TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: eel:EUBELI_01083 hemolysin; SMART: RNA-binding S4 domain protein YP_003823388.1 KEGG: eel:EUBELI_01084 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein YP_003823389.1 PFAM: Polyprenyl synthetase; KEGG: ere:EUBREC_2210 geranyltranstransferase YP_003823390.1 PFAM: Exonuclease VII small subunit; KEGG: eel:EUBELI_01086 hypothetical protein YP_003823391.1 KEGG: ere:EUBREC_2212 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type YP_003823392.1 KEGG: ere:EUBREC_2213 NusB antitermination factor; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44 YP_003823393.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: cpy:Cphy_2125 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YP_003823394.1 PFAM: aspartate dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: cpy:Cphy_2124 aspartate dehydrogenase YP_003823395.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cdl:CDR20291_2551 signaling protein; SMART: GGDEF domain containing protein YP_003823396.1 PFAM: protein of unknown function DUF322; KEGG: cpy:Cphy_2516 hypothetical protein YP_003823397.1 KEGG: cpy:Cphy_2517 hypothetical protein YP_003823398.1 KEGG: cpy:Cphy_2518 hypothetical protein YP_003823399.1 PFAM: Sporulation stage III protein AF; KEGG: cpy:Cphy_2519 hypothetical protein YP_003823400.1 PFAM: Sporulation stage III protein AE; KEGG: cpy:Cphy_2520 sporulation stage III, protein AE YP_003823401.1 KEGG: cpy:Cphy_2521 stage III sporulation protein AD YP_003823402.1 TIGRFAM: stage III sporulation protein AC; KEGG: ere:EUBREC_2235 hypothetical protein YP_003823403.1 PFAM: Sporulation stage III protein AB; KEGG: cpy:Cphy_2523 hypothetical protein YP_003823404.1 KEGG: cpy:Cphy_2524 stage III sporulation protein AA; TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase YP_003823405.1 PFAM: NLP/P60 protein; KEGG: ere:EUBREC_0710 NLP/P60 family protein YP_003823406.1 KEGG: cpy:Cphy_2130 hypothetical protein YP_003823407.1 KEGG: gwc:GWCH70_0448 alkyl hydroperoxide reductase, F subunit; TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003823408.1 TIGRFAM: peroxiredoxin; KEGG: ckr:CKR_0314 hypothetical protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_003823409.1 PFAM: protein of unknown function DUF1062; KEGG: cac:CAC0055 hypothetical protein YP_003823410.1 KEGG: cbe:Cbei_0358 hypothetical protein YP_003823411.1 KEGG: pdi:BDI_2043 hypothetical protein YP_003823412.1 PFAM: protein of unknown function DUF163; KEGG: eel:EUBELI_01221 hypothetical protein YP_003823413.1 KEGG: ere:EUBREC_2418 acetyl-hydrolase YP_003823414.1 KEGG: amt:Amet_1520 hypothetical protein YP_003823415.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ckr:CKR_1918 hypothetical protein YP_003823416.1 KEGG: cpy:Cphy_1954 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003823417.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: Soluble ligand binding domain; helix-hairpin-helix motif; KEGG: cpy:Cphy_1953 helix-hairpin-helix repeat-containing competence protein ComEA; SMART: Helix-hairpin-helix DNA-binding class 1 YP_003823418.1 PFAM: protein of unknown function DUF606; KEGG: cpy:Cphy_1952 hypothetical protein YP_003823419.1 KEGG: cpy:Cphy_0729 proton-coupled thiamine transporter YuaJ; TIGRFAM: proton-coupled thiamine transporter YuaJ; PFAM: thiamine transporter YuaJ YP_003823420.1 KEGG: eel:EUBELI_00435 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_003823421.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: cdf:CD0719 methenyltetrahydrofolate cyclohydrolase YP_003823422.1 KEGG: tsi:TSIB_1149 hypothetical protein YP_003823423.1 KEGG: mmw:Mmwyl1_1534 ribokinase-like domain-containing protein; PFAM: PfkB domain protein YP_003823424.1 KEGG: tpd:Teth39_2043 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003823425.1 TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; KEGG: lsp:Bsph_1810 succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003823426.1 KEGG: cdl:CDR20291_0307 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1355 YP_003823427.1 KEGG: cdf:CD0303 acetylornithine deacetylase; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003823428.1 KEGG: bde:BDP_1920 inosine-uridine preferring nucleoside hydrolase; PFAM: Inosine/uridine-preferring nucleoside hydrolase YP_003823429.1 PFAM: inner-membrane translocator; KEGG: str:Sterm_3627 inner-membrane translocator YP_003823430.1 PFAM: inner-membrane translocator; KEGG: str:Sterm_3628 inner-membrane translocator YP_003823431.1 KEGG: str:Sterm_3629 ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823432.1 PFAM: basic membrane lipoprotein; KEGG: str:Sterm_3630 basic membrane lipoprotein YP_003823433.1 KEGG: efa:EF1922 transcriptional regulator, LacI family/carbohydrate kinase, PfkB family protein; PFAM: PfkB domain protein; regulatory protein LacI; SMART: regulatory protein LacI YP_003823434.1 KEGG: cbt:CLH_1610 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003823435.1 KEGG: ere:EUBREC_1611 acetylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III YP_003823436.1 TIGRFAM: acetylglutamate kinase; KEGG: ere:EUBREC_1610 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003823437.1 TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; KEGG: eel:EUBELI_00594 amino-acid N-acetyltransferase; PFAM: arginine biosynthesis protein ArgJ YP_003823438.1 KEGG: afn:Acfer_1106 hypothetical protein YP_003823439.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ere:EUBREC_1609 hypothetical protein YP_003823440.1 TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: cpy:Cphy_1948 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_003823441.1 TIGRFAM: argininosuccinate synthase; KEGG: ere:EUBREC_1607 argininosuccinate synthase; PFAM: argininosuccinate synthase YP_003823442.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aoe:Clos_1809 GCN5-related N-acetyltransferase YP_003823443.1 PFAM: Patatin; KEGG: swo:Swol_0062 hypothetical protein YP_003823444.1 KEGG: lba:Lebu_2046 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SH3 type 3 domain protein; SMART: cell wall hydrolase/autolysin; SH3 domain protein YP_003823445.1 TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: cpy:Cphy_2905 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_003823446.1 KEGG: cpy:Cphy_2906 FeS cluster assembly scaffold protein NifU; TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein YP_003823447.1 KEGG: cpy:Cphy_2907 cysteine desulfurase NifS; TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V YP_003823448.1 PFAM: polysaccharide biosynthesis protein; KEGG: cpy:Cphy_2908 polysaccharide biosynthesis protein YP_003823449.1 PFAM: TOBE domain protein; KEGG: pmu:PM0216 MopI YP_003823450.1 KEGG: mru:mru_0348 molybdate ABC transporter ATP-binding protein ModC; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823451.1 KEGG: ere:EUBREC_3162 molybdate transport system permease/ATP-binding protein; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003823452.1 KEGG: cpy:Cphy_1482 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1 YP_003823453.1 TIGRFAM: excisionase; KEGG: ckr:CKR_2727 hypothetical protein YP_003823454.1 PFAM: protein of unknown function DUF1538; KEGG: str:Sterm_0908 protein of unknown function DUF1538 YP_003823455.1 KEGG: str:Sterm_0909 hypothetical protein YP_003823456.1 KEGG: bha:BH0916 chitinase; PFAM: glycoside hydrolase family 18; SMART: chitinase II YP_003823457.1 PFAM: nitroreductase; KEGG: dhd:Dhaf_2018 nitroreductase YP_003823458.1 KEGG: pfd:PFDG_00927 hypothetical protein YP_003823459.1 PFAM: thioesterase superfamily protein; KEGG: cce:Ccel_1870 thioesterase superfamily protein YP_003823460.1 KEGG: pyo:PY00062 hypothetical protein YP_003823461.1 PFAM: GCN5-related N-acetyltransferase; KEGG: fma:FMG_1298 acetyltransferase YP_003823462.1 PFAM: pentapeptide repeat protein; KEGG: ctc:CTC00631 hypothetical protein YP_003823463.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spp:SPP_0956 acetyltransferase, GNAT family YP_003823464.1 PFAM: transposase IS3/IS911 family protein; KEGG: cce:Ccel_2372 transposase IS3/IS911 family protein YP_003823465.1 PFAM: Integrase catalytic region; KEGG: ckr:CKR_3047 hypothetical protein YP_003823466.1 TIGRFAM: homoserine O-succinyltransferase; KEGG: eel:EUBELI_01200 homoserine O-succinyltransferase; PFAM: homoserine O-succinyltransferase YP_003823467.1 TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; zinc-finger NAD-dependent DNA ligase C4-type; helix-hairpin-helix motif; BRCT domain protein; KEGG: cpy:Cphy_2927 DNA ligase, NAD-dependent; SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein YP_003823468.1 KEGG: ere:EUBREC_2219 pseudouridylate synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003823469.1 KEGG: tit:Thit_0220 hemerythrin-like metal-binding protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein YP_003823470.1 KEGG: eel:EUBELI_00556 hypothetical protein YP_003823471.1 PFAM: Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: cbk:CLL_A1781 ferrous iron transport protein B YP_003823472.1 PFAM: Recombinase; Resolvase domain; KEGG: cdl:CDR20291_2959 conjugative transposon site-specific recombinase YP_003823473.1 KEGG: dhd:Dhaf_2102 transcriptional regulator, AraC family; PFAM: Ada metal-binding domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003823474.1 KEGG: dae:Dtox_2525 HhH-GPD family protein; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein YP_003823475.1 KEGG: cce:Ccel_1140 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding YP_003823476.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: shi:Shel_11500 conserved repeat protein YP_003823477.1 KEGG: rcu:RCOM_1957500 hypothetical protein YP_003823478.1 KEGG: cbe:Cbei_4095 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_003823479.1 KEGG: cbe:Cbei_4096 GntR domain-containing protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003823480.1 PFAM: transposase IS3/IS911 family protein; KEGG: cce:Ccel_2372 transposase IS3/IS911 family protein YP_003823481.1 PFAM: Integrase catalytic region; KEGG: ckr:CKR_3047 hypothetical protein YP_003823482.1 PFAM: cytochrome c biogenesis protein transmembrane region; Redoxin domain protein; KEGG: ele:Elen_0625 cytochrome c biogenesis protein transmembrane region YP_003823483.1 PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; KEGG: cth:Cthe_1404 GTP-binding protein, HSR1-related YP_003823484.1 PFAM: FeoA family protein; KEGG: cbt:CLH_1793 hypothetical protein YP_003823485.1 PFAM: Heparinase II/III family protein; KEGG: yen:YE0458 hypothetical protein YP_003823486.1 KEGG: cpy:Cphy_0496 two component AraC family transcriptional regulator; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003823487.1 KEGG: cpy:Cphy_0495 histidine kinase internal region; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein YP_003823488.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pjd:Pjdr2_2006 binding-protein-dependent transport systems inner membrane component YP_003823489.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pjd:Pjdr2_2005 binding-protein-dependent transport systems inner membrane component YP_003823490.1 PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_0494 extracellular solute-binding protein YP_003823491.1 PFAM: Penicillinase repressor; KEGG: cdl:CDR20291_0413 penicillinase repressor YP_003823492.1 KEGG: cdf:CD0470 beta-lactamase-inducing penicillin-binding protein; PFAM: penicillin-binding protein transpeptidase; peptidase M56 BlaR1 YP_003823493.1 KEGG: mba:Mbar_A3399 hypothetical protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein YP_003823494.1 KEGG: ame:727279 similar to SON protein (SON3) (Negative regulatory element-binding protein) (NRE-binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1) YP_003823495.1 PFAM: integrase family protein; KEGG: lrf:LAR_0817 integrase YP_003823496.1 KEGG: ppp:PHYPADRAFT_165666 hypothetical protein YP_003823497.1 KEGG: cbe:Cbei_1900 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; NTF2 domain protein transpeptidase YP_003823498.1 KEGG: swo:Swol_1535 iron-dependent transcriptional repressor; PFAM: iron dependent repressor; SMART: iron dependent repressor YP_003823499.1 KEGG: ele:Elen_1459 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase YP_003823500.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbe:Cbei_3824 GCN5-related N-acetyltransferase YP_003823501.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aoe:Clos_0830 LysR family transcriptional regulator YP_003823502.1 KEGG: cpy:Cphy_1088 GntR family transcriptional regulator YP_003823503.1 KEGG: ere:EUBREC_1170 aspartyl/glutamyl-tRNA amidotransferase subunit B; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; Asn/Gln amidotransferase YP_003823504.