-- dump date 20140619_045008 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 357809000001 SEQ_END SEQ_END NC_010001.1 4847594 4847594 DR NC_010001.1; contig end 4847594..4847594 Clostridium phytofermentans ISDg YP_001557131.1 CDS Cphy_0001 NC_010001.1 75 1436 D KEGG: cbf:CLI_0001 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase; chromosomal replication initiator protein DnaA 75..1436 Clostridium phytofermentans ISDg 5742482 YP_001557132.1 CDS Cphy_0002 NC_010001.1 1849 2961 D KEGG: cth:Cthe_2372 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 1849..2961 Clostridium phytofermentans ISDg 5744062 YP_001557133.1 CDS Cphy_0003 NC_010001.1 3099 3314 D PFAM: RNA-binding S4 domain protein; KEGG: art:Arth_1328 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 3099..3314 Clostridium phytofermentans ISDg 5744063 YP_001557134.1 CDS Cphy_0004 NC_010001.1 3870 4952 D TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: cpr:CPR_0004 DNA replication and repair protein RecF; DNA replication and repair protein RecF 3870..4952 Clostridium phytofermentans ISDg 5744064 YP_001557135.1 CDS Cphy_0005 NC_010001.1 4986 6914 D KEGG: cno:NT01CX_0862 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 4986..6914 Clostridium phytofermentans ISDg 5744065 YP_001557136.1 CDS Cphy_0006 NC_010001.1 6932 9631 D KEGG: amt:Amet_0007 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit A 6932..9631 Clostridium phytofermentans ISDg 5744066 YP_001557137.1 CDS Cphy_0007 NC_010001.1 9911 10753 D KEGG: cth:Cthe_3090 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 9911..10753 Clostridium phytofermentans ISDg 5741484 YP_001557138.1 CDS Cphy_0008 NC_010001.1 10807 11355 D TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: amt:Amet_3412 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta 10807..11355 Clostridium phytofermentans ISDg 5741485 YP_001557139.1 CDS Cphy_0009 NC_010001.1 11434 11871 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: csc:Csac_2255 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 11434..11871 Clostridium phytofermentans ISDg 5741486 YP_001557140.1 CDS Cphy_0010 NC_010001.1 12344 13630 D KEGG: cbe:Cbei_0766 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 12344..13630 Clostridium phytofermentans ISDg 5741487 YP_001557141.1 CDS Cphy_0011 NC_010001.1 13672 14604 D TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cbe:Cbei_4356 cysteine synthase A; cysteine synthase A 13672..14604 Clostridium phytofermentans ISDg 5741488 YP_001557142.1 CDS Cphy_0012 NC_010001.1 22337 23074 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 22337..23074 Clostridium phytofermentans ISDg 5744932 YP_001557143.1 CDS Cphy_0013 NC_010001.1 23329 23982 D KEGG: cbe:Cbei_4645 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase 23329..23982 Clostridium phytofermentans ISDg 5744933 YP_001557144.1 CDS Cphy_0014 NC_010001.1 24186 26168 D TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: ctc:CTC01332 transketolase; transketolase 24186..26168 Clostridium phytofermentans ISDg 5744934 YP_001557145.1 CDS Cphy_0015 NC_010001.1 26532 27218 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amt:Amet_1506 two component transcriptional regulator, winged helix family; two component transcriptional regulator 26532..27218 Clostridium phytofermentans ISDg 5744935 YP_001557146.1 CDS Cphy_0016 NC_010001.1 27208 28647 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: amt:Amet_1507 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 27208..28647 Clostridium phytofermentans ISDg 5744936 YP_001557147.1 CDS Cphy_0017 NC_010001.1 29061 30842 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cpe:CPE1525 probable ABC transporter; ABC transporter complement(29061..30842) Clostridium phytofermentans ISDg 5744937 YP_001557148.1 CDS Cphy_0018 NC_010001.1 30987 32732 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_2793 ABC transporter related; ABC transporter complement(30987..32732) Clostridium phytofermentans ISDg 5744938 YP_001557149.1 CDS Cphy_0019 NC_010001.1 33488 33748 D hypothetical protein 33488..33748 Clostridium phytofermentans ISDg 5744939 YP_001557150.1 CDS Cphy_0020 NC_010001.1 33777 34718 D PFAM: RelA/SpoT domain protein; KEGG: lin:lin0794 hypothetical protein; RelA/SpoT domain-containing protein 33777..34718 Clostridium phytofermentans ISDg 5744940 YP_001557151.1 CDS Cphy_0021 NC_010001.1 34946 35857 R PFAM: RNA binding S1 domain protein; KEGG: cno:NT01CX_1373 RpsA; RNA-binding S1 domain-containing protein complement(34946..35857) Clostridium phytofermentans ISDg 5744941 YP_001557152.1 CDS Cphy_0022 NC_010001.1 36006 36809 D PFAM: NUDIX hydrolase; KEGG: cth:Cthe_3126 NUDIX hydrolase; NUDIX hydrolase 36006..36809 Clostridium phytofermentans ISDg 5744942 YP_001557153.1 CDS Cphy_0023 NC_010001.1 36983 37717 R KEGG: rci:RCIX1087 hypothetical protein; hypothetical protein complement(36983..37717) Clostridium phytofermentans ISDg 5744943 YP_001557154.1 CDS Cphy_0024 NC_010001.1 38095 39390 D catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 2 38095..39390 Clostridium phytofermentans ISDg 5744944 YP_001557155.1 CDS Cphy_0025 NC_010001.1 40543 42537 D TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; tRNA synthetase class I (M); KEGG: cno:NT01CX_0697 methionyl-tRNA synthetase; methionyl-tRNA synthetase 40543..42537 Clostridium phytofermentans ISDg 5744945 YP_001557156.1 CDS Cphy_0026 NC_010001.1 42711 42926 R KEGG: tte:TTE0043 hypothetical protein; hypothetical protein complement(42711..42926) Clostridium phytofermentans ISDg 5744946 YP_001557157.1 CDS Cphy_0027 NC_010001.1 43272 43535 D KEGG: ckl:CKL_3823 hypothetical protein; hypothetical protein 43272..43535 Clostridium phytofermentans ISDg 5744947 YP_001557158.1 CDS Cphy_0029 NC_010001.1 44224 44937 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: btl:BALH_3033 possible UbiE/COQ5 methyltransferase family; methyltransferase type 11 44224..44937 Clostridium phytofermentans ISDg 5744949 YP_001557159.1 CDS Cphy_0030 NC_010001.1 44956 45768 D hypothetical protein 44956..45768 Clostridium phytofermentans ISDg 5744950 YP_001557160.1 CDS Cphy_0031 NC_010001.1 46157 47131 D KEGG: cth:Cthe_1340 hypothetical protein; hypothetical protein 46157..47131 Clostridium phytofermentans ISDg 5744951 YP_001557161.1 CDS Cphy_0032 NC_010001.1 47419 48633 D PFAM: type II secretion system protein E; KEGG: cth:Cthe_1339 type II secretion system protein E; type II secretion system protein E 47419..48633 Clostridium phytofermentans ISDg 5744952 YP_001557162.1 CDS Cphy_0033 NC_010001.1 48724 49467 D KEGG: cth:Cthe_1338 Flp pilus assembly protein TadB-like protein; Flp pilus assembly protein TadB-like protein 48724..49467 Clostridium phytofermentans ISDg 5744953 YP_001557163.1 CDS Cphy_0034 NC_010001.1 49484 50941 D KEGG: cth:Cthe_1337 type II secretion system protein; hypothetical protein 49484..50941 Clostridium phytofermentans ISDg 5744954 YP_001557164.1 CDS Cphy_0035 NC_010001.1 51057 51260 D hypothetical protein 51057..51260 Clostridium phytofermentans ISDg 5744955 YP_001557165.1 CDS Cphy_0036 NC_010001.1 51273 53756 D KEGG: cth:Cthe_1829 chromosome segregation ATPases-like protein; hypothetical protein 51273..53756 Clostridium phytofermentans ISDg 5744956 YP_001557166.1 CDS Cphy_0037 NC_010001.1 53921 54835 D hypothetical protein 53921..54835 Clostridium phytofermentans ISDg 5744957 YP_001557167.1 CDS Cphy_0038 NC_010001.1 54915 55349 D PFAM: peptidase A24A prepilin type IV; KEGG: cth:Cthe_1335 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV 54915..55349 Clostridium phytofermentans ISDg 5744958 YP_001557168.1 CDS Cphy_0039 NC_010001.1 55496 56068 D hypothetical protein 55496..56068 Clostridium phytofermentans ISDg 5744959 YP_001557169.1 CDS Cphy_0040 NC_010001.1 56324 58066 D PFAM: Forkhead-associated protein; KEGG: cth:Cthe_1334 FHA domain containing protein; FHA domain-containing protein 56324..58066 Clostridium phytofermentans ISDg 5744960 YP_001557170.1 CDS Cphy_0041 NC_010001.1 58361 59860 D TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: cbf:CLI_2834 glycerol kinase; glycerol kinase 58361..59860 Clostridium phytofermentans ISDg 5744961 YP_001557171.1 CDS Cphy_0042 NC_010001.1 59873 61063 D PFAM: Rhomboid family protein; KEGG: ctc:CTC00530 conserved membrane protein (rhomboid family); rhomboid family protein 59873..61063 Clostridium phytofermentans ISDg 5744962 YP_001557172.1 CDS Cphy_0043 NC_010001.1 61053 62057 D hypothetical protein 61053..62057 Clostridium phytofermentans ISDg 5744963 YP_001557173.1 CDS Cphy_0044 NC_010001.1 62196 62465 D KEGG: cth:Cthe_2520 hypothetical protein; hypothetical protein 62196..62465 Clostridium phytofermentans ISDg 5744964 YP_001557174.1 CDS Cphy_0045 NC_010001.1 62635 63609 D KEGG: amt:Amet_1444 hypothetical protein; hypothetical protein 62635..63609 Clostridium phytofermentans ISDg 5744965 YP_001557175.1 CDS Cphy_0046 NC_010001.1 63796 65364 D KEGG: cth:Cthe_2144 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 63796..65364 Clostridium phytofermentans ISDg 5744966 YP_001557176.1 CDS Cphy_0047 NC_010001.1 65391 65750 D PFAM: conserved hypothetical protein; KEGG: cbe:Cbei_4950 conserved hypothetical protein 103; hypothetical protein 65391..65750 Clostridium phytofermentans ISDg 5744967 YP_001557177.1 CDS recR NC_010001.1 66208 66804 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 66208..66804 Clostridium phytofermentans ISDg 5744968 YP_001557178.1 CDS Cphy_0049 NC_010001.1 66922 68031 D KEGG: cho:Chro.30409 hypothetical protein; hypothetical protein 66922..68031 Clostridium phytofermentans ISDg 5744969 YP_001557179.1 CDS Cphy_0050 NC_010001.1 68096 68689 R TIGRFAM: sporulation protein YyaC; PFAM: protein of unknown function DUF1256; KEGG: cth:Cthe_2165 protein of unknown function DUF1256; sporulation protein YyaC complement(68096..68689) Clostridium phytofermentans ISDg 5744970 YP_001557180.1 CDS Cphy_0051 NC_010001.1 69062 70372 D PFAM: Peptidoglycan-binding LysM; KEGG: rca:Rcas_0063 peptidoglycan-binding LysM; peptidoglycan-binding LysM 69062..70372 Clostridium phytofermentans ISDg 5744971 YP_001557181.1 CDS Cphy_0052 NC_010001.1 70537 71733 D hypothetical protein 70537..71733 Clostridium phytofermentans ISDg 5744972 YP_001557182.1 CDS Cphy_0053 NC_010001.1 71737 72438 D KEGG: cth:Cthe_2712 hypothetical protein; hypothetical protein 71737..72438 Clostridium phytofermentans ISDg 5744973 YP_001557183.1 CDS Cphy_0054 NC_010001.1 72635 73597 D TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: tde:TDE0157 KHG/KDPG family aldolase/carbohydrate kinase, PfkB family; 2-dehydro-3-deoxyphosphooctonate aldolase 72635..73597 Clostridium phytofermentans ISDg 5744974 YP_001557184.1 CDS Cphy_0055 NC_010001.1 73980 75317 D hypothetical protein 73980..75317 Clostridium phytofermentans ISDg 5744975 YP_001557185.1 CDS Cphy_0056 NC_010001.1 81998 82324 D hypothetical protein 81998..82324 Clostridium phytofermentans ISDg 5744983 YP_001557186.1 CDS Cphy_0057 NC_010001.1 82305 82850 R hypothetical protein complement(82305..82850) Clostridium phytofermentans ISDg 5744984 YP_001557187.1 CDS Cphy_0058 NC_010001.1 83519 85855 D PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: cbh:CLC_2728 xanthine dehydrogenase family protein, molybdopterin-binding subunit; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 83519..85855 Clostridium phytofermentans ISDg 5744985 YP_001557188.1 CDS Cphy_0059 NC_010001.1 85842 86678 D PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: cbf:CLI_2901 xanthine dehydrogenase family protein, FAD-binding subunit; molybdopterin dehydrogenase FAD-binding 85842..86678 Clostridium phytofermentans ISDg 5744986 YP_001557189.1 CDS Cphy_0060 NC_010001.1 86662 87135 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: cbf:CLI_0333 xanthine dehydrogenase family protein, iron-sulfur-binding subunit; 2Fe-2S iron-sulfur cluster binding domain-containing protein 86662..87135 Clostridium phytofermentans ISDg 5744987 YP_001557190.1 CDS Cphy_0061 NC_010001.1 87449 87607 D hypothetical protein 87449..87607 Clostridium phytofermentans ISDg 5744988 YP_001557191.1 CDS Cphy_0062 NC_010001.1 87739 88626 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(87739..88626) Clostridium phytofermentans ISDg 5744989 YP_001557192.1 CDS Cphy_0063 NC_010001.1 89122 89832 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: bvu:BVU_1472 histidinol phosphatase and related hydrolase of the PHP family; phosphotransferase domain-containing protein 89122..89832 Clostridium phytofermentans ISDg 5744990 YP_001557193.1 CDS Cphy_0064 NC_010001.1 89917 90717 R PFAM: helix-turn-helix domain protein; KEGG: cbe:Cbei_3749 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(89917..90717) Clostridium phytofermentans ISDg 5744991 YP_001557194.1 CDS Cphy_0065 NC_010001.1 90930 91751 R PFAM: helix-turn-helix domain protein; KEGG: cpe:CPE0727 hypothetical protein; XRE family transcriptional regulator complement(90930..91751) Clostridium phytofermentans ISDg 5744992 YP_001557195.1 CDS Cphy_0066 NC_010001.1 92474 93670 R hypothetical protein complement(92474..93670) Clostridium phytofermentans ISDg 5744993 YP_001557196.1 CDS Cphy_0067 NC_010001.1 93690 96077 R KEGG: tva:TVAG_032240 flocculin, PROSITE: SER_RICH THR_RICH; hypothetical protein complement(93690..96077) Clostridium phytofermentans ISDg 5744994 YP_001557197.1 CDS Cphy_0068 NC_010001.1 96504 98186 D PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: syn:slr0891 N-acetylmuramoyl-L-alanine amidase; cell wall hydrolase/autolysin 96504..98186 Clostridium phytofermentans ISDg 5744995 YP_001557198.1 CDS Cphy_0069 NC_010001.1 98284 98904 D KEGG: cth:Cthe_0079 hypothetical protein; hypothetical protein 98284..98904 Clostridium phytofermentans ISDg 5744996 YP_001557199.1 CDS Cphy_0070 NC_010001.1 99198 100577 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: cbe:Cbei_0369 peptidase U62, modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase 99198..100577 Clostridium phytofermentans ISDg 5744997 YP_001557200.1 CDS Cphy_0071 NC_010001.1 100774 102117 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: cbe:Cbei_0370 peptidase U62, modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase 100774..102117 Clostridium phytofermentans ISDg 5744998 YP_001557201.1 CDS Cphy_0072 NC_010001.1 102256 103299 D KEGG: sth:STH2880 hypothetical protein; hypothetical protein 102256..103299 Clostridium phytofermentans ISDg 5744999 YP_001557202.1 CDS Cphy_0073 NC_010001.1 103427 103810 D PFAM: regulatory protein GntR HTH; KEGG: cac:CAC0599 transcriptional regulator, GntR family; GntR family transcriptional regulator 103427..103810 Clostridium phytofermentans ISDg 5745000 YP_001557203.1 CDS Cphy_0074 NC_010001.1 103800 104237 D hypothetical protein 103800..104237 Clostridium phytofermentans ISDg 5745001 YP_001557204.1 CDS Cphy_0075 NC_010001.1 104245 105003 D KEGG: efa:EF0300 hypothetical protein; hypothetical protein 104245..105003 Clostridium phytofermentans ISDg 5745002 YP_001557205.1 CDS Cphy_0076 NC_010001.1 105399 106172 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bay:RBAM_030540 multidrug ABC transporter, ATPase component; ABC transporter 105399..106172 Clostridium phytofermentans ISDg 5745003 YP_001557206.1 CDS Cphy_0077 NC_010001.1 106174 107232 D PFAM: ABC-2 type transporter; KEGG: spa:M6_Spy0585 SagH; ABC-2 type transporter 106174..107232 Clostridium phytofermentans ISDg 5745004 YP_001557207.1 CDS Cphy_0078 NC_010001.1 107229 108488 D PFAM: ABC-2 type transporter; KEGG: tte:TTE2529 ABC-type multidrug transport system, permease component; ABC-2 type transporter 107229..108488 Clostridium phytofermentans ISDg 5745005 YP_001557208.1 CDS Cphy_0079 NC_010001.1 108728 109885 D PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: bld:BLi04006 YxjM; integral membrane sensor signal transduction histidine kinase 108728..109885 Clostridium phytofermentans ISDg 5745006 YP_001557209.1 CDS Cphy_0080 NC_010001.1 109893 110531 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bca:BCE_1863 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 109893..110531 Clostridium phytofermentans ISDg 5745007 YP_001557210.1 CDS Cphy_0081 NC_010001.1 110768 111313 D PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cbe:Cbei_2490 rubrerythrin; rubrerythrin 110768..111313 Clostridium phytofermentans ISDg 5745008 YP_001557211.1 CDS Cphy_0082 NC_010001.1 111417 111740 D PFAM: protein of unknown function DUF1540; KEGG: cbe:Cbei_2324 protein of unknown function DUF1540; hypothetical protein 111417..111740 Clostridium phytofermentans ISDg 5745009 YP_001557212.1 CDS Cphy_0083 NC_010001.1 111752 112369 D PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin; flavin reductase domain-containing protein 111752..112369 Clostridium phytofermentans ISDg 5745010 YP_001557213.1 CDS Cphy_0084 NC_010001.1 112892 113914 D KEGG: ppe:PEPE_1302 D-alanine-D-alanine ligase related ATP-grasp enzyme; TIGRFAM: D-alanine--D-alanine ligase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; RimK domain protein ATP-grasp; D-alanine--D-alanine ligase 112892..113914 Clostridium phytofermentans ISDg 5745011 YP_001557214.1 CDS Cphy_0085 NC_010001.1 114069 115049 D hypothetical protein 114069..115049 Clostridium phytofermentans ISDg 5745012 YP_001557215.1 CDS Cphy_0086 NC_010001.1 115163 115348 R KEGG: cbf:CLI_1824 hypothetical protein; hypothetical protein complement(115163..115348) Clostridium phytofermentans ISDg 5745013 YP_001557216.1 CDS Cphy_0087 NC_010001.1 115437 117140 R TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: cbe:Cbei_4110 hydrogenase, Fe-only; hydrogenase, Fe-only complement(115437..117140) Clostridium phytofermentans ISDg 5745014 YP_001557217.1 CDS Cphy_0088 NC_010001.1 117158 119044 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: cbe:Cbei_4111 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) complement(117158..119044) Clostridium phytofermentans ISDg 5745015 YP_001557218.1 CDS Cphy_0089 NC_010001.1 119038 119523 R PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: cbe:Cbei_4112 NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH dehydrogenase (ubiquinone) 24 kDa subunit complement(119038..119523) Clostridium phytofermentans ISDg 5745016 YP_001557219.1 CDS Cphy_0090 NC_010001.1 120033 121487 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; hydrogenase large subunit domain protein; KEGG: cbe:Cbei_0327 ferredoxin hydrogenase; ferredoxin hydrogenase complement(120033..121487) Clostridium phytofermentans ISDg 5745017 YP_001557220.1 CDS Cphy_0091 NC_010001.1 121534 122706 R PFAM: Stage II sporulation E family protein; KEGG: cth:Cthe_0427 serine phosphatase; Ser/Thr phosphatase complement(121534..122706) Clostridium phytofermentans ISDg 5745018 YP_001557221.1 CDS Cphy_0092 NC_010001.1 122755 124488 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; hydrogenase large subunit domain protein; Fe-S cluster domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: tte:TTE0697 ferredoxin 2; PAS/PAC sensor protein complement(122755..124488) Clostridium phytofermentans ISDg 5745019 YP_001557222.1 CDS Cphy_0093 NC_010001.1 124488 124730 R KEGG: cth:Cthe_0425 hypothetical protein; hypothetical protein complement(124488..124730) Clostridium phytofermentans ISDg 5745020 YP_001557223.1 CDS Cphy_0094 NC_010001.1 124837 125703 R PFAM: DegV family protein; KEGG: oih:OB2518 hypothetical protein; DegV family protein complement(124837..125703) Clostridium phytofermentans ISDg 5745021 YP_001557224.1 CDS asnC NC_010001.1 126311 127729 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 126311..127729 Clostridium phytofermentans ISDg 5745022 YP_001557225.1 CDS Cphy_0096 NC_010001.1 127890 128408 R PFAM: protein of unknown function DUF988; KEGG: cbf:CLI_3316 hypothetical protein; hypothetical protein complement(127890..128408) Clostridium phytofermentans ISDg 5745023 YP_001557226.1 CDS Cphy_0097 NC_010001.1 129389 129880 D PFAM: helix-turn-helix domain protein; KEGG: lsl:LSL_1338 DNA-binding protein; XRE family transcriptional regulator 129389..129880 Clostridium phytofermentans ISDg 5745024 YP_001557227.1 CDS Cphy_0098 NC_010001.1 130233 131072 R PFAM: regulatory protein MerR; KEGG: cdf:CD1016 MerR-family transcriptional regulator; MerR family transcriptional regulator complement(130233..131072) Clostridium phytofermentans ISDg 5745025 YP_001557228.1 CDS Cphy_0099 NC_010001.1 131424 133151 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD2818 ABC transporter, ATP-binding/permease; ABC transporter related 131424..133151 Clostridium phytofermentans ISDg 5745026 YP_001557229.1 CDS Cphy_0100 NC_010001.1 133148 134902 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD2817 ABC transporter, ATP-binding/permease; ABC transporter related 133148..134902 Clostridium phytofermentans ISDg 5745027 YP_001557230.1 CDS Cphy_0101 NC_010001.1 135190 136272 R KEGG: cbe:Cbei_4185 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(135190..136272) Clostridium phytofermentans ISDg 5744251 YP_001557231.1 CDS Cphy_0102 NC_010001.1 136465 137550 D PFAM: metallophosphoesterase; KEGG: cth:Cthe_2411 metallophosphoesterase; metallophosphoesterase 136465..137550 Clostridium phytofermentans ISDg 5744252 YP_001557232.1 CDS Cphy_0103 NC_010001.1 137559 139694 D KEGG: lga:LGAS_1449 DNA repair ATPase; hypothetical protein 137559..139694 Clostridium phytofermentans ISDg 5744253 YP_001557233.1 CDS Cphy_0104 NC_010001.1 139859 141028 R Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase complement(139859..141028) Clostridium phytofermentans ISDg 5744254 YP_001557234.1 CDS Cphy_0105 NC_010001.1 141256 142260 R acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC complement(141256..142260) Clostridium phytofermentans ISDg 5744255 YP_001557235.1 CDS Cphy_0106 NC_010001.1 142366 143478 R TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: tte:TTE2692 hypothetical protein; primosome subunit DnaD complement(142366..143478) Clostridium phytofermentans ISDg 5744256 YP_001557236.1 CDS Cphy_0107 NC_010001.1 143877 145286 R TIGRFAM: UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: ckl:CKL_0143 MurC; UDP-N-acetylmuramate--L-alanine ligase complement(143877..145286) Clostridium phytofermentans ISDg 5744257 YP_001557237.1 CDS Cphy_0109 NC_010001.1 146427 146708 D PFAM: SpoVG family protein; KEGG: cbf:CLI_3766 stage V sporulation protein G; SpoVG family protein 146427..146708 Clostridium phytofermentans ISDg 5744259 YP_001557238.1 CDS Cphy_0110 NC_010001.1 147354 148388 D PFAM: polysaccharide deacetylase; KEGG: lwe:lwe0378 polysaccharide deacetylase family protein; polysaccharide deacetylase 147354..148388 Clostridium phytofermentans ISDg 5744260 YP_001557239.1 CDS Cphy_0111 NC_010001.1 148828 149403 D PFAM: peptidyl-tRNA hydrolase; KEGG: cac:CAC3217 stage V sporulation protein C, peptidyl-tRNA hydrolase; aminoacyl-tRNA hydrolase 148828..149403 Clostridium phytofermentans ISDg 5744261 YP_001557240.1 CDS Cphy_0112 NC_010001.1 149444 152983 D KEGG: tte:TTE2565 Transcription-repair coupling factor - superfamily II helicase; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor 149444..152983 Clostridium phytofermentans ISDg 5744262 YP_001557241.1 CDS Cphy_0113 NC_010001.1 153051 154184 D KEGG: cdf:CD3500 foldase lipoprotein (late stage protein export lipoprotein); hypothetical protein 153051..154184 Clostridium phytofermentans ISDg 5744263 YP_001557242.1 CDS Cphy_0114 NC_010001.1 154273 155049 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0410 ABC-type multidrug transport system, ATPase component; ABC transporter 154273..155049 Clostridium phytofermentans ISDg 5744264 YP_001557243.1 CDS Cphy_0115 NC_010001.1 155051 156268 D PFAM: ABC-2 type transporter; KEGG: tte:TTE0411 ABC-type Na+ efflux pump, permease component; ABC-2 type transporter 155051..156268 Clostridium phytofermentans ISDg 5744265 YP_001557244.1 CDS Cphy_0116 NC_010001.1 156368 156760 D PFAM: regulatory protein ArsR; KEGG: fno:Fnod_1613 regulatory protein ArsR; ArsR family transcriptional regulator 156368..156760 Clostridium phytofermentans ISDg 5744266 YP_001557245.1 CDS Cphy_0117 NC_010001.1 156810 157454 D PFAM: regulatory protein GntR HTH; TrkA-C domain protein; KEGG: cbe:Cbei_2872 TrkA-C domain protein; TrkA domain-containing protein 156810..157454 Clostridium phytofermentans ISDg 5744267 YP_001557246.1 CDS Cphy_0118 NC_010001.1 158002 159138 D KEGG: cbe:Cbei_2871 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 158002..159138 Clostridium phytofermentans ISDg 5744268 YP_001557247.1 CDS Cphy_0119 NC_010001.1 159135 160706 D PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cbe:Cbei_2870 substrate-binding region of ABC-type glycine betaine transport system; substrate-binding region of ABC-type glycine betaine transport system 159135..160706 Clostridium phytofermentans ISDg 5744269 YP_001557248.1 CDS Cphy_0120 NC_010001.1 161160 161375 D PFAM: Heavy metal transport/detoxification protein; KEGG: fnu:FN0259 zinc-transporting ATPase; heavy metal transport/detoxification protein 161160..161375 Clostridium phytofermentans ISDg 5744270 YP_001557249.1 CDS Cphy_0121 NC_010001.1 161468 163318 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: btk:BT9727_0506 cation-transporting ATPase, P-type; heavy metal translocating P-type ATPase 161468..163318 Clostridium phytofermentans ISDg 5744271 YP_001557250.1 CDS Cphy_0122 NC_010001.1 163702 164154 D PFAM: NUDIX hydrolase; KEGG: sgo:SGO_0168 hydrolase, NUDIX family; NUDIX hydrolase 163702..164154 Clostridium phytofermentans ISDg 5744272 YP_001557251.1 CDS Cphy_0123 NC_010001.1 164245 165132 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: lac:LBA1598 glycolate oxidase; FMN-dependent alpha-hydroxy acid dehydrogenase 164245..165132 Clostridium phytofermentans ISDg 5744273 YP_001557252.1 CDS Cphy_0124 NC_010001.1 165343 166179 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_5936 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 165343..166179 Clostridium phytofermentans ISDg 5744274 YP_001557253.1 CDS Cphy_0125 NC_010001.1 166419 168566 R PFAM: sulfatase; KEGG: cpf:CPF_1807 hypothetical protein; sulfatase complement(166419..168566) Clostridium phytofermentans ISDg 5744275 YP_001557254.1 CDS Cphy_0126 NC_010001.1 169161 169955 D KEGG: cno:NT01CX_2290 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 169161..169955 Clostridium phytofermentans ISDg 5744276 YP_001557255.1 CDS Cphy_0127 NC_010001.1 170160 170705 D TIGRFAM: transcriptional regulator, AbrB family; stage V sporulation protein T; PFAM: SpoVT/AbrB domain protein; KEGG: cpe:CPE2482 stage V sprulation protein T; AbrB family transcriptional regulator 170160..170705 Clostridium phytofermentans ISDg 5744277 YP_001557256.1 CDS Cphy_0128 NC_010001.1 170950 172281 D PFAM: amino acid permease-associated region; KEGG: sak:SAK_1604 permease, amino acid-polyamine-organocation (APC) family; amino acid permease 170950..172281 Clostridium phytofermentans ISDg 5744278 YP_001557257.1 CDS Cphy_0129 NC_010001.1 172472 172795 D TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: cth:Cthe_1854 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 172472..172795 Clostridium phytofermentans ISDg 5744279 YP_001557258.1 CDS Cphy_0130 NC_010001.1 172888 173892 D PFAM: Patatin; KEGG: aha:AHA_2929 patatin; patatin 172888..173892 Clostridium phytofermentans ISDg 5744280 YP_001557259.1 CDS Cphy_0131 NC_010001.1 174425 176359 D KEGG: dsy:DSY1218 hypothetical protein; hypothetical protein 174425..176359 Clostridium phytofermentans ISDg 5744281 YP_001557260.1 CDS Cphy_0132 NC_010001.1 176379 177092 D TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: chy:CHY_0204 tetrapyrrole methylase family protein/MazG family protein; MazG family protein 176379..177092 Clostridium phytofermentans ISDg 5744282 YP_001557261.1 CDS Cphy_0133 NC_010001.1 177506 177781 D PFAM: histone family protein DNA-binding protein; KEGG: tte:TTE2453 Bacterial nucleoid DNA-binding protein; histone family protein DNA-binding protein 177506..177781 Clostridium phytofermentans ISDg 5744283 YP_001557262.1 CDS Cphy_0134 NC_010001.1 177952 178191 D PFAM: RNA-binding S4 domain protein; KEGG: cpf:CPF_2801 S4 domain protein; RNA-binding S4 domain-containing protein 177952..178191 Clostridium phytofermentans ISDg 5744284 YP_001557263.1 CDS Cphy_0135 NC_010001.1 178292 178576 D TIGRFAM: sporulation protein YabP; PFAM: YabP family protein; KEGG: cth:Cthe_2659 YabP-like protein; sporulation protein YabP 178292..178576 Clostridium phytofermentans ISDg 5744285 YP_001557264.1 CDS Cphy_0136 NC_010001.1 178585 179220 D KEGG: amt:Amet_0170 spore cortex biosynthesis protein YabQ; hypothetical protein 178585..179220 Clostridium phytofermentans ISDg 5744286 YP_001557265.1 CDS Cphy_0137 NC_010001.1 179261 179506 D PFAM: Septum formation initiator; septum formation initiator 179261..179506 Clostridium phytofermentans ISDg 5744287 YP_001557266.1 CDS Cphy_0138 NC_010001.1 180381 181964 D KEGG: cth:Cthe_2681 serine phosphatase; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; protein serine/threonine phosphatase 180381..181964 Clostridium phytofermentans ISDg 5744289 YP_001557267.1 CDS Cphy_0139 NC_010001.1 182200 183678 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: ckl:CKL_0170 TilS; tRNA(Ile)-lysidine synthetase 182200..183678 Clostridium phytofermentans ISDg 5744290 YP_001557268.1 CDS Cphy_0140 NC_010001.1 183710 184234 D KEGG: tte:TTE2394 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 183710..184234 Clostridium phytofermentans ISDg 5744291 YP_001557269.1 CDS Cphy_0141 NC_010001.1 184253 186082 D KEGG: csc:Csac_1210 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 184253..186082 Clostridium phytofermentans ISDg 5744292 YP_001557270.1 CDS Cphy_0142 NC_010001.1 186300 186788 D PFAM: GCN5-related N-acetyltransferase; KEGG: cbh:CLC_1033 acetyltransferase, GNAT family; N-acetyltransferase GCN5 186300..186788 Clostridium phytofermentans ISDg 5744293 YP_001557271.1 CDS Cphy_0143 NC_010001.1 187663 189414 D PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ctc:CTC00992 magnesium-protoporphyrin IX monomethyl ester oxidative cyclase; cobalamin B12-binding domain-containing protein 187663..189414 Clostridium phytofermentans ISDg 5744297 YP_001557272.1 CDS Cphy_0144 NC_010001.1 189479 190168 D KEGG: cth:Cthe_1283 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 189479..190168 Clostridium phytofermentans ISDg 5744298 YP_001557273.1 CDS Cphy_0145 NC_010001.1 190232 190939 D KEGG: cth:Cthe_0996 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 190232..190939 Clostridium phytofermentans ISDg 5744299 YP_001557274.1 CDS Cphy_0146 NC_010001.1 190986 191600 R hypothetical protein complement(190986..191600) Clostridium phytofermentans ISDg 5744300 YP_001557275.1 CDS Cphy_0147 NC_010001.1 191877 192836 D PFAM: VanW family protein; KEGG: csc:Csac_1552 VanW family protein; VanW family protein 191877..192836 Clostridium phytofermentans ISDg 5744301 YP_001557276.1 CDS Cphy_0148 NC_010001.1 193050 194048 D PFAM: AIR synthase related protein domain protein; KEGG: tte:TTE1537 hydrogenase maturation factor; AIR synthase-like protein 193050..194048 Clostridium phytofermentans ISDg 5744302 YP_001557277.1 CDS Cphy_0149 NC_010001.1 194082 194564 D PFAM: regulatory protein AsnC/Lrp family; KEGG: csc:Csac_1961 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 194082..194564 Clostridium phytofermentans ISDg 5744303 YP_001557278.1 CDS Cphy_0150 NC_010001.1 194561 195721 D PFAM: aminotransferase class I and II; KEGG: cth:Cthe_0363 aminotransferase, class I and II; class I and II aminotransferase 194561..195721 Clostridium phytofermentans ISDg 5744304 YP_001557279.1 CDS Cphy_0151 NC_010001.1 195976 196446 D