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; KEGG: ere:EUBREC_1169 glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase YP_003823505.1 KEGG: ere:EUBREC_1168 glutamyl-tRNA(Gln) amidotransferase, C subunit; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit YP_003823506.1 KEGG: ere:EUBREC_1167 aspartyl-tRNA synthetase, non-discriminating; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type YP_003823507.1 KEGG: cpy:Cphy_2060 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003823508.1 PFAM: protein of unknown function DUF901; KEGG: cpy:Cphy_1823 small GTP-binding protein YP_003823509.1 PFAM: protein of unknown function DUF204; KEGG: aoe:Clos_0882 hypothetical protein YP_003823510.1 TIGRFAM: alpha,alpha-phosphotrehalase; PFAM: alpha amylase catalytic region; KEGG: cby:CLM_2205 alpha,alpha-phosphotrehalase; SMART: alpha amylase catalytic sub domain YP_003823511.1 TIGRFAM: PTS system, trehalose-specific IIBC subunit; PTS system, glucose-like IIB subunint; KEGG: cbe:Cbei_2320 PTS system, trehalose-specific IIBC subunit; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003823512.1 TIGRFAM: trehalose operon repressor; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; KEGG: cby:CLM_2206 trehalose operon repressor; SMART: regulatory protein GntR HTH YP_003823513.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ele:Elen_0387 metal dependent phosphohydrolase YP_003823514.1 TIGRFAM: tyrosyl-tRNA synthetase; KEGG: ere:EUBREC_0190 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein YP_003823515.1 KEGG: smf:Smon_0959 SNO glutamine amidotransferase; TIGRFAM: SNO glutamine amidotransferase; PFAM: SNO glutamine amidotransferase YP_003823516.1 KEGG: ere:EUBREC_2951 pyridoxine biosynthesis protein; TIGRFAM: pyridoxine biosynthesis protein; PFAM: Vitamin B6 biosynthesis protein YP_003823517.1 PFAM: glycoside hydrolase family 4; KEGG: cbb:CLD_0461 maltose-6'-phosphate glucosidase YP_003823518.1 KEGG: lcb:LCABL_28740 PTS system, alpha-glucoside-specific IIbc component; TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003823519.1 PFAM: helix-turn-helix protein RpiR; KEGG: cbi:CLJ_B0341 transcriptional regulator, RpiR family YP_003823520.1 KEGG: lpp:lpp1047 hypothetical protein YP_003823521.1 KEGG: eel:EUBELI_01114 3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase I/KDSA YP_003823522.1 KEGG: aoe:Clos_0946 undecaprenol kinase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA YP_003823523.1 KEGG: ere:EUBREC_1469 uracil-DNA glycosylase; TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily YP_003823524.1 KEGG: ere:EUBREC_1468 imidazoleglycerol phosphate synthase, cyclase subunit; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein YP_003823525.1 KEGG: eel:EUBELI_00885 amidotransferase HisH; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I YP_003823526.1 KEGG: spl:Spea_2201 hypothetical protein YP_003823527.1 KEGG: oaa:100074132 similar to transcobalamin I YP_003823528.1 KEGG: cbt:CLH_2842 hypothetical protein YP_003823529.1 KEGG: cpy:Cphy_1343 RNA methylase; PFAM: RNA methylase; SMART: PUA domain containing protein YP_003823530.1 KEGG: ele:Elen_1288 aldo/keto reductase YP_003823531.1 KEGG: dhd:Dhaf_2549 ABC transporter permease YP_003823532.1 KEGG: cbk:CLL_A0681 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823533.1 KEGG: cbt:CLH_0644 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003823534.1 PFAM: polysaccharide deacetylase; KEGG: cce:Ccel_2251 polysaccharide deacetylase YP_003823535.1 KEGG: cpy:Cphy_3796 phosphotransferase domain-containing protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein YP_003823536.1 KEGG: cpy:Cphy_3797 hypothetical protein YP_003823537.1 PFAM: Fe-S cluster domain protein; hydrogenase large subunit domain protein; KEGG: cpy:Cphy_3798 Fe-S cluster domain-containing protein YP_003823538.1 PFAM: ATP-binding region ATPase domain protein; KEGG: cpy:Cphy_3799 anti-sigma regulatory factor, serine/threonine protein kinase YP_003823539.1 PFAM: DRTGG domain protein; KEGG: cpy:Cphy_3800 DRTGG domain-containing protein YP_003823540.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: cpy:Cphy_3801 NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_003823541.1 PFAM: ATP-binding region ATPase domain protein; KEGG: cpy:Cphy_3802 histidine kinase YP_003823542.1 KEGG: cpy:Cphy_3803 hypothetical protein YP_003823543.1 KEGG: cpy:Cphy_3804 NADH dehydrogenase (quinone); PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_003823544.1 KEGG: cpy:Cphy_3805 hydrogenase, Fe-only; TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; iron hydrogenase small subunit YP_003823545.1 KEGG: cbh:CLC_0687 hypothetical protein YP_003823546.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; PFAM: chemotaxis sensory transducer; KEGG: cno:NT01CX_0607 methyl-accepting chemotaxis protein; SMART: chemotaxis sensory transducer YP_003823547.1 KEGG: bbe:BBR47_49080 hypothetical protein YP_003823548.1 PFAM: Coat F domain protein; KEGG: amt:Amet_0905 coat F domain-containing protein YP_003823549.1 KEGG: eel:EUBELI_01405 ferredoxin hydrogenase; PFAM: hydrogenase large subunit domain protein YP_003823550.1 KEGG: cpy:Cphy_0091 protein serine/threonine phosphatase; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein YP_003823551.1 TIGRFAM: PAS sensor protein; PFAM: hydrogenase large subunit domain protein; Fe-S cluster domain protein; PAS fold domain protein; KEGG: cpy:Cphy_0092 PAS/PAC sensor protein; SMART: PAS domain containing protein YP_003823552.1 KEGG: cpy:Cphy_0093 hypothetical protein YP_003823553.1 TIGRFAM: adenine deaminase; KEGG: chy:CHY_0699 adenine deaminase; PFAM: amidohydrolase YP_003823554.1 KEGG: ere:EUBREC_0297 purine nucleoside phosphorylase; TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine or other phosphorylase family 1 YP_003823555.1 KEGG: dhd:Dhaf_2612 hypothetical protein YP_003823556.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ccu:Ccur_03220 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component YP_003823557.1 KEGG: ccu:Ccur_03230 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823558.1 KEGG: ccu:Ccur_03190 hypothetical protein YP_003823559.1 KEGG: cbf:CLI_1611 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein YP_003823560.1 KEGG: cdf:CD1883 AraC family transcription regulator; PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003823561.1 KEGG: eel:EUBELI_20548 ATP-binding cassette subfamily B protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003823562.1 KEGG: eel:EUBELI_20549 ATP-binding cassette subfamily B protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003823564.1 PFAM: protein of unknown function DUF342; KEGG: cce:Ccel_2021 protein of unknown function DUF342 YP_003823565.1 KEGG: amt:Amet_0248 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_003823566.1 PFAM: Lytic transglycosylase catalytic; KEGG: transglycosylase YP_003823567.1 PFAM: cell wall binding repeat-containing protein; KEGG: cbk:CLL_A3224 cell wall binding repeat domain protein YP_003823568.1 PFAM: cell wall binding repeat-containing protein; KEGG: cpe:CPE0570 hypothetical protein YP_003823569.1 PFAM: type IV pilus assembly PilZ; KEGG: taf:THA_1751 type IV pilus assembly protein PilZ YP_003823570.1 PFAM: type III secretion exporter; KEGG: gym:GYMC10_4210 flagellar biosynthetic protein FlhB YP_003823571.1 KEGG: tet:TTHERM_00101320 Viral A-type inclusion protein repeat containing protein YP_003823572.1 KEGG: cdf:CD0539 chemotaxis protein; PFAM: ATP-binding region ATPase domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein YP_003823573.1 KEGG: dae:Dtox_0612 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_003823574.1 PFAM: MCP methyltransferase CheR-type; KEGG: cth:Cthe_0808 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type YP_003823575.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: dae:Dtox_0615 response regulator receiver modulated CheB methylesterase; SMART: response regulator receiver YP_003823576.1 PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: bpu:BPUM_3192 transcriptional repressor FlgM YP_003823577.1 PFAM: FlgN family protein; KEGG: cpy:Cphy_0304 hypothetical protein YP_003823578.1 KEGG: ate:Athe_1675 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_003823579.1 KEGG: cno:NT01CX_1873 flagellar hook-associated protein 3 YP_003823580.1 KEGG: bay:RBAM_032540 YviE YP_003823581.1 PFAM: protein of unknown function DUF180; KEGG: cce:Ccel_0098 protein of unknown function DUF180 YP_003823582.1 PFAM: carbon storage regulator; KEGG: drm:Dred_2417 carbon storage regulator, CsrA YP_003823583.1 KEGG: dae:Dtox_3746 hypothetical protein YP_003823584.1 KEGG: cpy:Cphy_3539 hypothetical protein YP_003823585.1 KEGG: ang:An07g07790 hypothetical protein YP_003823586.1 KEGG: tte:TTE0506 flagellar protein; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS YP_003823587.1 PFAM: flagellar hook-associated 2 domain protein; flagellar hook-associated protein 2 domain protein; KEGG: cth:Cthe_2218 flagellar hook-associated 2-like protein YP_003823588.1 KEGG: efa:EF_B0064 ParA family protein YP_003823589.1 PFAM: Late competence development protein ComFB; KEGG: ehi:EHI_113950 hypothetical protein YP_003823590.1 PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: dhd:Dhaf_3594 diguanylate phosphodiesterase YP_003823591.1 KEGG: cpy:Cphy_2843 response regulator receiver modulated CheW protein; PFAM: response regulator receiver; CheW domain protein; SMART: CheW domain protein; response regulator receiver YP_003823592.1 PFAM: CheD family protein; KEGG: swo:Swol_0877 CheD, stimulates methylation of MCP proteins YP_003823593.1 PFAM: chemotaxis protein CheC; KEGG: cdf:CD0534 chemotaxis protein CheC YP_003823594.1 KEGG: cce:Ccel_3100 protein of unknown function DUF1078 domain protein; TIGRFAM: fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_003823595.1 KEGG: tpd:Teth39_2093 flagellar basal body rod protein; TIGRFAM: fagellar hook-basal body protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein YP_003823596.1 KEGG: csc:Csac_1285 RNA polymerase, sigma 28 subunit, FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein YP_003823597.1 KEGG: amt:Amet_2703 flagellar biosynthesis protein FlhA; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein YP_003823598.1 KEGG: cth:Cthe_0484 flagellar biosynthetic protein FlhB; TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter YP_003823599.1 KEGG: ate:Athe_2155 flagellar biosynthetic protein FliR; TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein YP_003823600.1 PFAM: export protein FliQ family 3; KEGG: cdl:CDR20291_0265 flagellar export protein YP_003823601.1 KEGG: dae:Dtox_0700 flagellar biosynthetic protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein YP_003823602.1 KEGG: cno:NT01CX_1915 flagellar biosynthesis protein FliZ YP_003823603.1 KEGG: eel:EUBELI_00823 flagellar motor switch protein FliN/FliY; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; chemotaxis protein CheC YP_003823604.1 KEGG: afl:Aflv_1743 flagellar basal body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein YP_003823605.1 KEGG: ere:EUBREC_1451 two-component response regulator involved in modulation of flagellar; PFAM: response regulator receiver; SMART: response regulator receiver YP_003823606.1 PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: csc:Csac_1269 flagellar motor switch protein FliM YP_003823607.1 PFAM: OmpA/MotB domain protein; KEGG: cdl:CDR20291_0673 chemotaxis protein YP_003823608.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: amt:Amet_2714 MotA/TolQ/ExbB proton channel YP_003823609.1 PFAM: flagellar FlbD family protein; KEGG: ckr:CKR_1059 hypothetical protein YP_003823610.1 KEGG: hor:Hore_16800 flagellar hook protein FlgE, epsilon proteobacterial; TIGRFAM: fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_003823611.1 TIGRFAM: flagellar operon protein; KEGG: swo:Swol_0857 hypothetical protein YP_003823612.1 PFAM: flagellar hook capping protein; KEGG: dsy:DSY2965 hypothetical protein YP_003823613.1 KEGG: gme:Gmet_3106 flagellar hook-length control protein YP_003823614.1 KEGG: nth:Nther_1395 flagellar export protein FliJ; TIGRFAM: flagellar export protein FliJ; PFAM: flagellar export FliJ family protein YP_003823615.1 TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; KEGG: cpy:Cphy_2714 flagellar protein export ATPase FliI; SMART: AAA ATPase YP_003823616.1 KEGG: tpd:Teth39_1255 flagellar biosynthesis/type III secretory pathway protein-like protein YP_003823617.1 KEGG: ate:Athe_2172 flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG YP_003823618.1 KEGG: kra:Krad_1650 flagellar M-ring protein FliF; TIGRFAM: flagellar M-ring protein FliF; PFAM: Flagellar M-ring domain protein; secretory protein YscJ/FliF family protein YP_003823619.1 PFAM: flagellar hook-basal body complex protein FliE; KEGG: dhd:Dhaf_4151 flagellar hook-basal body complex subunit FliE YP_003823620.1 KEGG: afl:Aflv_1744 flagellar basal body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein YP_003823621.1 KEGG: cbk:CLL_A0826 O-methyltransferase YP_003823622.1 TIGRFAM: methyltransferase FkbM family; KEGG: cbb:CLD_3206 FkbM family methyltransferase YP_003823623.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: pph:Ppha_0524 NAD-dependent epimerase/dehydratase YP_003823624.1 KEGG: cli:Clim_1892 phosphoheptose isomerase YP_003823625.1 PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: cag:Cagg_0788 GHMP kinase YP_003823626.1 PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: cth:Cthe_2560 dTDP-4-dehydrorhamnose 3,5-epimerase YP_003823627.1 PFAM: Radical SAM domain protein; KEGG: cbh:CLC_2591 radical SAM domain-containing protein YP_003823628.1 KEGG: hmo:HM1_1152 d,d-heptose 1,7-bisphosphate phosphatase subfamily, TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Nucleotidyl transferase; Haloacid dehalogenase domain protein hydrolase YP_003823629.1 PFAM: glycosyl transferase family 2; KEGG: cth:Cthe_2557 glycosyl transferase family protein YP_003823630.1 PFAM: glycosyl transferase family 2; KEGG: dsy:DSY3021 hypothetical protein YP_003823631.1 PFAM: flagellin domain protein; KEGG: cbk:CLL_A3427 flagellin YP_003823632.1 KEGG: amt:Amet_0741 hypothetical protein YP_003823633.1 KEGG: eel:EUBELI_01176 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003823634.1 KEGG: cpy:Cphy_2855 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003823635.1 KEGG: cro:ROD_28921 5-keto-4-deoxyuronate isomerase; PFAM: KduI/IolB isomerase YP_003823636.1 KEGG: ppd:Ppro_0042 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer YP_003823637.1 KEGG: pjd:Pjdr2_2517 collagen triple helix repeat protein; manually curated; PFAM: Collagen triple helix repeat YP_003823638.1 PFAM: UvrD/REP helicase; KEGG: spx:SPG_1254 ATP-dependent DNA helicase YP_003823639.1 KEGG: sss:SSUSC84_0840 hypothetical protein YP_003823640.1 PFAM: Recombinase; Resolvase domain; KEGG: ere:EUBREC_0165 cassette chromosome recombinase B YP_003823641.1 PFAM: Recombinase; Resolvase domain; KEGG: ere:EUBREC_3529 site-specific recombinase YP_003823642.1 PFAM: Recombinase; Resolvase domain; KEGG: ere:EUBREC_3529 site-specific recombinase YP_003823643.1 KEGG: ckr:CKR_0221 hypothetical protein YP_003823644.1 SMART: helicase c2; KEGG: aca:ACP_1651 DnaQ family exonuclease/DinG family helicase YP_003823645.1 PFAM: Sigma-70 region 4 type 2; KEGG: spj:MGAS2096_Spy1105 RNA polymerase ECF-type sigma factor YP_003823646.1 KEGG: dhd:Dhaf_2434 cell wall/surface repeat protein; PFAM: Peptidoglycan-binding lysin domain; S-layer domain protein; Listeria/Bacterioides repeat protein; SMART: Peptidoglycan-binding LysM YP_003823648.1 PFAM: metallophosphoesterase; KEGG: sun:SUN_0863 hypothetical protein YP_003823649.1 KEGG: afn:Acfer_0033 hypothetical protein YP_003823650.1 KEGG: dhd:Dhaf_2425 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver YP_003823651.1 KEGG: spj:MGAS2096_Spy1105 RNA polymerase ECF-type sigma factor; manually curated; PFAM: Sigma-70 region 4 type 2 YP_003823652.1 TIGRFAM: cell wall/surface repeat protein; PFAM: Listeria/Bacterioides repeat protein; S-layer domain protein; Peptidoglycan-binding lysin domain; KEGG: dhd:Dhaf_2434 cell wall/surface repeat protein; SMART: Peptidoglycan-binding LysM YP_003823653.1 KEGG: dhd:Dhaf_2434 cell wall/surface repeat protein YP_003823654.1 KEGG: dhd:Dhaf_2433 hypothetical protein YP_003823655.1 KEGG: dhd:Dhaf_2432 hypothetical protein YP_003823656.1 PFAM: Protein of unknown function DUF2207, membrane; KEGG: dhd:Dhaf_2431 ribosomal protein S14 YP_003823657.1 PFAM: LemA family protein; KEGG: dhd:Dhaf_2430 LemA family protein YP_003823658.1 KEGG: dhd:Dhaf_2429 hypothetical protein YP_003823659.1 KEGG: dhd:Dhaf_2429 hypothetical protein YP_003823660.1 PFAM: SH3 type 3 domain protein; KEGG: dhd:Dhaf_2427 hypothetical protein YP_003823661.1 KEGG: dhd:Dhaf_2426 transcriptional regulator, XRE family YP_003823662.1 KEGG: dhd:Dhaf_2425 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver YP_003823663.1 KEGG: dhd:Dhaf_2424 signal transduction histidine kinase regulating citrate/malate metabolism YP_003823664.1 KEGG: spj:MGAS2096_Spy1105 RNA polymerase ECF-type sigma factor YP_003823665.1 KEGG: dhd:Dhaf_2434 cell wall/surface repeat protein; PFAM: Fibronectin type III domain protein; S-layer domain protein; cell wall binding repeat-containing protein; SMART: Fibronectin type III domain protein YP_003823666.1 KEGG: ppw:PputW619_2936 two component transcriptional regulator YP_003823667.1 KEGG: smt:Smal_3110 response regulator receiver protein YP_003823668.1 KEGG: cce:Ccel_1167 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver YP_003823669.1 KEGG: kpn:KPN_00994 SD repeat-containing cell surface protein precursor YP_003823670.1 PFAM: ATP-binding region ATPase domain protein; KEGG: cdl:CDR20291_3127 two-component sensor histidine kinase YP_003823671.1 KEGG: dhd:Dhaf_2434 cell wall/surface repeat protein; PFAM: Peptidoglycan-binding lysin domain; S-layer domain protein; SMART: Peptidoglycan-binding LysM YP_003823672.1 PFAM: regulatory protein TetR; KEGG: cbf:CLI_1124 TetR family transcriptional regulator YP_003823673.1 KEGG: lmy:LM5923_1815 hypothetical protein YP_003823674.1 KEGG: aoe:Clos_1875 hypothetical protein YP_003823675.1 KEGG: cpy:Cphy_3539 hypothetical protein YP_003823676.1 KEGG: cce:Ccel_3127 hypothetical protein YP_003823677.1 KEGG: aoe:Clos_1880 hypothetical protein YP_003823678.1 KEGG: cal:CaO19.9368 possible Fe II, 2-oxoglutarate-dependent dioxygenase; similar to S. cerevisiae YER049W YP_003823679.1 KEGG: dae:Dtox_1494 hypothetical protein YP_003823680.1 KEGG: dae:Dtox_1493 hypothetical protein YP_003823681.1 KEGG: dae:Dtox_1492 hypothetical protein YP_003823682.1 KEGG: lmy:LM5923_1838 hypothetical protein YP_003823683.1 KEGG: dsy:DSY4659 hypothetical protein YP_003823684.1 KEGG: dsy:DSY0057 hypothetical protein YP_003823685.1 KEGG: pth:PTH_2463 hypothetical protein YP_003823686.1 PFAM: type II secretion system protein E; KEGG: cce:Ccel_2776 type II secretion system protein E YP_003823687.1 KEGG: xfa:XF1762 hypothetical protein YP_003823688.1 KEGG: dae:Dtox_1486 hypothetical protein YP_003823689.1 PFAM: SAF domain protein; KEGG: dsy:DSY0060 hypothetical protein YP_003823690.1 PFAM: peptidase A24A prepilin type IV; KEGG: cce:Ccel_2779 peptidase A24A prepilin type IV YP_003823691.1 KEGG: dwi:Dwil_GK12780 GK12780 gene product from transcript GK12780-RA YP_003823692.1 KEGG: cth:Cthe_1728 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase YP_003823693.1 KEGG: aoe:Clos_1909 hypothetical protein YP_003823694.1 KEGG: fpl:Ferp_0980 transcriptional regulator, XRE family YP_003823695.1 KEGG: cce:Ccel_3144 hypothetical protein YP_003823696.1 KEGG: aoe:Clos_1910 hypothetical protein YP_003823697.1 PFAM: SpoVG family protein; KEGG: bpu:BPUM_0033 regulatory protein SpoVG YP_003823698.1 KEGG: dae:Dtox_1483 hypothetical protein YP_003823699.1 KEGG: aoe:Clos_1911 hypothetical protein YP_003823700.1 PFAM: TRAG family protein; KEGG: cce:Ccel_3153 TraG family protein YP_003823701.1 KEGG: tex:Teth514_1236 hypothetical protein YP_003823702.1 KEGG: pfh:PFHG_00050 conserved hypothetical protein YP_003823703.1 KEGG: drm:Dred_0891 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003823704.1 KEGG: cce:Ccel_3178 hypothetical protein YP_003823705.1 KEGG: cma:Cmaq_0634 protein of unknown function DUF699 ATPase YP_003823706.1 manually curated; KEGG: cce:Ccel_3154 hypothetical protein YP_003823707.1 KEGG: dae:Dtox_0433 hypothetical protein YP_003823708.1 KEGG: ptm:GSPATT00020147001 hypothetical protein YP_003823709.1 KEGG: cpb:Cphamn1_0620 hypothetical protein YP_003823710.1 KEGG: cce:Ccel_3160 hypothetical protein YP_003823711.1 KEGG: aoe:Clos_2820 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003823712.1 KEGG: dsy:DSY4672 hypothetical protein; TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter YP_003823713.1 PFAM: Arsenical resistance operon trans-acting repressor ArsD; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: chy:CHY_1710 hypothetical protein YP_003823714.1 KEGG: dsy:DSY4598 hypothetical protein; TIGRFAM: arsenite-activated ATPase ArsA YP_003823715.1 KEGG: dsy:DSY4671 hypothetical protein; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_003823716.1 KEGG: cce:Ccel_3161 zinc finger CHC2-family protein YP_003823717.1 KEGG: dhd:Dhaf_2444 hypothetical protein YP_003823718.1 KEGG: lmy:LM5923_1823 hypothetical protein YP_003823719.1 KEGG: dae:Dtox_1479 S-layer domain protein YP_003823720.1 KEGG: efa:EF2322 hypothetical protein YP_003823721.1 KEGG: dhd:Dhaf_2417 hypothetical protein YP_003823722.1 KEGG: ere:EUBREC_3564 possible adenine-specific DNA methylase; PFAM: helicase domain protein; N-6 DNA methylase; SMART: helicase domain protein; DEAD-like helicase YP_003823723.1 KEGG: aoe:Clos_1923 nuclease; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_003823724.1 KEGG: amt:Amet_3994 cobyrinic acid a,c-diamide synthase YP_003823725.1 PFAM: Collagen triple helix repeat; KEGG: bat:BAS1130 hypothetical protein YP_003823726.1 PFAM: glycosyl transferase family 2; KEGG: dae:Dtox_3127 glycosyl transferase family 2 YP_003823727.1 PFAM: glycosyl transferase family 2; KEGG: dae:Dtox_3123 hypothetical protein YP_003823728.1 PFAM: class II aldolase/adducin family protein; KEGG: dsa:Desal_3031 class II aldolase/adducin family protein YP_003823729.1 TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized protein; KEGG: ctc:CTC00945 methylthioribose-1-phosphate isomerase; PFAM: initiation factor 2B related YP_003823730.1 TIGRFAM: 5-methylthioribose kinase; KEGG: ctc:CTC00946 methylthioribose kinase; PFAM: aminoglycoside phosphotransferase YP_003823731.1 PFAM: Na+/H+ antiporter NhaC-like; KEGG: fnu:FN1414 Na+/H+ antiporter NhaC YP_003823732.1 KEGG: ate:Athe_0842 transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_003823733.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: sga:GALLO_2129 iron-containing alcohol dehydrogenase YP_003823734.1 KEGG: bvu:BVU_1829 DNA polymerase III, delta subunit YP_003823735.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: aoe:Clos_2686 CDP-alcohol phosphatidyltransferase YP_003823736.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbt:CLH_2057 acetyltransferase, GNAT family YP_003823737.1 PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; Peptidoglycan-binding lysin domain; KEGG: swo:Swol_1594 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterases-like protein; SMART: Peptidoglycan-binding LysM YP_003823738.1 KEGG: cpy:Cphy_0553 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein YP_003823739.1 KEGG: ere:EUBREC_2921 histidine--tRNA ligase; PFAM: tRNA synthetase class II (G H P and S) YP_003823740.1 PFAM: Radical SAM domain protein; KEGG: ere:EUBREC_2929 coproporphyrinogen dehydrogenase; SMART: Elongator protein 3/MiaB/NifB YP_003823741.1 KEGG: cpy:Cphy_0549 beta-lactamase domain-containing protein YP_003823742.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: RelA/SpoT family protein; KEGG: cpy:Cphy_0548 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain protein; amino acid-binding ACT domain protein YP_003823743.1 TIGRFAM: adenosine deaminase; KEGG: ere:EUBREC_0295 adenosine deaminase; PFAM: adenosine/AMP deaminase YP_003823744.1 KEGG: cpy:Cphy_1125 glycoside hydrolase family 3 protein; PFAM: glycoside hydrolase family 3 domain protein YP_003823745.1 PFAM: conserved hypothetical protein; KEGG: cpy:Cphy_1124 hypothetical protein YP_003823746.1 PFAM: LmbE family protein; KEGG: acl:ACL_1201 N-acetylglucosaminylphosphatidylinositol deacetylase related protein YP_003823747.1 PFAM: GCN5-related N-acetyltransferase; KEGG: acl:ACL_1202 GNAT family acetyltransferase YP_003823748.1 PFAM: glycoside hydrolase family 4; KEGG: bsu:BSU38560 6-phospho-beta-glucosidase YP_003823749.1 PFAM: ROK family protein; KEGG: ctu:Ctu_01350 hypothetical protein YP_003823750.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cpy:Cphy_1126 ATPase BadF/BadG/BcrA/BcrD type YP_003823751.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gym:GYMC10_5637 binding-protein-dependent transport systems inner membrane component YP_003823752.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3124 sugar ABC transporter permease YP_003823753.1 PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC3125 sugar ABC transporter substrate-binding protein YP_003823754.1 KEGG: apv:Apar_1199 glucokinase regulatory-like protein; TIGRFAM: glucokinase regulatory-like protein; PFAM: sugar isomerase (SIS) YP_003823755.1 KEGG: cpy:Cphy_1155 nucleic acid binding OB-fold tRNA/helicase-type YP_003823756.1 PFAM: YibE/F family protein; KEGG: cpy:Cphy_1156 YibE/F family protein YP_003823757.1 KEGG: eel:EUBELI_00962 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003823758.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: amt:Amet_2523 tyrosine recombinase XerD YP_003823759.1 KEGG: mta:Moth_1503 hypothetical protein YP_003823760.1 PFAM: NUDIX hydrolase; KEGG: eel:EUBELI_01116 ADP-ribose pyrophosphatase YP_003823761.1 TIGRFAM: pyrroline-5-carboxylate reductase; KEGG: eel:EUBELI_01117 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_003823762.1 KEGG: cbi:CLJ_B2418 transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_003823763.1 KEGG: cby:CLM_2408 gluconate permease; TIGRFAM: gluconate transporter; PFAM: Gluconate transporter YP_003823764.1 TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: cbl:CLK_1647 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_003823765.1 PFAM: type III effector Hrp-dependent outers; KEGG: cno:NT01CX_0636 hypothetical protein YP_003823766.1 KEGG: cce:Ccel_3213 anthranilate synthase component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein YP_003823767.1 KEGG: cce:Ccel_3214 glutamine amidotransferase of anthranilate synthase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I YP_003823768.1 KEGG: cce:Ccel_3215 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like YP_003823769.1 KEGG: cce:Ccel_3216 indole-3-glycerol phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase YP_003823770.1 KEGG: cce:Ccel_3217 N-(5'phosphoribosyl)anthranilate isomerase (PRAI); PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) YP_003823771.1 KEGG: cth:Cthe_1412 tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003823772.1 TIGRFAM: tryptophan synthase, alpha subunit; KEGG: cth:Cthe_1411 tryptophan synthase, alpha chain; PFAM: tryptophan synthase alpha chain YP_003823773.1 KEGG: eel:EUBELI_00711 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC YP_003823774.1 KEGG: aoe:Clos_0767 ThiW protein; TIGRFAM: thiW protein; PFAM: ThiW family protein YP_003823775.1 KEGG: cac:CAC3096 hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase YP_003823776.1 KEGG: cbk:CLL_A3104 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_003823777.1 TIGRFAM: phosphomethylpyrimidine kinase; KEGG: apr:Apre_1397 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_003823778.1 PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: tex:Teth514_0265 phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit YP_003823779.1 PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: bcu:BCAH820_3049 PTS system, lactose/cellobiose-specific IIB subunit YP_003823780.1 TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; KEGG: lwe:lwe0273 PTS system, IIC component; PFAM: phosphotransferase system EIIC YP_003823781.1 KEGG: lmc:Lm4b_00328 phospho-beta-glucosidase and phospho-beta-galactosidase; PFAM: glycoside hydrolase family 1 YP_003823782.1 PFAM: PRD domain protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: lmy:LM5923_0342 hypothetical protein; SMART: regulatory protein DeoR YP_003823783.