PFAM: CheC domain protein; KEGG: csc:Csac_1295 CheC domain protein; chemotaxis protein CheC 195976..196446 Clostridium phytofermentans ISDg 5744305 YP_001557280.1 CDS Cphy_0152 NC_010001.1 196601 197101 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cth:Cthe_0127 RNA methyltransferase, TrmH family, group 2; tRNA/rRNA methyltransferase SpoU 196601..197101 Clostridium phytofermentans ISDg 5744306 YP_001557281.1 CDS Cphy_0153 NC_010001.1 197521 199911 D KEGG: cth:Cthe_1014 MutS2 family protein; TIGRFAM: MutS2 family protein; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein; MutS2 family protein 197521..199911 Clostridium phytofermentans ISDg 5744307 YP_001557282.1 CDS Cphy_0154 NC_010001.1 199945 200661 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1288 two component transcriptional regulator, winged helix family; two component transcriptional regulator 199945..200661 Clostridium phytofermentans ISDg 5744308 YP_001557283.1 CDS Cphy_0155 NC_010001.1 200702 202090 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE2569 sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 200702..202090 Clostridium phytofermentans ISDg 5744309 YP_001557284.1 CDS Cphy_0156 NC_010001.1 202257 203633 D PFAM: PDZ/DHR/GLGF domain protein; KEGG: ckl:CKL_2696 predicted protease; PDZ/DHR/GLGF domain-containing protein 202257..203633 Clostridium phytofermentans ISDg 5744310 YP_001557285.1 CDS Cphy_0157 NC_010001.1 203748 204632 R PFAM: GCN5-related N-acetyltransferase; KEGG: cbh:CLC_0312 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(203748..204632) Clostridium phytofermentans ISDg 5744311 YP_001557286.1 CDS Cphy_0158 NC_010001.1 204918 205865 D KEGG: sat:SYN_02192 HD-superfamily hydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 204918..205865 Clostridium phytofermentans ISDg 5744312 YP_001557287.1 CDS Cphy_0159 NC_010001.1 206112 207518 D TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: amt:Amet_4060 RNA methyltransferase, TrmA family; RNA methyltransferase 206112..207518 Clostridium phytofermentans ISDg 5745028 YP_001557288.1 CDS Cphy_0160 NC_010001.1 207721 208305 D PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cth:Cthe_1389 metal dependent phosphohydrolase; metal dependent phosphohydrolase 207721..208305 Clostridium phytofermentans ISDg 5745029 YP_001557289.1 CDS Cphy_0161 NC_010001.1 208327 208629 D KEGG: bld:BLi04142 YkgB; hypothetical protein 208327..208629 Clostridium phytofermentans ISDg 5745030 YP_001557290.1 CDS Cphy_0162 NC_010001.1 208651 209175 D KEGG: dsy:DSY1015 hypothetical protein; hypothetical protein 208651..209175 Clostridium phytofermentans ISDg 5745031 YP_001557291.1 CDS Cphy_0163 NC_010001.1 209338 209613 D KEGG: cbe:Cbei_2447 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 209338..209613 Clostridium phytofermentans ISDg 5745032 YP_001557292.1 CDS Cphy_0164 NC_010001.1 209694 210575 D PFAM: beta-lactamase domain protein; KEGG: cdf:CD1802 hydrolase; beta-lactamase domain-containing protein 209694..210575 Clostridium phytofermentans ISDg 5745033 YP_001557293.1 CDS Cphy_0165 NC_010001.1 210894 211790 D PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: ctc:CTC01432 transcriptional regulatory protein; AraC family transcriptional regulator 210894..211790 Clostridium phytofermentans ISDg 5745034 YP_001557294.1 CDS Cphy_0168 NC_010001.1 212694 213392 D PFAM: transglutaminase domain protein; KEGG: amt:Amet_3922 hypothetical protein; transglutaminase domain-containing protein 212694..213392 Clostridium phytofermentans ISDg 5745036 YP_001557295.1 CDS Cphy_0169 NC_010001.1 213494 213919 R PFAM: helix-turn-helix domain protein; KEGG: bay:RBAM_012510 Xre; XRE family transcriptional regulator complement(213494..213919) Clostridium phytofermentans ISDg 5745037 YP_001557296.1 CDS Cphy_0170 NC_010001.1 214132 214602 D PFAM: DNA repair protein RadC; KEGG: cpr:CPR_2111 DNA repair protein, RadC family; DNA repair protein RadC 214132..214602 Clostridium phytofermentans ISDg 5745038 YP_001557297.1 CDS Cphy_0171 NC_010001.1 214786 216945 R TIGRFAM: diguanylate cyclase; PFAM: helix-turn-helix- domain containing protein AraC type; GGDEF domain containing protein; KEGG: cbe:Cbei_3076 diguanylate cyclase; AraC family transcriptional regulator complement(214786..216945) Clostridium phytofermentans ISDg 5745039 YP_001557298.1 CDS Cphy_0172 NC_010001.1 217242 218183 D PFAM: helix-turn-helix domain protein; KEGG: spd:SPD_1745 transcriptional regulator PlcR; helix-turn-helix domain-containing protein 217242..218183 Clostridium phytofermentans ISDg 5745040 YP_001557299.1 CDS Cphy_0173 NC_010001.1 218439 219458 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sun:SUN_0557 hypothetical protein; diguanylate cyclase 218439..219458 Clostridium phytofermentans ISDg 5745041 YP_001557300.1 CDS Cphy_0174 NC_010001.1 219658 219915 D KEGG: llc:LACR_1589 peptidase E; hypothetical protein 219658..219915 Clostridium phytofermentans ISDg 5745042 YP_001557301.1 CDS Cphy_0175 NC_010001.1 220274 222049 R in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen complement(220274..222049) Clostridium phytofermentans ISDg 5745043 YP_001557302.1 CDS Cphy_0176 NC_010001.1 222247 222819 R PFAM: regulatory protein TetR; KEGG: cbf:CLI_2106 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(222247..222819) Clostridium phytofermentans ISDg 5745044 YP_001557303.1 CDS Cphy_0177 NC_010001.1 223270 223944 D PFAM: protein of unknown function UPF0153; KEGG: cte:CT0872 hypothetical protein; hypothetical protein 223270..223944 Clostridium phytofermentans ISDg 5745045 YP_001557304.1 CDS Cphy_0178 NC_010001.1 224031 224828 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cdf:CD1963 hypothetical protein; methyltransferase type 11 224031..224828 Clostridium phytofermentans ISDg 5745046 YP_001557305.1 CDS Cphy_0179 NC_010001.1 225030 225293 D PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: mla:Mlab_0303 hypothetical protein; ArsR family transcriptional regulator 225030..225293 Clostridium phytofermentans ISDg 5745047 YP_001557306.1 CDS Cphy_0180 NC_010001.1 225379 226032 D PFAM: protein of unknown function DUF1648; KEGG: bcl:ABC3712 hypothetical protein; hypothetical protein 225379..226032 Clostridium phytofermentans ISDg 5745048 YP_001557307.1 CDS Cphy_0181 NC_010001.1 226406 227530 D PFAM: aminotransferase class V; aminotransferase class I and II; KEGG: gtn:GTNG_2699 cysteine desulfhydrase; class V aminotransferase 226406..227530 Clostridium phytofermentans ISDg 5745049 YP_001557308.1 CDS Cphy_0182 NC_010001.1 227708 228574 D PFAM: PP-loop domain protein; KEGG: cbo:CBO0341 hypothetical protein; PP-loop domain-containing protein 227708..228574 Clostridium phytofermentans ISDg 5745050 YP_001557309.1 CDS Cphy_0183 NC_010001.1 229100 229969 D PFAM: Radical SAM domain protein; KEGG: mla:Mlab_0619 hypothetical protein; radical SAM domain-containing protein 229100..229969 Clostridium phytofermentans ISDg 5745051 YP_001557310.1 CDS Cphy_0184 NC_010001.1 230082 230633 D KEGG: cbe:Cbei_3897 hypothetical protein; hypothetical protein 230082..230633 Clostridium phytofermentans ISDg 5745052 YP_001557311.1 CDS Cphy_0185 NC_010001.1 230930 231298 D PFAM: regulatory protein GntR HTH; KEGG: lre:Lreu_1332 regulatory protein GntR, HTH; GntR family transcriptional regulator 230930..231298 Clostridium phytofermentans ISDg 5745053 YP_001557312.1 CDS Cphy_0186 NC_010001.1 231295 232161 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_1248 ABC transporter, ATP-binding protein; ABC transporter 231295..232161 Clostridium phytofermentans ISDg 5745054 YP_001557313.1 CDS Cphy_0187 NC_010001.1 232161 232895 D KEGG: cbh:CLC_1249 hypothetical protein; hypothetical protein 232161..232895 Clostridium phytofermentans ISDg 5745055 YP_001557314.1 CDS Cphy_0188 NC_010001.1 232976 234154 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cac:CAC3332 predicted amidohydrolase (dihydroorothase family); amidohydrolase complement(232976..234154) Clostridium phytofermentans ISDg 5745056 YP_001557315.1 CDS Cphy_0189 NC_010001.1 234483 234971 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cbe:Cbei_0409 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 234483..234971 Clostridium phytofermentans ISDg 5745057 YP_001557316.1 CDS Cphy_0190 NC_010001.1 235186 236616 D PFAM: beta-lactamase; KEGG: pdi:BDI_1500 beta-lactamase class C, 6-aminohexanoate-dimer hydrolase; beta-lactamase 235186..236616 Clostridium phytofermentans ISDg 5745058 YP_001557317.1 CDS Cphy_0191 NC_010001.1 236617 238155 D PFAM: glycoside hydrolase family 43; KEGG: bld:BLi00864 xylan beta-1,4-xylosidase; RBL03427; glycoside hydrolase family protein 236617..238155 Clostridium phytofermentans ISDg 5745059 YP_001557318.1 CDS Cphy_0192 NC_010001.1 238298 240091 R PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: ppe:PEPE_1650 ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter complement(238298..240091) Clostridium phytofermentans ISDg 5745060 YP_001557319.1 CDS Cphy_0193 NC_010001.1 240094 242037 R PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: cbe:Cbei_4728 ABC transporter related; ABC transporter complement(240094..242037) Clostridium phytofermentans ISDg 5745061 YP_001557320.1 CDS Cphy_0194 NC_010001.1 242049 242735 R hypothetical protein complement(242049..242735) Clostridium phytofermentans ISDg 5745062 YP_001557321.1 CDS Cphy_0195 NC_010001.1 242919 244052 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: amt:Amet_4746 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(242919..244052) Clostridium phytofermentans ISDg 5745063 YP_001557322.1 CDS Cphy_0196 NC_010001.1 244049 244729 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:CTC01482 transcriptional activator protein; two component transcriptional regulator complement(244049..244729) Clostridium phytofermentans ISDg 5745064 YP_001557323.1 CDS Cphy_0197 NC_010001.1 244835 245491 D hypothetical protein 244835..245491 Clostridium phytofermentans ISDg 5745065 YP_001557324.1 CDS Cphy_0198 NC_010001.1 245608 246474 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ctc:CTC01480 conserved protein, ferredoxin-type protein NapH; 4Fe-4S ferredoxin 245608..246474 Clostridium phytofermentans ISDg 5745066 YP_001557325.1 CDS Cphy_0199 NC_010001.1 246458 246991 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ctc:CTC01479 hypothetical protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 246458..246991 Clostridium phytofermentans ISDg 5745067 YP_001557326.1 CDS Cphy_0200 NC_010001.1 247133 248617 R KEGG: cac:CAC2610 L-fucose isomerase related protein; L-fucose isomerase complement(247133..248617) Clostridium phytofermentans ISDg 5745068 YP_001557327.1 CDS Cphy_0201 NC_010001.1 249113 251323 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: csc:Csac_2452 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 249113..251323 Clostridium phytofermentans ISDg 5745069 YP_001557328.1 CDS Cphy_0202 NC_010001.1 251342 252022 D PFAM: MgtC/SapB transporter; KEGG: cbe:Cbei_2642 MgtC/SapB transporter; MgtC/SapB transporter 251342..252022 Clostridium phytofermentans ISDg 5745070 YP_001557329.1 CDS Cphy_0203 NC_010001.1 252199 253326 D PFAM: glycosyl hydrolase family 88; KEGG: amt:Amet_0895 glycosyl hydrolase, family 88; glycosyl hydrolase family protein 252199..253326 Clostridium phytofermentans ISDg 5745071 YP_001557330.1 CDS Cphy_0204 NC_010001.1 253676 254716 D PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; KEGG: ssp:SSP1089 FKBP-type peptidyl-prolyl cis-trans isomerase; peptidylprolyl isomerase FKBP-type 253676..254716 Clostridium phytofermentans ISDg 5745072 YP_001557331.1 CDS Cphy_0205 NC_010001.1 254877 255548 R PFAM: manganese and iron superoxide dismutase; KEGG: cdf:CD1631 superoxide dismutase (Mn); superoxide dismutase complement(254877..255548) Clostridium phytofermentans ISDg 5745073 YP_001557332.1 CDS Cphy_0206 NC_010001.1 255647 256024 D PFAM: arsenate reductase and related; KEGG: ctc:CTC01181 arsenate reductase; arsenate reductase 255647..256024 Clostridium phytofermentans ISDg 5745074 YP_001557333.1 CDS Cphy_0207 NC_010001.1 256191 257048 D KEGG: cdf:CD0306 hypothetical protein; hypothetical protein 256191..257048 Clostridium phytofermentans ISDg 5745075 YP_001557334.1 CDS Cphy_0208 NC_010001.1 257050 257670 D PFAM: heat shock protein DnaJ domain protein; KEGG: cbf:CLI_0254 molecular chaperone, DnaJ family; molecular chaperone DnaJ 257050..257670 Clostridium phytofermentans ISDg 5745076 YP_001557335.1 CDS Cphy_0209 NC_010001.1 257661 258230 D KEGG: cdf:CD0308 hypothetical protein; hypothetical protein 257661..258230 Clostridium phytofermentans ISDg 5745077 YP_001557336.1 CDS Cphy_0210 NC_010001.1 258892 259182 D TIGRFAM: sporulation transcriptional regulator SpoIIID; KEGG: cth:Cthe_2618 stage III sporulation protein D, SpoIIID; sporulation transcriptional regulator SpoIIID 258892..259182 Clostridium phytofermentans ISDg 5745078 YP_001557337.1 CDS Cphy_0211 NC_010001.1 259945 261264 D TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: cbh:CLC_0426 electron transport complex, RnfABCDGE type, C subunit; RnfABCDGE type electron transport complex subunit C 259945..261264 Clostridium phytofermentans ISDg 5745079 YP_001557338.1 CDS Cphy_0212 NC_010001.1 261309 262319 D TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: ctc:CTC01020 RnfD/NqrB; RnfABCDGE type electron transport complex subunit D 261309..262319 Clostridium phytofermentans ISDg 5745080 YP_001557339.1 CDS Cphy_0213 NC_010001.1 262309 262965 D PFAM: FMN-binding domain protein; KEGG: cdf:CD1139 electron transport complex protein; FMN-binding domain-containing protein 262309..262965 Clostridium phytofermentans ISDg 5745081 YP_001557340.1 CDS Cphy_0214 NC_010001.1 262958 263719 D TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: ctc:CTC01022 rnfE/nqrD; RnfABCDGE type electron transport complex subunit E 262958..263719 Clostridium phytofermentans ISDg 5745082 YP_001557341.1 CDS Cphy_0215 NC_010001.1 263734 264309 D TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: fnu:FN1592 Na(+)-translocating NADH-quinone reductase subunit D; RnfABCDGE type electron transport complex subunit A 263734..264309 Clostridium phytofermentans ISDg 5745083 YP_001557342.1 CDS Cphy_0216 NC_010001.1 264327 265175 D TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: cno:NT01CX_1584 polyferredoxin; RnfABCDGE type electron transport complex subunit B 264327..265175 Clostridium phytofermentans ISDg 5745084 YP_001557343.1 CDS Cphy_0217 NC_010001.1 265478 266050 D hypothetical protein 265478..266050 Clostridium phytofermentans ISDg 5745085 YP_001557344.1 CDS Cphy_0218 NC_010001.1 266504 268846 D catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides; alpha-xylosidase 266504..268846 Clostridium phytofermentans ISDg 5745086 YP_001557345.1 CDS Cphy_0219 NC_010001.1 268918 269046 D hypothetical protein 268918..269046 Clostridium phytofermentans ISDg 5745087 YP_001557346.1 CDS Cphy_0220 NC_010001.1 269141 271306 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: pdi:BDI_3104 glycoside hydrolase family 3, candidate beta-glycosidase; glycoside hydrolase family 3 269141..271306 Clostridium phytofermentans ISDg 5745088 YP_001557347.1 CDS gltX NC_010001.1 271681 273153 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 271681..273153 Clostridium phytofermentans ISDg 5745089 YP_001557348.1 CDS Cphy_0222 NC_010001.1 273457 275457 D PFAM: UvrD/REP helicase; KEGG: amt:Amet_2202 UvrD/REP helicase; UvrD/REP helicase 273457..275457 Clostridium phytofermentans ISDg 5745090 YP_001557349.1 CDS Cphy_0223 NC_010001.1 275696 276031 R PFAM: protein of unknown function DUF1292; KEGG: amt:Amet_0705 protein of unknown function DUF1292; hypothetical protein complement(275696..276031) Clostridium phytofermentans ISDg 5745091 YP_001557350.1 CDS Cphy_0224 NC_010001.1 276345 278903 D PFAM: DEAD_2 domain protein; SMART: Helicase-like, DEXD box c2 type; helicase c2; KEGG: cth:Cthe_0289 DEAD_2; DEAD/DEAH box helicase 276345..278903 Clostridium phytofermentans ISDg 5745092 YP_001557351.1 CDS Cphy_0225 NC_010001.1 279075 279992 R PFAM: diacylglycerol kinase catalytic region; KEGG: tva:TVAG_429710 conserved hypothetical protein Pfam: DAGK_cat DAGK_acc; diacylglycerol kinase catalytic subunit complement(279075..279992) Clostridium phytofermentans ISDg 5745093 YP_001557352.1 CDS Cphy_0226 NC_010001.1 280345 282126 D PFAM: protein of unknown function DUF885; KEGG: slo:Shew_1130 protein of unknown function DUF885; hypothetical protein 280345..282126 Clostridium phytofermentans ISDg 5745094 YP_001557353.1 CDS Cphy_0227 NC_010001.1 282192 283226 R PFAM: PfkB domain protein; KEGG: amt:Amet_1262 PfkB domain protein; ribokinase-like domain-containing protein complement(282192..283226) Clostridium phytofermentans ISDg 5745095 YP_001557354.1 CDS Cphy_0228 NC_010001.1 283704 284357 D KEGG: nar:Saro_1184 endo alpha-1,4 polygalactosaminidase; hypothetical protein 283704..284357 Clostridium phytofermentans ISDg 5745096 YP_001557355.1 CDS Cphy_0229 NC_010001.1 284607 285221 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: amt:Amet_3127 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 284607..285221 Clostridium phytofermentans ISDg 5745097 YP_001557356.1 CDS Cphy_0230 NC_010001.1 285208 285843 D hypothetical protein 285208..285843 Clostridium phytofermentans ISDg 5745098 YP_001557357.1 CDS Cphy_0231 NC_010001.1 285891 287309 D PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: cno:NT01CX_1336 alginate O-acetylation protein; membrane bound O-acyl transferase MBOAT family protein 285891..287309 Clostridium phytofermentans ISDg 5745099 YP_001557358.1 CDS Cphy_0232 NC_010001.1 287321 288520 D KEGG: ctc:CTC00591 hypothetical protein; hypothetical protein 287321..288520 Clostridium phytofermentans ISDg 5745100 YP_001557359.1 CDS Cphy_0233 NC_010001.1 288696 289409 R PFAM: phospholipid/glycerol acyltransferase; KEGG: oih:OB0869 1-acyl-sn-glycerol-3-phosphate acetyltransferase; phospholipid/glycerol acyltransferase complement(288696..289409) Clostridium phytofermentans ISDg 5745101 YP_001557360.1 CDS Cphy_0234 NC_010001.1 289502 290617 R TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: csc:Csac_0883 RNA polymerase, sigma 70 subunit, RpoD family; RpoD family RNA polymerase sigma factor complement(289502..290617) Clostridium phytofermentans ISDg 5745102 YP_001557361.1 CDS rpsL NC_010001.1 291402 291824 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 291402..291824 Clostridium phytofermentans ISDg 5745103 YP_001557362.1 CDS Cphy_0236 NC_010001.1 292063 292533 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 292063..292533 Clostridium phytofermentans ISDg 5745104 YP_001557363.1 CDS Cphy_0237 NC_010001.1 292844 294961 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 292844..294961 Clostridium phytofermentans ISDg 5745105 YP_001557364.1 CDS Cphy_0238 NC_010001.1 295200 296393 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 295200..296393 Clostridium phytofermentans ISDg 5745106 YP_001557365.1 CDS Cphy_0239 NC_010001.1 296631 297458 D hypothetical protein 296631..297458 Clostridium phytofermentans ISDg 5745107 YP_001557366.1 CDS Cphy_0240 NC_010001.1 297866 299836 D PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cdf:CD1616 signaling protein; diguanylate cyclase/phosphodiesterase 297866..299836 Clostridium phytofermentans ISDg 5745108 YP_001557367.1 CDS Cphy_0241 NC_010001.1 299816 300436 R hypothetical protein complement(299816..300436) Clostridium phytofermentans ISDg 5745109 YP_001557368.1 CDS Cphy_0242 NC_010001.1 300818 301807 D TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; KEGG: cth:Cthe_2619 cell shape determining protein, MreB/Mrl family; rod shape-determining protein MreB 300818..301807 Clostridium phytofermentans ISDg 5745110 YP_001557369.1 CDS Cphy_0243 NC_010001.1 301931 302704 D PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: pth:PTH_2067 flagellar hook protein FlgE; flagellar basal body rod protein 301931..302704 Clostridium phytofermentans ISDg 5745111 YP_001557370.1 CDS Cphy_0244 NC_010001.1 302817 303632 D PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_2621 protein of unknown function DUF1078-like protein; hypothetical protein 302817..303632 Clostridium phytofermentans ISDg 5745112 YP_001557371.1 CDS Cphy_0245 NC_010001.1 303737 304081 D KEGG: cth:Cthe_2622 hypothetical protein; hypothetical protein 303737..304081 Clostridium phytofermentans ISDg 5745113 YP_001557372.1 CDS Cphy_0246 NC_010001.1 304326 306554 D KEGG: amt:Amet_0722 helicase, RecD/TraA family; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase; recombinase D 304326..306554 Clostridium phytofermentans ISDg 5745114 YP_001557373.1 CDS Cphy_0247 NC_010001.1 306745 307665 D KEGG: bfs:BF3922 hypothetical protein; hypothetical protein 306745..307665 Clostridium phytofermentans ISDg 5745115 YP_001557374.1 CDS Cphy_0248 NC_010001.1 307688 308425 D KEGG: tte:TTE0490 predicted amidophosphoribosyltransferases; amidophosphoribosyltransferase 307688..308425 Clostridium phytofermentans ISDg 5745116 YP_001557375.1 CDS Cphy_0249 NC_010001.1 308496 308897 D KEGG: cth:Cthe_2247 regulatory protein, MerR; hypothetical protein 308496..308897 Clostridium phytofermentans ISDg 5745117 YP_001557376.1 CDS Cphy_0250 NC_010001.1 309186 310025 R PFAM: RNA binding S1 domain protein; KEGG: cbh:CLC_1722 RNA-binding protein; RNA-binding S1 domain-containing protein complement(309186..310025) Clostridium phytofermentans ISDg 5745118 YP_001557377.1 CDS Cphy_0251 NC_010001.1 310038 310751 R PFAM: acyl-ACP thioesterase; KEGG: cbf:CLI_3859 acyl-ACP thioesterase family protein; acyl-ACP thioesterase complement(310038..310751) Clostridium phytofermentans ISDg 5745119 YP_001557378.1 CDS Cphy_0252 NC_010001.1 311051 312250 D PFAM: Abortive infection protein; KEGG: amt:Amet_1623 abortive infection protein; abortive infection protein 311051..312250 Clostridium phytofermentans ISDg 5745120 YP_001557379.1 CDS Cphy_0253 NC_010001.1 312240 312416 R KEGG: amt:Amet_0741 hypothetical protein; hypothetical protein complement(312240..312416) Clostridium phytofermentans ISDg 5745121 YP_001557380.1 CDS Cphy_0254 NC_010001.1 312520 313446 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; KEGG: tte:TTE2220 thioredoxin reductase; thioredoxin reductase 312520..313446 Clostridium phytofermentans ISDg 5744177 YP_001557381.1 CDS Cphy_0255 NC_010001.1 314508 315044 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: cac:CAC2847 ribosome-associated protein Y (PSrp-1); sigma 54 modulation protein/ribosomal protein S30EA 314508..315044 Clostridium phytofermentans ISDg 5744178 YP_001557382.1 CDS Cphy_0256 NC_010001.1 315431 318007 D TIGRFAM: preprotein translocase, SecA subunit; PFAM: helicase domain protein; SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: csc:Csac_1325 preprotein translocase, SecA subunit; Preprotein translocase subunit SecA 315431..318007 Clostridium phytofermentans ISDg 5744179 YP_001557383.1 CDS Cphy_0257 NC_010001.1 318278 319279 D TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: cth:Cthe_0365 peptide chain release factor 2; peptide chain release factor 2 318278..319279 Clostridium phytofermentans ISDg 5744180 YP_001557384.1 CDS Cphy_0258 NC_010001.1 319531 319989 D PFAM: CheW domain protein; KEGG: maq:Maqu_1966 CheW protein; chemotaxis protein CheW 319531..319989 Clostridium phytofermentans ISDg 5744181 YP_001557385.1 CDS Cphy_0259 NC_010001.1 320208 322196 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 320208..322196 Clostridium phytofermentans ISDg 5744182 YP_001557386.1 CDS Cphy_0260 NC_010001.1 322207 325050 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: cth:Cthe_0311 excinuclease ABC, A subunit; excinuclease ABC subunit A 322207..325050 Clostridium phytofermentans ISDg 5744183 YP_001557387.1 CDS Cphy_0261 NC_010001.1 325091 325672 D KEGG: ppd:Ppro_1070 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 325091..325672 Clostridium phytofermentans ISDg 5744184 YP_001557388.1 CDS Cphy_0262 NC_010001.1 325777 326940 R PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dps:DP1647 flavoprotein; beta-lactamase domain-containing protein complement(325777..326940) Clostridium phytofermentans ISDg 5744185 YP_001557389.1 CDS Cphy_0263 NC_010001.1 327680 329335 D PFAM: von Willebrand factor type A; KEGG: cth:Cthe_3075 von Willebrand factor, type A; von Willebrand factor type A 327680..329335 Clostridium phytofermentans ISDg 5744186 YP_001557390.1 CDS guaA NC_010001.1 329775 331298 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 329775..331298 Clostridium phytofermentans ISDg 5744187 YP_001557391.1 CDS Cphy_0265 NC_010001.1 332463 332927 D KEGG: sbl:Sbal_2840 hypothetical protein; hypothetical protein 332463..332927 Clostridium phytofermentans ISDg 5744188 YP_001557392.1 CDS Cphy_0266 NC_010001.1 332911 333495 D hypothetical protein 332911..333495 Clostridium phytofermentans ISDg 5744189 YP_001557393.1 CDS Cphy_0267 NC_010001.1 333780 335354 D KEGG: fps:FP1566 probable modification methyltransferase; modification methyltransferase 333780..335354 Clostridium phytofermentans ISDg 5744190 YP_001557394.1 CDS Cphy_0268 NC_010001.1 335347 337563 D PFAM: ATP-binding region ATPase domain protein; KEGG: pfo:Pfl_4625 histidine kinase; histidine kinase 335347..337563 Clostridium phytofermentans ISDg 5744191 YP_001557395.1 CDS Cphy_0269 NC_010001.1 337553 338248 D hypothetical protein 337553..338248 Clostridium phytofermentans ISDg 5744192 YP_001557396.1 CDS Cphy_0270 NC_010001.1 338241 339011 D KEGG: pfo:Pfl_4627 HNH endonuclease; hypothetical protein 338241..339011 Clostridium phytofermentans ISDg 5744193 YP_001557397.1 CDS Cphy_0271 NC_010001.1 339345 339923 D hypothetical protein 339345..339923 Clostridium phytofermentans ISDg 5744194 YP_001557398.1 CDS Cphy_0272 NC_010001.1 340147 340566 D hypothetical protein 340147..340566 Clostridium phytofermentans ISDg 5744195 YP_001557399.1 CDS Cphy_0273 NC_010001.1 341024 341944 D PFAM: filamentation induced by cAMP protein Fic; KEGG: dsy:DSY0147 hypothetical protein; filamentation induced by cAMP protein fic 341024..341944 Clostridium phytofermentans ISDg 5744196 YP_001557400.1 CDS Cphy_0274 NC_010001.1 342030 343130 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: amt:Amet_3776 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 342030..343130 Clostridium phytofermentans ISDg 5744197 YP_001557401.1 CDS Cphy_0275 NC_010001.1 343239 344069 D PFAM: helix-turn-helix domain protein; KEGG: mla:Mlab_0650 hypothetical protein; XRE family transcriptional regulator 343239..344069 Clostridium phytofermentans ISDg 5744198 YP_001557402.1 CDS Cphy_0276 NC_010001.1 344532 345398 R PFAM: regulatory protein MerR; KEGG: dsy:DSY1016 hypothetical protein; MerR family transcriptional regulator complement(344532..345398) Clostridium phytofermentans ISDg 5744199 YP_001557403.1 CDS Cphy_0277 NC_010001.1 345854 346531 D PFAM: protein of unknown function DUF1275; KEGG: lmo:lmo0450 hypothetical protein; hypothetical protein 345854..346531 Clostridium phytofermentans ISDg 5744200 YP_001557404.1 CDS Cphy_0278 NC_010001.1 346628 347287 D KEGG: gur:Gura_2911 hypothetical protein; hypothetical protein 346628..347287 Clostridium phytofermentans ISDg 5744201 YP_001557405.1 CDS Cphy_0279 NC_010001.1 347574 348416 R KEGG: cbe:Cbei_4038 hypothetical protein; hypothetical protein complement(347574..348416) Clostridium phytofermentans ISDg 5744202 YP_001557406.1 CDS Cphy_0280 NC_010001.1 348483 349025 R KEGG: cac:CAC3435 hypothetical protein; hypothetical protein complement(348483..349025) Clostridium phytofermentans ISDg 5744203 YP_001557407.1 CDS Cphy_0281 NC_010001.1 349185 349946 D PFAM: purine or other phosphorylase family 1; KEGG: sgo:SGO_0487 phosphorylase, Pnp/UDP family; purine phosphorylase family 1 349185..349946 Clostridium phytofermentans ISDg 5744204 YP_001557408.1 CDS Cphy_0282 NC_010001.1 350094 351305 D hypothetical protein 350094..351305 Clostridium phytofermentans ISDg 5744205 YP_001557409.1 CDS Cphy_0283 NC_010001.1 351565 352659 D KEGG: mlo:mlr7467 hypothetical protein; hypothetical protein 351565..352659 Clostridium phytofermentans ISDg 5744206 YP_001557410.1 CDS Cphy_0284 NC_010001.1 352773 353978 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: ljo:LJ1010 trigger factor; FKBP-type peptidylprolyl isomerase complement(352773..353978) Clostridium phytofermentans ISDg 5744207 YP_001557411.1 CDS Cphy_0285 NC_010001.1 354430 356565 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_4017 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 354430..356565 Clostridium phytofermentans ISDg 5744208 YP_001557412.1 CDS Cphy_0286 NC_010001.1 356849 357376 D KEGG: ctc:CTC01413 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase 356849..357376 Clostridium phytofermentans ISDg 5744209 YP_001557413.1 CDS Cphy_0287 NC_010001.1 357478 358032 D PFAM: GCN5-related N-acetyltransferase; KEGG: lsl:LSL_0634 phosphinothricin N-acetyltransferase; N-acetyltransferase GCN5 357478..358032 Clostridium phytofermentans ISDg 5744210 YP_001557414.1 CDS Cphy_0288 NC_010001.1 358277 359431 R PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 unsaturated glucuronyl hydrolase; glycosyl hydrolase family protein complement(358277..359431) Clostridium phytofermentans ISDg 5744211 YP_001557415.1 CDS Cphy_0289 NC_010001.1 359443 360273 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120663 permease component of ABC transporter; binding-protein-dependent transport system inner membrane protein complement(359443..360273) Clostridium phytofermentans ISDg 5744212 YP_001557416.1 CDS Cphy_0290 NC_010001.1 360288 361181 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2233 ABC transporter, permease; binding-protein-dependent transport systems inner membrane component complement(360288..361181) Clostridium phytofermentans ISDg 5744213 YP_001557417.1 CDS Cphy_0291 NC_010001.1 361234 362583 R PFAM: extracellular solute-binding protein family 1; KEGG: rle:pRL120659 substrate-binding component of ABC transporter; extracellular solute-binding protein complement(361234..362583) Clostridium phytofermentans ISDg 5744214 YP_001557418.1 CDS Cphy_0292 NC_010001.1 362867 364387 D PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4458 histidine kinase internal region; signal transduction histidine kinase, LytS 362867..364387 Clostridium phytofermentans ISDg 5744215 YP_001557419.1 CDS Cphy_0293 NC_010001.1 364406 366004 D PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: tte:TTE0288 CheY-like receiver domains; two component AraC family transcriptional regulator 364406..366004 Clostridium phytofermentans ISDg 5744216 YP_001557420.1 CDS Cphy_0294 NC_010001.1 366262 366486 D hypothetical protein 366262..366486 Clostridium phytofermentans ISDg 5744217 YP_001557421.1 CDS Cphy_0295 NC_010001.1 366857 369103 R PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; KEGG: cno:NT01CX_0861 DNA gyrase, A subunit; DNA topoisomerase complement(366857..369103) Clostridium phytofermentans ISDg 5744218 YP_001557422.1 CDS Cphy_0296 NC_010001.1 369348 371276 R KEGG: gka:GK0005 DNA gyrase subunit B; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA topoisomerase complement(369348..371276) Clostridium phytofermentans ISDg 5744219 YP_001557423.1 CDS Cphy_0297 NC_010001.1 371897 374809 D PFAM: glycosyl transferase family 2; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: bld:BLi03816 hypothetical protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 371897..374809 Clostridium phytofermentans ISDg 5744220 YP_001557424.1 CDS Cphy_0298 NC_010001.1 374809 375912 D KEGG: amt:Amet_0211 hypothetical protein; hypothetical protein 374809..375912 Clostridium phytofermentans ISDg 5744221 