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: cpy:Cphy_1728 Ku protein; SMART: Ku domain protein YP_003823784.1 PFAM: ATP dependent DNA ligase; KEGG: drm:Dred_2002 ATP dependent DNA ligase YP_003823785.1 KEGG: ckr:CKR_3036 hypothetical protein; PFAM: Transcription regulator,histidine kinase sensor-like; chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_003823786.1 PFAM: UbiA prenyltransferase; KEGG: cce:Ccel_1113 UbiA prenyltransferase YP_003823787.1 KEGG: cpy:Cphy_2502 hypothetical protein YP_003823788.1 KEGG: bay:RBAM_029620 DNA-binding transcriptional regulator FrlR; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003823789.1 PFAM: PfkB domain protein; KEGG: bsu:BSU32570 fructoselysine kinase YP_003823790.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU32580 fructose-amino acid permease YP_003823791.1 KEGG: yurN; ABC transporter permease; manually curated; PFAM: binding-protein-dependent transport systems inner membrane component YP_003823792.1 PFAM: extracellular solute-binding protein family 1; KEGG: yurO; ABC transporter substrate-binding protein YP_003823793.1 PFAM: sugar isomerase (SIS); KEGG: bsu:BSU32610 fructoselysine-6-P-deglycase YP_003823794.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: phe:Phep_4269 extradiol ring-cleavage dioxygenase class III protein subunit B YP_003823795.1 KEGG: cdf:CD0587 hypothetical protein YP_003823796.1 PFAM: Peptidase M23; KEGG: cpy:Cphy_2289 peptidase M23B YP_003823797.1 PFAM: conserved hypothetical protein; KEGG: eel:EUBELI_00766 hypothetical protein YP_003823798.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ere:EUBREC_1874 hypothetical protein YP_003823799.1 TIGRFAM: phosphoserine aminotransferase; KEGG: cpy:Cphy_3383 phosphoserine aminotransferase; PFAM: aminotransferase class V YP_003823800.1 KEGG: eel:EUBELI_00763 acetolactate synthase; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding YP_003823801.1 TIGRFAM: dihydroxy-acid dehydratase; KEGG: cpy:Cphy_3348 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_003823802.1 TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: eel:EUBELI_00761 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_003823803.1 KEGG: cyb:CYB_1660 lipoprotein YP_003823804.1 PFAM: ABC-type uncharacterised transport system; KEGG: ere:EUBREC_2266 ABC-type transport system involved in multi-copper enzyme maturation, permease component YP_003823805.1 KEGG: ate:Athe_2367 hypothetical protein YP_003823806.1 KEGG: ere:EUBREC_2267 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823807.1 PFAM: 8-oxoguanine DNA glycosylase domain protein; KEGG: cpy:Cphy_2022 8-oxoguanine DNA glycosylase domain-containing protein; SMART: HhH-GPD family protein YP_003823808.1 KEGG: HAD superfamily hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003823809.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: ere:EUBREC_1849 transcription elongation factor GreA YP_003823810.1 KEGG: nth:Nther_2589 hypothetical protein YP_003823811.1 PFAM: hydrogenase large subunit domain protein; KEGG: afn:Acfer_1893 hydrogenase large subunit domain protein YP_003823812.1 PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: cpy:Cphy_1139 tRNA synthetase class II (D K and N) YP_003823813.1 manually curated; KEGG: cpy:Cphy_0993 hypothetical protein YP_003823814.1 KEGG: cpy:Cphy_0991 helix-turn-helix type 11 domain-containing protein YP_003823815.1 KEGG: mmy:MSC_0456 prolipoprotein YP_003823816.1 PFAM: integrase family protein; KEGG: fre:Franean1_5518 integrase family protein YP_003823817.1 PFAM: integrase family protein; KEGG: ate:Athe_1029 integrase family protein YP_003823818.1 KEGG: bvu:BVU_0717 hypothetical protein YP_003823819.1 PFAM: PemK family protein; KEGG: ppe:PEPE_1557 toxin-antitoxin addiction module toxin component MazF (an endoRNAse) YP_003823820.1 KEGG: cac:CAC1578 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003823821.1 KEGG: sso:SSO2950 hypothetical protein YP_003823822.1 PFAM: protein of unknown function DUF955; KEGG: cth:Cthe_1746 hypothetical protein YP_003823823.1 KEGG: shi:Shel_22190 hypothetical protein YP_003823824.1 KEGG: fma:FMG_0223 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003823825.1 PFAM: protein of unknown function DUF955; KEGG: spi:MGAS10750_Spy1713 hypothetical protein YP_003823826.1 KEGG: ere:EUBREC_3548 hypothetical protein YP_003823827.1 KEGG: asu:Asuc_1505 hypothetical protein YP_003823828.1 KEGG: aag:AaeL_AAEL003280 serine protease YP_003823829.1 KEGG: aeh:Mlg_0384 hypothetical protein YP_003823830.1 KEGG: cbt:CLH_2472 hypothetical protein YP_003823831.1 KEGG: dsy:DSY0680 hypothetical protein YP_003823832.1 PFAM: PglZ domain protein; KEGG: chy:CHY_2652 hypothetical protein YP_003823833.1 KEGG: cbk:CLL_A2620 hypothetical protein YP_003823834.1 KEGG: amt:Amet_0446 hypothetical protein YP_003823835.1 KEGG: bfs:pBF9343.33c hypothetical protein YP_003823836.1 KEGG: chy:CHY_2653 restriction enzyme YP_003823837.1 KEGG: chy:CHY_2654 hypothetical protein YP_003823838.1 PFAM: Domain of unknown function DUF1788; KEGG: msi:Msm_1750 hypothetical protein YP_003823839.1 PFAM: Protein of unkown function DUF1819 inner membrane; KEGG: chy:CHY_2656 hypothetical protein YP_003823840.1 KEGG: hmo:HM1_0630 hypothetical protein YP_003823841.1 KEGG: fsu:Fisuc_1356 von Willebrand factor type A YP_003823842.1 KEGG: cce:Ccel_0191 Appr-1-p processing domain protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein YP_003823843.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: ere:EUBREC_2727 hypothetical protein YP_003823844.1 KEGG: rno:287441 zinc finger and BTB domain containing 4 YP_003823845.1 KEGG: ppp:PHYPADRAFT_165546 hypothetical protein YP_003823846.1 PFAM: mobilisation protein; KEGG: ere:EUBREC_2725 hypothetical protein YP_003823847.1 KEGG: ere:EUBREC_3564 possible adenine-specific DNA methylase; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003823848.1 KEGG: cdf:CD1104B hypothetical protein YP_003823849.1 KEGG: cdf:CD1105 DNA primase YP_003823850.1 KEGG: saj:SaurJH9_0873 hypothetical protein YP_003823851.1 KEGG: ere:EUBREC_3563 hypothetical protein YP_003823852.1 TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; KEGG: efa:EF2312 DNA topoisomerase III; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein YP_003823853.1 PFAM: regulatory protein TetR; KEGG: eel:EUBELI_20010 hypothetical protein YP_003823854.1 KEGG: eel:EUBELI_20011 hypothetical protein YP_003823855.1 KEGG: cdf:CD1107 hypothetical protein; PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein YP_003823856.1 KEGG: ere:EUBREC_2718 hypothetical protein YP_003823857.1 PFAM: NLP/P60 protein; KEGG: ckr:CKR_0237 hypothetical protein YP_003823858.1 KEGG: efa:EF2320 TraE protein YP_003823859.1 KEGG: cdf:CD1111 hypothetical protein YP_003823860.1 KEGG: ere:EUBREC_2710 hypothetical protein YP_003823861.1 KEGG: cdf:CD1113 conjugative transfer protein YP_003823862.1 KEGG: cdf:CD1113 conjugative transfer protein YP_003823863.1 PFAM: TRAG family protein; KEGG: cdf:CD1115 conjugal transfer protein YP_003823864.1 KEGG: ere:EUBREC_3603 hypothetical protein YP_003823865.1 KEGG: dsy:DSY4638 hypothetical protein YP_003823866.1 KEGG: pct:PC1_2311 hypothetical protein YP_003823867.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: spj:MGAS2096_Spy1142 chromosome partitioning protein ParB; SMART: ParB domain protein nuclease YP_003823868.1 PFAM: IstB domain protein ATP-binding protein; KEGG: cth:Cthe_2467 hypothetical protein YP_003823869.1 KEGG: cdf:CD1118 hypothetical protein YP_003823870.1 KEGG: dac:Daci_3401 hypothetical protein YP_003823871.1 PFAM: BRO domain protein; phage antirepressor protein; KEGG: cth:Cthe_1649 BRO-like protein YP_003823872.1 PFAM: ribosomal protein S9; KEGG: cpy:Cphy_3627 ribosomal protein S9 YP_003823873.1 KEGG: cpy:Cphy_3628 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13 YP_003823874.1 KEGG: ere:EUBREC_2998 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain YP_003823875.1 PFAM: cobalt transport protein; KEGG: eel:EUBELI_00330 cobalt/nickel transport system permease protein YP_003823876.1 KEGG: ere:EUBREC_3000 ABC-type cobalt transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823877.1 KEGG: cpy:Cphy_3637 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823878.1 PFAM: cell wall binding repeat-containing protein; KEGG: spn:SP_2201 choline binding protein D YP_003823879.1 PFAM: cell wall binding repeat-containing protein; KEGG: spw:SPCG_0120 pneumococcal surface protein A YP_003823880.1 KEGG: cpy:Cphy_3638 ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17 YP_003823881.1 TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; KEGG: cpy:Cphy_3639 DNA-directed RNA polymerase, alpha subunit; SMART: RNA polymerase RpoA/D/Rpb3-type YP_003823882.1 TIGRFAM: ribosomal protein S4; PFAM: RNA-binding S4 domain protein; ribosomal protein S4; KEGG: eel:EUBELI_00325 small subunit ribosomal protein S4; SMART: RNA-binding S4 domain protein YP_003823883.1 KEGG: cpy:Cphy_3641 ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11 YP_003823884.1 KEGG: cpy:Cphy_3642 ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13 YP_003823885.1 manually curated; TIGRFAM: ribosomal protein L36; KEGG: ere:EUBREC_0441 hypothetical protein; PFAM: ribosomal protein L36 YP_003823886.1 KEGG: ere:EUBREC_0440 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein YP_003823887.1 KEGG: eel:EUBELI_00321 hypothetical protein YP_003823888.1 KEGG: ere:EUBREC_0439 methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24 YP_003823889.1 KEGG: eel:EUBELI_00320 nucleoside-triphosphate--adenylate kinase; TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain protein YP_003823890.1 KEGG: ere:EUBREC_0437 preprotein translocase subunit SecY; TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein YP_003823891.1 TIGRFAM: ribosomal protein L15; KEGG: eel:EUBELI_00318 large subunit ribosomal protein L15 YP_003823892.1 KEGG: eel:EUBELI_00317 hypothetical protein; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30 YP_003823893.1 KEGG: eel:EUBELI_00316 small subunit ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: Ribosomal protein S5 ; ribosomal protein S5 domain protein YP_003823894.1 KEGG: eel:EUBELI_00315 large subunit ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E YP_003823895.1 KEGG: eel:EUBELI_00314 large subunit ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain YP_003823896.1 PFAM: ribosomal protein S8; KEGG: cpy:Cphy_3653 ribosomal protein S8 YP_003823897.1 PFAM: ribosomal protein S14; KEGG: aoe:Clos_0505 30S ribosomal protein S14 YP_003823898.1 KEGG: ere:EUBREC_0430 50S ribosomal protein L5 YP_003823899.1 TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: ere:EUBREC_0429 50S ribosomal protein L24; SMART: KOW domain protein YP_003823900.1 KEGG: ere:EUBREC_0428 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e YP_003823901.1 KEGG: cpy:Cphy_3658 ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17 YP_003823902.1 KEGG: eel:EUBELI_00307 hypothetical protein; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29 YP_003823903.1 KEGG: cpy:Cphy_3660 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L10e/L16 YP_003823904.1 TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; KEGG: ere:EUBREC_0424 SSU ribosomal protein S3P; SMART: KH domain protein YP_003823905.1 KEGG: eel:EUBELI_00304 large subunit ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17 YP_003823906.1 KEGG: ere:EUBREC_0422 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15 YP_003823907.1 KEGG: ere:EUBREC_0421 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2 YP_003823908.1 PFAM: Ribosomal protein L25/L23; KEGG: ere:EUBREC_0420 50S ribosomal protein L23 YP_003823909.1 PFAM: ribosomal protein L4/L1e; KEGG: ere:EUBREC_0419 ribosomal protein L4/L1e YP_003823910.1 KEGG: eel:EUBELI_00299 large subunit ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3 YP_003823911.1 KEGG: cpy:Cphy_3668 ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10 YP_003823912.1 PFAM: cell wall binding repeat-containing protein; KEGG: shi:Shel_14460 glucan-binding domain-containing protein YP_003823913.1 KEGG: ere:EUBREC_0416 hypothetical protein YP_003823914.1 KEGG: drm:Dred_3043 hypothetical protein YP_003823915.1 KEGG: bba:Bd2697 hypothetical protein YP_003823916.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: subtilisin like serine protease YP_003823917.1 PFAM: protein of unknown function DUF871; KEGG: cbk:CLL_A3061 outer surface protein YP_003823918.1 KEGG: cbk:CLL_A3060 phosphotransferase system domain protein; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003823919.1 KEGG: apv:Apar_1199 glucokinase regulatory-like protein; TIGRFAM: glucokinase regulatory-like protein; PFAM: sugar isomerase (SIS) YP_003823920.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: apv:Apar_1200 transcriptional regulator, RpiR family YP_003823921.1 KEGG: gym:GYMC10_0344 hypothetical protein YP_003823922.1 PFAM: sulfatase; KEGG: ere:EUBREC_0354 sulfatase YP_003823923.1 KEGG: eel:EUBELI_00288 hypothetical protein; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain protein YP_003823924.1 KEGG: ere:EUBREC_0382 translation elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain protein YP_003823925.1 KEGG: ere:EUBREC_0381 ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7 YP_003823926.1 KEGG: eel:EUBELI_00285 small subunit ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23 YP_003823927.1 TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; KEGG: cpy:Cphy_3686 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase I subunit A domain protein YP_003823928.1 KEGG: cpy:Cphy_3687 DNA-directed RNA polymerase, beta subunit; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; RNA polymerase Rpb2 domain 3; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7 YP_003823929.1 KEGG: ere:EUBREC_1005 hypothetical protein YP_003823930.1 PFAM: Manganese/iron superoxide dismutase-like; KEGG: str:Sterm_3359 superoxide dismutase YP_003823931.1 PFAM: cell wall binding repeat-containing protein; KEGG: cac:CAC1079 hypothetical protein YP_003823932.1 PFAM: Choline/ethanolamine kinase; Nucleotidyl transferase; KEGG: tde:TDE1260 cholinephosphate cytidylyltransferase/choline kinase YP_003823933.1 PFAM: cell wall binding repeat-containing protein; KEGG: snm:SP70585_0197 surface protein PspA YP_003823934.1 KEGG: ere:EUBREC_2636 glycoside hydrolase family 25; PFAM: glycoside hydrolase family 25; cell wall binding repeat-containing protein; SMART: Glycoside hydrolase, family 25 subgroup YP_003823935.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_1606 glycosyl transferase family 2 YP_003823936.1 KEGG: ctp:CTRG_05387 hypothetical protein YP_003823937.1 KEGG: aac:Aaci_2435 spore germination protein YP_003823938.1 KEGG: rcu:RCOM_2145050 hypothetical protein YP_003823939.1 PFAM: sugar isomerase (SIS); KEGG: tte:TTE0762 phosphoheptose isomerase YP_003823940.1 KEGG: gbm:Gbem_2506 D,D-heptose 1,7-bisphosphate phosphatase; TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; histidinol-phosphate phosphatase family protein; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003823941.1 PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: cac:CAC3055 sugar kinase YP_003823942.1 PFAM: Nucleotidyl transferase; KEGG: cac:CAC3056 nucleoside-diphosphate-sugar pyrophosphorylase YP_003823943.1 PFAM: acyltransferase 3; KEGG: mma:MM_2099 hypothetical protein YP_003823944.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: reu:Reut_A0718 glycosyl transferase family protein YP_003823945.1 PFAM: Methyltransferase type 11; KEGG: cbe:Cbei_4749 methyltransferase type 12 YP_003823946.1 KEGG: cbe:Cbei_4750 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823947.1 PFAM: ABC transporter; KEGG: cbk:CLL_A3248 Wzm YP_003823948.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: dae:Dtox_4139 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_003823949.1 PFAM: inner-membrane translocator; KEGG: cpy:Cphy_1587 monosaccharide-transporting ATPase YP_003823950.1 KEGG: cpy:Cphy_1586 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003823951.1 KEGG: cpy:Cphy_1585 solute-binding component of ABC transporter YP_003823952.1 KEGG: cac:CAC3409 LysR family transcriptional regulator; manually curated; PFAM: regulatory protein LysR; LysR substrate-binding YP_003823953.1 KEGG: drt:Dret_1766 hypothetical protein YP_003823954.1 PFAM: sodium:neurotransmitter symporter; KEGG: sth:STH442 sodium- and chloride-dependent transporter, TnaT YP_003823955.1 KEGG: dhd:Dhaf_1324 tryptophanase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003823956.1 KEGG: cpy:Cphy_1584 periplasmic binding protein/LacI transcriptional regulator YP_003823957.1 KEGG: cpy:Cphy_1583 two component AraC family transcriptional regulator; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003823958.1 KEGG: cpy:Cphy_1582 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein YP_003823959.1 KEGG: cpy:Cphy_1581 ABC-type sugar transport system periplasmic component-like protein YP_003823960.1 PFAM: glycosyl transferase family 2; KEGG: cpy:Cphy_3103 glycosyl transferase family protein YP_003823961.1 PFAM: Protein of unknown function DUF2142, membrane; KEGG: cac:CAC0024 hypothetical protein YP_003823962.1 KEGG: stl:stu1481 hypothetical protein YP_003823963.1 PFAM: glycosyl transferase family 2; KEGG: stl:stu1482 glycosyltransferase YP_003823964.1 KEGG: eel:EUBELI_00100 hypothetical protein YP_003823965.1 PFAM: polysaccharide biosynthesis protein; KEGG: cth:Cthe_2335 polysaccharide biosynthesis protein YP_003823966.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; cell wall binding repeat-containing protein; KEGG: eel:EUBELI_00022 hypothetical protein YP_003823967.1 PFAM: glycosyl transferase family 2; KEGG: eat:EAT1b_1183 glycosyl transferase family 2 YP_003823968.1 PFAM: protein of unknown function DUF201; KEGG: xcb:XC_2255 hypothetical protein YP_003823969.1 KEGG: eel:EUBELI_00789 hypothetical protein YP_003823970.1 KEGG: pdi:BDI_0430 1-aminocyclopropane-1-carboxylate deaminase YP_003823971.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: pmo:Pmob_0937 DegT/DnrJ/EryC1/StrS aminotransferase YP_003823972.1 PFAM: glycosyl transferase family 2; KEGG: dhd:Dhaf_4473 glycosyl transferase family 2 YP_003823973.1 PFAM: glycosyl transferase family 2; KEGG: fsu:Fisuc_2046 glycosyl transferase family 2 YP_003823974.1 PFAM: glycosyl transferase family 8; KEGG: sss:SSUSC84_1150 glycosyl transferase family protein YP_003823975.1 TIGRFAM: UDP-galactopyranose mutase; KEGG: bfs:BF1370 LPS biosynthesis related UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like YP_003823976.1 PFAM: inner-membrane translocator; KEGG: amt:Amet_0458 monosaccharide-transporting ATPase YP_003823977.1 KEGG: str:Sterm_1486 periplasmic binding protein/LacI transcriptional regulator YP_003823978.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ere:EUBREC_2881 AP-endonuclease/AP-lyase YP_003823979.1 PFAM: oxidoreductase domain protein; KEGG: amt:Amet_0460 oxidoreductase domain-containing protein YP_003823980.1 KEGG: bpy:Bphyt_0961 transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003823981.1 KEGG: cpy:Cphy_3548 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain YP_003823982.1 PFAM: toxic anion resistance family protein; KEGG: cbe:Cbei_0754 toxic anion resistance family protein YP_003823983.1 KEGG: cbe:Cbei_0753 hypothetical protein YP_003823984.1 KEGG: eel:EUBELI_00152 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase YP_003823986.1 KEGG: ccu:Ccur_04190 sortase, SrtB family; TIGRFAM: sortase, SrtB family; PFAM: peptidase C60 sortase A and B YP_003823987.1 KEGG: shi:Shel_24290 DNA-binding transcriptional activator of the SARP family YP_003823988.1 TIGRFAM: methylglyoxal synthase; KEGG: cpy:Cphy_3100 methylglyoxal synthase; PFAM: MGS domain protein YP_003823989.1 KEGG: inositol-1-monophosphatase/HD domain-containing protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003823990.1 KEGG: cbt:CLH_1705 protein containing cell adhesion domain; PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein YP_003823991.1 KEGG: ckr:CKR_1793 hypothetical protein YP_003823992.1 KEGG: hypothetical protein YP_003823993.1 KEGG: bbe:BBR47_16870 serine peptidase precursor YP_003823994.1 TIGRFAM: beta-galactosidase; KEGG: scl:sce7663 beta-glucosidase; PFAM: glycoside hydrolase family 1 YP_003823995.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eel:EUBELI_20528 multiple sugar transport system permease protein YP_003823996.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eel:EUBELI_20529 multiple sugar transport system permease protein YP_003823997.1 KEGG: eel:EUBELI_20530 hypothetical protein YP_003823998.1 KEGG: ere:EUBREC_1073 transcriptional regulator (LacI family); PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003823999.1 PFAM: glycosyltransferase 36; carbohydrate binding; glycosyltransferase 36 associated; KEGG: ere:EUBREC_1072 hypothetical protein YP_003824000.1 KEGG: cpy:Cphy_0463 peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like YP_003824001.1 PFAM: Recombinase; Resolvase domain; KEGG: dae:Dtox_3285 recombinase YP_003824002.1 KEGG: dae:Dtox_3286 hypothetical protein YP_003824003.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: cth:Cthe_3237 relaxase/mobilization nuclease domain-containing protein YP_003824004.1 KEGG: cth:Cthe_3236 hypothetical protein YP_003824005.1 KEGG: spj:MGAS2096_Spy1144 hypothetical protein YP_003824006.1 KEGG: cth:Cthe_3235 hypothetical protein YP_003824007.1 KEGG: dae:Dtox_3419 hypothetical protein YP_003824008.1 KEGG: dae:Dtox_3418 hypothetical protein YP_003824009.1 KEGG: amt:Amet_3967 hypothetical protein YP_003824010.1 PFAM: protein of unknown function DUF262; KEGG: amt:Amet_3966 hypothetical protein YP_003824011.1 KEGG: spn:SP_0558 hypothetical protein YP_003824012.1 KEGG: cbf:CLI_1983 methyl-accepting chemotaxis protein YP_003824013.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; KEGG: aoe:Clos_0834 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein YP_003824014.1 KEGG: lsa:LSA1720_a hypothetical protein YP_003824015.1 PFAM: Integrase catalytic region; KEGG: amt:Amet_4684 integrase catalytic subunit YP_003824016.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; histidine kinase HAMP region domain protein; Cache type 2 domain protein; metal-dependent phosphohydrolase HD sub domain; KEGG: amt:Amet_0967 diguanylate cyclase and metal dependent phosphohydrolase; SMART: GGDEF domain containing protein; PAS domain containing protein; histidine kinase HAMP region domain protein; metal-dependent phosphohydrolase HD region YP_003824018.1 KEGG: cpy:Cphy_1077 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003824019.1 TIGRFAM: 4-alpha-glucanotransferase; KEGG: cno:NT01CX_0969 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77 YP_003824020.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1076 binding-protein-dependent transport systems inner membrane component YP_003824021.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1075 binding-protein-dependent transport systems inner membrane component YP_003824022.1 PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_1074 extracellular solute-binding protein YP_003824023.1 PFAM: protein of unknown function DUF541; KEGG: shi:Shel_00770 hypothetical protein YP_003824024.1 PFAM: MscS Mechanosensitive ion channel; HerA-ATP synthase, barrel domain; KEGG: ere:EUBREC_1873 mechanosensitive channel protein YP_003824025.1 TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; KEGG: cth:Cthe_2191 1,4-alpha-glucan branching enzyme; SMART: alpha amylase catalytic sub domain YP_003824026.1 KEGG: cpy:Cphy_3296 hypothetical protein YP_003824027.1 KEGG: cpy:Cphy_2284 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region YP_003824028.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: cbt:CLH_1483 2-hydroxy-3-oxopropionate reductase YP_003824029.1 TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerase, RpiB/LacA/LacB family; KEGG: sth:STH2337 ribose-5-phosphate isomerase B; PFAM: Ribose/galactose isomerase YP_003824030.1 TIGRFAM: chorismate synthase; KEGG: ere:EUBREC_1882 chorismate synthase; PFAM: chorismate synthase YP_003824031.1 KEGG: eel:EUBELI_01332 6-phosphogluconolactonase YP_003824032.1 KEGG: cpy:Cphy_0898 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein YP_003824033.1 TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; KEGG: cpy:Cphy_0897 spermidine/putrescine ABC transporter ATPase subunit; SMART: AAA ATPase YP_003824034.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_0896 binding-protein-dependent transport systems inner membrane component YP_003824035.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_0895 ornithine carbamoyltransferase YP_003824036.1 PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_0894 extracellular solute-binding protein YP_003824037.1 TIGRFAM: DNA adenine methylase; KEGG: seu:SEQ_1570 DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_003824038.1 KEGG: seq:SZO_05780 DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_003824039.