YP_001557425.1 CDS Cphy_0299 NC_010001.1 375937 376965 D PFAM: glycosyl transferase family 2; KEGG: lsa:LSA1519 teichoic acid/polysaccharide glycosyl transferase, family 2; glycosyl transferase family protein 375937..376965 Clostridium phytofermentans ISDg 5744222 YP_001557426.1 CDS Cphy_0300 NC_010001.1 377015 377401 D KEGG: lin:lin1076 highly similar to glycerol-3-phosphate cytidylyltransferase (gct), CDP-glycerol pyrophosphorylase (teichoic acid biosynthesis protein D); TIGRFAM: cytidyltransferase-related domain protein; glycerol-3-phosphate cytidylyltransferase; PFAM: cytidylyltransferase; glycerol-3-phosphate cytidylyltransferase 377015..377401 Clostridium phytofermentans ISDg 5744223 YP_001557427.1 CDS Cphy_0301 NC_010001.1 377579 378751 D PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: lmf:LMOf2365_1103 teichoic acid biosynthesis domain protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 377579..378751 Clostridium phytofermentans ISDg 5744224 YP_001557428.1 CDS Cphy_0302 NC_010001.1 379217 380476 D PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: drm:Dred_3249 Orn/DAP/Arg decarboxylase 2; Orn/DAP/Arg decarboxylase 2 379217..380476 Clostridium phytofermentans ISDg 5744225 YP_001557429.1 CDS Cphy_0303 NC_010001.1 381033 381305 D PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: csc:Csac_1662 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM 381033..381305 Clostridium phytofermentans ISDg 5744226 YP_001557430.1 CDS Cphy_0304 NC_010001.1 381357 381872 D KEGG: cth:Cthe_2245 hypothetical protein; hypothetical protein 381357..381872 Clostridium phytofermentans ISDg 5744227 YP_001557431.1 CDS Cphy_0305 NC_010001.1 381918 383780 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_2244 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 381918..383780 Clostridium phytofermentans ISDg 5744228 YP_001557432.1 CDS Cphy_0306 NC_010001.1 383872 385713 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: amt:Amet_0727 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 383872..385713 Clostridium phytofermentans ISDg 5744229 YP_001557433.1 CDS Cphy_0307 NC_010001.1 385771 387315 D TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: csc:Csac_1665 flagellar hook-associated protein 3; flagellar hook-associated protein 3 385771..387315 Clostridium phytofermentans ISDg 5744230 YP_001557434.1 CDS Cphy_0308 NC_010001.1 387427 387897 D PFAM: protein of unknown function DUF180; KEGG: cth:Cthe_2240 protein of unknown function DUF180; hypothetical protein 387427..387897 Clostridium phytofermentans ISDg 5744231 YP_001557435.1 CDS Cphy_0309 NC_010001.1 387891 388109 D PFAM: carbon storage regulator; KEGG: lbl:LBL_0100 carbon storage regulator protein A; carbon storage regulator CsrA 387891..388109 Clostridium phytofermentans ISDg 5744232 YP_001557436.1 CDS Cphy_0310 NC_010001.1 388399 388887 D hypothetical protein 388399..388887 Clostridium phytofermentans ISDg 5744233 YP_001557437.1 CDS Cphy_0311 NC_010001.1 389103 389477 D PFAM: flagellar protein FlaG protein; KEGG: csc:Csac_1698 flagellar protein FlaG protein; flagellar protein FlaG protein 389103..389477 Clostridium phytofermentans ISDg 5744234 YP_001557438.1 CDS Cphy_0312 NC_010001.1 389492 391567 D PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: drm:Dred_2418 flagellar hook-associated 2 domain protein; flagellar hook-associated 2 domain-containing protein 389492..391567 Clostridium phytofermentans ISDg 5744235 YP_001557439.1 CDS Cphy_0313 NC_010001.1 391596 391976 D PFAM: flagellar protein FliS; KEGG: cth:Cthe_2217 flagellar protein FliS; flagellar protein FliS 391596..391976 Clostridium phytofermentans ISDg 5744236 YP_001557440.1 CDS Cphy_0314 NC_010001.1 392121 392591 D KEGG: cth:Cthe_2216 hypothetical protein; hypothetical protein 392121..392591 Clostridium phytofermentans ISDg 5744237 YP_001557441.1 CDS Cphy_0315 NC_010001.1 392760 393596 D PFAM: flagellin domain protein; KEGG: cbh:CLC_2604 flagellin; flagellin domain-containing protein 392760..393596 Clostridium phytofermentans ISDg 5744238 YP_001557442.1 CDS Cphy_0316 NC_010001.1 393775 394935 D KEGG: cbe:Cbei_2712 FliB family protein; FliB family protein 393775..394935 Clostridium phytofermentans ISDg 5744239 YP_001557443.1 CDS Cphy_0317 NC_010001.1 395189 396976 D hypothetical protein 395189..396976 Clostridium phytofermentans ISDg 5744240 YP_001557444.1 CDS Cphy_0318 NC_010001.1 397096 398499 D KEGG: sfu:Sfum_0268 amidophosphoribosyltransferase; amidophosphoribosyltransferase 397096..398499 Clostridium phytofermentans ISDg 5744241 YP_001557445.1 CDS Cphy_0319 NC_010001.1 398539 399117 D PFAM: glycerol-3-phosphate responsive antiterminator; KEGG: spe:Spro_2465 glycerol-3-phosphate responsive antiterminator, GlpP; glycerol-3-phosphate responsive antiterminator GlpP 398539..399117 Clostridium phytofermentans ISDg 5744242 YP_001557446.1 CDS Cphy_0320 NC_010001.1 399661 401118 D PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ctc:CTC02436 glycerol-3-phosphate dehydrogenase; FAD dependent oxidoreductase 399661..401118 Clostridium phytofermentans ISDg 5744243 YP_001557447.1 CDS Cphy_0321 NC_010001.1 401119 402381 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC02435 sarcosine oxidase alpha subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 401119..402381 Clostridium phytofermentans ISDg 5744244 YP_001557448.1 CDS Cphy_0322 NC_010001.1 402394 402762 D PFAM: protein of unknown function DUF1667; KEGG: ctc:CTC02434 hypothetical protein; hypothetical protein 402394..402762 Clostridium phytofermentans ISDg 5744245 YP_001557449.1 CDS Cphy_0323 NC_010001.1 402853 403878 D PFAM: glycosyl transferase family 2; KEGG: cdf:CD3350 glycosyl transferase; glycosyl transferase family protein 402853..403878 Clostridium phytofermentans ISDg 5744246 YP_001557450.1 CDS Cphy_0324 NC_010001.1 404066 404515 D PFAM: peptidase A8 signal peptidase II; KEGG: chy:CHY_1506 signal peptidase II; peptidase A8 signal peptidase II 404066..404515 Clostridium phytofermentans ISDg 5744247 YP_001557451.1 CDS pyrG NC_010001.1 404694 406298 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(404694..406298) Clostridium phytofermentans ISDg 5744248 YP_001557452.1 CDS Cphy_0326 NC_010001.1 406898 408943 D KEGG: cbe:Cbei_3037 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 406898..408943 Clostridium phytofermentans ISDg 5744249 YP_001557453.1 CDS uvrC NC_010001.1 409162 411048 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 409162..411048 Clostridium phytofermentans ISDg 5744250 YP_001557454.1 CDS Cphy_0328 NC_010001.1 411257 412186 D TIGRFAM: HPr(Ser) kinase/phosphatase; PFAM: HPr serine kinase domain protein; KEGG: cth:Cthe_0110 HPr kinase; HPr kinase 411257..412186 Clostridium phytofermentans ISDg 5742174 YP_001557455.1 CDS Cphy_0329 NC_010001.1 412380 413318 D TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; ATPase BadF/BadG/BcrA/BcrD type; KEGG: cac:CAC2613 transcriptional regulators of NagC/XylR family; ROK family glucokinase 412380..413318 Clostridium phytofermentans ISDg 5742175 YP_001557456.1 CDS Cphy_0330 NC_010001.1 413478 414410 D KEGG: tte:TTE1836 UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 413478..414410 Clostridium phytofermentans ISDg 5742176 YP_001557457.1 CDS Cphy_0331 NC_010001.1 414428 415309 D PFAM: conserved hypothetical protein; KEGG: cac:CAC0511 predicted P-loop containing kinase, similar to B.subtilis YvcJ; hypothetical protein 414428..415309 Clostridium phytofermentans ISDg 5742177 YP_001557458.1 CDS Cphy_0332 NC_010001.1 415316 416257 D PFAM: protein of unknown function DUF199; KEGG: tte:TTE1821 hypothetical protein; hypothetical protein 415316..416257 Clostridium phytofermentans ISDg 5742178 YP_001557459.1 CDS Cphy_0333 NC_010001.1 416274 416531 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: oih:OB2465 catabolite repression HPr-like protein; phosphotransferase system, phosphocarrier protein HPr 416274..416531 Clostridium phytofermentans ISDg 5742179 YP_001557460.1 CDS Cphy_0334 NC_010001.1 416855 418246 D KEGG: sha:SH0302 hypothetical protein; hypothetical protein 416855..418246 Clostridium phytofermentans ISDg 5742180 YP_001557461.1 CDS dnaE NC_010001.1 418448 422008 D catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE 418448..422008 Clostridium phytofermentans ISDg 5742181 YP_001557462.1 CDS Cphy_0336 NC_010001.1 422399 423424 D KEGG: csc:Csac_1830 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase; 6-phosphofructokinase 422399..423424 Clostridium phytofermentans ISDg 5742182 YP_001557463.1 CDS Cphy_0337 NC_010001.1 423685 425433 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC01811 multidrug resistance ABC transporter ATP-binding and permease; ABC transporter 423685..425433 Clostridium phytofermentans ISDg 5742183 YP_001557464.1 CDS Cphy_0338 NC_010001.1 425701 427869 D PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: mmp:MMP1127 RNA binding S1; RNA-binding S1 domain-containing protein 425701..427869 Clostridium phytofermentans ISDg 5742184 YP_001557465.1 CDS Cphy_0339 NC_010001.1 428277 429278 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi01385 transmembrane lipoprotein; RBL02385; binding-protein-dependent transport system inner membrane protein 428277..429278 Clostridium phytofermentans ISDg 5742185 YP_001557466.1 CDS Cphy_0340 NC_010001.1 429392 430300 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi01386 transmembrane lipoprotein; RBL02384; binding-protein-dependent transport systems inner membrane component 429392..430300 Clostridium phytofermentans ISDg 5742186 YP_001557467.1 CDS Cphy_0341 NC_010001.1 430405 432018 D PFAM: extracellular solute-binding protein family 1; KEGG: bld:BLi01384 lipoprotein; RBL02387; extracellular solute-binding protein 430405..432018 Clostridium phytofermentans ISDg 5742187 YP_001557468.1 CDS Cphy_0342 NC_010001.1 432371 434707 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH0483 transcriptional regulator (AraC/XylS family); AraC family transcriptional regulator 432371..434707 Clostridium phytofermentans ISDg 5742188 YP_001557469.1 CDS Cphy_0343 NC_010001.1 434803 437214 D PFAM: FG-GAP repeat protein; KEGG: bha:BH1114 hypothetical protein; FG-GAP repeat-containing protein 434803..437214 Clostridium phytofermentans ISDg 5742189 YP_001557470.1 CDS Cphy_0344 NC_010001.1 437841 438587 D KEGG: cno:NT01CX_0505 hypothetical protein; membrane protein-like protein 437841..438587 Clostridium phytofermentans ISDg 5742190 YP_001557471.1 CDS Cphy_0345 NC_010001.1 438772 439278 D KEGG: bsu:BG10173 unknown; hypothetical protein 438772..439278 Clostridium phytofermentans ISDg 5742191 YP_001557472.1 CDS Cphy_0346 NC_010001.1 439293 439724 D PFAM: protein of unknown function UPF0079; KEGG: cth:Cthe_1776 protein of unknown function UPF0079; hypothetical protein 439293..439724 Clostridium phytofermentans ISDg 5742192 YP_001557473.1 CDS Cphy_0347 NC_010001.1 439847 440572 D PFAM: peptidase M22 glycoprotease; KEGG: cth:Cthe_1775 peptidase M22, glycoprotease; peptidase M22 glycoprotease 439847..440572 Clostridium phytofermentans ISDg 5742193 YP_001557474.1 CDS Cphy_0348 NC_010001.1 440559 440993 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: csc:Csac_0216 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 440559..440993 Clostridium phytofermentans ISDg 5742194 YP_001557475.1 CDS Cphy_0349 NC_010001.1 441107 441349 D hypothetical protein 441107..441349 Clostridium phytofermentans ISDg 5742195 YP_001557476.1 CDS Cphy_0350 NC_010001.1 441620 442534 D member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 441620..442534 Clostridium phytofermentans ISDg 5742196 YP_001557477.1 CDS Cphy_0351 NC_010001.1 442647 443312 D hypothetical protein 442647..443312 Clostridium phytofermentans ISDg 5742197 YP_001557478.1 CDS Cphy_0352 NC_010001.1 443491 444552 D KEGG: cno:NT01CX_0478 metalloendopeptidase, , glycoprotease family; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase 443491..444552 Clostridium phytofermentans ISDg 5742198 YP_001557479.1 CDS Cphy_0353 NC_010001.1 444624 445325 D TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: cno:NT01CX_1092 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 444624..445325 Clostridium phytofermentans ISDg 5742199 YP_001557480.1 CDS Cphy_0354 NC_010001.1 452927 453502 D KEGG: ddi:DDBDRAFT_0169480 hypothetical protein; hypothetical protein 452927..453502 Clostridium phytofermentans ISDg 5742214 YP_001557481.1 CDS Cphy_0355 NC_010001.1 453674 454273 R PFAM: protein of unknown function DUF340 membrane; KEGG: cbf:CLI_1203 hypothetical protein; hypothetical protein complement(453674..454273) Clostridium phytofermentans ISDg 5742215 YP_001557482.1 CDS Cphy_0356 NC_010001.1 454276 454560 R hypothetical protein complement(454276..454560) Clostridium phytofermentans ISDg 5742216 YP_001557483.1 CDS Cphy_0357 NC_010001.1 455633 457405 D KEGG: tte:TTE2422 hypothetical protein; hypothetical protein 455633..457405 Clostridium phytofermentans ISDg 5742217 YP_001557484.1 CDS Cphy_0358 NC_010001.1 457661 458350 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpf:CPF_1192 DNA-binding response regulator; two component transcriptional regulator 457661..458350 Clostridium phytofermentans ISDg 5742218 YP_001557485.1 CDS Cphy_0359 NC_010001.1 458494 459414 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3668 ABC transporter related; ABC transporter 458494..459414 Clostridium phytofermentans ISDg 5742219 YP_001557486.1 CDS Cphy_0360 NC_010001.1 459407 460231 D KEGG: cac:CAC2733 uncharacterized conserved membrane protein; hypothetical protein 459407..460231 Clostridium phytofermentans ISDg 5742220 YP_001557487.1 CDS Cphy_0361 NC_010001.1 460345 461238 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cbf:CLI_0866 sensor histidine kinase; histidine kinase 460345..461238 Clostridium phytofermentans ISDg 5742221 YP_001557488.1 CDS Cphy_0362 NC_010001.1 461569 463122 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BG12964 ABC transport system ATP-binding protein; ABC transporter complement(461569..463122) Clostridium phytofermentans ISDg 5742222 YP_001557489.1 CDS Cphy_0363 NC_010001.1 463437 463946 D hypothetical protein 463437..463946 Clostridium phytofermentans ISDg 5742223 YP_001557490.1 CDS Cphy_0364 NC_010001.1 464091 464651 R PFAM: GPR1/FUN34/yaaH family protein; KEGG: ypi:YpsIP31758_3467 gpr1/fun34/YaaH family protein; GPR1/FUN34/yaaH family protein complement(464091..464651) Clostridium phytofermentans ISDg 5742224 YP_001557491.1 CDS Cphy_0365 NC_010001.1 465733 466035 D PFAM: Rhodanese domain protein; KEGG: tde:TDE0839 rhodanese-like domain protein; rhodanese domain-containing protein 465733..466035 Clostridium phytofermentans ISDg 5742225 YP_001557492.1 CDS Cphy_0366 NC_010001.1 466188 467330 D PFAM: RNA methylase; KEGG: cno:NT01CX_2091 nucleic acid methylase; RNA methylase 466188..467330 Clostridium phytofermentans ISDg 5742226 YP_001557493.1 CDS Cphy_0367 NC_010001.1 467424 468344 R PFAM: alpha/beta hydrolase fold; KEGG: tde:TDE2146 hydrolase, alpha/beta fold family; alpha/beta hydrolase complement(467424..468344) Clostridium phytofermentans ISDg 5742227 YP_001557494.1 CDS Cphy_0368 NC_010001.1 468619 470043 D PFAM: cell wall hydrolase/autolysin; KEGG: csc:Csac_1532 cell wall hydrolase/autolysin; cell wall hydrolase/autolysin 468619..470043 Clostridium phytofermentans ISDg 5742228 YP_001557495.1 CDS Cphy_0369 NC_010001.1 470342 470923 D TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: cth:Cthe_0189 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 470342..470923 Clostridium phytofermentans ISDg 5742229 YP_001557496.1 CDS Cphy_0370 NC_010001.1 470940 471434 D TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: tte:TTE0621 predicted phosphoesterase; phosphodiesterase 470940..471434 Clostridium phytofermentans ISDg 5742230 YP_001557497.1 CDS Cphy_0371 NC_010001.1 472717 473262 D TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: bld:BLi00848 intracellular protease/amidase, ThiJ family; RBL01553; DJ-1 family protein 472717..473262 Clostridium phytofermentans ISDg 5742239 YP_001557498.1 CDS Cphy_0372 NC_010001.1 473354 474736 D hypothetical protein 473354..474736 Clostridium phytofermentans ISDg 5742240 YP_001557499.1 CDS Cphy_0373 NC_010001.1 474739 476121 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: dsy:DSY4985 hypothetical protein; amino acid carrier protein complement(474739..476121) Clostridium phytofermentans ISDg 5742241 YP_001557500.1 CDS Cphy_0374 NC_010001.1 476696 476917 D PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cbf:CLI_2367 small, acid-soluble spore protein; small acid-soluble spore protein alpha/beta type 476696..476917 Clostridium phytofermentans ISDg 5742242 YP_001557501.1 CDS Cphy_0375 NC_010001.1 477102 478448 D TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: bcy:Bcer98_0150 phosphoglucosamine mutase; phosphoglucosamine mutase 477102..478448 Clostridium phytofermentans ISDg 5742243 YP_001557502.1 CDS Cphy_0376 NC_010001.1 478875 480161 D TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; trigger factor domain; KEGG: cth:Cthe_2739 trigger factor; trigger factor 478875..480161 Clostridium phytofermentans ISDg 5742244 YP_001557503.1 CDS Cphy_0377 NC_010001.1 480272 480853 D KEGG: cbf:CLI_3370 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP 480272..480853 Clostridium phytofermentans ISDg 5742245 YP_001557504.1 CDS clpX NC_010001.1 480918 482219 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 480918..482219 Clostridium phytofermentans ISDg 5742246 YP_001557505.1 CDS Cphy_0379 NC_010001.1 482373 484802 D KEGG: amt:Amet_1072 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 482373..484802 Clostridium phytofermentans ISDg 5742247 YP_001557506.1 CDS Cphy_0380 NC_010001.1 485065 485670 D PFAM: GTP-binding protein HSR1-related; KEGG: cdf:CD3300 probable GTP-binding protein; GTP-binding protein HSR1-related 485065..485670 Clostridium phytofermentans ISDg 5742248 YP_001557507.1 CDS Cphy_0381 NC_010001.1 486104 487459 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pfu:PF0824 hypothetical protein; MATE efflux family protein 486104..487459 Clostridium phytofermentans ISDg 5742249 YP_001557508.1 CDS Cphy_0382 NC_010001.1 488237 489733 D PFAM: chemotaxis sensory transducer; KEGG: cbh:CLC_0609 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 488237..489733 Clostridium phytofermentans ISDg 5742250 YP_001557509.1 CDS Cphy_0383 NC_010001.1 489955 490506 R hypothetical protein complement(489955..490506) Clostridium phytofermentans ISDg 5742251 YP_001557510.1 CDS Cphy_0384 NC_010001.1 490581 491561 R PFAM: protein of unknown function DUF939; KEGG: cbh:CLC_1112 hypothetical protein; hypothetical protein complement(490581..491561) Clostridium phytofermentans ISDg 5742252 YP_001557511.1 CDS Cphy_0385 NC_010001.1 491883 494183 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bcl:ABC1143 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 491883..494183 Clostridium phytofermentans ISDg 5742253 YP_001557512.1 CDS Cphy_0386 NC_010001.1 494649 497018 D hypothetical protein 494649..497018 Clostridium phytofermentans ISDg 5742254 YP_001557513.1 CDS Cphy_0387 NC_010001.1 497116 498111 D KEGG: ckl:CKL_0518 hypothetical protein; hypothetical protein 497116..498111 Clostridium phytofermentans ISDg 5742255 YP_001557514.1 CDS Cphy_0388 NC_010001.1 498254 499144 R PFAM: oxidoreductase domain protein; KEGG: bth:BT_3586 dehydrogenase; oxidoreductase domain-containing protein complement(498254..499144) Clostridium phytofermentans ISDg 5742256 YP_001557515.1 CDS Cphy_0389 NC_010001.1 499306 500217 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: fjo:Fjoh_4335 protein of unknown function DUF6, transmembrane; hypothetical protein complement(499306..500217) Clostridium phytofermentans ISDg 5742257 YP_001557516.1 CDS Cphy_0390 NC_010001.1 500301 501620 R TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: cno:NT01CX_1200 amidohydrolase; amidohydrolase complement(500301..501620) Clostridium phytofermentans ISDg 5742258 YP_001557517.1 CDS Cphy_0391 NC_010001.1 501779 502831 R KEGG: rba:RB7999 hypothetical protein; hypothetical protein complement(501779..502831) Clostridium phytofermentans ISDg 5742259 YP_001557518.1 CDS Cphy_0392 NC_010001.1 502831 503847 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: rba:RB7998 hypothetical protein; NAD-dependent epimerase/dehydratase complement(502831..503847) Clostridium phytofermentans ISDg 5742260 YP_001557519.1 CDS Cphy_0393 NC_010001.1 504230 505210 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3119 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein 504230..505210 Clostridium phytofermentans ISDg 5742261 YP_001557520.1 CDS Cphy_0394 NC_010001.1 505226 506137 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3118 sugar ABC transporter permease; binding-protein-dependent transport systems inner membrane component 505226..506137 Clostridium phytofermentans ISDg 5742262 YP_001557521.1 CDS Cphy_0395 NC_010001.1 506211 507890 D PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC0358 multiple sugar transport system substrate-binding protein; extracellular solute-binding protein 506211..507890 Clostridium phytofermentans ISDg 5742263 YP_001557522.1 CDS Cphy_0396 NC_010001.1 507971 509302 D hypothetical protein 507971..509302 Clostridium phytofermentans ISDg 5742264 YP_001557523.1 CDS Cphy_0397 NC_010001.1 509392 510393 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sco:SCO0663 2-hydroxyacid-family dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 509392..510393 Clostridium phytofermentans ISDg 5742265 YP_001557524.1 CDS Cphy_0398 NC_010001.1 510532 511797 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bca:BCE_1902 oxidoreductase family protein; oxidoreductase domain-containing protein 510532..511797 Clostridium phytofermentans ISDg 5742266 YP_001557525.1 CDS Cphy_0399 NC_010001.1 511866 513032 D PFAM: GCN5-related N-acetyltransferase; KEGG: cpf:CPF_1025 acetyltransferase, GNAT family; N-acetyltransferase GCN5 511866..513032 Clostridium phytofermentans ISDg 5742267 YP_001557526.1 CDS Cphy_0400 NC_010001.1 513123 513443 D PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: lip:LI0589 sec-independent protein secretion pathway components; sec-independent translocation protein mttA/Hcf106 513123..513443 Clostridium phytofermentans ISDg 5742268 YP_001557527.1 CDS Cphy_0401 NC_010001.1 513617 513796 D PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pth:PTH_1709 sec-independent protein secretion pathway components; sec-independent translocation protein mttA/Hcf106 513617..513796 Clostridium phytofermentans ISDg 5742269 YP_001557528.1 CDS Cphy_0402 NC_010001.1 513786 514592 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: chy:CHY_0863 sec-independent protein translocase TatC; Sec-independent protein translocase subunit TatC 513786..514592 Clostridium phytofermentans ISDg 5742270 YP_001557529.1 CDS Cphy_0403 NC_010001.1 514812 515024 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cth:Cthe_2979 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 514812..515024 Clostridium phytofermentans ISDg 5742271 YP_001557530.1 CDS Cphy_0404 NC_010001.1 515021 515602 D KEGG: cdf:CD0628 hypothetical protein; hypothetical protein 515021..515602 Clostridium phytofermentans ISDg 5742272 YP_001557531.1 CDS Cphy_0405 NC_010001.1 515791 516495 D PFAM: polysaccharide deacetylase; KEGG: cth:Cthe_1903 polysaccharide deacetylase; polysaccharide deacetylase 515791..516495 Clostridium phytofermentans ISDg 5742273 YP_001557532.1 CDS Cphy_0406 NC_010001.1 516832 517254 R PFAM: histidine triad (HIT) protein; KEGG: cbe:Cbei_4080 histidine triad (HIT) protein; histidine triad (HIT) protein complement(516832..517254) Clostridium phytofermentans ISDg 5742274 YP_001557533.1 CDS Cphy_0407 NC_010001.1 517327 517848 R KEGG: cdf:CD3250 hypothetical protein; hypothetical protein complement(517327..517848) Clostridium phytofermentans ISDg 5742275 YP_001557534.1 CDS Cphy_0408 NC_010001.1 517863 518804 R KEGG: cno:NT01CX_1004 radical SAM protein, TIGR01212 family; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein complement(517863..518804) Clostridium phytofermentans ISDg 5745168 YP_001557535.1 CDS Cphy_0409 NC_010001.1 518974 520125 R PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: cbf:CLI_0318 malic enzyme; malate dehydrogenase complement(518974..520125) Clostridium phytofermentans ISDg 5745169 YP_001557536.1 CDS rho NC_010001.1 520544 522496 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 520544..522496 Clostridium phytofermentans ISDg 5745170 YP_001557537.1 CDS Cphy_0411 NC_010001.1 522664 522876 D PFAM: ribosomal protein L31; KEGG: bpu:BPUM_3350 ribosomal protein L31; 50S ribosomal protein L31 522664..522876 Clostridium phytofermentans ISDg 5745171 YP_001557538.1 CDS Cphy_0412 NC_010001.1 522996 524594 D PFAM: protein of unknown function DUF1385; KEGG: sth:STH72 hypothetical protein; hypothetical protein 522996..524594 Clostridium phytofermentans ISDg 5745172 YP_001557539.1 CDS Cphy_0413 NC_010001.1 524625 525464 D TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; KEGG: amt:Amet_0330 modification methylase, HemK family; protein-(glutamine-N5) methyltransferase 524625..525464 Clostridium phytofermentans ISDg 5745173 YP_001557540.1 CDS Cphy_0414 NC_010001.1 525835 526911 D TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: cdf:CD3484 peptide chain release factor 1; peptide chain release factor 1 525835..526911 Clostridium phytofermentans ISDg 5745174 YP_001557541.1 CDS Cphy_0415 NC_010001.1 527112 528479 D PFAM: cation transporter; KEGG: lsl:LSL_0068 potassium uptake protein KtrB; H(+)-transporting two-sector ATPase 527112..528479 Clostridium phytofermentans ISDg 5745175 YP_001557542.1 CDS Cphy_0416 NC_010001.1 528520 529173 D PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: cpf:CPF_2142 potassium uptake protein; TrkA domain-containing protein 528520..529173 Clostridium phytofermentans ISDg 5745176 YP_001557543.1 CDS Cphy_0417 NC_010001.1 529257 530051 D PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cth:Cthe_1222 RNA methyltransferase, TrmH family, group 3; tRNA/rRNA methyltransferase SpoU 529257..530051 Clostridium phytofermentans ISDg 5745177 YP_001557544.1 CDS Cphy_0418 NC_010001.1 530556 532223 D KEGG: ddi:DDB_0232136 villin; hypothetical protein 530556..532223 Clostridium phytofermentans ISDg 5745178 YP_001557545.1 CDS Cphy_0419 NC_010001.1 532429 533778 D PFAM: phosphoglucose isomerase (PGI); KEGG: gka:GK2924 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 532429..533778 Clostridium phytofermentans ISDg 5745179 YP_001557546.1 CDS Cphy_0420 NC_010001.1 534111 535304 D PFAM: Patatin; KEGG: amt:Amet_4656 patatin; patatin 534111..535304 Clostridium phytofermentans ISDg 5745180 YP_001557547.1 CDS Cphy_0421 NC_010001.1 535450 536388 D TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: bld:BLi04164 ornithine carbamoyltransferase; ornithine carbamoyltransferase 535450..536388 Clostridium phytofermentans ISDg 5745181 YP_001557548.1 CDS Cphy_0422 NC_010001.1 536737 537597 D KEGG: sde:Sde_3902 heavy metal efflux pump CzcA; hypothetical protein 536737..537597 Clostridium phytofermentans ISDg 5745182 YP_001557549.1 CDS Cphy_0423 NC_010001.1 537817 538140 D hypothetical protein 537817..538140 Clostridium phytofermentans ISDg 5745183 YP_001557550.1 CDS Cphy_0424 NC_010001.1 538204 538971 D TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: cth:Cthe_2588 transcriptional acitvator, Baf family; Baf family transcriptional activator 538204..538971 Clostridium phytofermentans ISDg 5745184 YP_001557551.1 CDS Cphy_0425 NC_010001.1 539001 539975 D TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: tte:TTE0344 predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family; NifR3 family TIM-barrel protein 539001..539975 Clostridium phytofermentans ISDg 5745185 YP_001557552.1 CDS Cphy_0426 NC_010001.1 540343 541431 D catalyzes the formation of aspartate semialdehyde from aspartyl phosphate; aspartate-semialdehyde dehydrogenase 540343..541431 Clostridium phytofermentans ISDg 5745186 YP_001557553.1 CDS Cphy_0427 NC_010001.1 541638 542369 R hypothetical protein complement(541638..542369) Clostridium phytofermentans ISDg 5745187 YP_001557554.1 CDS Cphy_0428 NC_010001.1 542541 544196 R hypothetical protein complement(542541..544196) Clostridium phytofermentans ISDg 5745188 YP_001557555.1 CDS Cphy_0429 NC_010001.1 544531 545874 R TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: sth:STH226 uracil permease; uracil-xanthine permease complement(544531..545874) Clostridium phytofermentans ISDg 5745189 YP_001557556.1 CDS Cphy_0430 NC_010001.1 547250 549745 D PFAM: carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: cth:Cthe_0275 glycosyltransferase 36; glycosyltransferase 547250..549745 Clostridium phytofermentans ISDg 5745190 YP_001557557.1 CDS Cphy_0431 NC_010001.1 550144 551712 D PFAM: extracellular solute-binding protein family 5; KEGG: fnu:FN1359 dipeptide-binding protein; extracellular solute-binding protein 550144..551712 Clostridium phytofermentans ISDg 5745191 YP_001557558.1 CDS Cphy_0432 NC_010001.1 551801 552742 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL0227 transmembrane component of ABC transporter; binding-protein-dependent transport systems inner membrane component 551801..552742 Clostridium phytofermentans ISDg 5745192 YP_001557559.1 CDS Cphy_0433 NC_010001.1 552764 553552 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB3067 oligopeptide ABC transporter permease; binding-protein-dependent transport systems inner membrane component 552764..553552 Clostridium phytofermentans ISDg 5745193 YP_001557560.1 CDS Cphy_0434 NC_010001.1 553633 555201 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chu:CHU_0463 ABC transporter, ATP-binding protein; ABC transporter 553633..555201 Clostridium phytofermentans ISDg 5745194 YP_001557561.1 CDS Cphy_0435 NC_010001.1 555303 555656 D KEGG: cbe:Cbei_2981 hypothetical protein; hypothetical protein 555303..555656 Clostridium phytofermentans ISDg 5745195 YP_001557562.1 CDS Cphy_0436 NC_010001.1 555968 557662 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mba:Mbar_A0989 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 555968..557662 Clostridium phytofermentans ISDg 5745196 YP_001557563.1 CDS Cphy_0437 NC_010001.1 557869 558348 D PFAM: ferric-uptake regulator; KEGG: cbf:CLI_2623 transcriptional regulator, Fur family; ferric uptake regulator family protein 557869..558348 Clostridium phytofermentans ISDg 5745197 YP_001557564.1 CDS Cphy_0438 NC_010001.1 558894 559904 D PFAM: periplasmic solute binding protein; KEGG: lmf:LMOf2365_0168 zinc ABC transporter, zinc-binding protein; periplasmic solute binding protein 558894..559904 Clostridium phytofermentans ISDg 5745198 YP_001557565.1 CDS Cphy_0439 NC_010001.1 559906 560619 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sun:SUN_1062 Mn2+/Zn2+ ABC transporter, ATP-binding protein; ABC transporter 559906..560619 Clostridium phytofermentans ISDg 5745199 YP_001557566.1 CDS Cphy_0440 NC_010001.1 560616 561461 D PFAM: ABC-3 protein; inner-membrane translocator; KEGG: gur:Gura_0048 ABC-3 protein; ABC-3 protein 560616..561461 Clostridium phytofermentans ISDg 5745200 YP_001557567.1 CDS Cphy_0441 NC_010001.1 561500 562153 D hypothetical protein 561500..562153 Clostridium phytofermentans ISDg 5745201 YP_001557568.1 CDS Cphy_0442 NC_010001.1 562582 564438 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0836 ABC-type multidrug/protein/lipid transport system, ATPase component; ABC transporter 562582..564438 Clostridium phytofermentans ISDg 5745202 YP_001557569.1 CDS Cphy_0443 NC_010001.1 564450 