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cpy:Cphy_1602 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein YP_003824040.1 PFAM: 4-vinyl reductase 4VR; KEGG: gur:Gura_0328 4-vinyl reductase, 4VR YP_003824041.1 manually curated; PFAM: iron dependent repressor; KEGG: cth:Cthe_0620 DtxR family iron dependent repressor; SMART: iron dependent repressor YP_003824042.1 PFAM: integrase family protein; KEGG: efa:EF2255 phage integrase family site specific recombinase YP_003824043.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dhd:Dhaf_0502 diguanylate cyclase; SMART: GGDEF domain containing protein YP_003824044.1 KEGG: cbe:Cbei_2811 hypothetical protein YP_003824045.1 KEGG: cpy:Cphy_3308 hypothetical protein YP_003824046.1 KEGG: cce:Ccel_3189 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003824047.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cbe:Cbei_2157 glyoxalase/bleomycin resistance protein/dioxygenase YP_003824048.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tdn:Suden_1036 diguanylate cyclase; SMART: GGDEF domain containing protein YP_003824049.1 KEGG: cth:Cthe_0298 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer YP_003824050.1 KEGG: swo:Swol_1077 hypothetical protein YP_003824051.1 KEGG: dae:Dtox_0613 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer YP_003824052.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: cbe:Cbei_2460 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: EAL domain protein; GGDEF domain containing protein YP_003824053.1 KEGG: swo:Swol_1080 ATP-dependent transcriptional regulator-like protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003824054.1 KEGG: dhd:Dhaf_1963 helicase YP_003824055.1 KEGG: cpy:Cphy_0985 hypothetical protein YP_003824056.1 KEGG: cpy:Cphy_1397 hypothetical protein YP_003824057.1 KEGG: cbk:CLL_A0696 hypothetical protein YP_003824058.1 KEGG: gym:GYMC10_1105 DEAD/DEAH box helicase; PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003824059.1 PFAM: protein of unknown function DUF421; KEGG: amt:Amet_3726 hypothetical protein YP_003824060.1 PFAM: protein of unknown function DUF421; KEGG: amt:Amet_3726 hypothetical protein YP_003824061.1 KEGG: amt:Amet_3340 hypothetical protein YP_003824062.1 KEGG: ele:Elen_1835 alpha/beta hydrolase fold-3 domain protein YP_003824063.1 KEGG: gwc:GWCH70_2733 global transcriptional regulator, catabolite control protein A; PFAM: regulatory protein LacI; SMART: regulatory protein LacI YP_003824064.1 PFAM: major facilitator superfamily MFS_1; KEGG: cpf:CPF_0425 major facilitator family protein YP_003824065.1 PFAM: Na+/solute symporter; KEGG: csa:Csal_1068 Na+/solute symporter YP_003824067.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: cbl:CLK_2597 butyryl-CoA dehydrogenase YP_003824068.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: drm:Dred_0570 crotonobetainyl-CoA dehydrogenase YP_003824069.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ele:Elen_1825 enoyl-CoA hydratase/isomerase YP_003824070.1 KEGG: tex:Teth514_1470 beta-lactamase domain-containing protein YP_003824071.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sti:Sthe_3301 formyl-CoA transferase YP_003824072.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sti:Sthe_3003 formyl-CoA transferase YP_003824073.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: drm:Dred_0572 electron transfer flavoprotein YdiQ YP_003824074.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: drm:Dred_0573 electron transfer flavoprotein, alpha subunit YP_003824075.1 PFAM: AMP-dependent synthetase and ligase; KEGG: drm:Dred_0576 crotonobetaine/carnitine-CoA ligase YP_003824076.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: apr:Apre_1355 electron transfer flavoprotein alpha/beta-subunit YP_003824077.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: apr:Apre_1354 electron transfer flavoprotein alpha subunit YP_003824078.1 PFAM: 67 kDa myosin-cross-reactive antigen family protein; KEGG: cbk:CLL_A1991 myosin-cross-reactive antigen YP_003824079.1 PFAM: regulatory protein TetR; KEGG: amt:Amet_0294 TetR family transcriptional regulator YP_003824081.1 KEGG: str:Sterm_4077 dihydrofolate reductase YP_003824082.1 KEGG: cpy:Cphy_0159 RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; Methyltransferase type 11 YP_003824083.1 KEGG: cpy:Cphy_3818 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003824084.1 KEGG: ere:EUBREC_0098 cytidylate kinase YP_003824085.1 KEGG: cbe:Cbei_4170 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003824086.1 KEGG: cbe:Cbei_4171 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003824087.1 KEGG: cbe:Cbei_4172 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_003824088.1 KEGG: cbe:Cbei_4173 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003824089.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: csc:Csac_1031 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase YP_003824090.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: cac:CAC3642 oligopeptide ABC transporter, ATPase component; SMART: AAA ATPase YP_003824091.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lmo:lmo0137 hypothetical protein YP_003824092.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbb:CLD_3342 oligopeptide ABC transporter, permease protein YP_003824093.1 PFAM: extracellular solute-binding protein family 5; KEGG: pjd:Pjdr2_0265 extracellular solute-binding protein family 5 YP_003824094.1 PFAM: MgtC/SapB transporter; KEGG: llk:LLKF_1771 cation transport ATPase, MgtC/SapB family YP_003824095.1 KEGG: str:Sterm_4017 myo-inositol catabolism IolB domain protein YP_003824096.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: str:Sterm_4014 oxidoreductase domain protein YP_003824097.1 KEGG: cpf:CPF_0086 myo-inositol catabolism protein IolE; PFAM: Xylose isomerase domain protein TIM barrel YP_003824098.1 PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: cpf:CPF_0084 myo-inositol catabolism protein IolD YP_003824099.1 KEGG: cpf:CPF_0082 myo-inositol catabolism protein IolC; manually curated; PFAM: PfkB domain protein YP_003824100.1 KEGG: str:Sterm_4016 methylmalonate-semialdehyde dehydrogenase; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase YP_003824101.1 TIGRFAM: ketose-bisphosphate aldolase; KEGG: cpe:CPE0086 fructose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II YP_003824102.1 KEGG: cpe:CPE0084 transcription repressor of myo-inositol catabolism operon; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_003824103.1 KEGG: ere:EUBREC_1998 hypothetical protein YP_003824104.1 PFAM: beta-lactamase; KEGG: cbl:CLK_0208 beta-lactamase YP_003824105.1 KEGG: ere:EUBREC_0464 two-component system response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003824106.1 KEGG: ere:EUBREC_0465 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003824107.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: amt:Amet_4267 alcohol dehydrogenase YP_003824108.1 KEGG: amt:Amet_0826 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein YP_003824109.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: amt:Amet_4269 PTS system, mannitol-specific IIC subunit YP_003824110.1 KEGG: cbe:Cbei_0524 transcriptional antiterminator, BglG; PFAM: PRD domain protein YP_003824111.1 KEGG: cbe:Cbei_0242 PTS system, mannitol-specific IIC subunit; PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit YP_003824112.1 TIGRFAM: PTS system, mannitol-specific IIC subunit; KEGG: eca:ECA0087 PTS system, mannitol-specific IIABC component; PFAM: phosphotransferase system EIIC; phosphotransferase system lactose/cellobiose-specific IIB subunit YP_003824113.1 TIGRFAM: S-adenosylmethionine synthetase; KEGG: cpy:Cphy_3874 methionine adenosyltransferase; PFAM: S-adenosylmethionine synthetase YP_003824114.1 KEGG: dhd:Dhaf_4884 amino acid carrier protein; TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter YP_003824115.1 KEGG: cai:Caci_0888 hypothetical protein YP_003824116.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_0558 ABC transporter, permease protein YP_003824117.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_0557 ABC transporter, permease protein YP_003824118.1 PFAM: extracellular solute-binding protein family 1; KEGG: cai:Caci_0625 extracellular solute-binding protein family 1 YP_003824119.1 KEGG: pjd:Pjdr2_5566 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003824120.1 KEGG: hypothetical protein YP_003824121.1 KEGG: ere:EUBREC_1949 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_003824122.1 PFAM: aminoglycoside phosphotransferase; KEGG: ere:EUBREC_0139 hypothetical protein YP_003824123.1 KEGG: ere:EUBREC_0139 hypothetical protein YP_003824124.1 KEGG: pjd:Pjdr2_5566 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003824125.1 KEGG: ere:EUBREC_0461 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_003824126.1 KEGG: eel:EUBELI_01924 hypothetical protein YP_003824127.1 KEGG: saq:Sare_1515 triple helix repeat-containing collagen YP_003824128.1 KEGG: cpy:Cphy_0247 hypothetical protein YP_003824129.1 KEGG: ere:EUBREC_0125 F0F1-type ATP synthase epsilon subunit; TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit-like YP_003824130.1 TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: eel:EUBELI_01928 ATP synthase; SMART: AAA ATPase YP_003824131.1 KEGG: cpy:Cphy_3737 ATP synthase F1, gamma subunit; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit YP_003824132.1 KEGG: eel:EUBELI_01930 ATP synthase; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein YP_003824133.1 KEGG: cpy:Cphy_3739 ATP synthase F1, delta subunit; TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit YP_003824134.1 KEGG: eel:EUBELI_01932 hypothetical protein; TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit YP_003824135.1 KEGG: eel:EUBELI_01933 hypothetical protein; TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit YP_003824136.1 KEGG: eel:EUBELI_01934 ATP synthase; TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit YP_003824137.1 KEGG: cpy:Cphy_3743 hypothetical protein YP_003824138.1 KEGG: eel:EUBELI_01936 hypothetical protein YP_003824139.1 PFAM: microcompartments protein; KEGG: cpy:Cphy_1430 microcompartments protein YP_003824140.1 PFAM: Propanediol utilization protein; KEGG: cpy:Cphy_1429 propanediol utilization protein YP_003824141.1 TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: cpy:Cphy_1428 acetaldehyde dehydrogenase (acetylating) YP_003824142.1 PFAM: microcompartments protein; KEGG: cpy:Cphy_1427 microcompartments protein YP_003824143.1 PFAM: Ethanolamine utilisation EutQ family protein; KEGG: cpy:Cphy_1426 ethanolamine utilisation EutQ family protein YP_003824144.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cpy:Cphy_1425 ethanolamine utilization protein EutN/carboxysome structural protein CcmL YP_003824145.1 PFAM: microcompartments protein; KEGG: cpy:Cphy_1424 microcompartments protein YP_003824146.1 TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: cpy:Cphy_1423 ethanolamine utilization protein EutJ family protein YP_003824147.1 KEGG: cpy:Cphy_1422 hypothetical protein YP_003824148.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cpy:Cphy_1421 iron-containing alcohol dehydrogenase YP_003824149.1 KEGG: cpy:Cphy_1420 EutP/PduV family GTP-binding protein YP_003824150.1 PFAM: microcompartments protein; KEGG: cpy:Cphy_1419 microcompartments protein YP_003824151.1 TIGRFAM: glycyl-radical enzyme activating protein family; KEGG: cpy:Cphy_1418 glycyl-radical activating family protein; PFAM: Radical SAM domain protein YP_003824152.1 PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; KEGG: cpy:Cphy_1417 formate C-acetyltransferase YP_003824153.1 KEGG: cpy:Cphy_1416 aldehyde dehydrogenase family protein YP_003824154.1 PFAM: microcompartments protein; KEGG: cpy:Cphy_1415 microcompartments protein YP_003824155.1 PFAM: microcompartments protein; KEGG: cpy:Cphy_1414 microcompartments protein YP_003824156.1 KEGG: cpy:Cphy_1413 hypothetical protein YP_003824157.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cpy:Cphy_1412 membrane spanning protein YP_003824158.1 PFAM: microcompartments protein; KEGG: cpy:Cphy_1411 microcompartments protein YP_003824159.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cpy:Cphy_1412 membrane spanning protein YP_003824160.1 KEGG: cpy:Cphy_1410 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR YP_003824161.1 KEGG: emi:Emin_0496 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain YP_003824162.1 KEGG: aba:Acid345_0704 twitching motility protein YP_003824163.1 TIGRFAM: YhgE/Pip N-terminal domain protein; YhgE/Pip C-terminal domain protein; KEGG: cbl:CLK_2313 phage infection protein YP_003824164.1 TIGRFAM: deoxyribose-phosphate aldolase; KEGG: str:Sterm_3408 deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_003824165.1 PFAM: sugar isomerase (SIS); KEGG: fnu:FN0628 glucosamine--fructose-6-phosphate aminotransferase [isomerizing] YP_003824166.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; KEGG: cbe:Cbei_2908 N-acetylgalactosamine-specific PTS system transporter subunit IIB; PFAM: PTS system sorbose subfamily IIB component YP_003824167.1 PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: str:Sterm_3398 phosphotransferase system PTS sorbose-specific IIC subunit YP_003824168.