566216 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0835 ABC-type multidrug/protein/lipid transport system, ATPase component; ABC transporter 564450..566216 Clostridium phytofermentans ISDg 5745203 YP_001557570.1 CDS Cphy_0444 NC_010001.1 566471 567052 D PFAM: GCN5-related N-acetyltransferase; KEGG: cbe:Cbei_1948 hypothetical protein; N-acetyltransferase GCN5 566471..567052 Clostridium phytofermentans ISDg 5745204 YP_001557571.1 CDS Cphy_0445 NC_010001.1 567284 568786 D PFAM: SCP-like extracellular; KEGG: cth:Cthe_0779 copper amine oxidase-like protein; SCP-like extracellular 567284..568786 Clostridium phytofermentans ISDg 5745205 YP_001557572.1 CDS Cphy_0446 NC_010001.1 569177 570013 D PFAM: beta-lactamase domain protein; KEGG: cbf:CLI_2342 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 569177..570013 Clostridium phytofermentans ISDg 5745206 YP_001557573.1 CDS Cphy_0447 NC_010001.1 570388 570882 D TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: lsl:LSL_0495 bacterial protein translation initiation factor 3 (IF-3); translation initiation factor IF-3 570388..570882 Clostridium phytofermentans ISDg 5745207 YP_001557574.1 CDS rpmI NC_010001.1 570973 571170 D PFAM: ribosomal protein L35; KEGG: cbf:CLI_3194 ribosomal protein L35; 50S ribosomal protein L35 570973..571170 Clostridium phytofermentans ISDg 5745208 YP_001557575.1 CDS rplT NC_010001.1 571198 571554 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 571198..571554 Clostridium phytofermentans ISDg 5745209 YP_001557576.1 CDS Cphy_0450 NC_010001.1 571881 574442 D hypothetical protein 571881..574442 Clostridium phytofermentans ISDg 5745210 YP_001557577.1 CDS Cphy_0451 NC_010001.1 574524 576572 D KEGG: tet:TTHERM_00245510 Phage tail fiber repeat family protein Pfam: Drf_FH1 PROSITE: ASN_RICH HIS_RICH THR_RICH; hypothetical protein 574524..576572 Clostridium phytofermentans ISDg 5745211 YP_001557578.1 CDS Cphy_0452 NC_010001.1 576883 577551 D KEGG: cbf:CLI_0630 hypothetical protein; hypothetical protein 576883..577551 Clostridium phytofermentans ISDg 5745212 YP_001557579.1 CDS Cphy_0453 NC_010001.1 577548 578456 D KEGG: tde:TDE1862 hypothetical protein; hypothetical protein 577548..578456 Clostridium phytofermentans ISDg 5745213 YP_001557580.1 CDS Cphy_0454 NC_010001.1 578474 578797 D KEGG: dsy:DSY4222 hypothetical protein; hypothetical protein 578474..578797 Clostridium phytofermentans ISDg 5745214 YP_001557581.1 CDS Cphy_0455 NC_010001.1 579149 580342 D PFAM: aminotransferase class I and II; KEGG: cbf:CLI_1497 aminotransferase, classes I and II; class I and II aminotransferase 579149..580342 Clostridium phytofermentans ISDg 5745215 YP_001557582.1 CDS Cphy_0456 NC_010001.1 580553 581356 D KEGG: csc:Csac_1076 glycoside hydrolase, family 48; hypothetical protein 580553..581356 Clostridium phytofermentans ISDg 5745216 YP_001557583.1 CDS Cphy_0457 NC_010001.1 581798 585355 D hypothetical protein 581798..585355 Clostridium phytofermentans ISDg 5745217 YP_001557584.1 CDS Cphy_0458 NC_010001.1 585371 586633 D hypothetical protein 585371..586633 Clostridium phytofermentans ISDg 5745218 YP_001557585.1 CDS Cphy_0459 NC_010001.1 586714 587550 D hypothetical protein 586714..587550 Clostridium phytofermentans ISDg 5745219 YP_001557586.1 CDS Cphy_0460 NC_010001.1 587565 588851 D KEGG: mst:Msp_1095 DNA double-strand break repair protein Rad50; hypothetical protein 587565..588851 Clostridium phytofermentans ISDg 5745220 YP_001557587.1 CDS Cphy_0461 NC_010001.1 589088 589747 R KEGG: bha:BH0719 transcriptional regulator (TetR/AcrR family); TetR family transcriptional regulator complement(589088..589747) Clostridium phytofermentans ISDg 5745221 YP_001557588.1 CDS Cphy_0462 NC_010001.1 590029 591552 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: pdi:BDI_2305 hypothetical protein; NAD-dependent epimerase/dehydratase 590029..591552 Clostridium phytofermentans ISDg 5745222 YP_001557589.1 CDS Cphy_0463 NC_010001.1 591657 592304 R alkyl hydroperoxidase; catalyze the reduction of hydrogen peroxide to water and the reduction of alkyl hydroperoxides to the corresponding alcohols; peroxiredoxin complement(591657..592304) Clostridium phytofermentans ISDg 5745223 YP_001557590.1 CDS Cphy_0464 NC_010001.1 592816 593595 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_2657 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(592816..593595) Clostridium phytofermentans ISDg 5745224 YP_001557591.1 CDS Cphy_0465 NC_010001.1 593931 594581 D KEGG: bha:BH0709 hypothetical protein; hypothetical protein 593931..594581 Clostridium phytofermentans ISDg 5745225 YP_001557592.1 CDS Cphy_0466 NC_010001.1 594661 595767 D PFAM: oxidoreductase domain protein; KEGG: rca:Rcas_4405 oxidoreductase domain protein; oxidoreductase domain-containing protein 594661..595767 Clostridium phytofermentans ISDg 5745226 YP_001557593.1 CDS Cphy_0467 NC_010001.1 596301 597020 D KEGG: cbe:Cbei_3248 hypothetical protein; hypothetical protein 596301..597020 Clostridium phytofermentans ISDg 5745227 YP_001557594.1 CDS Cphy_0468 NC_010001.1 597010 597909 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: cpf:CPF_0871 transposase, IS605 OrfB family; IS605 family transposase OrfB 597010..597909 Clostridium phytofermentans ISDg 5745228 YP_001557595.1 CDS Cphy_0469 NC_010001.1 598077 598439 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dsy:DSY4986 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 598077..598439 Clostridium phytofermentans ISDg 5745229 YP_001557596.1 CDS Cphy_0470 NC_010001.1 598623 598913 D hypothetical protein 598623..598913 Clostridium phytofermentans ISDg 5745230 YP_001557597.1 CDS Cphy_0471 NC_010001.1 599021 599428 D hypothetical protein 599021..599428 Clostridium phytofermentans ISDg 5745231 YP_001557598.1 CDS Cphy_0472 NC_010001.1 599953 602631 D TIGRFAM: valyl-tRNA synthetase; KEGG: cth:Cthe_0324 valyl-tRNA synthetase; valyl-tRNA synthetase 599953..602631 Clostridium phytofermentans ISDg 5745232 YP_001557599.1 CDS Cphy_0473 NC_010001.1 602764 604167 D PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 protein of unknown function DUF342; hypothetical protein 602764..604167 Clostridium phytofermentans ISDg 5745233 YP_001557600.1 CDS Cphy_0474 NC_010001.1 604694 604831 D hypothetical protein 604694..604831 Clostridium phytofermentans ISDg 5745234 YP_001557601.1 CDS Cphy_0475 NC_010001.1 604922 606331 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cth:Cthe_1383 tetratricopeptide TPR_2; hypothetical protein 604922..606331 Clostridium phytofermentans ISDg 5745235 YP_001557602.1 CDS Cphy_0476 NC_010001.1 606468 606851 D TIGRFAM: anti-anti-sigma factor; anti-sigma F factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: amt:Amet_2212 anti-sigma-factor antagonist; anti-sigma-factor antagonist 606468..606851 Clostridium phytofermentans ISDg 5745236 YP_001557603.1 CDS Cphy_0477 NC_010001.1 606901 607374 D binds to sigma F preventing its association with RNA polymerase during sporulation; anti-sigma F factor 606901..607374 Clostridium phytofermentans ISDg 5745237 YP_001557604.1 CDS Cphy_0478 NC_010001.1 607410 608126 D TIGRFAM: RNA polymerase sigma-F factor; RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: amt:Amet_2214 RNA polymerase, sigma 28 subunit, FliA/WhiG family; FliA/WhiG family RNA polymerase sigma factor 607410..608126 Clostridium phytofermentans ISDg 5745238 YP_001557605.1 CDS Cphy_0479 NC_010001.1 608639 609142 D TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein; KEGG: drm:Dred_1106 SpoVA protein; stage V sporulation protein AC 608639..609142 Clostridium phytofermentans ISDg 5745239 YP_001557606.1 CDS Cphy_0480 NC_010001.1 609211 610278 D TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein; KEGG: amt:Amet_2220 stage V sporulation AD family protein; stage V sporulation protein AD 609211..610278 Clostridium phytofermentans ISDg 5745240 YP_001557607.1 CDS Cphy_0481 NC_010001.1 610291 610647 D TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein; KEGG: tte:TTE1321 sporulation protein; stage V sporulation protein AE 610291..610647 Clostridium phytofermentans ISDg 5745241 YP_001557608.1 CDS Cphy_0482 NC_010001.1 611142 611612 D KEGG: sde:Sde_3238 hypothetical protein; hypothetical protein 611142..611612 Clostridium phytofermentans ISDg 5745242 YP_001557609.1 CDS Cphy_0483 NC_010001.1 612076 612411 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: ppr:PBPRB1735 hypothetical protein; cupin 612076..612411 Clostridium phytofermentans ISDg 5745243 YP_001557610.1 CDS Cphy_0484 NC_010001.1 612448 613455 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cac:CAC0393 KDG operon repressor (gene kdgR), LacI family; LacI family transcriptional regulator 612448..613455 Clostridium phytofermentans ISDg 5745244 YP_001557611.1 CDS Cphy_0485 NC_010001.1 613468 614448 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, multiple sugar transport system permease; binding-protein-dependent transport system inner membrane protein 613468..614448 Clostridium phytofermentans ISDg 5745245 YP_001557612.1 CDS Cphy_0486 NC_010001.1 614460 615353 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3561 AlgM2, multiple sugar transport system permease; binding-protein-dependent transport system inner membrane protein 614460..615353 Clostridium phytofermentans ISDg 5745246 YP_001557613.1 CDS Cphy_0487 NC_010001.1 615427 617103 D PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_3560 AlgQ1, multiple sugar transport system substrate-binding protein; extracellular solute-binding protein 615427..617103 Clostridium phytofermentans ISDg 5745247 YP_001557614.1 CDS Cphy_0488 NC_010001.1 617267 619552 D PFAM: Heparinase II/III family protein; KEGG: atc:AGR_L_3558 hypothetical protein; heparinase II/III family protein 617267..619552 Clostridium phytofermentans ISDg 5745248 YP_001557615.1 CDS Cphy_0489 NC_010001.1 619572 621440 D PFAM: Heparinase II/III family protein; KEGG: ypi:YpsIP31758_3577 heparinase II/III-like family protein; heparinase II/III family protein 619572..621440 Clostridium phytofermentans ISDg 5745249 YP_001557616.1 CDS Cphy_0490 NC_010001.1 621481 622278 D Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 621481..622278 Clostridium phytofermentans ISDg 5743404 YP_001557617.1 CDS Cphy_0491 NC_010001.1 622395 623030 D PFAM: Ribose/galactose isomerase; KEGG: cbe:Cbei_3370 ribose/galactose isomerase; hypothetical protein 622395..623030 Clostridium phytofermentans ISDg 5743405 YP_001557618.1 CDS Cphy_0492 NC_010001.1 623046 627716 D PFAM: Peptidoglycan-binding LysM; Ig domain protein group 2 domain protein; Alginate lyase 2; KEGG: pau:PA14_41500 lyase; alginate lyase 2 623046..627716 Clostridium phytofermentans ISDg 5743406 YP_001557619.1 CDS Cphy_0493 NC_010001.1 627945 630125 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_0287 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 627945..630125 Clostridium phytofermentans ISDg 5743407 YP_001557620.1 CDS Cphy_0494 NC_010001.1 630357 631754 D PFAM: extracellular solute-binding protein family 1; KEGG: gtn:GTNG_0824 sugar transport system sugar-binding protein; extracellular solute-binding protein 630357..631754 Clostridium phytofermentans ISDg 5743408 YP_001557621.1 CDS Cphy_0495 NC_010001.1 631901 633715 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4458 histidine kinase internal region; histidine kinase internal region 631901..633715 Clostridium phytofermentans ISDg 5743409 YP_001557622.1 CDS Cphy_0496 NC_010001.1 633810 635441 D PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cbe:Cbei_4431 response regulator receiver protein; two component AraC family transcriptional regulator 633810..635441 Clostridium phytofermentans ISDg 5743410 YP_001557623.1 CDS Cphy_0497 NC_010001.1 635568 638291 R PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: cno:NT01CX_1810 penicillin-binding protein 1A/1B; glycosyl transferase family protein complement(635568..638291) Clostridium phytofermentans ISDg 5743411 YP_001557624.1 CDS Cphy_0498 NC_010001.1 638612 641344 R PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: cno:NT01CX_1810 penicillin-binding protein 1A/1B; glycosyl transferase family protein complement(638612..641344) Clostridium phytofermentans ISDg 5743412 YP_001557625.1 CDS Cphy_0499 NC_010001.1 641556 642212 R PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: gka:GK3152 hypothetical protein; hypothetical protein complement(641556..642212) Clostridium phytofermentans ISDg 5743413 YP_001557626.1 CDS Cphy_0500 NC_010001.1 642483 643010 D PFAM: VanZ family protein; KEGG: cbh:CLC_2550 VanZ family protein; VanZ family protein 642483..643010 Clostridium phytofermentans ISDg 5743414 YP_001557627.1 CDS Cphy_0501 NC_010001.1 643059 643232 R KEGG: pdi:BDI_1526 hypothetical protein; hypothetical protein complement(643059..643232) Clostridium phytofermentans ISDg 5743415 YP_001557628.1 CDS Cphy_0502 NC_010001.1 643428 644762 D PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: chy:CHY_2201 ATPase, AAA family; recombination factor protein RarA 643428..644762 Clostridium phytofermentans ISDg 5743416 YP_001557629.1 CDS Cphy_0503 NC_010001.1 644853 645194 D hypothetical protein 644853..645194 Clostridium phytofermentans ISDg 5743417 YP_001557630.1 CDS Cphy_0504 NC_010001.1 645905 646405 D PFAM: SEC-C motif domain protein; KEGG: cno:NT01CX_0951 hypothetical protein; hypothetical protein 645905..646405 Clostridium phytofermentans ISDg 5743418 YP_001557631.1 CDS Cphy_0505 NC_010001.1 646539 647039 D KEGG: bth:BT_4765 hypothetical protein; hypothetical protein 646539..647039 Clostridium phytofermentans ISDg 5743419 YP_001557632.1 CDS Cphy_0506 NC_010001.1 647014 647556 D hypothetical protein 647014..647556 Clostridium phytofermentans ISDg 5743420 YP_001557633.1 CDS Cphy_0507 NC_010001.1 648281 648649 D hypothetical protein 648281..648649 Clostridium phytofermentans ISDg 5743421 YP_001557634.1 CDS Cphy_0508 NC_010001.1 649202 649936 D hypothetical protein 649202..649936 Clostridium phytofermentans ISDg 5743422 YP_001557635.1 CDS Cphy_0509 NC_010001.1 650047 650415 R KEGG: cac:CAC1316 predicted membrane protein; membrane protein complement(650047..650415) Clostridium phytofermentans ISDg 5743423 YP_001557636.1 CDS Cphy_0510 NC_010001.1 650678 651022 R PFAM: helix-turn-helix domain protein; KEGG: chy:CHY_1697 prophage LambdaCh01, repressor protein; XRE family transcriptional regulator complement(650678..651022) Clostridium phytofermentans ISDg 5743424 YP_001557637.1 CDS Cphy_0511 NC_010001.1 651219 652691 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cth:Cthe_0806 PAS/PAC sensor hybrid histidine kinase; PAS/PAC sensor signal transduction histidine kinase 651219..652691 Clostridium phytofermentans ISDg 5743425 YP_001557638.1 CDS Cphy_0512 NC_010001.1 652706 653812 D PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: gme:Gmet_2999 response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase 652706..653812 Clostridium phytofermentans ISDg 5743426 YP_001557639.1 CDS Cphy_0513 NC_010001.1 654074 655546 D KEGG: amt:Amet_4521 hypothetical protein; hypothetical protein 654074..655546 Clostridium phytofermentans ISDg 5743427 YP_001557640.1 CDS Cphy_0514 NC_010001.1 655666 656220 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: cbe:Cbei_1302 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 655666..656220 Clostridium phytofermentans ISDg 5743428 YP_001557641.1 CDS Cphy_0515 NC_010001.1 656236 656652 D hypothetical protein 656236..656652 Clostridium phytofermentans ISDg 5743429 YP_001557642.1 CDS Cphy_0516 NC_010001.1 656934 657851 D TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: cth:Cthe_0935 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 656934..657851 Clostridium phytofermentans ISDg 5743430 YP_001557643.1 CDS Cphy_0517 NC_010001.1 657952 658692 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bha:BH2491 3-oxoacyl-(acyl-carrier protein) reductase; 3-oxoacyl-ACP reductase 657952..658692 Clostridium phytofermentans ISDg 5743431 YP_001557644.1 CDS Cphy_0518 NC_010001.1 658744 659979 D TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: cbf:CLI_3824 3-oxoacyl-(acyl-carrier-protein) synthase II; 3-oxoacyl-ACP synthase 658744..659979 Clostridium phytofermentans ISDg 5743432 YP_001557645.1 CDS Cphy_0519 NC_010001.1 660000 660431 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sgo:SGO_1691 acetyl-CoA carboxylase, biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 660000..660431 Clostridium phytofermentans ISDg 5743433 YP_001557646.1 CDS Cphy_0520 NC_010001.1 660574 660999 D TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: cbh:CLC_3575 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 660574..660999 Clostridium phytofermentans ISDg 5743434 YP_001557647.1 CDS Cphy_0521 NC_010001.1 661081 662427 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: cbf:CLI_3821 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 661081..662427 Clostridium phytofermentans ISDg 5743435 YP_001557648.1 CDS Cphy_0522 NC_010001.1 662529 663455 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: cac:CAC3569 acetyl-CoA carboxylase beta subunit; acetyl-CoA carboxylase, carboxyl transferase subunit beta 662529..663455 Clostridium phytofermentans ISDg 5743436 YP_001557649.1 CDS Cphy_0523 NC_010001.1 663483 664382 D KEGG: cac:CAC3568 acetyl-CoA carboxylase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 663483..664382 Clostridium phytofermentans ISDg 5743437 YP_001557650.1 CDS Cphy_0524 NC_010001.1 664806 665345 D PFAM: Rubrerythrin; KEGG: cdf:CD0825 rubrerythrin; rubrerythrin 664806..665345 Clostridium phytofermentans ISDg 5743438 YP_001557651.1 CDS Cphy_0525 NC_010001.1 665552 667120 R PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cpf:CPF_0555 DNA-binding response regulator, AraC family; two component AraC family transcriptional regulator complement(665552..667120) Clostridium phytofermentans ISDg 5743439 YP_001557652.1 CDS Cphy_0526 NC_010001.1 667117 668901 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4458 histidine kinase internal region; histidine kinase internal region complement(667117..668901) Clostridium phytofermentans ISDg 5743440 YP_001557653.1 CDS Cphy_0527 NC_010001.1 669186 670076 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120664 permease component of ABC transporter; binding-protein-dependent transport systems inner membrane component 669186..670076 Clostridium phytofermentans ISDg 5743441 YP_001557654.1 CDS Cphy_0528 NC_010001.1 670088 670933 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120663 permease component of ABC transporter; binding-protein-dependent transport systems inner membrane component 670088..670933 Clostridium phytofermentans ISDg 5743442 YP_001557655.1 CDS Cphy_0529 NC_010001.1 671066 672460 D PFAM: extracellular solute-binding protein family 1; KEGG: efa:EF2234 sugar ABC transporter, sugar-binding protein; extracellular solute-binding protein 671066..672460 Clostridium phytofermentans ISDg 5743443 YP_001557656.1 CDS Cphy_0530 NC_010001.1 672748 674523 D PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: sit:TM1040_3871 beta-glucuronidase; beta-galactosidase 672748..674523 Clostridium phytofermentans ISDg 5743444 YP_001557657.1 CDS Cphy_0531 NC_010001.1 674706 676121 D PFAM: glycoside hydrolase family 43; KEGG: cth:Cthe_1271 carbohydrate binding family 6; alpha-N-arabinofuranosidase 674706..676121 Clostridium phytofermentans ISDg 5743445 YP_001557658.1 CDS Cphy_0532 NC_010001.1 676231 677979 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cdf:CD2247 germination-specific protease; peptidase S8/S53 subtilisin kexin sedolisin 676231..677979 Clostridium phytofermentans ISDg 5743446 YP_001557659.1 CDS Cphy_0533 NC_010001.1 678258 679514 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cth:Cthe_2680 peptidase S41; TPR repeat-containing protein 678258..679514 Clostridium phytofermentans ISDg 5743447 YP_001557660.1 CDS Cphy_0534 NC_010001.1 679533 680795 D TIGRFAM: small GTP-binding protein; GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: tte:TTE1127 GTPases; GTP-binding protein HflX 679533..680795 Clostridium phytofermentans ISDg 5743448 YP_001557661.1 CDS Cphy_0535 NC_010001.1 681064 683466 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 681064..683466 Clostridium phytofermentans ISDg 5743449 YP_001557662.1 CDS Cphy_0536 NC_010001.1 683808 685622 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cdf:CD3625 signaling protein; diguanylate cyclase 683808..685622 Clostridium phytofermentans ISDg 5743450 YP_001557663.1 CDS Cphy_0537 NC_010001.1 685938 687008 D TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: cth:Cthe_0856 branched-chain amino acid aminotransferase; branched-chain amino acid aminotransferase 685938..687008 Clostridium phytofermentans ISDg 5743451 YP_001557664.1 CDS Cphy_0538 NC_010001.1 687149 688120 D PFAM: polysaccharide deacetylase; KEGG: ckl:CKL_0600 predicted polysaccharide deacetylase; polysaccharide deacetylase 687149..688120 Clostridium phytofermentans ISDg 5743452 YP_001557665.1 CDS Cphy_0539 NC_010001.1 688261 689655 R PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cdf:CD0551 spore cortex-lytic enzyme pre-pro-form ( spore peptidoglycan hydrolase); peptidoglycan binding domain-containing protein complement(688261..689655) Clostridium phytofermentans ISDg 5743453 YP_001557666.1 CDS Cphy_0540 NC_010001.1 690089 691351 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 690089..691351 Clostridium phytofermentans ISDg 5743454 YP_001557667.1 CDS carB NC_010001.1 691351 694551 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 691351..694551 Clostridium phytofermentans ISDg 5743455 YP_001557668.1 CDS Cphy_0542 NC_010001.1 694720 695130 R hypothetical protein complement(694720..695130) Clostridium phytofermentans ISDg 5743456 YP_001557669.1 CDS Cphy_0543 NC_010001.1 695551 698313 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cdf:CD3373 magnesium transporting ATPase, P-type; magnesium-translocating P-type ATPase complement(695551..698313) Clostridium phytofermentans ISDg 5743457 YP_001557670.1 CDS Cphy_0544 NC_010001.1 698717 699220 R PFAM: transcriptional regulator domain protein; KEGG: cdf:CD3376 transcriptional regulator; winged helix family two component response transcriptional regulator complement(698717..699220) Clostridium phytofermentans ISDg 5743458 YP_001557671.1 CDS Cphy_0545 NC_010001.1 699850 701943 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: amt:Amet_0212 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 699850..701943 Clostridium phytofermentans ISDg 5743459 YP_001557672.1 CDS Cphy_0546 NC_010001.1 702304 704553 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: amt:Amet_0212 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 702304..704553 Clostridium phytofermentans ISDg 5743460 YP_001557673.1 CDS Cphy_0547 NC_010001.1 704732 705256 D KEGG: cno:NT01CX_1843 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; adenine phosphoribosyltransferase 704732..705256 Clostridium phytofermentans ISDg 5743461 YP_001557674.1 CDS Cphy_0548 NC_010001.1 705501 707942 D KEGG: cth:Cthe_1344 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 705501..707942 Clostridium phytofermentans ISDg 5743462 YP_001557675.1 CDS Cphy_0549 NC_010001.1 708053 708703 D PFAM: beta-lactamase domain protein; KEGG: chy:CHY_2221 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 708053..708703 Clostridium phytofermentans ISDg 5743463 YP_001557676.1 CDS Cphy_0550 NC_010001.1 708704 710179 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 708704..710179 Clostridium phytofermentans ISDg 5743464 YP_001557677.1 CDS Cphy_0551 NC_010001.1 710182 710904 D KEGG: chy:CHY_1969 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 710182..710904 Clostridium phytofermentans ISDg 5743465 YP_001557678.1 CDS Cphy_0552 NC_010001.1 711008 712261 D KEGG: cbe:Cbei_1544 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; histidyl-tRNA synthetase 711008..712261 Clostridium phytofermentans ISDg 5743466 YP_001557679.1 CDS Cphy_0553 NC_010001.1 712412 714208 D TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: csc:Csac_0677 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 712412..714208 Clostridium phytofermentans ISDg 5743467 YP_001557680.1 CDS Cphy_0554 NC_010001.1 714315 714527 D PFAM: protein of unknown function DUF1294; KEGG: cbh:CLC_2171 hypothetical protein; hypothetical protein 714315..714527 Clostridium phytofermentans ISDg 5743468 YP_001557681.1 CDS Cphy_0555 NC_010001.1 714687 714887 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: amt:Amet_1627 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 714687..714887 Clostridium phytofermentans ISDg 5743469 YP_001557682.1 CDS Cphy_0556 NC_010001.1 715212 716273 D PFAM: Aldose 1-epimerase; KEGG: cbe:Cbei_4465 aldose 1-epimerase; aldose 1-epimerase 715212..716273 Clostridium phytofermentans ISDg 5743470 YP_001557683.1 CDS Cphy_0557 NC_010001.1 716430 717059 R KEGG: smu:SMU.1673 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; uracil phosphoribosyltransferase complement(716430..717059) Clostridium phytofermentans ISDg 5743471 YP_001557684.1 CDS Cphy_0558 NC_010001.1 717390 718490 D PFAM: response regulator receiver; KEGG: dar:Daro_0240 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal:Hpt; response regulator receiver protein 717390..718490 Clostridium phytofermentans ISDg 5743472 YP_001557685.1 CDS Cphy_0559 NC_010001.1 718855 719307 D hypothetical protein 718855..719307 Clostridium phytofermentans ISDg 5743473 YP_001557686.1 CDS Cphy_0560 NC_010001.1 719941 720960 D PFAM: periplasmic binding protein; KEGG: cth:Cthe_1754 periplasmic binding protein; periplasmic binding protein 719941..720960 Clostridium phytofermentans ISDg 5743474 YP_001557687.1 CDS Cphy_0561 NC_010001.1 721033 722073 D PFAM: transport system permease; ABC-3 protein; KEGG: ctc:CTC00784 iron(III) dicitrate transport system permease fecD; transport system permease 721033..722073 Clostridium phytofermentans ISDg 5743475 YP_001557688.1 CDS Cphy_0562 NC_010001.1 722075 722869 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC00783 ferric enterobactin transport ATP-binding protein fepC; ABC transporter 722075..722869 Clostridium phytofermentans ISDg 5743476 YP_001557689.1 CDS Cphy_0563 NC_010001.1 723380 725623 D PFAM: S-layer domain protein; Propeptide PepSY amd peptidase M4; KEGG: cth:Cthe_2168 propeptide, PepSY amd peptidase M4; S-layer domain-containing protein 723380..725623 Clostridium phytofermentans ISDg 5743477 YP_001557690.1 CDS Cphy_0564 NC_010001.1 726147 726944 D KEGG: sak:SAK_0197 adaptor protein; negative regulator of genetic competence sporulation and motility-like protein 726147..726944 Clostridium phytofermentans ISDg 5743478 YP_001557691.1 CDS Cphy_0565 NC_010001.1 727142 728317 R PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(727142..728317) Clostridium phytofermentans ISDg 5743479 YP_001557692.1 CDS Cphy_0566 NC_010001.1 728797 730155 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC0542 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 728797..730155 Clostridium phytofermentans ISDg 5743480 YP_001557693.1 CDS Cphy_0567 NC_010001.1 730286 731383 R KEGG: bha:BH3294 hypothetical protein; hypothetical protein complement(730286..731383) Clostridium phytofermentans ISDg 5743481 YP_001557694.1 CDS Cphy_0568 NC_010001.1 731604 732623 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: apl:APL_0819 HTH-type transcriptional repressor PurR; LacI family transcriptional regulator complement(731604..732623) Clostridium phytofermentans ISDg 5743482 YP_001557695.1 CDS Cphy_0569 NC_010001.1 733282 734193 D KEGG: cpf:CPF_1411 hypothetical protein; hypothetical protein 733282..734193 Clostridium phytofermentans ISDg 5743483 YP_001557696.1 CDS Cphy_0570 NC_010001.1 734224 735336 D KEGG: cpe:CPE1200 hypothetical protein; hypothetical protein 734224..735336 Clostridium phytofermentans ISDg 5743484 YP_001557697.1 CDS Cphy_0571 NC_010001.1 735349 736362 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: bcy:Bcer98_3965 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 735349..736362 Clostridium phytofermentans ISDg 5743485 YP_001557698.1 CDS Cphy_0572 NC_010001.1 736501 737403 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: cth:Cthe_2212 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(736501..737403) Clostridium phytofermentans ISDg 5743486 YP_001557699.1 CDS Cphy_0573 NC_010001.1 737574 738956 D PFAM: extracellular solute-binding protein family 1; KEGG: pac:PPA0085 periplasmic protein; extracellular solute-binding protein 737574..738956 Clostridium phytofermentans ISDg 5743487 YP_001557700.1 CDS Cphy_0574 NC_010001.1 739199 740089 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA0086 permease; binding-protein-dependent transport system inner membrane protein 739199..740089 Clostridium phytofermentans ISDg 5743488 YP_001557701.1 CDS Cphy_0575 NC_010001.1 740100 740978 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA0087 permease; binding-protein-dependent transport system inner membrane protein 740100..740978 Clostridium phytofermentans ISDg 5743489 YP_001557702.1 CDS Cphy_0576 NC_010001.1 740986 741162 D hypothetical protein 740986..741162 Clostridium phytofermentans ISDg 5743490 YP_001557703.1 CDS Cphy_0577 NC_010001.1 741481 743652 D PFAM: conserved hypothetical protein; KEGG: cpr:CPR_0537 conserved hypothetical protein TIGR02336; hypothetical protein 741481..743652 Clostridium phytofermentans ISDg 5743491 YP_001557704.1 CDS Cphy_0578 NC_010001.1 743784 745598 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: bld:BLi00440 ABC transporter (permease); RBL00398; histidine kinase internal region complement(743784..745598) Clostridium phytofermentans ISDg 5743492 YP_001557705.1 CDS Cphy_0579 NC_010001.1 745624 747219 R PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_0684 response regulator receiver protein; two component AraC family transcriptional regulator complement(745624..747219) Clostridium phytofermentans ISDg 5743493 YP_001557706.1 CDS Cphy_0580 NC_010001.1 747501 749027 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component; ABC transporter 747501..749027 Clostridium phytofermentans ISDg 5743494 YP_001557707.1 CDS Cphy_0581 NC_010001.1 749024 750025 D PFAM: inner-membrane translocator; KEGG: sme:SMc03000 permease ABC transporter protein; monosaccharide-transporting ATPase 749024..750025 Clostridium phytofermentans ISDg 5743495 YP_001557708.1 CDS Cphy_0582 NC_010001.1 750028 751044 D PFAM: inner-membrane translocator; KEGG: ent:Ent638_4073 inner-membrane translocator; monosaccharide-transporting ATPase 750028..751044 Clostridium phytofermentans ISDg 5743496 YP_001557709.1 CDS Cphy_0583 NC_010001.1 751114 752217 D KEGG: ret:RHE_PE00289 probable sugar ABC transporter, substrate-binding protein; sugar ABC transporter, substrate-binding protein 751114..752217 Clostridium phytofermentans ISDg 5743497 YP_001557710.1 CDS Cphy_0584 NC_010001.1 752520 754019 D KEGG: rha:RHA1_ro04091 L-arabinose isomerase; L-arabinose isomerase 752520..754019 Clostridium phytofermentans ISDg 5743498 YP_001557711.1 CDS Cphy_0585 NC_010001.1 754629 756218 D hypothetical protein 754629..756218 Clostridium phytofermentans ISDg 5743499 YP_001557712.1 CDS Cphy_0586 NC_010001.1 756187 758133 D KEGG: tva:TVAG_289620 hypothetical protein Pfam: PspA_IM30 TFIIS_M UVR DUF526 Filament FH2 DUF593; hypothetical protein 756187..758133 Clostridium phytofermentans ISDg 5743500 YP_001557713.1 CDS Cphy_0587 NC_010001.1 758138 759193 D hypothetical protein 758138..759193 Clostridium phytofermentans ISDg 5743501 YP_001557714.1 CDS Cphy_0588 NC_010001.1 759190 764469 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: ava:Ava_3253 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 759190..764469 Clostridium phytofermentans ISDg 5743502 YP_001557715.1 CDS Cphy_0589 NC_010001.1 765034 765657 D TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: surface protein from Gram-positive cocci anchor region; cell wall anchor domain-containing protein 765034..765657 Clostridium phytofermentans ISDg 5743503 YP_001557716.1 CDS Cphy_0590 NC_010001.1 765825 766865 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: gtn:GTNG_2017 transcriptional regulator; LacI family transcriptional regulator 765825..766865 Clostridium phytofermentans ISDg 5743504 YP_001557717.1 CDS Cphy_0591 NC_010001.1 767507 769447 D PFAM: protein of unknown function DUF1680; KEGG: csc:Csac_0717 protein of unknown function DUF1680; hypothetical protein 767507..769447 Clostridium phytofermentans ISDg 5743505 YP_001557718.1 CDS Cphy_0592 NC_010001.1 769518 770888 D PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC1213 sugar ABC transporter substrate-binding protein; extracellular solute-binding protein 769518..770888 Clostridium phytofermentans ISDg 5743506 YP_001557719.1 CDS Cphy_0593 NC_010001.1 771053 771979 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1214 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein 771053..771979 Clostridium phytofermentans ISDg 5743507 YP_001557720.1 CDS Cphy_0594 NC_010001.1 771976 772857 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1215 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein 771976..772857 Clostridium phytofermentans ISDg 5743508 YP_001557721.1 CDS Cphy_0595 NC_010001.1 773196 774245 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cno:NT01CX_0161 catabolite control protein A; LacI family transcriptional regulator 773196..774245 Clostridium phytofermentans ISDg 5743509 YP_001557722.1 CDS Cphy_0596 NC_010001.1 774242 775282 D PFAM: conserved hypothetical protein; KEGG: oih:OB3234 hypothetical protein; hypothetical protein 774242..775282 Clostridium phytofermentans ISDg 5743510 YP_001557723.1 CDS Cphy_0597 NC_010001.1 775387 775866 D KEGG: dsy:DSY0991 hypothetical protein; hypothetical protein 775387..775866 Clostridium phytofermentans ISDg 5743511 YP_001557724.1 CDS Cphy_0598 NC_010001.1 775882 777390 D PFAM: protein of unknown function DUF112 transmembrane; KEGG: oih:OB3268 hypothetical protein; hypothetical protein 775882..777390 Clostridium phytofermentans ISDg 5743512 YP_001557725.1 CDS Cphy_0599 NC_010001.1 777384 778535 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC0605 oxidoreductase; oxidoreductase domain-containing protein 777384..778535 Clostridium phytofermentans ISDg 5743513 YP_001557726.1 CDS Cphy_0600 NC_010001.1 778554 779642 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC3277 dehydrogenase; oxidoreductase domain-containing protein 778554..779642 Clostridium phytofermentans ISDg 5743514 YP_001557727.1 CDS Cphy_0601 NC_010001.1 779904 780683 D PFAM: polysaccharide deacetylase; KEGG: amt:Amet_1617 polysaccharide deacetylase; polysaccharide deacetylase 779904..780683 Clostridium phytofermentans ISDg 5743515 YP_001557728.1 CDS Cphy_0602 NC_010001.1 781036 781242 D KEGG: cdf:CD2245A hypothetical protein; hypothetical protein 781036..781242 Clostridium phytofermentans ISDg 5743516 YP_001557729.1 CDS Cphy_0603 NC_010001.1 781259 784795 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cdf:CD2682 pyruvate-flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 781259..784795 Clostridium phytofermentans ISDg 5743517 YP_001557730.1 CDS Cphy_0604 NC_010001.1 785091 786692 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY0350 hypothetical protein; methyl-accepting chemotaxis sensory transducer 785091..786692 Clostridium phytofermentans ISDg 5743518 YP_001557731.1 CDS Cphy_0605 NC_010001.1 787055 787765 D PFAM: chemotaxis sensory transducer; KEGG: cbe:Cbei_4772 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 787055..787765 Clostridium phytofermentans ISDg 5743519 YP_001557732.1 CDS Cphy_0606 NC_010001.1 787824 788648 D TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine phosphorylase family 2; KEGG: cdf:CD1224 purine nucleoside phosphorylase; inosine guanosine and xanthosine phosphorylase family protein 787824..788648 Clostridium phytofermentans ISDg 5743520 YP_001557733.1 CDS Cphy_0607 NC_010001.1 788898 790718 D PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: cpe:CPE0981 probable beta-N-acetylhexosaminidase; glycoside hydrolase family protein 788898..790718 Clostridium phytofermentans ISDg 5743521 YP_001557734.1 CDS Cphy_0608 NC_010001.1 791082 792257 R PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(791082..792257) Clostridium phytofermentans ISDg 5743522 YP_001557735.1 CDS Cphy_0609 NC_010001.1 792393 794711 R KEGG: gka:GK0328 hypothetical protein; hypothetical protein complement(792393..794711) Clostridium phytofermentans ISDg 5743523 YP_001557736.1 CDS Cphy_0610 NC_010001.1 795189 795758 R PFAM: regulatory protein TetR; KEGG: lin:lin0482 hypothetical protein; TetR family transcriptional regulator complement(795189..795758) Clostridium phytofermentans ISDg 5743524 YP_001557737.1 CDS Cphy_0611 NC_010001.1 796122 796259 D KEGG: oih:OB3246 hypothetical protein; hypothetical protein 796122..796259 Clostridium phytofermentans ISDg 5743525 YP_001557738.1 CDS Cphy_0612 NC_010001.1 796578 797663 R PFAM: VanZ family protein; KEGG: bcy:Bcer98_0210 VanZ family protein; VanZ family protein complement(796578..797663) Clostridium phytofermentans ISDg 5743526 YP_001557739.1 CDS Cphy_0613 NC_010001.1 798037 798591 D PFAM: chemotaxis sensory transducer; KEGG: ckl:CKL_3118 predicted methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 798037..798591 Clostridium phytofermentans ISDg 5743527 YP_001557740.1 CDS Cphy_0614 NC_010001.1 798942 800231 D PFAM: chemotaxis sensory transducer; KEGG: gur:Gura_3394 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 798942..800231 Clostridium phytofermentans ISDg 5743528 YP_001557741.1 CDS Cphy_0615 NC_010001.1 800570 801004 D hypothetical protein 800570..801004 Clostridium phytofermentans ISDg 5743529 YP_001557742.1 CDS Cphy_0616 NC_010001.1 801007 801984 D hypothetical protein 801007..801984 Clostridium phytofermentans ISDg 5743530 YP_001557743.1 CDS Cphy_0617 NC_010001.1 802351 804156 R PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4963 integral membrane sensor signal transduction histidine kinase; signal transduction histidine kinase, LytS complement(802351..804156) Clostridium phytofermentans ISDg 5743531 YP_001557744.1 CDS Cphy_0618 NC_010001.1 804146 804922 R PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: sgo:SGO_1175 response regulator; two component AraC family transcriptional regulator complement(804146..804922) Clostridium phytofermentans ISDg 5743532 YP_001557745.1 CDS Cphy_0619 NC_010001.1 805147 806538 D PFAM: extracellular solute-binding protein family 1; KEGG: amt:Amet_0896 extracellular solute-binding protein, family 1; extracellular solute-binding protein 805147..806538 Clostridium phytofermentans ISDg 5741668 YP_001557746.1 CDS Cphy_0620 NC_010001.1 806729 807646 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2403 binding-protein-dependent transport system, inner membrane component; binding-protein-dependent transport system inner membrane protein 806729..807646 Clostridium phytofermentans ISDg 5741669 YP_001557747.1 CDS Cphy_0621 NC_010001.1 807636 808505 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_0898 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 807636..808505 Clostridium phytofermentans ISDg 5741670 YP_001557748.1 CDS Cphy_0622 NC_010001.1 808851 809189 D SMART: DNA mismatch repair protein MutS domain protein; KEGG: cdf:CD3408 DNA mismatch repair protein; DNA mismatch repair protein MutS domain-containing protein 808851..809189 Clostridium phytofermentans ISDg 5741671 YP_001557749.1 CDS Cphy_0623 NC_010001.1 809475 810185 D KEGG: rba:RB3971 hypothetical protein-signal peptide and transmembrane prediction; hypothetical protein 809475..810185 Clostridium phytofermentans ISDg 5741672 YP_001557750.1 CDS Cphy_0624 NC_010001.1 810523 812793 D PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; KEGG: cth:Cthe_1838 glycoside hydrolase, family 10; endo-1,4-beta-xylanase 810523..812793 Clostridium phytofermentans ISDg 5741673 YP_001557751.1 CDS Cphy_0625 NC_010001.1 813011 813778 R PFAM: esterase; KEGG: cdf:CD2204 probable esterase; esterase complement(813011..813778) Clostridium phytofermentans ISDg 5741674 YP_001557752.1 CDS Cphy_0626 NC_010001.1 813769 814512 R KEGG: lmo:lmo2433 similar to acetylesterase; hypothetical protein complement(813769..814512) Clostridium phytofermentans ISDg 5741675 YP_001557753.1 CDS Cphy_0627 NC_010001.1 814818 815546 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pdi:BDI_1529 hypothetical protein; phosphotransferase domain-containing protein 814818..815546 Clostridium phytofermentans ISDg 5741676 YP_001557754.1 CDS Cphy_0628 NC_010001.1 815782 817113 D KEGG: csc:Csac_1211 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; glutamine synthetase, type I 815782..817113 Clostridium phytofermentans ISDg 5741677 YP_001557755.1 CDS Cphy_0629 NC_010001.1 817143 817685 D PFAM: ANTAR domain protein; KEGG: cbe:Cbei_4205 response regulator receiver and ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein 817143..817685 Clostridium phytofermentans ISDg 5741678 YP_001557756.1 CDS dapF NC_010001.1 817872 818786 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 817872..818786 Clostridium phytofermentans ISDg 5741679 YP_001557757.1 CDS Cphy_0631 NC_010001.1 818903 820117 D catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis; L,L-diaminopimelate aminotransferase 818903..820117 Clostridium phytofermentans ISDg 5741680 YP_001557758.1 CDS Cphy_0632 NC_010001.1 820360 822993 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cth:Cthe_2666 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase complement(820360..822993) Clostridium phytofermentans ISDg 5741681 YP_001557759.1 CDS Cphy_0633 NC_010001.1 823692 824708 D PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: bcz:pE33L466_0245 possible microcin immunity protein; peptidase U61 LD-carboxypeptidase A 823692..824708 Clostridium phytofermentans ISDg 5741682 YP_001557760.1 CDS Cphy_0634 NC_010001.1 825182 825424 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bth:BT_4143 iron-sulfur cluster binding protein; 4Fe-4S ferredoxin 825182..825424 Clostridium phytofermentans ISDg 5741683 YP_001557761.1 CDS Cphy_0635 NC_010001.1 825614 828028 D PFAM: sulfatase; KEGG: btl:BALH_4730 sulfatase; sulfatase 825614..828028 Clostridium phytofermentans ISDg 5741684 YP_001557762.1 CDS Cphy_0636 NC_010001.1 828528 829865 D TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: amt:Amet_3390 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 828528..829865 Clostridium phytofermentans ISDg 5741685 YP_001557763.1 CDS Cphy_0637 NC_010001.1 829957 830244 D TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: cth:Cthe_1033 glutamyl-tRNA(Gln) amidotransferase, C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C 829957..830244 Clostridium phytofermentans ISDg 5741686 YP_001557764.1 CDS Cphy_0638 NC_010001.1 830291 831775 D KEGG: cth:Cthe_1032 glutamyl-tRNA(Gln) amidotransferase, A subunit; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; glutamyl-tRNA(Gln) amidotransferase subunit A 830291..831775 Clostridium phytofermentans ISDg 5741687 YP_001557765.1 CDS Cphy_0639 NC_010001.1 831997 833433 D TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: csc:Csac_0910 glutamyl-tRNA(Gln) amidotransferase, B subunit; glutamyl-tRNA(Gln) amidotransferase subunit B 831997..833433 Clostridium phytofermentans ISDg 5741688 YP_001557766.1 CDS Cphy_0640 NC_010001.1 833739 834131 D PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 833739..834131 Clostridium phytofermentans ISDg 5741689 YP_001557767.1 CDS Cphy_0641 NC_010001.1 834256 835263 R PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: tde:TDE0027 DHH superfamily protein, subfamily 1; phosphoesterase domain-containing protein complement(834256..835263) Clostridium phytofermentans ISDg 5741690 YP_001557768.1 CDS Cphy_0642 NC_010001.1 835392 835676 R KEGG: cac:CAC3685 predicted membrane protein; membrane protein complement(835392..835676) Clostridium phytofermentans ISDg 5741691 YP_001557769.1 CDS purH NC_010001.1 836075 837631 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 836075..837631 Clostridium phytofermentans ISDg 5741692 YP_001557770.1 CDS Cphy_0644 NC_010001.1 837749 837949 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sae:NWMN_1313 major cold-shock protein CspA; cold-shock DNA-binding domain-containing protein complement(837749..837949) Clostridium phytofermentans ISDg 5741693 YP_001557771.1 CDS Cphy_0645 NC_010001.1 838382 841360 D PFAM: peptidase M16 domain protein; Peptidase M16C associated domain protein; KEGG: cbf:CLI_3481 peptidase; peptidase M16C associated domain-containing protein 838382..841360 Clostridium phytofermentans ISDg 5741694 YP_001557772.1 CDS Cphy_0646 NC_010001.1 841551 842468 D TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: bha:BH1367 GTP-binding protein (Era/ThdF family); GTP-binding protein Era 841551..842468 Clostridium phytofermentans ISDg 5741695 YP_001557773.1 CDS Cphy_0647 NC_010001.1 842815 843555 D TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: amt:Amet_3024 DNA repair protein RecO; DNA repair protein RecO 842815..843555 Clostridium phytofermentans ISDg 5743763 YP_001557774.1 CDS Cphy_0648 NC_010001.1 843851 845239 D Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 843851..845239 Clostridium phytofermentans ISDg 5743764 YP_001557775.1 CDS Cphy_0649 NC_010001.1 845450 846625 R PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(845450..846625) Clostridium phytofermentans ISDg 5743765 YP_001557776.1 CDS Cphy_0650 NC_010001.1 846752 847411 R PFAM: lipolytic protein G-D-S-L family; KEGG: csc:Csac_0779 lipolytic enzyme, G-D-S-L family; GDSL family lipase complement(846752..847411) Clostridium phytofermentans ISDg 5743766 YP_001557777.1 CDS Cphy_0651 NC_010001.1 848249 850870 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 848249..850870 Clostridium phytofermentans ISDg 5743767 YP_001557778.1 CDS Cphy_0652 NC_010001.1 850982 851158 R KEGG: bfs:BF2692 hypothetical membrane protein; hypothetical protein complement(850982..851158) Clostridium phytofermentans ISDg 5743768 YP_001557779.1 CDS Cphy_0653 NC_010001.1 851671 852957 D PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ooe:OEOE_1670 H+/gluconate symporter or related permease; citrate transporter 851671..852957 Clostridium phytofermentans ISDg 5743769 YP_001557780.1 CDS Cphy_0654 NC_010001.1 853053 855179 D PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: tte:TTE2591 N-methylhydaintoinase A; hydantoinase/oxoprolinase 853053..855179 Clostridium phytofermentans ISDg 5743770 YP_001557781.1 CDS Cphy_0655 NC_010001.1 855418 856191 D PFAM: regulatory protein GntR HTH; KEGG: cbe:Cbei_4085 transcriptional regulator, GntR family; GntR family transcriptional regulator 855418..856191 Clostridium phytofermentans ISDg 5743771 YP_001557782.1 CDS Cphy_0656 NC_010001.1 856268 857362 D KEGG: pat:Patl_3646 phosphomannose isomerase-like; phosphomannose isomerase-like protein 856268..857362 Clostridium phytofermentans ISDg 5743772 YP_001557783.1 CDS Cphy_0657 NC_010001.1 857904 858521 D PFAM: regulatory protein TetR; KEGG: tde:TDE0332 transcriptional regulator, TetR family; TetR family transcriptional regulator 857904..858521 Clostridium phytofermentans ISDg 5743773 YP_001557784.1 CDS Cphy_0658 NC_010001.1 858547 859488 D KEGG: pmy:Pmen_4204 hypothetical protein; hypothetical protein 858547..859488 Clostridium phytofermentans ISDg 5743774 YP_001557785.1 CDS Cphy_0659 NC_010001.1 859616 860446 D hypothetical protein 859616..860446 Clostridium phytofermentans ISDg 5743775 YP_001557786.1 CDS Cphy_0660 NC_010001.1 860487 861326 D PFAM: beta-lactamase domain protein; KEGG: tma:TM1295 hypothetical protein; beta-lactamase domain-containing protein 860487..861326 Clostridium phytofermentans ISDg 5743776 YP_001557787.1 CDS Cphy_0661 NC_010001.1 861319 862434 D KEGG: sus:Acid_2910 hypothetical protein; esterase/lipase-like protein 861319..862434 Clostridium phytofermentans ISDg 5743777 YP_001557788.1 CDS Cphy_0662 NC_010001.1 862473 864716 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: cth:Cthe_1256 glycoside hydrolase, family 3-like protein; glycoside hydrolase family 3 862473..864716 Clostridium phytofermentans ISDg 5743778 YP_001557789.1 CDS Cphy_0663 NC_010001.1 864876 866546 R KEGG: csc:Csac_0358 ABC-type sugar transport system periplasmic component-like protein; ABC-type sugar transport system periplasmic component-like protein complement(864876..866546) Clostridium phytofermentans ISDg 5743779 YP_001557790.1 CDS Cphy_0664 NC_010001.1 866795 867769 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein 866795..867769 Clostridium phytofermentans ISDg 5743780 YP_001557791.1 CDS Cphy_0665 NC_010001.1 867787 868674 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0362 polysaccharide ABC transporter permease; binding-protein-dependent transport systems inner membrane component 867787..868674 Clostridium phytofermentans ISDg 5743781 YP_001557792.1 CDS Cphy_0666 NC_010001.1 868759 871452 D KEGG: bvu:BVU_0177 glycoside hydrolase family 28; hypothetical protein 868759..871452 Clostridium phytofermentans ISDg 5743782 YP_001557793.1 CDS Cphy_0667 NC_010001.1 871581 872183 D PFAM: regulatory protein TetR; KEGG: sus:Acid_2363 transcriptional regulator, TetR family; TetR family transcriptional regulator 871581..872183 Clostridium phytofermentans ISDg 5743783 YP_001557794.1 CDS Cphy_0668 NC_010001.1 873253 873825 D hypothetical protein 873253..873825 Clostridium phytofermentans ISDg 5743784 YP_001557795.1 CDS Cphy_0669 NC_010001.1 873964 874098 D KEGG: bay:RBAM_036080 GalE; UDP-glucose 4-epimerase-like protein 873964..874098 Clostridium phytofermentans ISDg 5743785 YP_001557796.1 CDS Cphy_0670 NC_010001.1 874314 874826 D KEGG: pdi:BDI_2612 hypothetical protein; hypothetical protein 874314..874826 Clostridium phytofermentans ISDg 5743786 YP_001557797.1 CDS Cphy_0671 NC_010001.1 875177 876115 D PFAM: Methyltransferase type 11; KEGG: rca:Rcas_1539 magnesium protoporphyrin O-methyltransferase; methyltransferase type 11 875177..876115 Clostridium phytofermentans ISDg 5743787 YP_001557798.1 CDS Cphy_0672 NC_010001.1 876268 876849 D KEGG: ckl:CKL_2492 hypothetical protein; TetR family transcriptional regulator 876268..876849 Clostridium phytofermentans ISDg 5743788 YP_001557799.1 CDS Cphy_0673 NC_010001.1 876846 877607 D PFAM: Abortive infection protein; KEGG: cef:CE0449 hypothetical protein; abortive infection protein 876846..877607 Clostridium phytofermentans ISDg 5743789 YP_001557800.1 CDS Cphy_0674 NC_010001.1 877705 878502 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bsu:BG12132 similar to transcriptional regulator (AraC/XylS family); AraC family transcriptional regulator 877705..878502 Clostridium phytofermentans ISDg 5743790 YP_001557801.1 CDS Cphy_0675 NC_010001.1 879014 879808 D KEGG: dsy:DSY2128 hypothetical protein; hypothetical protein 879014..879808 Clostridium phytofermentans ISDg 5743791 YP_001557802.1 CDS Cphy_0676 NC_010001.1 880172 880723 D KEGG: bcz:BCZK1145 acetyltransferase, GNAT family; hypothetical protein 880172..880723 Clostridium phytofermentans ISDg 5743792 YP_001557803.1 CDS Cphy_0677 NC_010001.1 880830 883178 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: efa:EF1519 cation-transporting ATPase, E1-E2 family; P-type HAD superfamily ATPase 880830..883178 Clostridium phytofermentans ISDg 5743793 YP_001557804.1 CDS Cphy_0678 NC_010001.1 883324 883950 D PFAM: phosphoesterase PA-phosphatase related; KEGG: sep:SE1109 hypothetical protein; phosphoesterase PA-phosphatase related 883324..883950 Clostridium phytofermentans ISDg 5743794 YP_001557805.1 CDS Cphy_0679 NC_010001.1 884053 884589 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sth:STH1741 RNA polymerase ECF-type sigma factor; ECF subfamily RNA polymerase sigma-24 factor 884053..884589 Clostridium phytofermentans ISDg 5743795 YP_001557806.1 CDS Cphy_0680 NC_010001.1 884854 885786 D KEGG: ctc:CTC00666 hypothetical protein; hypothetical protein 884854..885786 Clostridium phytofermentans ISDg 5743796 YP_001557807.1 CDS Cphy_0681 NC_010001.1 885976 886977 D PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: cth:Cthe_1803 cobalamin (vitamin B12) biosynthesis CbiM protein; cobalamin (vitamin B12) biosynthesis CbiM protein 885976..886977 Clostridium phytofermentans ISDg 5743797 YP_001557808.1 CDS Cphy_0682 NC_010001.1 887062 888000 R PFAM: Urea transporter; KEGG: ssp:SSP0266 hypothetical protein; Urea transporter complement(887062..888000) Clostridium phytofermentans ISDg 5743798 YP_001557809.1 CDS Cphy_0683 NC_010001.1 888100 888924 R PFAM: Urease accessory protein UreD; KEGG: bca:BCE_3658 urease accessory protein UreD; urease accessory protein UreD complement(888100..888924) Clostridium phytofermentans ISDg 5743799 YP_001557810.1 CDS Cphy_0684 NC_010001.1 888928 889539 R TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: bca:BCE_3659 urease accessory protein UreG; urease accessory protein UreG complement(888928..889539) Clostridium phytofermentans ISDg 5743800 YP_001557811.1 CDS Cphy_0685 NC_010001.1 889606 890292 R PFAM: Urease accessory protein UreF; KEGG: gka:GK1928 urease accessory protein; urease accessory protein UreF complement(889606..890292) Clostridium phytofermentans ISDg 5743801 YP_001557812.1 CDS ureE NC_010001.1 890285 890740 R involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE complement(890285..890740) Clostridium phytofermentans ISDg 5743802 YP_001557813.1 CDS ureC NC_010001.1 890756 892468 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(890756..892468) Clostridium phytofermentans ISDg 5743803 YP_001557814.1 CDS ureB NC_010001.1 892470 892790 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta complement(892470..892790) Clostridium phytofermentans ISDg 5743804 YP_001557815.1 CDS Cphy_0689 NC_010001.1 892809 893111 R KEGG: gka:GK1932 urease gamma subunit; TIGRFAM: urease, gamma subunit; PFAM: Urease gamma subunit region; urease subunit gamma complement(892809..893111) Clostridium phytofermentans ISDg 5743805 YP_001557816.1 CDS Cphy_0690 NC_010001.1 893808 894158 D PFAM: protein of unknown function DUF156; KEGG: dsy:DSY0389 hypothetical protein; hypothetical protein 893808..894158 Clostridium phytofermentans ISDg 5743806 YP_001557817.1 CDS Cphy_0691 NC_010001.1 894200 894973 D TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cth:Cthe_1802 cobalt ABC transporter, inner membrane subunit CbiQ; cobalt ABC transporter permease 894200..894973 Clostridium phytofermentans ISDg 5743807 YP_001557818.1 CDS Cphy_0692 NC_010001.1 895224 895958 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1801 ABC transporter related protein; ABC transporter 895224..895958 Clostridium phytofermentans ISDg 5743808 YP_001557819.1 CDS Cphy_0693 NC_010001.1 896088 896864 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bfr:BF1755 hypothetical protein; endonuclease/exonuclease/phosphatase complement(896088..896864) Clostridium phytofermentans ISDg 5743809 YP_001557820.1 CDS Cphy_0694 NC_010001.1 896904 900245 R KEGG: efa:EF1239 hypothetical protein; hypothetical protein complement(896904..900245) Clostridium phytofermentans ISDg 5743810 YP_001557821.1 CDS Cphy_0695 NC_010001.1 900644 901510 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2725 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 900644..901510 Clostridium phytofermentans ISDg 5743811 YP_001557822.1 CDS Cphy_0696 NC_010001.1 901526 902437 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2724 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 901526..902437 Clostridium phytofermentans ISDg 5743812 YP_001557823.1 CDS Cphy_0697 NC_010001.1 902506 904050 D PFAM: extracellular solute-binding protein family 1; KEGG: lmf:LMOf2365_2031 ABC transporter, substrate-binding protein; extracellular solute-binding protein 902506..904050 Clostridium phytofermentans ISDg 5743813 YP_001557824.1 CDS Cphy_0698 NC_010001.1 904124 905161 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cno:NT01CX_0963 catabolite control protein A; LacI family transcriptional regulator 904124..905161 Clostridium phytofermentans ISDg 5743814 YP_001557825.1 CDS Cphy_0699 NC_010001.1 905298 907529 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: efa:EF1238 glycosyl hydrolase, family 3; glycoside hydrolase family 3 905298..907529 Clostridium phytofermentans ISDg 5743815 YP_001557826.1 CDS Cphy_0700 NC_010001.1 907805 908227 R PFAM: protein of unknown function DUF296; KEGG: ctc:CTC01209 hypothetical protein; hypothetical protein complement(907805..908227) Clostridium phytofermentans ISDg 5743816 YP_001557827.1 CDS Cphy_0701 NC_010001.1 908541 909215 D KEGG: swo:Swol_2178 hypothetical protein; hypothetical protein 908541..909215 Clostridium phytofermentans ISDg 5743817 YP_001557828.1 CDS Cphy_0702 NC_010001.1 909243 909911 D KEGG: swo:Swol_2179 hypothetical protein; hypothetical protein 909243..909911 Clostridium phytofermentans ISDg 5743818 YP_001557829.1 CDS Cphy_0703 NC_010001.1 909941 911932 D PFAM: Spore coat protein CotH; KEGG: mla:Mlab_1597 hypothetical protein; spore coat protein CotH 909941..911932 Clostridium phytofermentans ISDg 5743819 YP_001557830.1 CDS Cphy_0704 NC_010001.1 911972 912658 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE0774 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; two component transcriptional regulator 911972..912658 Clostridium phytofermentans ISDg 5743820 YP_001557831.1 CDS Cphy_0705 NC_010001.1 912662 913960 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cpf:CPF_2640 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 912662..913960 Clostridium phytofermentans ISDg 5743821 YP_001557832.1 CDS Cphy_0706 NC_010001.1 914234 914629 D PFAM: LrgA family protein; KEGG: ckl:CKL_2031 hypothetical protein; LrgA family protein 914234..914629 Clostridium phytofermentans ISDg 5743822 YP_001557833.1 CDS Cphy_0707 NC_010001.1 914626 915318 D PFAM: LrgB family protein; KEGG: cbe:Cbei_5006 LrgB family protein; LrgB family protein 914626..915318 Clostridium phytofermentans ISDg 5743823 YP_001557834.1 CDS Cphy_0708 NC_010001.1 915405 919550 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: dsy:DSY3774 hypothetical protein; DEAD/DEAH box helicase 915405..919550 Clostridium phytofermentans ISDg 5743824 YP_001557835.1 CDS Cphy_0709 NC_010001.1 919637 920515 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bcl:ABC3285 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator complement(919637..920515) Clostridium phytofermentans ISDg 5743825 YP_001557836.1 CDS Cphy_0710 NC_010001.1 920894 921913 D PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: bth:BT_0730 mRNA-binding protein; NAD-dependent epimerase/dehydratase 920894..921913 Clostridium phytofermentans ISDg 5743826 YP_001557837.1 CDS Cphy_0711 NC_010001.1 922139 924019 R PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: tde:TDE1730 glycosyl hydrolase, family 2; glycoside hydrolase family protein complement(922139..924019) Clostridium phytofermentans ISDg 5743827 YP_001557838.1 CDS Cphy_0712 NC_010001.1 924369 925250 D KEGG: cpf:CPF_0825 hypothetical protein; hypothetical protein 924369..925250 Clostridium phytofermentans ISDg 5743828 YP_001557839.1 CDS Cphy_0713 NC_010001.1 925284 926060 D PFAM: zinc/iron permease; KEGG: cbf:CLI_1259 zinc transporter, ZIP family; zinc/iron permease 925284..926060 Clostridium phytofermentans ISDg 5743829 YP_001557840.1 CDS Cphy_0714 NC_010001.1 926191 926694 D PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: tte:TTE2373 transcription elongation factor; GreA/GreB family elongation factor 926191..926694 Clostridium phytofermentans ISDg 5743830 YP_001557841.1 CDS Cphy_0715 NC_010001.1 926840 927283 D hypothetical protein 926840..927283 Clostridium phytofermentans ISDg 5743831 YP_001557842.1 CDS Cphy_0716 NC_010001.1 927316 929520 D TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: dsy:DSY2459 hypothetical protein; SecD/SecF family protein-export membrane protein 927316..929520 Clostridium phytofermentans ISDg 5743832 YP_001557843.1 CDS Cphy_0717 NC_010001.1 929781 930629 D PFAM: protein of unknown function DUF368; KEGG: cth:Cthe_2510 protein of unknown function DUF368; hypothetical protein 929781..930629 Clostridium phytofermentans ISDg 5743833 YP_001557844.1 CDS Cphy_0718 NC_010001.1 931839 932423 R KEGG: pin:Ping_0445 membrane protein involved in colicin uptake-like protein; hypothetical protein complement(931839..932423) Clostridium phytofermentans ISDg 5743834 YP_001557845.1 CDS Cphy_0719 NC_010001.1 933494 934186 R PFAM: protein of unknown function DUF421; KEGG: dsy:DSY1538 hypothetical protein; hypothetical protein complement(933494..934186) Clostridium phytofermentans ISDg 5743835 YP_001557846.1 CDS Cphy_0720 NC_010001.1 934410 934784 R KEGG: ret:RHE_PC00112 hypothetical protein; flavin-nucleotide-binding protein-like protein complement(934410..934784) Clostridium phytofermentans ISDg 5743836 YP_001557847.1 CDS Cphy_0721 NC_010001.1 934969 936231 D KEGG: rno:305567 similar to Hypothetical protein CBG23547 (predicted); hypothetical protein 934969..936231 Clostridium phytofermentans ISDg 5743837 YP_001557848.1 CDS Cphy_0722 NC_010001.1 936471 936635 D PFAM: protein of unknown function DUF1540; KEGG: cbe:Cbei_3713 protein of unknown function DUF1540; hypothetical protein 936471..936635 Clostridium phytofermentans ISDg 5743838 YP_001557849.1 CDS Cphy_0723 NC_010001.1 936761 937480 R hypothetical protein complement(936761..937480) Clostridium phytofermentans ISDg 5743839 YP_001557850.1 CDS Cphy_0724 NC_010001.1 937631 938890 R PFAM: NLP/P60 protein; SH3 type 3 domain protein; KEGG: lsa:LSA0106 hypothetical cell surface protein precursor; NLP/P60 protein complement(937631..938890) Clostridium phytofermentans ISDg 5743840 YP_001557851.1 CDS Cphy_0725 NC_010001.1 939094 940941 R hypothetical protein complement(939094..940941) Clostridium phytofermentans ISDg 5743841 YP_001557852.1 CDS Cphy_0726 NC_010001.1 941104 941436 D PFAM: arsenate reductase and related; KEGG: cno:NT01CX_2298 arsenate reductase-like protein; arsenate reductase 941104..941436 Clostridium phytofermentans ISDg 5743842 YP_001557853.1 CDS Cphy_0727 NC_010001.1 941610 942236 D PFAM: protein of unknown function DUF161; KEGG: cbe:Cbei_3126 membrane -like protein; hypothetical protein 941610..942236 Clostridium phytofermentans ISDg 5743843 YP_001557854.1 CDS Cphy_0728 NC_010001.1 942250 942648 R hypothetical protein complement(942250..942648) Clostridium phytofermentans ISDg 5743844 YP_001557855.1 CDS Cphy_0729 NC_010001.1 943159 943824 R TIGRFAM: proton-coupled thiamine transporter YuaJ; PFAM: Beta tubulin, autoregulation binding site; KEGG: tte:TTE2512 hypothetical protein; proton-coupled thiamine transporter YuaJ complement(943159..943824) Clostridium phytofermentans ISDg 5743845 YP_001557856.1 CDS Cphy_0730 NC_010001.1 944280 945086 R SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_4501 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator complement(944280..945086) Clostridium phytofermentans ISDg 5743846 YP_001557857.1 CDS Cphy_0731 NC_010001.1 945272 946234 D PFAM: transport system permease; KEGG: bcl:ABC2895 enterochelin ABC transporter permease; transport system permease 945272..946234 Clostridium phytofermentans ISDg 