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: cbe:Cbei_2906 N-acetylgalactosamine-specific PTS system transporter subunit IID YP_003824169.1 PFAM: sugar isomerase (SIS); KEGG: cbe:Cbei_0959 sugar isomerase (SIS) YP_003824170.1 PFAM: PfkB domain protein; KEGG: cbe:Cbei_0960 ribokinase-like domain-containing protein YP_003824171.1 KEGG: yurK; GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003824172.1 PFAM: PTS system fructose subfamily IIA component; KEGG: str:Sterm_3396 PTS system fructose subfamily IIA component YP_003824173.1 KEGG: fma:FMG_1000 hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003824174.1 KEGG: dae:Dtox_1428 hypothetical protein YP_003824175.1 PFAM: protein of unknown function DUF262; KEGG: cyh:Cyan8802_2610 protein of unknown function DUF262 YP_003824176.1 KEGG: sgo:SGO_0845 cell wall binding protein YP_003824177.1 SMART: AAA ATPase; KEGG: clo:HMPREF0868_1213 FtsK/SpoIIIE family protein YP_003824178.1 KEGG: ehi:EHI_168860 hypothetical protein YP_003824179.1 KEGG: min:Minf_1853 flagellar motor protein YP_003824180.1 PFAM: integrase family protein; KEGG: cpy:Cphy_3145 integrase family protein YP_003824181.1 KEGG: ere:EUBREC_1220 rhodanese-related sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003824182.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dhd:Dhaf_2452 signal transduction histidine kinase, LytS; SMART: GGDEF domain containing protein YP_003824183.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fnu:FN0974 lactoylglutathione lyase YP_003824184.1 KEGG: cpy:Cphy_0164 beta-lactamase domain-containing protein YP_003824185.1 PFAM: Domain of unknown function DUF1848; KEGG: cpy:Cphy_1906 hypothetical protein YP_003824186.1 PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdl:CDR20291_0757 rubredoxin oxidoreductase (desulfoferrodoxin) YP_003824187.1 KEGG: rxy:Rxyl_0630 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003824188.1 KEGG: act:ACLA_038540 glutamate carboxypeptidase Tre2 YP_003824189.1 KEGG: bca:BCE_1903 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003824190.1 KEGG: cbk:CLL_A3150 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003824191.1 KEGG: eel:EUBELI_01867 glycoside hydrolase family 13 candidate A-glycosidase (amylase-related); PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; SMART: alpha amylase catalytic sub domain YP_003824192.1 SMART: AAA ATPase; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: eel:EUBELI_01868 microtubule-severing ATPase; PFAM: ATPase AAA; peptidase M41 YP_003824193.1 TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: cpy:Cphy_0140 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003824194.1 KEGG: cpy:Cphy_0139 tRNA(Ile)-lysidine synthetase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein YP_003824195.1 PFAM: Stage II sporulation E family protein; KEGG: cpy:Cphy_0138 protein serine/threonine phosphatase; SMART: protein phosphatase 2C domain protein YP_003824196.1 PFAM: Septum formation initiator; KEGG: eel:EUBELI_01872 hypothetical protein YP_003824197.1 PFAM: Spore cortex biosynthesis protein, YabQ-like; KEGG: cce:Ccel_3082 hypothetical protein YP_003824198.1 KEGG: cpy:Cphy_0135 sporulation protein YabP; TIGRFAM: sporulation protein YabP; PFAM: YabP family protein YP_003824199.1 KEGG: cpy:Cphy_0134 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003824200.1 KEGG: eel:EUBELI_01386 DNA-binding protein HU-beta; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_003824201.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: fsu:Fisuc_0476 MazG family protein YP_003824202.1 KEGG: lip:LI0142 hypothetical protein YP_003824203.1 KEGG: mmu:11568 AE binding protein 1 YP_003824204.1 KEGG: cpy:Cphy_0127 AbrB family transcriptional regulator; TIGRFAM: stage V sporulation protein T; transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein YP_003824206.1 TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase; helicase domain protein; TRCF domain protein; KEGG: cpy:Cphy_0112 transcription-repair coupling factor; SMART: DEAD-like helicase ; helicase domain protein YP_003824207.1 TIGRFAM: peptidyl-tRNA hydrolase; KEGG: cpy:Cphy_0111 aminoacyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase YP_003824208.1 PFAM: Integrase catalytic region; KEGG: pmr:PMI3146 integrase YP_003824209.1 KEGG: cce:Ccel_0990 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003824210.1 PFAM: extracellular solute-binding protein family 1; KEGG: bcv:Bcav_2977 extracellular solute-binding protein family 1 YP_003824211.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcv:Bcav_2978 binding-protein-dependent transport systems inner membrane component YP_003824212.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcv:Bcav_2979 binding-protein-dependent transport systems inner membrane component YP_003824213.1 KEGG: gym:GYMC10_4664 hypothetical protein YP_003824214.1 KEGG: csc:Csac_1022 FAD dependent oxidoreductase YP_003824215.1 KEGG: cac:CAC2244 hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_003824216.1 KEGG: cpy:Cphy_3381 xanthine phosphoribosyltransferase; TIGRFAM: xanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003824217.1 KEGG: cpy:Cphy_0204 peptidylprolyl isomerase FKBP-type; TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein YP_003824218.1 PFAM: peptidase M18 aminopeptidase I; KEGG: cth:Cthe_0726 aminopeptidase 1 YP_003824219.1 KEGG: ere:EUBREC_1709 D-tyrosyl-tRNA deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_003824220.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cpy:Cphy_2884 glycerophosphoryl diester phosphodiesterase YP_003824221.1 PFAM: RelA/SpoT domain protein; KEGG: ere:EUBREC_1062 GTP pyrophosphokinase YP_003824222.1 PFAM: RNA binding S1 domain protein; KEGG: cpy:Cphy_0021 RNA-binding S1 domain-containing protein YP_003824223.1 KEGG: cpy:Cphy_0627 phosphotransferase domain-containing protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein YP_003824224.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cbe:Cbei_2867 LysR family transcriptional regulator YP_003824225.1 PFAM: ferric-uptake regulator; KEGG: cpy:Cphy_3815 ferric uptake regulator family protein YP_003824226.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cpy:Cphy_3816 rubrerythrin YP_003824227.1 PFAM: Rubrerythrin; KEGG: cdl:CDR20291_0755 rubrerythrin YP_003824228.1 KEGG: cbe:Cbei_4954 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase YP_003824229.1 PFAM: glycerol-3-phosphate responsive antiterminator; KEGG: cpy:Cphy_0319 glycerol-3-phosphate responsive antiterminator, GlpP YP_003824230.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cno:NT01CX_0196 glycerophosphoryl diester phosphodiesterase family protein YP_003824231.1 PFAM: protein of unknown function DUF1667; KEGG: cno:NT01CX_0610 hypothetical protein YP_003824232.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC02435 sarcosine oxidase alpha subunit YP_003824233.1 PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ere:EUBREC_2588 FAD-dependent oxidoreductase YP_003824234.1 PFAM: MgtC/SapB transporter; KEGG: cdl:CDR20291_1272 hypothetical protein YP_003824235.1 KEGG: cpy:Cphy_0041 glycerol kinase; TIGRFAM: glycerol kinase; PFAM: Carbohydrate kinase, FGGY-like YP_003824236.1 KEGG: ljf:FI9785_1250 cation-transporting ATPase PacL; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase YP_003824237.1 TIGRFAM: adenine deaminase; KEGG: drm:Dred_2771 adenine deaminase; PFAM: amidohydrolase YP_003824238.1 KEGG: tpd:Teth39_1718 xanthine/uracil/vitamin C permease; manually curated; PFAM: Xanthine/uracil/vitamin C permease YP_003824239.1 KEGG: str:Sterm_0942 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SMART: regulatory protein GntR HTH YP_003824240.1 KEGG: cbe:Cbei_1237 S-ribosylhomocysteinase; PFAM: LuxS protein YP_003824241.1 KEGG: dhd:Dhaf_4626 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003824242.1 TIGRFAM: potassium-transporting ATPase, C subunit; KEGG: lmh:LMHCC_2856 K+-transporting ATPase, C subunit; PFAM: K transporting ATPase KdpC subunit YP_003824243.1 KEGG: lsg:lse_2587 K+-transporting ATPase B chain; TIGRFAM: K+-transporting ATPase, B subunit; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase YP_003824244.1 TIGRFAM: potassium-transporting ATPase, A subunit; KEGG: lmy:LM5923_0178 potassium-transporting ATPase subunit A; PFAM: K transporting ATPase A subunit YP_003824245.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: ere:EUBREC_2459 transketolase, C-terminal subunit YP_003824246.1 PFAM: Transketolase domain protein; KEGG: ere:EUBREC_0331 transketolase domain protein YP_003824247.1 KEGG: ssb:SSUBM407_0174 sugar-specific permease, SgaT/UlaA family YP_003824248.1 PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: bld:BLi00493 hypothetical protein YP_003824249.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; PRD domain protein; KEGG: bld:BLi00492 hypothetical protein YP_003824250.1 KEGG: eel:EUBELI_01311 glycoside hydrolase family 13 candidate A-glycosidase (amylase-related); PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain YP_003824251.1 KEGG: ere:EUBREC_1063 ABC transporter-like protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003824252.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; KEGG: cac:CAC0222 exodeoxyribonuclease (ExoA); PFAM: Endonuclease/exonuclease/phosphatase YP_003824253.1 PFAM: Cobalt transport protein CbiN; KEGG: cbt:CLH_0615 cobalt/cobalamin transport protein CbiN YP_003824254.1 KEGG: cbe:Cbei_3710 cobalamin biosynthesis protein CbiM; TIGRFAM: cobalamin biosynthesis protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein YP_003824255.1 TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: cpy:Cphy_1384 ABC transporter related; SMART: AAA ATPase YP_003824256.1 KEGG: cbk:CLL_A0652 cobalt ABC transporter, permease protein CbiQ; TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein YP_003824257.1 KEGG: cpy:Cphy_3372 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003824258.1 KEGG: dwi:Dwil_GK12566 GK12566 gene product from transcript GK12566-RA YP_003824259.1 PFAM: protein of unknown function DUF1696; KEGG: cce:Ccel_3190 protein of unknown function DUF1696 YP_003824260.1 KEGG: cbe:Cbei_0809 TspO and MBR like protein; manually curated; PFAM: TspO/MBR family protein YP_003824261.1 KEGG: eel:EUBELI_01396 polar amino acid transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003824262.1 KEGG: ele:Elen_0662 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003824263.1 KEGG: mru:mru_1777 amino acid ABC transporter substrate-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor YP_003824264.1 KEGG: dre:58137 cugbp, Elav-like family member 1 YP_003824265.1 KEGG: ctc:CTC00927 dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase YP_003824266.1 KEGG: ere:EUBREC_1064 hypothetical protein YP_003824267.1 PFAM: protein of unknown function DUF1212; KEGG: ere:EUBREC_1065 hypothetical protein YP_003824268.1 KEGG: cpy:Cphy_0467 hypothetical protein YP_003824269.1 KEGG: aga:AgaP_AGAP008244 AGAP008244-PA YP_003824270.1 PFAM: nitroreductase; KEGG: cbe:Cbei_2334 nitroreductase YP_003824271.1 KEGG: cac:CAC3359 nitroreductase family protein YP_003824272.1 KEGG: ere:EUBREC_0201 hypothetical protein YP_003824273.1 PFAM: protein of unknown function DUF378; KEGG: cbi:CLJ_B0491 hypothetical protein YP_003824274.1 PFAM: ATPase associated with various cellular activities AAA_5; KEGG: cpy:Cphy_1222 AAA ATPase YP_003824275.1 KEGG: ere:EUBREC_1241 hypothetical protein YP_003824276.1 KEGG: cpy:Cphy_1220 hypothetical protein YP_003824277.1 KEGG: cbt:CLH_1705 protein containing cell adhesion domain; PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein YP_003824278.1 KEGG: cbt:CLH_1705 protein containing cell adhesion domain YP_003824279.1 KEGG: cdl:CDR20291_1624 hypothetical protein YP_003824280.1 KEGG: cpy:Cphy_1652 peptidoglycan-binding LysM; PFAM: glycoside hydrolase family 18; Peptidoglycan-binding lysin domain; SMART: chitinase II; Peptidoglycan-binding LysM YP_003824281.1 KEGG: cpy:Cphy_1652 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; glycoside hydrolase family 18; SMART: Peptidoglycan-binding LysM; chitinase II YP_003824282.1 KEGG: seu:SEQ_1730 phage membrane protein YP_003824283.1 KEGG: ere:EUBREC_0022 DNA-binding response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003824284.1 KEGG: ere:EUBREC_0023 hypothetical protein; PFAM: histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase A domain protein; ATP-binding region ATPase domain protein YP_003824285.1 KEGG: afn:Acfer_0677 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003824286.1 PFAM: Peptidoglycan-binding domain 1 protein; NLP/P60 protein; KEGG: cpy:Cphy_1886 peptidoglycan binding domain-containing protein YP_003824287.1 PFAM: zinc/iron permease; KEGG: ele:Elen_2912 zinc/iron permease YP_003824288.1 KEGG: ere:EUBREC_2896 F0F1-type ATP synthase epsilon subunit; TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit-like YP_003824289.1 TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: eel:EUBELI_01480 F-type H+-transporting ATPase beta chain; SMART: AAA ATPase YP_003824290.1 KEGG: eel:EUBELI_01481 Na+-transporting two-sector ATPase; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit YP_003824291.1 KEGG: eel:EUBELI_01482 ATP synthase; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein YP_003824292.1 KEGG: ere:EUBREC_2900 hypothetical protein; TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit YP_003824293.1 KEGG: cce:Ccel_0268 ATP synthase F0, B subunit; TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit YP_003824294.1 KEGG: ere:EUBREC_2902 hypothetical protein; TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit YP_003824295.1 KEGG: eel:EUBELI_01486 F-type H+-transporting ATPase A chain; TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit YP_003824296.1 PFAM: alpha/beta hydrolase fold; KEGG: apr:Apre_1713 alpha/beta hydrolase fold protein YP_003824297.1 PFAM: Heparinase II/III family protein; KEGG: gym:GYMC10_2636 heparinase II/III family protein YP_003824298.1 PFAM: ABC transporter; KEGG: dhd:Dhaf_0044 ABC transporter YP_003824299.1 KEGG: dhd:Dhaf_0043 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003824300.1 PFAM: periplasmic solute binding protein; KEGG: dhd:Dhaf_0042 periplasmic solute binding protein YP_003824301.1 PFAM: ferric-uptake regulator; KEGG: ccu:Ccur_04330 Fe2+/Zn2+ uptake regulation protein YP_003824302.