5743847 YP_001557858.1 CDS Cphy_0732 NC_010001.1 946231 947199 D PFAM: transport system permease; KEGG: bcy:Bcer98_0360 transport system permease; transport system permease 946231..947199 Clostridium phytofermentans ISDg 5743848 YP_001557859.1 CDS Cphy_0733 NC_010001.1 947196 947954 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_0361 ABC transporter-related protein; ABC transporter 947196..947954 Clostridium phytofermentans ISDg 5743849 YP_001557860.1 CDS Cphy_0734 NC_010001.1 948342 949388 D PFAM: periplasmic binding protein; KEGG: bcy:Bcer98_0362 periplasmic binding protein; periplasmic binding protein 948342..949388 Clostridium phytofermentans ISDg 5743850 YP_001557861.1 CDS Cphy_0735 NC_010001.1 949585 950220 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: dsy:DSY1195 hypothetical protein; redoxin domain-containing protein complement(949585..950220) Clostridium phytofermentans ISDg 5743851 YP_001557862.1 CDS Cphy_0736 NC_010001.1 950367 951035 R PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dsy:DSY1196 probable cytochrome c biogenesis protein CcdA; cytochrome c biogenesis protein transmembrane region complement(950367..951035) Clostridium phytofermentans ISDg 5743852 YP_001557863.1 CDS Cphy_0737 NC_010001.1 951365 951799 D PFAM: Rhodanese domain protein; KEGG: cbh:CLC_1184 phage shock protein; rhodanese domain-containing protein 951365..951799 Clostridium phytofermentans ISDg 5743853 YP_001557864.1 CDS Cphy_0738 NC_010001.1 951910 952290 R PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: cbe:Cbei_0557 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(951910..952290) Clostridium phytofermentans ISDg 5743854 YP_001557865.1 CDS Cphy_0739 NC_010001.1 952692 953006 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dsy:DSY2429 hypothetical protein; thioredoxin 952692..953006 Clostridium phytofermentans ISDg 5743855 YP_001557866.1 CDS Cphy_0740 NC_010001.1 953159 953833 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: cdf:CD0629 transcriptional regulator; Crp/FNR family transcriptional regulator complement(953159..953833) Clostridium phytofermentans ISDg 5743856 YP_001557867.1 CDS Cphy_0741 NC_010001.1 954274 956016 D TIGRFAM: pyruvate kinase; PFAM: PEP-utilising protein mobile region; Pyruvate kinase barrel; Pyruvate kinase alpha/beta; KEGG: csc:Csac_1831 pyruvate kinase; pyruvate kinase 954274..956016 Clostridium phytofermentans ISDg 5743857 YP_001557868.1 CDS Cphy_0742 NC_010001.1 956207 956944 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: lmf:LMOf2365_2658 DNA-binding response regulator KdpE; two component transcriptional regulator complement(956207..956944) Clostridium phytofermentans ISDg 5743858 YP_001557869.1 CDS Cphy_0743 NC_010001.1 957026 958054 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dsy:DSY4737 hypothetical protein; integral membrane sensor signal transduction histidine kinase complement(957026..958054) Clostridium phytofermentans ISDg 5743859 YP_001557870.1 CDS Cphy_0744 NC_010001.1 958422 960350 D KEGG: csc:Csac_0633 ATP-dependent endonuclease of the OLD family-like protein; ATP-dependent OLD family endonuclease 958422..960350 Clostridium phytofermentans ISDg 5743860 YP_001557871.1 CDS Cphy_0745 NC_010001.1 960533 961483 D PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: cbe:Cbei_2532 peptidase U61, LD-carboxypeptidase A; peptidase U61 LD-carboxypeptidase A 960533..961483 Clostridium phytofermentans ISDg 5743861 YP_001557872.1 CDS Cphy_0746 NC_010001.1 961569 962723 D PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: cth:Cthe_0898 metal dependent phosphohydrolase; metal dependent phosphohydrolase 961569..962723 Clostridium phytofermentans ISDg 5743862 YP_001557873.1 CDS Cphy_0747 NC_010001.1 962917 963900 D TIGRFAM: C_GCAxxG_C_C family protein; PFAM: GCN5-related N-acetyltransferase; KEGG: bcl:ABC4050 hypothetical protein; C_GCAxxG_C_C family protein 962917..963900 Clostridium phytofermentans ISDg 5743863 YP_001557874.1 CDS Cphy_0748 NC_010001.1 964360 966318 D TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: cbe:Cbei_0293 threonyl-tRNA synthetase; threonyl-tRNA synthetase 964360..966318 Clostridium phytofermentans ISDg 5743864 YP_001557875.1 CDS Cphy_0749 NC_010001.1 966486 968486 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbf:CLI_0474 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 966486..968486 Clostridium phytofermentans ISDg 5743865 YP_001557876.1 CDS Cphy_0750 NC_010001.1 968580 969635 D PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; KEGG: cth:Cthe_2739 trigger factor; peptidylprolyl isomerase FKBP-type 968580..969635 Clostridium phytofermentans ISDg 5743866 YP_001557877.1 CDS Cphy_0751 NC_010001.1 969857 971278 D PFAM: GerA spore germination protein; KEGG: cpe:CPE0984 stage V sporulation protein AF; GerA spore germination protein 969857..971278 Clostridium phytofermentans ISDg 5743867 YP_001557878.1 CDS deoD NC_010001.1 971491 972207 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 971491..972207 Clostridium phytofermentans ISDg 5743868 YP_001557879.1 CDS Cphy_0753 NC_010001.1 972312 973007 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 972312..973007 Clostridium phytofermentans ISDg 5743869 YP_001557880.1 CDS Cphy_0754 NC_010001.1 973056 973583 D TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; Cytidine and deoxycytidylate deaminase zinc-binding domain protein; KEGG: cth:Cthe_1582 cytidine deaminase; cytidine deaminase 973056..973583 Clostridium phytofermentans ISDg 5743870 YP_001557881.1 CDS Cphy_0755 NC_010001.1 973946 975109 D PFAM: basic membrane lipoprotein; KEGG: dsy:DSY1171 hypothetical protein; basic membrane lipoprotein 973946..975109 Clostridium phytofermentans ISDg 5743871 YP_001557882.1 CDS Cphy_0756 NC_010001.1 975211 976740 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1170 hypothetical protein; ABC transporter 975211..976740 Clostridium phytofermentans ISDg 5743872 YP_001557883.1 CDS Cphy_0757 NC_010001.1 976744 978171 D PFAM: inner-membrane translocator; KEGG: dsy:DSY1169 hypothetical protein; inner-membrane translocator 976744..978171 Clostridium phytofermentans ISDg 5743873 YP_001557884.1 CDS Cphy_0758 NC_010001.1 978171 979124 D PFAM: inner-membrane translocator; KEGG: dsy:DSY1168 hypothetical protein; inner-membrane translocator 978171..979124 Clostridium phytofermentans ISDg 5743874 YP_001557885.1 CDS Cphy_0759 NC_010001.1 979218 980723 R PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: fnu:FN0061 thermostable carboxypeptidase 1; carboxypeptidase Taq complement(979218..980723) Clostridium phytofermentans ISDg 5743875 YP_001557886.1 CDS Cphy_0760 NC_010001.1 981285 982148 D PFAM: protein of unknown function DUF161; KEGG: cbe:Cbei_3252 protein of unknown function DUF161; hypothetical protein 981285..982148 Clostridium phytofermentans ISDg 5743876 YP_001557887.1 CDS Cphy_0761 NC_010001.1 982643 983851 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 982643..983851 Clostridium phytofermentans ISDg 5743877 YP_001557888.1 CDS Cphy_0762 NC_010001.1 983970 985172 D hypothetical protein 983970..985172 Clostridium phytofermentans ISDg 5743878 YP_001557889.1 CDS Cphy_0763 NC_010001.1 985767 986411 D hypothetical protein 985767..986411 Clostridium phytofermentans ISDg 5743881 YP_001557890.1 CDS Cphy_0764 NC_010001.1 986994 988166 D PFAM: basic membrane lipoprotein; KEGG: cno:NT01CX_0401 membrane protein, Bmp family; basic membrane lipoprotein 986994..988166 Clostridium phytofermentans ISDg 5743882 YP_001557891.1 CDS Cphy_0765 NC_010001.1 988605 990140 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0400 ABC transporter, ATP-binding protein; ABC transporter 988605..990140 Clostridium phytofermentans ISDg 5743883 YP_001557892.1 CDS Cphy_0766 NC_010001.1 990133 991233 D PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0399 branched-chain amino acid transport system / permease component; inner-membrane translocator 990133..991233 Clostridium phytofermentans ISDg 5743884 YP_001557893.1 CDS Cphy_0767 NC_010001.1 991233 992192 D PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0398 branched-chain amino acid transport system / permease component; inner-membrane translocator 991233..992192 Clostridium phytofermentans ISDg 5743885 YP_001557894.1 CDS Cphy_0768 NC_010001.1 992375 993160 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: cbe:Cbei_4358 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(992375..993160) Clostridium phytofermentans ISDg 5743886 YP_001557895.1 CDS Cphy_0769 NC_010001.1 993285 994607 D PFAM: glycoside hydrolase family 4; KEGG: cbe:Cbei_4359 glycoside hydrolase, family 4; glycoside hydrolase family protein 993285..994607 Clostridium phytofermentans ISDg 5743887 YP_001557896.1 CDS Cphy_0770 NC_010001.1 994704 995759 D KEGG: fjo:Fjoh_4231 hypothetical protein; hypothetical protein 994704..995759 Clostridium phytofermentans ISDg 5745250 YP_001557897.1 CDS Cphy_0771 NC_010001.1 995811 996878 D PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bsu:BG12848 two-component response regulator. potential cognate sensor kinase is YesM; two component AraC family transcriptional regulator 995811..996878 Clostridium phytofermentans ISDg 5745251 YP_001557898.1 CDS Cphy_0772 NC_010001.1 996904 998826 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: bld:BLi00440 ABC transporter (permease); RBL00398; integral membrane sensor signal transduction histidine kinase 996904..998826 Clostridium phytofermentans ISDg 5745252 YP_001557899.1 CDS Cphy_0773 NC_010001.1 999105 1000040 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB2090 hypothetical conserved protein; binding-protein-dependent transport system inner membrane protein 999105..1000040 Clostridium phytofermentans ISDg 5745253 YP_001557900.1 CDS Cphy_0774 NC_010001.1 1000095 1000940 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0481 ABC transporter (permiase); binding-protein-dependent transport systems inner membrane component 1000095..1000940 Clostridium phytofermentans ISDg 5745254 YP_001557901.1 CDS Cphy_0775 NC_010001.1 1001005 1002576 D PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC1144 sugar ABC transporter substrate-binding protein; extracellular solute-binding protein 1001005..1002576 Clostridium phytofermentans ISDg 5745255 YP_001557902.1 CDS Cphy_0776 NC_010001.1 1002623 1003717 D PFAM: glycosyl hydrolase family 88; KEGG: bcl:ABC3274 unsaturated glucuronyl hydrolase; glycosyl hydrolase family protein 1002623..1003717 Clostridium phytofermentans ISDg 5745256 YP_001557903.1 CDS Cphy_0777 NC_010001.1 1003733 1004680 D hypothetical protein 1003733..1004680 Clostridium phytofermentans ISDg 5745257 YP_001557904.1 CDS Cphy_0778 NC_010001.1 1004791 1005084 D KEGG: ppd:Ppro_2620 beta-lactamase domain protein; beta-lactamase domain-containing protein 1004791..1005084 Clostridium phytofermentans ISDg 5745258 YP_001557905.1 CDS Cphy_0779 NC_010001.1 1005379 1006206 D TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: bfs:BF0163 haloacid dehalogenase-like hydrolase; cof family hydrolase 1005379..1006206 Clostridium phytofermentans ISDg 5745259 YP_001557906.1 CDS Cphy_0780 NC_010001.1 1006228 1006698 R KEGG: cbe:Cbei_3228 hypothetical protein; hypothetical protein complement(1006228..1006698) Clostridium phytofermentans ISDg 5745260 YP_001557907.1 CDS Cphy_0781 NC_010001.1 1006946 1007644 R PFAM: protein of unknown function DUF955; KEGG: cbe:Cbei_3960 protein of unknown function DUF955; hypothetical protein complement(1006946..1007644) Clostridium phytofermentans ISDg 5745261 YP_001557908.1 CDS Cphy_0782 NC_010001.1 1007660 1007986 R PFAM: helix-turn-helix domain protein; KEGG: bce:BC3704 LexA repressor; XRE family transcriptional regulator complement(1007660..1007986) Clostridium phytofermentans ISDg 5745262 YP_001557909.1 CDS Cphy_0783 NC_010001.1 1008212 1008709 D KEGG: drm:Dred_2611 hypothetical protein; hypothetical protein 1008212..1008709 Clostridium phytofermentans ISDg 5745263 YP_001557910.1 CDS Cphy_0784 NC_010001.1 1009795 1010211 D hypothetical protein 1009795..1010211 Clostridium phytofermentans ISDg 5745264 YP_001557911.1 CDS Cphy_0785 NC_010001.1 1010397 1011677 D KEGG: cdf:CD2910 phage protein; phage protein 1010397..1011677 Clostridium phytofermentans ISDg 5745265 YP_001557912.1 CDS Cphy_0786 NC_010001.1 1011690 1012169 D KEGG: cdf:CD2909 phage protein; phage protein 1011690..1012169 Clostridium phytofermentans ISDg 5745266 YP_001557913.1 CDS Cphy_0787 NC_010001.1 1012405 1012833 D PFAM: XkdN-like protein; KEGG: cdf:CD2908 phage protein; XkdN-like protein 1012405..1012833 Clostridium phytofermentans ISDg 5745267 YP_001557914.1 CDS Cphy_0788 NC_010001.1 1013019 1015619 D TIGRFAM: phage tape measure protein; KEGG: cth:Cthe_2488 phage tape measure protein; phage tape measure protein 1013019..1015619 Clostridium phytofermentans ISDg 5745268 YP_001557915.1 CDS Cphy_0789 NC_010001.1 1015630 1016487 D PFAM: Peptidoglycan-binding LysM; KEGG: cdf:CD2904 phage cell wall hydrolase; peptidoglycan-binding LysM 1015630..1016487 Clostridium phytofermentans ISDg 5745269 YP_001557916.1 CDS Cphy_0790 NC_010001.1 1016502 1017458 D KEGG: cdf:CD2903 phage cell wall hydrolase; phage cell wall hydrolase 1016502..1017458 Clostridium phytofermentans ISDg 5745270 YP_001557917.1 CDS Cphy_0791 NC_010001.1 1017451 1017768 D KEGG: dsy:DSY3951 hypothetical protein; hypothetical protein 1017451..1017768 Clostridium phytofermentans ISDg 5745271 YP_001557918.1 CDS Cphy_0792 NC_010001.1 1017765 1018157 D KEGG: cdf:CD2901 phage protein; phage protein 1017765..1018157 Clostridium phytofermentans ISDg 5745272 YP_001557919.1 CDS Cphy_0793 NC_010001.1 1018157 1019230 D KEGG: cdf:CD2900 phage tail protein; phage tail protein 1018157..1019230 Clostridium phytofermentans ISDg 5745273 YP_001557920.1 CDS Cphy_0794 NC_010001.1 1019220 1019759 D KEGG: cdf:CD2899 phage protein; hypothetical protein 1019220..1019759 Clostridium phytofermentans ISDg 5745274 YP_001557921.1 CDS Cphy_0795 NC_010001.1 1019764 1020864 D hypothetical protein 1019764..1020864 Clostridium phytofermentans ISDg 5745275 YP_001557922.1 CDS Cphy_0796 NC_010001.1 1020876 1022141 D hypothetical protein 1020876..1022141 Clostridium phytofermentans ISDg 5745276 YP_001557923.1 CDS Cphy_0797 NC_010001.1 1022153 1022530 D hypothetical protein 1022153..1022530 Clostridium phytofermentans ISDg 5745277 YP_001557924.1 CDS Cphy_0798 NC_010001.1 1022767 1023249 D TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: bha:BH0965 unknown conserved protein; toxin secretion/phage lysis holin 1022767..1023249 Clostridium phytofermentans ISDg 5745278 YP_001557925.1 CDS Cphy_0799 NC_010001.1 1023242 1023892 D KEGG: dsy:DSY4643 hypothetical protein; hypothetical protein 1023242..1023892 Clostridium phytofermentans ISDg 5745279 YP_001557926.1 CDS Cphy_0800 NC_010001.1 1024017 1024262 R hypothetical protein complement(1024017..1024262) Clostridium phytofermentans ISDg 5745280 YP_001557927.1 CDS Cphy_0801 NC_010001.1 1024756 1025178 D hypothetical protein 1024756..1025178 Clostridium phytofermentans ISDg 5745281 YP_001557928.1 CDS Cphy_0802 NC_010001.1 1025368 1026192 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: drm:Dred_1834 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1025368..1026192) Clostridium phytofermentans ISDg 5745282 YP_001557929.1 CDS Cphy_0803 NC_010001.1 1026189 1026971 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbf:CLI_3310 ABC transporter, ATP-binding protein; ABC transporter complement(1026189..1026971) Clostridium phytofermentans ISDg 5745283 YP_001557930.1 CDS Cphy_0804 NC_010001.1 1028119 1029336 D KEGG: mac:MA3471 hypothetical protein; hypothetical protein 1028119..1029336 Clostridium phytofermentans ISDg 5745284 YP_001557931.1 CDS Cphy_0805 NC_010001.1 1029458 1031935 D PFAM: extracellular solute-binding protein family 5; KEGG: bcy:Bcer98_0219 extracellular solute-binding protein family 5; extracellular solute-binding protein 1029458..1031935 Clostridium phytofermentans ISDg 5745285 YP_001557932.1 CDS Cphy_0806 NC_010001.1 1032036 1033040 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC0177 oligopeptide transport permease; binding-protein-dependent transport system inner membrane protein 1032036..1033040 Clostridium phytofermentans ISDg 5745286 YP_001557933.1 CDS Cphy_0807 NC_010001.1 1033053 1034102 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE2524 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; binding-protein-dependent transport system inner membrane protein 1033053..1034102 Clostridium phytofermentans ISDg 5745287 YP_001557934.1 CDS Cphy_0808 NC_010001.1 1034115 1035296 D KEGG: cpr:CPR_2255 oligopeptide ABC transporter, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1034115..1035296 Clostridium phytofermentans ISDg 5745288 YP_001557935.1 CDS Cphy_0809 NC_010001.1 1035289 1036257 D KEGG: cac:CAC0180 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1035289..1036257 Clostridium phytofermentans ISDg 5745289 YP_001557936.1 CDS Cphy_0810 NC_010001.1 1036632 1036952 D hypothetical protein 1036632..1036952 Clostridium phytofermentans ISDg 5745290 YP_001557937.1 CDS Cphy_0811 NC_010001.1 1037328 1037885 D hypothetical protein 1037328..1037885 Clostridium phytofermentans ISDg 5745291 YP_001557938.1 CDS Cphy_0812 NC_010001.1 1038064 1040445 D PFAM: extracellular solute-binding protein family 5; KEGG: tte:TTE2522 ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components; extracellular solute-binding protein 1038064..1040445 Clostridium phytofermentans ISDg 5745292 YP_001557939.1 CDS Cphy_0813 NC_010001.1 1040714 1041700 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC0177 oligopeptide transport permease; binding-protein-dependent transport system inner membrane protein 1040714..1041700 Clostridium phytofermentans ISDg 5745293 YP_001557940.1 CDS Cphy_0814 NC_010001.1 1041784 1043595 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_2256 oligopeptide ABC transporter, permease component; binding-protein-dependent transport system inner membrane protein 1041784..1043595 Clostridium phytofermentans ISDg 5745294 YP_001557941.1 CDS Cphy_0815 NC_010001.1 1043605 1044765 D KEGG: cpr:CPR_2255 oligopeptide ABC transporter, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1043605..1044765 Clostridium phytofermentans ISDg 5745295 YP_001557942.1 CDS Cphy_0816 NC_010001.1 1044767 1045786 D KEGG: tte:TTE2526 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1044767..1045786 Clostridium phytofermentans ISDg 5745296 YP_001557943.1 CDS Cphy_0817 NC_010001.1 1046130 1046675 D hypothetical protein 1046130..1046675 Clostridium phytofermentans ISDg 5745297 YP_001557944.1 CDS Cphy_0818 NC_010001.1 1047126 1048745 D PFAM: Radical SAM domain protein; KEGG: dsy:DSY2535 hypothetical protein; radical SAM domain-containing protein 1047126..1048745 Clostridium phytofermentans ISDg 5745298 YP_001557945.1 CDS Cphy_0819 NC_010001.1 1048941 1049783 D KEGG: drm:Dred_1283 hypothetical protein; hypothetical protein 1048941..1049783 Clostridium phytofermentans ISDg 5745299 YP_001557946.1 CDS Cphy_0820 NC_010001.1 1049776 1050588 D KEGG: cbf:CLI_1135 hypothetical protein; hypothetical protein 1049776..1050588 Clostridium phytofermentans ISDg 5745300 YP_001557947.1 CDS Cphy_0821 NC_010001.1 1050649 1050906 D KEGG: ddi:DDBDRAFT_0186922 hypothetical protein; hypothetical protein 1050649..1050906 Clostridium phytofermentans ISDg 5745301 YP_001557948.1 CDS Cphy_0822 NC_010001.1 1050966 1052156 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tte:TTE1983 predicted phosphatase/phosphohexomutase; HAD family hydrolase complement(1050966..1052156) Clostridium phytofermentans ISDg 5745302 YP_001557949.1 CDS Cphy_0823 NC_010001.1 1052389 1052733 D KEGG: cbe:Cbei_4812 hypothetical protein; hypothetical protein 1052389..1052733 Clostridium phytofermentans ISDg 5741696 YP_001557950.1 CDS Cphy_0824 NC_010001.1 1052739 1053182 R KEGG: cth:Cthe_0359 hypothetical protein; hypothetical protein complement(1052739..1053182) Clostridium phytofermentans ISDg 5741697 YP_001557951.1 CDS Cphy_0825 NC_010001.1 1053497 1053994 D PFAM: adenylate cyclase; KEGG: pdi:BDI_3761 hypothetical protein; adenylate cyclase 1053497..1053994 Clostridium phytofermentans ISDg 5741698 YP_001557952.1 CDS Cphy_0826 NC_010001.1 1054316 1055650 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1054316..1055650 Clostridium phytofermentans ISDg 5741699 YP_001557953.1 CDS Cphy_0827 NC_010001.1 1055896 1057131 R PFAM: Spore germination protein; KEGG: ctc:CTC01778 spore germination protein KB; spore germination protein complement(1055896..1057131) Clostridium phytofermentans ISDg 5741700 YP_001557954.1 CDS Cphy_0828 NC_010001.1 1057121 1058326 R KEGG: ctc:CTC01777 spore germination protein KC; hypothetical protein complement(1057121..1058326) Clostridium phytofermentans ISDg 5741701 YP_001557955.1 CDS Cphy_0829 NC_010001.1 1058365 1059843 R PFAM: GerA spore germination protein; KEGG: ctc:CTC01776 spore germination protein KA; GerA spore germination protein complement(1058365..1059843) Clostridium phytofermentans ISDg 5741702 YP_001557956.1 CDS Cphy_0830 NC_010001.1 1060164 1061153 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: dsy:DSY1195 hypothetical protein; redoxin domain-containing protein complement(1060164..1061153) Clostridium phytofermentans ISDg 5741703 YP_001557957.1 CDS Cphy_0831 NC_010001.1 1061183 1061857 R PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dsy:DSY1196 probable cytochrome c biogenesis protein CcdA; cytochrome c biogenesis protein transmembrane region complement(1061183..1061857) Clostridium phytofermentans ISDg 5741704 YP_001557958.1 CDS Cphy_0832 NC_010001.1 1062345 1063100 R PFAM: protein of unknown function DUF218; KEGG: cno:NT01CX_1576 hypothetical protein; hypothetical protein complement(1062345..1063100) Clostridium phytofermentans ISDg 5741705 YP_001557959.1 CDS Cphy_0833 NC_010001.1 1063868 1064716 D hypothetical protein 1063868..1064716 Clostridium phytofermentans ISDg 5741706 YP_001557960.1 CDS Cphy_0834 NC_010001.1 1064721 1065623 D hypothetical protein 1064721..1065623 Clostridium phytofermentans ISDg 5741707 YP_001557961.1 CDS Cphy_0835 NC_010001.1 1065620 1066297 D hypothetical protein 1065620..1066297 Clostridium phytofermentans ISDg 5741708 YP_001557962.1 CDS Cphy_0836 NC_010001.1 1066299 1067153 D hypothetical protein 1066299..1067153 Clostridium phytofermentans ISDg 5741709 YP_001557963.1 CDS Cphy_0837 NC_010001.1 1067143 1068885 D SMART: AAA ATPase; KEGG: hdu:HD1304 tight adherence protein A; ATPase AAA 1067143..1068885 Clostridium phytofermentans ISDg 5741710 YP_001557964.1 CDS Cphy_0838 NC_010001.1 1068882 1070417 D hypothetical protein 1068882..1070417 Clostridium phytofermentans ISDg 5741711 YP_001557965.1 CDS Cphy_0839 NC_010001.1 1070451 1070855 D hypothetical protein 1070451..1070855 Clostridium phytofermentans ISDg 5741712 YP_001557966.1 CDS Cphy_0840 NC_010001.1 1071166 1071606 D hypothetical protein 1071166..1071606 Clostridium phytofermentans ISDg 5741713 YP_001557967.1 CDS Cphy_0841 NC_010001.1 1071887 1072348 D hypothetical protein 1071887..1072348 Clostridium phytofermentans ISDg 5741714 YP_001557968.1 CDS Cphy_0842 NC_010001.1 1072350 1072832 D hypothetical protein 1072350..1072832 Clostridium phytofermentans ISDg 5741715 YP_001557969.1 CDS Cphy_0843 NC_010001.1 1072878 1074005 D hypothetical protein 1072878..1074005 Clostridium phytofermentans ISDg 5741716 YP_001557970.1 CDS Cphy_0844 NC_010001.1 1074172 1075491 D hypothetical protein 1074172..1075491 Clostridium phytofermentans ISDg 5741717 YP_001557971.1 CDS Cphy_0845 NC_010001.1 1075493 1079431 D hypothetical protein 1075493..1079431 Clostridium phytofermentans ISDg 5741718 YP_001557972.1 CDS Cphy_0847 NC_010001.1 1081497 1082285 D KEGG: cth:Cthe_2278 extracellular solute-binding protein, family 3; amino acid ABC transporter periplasmic protein 1081497..1082285 Clostridium phytofermentans ISDg 5741719 YP_001557973.1 CDS Cphy_0848 NC_010001.1 1082551 1083258 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shw:Sputw3181_0917 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 1082551..1083258 Clostridium phytofermentans ISDg 5741720 YP_001557974.1 CDS Cphy_0849 NC_010001.1 1083248 1083991 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1675 ABC transporter related; ABC transporter 1083248..1083991 Clostridium phytofermentans ISDg 5741721 YP_001557975.1 CDS Cphy_0850 NC_010001.1 1084122 1085408 R KEGG: ctc:CTC00469 predicted transglutaminase/protease; hypothetical protein complement(1084122..1085408) Clostridium phytofermentans ISDg 5741722 YP_001557976.1 CDS Cphy_0851 NC_010001.1 1086121 1086771 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: ssa:SSA_0217 two-component system transcriptional regulator (CheY domain and HTH-like DNA-binding domain); two component LuxR family transcriptional regulator 1086121..1086771 Clostridium phytofermentans ISDg 5741723 YP_001557977.1 CDS Cphy_0852 NC_010001.1 1086893 1087585 D hypothetical protein 1086893..1087585 Clostridium phytofermentans ISDg 5741724 YP_001557978.1 CDS Cphy_0853 NC_010001.1 1087601 1089319 D PFAM: ATP-binding region ATPase domain protein; KEGG: cac:CAC1454 membrane associated histidine kinase-like ATPase; signal transduction histidine kinase 1087601..1089319 Clostridium phytofermentans ISDg 5741725 YP_001557979.1 CDS Cphy_0854 NC_010001.1 1089598 1090047 D PFAM: regulatory protein MarR; transcriptional regulator TrmB; KEGG: dsy:DSY0085 hypothetical protein; transcriptional regulator TrmB 1089598..1090047 Clostridium phytofermentans ISDg 5741726 YP_001557980.1 CDS Cphy_0855 NC_010001.1 1090050 1092317 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_1784 predicted transport protein; ABC transporter related 1090050..1092317 Clostridium phytofermentans ISDg 5741727 YP_001557981.1 CDS Cphy_0856 NC_010001.1 1092314 1094194 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2513 ABC-type multidrug/protein/lipid transport system, ATPase component; ABC transporter 1092314..1094194 Clostridium phytofermentans ISDg 5741728 YP_001557982.1 CDS Cphy_0857 NC_010001.1 1094446 1097148 D KEGG: bhe:BH00920 cyclic beta 1-2 glucan synthetase; cellulase 1094446..1097148 Clostridium phytofermentans ISDg 5741729 YP_001557983.1 CDS Cphy_0858 NC_010001.1 1097657 1098994 D PFAM: glycoside hydrolase family 30; KEGG: csc:Csac_2513 glucosylceramidase; glycoside hydrolase family protein 1097657..1098994 Clostridium phytofermentans ISDg 5741730 YP_001557984.1 CDS Cphy_0859 NC_010001.1 1099142 1099768 D KEGG: cdf:CD3500 foldase lipoprotein (late stage protein export lipoprotein); hypothetical protein 1099142..1099768 Clostridium phytofermentans ISDg 5741731 YP_001557985.1 CDS Cphy_0860 NC_010001.1 1099884 1100825 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2554 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1099884..1100825 Clostridium phytofermentans ISDg 5741732 YP_001557986.1 CDS Cphy_0861 NC_010001.1 1100837 1101745 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2553 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1100837..1101745 Clostridium phytofermentans ISDg 5741733 YP_001557987.1 CDS Cphy_0862 NC_010001.1 1101768 1103474 D PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_2552 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1101768..1103474 Clostridium phytofermentans ISDg 5741734 YP_001557988.1 CDS Cphy_0863 NC_010001.1 1103665 1105464 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: csc:Csac_2551 integral membrane sensor signal transduction histidine kinase; histidine kinase internal region 1103665..1105464 Clostridium phytofermentans ISDg 5741735 YP_001557989.1 CDS Cphy_0864 NC_010001.1 1105480 1106991 D PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_2550 response regulator receiver protein; two component AraC family transcriptional regulator 1105480..1106991 Clostridium phytofermentans ISDg 5741736 YP_001557990.1 CDS Cphy_0865 NC_010001.1 1107042 1110134 D KEGG: fno:Fnod_0956 hypothetical protein; hypothetical protein 1107042..1110134 Clostridium phytofermentans ISDg 5741737 YP_001557991.1 CDS Cphy_0866 NC_010001.1 1110773 1111921 D PFAM: beta-lactamase; KEGG: sil:SPO1641 beta-lactamase; beta-lactamase 1110773..1111921 Clostridium phytofermentans ISDg 5741738 YP_001557992.1 CDS Cphy_0867 NC_010001.1 1112355 1113065 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbe:Cbei_2117 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1112355..1113065 Clostridium phytofermentans ISDg 5741739 YP_001557993.1 CDS Cphy_0868 NC_010001.1 1113087 1115621 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cbe:Cbei_2118 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1113087..1115621 Clostridium phytofermentans ISDg 5741740 YP_001557994.1 CDS Cphy_0869 NC_010001.1 1115859 1116722 R TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cpe:CPE0026 hypothetical protein; degV family protein complement(1115859..1116722) Clostridium phytofermentans ISDg 5741741 YP_001557995.1 CDS Cphy_0870 NC_010001.1 1117321 1117461 D KEGG: cth:Cthe_0907 hypothetical protein; hypothetical protein 1117321..1117461 Clostridium phytofermentans ISDg 5741742 YP_001557996.1 CDS Cphy_0871 NC_010001.1 1117774 1119243 D PFAM: Radical SAM domain protein; KEGG: cth:Cthe_0906 radical SAM; radical SAM domain-containing protein 1117774..1119243 Clostridium phytofermentans ISDg 5741743 YP_001557997.1 CDS Cphy_0872 NC_010001.1 1119304 1119924 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: csc:Csac_2481 methyltransferase type 11; methyltransferase type 12 1119304..1119924 Clostridium phytofermentans ISDg 5741744 YP_001557998.1 CDS Cphy_0873 NC_010001.1 1120236 1120874 D hypothetical protein 1120236..1120874 Clostridium phytofermentans ISDg 5741745 YP_001557999.1 CDS Cphy_0874 NC_010001.1 1121176 1123458 R KEGG: afm:AFUA_3G12590 conserved hypothetical protein; hypothetical protein complement(1121176..1123458) Clostridium phytofermentans ISDg 5741746 YP_001558000.1 CDS Cphy_0875 NC_010001.1 1123806 1125716 D PFAM: glycoside hydrolase family 43; KEGG: bld:BLi00864 xylan beta-1,4-xylosidase; RBL03427; glycoside hydrolase family protein 1123806..1125716 Clostridium phytofermentans ISDg 5741747 YP_001558001.1 CDS Cphy_0876 NC_010001.1 1125956 1127734 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cbe:Cbei_4321 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 1125956..1127734 Clostridium phytofermentans ISDg 5741748 YP_001558002.1 CDS Cphy_0877 NC_010001.1 1127968 1128282 D hypothetical protein 1127968..1128282 Clostridium phytofermentans ISDg 5741749 YP_001558003.1 CDS Cphy_0878 NC_010001.1 1128407 1129267 R KEGG: cbe:Cbei_1909 membrane -like protein; hypothetical protein complement(1128407..1129267) Clostridium phytofermentans ISDg 5741750 YP_001558004.1 CDS Cphy_0879 NC_010001.1 1129734 1130480 D KEGG: cpe:CPE0991 tRNA-pseudouridine synthase I; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 1129734..1130480 Clostridium phytofermentans ISDg 5741751 YP_001558005.1 CDS Cphy_0880 NC_010001.1 1130690 1131088 D PFAM: NUDIX hydrolase; KEGG: ecs:ECs3139 hypothetical protein; NUDIX hydrolase 1130690..1131088 Clostridium phytofermentans ISDg 5741752 YP_001558006.1 CDS Cphy_0881 NC_010001.1 1131164 1132444 D KEGG: amt:Amet_4213 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3; dihydroorotase, multifunctional complex type 1131164..1132444 Clostridium phytofermentans ISDg 5741753 YP_001558007.1 CDS Cphy_0882 NC_010001.1 1132706 1133635 D TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: amt:Amet_4212 orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 1132706..1133635 Clostridium phytofermentans ISDg 5741754 YP_001558008.1 CDS Cphy_0883 