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: cpy:Cphy_2766 MATE efflux family protein YP_003824303.1 KEGG: tte:TTE0191 ATPase; PFAM: sigma-54 factor interaction domain-containing protein; PRD domain protein; SMART: AAA ATPase YP_003824304.1 PFAM: sugar isomerase (SIS); KEGG: kpu:KP1_1480 phosphosugar isomerases YP_003824305.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: cbe:Cbei_4557 PTS system mannose/fructose/sorbose family IID component YP_003824306.1 PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: ppe:PEPE_0197 mannose-specific PTS system component IIC YP_003824307.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: cbe:Cbei_4559 PTS system sorbose subfamily IIB component YP_003824308.1 PFAM: PTS system fructose subfamily IIA component; KEGG: cbe:Cbei_0955 PTS system fructose subfamily IIA component YP_003824310.1 KEGG: cpy:Cphy_3917 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase YP_003824311.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sss:SSUSC84_0044 acetyltransferase (GNAT) family protein YP_003824312.1 KEGG: cpy:Cphy_3129 hypothetical protein YP_003824313.1 KEGG: nml:Namu_5141 hypothetical protein YP_003824314.1 KEGG: ptm:PTMB.446c hypothetical protein YP_003824315.1 KEGG: ckr:CKR_2548 hypothetical protein YP_003824316.1 KEGG: bbe:BBR47_25740 hypothetical protein; PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein YP_003824317.1 KEGG: tva:TVAG_386850 hypothetical protein YP_003824318.1 PFAM: H+transporting two-sector ATPase C (AC39) subunit; KEGG: cpy:Cphy_3447 H+transporting two-sector ATPase C (AC39) subunit YP_003824319.1 PFAM: V-type ATPase 116 kDa subunit; KEGG: cpy:Cphy_3446 V-type ATPase 116 kDa subunit YP_003824320.1 PFAM: H+transporting two-sector ATPase C subunit; KEGG: cpy:Cphy_3445 H+transporting two-sector ATPase C subunit YP_003824321.1 PFAM: Vacuolar H+transporting two-sector ATPase F subunit; KEGG: cpy:Cphy_3444 vacuolar H+transporting two-sector ATPase F subunit YP_003824322.1 KEGG: cpy:Cphy_3443 hypothetical protein YP_003824323.1 KEGG: cpy:Cphy_3442 V-type ATP synthase subunit A; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein YP_003824324.1 PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: cpy:Cphy_3441 V-type ATP synthase subunit B YP_003824325.1 KEGG: cpy:Cphy_3440 V-type ATPase, D subunit; TIGRFAM: V-type ATPase, D subunit; PFAM: H+transporting two-sector ATPase D subunit YP_003824326.1 KEGG: cbk:CLL_A3537 RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein YP_003824327.1 KEGG: ctc:CTC00617 hypothetical protein YP_003824328.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ara:Arad_14120 myo-inositol catabolism protein YP_003824329.1 KEGG: tga:TGAM_1014 ABC-type transport system, ATPase component, Fe3+ transporter (FbpC/AfuC); PFAM: ABC transporter related; SMART: AAA ATPase YP_003824330.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gym:GYMC10_1098 binding-protein-dependent transport systems inner membrane component YP_003824331.1 PFAM: extracellular solute-binding protein family 1; KEGG: sth:STH1157 iron ABC transporter substrate-binding protein YP_003824332.1 PFAM: glycoside hydrolase family 4; KEGG: str:Sterm_4107 glycoside hydrolase family 4 YP_003824333.1 PFAM: PfkB domain protein; KEGG: sus:Acid_1926 ribokinase-like domain-containing protein YP_003824334.1 KEGG: ckr:CKR_3314 hypothetical protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003824335.1 KEGG: ere:EUBREC_0489 alpha-galactosidase; PFAM: glycoside hydrolase clan GH-D YP_003824336.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tex:Teth514_1093 binding-protein-dependent transport systems inner membrane component YP_003824337.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tex:Teth514_1092 binding-protein-dependent transport systems inner membrane component YP_003824338.1 PFAM: extracellular solute-binding protein family 1; KEGG: tpd:Teth39_0607 extracellular solute-binding protein YP_003824339.1 KEGG: cpy:Cphy_2008 multi-sensor signal transduction histidine kinase; PFAM: histidine kinase internal region; histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein YP_003824340.1 KEGG: pjd:Pjdr2_3705 two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; Helix-turn-helix, AraC domain YP_003824341.1 PFAM: regulatory protein TetR; KEGG: dae:Dtox_0536 transcriptional regulator, TetR family YP_003824342.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dsy:DSY2123 phosphoenolpyruvate synthase YP_003824343.1 KEGG: cce:Ccel_2159 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003824344.1 KEGG: cce:Ccel_2158 ABC-2 type transport system permease protein YP_003824345.1 KEGG: cce:Ccel_2157 hypothetical protein YP_003824346.1 KEGG: dhd:Dhaf_0096 protein of unknown function DUF1121 YP_003824347.1 KEGG: eel:EUBELI_01145 solute:Na+ symporter, SSS family; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_003824348.1 PFAM: regulatory protein TetR; KEGG: cno:NT01CX_0025 TetR/AcrR family transcriptional regulator YP_003824349.1 PFAM: Citrate synthase; KEGG: eel:EUBELI_20588 citrate synthase YP_003824350.1 PFAM: protein of unknown function UPF0126; KEGG: cpy:Cphy_0998 hypothetical protein YP_003824351.1 KEGG: aoe:Clos_0551 hypothetical protein; TIGRFAM: integral membrane protein TIGR01906; PFAM: Integral membrane protein 1906 YP_003824352.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: cpy:Cphy_3929 serine-type D-Ala-D-Ala carboxypeptidase YP_003824353.1 KEGG: cpy:Cphy_0743 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003824354.1 KEGG: cpy:Cphy_0742 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003824355.1 KEGG: eel:EUBELI_02047 sporulation inhibitor KapD; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_003824356.1 KEGG: gwc:GWCH70_3435 hypothetical protein YP_003824357.1 KEGG: cbi:CLJ_B2502 hypothetical membrane spanning protein YP_003824358.1 PFAM: cell wall binding repeat-containing protein; KEGG: ccu:Ccur_08300 glycosyl hydrolase family 25 YP_003824359.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC0427 glycerol-3-phosphate ABC-transporter, permease component YP_003824360.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC0428 sugar permease YP_003824361.1 PFAM: extracellular solute-binding protein family 1; KEGG: cac:CAC0429 glicerol-3-phosphate ABC-transporter, periplasmic component YP_003824362.1 PFAM: glucose-inhibited division protein A; KEGG: tte:TTE2589 hypothetical protein YP_003824363.1 KEGG: apv:Apar_0162 hypothetical protein YP_003824364.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: apv:Apar_0161 hydantoinase/oxoprolinase YP_003824365.1 PFAM: C4-dicarboxylate anaerobic carrier-like; KEGG: apv:Apar_0160 hypothetical protein YP_003824366.1 KEGG: tex:Teth514_0421 hypothetical protein YP_003824367.1 KEGG: apv:Apar_0159 hypothetical protein YP_003824368.1 KEGG: cbt:CLH_2362 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003824369.1 PFAM: alpha/beta hydrolase fold; KEGG: cbl:CLK_0246 non-haem haloperoxidase family protein YP_003824370.1 KEGG: cpy:Cphy_0780 hypothetical protein YP_003824371.1 KEGG: cpy:Cphy_3169 hypothetical protein YP_003824372.1 manually curated; KEGG: eel:EUBELI_20456 hypothetical protein YP_003824373.1 PFAM: protein of unknown function DUF1312; KEGG: cpy:Cphy_3079 hypothetical protein YP_003824374.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cce:Ccel_1112 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003824375.1 PFAM: Polyprenyl synthetase; KEGG: tex:Teth514_0672 polyprenyl synthetase YP_003824376.1 KEGG: cce:Ccel_1116 hypothetical protein YP_003824377.1 PFAM: ApbE family lipoprotein; KEGG: cce:Ccel_1117 ApbE family lipoprotein YP_003824378.1 KEGG: sfu:Sfum_0287 UbiD family decarboxylase; TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein YP_003824379.1 KEGG: gym:GYMC10_0625 4-hydroxybenzoate polyprenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase YP_003824380.1 KEGG: glo:Glov_0398 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein YP_003824381.1 KEGG: pgn:PGN_0857 hypothetical protein; PFAM: NLPA lipoprotein; SMART: extracellular solute-binding protein family 3 YP_003824382.1 KEGG: pgn:PGN_0858 probable ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003824383.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pgi:PG1381 ABC transporter, permease protein YP_003824384.1 KEGG: cdl:CDR20291_0549 ferredoxin YP_003824385.1 KEGG: cdf:CD0628 hypothetical protein YP_003824386.1 KEGG: cac:CA_P0031 transcriptional activator HlyU; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003824387.1 PFAM: extracellular solute-binding protein family 1; KEGG: cth:Cthe_1588 extracellular solute-binding protein YP_003824388.1 KEGG: cth:Cthe_1587 ABC transporter; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_003824389.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_1586 binding-protein-dependent transport systems inner membrane component YP_003824390.1 PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; KEGG: cth:Cthe_1585 signal transduction histidine kinase, LytS; SMART: ATP-binding region ATPase domain protein YP_003824391.1 KEGG: cth:Cthe_1584 two component AraC family transcriptional regulator; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; response regulator receiver YP_003824392.1 KEGG: lic:LIC11302 phosphoglycolate phosphatase; manually curated; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003824393.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: bcl:ABC4073 PTS system, mannose-specific enzyme II, D component YP_003824394.1 PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: efa:EF1953 PTS system, IIC component YP_003824395.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: str:Sterm_3475 PTS system sorbose subfamily IIB component YP_003824396.1 PFAM: PTS system fructose subfamily IIA component; KEGG: cbe:Cbei_0955 PTS system fructose subfamily IIA component YP_003824397.1 PFAM: sugar isomerase (SIS); KEGG: cbe:Cbei_0959 sugar isomerase (SIS) YP_003824398.1 KEGG: cbt:CLH_3253 transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003824399.1 KEGG: ddr:Deide_2p00300 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003824400.1 KEGG: pfh:PFHG_00230 conserved hypothetical protein YP_003824401.1 KEGG: cpy:Cphy_3931 hypothetical protein YP_003824402.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: mru:mru_1761 glutamate dehydrogenase GdhA YP_003824403.1 KEGG: bca:BCE_0961 cell wall anchor domain-containing protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Cna B domain protein YP_003824404.1 PFAM: BioY protein; KEGG: cno:NT01CX_0019 BioY family protein YP_003824405.1 PFAM: Zinc ribbon NADH pyrophosphatase; NUDIX hydrolase; KEGG: cpy:Cphy_1137 NUDIX hydrolase YP_003824406.1 PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: cpy:Cphy_3925 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_003824407.1 PFAM: Fumble domain protein; KEGG: pdi:BDI_2301 pantothenate kinase YP_003824408.1 KEGG: cpy:Cphy_3933 hypothetical protein YP_003824409.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cpy:Cphy_3934 ParB-like partition protein; SMART: ParB domain protein nuclease YP_003824410.1 KEGG: eel:EUBELI_02059 chromosome partitioning protein YP_003824411.1 KEGG: ere:EUBREC_3704 alpha/beta hydrolase fold protein YP_003824412.1 KEGG: ere:EUBREC_3705 glucose-inhibited division protein B; TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein YP_003824413.1 KEGG: cpy:Cphy_3940 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A YP_003824414.1 KEGG: ere:EUBREC_3707 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related YP_003824415.1 KEGG: ere:EUBREC_3708 RNA-binding protein Jag, SpoIIIJ-associated; PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein YP_003824416.1 KEGG: eel:EUBELI_02067 preprotein translocase YidC subunit; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; PFAM: 60 kDa inner membrane insertion protein YP_003824417.1 KEGG: cce:Ccel_3489 protein of unknown function DUF37; manually curated; PFAM: protein of unknown function DUF37 YP_003824418.1 KEGG: ere:EUBREC_3711 ribonuclease P; TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein YP_003824419.1 manually curated; TIGRFAM: ribosomal protein L34; KEGG: eel:EUBELI_02070 hypothetical protein; PFAM: ribosomal protein L34 YP_003824420.1 KEGG: efa:EF2657 hypothetical protein