NC_010001.1 1133655 1135010 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_2656 MATE efflux family protein; MATE efflux family protein 1133655..1135010 Clostridium phytofermentans ISDg 5741755 YP_001558009.1 CDS Cphy_0884 NC_010001.1 1135340 1135951 R PFAM: SNARE associated Golgi protein; KEGG: cdf:CD0314 hypothetical protein; hypothetical protein complement(1135340..1135951) Clostridium phytofermentans ISDg 5741756 YP_001558010.1 CDS Cphy_0885 NC_010001.1 1136104 1137153 D KEGG: lwe:lwe2206 CoiA-like family protein; competence protein-like protein 1136104..1137153 Clostridium phytofermentans ISDg 5741757 YP_001558011.1 CDS Cphy_0886 NC_010001.1 1137184 1138152 D KEGG: llc:LACR_1479 hypothetical protein; hypothetical protein 1137184..1138152 Clostridium phytofermentans ISDg 5741758 YP_001558012.1 CDS Cphy_0887 NC_010001.1 1138291 1138560 R hypothetical protein complement(1138291..1138560) Clostridium phytofermentans ISDg 5741759 YP_001558013.1 CDS Cphy_0888 NC_010001.1 1138603 1139820 R KEGG: pfa:PF13_0097 hypothetical protein; hypothetical protein complement(1138603..1139820) Clostridium phytofermentans ISDg 5741760 YP_001558014.1 CDS Cphy_0889 NC_010001.1 1139974 1140453 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(1139974..1140453) Clostridium phytofermentans ISDg 5741761 YP_001558015.1 CDS Cphy_0891 NC_010001.1 1141276 1141920 D PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cdf:CD2573 probable hydrolase; hydrolase 1141276..1141920 Clostridium phytofermentans ISDg 5741763 YP_001558016.1 CDS Cphy_0892 NC_010001.1 1142074 1143030 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: cno:NT01CX_0980 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 1142074..1143030 Clostridium phytofermentans ISDg 5741764 YP_001558017.1 CDS Cphy_0893 NC_010001.1 1143168 1144637 R PFAM: Catalase domain protein; KEGG: bce:BC1155 catalase; catalase complement(1143168..1144637) Clostridium phytofermentans ISDg 5741765 YP_001558018.1 CDS Cphy_0894 NC_010001.1 1144874 1145986 R PFAM: extracellular solute-binding protein family 1; KEGG: cth:Cthe_0747 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1144874..1145986) Clostridium phytofermentans ISDg 5741766 YP_001558019.1 CDS Cphy_0895 NC_010001.1 1146011 1146823 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_0748 binding-protein-dependent transport systems inner membrane component; ornithine carbamoyltransferase complement(1146011..1146823) Clostridium phytofermentans ISDg 5741767 YP_001558020.1 CDS Cphy_0896 NC_010001.1 1146817 1147710 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1462 hypothetical protein; binding-protein-dependent transport system inner membrane protein complement(1146817..1147710) Clostridium phytofermentans ISDg 5741768 YP_001558021.1 CDS Cphy_0897 NC_010001.1 1147703 1148779 R KEGG: cth:Cthe_0750 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase complement(1147703..1148779) Clostridium phytofermentans ISDg 5741769 YP_001558022.1 CDS Cphy_0898 NC_010001.1 1148791 1149330 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: cth:Cthe_0751 transcriptional regulator, XRE family with cupin sensor; XRE family transcriptional regulator complement(1148791..1149330) Clostridium phytofermentans ISDg 5741770 YP_001558023.1 CDS Cphy_0899 NC_010001.1 1149784 1150539 D KEGG: cth:Cthe_2569 hypothetical protein; hypothetical protein 1149784..1150539 Clostridium phytofermentans ISDg 5741771 YP_001558024.1 CDS Cphy_0900 NC_010001.1 1150709 1152709 R PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_3249 drug resistance ABC transporter, ATP-binding protein; ABC transporter complement(1150709..1152709) Clostridium phytofermentans ISDg 5741772 YP_001558025.1 CDS Cphy_0901 NC_010001.1 1153271 1153918 D modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 1153271..1153918 Clostridium phytofermentans ISDg 5741773 YP_001558026.1 CDS Cphy_0902 NC_010001.1 1153915 1154682 D KEGG: cth:Cthe_2695 hypothetical protein; hypothetical protein 1153915..1154682 Clostridium phytofermentans ISDg 5741774 YP_001558027.1 CDS Cphy_0903 NC_010001.1 1154707 1155075 D TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: cno:NT01CX_1261 holo-(acyl-carrier-protein) synthase; holo-acyl-carrier-protein synthase 1154707..1155075 Clostridium phytofermentans ISDg 5741775 YP_001558028.1 CDS Cphy_0904 NC_010001.1 1155089 1156636 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: tte:TTE2170 predicted sugar kinase; carbohydrate kinase 1155089..1156636 Clostridium phytofermentans ISDg 5741776 YP_001558029.1 CDS Cphy_0905 NC_010001.1 1156629 1157798 D KEGG: cbe:Cbei_2758 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 1156629..1157798 Clostridium phytofermentans ISDg 5741777 YP_001558030.1 CDS Cphy_0906 NC_010001.1 1157877 1158278 D PFAM: PemK family protein; KEGG: cth:Cthe_2699 transcriptional modulator of MazE/toxin, MazF; transcriptional modulator of MazE/toxin MazF 1157877..1158278 Clostridium phytofermentans ISDg 5741778 YP_001558031.1 CDS Cphy_0907 NC_010001.1 1158767 1160230 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cbf:CLI_2985 CBS/transporter-associated domain protein; hypothetical protein 1158767..1160230 Clostridium phytofermentans ISDg 5741779 YP_001558032.1 CDS Cphy_0908 NC_010001.1 1161112 1161885 D PFAM: protein of unknown function DUF1212; KEGG: cbe:Cbei_1867 protein of unknown function DUF1212; hypothetical protein 1161112..1161885 Clostridium phytofermentans ISDg 5741780 YP_001558033.1 CDS Cphy_0909 NC_010001.1 1161882 1162484 D KEGG: csc:Csac_2063 hypothetical protein; hypothetical protein 1161882..1162484 Clostridium phytofermentans ISDg 5741781 YP_001558034.1 CDS Cphy_0910 NC_010001.1 1162542 1163021 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 1162542..1163021 Clostridium phytofermentans ISDg 5741782 YP_001558035.1 CDS Cphy_0911 NC_010001.1 1163265 1163804 D hypothetical protein 1163265..1163804 Clostridium phytofermentans ISDg 5741783 YP_001558036.1 CDS Cphy_0912 NC_010001.1 1164154 1164624 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cpf:CPF_1092 RNA polymerase sigma-70 factor, ECF family; ECF subfamily RNA polymerase sigma-24 factor 1164154..1164624 Clostridium phytofermentans ISDg 5741784 YP_001558037.1 CDS Cphy_0913 NC_010001.1 1164629 1165360 D KEGG: cpf:CPF_1093 hypothetical protein; hypothetical protein 1164629..1165360 Clostridium phytofermentans ISDg 5741785 YP_001558038.1 CDS Cphy_0914 NC_010001.1 1165361 1166233 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_1094 ABC transporter, ATP-binding protein; ABC transporter 1165361..1166233 Clostridium phytofermentans ISDg 5741786 YP_001558039.1 CDS Cphy_0915 NC_010001.1 1166236 1167501 D KEGG: cpf:CPF_1095 hypothetical protein; hypothetical protein 1166236..1167501 Clostridium phytofermentans ISDg 5741787 YP_001558040.1 CDS Cphy_0916 NC_010001.1 1167513 1168667 D KEGG: cpf:CPF_1096 hypothetical protein; hypothetical protein 1167513..1168667 Clostridium phytofermentans ISDg 5741788 YP_001558041.1 CDS Cphy_0917 NC_010001.1 1169148 1169756 D KEGG: cbh:CLC_1692 hypothetical protein; hypothetical protein 1169148..1169756 Clostridium phytofermentans ISDg 5741789 YP_001558042.1 CDS Cphy_0918 NC_010001.1 1170206 1171381 R PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(1170206..1171381) Clostridium phytofermentans ISDg 5741790 YP_001558043.1 CDS Cphy_0919 NC_010001.1 1171893 1173095 D KEGG: bsu:BG13636 hypothetical protein; hypothetical protein 1171893..1173095 Clostridium phytofermentans ISDg 5741791 YP_001558044.1 CDS Cphy_0920 NC_010001.1 1173304 1174317 D hypothetical protein 1173304..1174317 Clostridium phytofermentans ISDg 5741792 YP_001558045.1 CDS Cphy_0921 NC_010001.1 1174857 1175444 D KEGG: cph:Cpha266_1604 hypothetical protein; hypothetical protein 1174857..1175444 Clostridium phytofermentans ISDg 5741793 YP_001558046.1 CDS Cphy_0923 NC_010001.1 1175807 1177324 D KEGG: cno:NT01CX_1720 hypothetical protein; hypothetical protein 1175807..1177324 Clostridium phytofermentans ISDg 5741795 YP_001558047.1 CDS Cphy_0924 NC_010001.1 1177514 1178329 D hypothetical protein 1177514..1178329 Clostridium phytofermentans ISDg 5741796 YP_001558048.1 CDS Cphy_0925 NC_010001.1 1178997 1180382 D KEGG: bba:Bd3697 hypothetical protein; hypothetical protein 1178997..1180382 Clostridium phytofermentans ISDg 5741797 YP_001558049.1 CDS Cphy_0926 NC_010001.1 1180801 1180953 D hypothetical protein 1180801..1180953 Clostridium phytofermentans ISDg 5741798 YP_001558050.1 CDS Cphy_0927 NC_010001.1 1181187 1181795 D KEGG: cbh:CLC_1692 hypothetical protein; hypothetical protein 1181187..1181795 Clostridium phytofermentans ISDg 5741799 YP_001558051.1 CDS Cphy_0928 NC_010001.1 1182272 1184572 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bsu:BG13838 similar to transcriptional regulator (AraC/XylS family); AraC family transcriptional regulator complement(1182272..1184572) Clostridium phytofermentans ISDg 5741800 YP_001558052.1 CDS Cphy_0929 NC_010001.1 1184776 1185768 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi03166 membrane protein; RBL03398; binding-protein-dependent transport system inner membrane protein 1184776..1185768 Clostridium phytofermentans ISDg 5741801 YP_001558053.1 CDS Cphy_0930 NC_010001.1 1185782 1186666 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0557 sugar ABC transporter permease; binding-protein-dependent transport systems inner membrane component 1185782..1186666 Clostridium phytofermentans ISDg 5741802 YP_001558054.1 CDS Cphy_0931 NC_010001.1 1186734 1188368 D PFAM: extracellular solute-binding protein family 1; KEGG: bld:BLi03168 similar to lipoprotein; RBL03402; extracellular solute-binding protein 1186734..1188368 Clostridium phytofermentans ISDg 5741803 YP_001558055.1 CDS Cphy_0932 NC_010001.1 1188484 1190736 D PFAM: polysaccharide lyase family 8; polysaccharide lyase family 8 domain protein; KEGG: bth:BT_2964 chondroitinase AC precursor; polysaccharide lyase family protein 8 1188484..1190736 Clostridium phytofermentans ISDg 5741804 YP_001558056.1 CDS Cphy_0933 NC_010001.1 1190798 1191850 D KEGG: fjo:Fjoh_4231 hypothetical protein; hypothetical protein 1190798..1191850 Clostridium phytofermentans ISDg 5741805 YP_001558057.1 CDS Cphy_0934 NC_010001.1 1191923 1193098 D PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 unsaturated glucuronyl hydrolase; glycosyl hydrolase family protein 1191923..1193098 Clostridium phytofermentans ISDg 5741806 YP_001558058.1 CDS Cphy_0935 NC_010001.1 1193390 1195306 D KEGG: abu:Abu_1539 conserved hypothetical protein; HD superfamily phosphohydrolase-like protein 1193390..1195306 Clostridium phytofermentans ISDg 5741807 YP_001558059.1 CDS Cphy_0936 NC_010001.1 1195303 1195659 D KEGG: bcl:ABC1987 hypothetical protein; hypothetical protein 1195303..1195659 Clostridium phytofermentans ISDg 5741808 YP_001558060.1 CDS Cphy_0937 NC_010001.1 1196101 1197840 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1553 ABC transporter related; ABC transporter 1196101..1197840 Clostridium phytofermentans ISDg 5741809 YP_001558061.1 CDS Cphy_0938 NC_010001.1 1198305 1200728 D TIGRFAM: leucyl-tRNA synthetase; KEGG: gka:GK2842 leucyl-tRNA synthetase; leucyl-tRNA synthetase 1198305..1200728 Clostridium phytofermentans ISDg 5741810 YP_001558062.1 CDS Cphy_0939 NC_010001.1 1201209 1205180 D KEGG: mba:Mbar_A1995 cell surface protein; hypothetical protein 1201209..1205180 Clostridium phytofermentans ISDg 5741811 YP_001558063.1 CDS Cphy_0940 NC_010001.1 1205467 1205925 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: dsy:DSY2792 hypothetical protein; ECF subfamily RNA polymerase sigma-24 factor 1205467..1205925 Clostridium phytofermentans ISDg 5741812 YP_001558064.1 CDS Cphy_0941 NC_010001.1 1205922 1206647 D KEGG: cno:NT01CX_1307 hypothetical protein; hypothetical protein 1205922..1206647 Clostridium phytofermentans ISDg 5741813 YP_001558065.1 CDS Cphy_0944 NC_010001.1 1207442 1208062 D KEGG: dsy:DSY2794 hypothetical protein; hypothetical protein 1207442..1208062 Clostridium phytofermentans ISDg 5741815 YP_001558066.1 CDS Cphy_0945 NC_010001.1 1208352 1212347 D KEGG: mac:MA4292 cell surface protein; hypothetical protein 1208352..1212347 Clostridium phytofermentans ISDg 5741816 YP_001558067.1 CDS Cphy_0946 NC_010001.1 1212923 1213483 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ldb:Ldb1881 RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 factor 1212923..1213483 Clostridium phytofermentans ISDg 5741817 YP_001558068.1 CDS Cphy_0947 NC_010001.1 1213480 1214445 D hypothetical protein 1213480..1214445 Clostridium phytofermentans ISDg 5743888 YP_001558069.1 CDS Cphy_0948 NC_010001.1 1214641 1214853 R hypothetical protein complement(1214641..1214853) Clostridium phytofermentans ISDg 5743889 YP_001558070.1 CDS Cphy_0949 NC_010001.1 1215221 1215385 D KEGG: btl:BALH_1875 lactoylglutathione lyase; lactoylglutathione lyase 1215221..1215385 Clostridium phytofermentans ISDg 5743890 YP_001558071.1 CDS Cphy_0950 NC_010001.1 1215463 1215990 D PFAM: GCN5-related N-acetyltransferase; KEGG: cbe:Cbei_3606 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1215463..1215990 Clostridium phytofermentans ISDg 5743891 YP_001558072.1 CDS Cphy_0951 NC_010001.1 1216038 1216271 D hypothetical protein 1216038..1216271 Clostridium phytofermentans ISDg 5743892 YP_001558073.1 CDS Cphy_0952 NC_010001.1 1216313 1216840 D PFAM: GCN5-related N-acetyltransferase; KEGG: ssa:SSA_1614 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1216313..1216840 Clostridium phytofermentans ISDg 5743893 YP_001558074.1 CDS Cphy_0953 NC_010001.1 1216928 1217344 D KEGG: cdf:CD0593 hypothetical protein; hypothetical protein 1216928..1217344 Clostridium phytofermentans ISDg 5743894 YP_001558075.1 CDS Cphy_0954 NC_010001.1 1217507 1217698 D PFAM: helix-turn-helix domain protein; KEGG: spb:M28_Spy1636 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 1217507..1217698 Clostridium phytofermentans ISDg 5743895 YP_001558076.1 CDS Cphy_0955 NC_010001.1 1217945 1218907 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: fnu:FN1967 hypothetical protein; xylose isomerase domain-containing protein 1217945..1218907 Clostridium phytofermentans ISDg 5743896 YP_001558077.1 CDS Cphy_0956 NC_010001.1 1219342 1221117 D catalyzes a two-step reaction, first charging an alanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1219342..1221117 Clostridium phytofermentans ISDg 5743897 YP_001558078.1 CDS Cphy_0957 NC_010001.1 1221625 1223472 D KEGG: oih:OB1084 hypothetical protein; ATPase of the ABC class-like protein 1221625..1223472 Clostridium phytofermentans ISDg 5743898 YP_001558079.1 CDS Cphy_0958 NC_010001.1 1223811 1225289 D PFAM: Aldehyde Dehydrogenase_; KEGG: cbe:Cbei_0729 aldehyde dehydrogenase; aldehyde dehydrogenase 1223811..1225289 Clostridium phytofermentans ISDg 5743899 YP_001558080.1 CDS Cphy_0959 NC_010001.1 1225473 1226627 R KEGG: ade:Adeh_1850 hypothetical protein; hypothetical protein complement(1225473..1226627) Clostridium phytofermentans ISDg 5743900 YP_001558081.1 CDS Cphy_0960 NC_010001.1 1227082 1227720 D PFAM: HhH-GPD family protein; KEGG: pca:Pcar_0009 endo III-related endonuclease; DNA-(apurinic or apyrimidinic site) lyase 1227082..1227720 Clostridium phytofermentans ISDg 5743901 YP_001558082.1 CDS Cphy_0961 NC_010001.1 1228402 1230327 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_0247 ABC transporter-related protein; ABC transporter 1228402..1230327 Clostridium phytofermentans ISDg 5743902 YP_001558083.1 CDS Cphy_0962 NC_010001.1 1230609 1231184 D KEGG: cbe:Cbei_4079 hypothetical protein; hypothetical protein 1230609..1231184 Clostridium phytofermentans ISDg 5743903 YP_001558084.1 CDS Cphy_0963 NC_010001.1 1231159 1231836 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbe:Cbei_2249 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1231159..1231836 Clostridium phytofermentans ISDg 5743904 YP_001558085.1 CDS Cphy_0964 NC_010001.1 1231914 1232909 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cbe:Cbei_2250 histidine kinase; integral membrane sensor signal transduction histidine kinase 1231914..1232909 Clostridium phytofermentans ISDg 5743905 YP_001558086.1 CDS Cphy_0965 NC_010001.1 1233227 1233841 R KEGG: btk:BT9727_2543 possible uridine kinase; uridine kinase complement(1233227..1233841) Clostridium phytofermentans ISDg 5743906 YP_001558087.1 CDS Cphy_0966 NC_010001.1 1234462 1234827 D hypothetical protein 1234462..1234827 Clostridium phytofermentans ISDg 5743907 YP_001558088.1 CDS Cphy_0967 NC_010001.1 1235059 1235976 D KEGG: cdf:CD1511 hypothetical protein; hypothetical protein 1235059..1235976 Clostridium phytofermentans ISDg 5743908 YP_001558089.1 CDS Cphy_0968 NC_010001.1 1236682 1237503 D PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_4919 nitroreductase; nitroreductase 1236682..1237503 Clostridium phytofermentans ISDg 5743909 YP_001558090.1 CDS Cphy_0969 NC_010001.1 1237636 1238337 R KEGG: cpr:CPR_0544 cysteine-rich domain family; hypothetical protein complement(1237636..1238337) Clostridium phytofermentans ISDg 5743910 YP_001558091.1 CDS Cphy_0970 NC_010001.1 1238364 1239662 R KEGG: cac:CAC0729 hypothetical protein; hypothetical protein complement(1238364..1239662) Clostridium phytofermentans ISDg 5743911 YP_001558092.1 CDS Cphy_0971 NC_010001.1 1239888 1240298 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cdf:CD3352 AraC-family transcriptional regulator; AraC family transcriptional regulator 1239888..1240298 Clostridium phytofermentans ISDg 5743912 YP_001558093.1 CDS Cphy_0972 NC_010001.1 1240295 1240876 D PFAM: peptidase S14 ClpP; KEGG: cpr:CPR_1385 ATP-dependent Clp protease, proteolytic subunit ClpP; endopeptidase Clp 1240295..1240876 Clostridium phytofermentans ISDg 5743913 YP_001558094.1 CDS Cphy_0973 NC_010001.1 1241144 1242187 D PFAM: alpha/beta hydrolase fold; KEGG: bcz:BCZK2148 hydrolase, alpha/beta fold family; alpha/beta hydrolase 1241144..1242187 Clostridium phytofermentans ISDg 5743914 YP_001558095.1 CDS Cphy_0974 NC_010001.1 1242595 1243308 D PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: cdf:CD1089 two-component response regulator; LytTR family two component transcriptional regulator 1242595..1243308 Clostridium phytofermentans ISDg 5743915 YP_001558096.1 CDS Cphy_0975 NC_010001.1 1243305 1244033 D PFAM: ATP-binding region ATPase domain protein; KEGG: cbh:CLC_1104 sensor histidine kinase; signal transduction histidine kinase regulating citrate/malate metabolism 1243305..1244033 Clostridium phytofermentans ISDg 5743916 YP_001558097.1 CDS Cphy_0978 NC_010001.1 1245274 1246302 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH2664 ABC transporter ATP-binding protein; ABC transporter 1245274..1246302 Clostridium phytofermentans ISDg 5743918 YP_001558098.1 CDS Cphy_0979 NC_010001.1 1246284 1247090 D PFAM: protein of unknown function DUF990; KEGG: cpr:CPR_0171 ABC transporter, permease; hypothetical protein 1246284..1247090 Clostridium phytofermentans ISDg 5743919 YP_001558099.1 CDS Cphy_0980 NC_010001.1 1247094 1247906 D PFAM: protein of unknown function DUF990; KEGG: gtn:GTNG_0486 ABC transporter (permease); hypothetical protein 1247094..1247906 Clostridium phytofermentans ISDg 5743920 YP_001558100.1 CDS Cphy_0981 NC_010001.1 1248022 1248516 D KEGG: tde:TDE1724 hypothetical protein; hypothetical protein 1248022..1248516 Clostridium phytofermentans ISDg 5743921 YP_001558101.1 CDS Cphy_0982 NC_010001.1 1249131 1249883 D KEGG: cac:CAC0222 exodeoxyribonuclease (exoA); TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III 1249131..1249883 Clostridium phytofermentans ISDg 5743922 YP_001558102.1 CDS Cphy_0983 NC_010001.1 1250202 1250948 D KEGG: cpe:CPE0798 hypothetical protein; hypothetical protein 1250202..1250948 Clostridium phytofermentans ISDg 5743923 YP_001558103.1 CDS Cphy_0984 NC_010001.1 1251218 1251655 D hypothetical protein 1251218..1251655 Clostridium phytofermentans ISDg 5743924 YP_001558104.1 CDS Cphy_0985 NC_010001.1 1251841 1251975 D KEGG: cno:NT01CX_2017 hypothetical protein; hypothetical protein 1251841..1251975 Clostridium phytofermentans ISDg 5743925 YP_001558105.1 CDS Cphy_0986 NC_010001.1 1252151 1252393 D hypothetical protein 1252151..1252393 Clostridium phytofermentans ISDg 5743926 YP_001558106.1 CDS Cphy_0987 NC_010001.1 1252420 1252794 D PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin); desulfoferrodoxin ferrous iron-binding region 1252420..1252794 Clostridium phytofermentans ISDg 5743927 YP_001558107.1 CDS Cphy_0988 NC_010001.1 1253183 1253779 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: cpf:CPF_0793 flavodoxin family protein; NAD(P)H dehydrogenase (quinone) 1253183..1253779 Clostridium phytofermentans ISDg 5743928 YP_001558108.1 CDS Cphy_0989 NC_010001.1 1253941 1255362 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bha:BH0578 transcriptional regulator (GntR family); transcriptional regulator complement(1253941..1255362) Clostridium phytofermentans ISDg 5743929 YP_001558109.1 CDS Cphy_0990 NC_010001.1 1255469 1256275 D TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: bay:RBAM_035260 ThiD; phosphomethylpyrimidine kinase 1255469..1256275 Clostridium phytofermentans ISDg 5743930 YP_001558110.1 CDS Cphy_0991 NC_010001.1 1256464 1257372 D PFAM: Helix-turn-helix type 11 domain protein; KEGG: cbh:CLC_0926 hypothetical protein; helix-turn-helix type 11 domain-containing protein 1256464..1257372 Clostridium phytofermentans ISDg 5743931 YP_001558111.1 CDS Cphy_0992 NC_010001.1 1257421 1257705 D KEGG: cdf:CD1724 hypothetical protein; hypothetical protein 1257421..1257705 Clostridium phytofermentans ISDg 5743932 YP_001558112.1 CDS Cphy_0993 NC_010001.1 1257746 1258468 D KEGG: amt:Amet_3507 hypothetical protein; hypothetical protein 1257746..1258468 Clostridium phytofermentans ISDg 5743933 YP_001558113.1 CDS Cphy_0994 NC_010001.1 1258596 1258880 D KEGG: dsy:DSY1050 hypothetical protein; hypothetical protein 1258596..1258880 Clostridium phytofermentans ISDg 5743934 YP_001558114.1 CDS Cphy_0995 NC_010001.1 1258979 1259263 D KEGG: dsy:DSY1051 hypothetical protein; hypothetical protein 1258979..1259263 Clostridium phytofermentans ISDg 5743935 YP_001558115.1 CDS Cphy_0996 NC_010001.1 1259490 1260455 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ssp:SSP1638 lipase; alpha/beta hydrolase complement(1259490..1260455) Clostridium phytofermentans ISDg 5743936 YP_001558116.1 CDS Cphy_0997 NC_010001.1 1260824 1262278 D PFAM: protein of unknown function UPF0061; KEGG: cbh:CLC_1238 hypothetical protein; hypothetical protein 1260824..1262278 Clostridium phytofermentans ISDg 5743937 YP_001558117.1 CDS Cphy_0998 NC_010001.1 1262609 1263250 D PFAM: protein of unknown function UPF0126; KEGG: lla:L169795 hypothetical protein; hypothetical protein 1262609..1263250 Clostridium phytofermentans ISDg 5743938 YP_001558118.1 CDS Cphy_0999 NC_010001.1 1263506 1264033 D KEGG: amt:Amet_2129 hypothetical protein; hypothetical protein 1263506..1264033 Clostridium phytofermentans ISDg 5743939 YP_001558119.1 CDS Cphy_1000 NC_010001.1 1264310 1265803 D PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cpf:CPF_1242 dicarboxylate transporter; C4-dicarboxylate anaerobic carrier 1264310..1265803 Clostridium phytofermentans ISDg 5743940 YP_001558120.1 CDS Cphy_1001 NC_010001.1 1265962 1266237 D hypothetical protein 1265962..1266237 Clostridium phytofermentans ISDg 5743941 YP_001558121.1 CDS Cphy_1002 NC_010001.1 1266349 1266879 D TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: cbh:CLC_2702 2'-5' RNA ligase; 2'-5' RNA ligase 1266349..1266879 Clostridium phytofermentans ISDg 5743942 YP_001558122.1 CDS Cphy_1003 NC_010001.1 1267185 1268915 D PFAM: FMN-binding domain protein; KEGG: dsy:DSY1155 probable chlorophenol reductive dehalogenase; FMN-binding domain-containing protein 1267185..1268915 Clostridium phytofermentans ISDg 5743943 YP_001558123.1 CDS Cphy_1004 NC_010001.1 1269352 1270377 D PFAM: regulatory protein ArsR; KEGG: sgo:SGO_1596 transcription regulator; ArsR family transcriptional regulator 1269352..1270377 Clostridium phytofermentans ISDg 5743944 YP_001558124.1 CDS Cphy_1005 NC_010001.1 1270677 1271450 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tko:TK2026 ABC-type multidrug transport system, ATPase component; ABC transporter 1270677..1271450 Clostridium phytofermentans ISDg 5743945 YP_001558125.1 CDS Cphy_1006 NC_010001.1 1271631 1272413 D PFAM: ABC-2 type transporter; KEGG: mst:Msp_0196 ABC-type multidrug transport system, permease; ABC-2 type transporter 1271631..1272413 Clostridium phytofermentans ISDg 5743946 YP_001558126.1 CDS Cphy_1007 NC_010001.1 1272518 1273297 D PFAM: ABC-2 type transporter; KEGG: tpt:Tpet_1474 ABC-2 type transporter; ABC-2 type transporter 1272518..1273297 Clostridium phytofermentans ISDg 5743947 YP_001558127.1 CDS Cphy_1008 NC_010001.1 1273642 1274403 D PFAM: regulatory protein MerR; TipAS antibiotic-recognition domain protein; KEGG: dsy:DSY4240 hypothetical protein; MerR family transcriptional regulator 1273642..1274403 Clostridium phytofermentans ISDg 5743948 YP_001558128.1 CDS Cphy_1009 NC_010001.1 1274886 1276127 D PFAM: tRNA synthetase class II (G H P and S); KEGG: kra:Krad_0299 histidine--tRNA ligase; histidine--tRNA ligase 1274886..1276127 Clostridium phytofermentans ISDg 5743949 YP_001558129.1 CDS Cphy_1010 NC_010001.1 1276704 1277816 D PFAM: helix-turn-helix domain protein; KEGG: mac:MA0999 hypothetical protein; XRE family transcriptional regulator 1276704..1277816 Clostridium phytofermentans ISDg 5743950 YP_001558130.1 CDS Cphy_1011 NC_010001.1 1278019 1278399 D hypothetical protein 1278019..1278399 Clostridium phytofermentans ISDg 5743951 YP_001558131.1 CDS Cphy_1012 NC_010001.1 1278635 1279747 R PFAM: regulatory protein GntR HTH; KEGG: gtn:GTNG_1824 transcriptional regulator; regulatory protein GntR HTH complement(1278635..1279747) Clostridium phytofermentans ISDg 5743952 YP_001558132.1 CDS Cphy_1013 NC_010001.1 1280007 1281491 D PFAM: extracellular solute-binding protein family 1; KEGG: bay:RBAM_029660 YurO; extracellular solute-binding protein 1280007..1281491 Clostridium phytofermentans ISDg 5743953 YP_001558133.1 CDS Cphy_1014 NC_010001.1 1281508 1282416 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE2416 ABC-type sugar transport systems, permease components; binding-protein-dependent transport system inner membrane protein 1281508..1282416 Clostridium phytofermentans ISDg 5743954 YP_001558134.1 CDS Cphy_1015 NC_010001.1 1282416 1283258 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcz:BCZK1636 sugar ABC transporter, permease; binding-protein-dependent transport system inner membrane protein 1282416..1283258 Clostridium phytofermentans ISDg 5741851 YP_001558135.1 CDS Cphy_1016 NC_010001.1 1283280 1284356 D hypothetical protein 1283280..1284356 Clostridium phytofermentans ISDg 5741852 YP_001558136.1 CDS Cphy_1017 NC_010001.1 1284374 1285231 D hypothetical protein 1284374..1285231 Clostridium phytofermentans ISDg 5741853 YP_001558137.1 CDS Cphy_1018 NC_010001.1 1285247 1287442 D hypothetical protein 1285247..1287442 Clostridium phytofermentans ISDg 5741854 YP_001558138.1 CDS Cphy_1019 NC_010001.1 1287569 1289839 D PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: lwe:lwe2763 glycosyl transferase, family 65; Kojibiose phosphorylase 1287569..1289839 Clostridium phytofermentans ISDg 5741855 YP_001558139.1 CDS Cphy_1020 NC_010001.1 1289839 1291104 D hypothetical protein 1289839..1291104 Clostridium phytofermentans ISDg 5741856 YP_001558140.1 CDS Cphy_1021 NC_010001.1 1291233 1291862 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cac:CAC2614 beta-phosphoglucomutase; beta-phosphoglucomutase 1291233..1291862 Clostridium phytofermentans ISDg 5741857 YP_001558141.1 CDS Cphy_1022 NC_010001.1 1292305 1293624 D PFAM: Na+/H+ antiporter NhaC; KEGG: cbf:CLI_3587 Na+/H+ antiporter family protein; Na+/H+ antiporter NhaC 1292305..1293624 Clostridium phytofermentans ISDg 5741858 YP_001558142.1 CDS Cphy_1023 NC_010001.1 1294163 1294945 D hypothetical protein 1294163..1294945 Clostridium phytofermentans ISDg 5741859 YP_001558143.1 CDS Cphy_1024 NC_010001.1 1295073 1295747 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: chy:CHY_0092 DNA-binding response regulator; two component transcriptional regulator 1295073..1295747 Clostridium phytofermentans ISDg 5741860 YP_001558144.1 CDS Cphy_1025 NC_010001.1 1295798 1297027 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: chy:CHY_0091 sensor histidine kinase; histidine kinase 1295798..1297027 Clostridium phytofermentans ISDg 5741861 YP_001558145.1 CDS Cphy_1026 NC_010001.1 1297198 1297953 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:BCZK2229 ABC transporter, ATP-binding protein; ABC transporter 1297198..1297953 Clostridium phytofermentans ISDg 5741862 YP_001558146.1 CDS Cphy_1027 NC_010001.1 1297956 1300316 D PFAM: protein of unknown function DUF214; KEGG: bcz:BCZK2228 ABC transporter, permease; hypothetical protein 1297956..1300316 Clostridium phytofermentans ISDg 5741863 YP_001558147.1 CDS Cphy_1028 NC_010001.1 1300463 1301665 R PFAM: sodium/glutamate symporter; KEGG: cno:NT01CX_2103 sodium/glutamate symporter; sodium/glutamate symporter complement(1300463..1301665) Clostridium phytofermentans ISDg 5741864 YP_001558148.1 CDS Cphy_1029 NC_010001.1 1301846 1303036 R PFAM: iron-containing alcohol dehydrogenase; KEGG: tva:TVAG_422780 alcohol dehydrogensae, Pfam: Fe-ADH DHQ_synthase PROSITE: COPPER_BLUE ADH_IRON_1; iron-containing alcohol dehydrogenase complement(1301846..1303036) Clostridium phytofermentans ISDg 5741865 YP_001558149.1 CDS Cphy_1030 NC_010001.1 1303422 1303622 D KEGG: cac:CAC1006 MutT-like (NUDIX) hydrolase; hypothetical protein 1303422..1303622 Clostridium phytofermentans ISDg 5741866 YP_001558150.1 CDS Cphy_1031 NC_010001.1 1303651 1304244 D hypothetical protein 1303651..1304244 Clostridium phytofermentans ISDg 5741867 YP_001558151.1 CDS Cphy_1032 NC_010001.1 1304261 1305217 D PFAM: PfkB domain protein; KEGG: cbh:CLC_1712 kinase, PfkB family; ribokinase-like domain-containing protein 1304261..1305217 Clostridium phytofermentans ISDg 5741868 YP_001558152.1 CDS Cphy_1033 NC_010001.1 1305814 1306302 D PFAM: GCN5-related N-acetyltransferase; KEGG: tde:TDE2748 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1305814..1306302 Clostridium phytofermentans ISDg 5741869 YP_001558153.1 CDS Cphy_1034 NC_010001.1 1306797 1307354 D PFAM: NUDIX hydrolase; KEGG: lbu:LBUL_1555 NUDIX family hydrolase; NUDIX hydrolase 1306797..1307354 Clostridium phytofermentans ISDg 5741870 YP_001558154.1 CDS Cphy_1035 NC_010001.1 1307566 1309035 D PFAM: chemotaxis sensory transducer; KEGG: ctc:CTC01155 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1307566..1309035 Clostridium phytofermentans ISDg 5741871 YP_001558155.1 CDS Cphy_1036 NC_010001.1 1309148 1309444 D hypothetical protein 1309148..1309444 Clostridium phytofermentans ISDg 5741872 YP_001558156.1 CDS Cphy_1037 NC_010001.1 1310081 1311613 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: btl:BALH_4611 ABC transporter, ATP-binding protein; ABC transporter 1310081..1311613 Clostridium phytofermentans ISDg 5741873 YP_001558157.1 CDS Cphy_1038 NC_010001.1 1311750 1312103 R hypothetical protein complement(1311750..1312103) Clostridium phytofermentans ISDg 5741874 YP_001558158.1 CDS Cphy_1039 NC_010001.1 1312192 1313139 R PFAM: protein of unknown function DUF161; KEGG: tte:TTE2159 hypothetical protein; hypothetical protein complement(1312192..1313139) Clostridium phytofermentans ISDg 5741875 YP_001558159.1 CDS Cphy_1040 NC_010001.1 1313619 1314086 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: lac:LBA0722 protein-tyrosine phosphatase; protein tyrosine phosphatase 1313619..1314086 Clostridium phytofermentans ISDg 5741876 YP_001558160.1 CDS Cphy_1041 NC_010001.1 1314142 1314855 D PFAM: pseudouridine synthase; KEGG: cdf:CD3582 pseudouridylate synthase; pseudouridine synthase 1314142..1314855 Clostridium phytofermentans ISDg 5741877 YP_001558161.1 CDS Cphy_1042 NC_010001.1 1315052 1315261 D hypothetical protein 1315052..1315261 Clostridium phytofermentans ISDg 5741878 YP_001558162.1 CDS Cphy_1043 NC_010001.1 1315254 1316147 D PFAM: Radical SAM domain protein; KEGG: cbe:Cbei_1527 radical SAM domain protein; radical SAM domain-containing protein 1315254..1316147 Clostridium phytofermentans ISDg 5741879 YP_001558163.1 CDS Cphy_1044 NC_010001.1 1316291 1316473 D hypothetical protein 1316291..1316473 Clostridium phytofermentans ISDg 5741880 YP_001558164.1 CDS Cphy_1045 NC_010001.1 1316927 1317427 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cth:Cthe_1438 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1316927..1317427 Clostridium phytofermentans ISDg 5741881 YP_001558165.1 CDS Cphy_1046 NC_010001.1 1317414 1318310 D KEGG: cth:Cthe_1437 hypothetical protein; hypothetical protein 1317414..1318310 Clostridium phytofermentans ISDg 5741882 YP_001558166.1 CDS Cphy_1047 NC_010001.1 1318430 1318669 D TIGRFAM: holin, SPP1 family; PFAM: Holin SPP1 family protein; KEGG: lla:L16574 holin; SPP1 family holin 1318430..1318669 Clostridium phytofermentans ISDg 5741883 YP_001558167.1 CDS Cphy_1048 NC_010001.1 1319045 1320175 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC3276 dehydrogenase; oxidoreductase domain-containing protein 1319045..1320175 Clostridium phytofermentans ISDg 5741884 YP_001558168.1 CDS Cphy_1049 NC_010001.1 1320187 1321158 D PFAM: aldo/keto reductase; KEGG: ava:Ava_4145 aldo/keto reductase; aldo/keto reductase 1320187..1321158 Clostridium phytofermentans ISDg 5741885 YP_001558169.1 CDS Cphy_1050 NC_010001.1 1321179 1322210 D PFAM: aldo/keto reductase; KEGG: cbe:Cbei_3134 aldo/keto reductase; aldo/keto reductase 1321179..1322210 Clostridium phytofermentans ISDg 5741886 YP_001558170.1 CDS Cphy_1051 NC_010001.1 1322411 1323727 R PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cdf:CD2663 signaling protein; diguanylate cyclase/phosphodiesterase complement(1322411..1323727) Clostridium phytofermentans ISDg 5741887 YP_001558171.1 CDS Cphy_1052 NC_010001.1 1323957 1324958 D PFAM: protein of unknown function DUF1113; KEGG: bad:BAD_0916 hypothetical protein; hypothetical protein 1323957..1324958 Clostridium phytofermentans ISDg 5741888 YP_001558172.1 CDS Cphy_1053 NC_010001.1 1325075 1326331 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cth:Cthe_0298 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1325075..1326331 Clostridium phytofermentans ISDg 5741889 YP_001558173.1 CDS Cphy_1054 NC_010001.1 1326734 1327660 D KEGG: csc:Csac_0437 hypothetical protein; hypothetical protein 1326734..1327660 Clostridium phytofermentans ISDg 5741890 YP_001558174.1 CDS Cphy_1055 NC_010001.1 1327816 1329480 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component; ABC transporter 1327816..1329480 Clostridium phytofermentans ISDg 5741891 YP_001558175.1 CDS Cphy_1056 NC_010001.1 1329474 1331114 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component; ABC transporter related 1329474..1331114 Clostridium phytofermentans ISDg 5741892 YP_001558176.1 CDS Cphy_1057 NC_010001.1 1331318 1332256 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpe:CPE0707 probable ABC transporter; ABC transporter 1331318..1332256 Clostridium phytofermentans ISDg 5741893 YP_001558177.1 CDS Cphy_1058 NC_010001.1 1332237 1333574 D KEGG: sab:SAB2218c probable membrane protein; ABC-type Na+ efflux pump permease component-like protein 1332237..1333574 Clostridium phytofermentans ISDg 5741894 YP_001558178.1 CDS Cphy_1059 NC_010001.1 1333598 1334971 D KEGG: bay:RBAM_010140 YhaP; Na+ efflux pump permease-like protein 1333598..1334971 Clostridium phytofermentans ISDg 5741895 YP_001558179.1 CDS Cphy_1060 NC_010001.1 1335283 1336341 D PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: smd:Smed_5753 regulatory protein LacI; LacI family transcriptional regulator 1335283..1336341 Clostridium phytofermentans ISDg 5741896 YP_001558180.1 CDS Cphy_1061 NC_010001.1 1336470 1337546 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 1336470..1337546 Clostridium phytofermentans ISDg 5741897 YP_001558181.1 CDS Cphy_1062 NC_010001.1 1337568 1339187 D PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: amt:Amet_3783 mannitol dehydrogenase, C-terminal domain; mannitol dehydrogenase 1337568..1339187 Clostridium phytofermentans ISDg 5741898 YP_001558182.1 CDS Cphy_1063 NC_010001.1 1339609 1343400 D KEGG: bth:BT_0447 S-layer related protein precursor, sialic acid-specific 9-O-acetylesterase; hypothetical protein 1339609..1343400 Clostridium phytofermentans ISDg 5741899 YP_001558183.1 CDS Cphy_1064 NC_010001.1 1343506 1344645 R PFAM: metallophosphoesterase; KEGG: cac:CAC3027 predicted phosphohydrolase; metallophosphoesterase complement(1343506..1344645) Clostridium phytofermentans ISDg 5741900 YP_001558184.1 CDS Cphy_1065 NC_010001.1 1344844 1345083 D hypothetical protein 1344844..1345083 Clostridium phytofermentans ISDg 5741901 YP_001558185.1 CDS Cphy_1066 NC_010001.1 1345519 1347243 D PFAM: Na+/H+ antiporter NhaC; KEGG: drm:Dred_1645 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 1345519..1347243 Clostridium phytofermentans ISDg 5741902 YP_001558186.1 CDS Cphy_1067 NC_010001.1 1348080 1349441 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pho:PH0577 damage-inducible protein; MATE efflux family protein 1348080..1349441 Clostridium phytofermentans ISDg 5741903 YP_001558187.1 CDS Cphy_1068 NC_010001.1 1349837 1352344 D KEGG: dsy:DSY3435 hypothetical protein; phosphate ABC transporter periplasmic component-like protein 1349837..1352344 Clostridium phytofermentans ISDg 5741904 YP_001558188.1 CDS Cphy_1069 NC_010001.1 1352436 1353353 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: cbe:Cbei_3435 protein of unknown function DUF6, transmembrane; hypothetical protein 1352436..1353353 Clostridium phytofermentans ISDg 5741905 YP_001558189.1 CDS Cphy_1070 NC_010001.1 1353365 1354357 D PFAM: protein of unknown function DUF161; KEGG: ctc:CTC02511 transporter; hypothetical protein 1353365..1354357 Clostridium phytofermentans ISDg 5741906 YP_001558190.1 CDS Cphy_1071 NC_010001.1 1354865 1357051 D PFAM: glycoside hydrolase family 26; type 3a cellulose-binding domain protein; Carbohydrate binding family 6; KEGG: chu:CHU_0353 CHU large protein; candidate b-mannanase, glycoside hydrolase family 26 protein; glycoside hydrolase family protein 1354865..1357051 Clostridium phytofermentans ISDg 5741907 YP_001558191.1 CDS Cphy_1074 NC_010001.1 1358682 1360004 D PFAM: extracellular solute-binding protein family 1; KEGG: cgt:cgR_2367 hypothetical protein; extracellular solute-binding protein 1358682..1360004 Clostridium phytofermentans ISDg 5741909 YP_001558192.1 CDS Cphy_1075 NC_010001.1 1360064 1360906 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cgb:cg2704 ABC-type sugar transport system, permease component; binding-protein-dependent transport systems inner membrane component 1360064..1360906 Clostridium phytofermentans ISDg 5741910 YP_001558193.1 CDS Cphy_1076 NC_010001.1 1360906 1361769 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cgt:cgR_2364 hypothetical protein; binding-protein-dependent transport system inner membrane protein 1360906..1361769 Clostridium phytofermentans ISDg 5741911 YP_001558194.1 CDS Cphy_1077 NC_010001.1 1361911 1362948 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cno:NT01CX_0963 catabolite control protein A; LacI family transcriptional regulator 1361911..1362948 Clostridium phytofermentans ISDg 5741912 YP_001558195.1 CDS Cphy_1078 NC_010001.1 1362979 1363560 D hypothetical protein 1362979..1363560 Clostridium phytofermentans ISDg 5741913 YP_001558196.1 CDS Cphy_1079 NC_010001.1 1363890 1364750 D KEGG: dsy:DSY0724 hypothetical protein; hypothetical protein 1363890..1364750 Clostridium phytofermentans ISDg 5741914 YP_001558197.1 CDS Cphy_1080 NC_010001.1 1364747 1365703 D PFAM: peptidase U32; KEGG: eba:ebA5191 conserved hypothetical protein, predicted peptidase U32 family; peptidase U32 1364747..1365703 Clostridium phytofermentans ISDg 5741915 YP_001558198.1 CDS Cphy_1081 NC_010001.1 1365705 1367327 R KEGG: mlo:mll9509 regulatory components of sensory transduction system; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase complement(1365705..1367327) Clostridium phytofermentans ISDg 5741916 YP_001558199.1 CDS Cphy_1082 NC_010001.1 1367343 1368686 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mmw:Mmwyl1_2733 periplasmic ligand-binding sensor protein; diguanylate cyclase complement(1367343..1368686) Clostridium phytofermentans ISDg 5741917 YP_001558200.1 CDS Cphy_1083 NC_010001.1 1368929 1369690 D PFAM: ABC transporter related; KEGG: cpr:CPR_0053 antibiotic ABC transporter, ATP-binding protein; ABC transporter 1368929..1369690 Clostridium phytofermentans ISDg 5741918 YP_001558201.1 CDS Cphy_1084 NC_010001.1 1369861 1371309 D PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: amt:Amet_4762 peptidase M1, membrane alanine aminopeptidase-like protein; peptidase M1 membrane alanine aminopeptidase 1369861..1371309 Clostridium phytofermentans ISDg 5741919 YP_001558202.1 CDS Cphy_1085 NC_010001.1 1371406 1371780 D PFAM: protein of unknown function DUF419; KEGG: pdi:BDI_2564 hypothetical protein; hypothetical protein 1371406..1371780 Clostridium phytofermentans ISDg 5741920 YP_001558203.1 CDS Cphy_1086 NC_010001.1 1372561 1373088 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: cbe:Cbei_1736 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1372561..1373088 Clostridium phytofermentans ISDg 5741921 YP_001558204.1 CDS Cphy_1087 NC_010001.1 1373171 1374694 D hypothetical protein 1373171..1374694 Clostridium phytofermentans ISDg 5741922 YP_001558205.1 CDS Cphy_1088 NC_010001.1 1375287 1376570 R KEGG: bpu:BPUM_2114 possible aminotransferase; GntR family transcriptional regulator complement(1375287..1376570) Clostridium phytofermentans ISDg 5741923 YP_001558206.1 CDS Cphy_1089 NC_010001.1 1377396 1378889 D PFAM: extracellular solute-binding protein family 1; KEGG: dsy:DSY1083 hypothetical protein; extracellular solute-binding protein 1377396..1378889 Clostridium phytofermentans ISDg 5741924 YP_001558207.1 CDS Cphy_1090 NC_010001.1 1378977 1379861 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1078 hypothetical protein; binding-protein-dependent transport systems inner membrane component 1378977..1379861 Clostridium phytofermentans ISDg 5741925 YP_001558208.1 CDS Cphy_1091 NC_010001.1 1379875 1380771 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_2125 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1379875..1380771 Clostridium phytofermentans ISDg 5741926 YP_001558209.1 CDS Cphy_1092 NC_010001.1 1380786 1381442 D KEGG: dsy:DSY1080 hypothetical protein; hypothetical protein 1380786..1381442 Clostridium phytofermentans ISDg 5741927 YP_001558210.1 CDS Cphy_1093 NC_010001.1 1382755 1384071 D TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: btk:BT9727_1674 GTP-binding protein; GTP-binding protein HflX 1382755..1384071 Clostridium phytofermentans ISDg 5741928 YP_001558211.1 CDS Cphy_1094 NC_010001.1 1384261 1384773 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: amt:Amet_3812 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1384261..1384773 Clostridium phytofermentans ISDg 5741929 YP_001558212.1 CDS Cphy_1095 NC_010001.1 1384766 1385512 D TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: gvi:glr2481 signal peptidase I; signal peptidase I 1384766..1385512 Clostridium phytofermentans ISDg 5741930 YP_001558213.1 CDS Cphy_1096 NC_010001.1 1385537 1386148 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bce:BC4940 ABC transporter ATP-binding protein; ABC transporter 1385537..1386148 Clostridium phytofermentans ISDg 5741931 YP_001558214.1 CDS Cphy_1097 NC_010001.1 1386162 1386935 D PFAM: conserved hypothetical protein; KEGG: btk:BT9727_4653 probable membrane protein; hypothetical protein 1386162..1386935 Clostridium phytofermentans ISDg 5741932 YP_001558215.1 CDS Cphy_1098 NC_010001.1 1387170 1388618 D PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cpf:CPF_0767 iron-sulfur cluster-binding protein, rieske family; FAD dependent oxidoreductase 1387170..1388618 Clostridium phytofermentans ISDg 5741933 YP_001558216.1 CDS Cphy_1099 NC_010001.1 1388945 1389466 D KEGG: cbe:Cbei_2796 Mug G:T/U mismatch-specific DNA glycosylase; G:T/U mismatch-specific DNA glycosylase 1388945..1389466 Clostridium phytofermentans ISDg 5741934 YP_001558217.1 CDS Cphy_1100 NC_010001.1 1389516 1390538 D PFAM: peptidase M42 family protein; KEGG: cpe:CPE0995 probable glucanase; peptidase M42 family protein 1389516..1390538 Clostridium phytofermentans ISDg 5741935 YP_001558218.1 CDS Cphy_1101 NC_010001.1 1390675 1391097 R hypothetical protein complement(1390675..1391097) Clostridium phytofermentans ISDg 5741936 YP_001558219.1 CDS Cphy_1102 NC_010001.1 1391306 1392175 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cac:CAC3466 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1391306..1392175) Clostridium phytofermentans ISDg 5741937 YP_001558220.1 CDS Cphy_1103 NC_010001.1 1392551 1393522 D PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: blo:BL1740 probable oxidoreductase; oxidoreductase domain-containing protein 1392551..1393522 Clostridium phytofermentans ISDg 5741938 YP_001558221.1 CDS Cphy_1104 NC_010001.1 1394178 1395782 R SMART: Parallel beta-helix repeat; KEGG: oih:OB0217 hypothetical protein; parallel beta-helix repeat-containing protein complement(1394178..1395782) Clostridium phytofermentans ISDg 5741939 YP_001558222.1 CDS Cphy_1105 NC_010001.1 1396495 1397562 D PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: cac:CAC1372 cobalamin biosynthesis enzyme CobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1396495..1397562 Clostridium phytofermentans ISDg 5741940 YP_001558223.1 CDS Cphy_1106 NC_010001.1 1397559 1398119 D KEGG: cpr:CPR_1109 hypothetical protein; hypothetical protein 1397559..1398119 Clostridium phytofermentans ISDg 5741941 YP_001558224.1 CDS Cphy_1107 NC_010001.1 1398085 1398870 D PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cbe:Cbei_1265 cobalamin-5-phosphate synthase CobS; cobalamin-5-phosphate synthase CobS 1398085..1398870 Clostridium phytofermentans ISDg 5741942 YP_001558225.1 CDS Cphy_1108 NC_010001.1 1398848 1399264 D KEGG: cpr:CPR_1111 cobalamin biosynthesis protein CobU, , truncation; hypothetical protein 1398848..1399264 Clostridium phytofermentans ISDg 5741943 YP_001558226.1 CDS Cphy_1109 NC_010001.1 1399242 1399874 D PFAM: Phosphoglycerate mutase; KEGG: cpf:CPF_1293 phosphoglycerate mutase family protein; phosphoglycerate mutase 1399242..1399874 Clostridium phytofermentans ISDg 5741944 YP_001558227.1 CDS Cphy_1110 NC_010001.1 1399902 1400921 D TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: cpr:CPR_1113 cobalamin biosynthesis protein CobD; cobalamin biosynthesis protein CobD 1399902..1400921 Clostridium phytofermentans ISDg 5741945 YP_001558228.1 CDS Cphy_1111 NC_010001.1 1401078 1402166 D PFAM: aminotransferase class I and II; KEGG: cpe:CPE1040 probable Thr-phospho decarboxylase; class I and II aminotransferase 1401078..1402166 Clostridium phytofermentans ISDg 5741946 YP_001558229.1 CDS Cphy_1112 NC_010001.1 1402184 1403725 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1402184..1403725 Clostridium phytofermentans ISDg 5741947 YP_001558230.1 CDS Cphy_1113 NC_010001.1 1403722 1404246 D PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: cbe:Cbei_1263 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 1403722..1404246 Clostridium phytofermentans ISDg 5741948 YP_001558231.1 CDS Cphy_1114 NC_010001.1 1404266 1404820 D PFAM: NADPH-dependent FMN reductase; KEGG: dsy:DSY1214 hypothetical protein; NADPH-dependent FMN reductase 1404266..1404820 Clostridium phytofermentans ISDg 5741949 YP_001558232.1 CDS Cphy_1115 NC_010001.1 1405544 1406821 D KEGG: cbf:CLI_0591 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; seryl-tRNA synthetase 1405544..1406821 Clostridium phytofermentans ISDg 5741950 YP_001558233.1 CDS Cphy_1116 NC_010001.1 1407094 1408464 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cpe:CPE0864 hypothetical protein; MATE efflux family protein 1407094..1408464 Clostridium phytofermentans ISDg 5741951 YP_001558234.1 CDS Cphy_1117 NC_010001.1 1408609 1409586 D TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: cbe:Cbei_4903 L-lactate dehydrogenase; L-lactate dehydrogenase 1408609..1409586 Clostridium phytofermentans ISDg 5741952 YP_001558235.1 CDS Cphy_1118 NC_010001.1 1410194 1411819 D PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC0558 sugar ABC transporter substrate-binding protein; extracellular solute-binding protein 1410194..1411819 Clostridium phytofermentans ISDg 5741953 YP_001558236.1 CDS Cphy_1119 NC_010001.1 1411890 1412846 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein 1411890..1412846 Clostridium phytofermentans ISDg 5741954 YP_001558237.1 CDS Cphy_1120 NC_010001.1 1412857 1413726 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1455 ABC transporter permease; binding-protein-dependent transport systems inner membrane component 1412857..1413726 Clostridium phytofermentans ISDg 5741955 YP_001558238.1 CDS Cphy_1121 NC_010001.1 1413748 1414641 D TIGRFAM: glucokinase regulatory-like protein; PFAM: sugar isomerase (SIS); KEGG: plu:plu0403 hypothetical protein; RpiR family transcriptional regulator 1413748..1414641 Clostridium phytofermentans ISDg 5741956 YP_001558239.1 CDS Cphy_1122 NC_010001.1 1414707 1415564 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: amt:Amet_4190 transcriptional regulator, RpiR family; RpiR family transcriptional regulator complement(1414707..1415564) Clostridium phytofermentans ISDg 5741957 YP_001558240.1 CDS anmK NC_010001.1 1415584 1416768 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(1415584..1416768) Clostridium phytofermentans ISDg 5741958 YP_001558241.1 CDS Cphy_1124 NC_010001.1 1416904 1418049 D PFAM: conserved hypothetical protein; KEGG: cac:CAC0185 uncharacterized membrane protein, YBBC B.subtilis ortholog; hypothetical protein 1416904..1418049 Clostridium phytofermentans ISDg 5741959 YP_001558242.1 CDS Cphy_1125 NC_010001.1 1418251 1419804 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: tte:TTE0215 Beta-glucosidase-related glycosidases; glycoside hydrolase family 3 1418251..1419804 Clostridium phytofermentans ISDg 5741960 YP_001558243.1 CDS Cphy_1126 NC_010001.1 1419857 1420798 D PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cac:CAC0183 transcriptional regulators of NagC/XylR (ROK) family, sugar kinase; BadF/BadG/BcrA/BcrD type ATPase 1419857..1420798 Clostridium phytofermentans ISDg 5741961 YP_001558244.1 CDS Cphy_1127 NC_010001.1 1420791 1421288 D KEGG: bcl:ABC0535 hypothetical protein; hypothetical protein 1420791..1421288 Clostridium phytofermentans ISDg 5741962 YP_001558245.1 CDS Cphy_1128 NC_010001.1 1421795 1422781 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH1197 ABC transporter ATP-binding protein; ABC transporter 1421795..1422781 Clostridium phytofermentans ISDg 5741963 YP_001558246.1 CDS Cphy_1129 NC_010001.1 1422828 1423619 D KEGG: sth:STH1198 ABC transporter permease; ABC transporter permease-like protein 1422828..1423619 Clostridium phytofermentans ISDg 5741964 YP_001558247.1 CDS Cphy_1130 NC_010001.1 1423603 1424397 D PFAM: protein of unknown function DUF990; KEGG: sth:STH1199 hypothetical protein; hypothetical protein 1423603..1424397 Clostridium phytofermentans ISDg 5741965 YP_001558248.1 CDS Cphy_1131 NC_010001.1 1424436 1424684 D hypothetical protein 1424436..1424684 Clostridium phytofermentans ISDg 5741966 YP_001558249.1 CDS Cphy_1132 NC_010001.1 1424925 1425929 R KEGG: rle:RL0518 solute-binding component of ABC transporter; solute-binding component of ABC transporter complement(1424925..1425929) Clostridium phytofermentans ISDg 5741967 YP_001558250.1 CDS Cphy_1133 NC_010001.1 1426063 1427142 R PFAM: inner-membrane translocator; KEGG: ctc:CTC00906 ribose transport system permease rbsC; monosaccharide-transporting ATPase complement(1426063..1427142) Clostridium phytofermentans ISDg 5741968 YP_001558251.1 CDS Cphy_1134 NC_010001.1 1427155 1428675 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component; ABC transporter complement(1427155..1428675) Clostridium phytofermentans ISDg 5741969 YP_001558252.1 CDS Cphy_1135 NC_010001.1 1429296 1429883 R KEGG: btk:BT9727_0312 conserved hypothetical protein, possible methyltransferase; hypothetical protein complement(1429296..1429883) Clostridium phytofermentans ISDg 5741970 YP_001558253.1 CDS Cphy_1136 NC_010001.1 1430300 1432699 D KEGG: nmu:Nmul_A0328 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1430300..1432699 Clostridium phytofermentans ISDg 5741971 YP_001558254.1 CDS Cphy_1137 NC_010001.1 1433004 1433864 D PFAM: NUDIX hydrolase; Zinc ribbon NADH pyrophosphatase; KEGG: lpl:lp_3123 pyrophosphatase (); NUDIX hydrolase 1433004..1433864 Clostridium phytofermentans ISDg 5741972 YP_001558255.1 CDS Cphy_1138 NC_010001.1 1434207 1435286 R TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: cth:Cthe_1516 ribosome small subunit-dependent GTPase A; ribosome small subunit-dependent GTPase A complement(1434207..1435286) Clostridium phytofermentans ISDg 5741973 YP_001558256.1 CDS Cphy_1139 NC_010001.1 1436166 1437491 D PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: cpf:CPF_0770 aspartyl-tRNA synthetase; tRNA synthetase class II (D K and N) 1436166..1437491 Clostridium phytofermentans ISDg 5741974 YP_001558257.1 CDS Cphy_1140 NC_010001.1 1437798 1438955 D PFAM: lipolytic protein G-D-S-L family; KEGG: cth:Cthe_0797 glycoside hydrolase, family 5; GDSL family lipase 1437798..1438955 Clostridium phytofermentans ISDg 5741975 YP_001558258.1 CDS Cphy_1141 NC_010001.1 1439136 1440095 D KEGG: amt:Amet_3459 hypothetical protein; hypothetical protein 1439136..1440095 Clostridium phytofermentans ISDg 5741976 YP_001558259.1 CDS Cphy_1142 NC_010001.1 1440284 1440844 D KEGG: dsy:DSY1749 hypothetical protein; hypothetical protein 1440284..1440844 Clostridium phytofermentans ISDg 5742865 YP_001558260.1 CDS Cphy_1143 NC_010001.1 1440909 1441574 D KEGG: amt:Amet_2169 hypothetical protein; hypothetical protein 1440909..1441574 Clostridium phytofermentans ISDg 5742866 YP_001558261.1 CDS Cphy_1144 NC_010001.1 1441559 1442980 D PFAM: band 7 protein; KEGG: amt:Amet_2170 band 7 protein; hypothetical protein 1441559..1442980 Clostridium phytofermentans ISDg 5742867 YP_001558262.1 CDS Cphy_1145 NC_010001.1 1443071 1444669 D PFAM: carbohydrate kinase FGGY; KEGG: cbe:Cbei_4452 carbohydrate kinase, FGGY; carbohydrate kinase FGGY 1443071..1444669 Clostridium phytofermentans ISDg 5742868 YP_001558263.1 CDS Cphy_1146 NC_010001.1 1444810 1446213 D TIGRFAM: rhamnulokinase; PFAM: carbohydrate kinase FGGY; KEGG: cbe:Cbei_0445 rhamnulokinase; rhamnulokinase 1444810..1446213 Clostridium phytofermentans ISDg 5742869 YP_001558264.1 CDS Cphy_1147 NC_010001.1 1446441 1447691 D catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase 1446441..1447691 Clostridium phytofermentans ISDg 5742870 YP_001558265.1 CDS Cphy_1148 NC_010001.1 1447986 1448957 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_0442 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 1447986..1448957 Clostridium phytofermentans ISDg 5742871 YP_001558266.1 CDS Cphy_1149 NC_010001.1 1448957 1449271 D TIGRFAM: L-rhamnose 1-epimerase; PFAM: protein of unknown function DUF718; KEGG: cbe:Cbei_0452 L-rhamnose 1-epimerase; L-rhamnose 1-epimerase 1448957..1449271 Clostridium phytofermentans ISDg 5742872 YP_001558267.1 CDS Cphy_1150 NC_010001.1 1449953 1450252 D PFAM: protein of unknown function DUF77; KEGG: dsy:DSY4448 hypothetical protein; hypothetical protein 1449953..1450252 Clostridium phytofermentans ISDg 5742873 YP_001558268.1 CDS Cphy_1151 NC_010001.1 1450218 1450982 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY4447 hypothetical protein; binding-protein-dependent transport systems inner membrane component 1450218..1450982 Clostridium phytofermentans ISDg 5742874 YP_001558269.1 CDS Cphy_1152 NC_010001.1 1451136 1452158 D PFAM: NMT1/THI5 like domain protein; KEGG: dsy:DSY4446 hypothetical protein; NMT1/THI5-like domain-containing protein 1451136..1452158 Clostridium phytofermentans ISDg 5742875 YP_001558270.1 CDS Cphy_1153 NC_010001.1 1452167 1452907 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY4445 hypothetical protein; ABC transporter 1452167..1452907 Clostridium phytofermentans ISDg 5742876 YP_001558271.1 CDS Cphy_1154 NC_010001.1 1453274 1455127 D KEGG: cac:CAC2687 RecQ protein, superfamily II DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 1453274..1455127 Clostridium phytofermentans ISDg 5742877 YP_001558272.1 CDS Cphy_1155 NC_010001.1 1455562 1461411 D PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: cpe:CPE1368 hypothetical protein; OB-fold tRNA/helicase-type nucleic acid binding-protein 1455562..1461411 Clostridium phytofermentans ISDg 5742878 YP_001558273.1 CDS Cphy_1156 NC_010001.1 1461517 1462674 D PFAM: YibE/F family protein; KEGG: ckl:CKL_1697 hypothetical protein; YibE/F family protein 1461517..1462674 Clostridium phytofermentans ISDg 5742879 YP_001558274.1 CDS Cphy_1157 NC_010001.1 1463388 1470152 D PFAM: nucleic acid binding OB-fold tRNA/helicase-type; SMART: Ig domain protein group 2 domain protein; KEGG: cpe:CPE1368 hypothetical protein; nucleic acid binding OB-fold tRNA/helicase-type 1463388..1470152 Clostridium phytofermentans ISDg 5742880 YP_001558275.1 CDS Cphy_1158 NC_010001.1 1470229 1470873 R PFAM: GCN5-related N-acetyltransferase; KEGG: mac:MA1701 acetyltransferase; N-acetyltransferase GCN5 complement(1470229..1470873) Clostridium phytofermentans ISDg 5742881 YP_001558276.1 CDS Cphy_1159 NC_010001.1 1471287 1471604 R hypothetical protein complement(1471287..1471604) Clostridium phytofermentans ISDg 5742882 YP_001558277.1 CDS Cphy_1160 NC_010001.1 1472040 1473704 D PFAM: DNA mismatch repair protein MutS domain protein; KEGG: cpr:CPR_0886 MutS domain V protein; DNA mismatch repair protein MutS domain-containing protein 1472040..1473704 Clostridium phytofermentans ISDg 5742883 YP_001558278.1 CDS Cphy_1161 NC_010001.1 1474017 1474178 R KEGG: cpf:CPF_1453 heavy-metal-associated domain protein; heavy metal-binding domain-containing protein complement(1474017..1474178) Clostridium phytofermentans ISDg 5742884 YP_001558279.1 CDS Cphy_1162 NC_010001.1 1474250 1474462 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: cbf:CLI_1767 cold shock protein; cold-shock DNA-binding domain-containing protein complement(1474250..1474462) Clostridium phytofermentans ISDg 5742885 YP_001558280.1 CDS Cphy_1163 NC_010001.1 1475031 1476437 D PFAM: glycoside hydrolase family 5; KEGG: cth:Cthe_2872 glycoside hydrolase, family 5; cellulase 1475031..1476437 Clostridium phytofermentans ISDg 5742886 YP_001558281.1 CDS Cphy_1164 NC_010001.1 1476825 1477616 D Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 1476825..1477616 Clostridium phytofermentans ISDg 5742887 YP_001558282.1 CDS Cphy_1165 NC_010001.1 1477822 1478658 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: cpr:CPR_0474 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1477822..1478658) Clostridium phytofermentans ISDg 5742888 YP_001558283.1 CDS Cphy_1166 NC_010001.1 1479120 1480112 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cbe:Cbei_4420 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 1479120..1480112 Clostridium phytofermentans ISDg 5742889 YP_001558284.1 CDS Cphy_1167 NC_010001.1 1480142 1481731 D catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 1480142..1481731 Clostridium phytofermentans ISDg 5742890 YP_001558285.1 CDS Cphy_1168 NC_010001.1 1481693 1482493 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_2943 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator complement(1481693..1482493) Clostridium phytofermentans ISDg 5742891 YP_001558286.1 CDS Cphy_1169 NC_010001.1 1482901 1484400 D PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: gtn:GTNG_1791 alpha-L-arabinofuranosidase; alpha-N-arabinofuranosidase 1482901..1484400 Clostridium phytofermentans ISDg 5742892 YP_001558287.1 CDS Cphy_1170 NC_010001.1 1484900 1485490 D hypothetical protein 1484900..1485490 Clostridium phytofermentans ISDg 5742893 YP_001558288.1 CDS Cphy_1171 NC_010001.1 1485517 1485879 D hypothetical protein 1485517..1485879 Clostridium phytofermentans ISDg 5742894 YP_001558289.1 CDS Cphy_1172 NC_010001.1 1486134 1487822 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_4466 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1486134..1487822 Clostridium phytofermentans ISDg 5742895 YP_001558290.1 CDS Cphy_1173 NC_010001.1 1488340 1488792 D hypothetical protein 1488340..1488792 Clostridium phytofermentans ISDg 5742896 YP_001558291.1 CDS Cphy_1174 NC_010001.1 1489322 1491925 D KEGG: cno:NT01CX_0498 pyruvate formate-lyase; TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; pyruvate formate-lyase 1489322..1491925 Clostridium phytofermentans ISDg 5742897 YP_001558292.1 CDS Cphy_1175 NC_010001.1 1491961 1492752 D KEGG: cno:NT01CX_0497 pyruvate formate-lyase; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein; glycyl-radical activating family protein 1491961..1492752 Clostridium phytofermentans ISDg 5742898 YP_001558293.1 CDS Cphy_1176 NC_010001.1 1492951 1493310 D PFAM: microcompartments protein; KEGG: ckl:CKL_3417 hypothetical protein; microcompartments protein 1492951..1493310 Clostridium phytofermentans ISDg 5742899 YP_001558294.1 CDS Cphy_1177 NC_010001.1 1493642 1494436 D PFAM: class II aldolase/adducin family protein; KEGG: cpf:CPF_1051 L-fuculose phosphate aldolase; class II aldolase/adducin family protein 1493642..1494436 Clostridium phytofermentans ISDg 5742900 YP_001558295.1 CDS Cphy_1178 NC_010001.1 1494484 1495872 D PFAM: Aldehyde Dehydrogenase_; KEGG: rru:Rru_A0914 aldehyde dehydrogenase; aldehyde dehydrogenase 1494484..1495872 Clostridium phytofermentans ISDg 5742901 YP_001558296.1 CDS Cphy_1179 NC_010001.1 1495895 1497094 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ooe:OEOE_0394 threonine dehydrogenase or related Zn-dependent dehydrogenase; alcohol dehydrogenase 1495895..1497094 Clostridium phytofermentans ISDg 5742902 YP_001558297.1 CDS Cphy_1180 NC_010001.1 1497110 1497424 D PFAM: microcompartments protein; KEGG: spc:Sputcn32_0210 microcompartments protein; microcompartments protein 1497110..1497424 Clostridium phytofermentans ISDg 5742903 YP_001558298.1 CDS Cphy_1181 NC_010001.1 1497514 1497816 D PFAM: microcompartments protein; KEGG: aha:AHA_1336 bacterial microcompartments family protein; microcompartments protein 1497514..1497816 Clostridium phytofermentans ISDg 5742904 YP_001558299.1 CDS Cphy_1182 NC_010001.1 1497843 1498337 D PFAM: microcompartments protein; KEGG: ckl:CKL_1072 predicted microcompartment protein; microcompartments protein 1497843..1498337 Clostridium phytofermentans ISDg 5742905 YP_001558300.1 CDS Cphy_1183 NC_010001.1 1498518 1499159 D PFAM: Propanediol utilization protein; KEGG: tma:TM0375 hypothetical protein; propanediol utilization protein 1498518..1499159 Clostridium phytofermentans ISDg 5742906 YP_001558301.1 CDS Cphy_1184 NC_010001.1 1499200 1499460 D PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: lwe:lwe1121 ethanolamine and carbon dioxide metabolism; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 1499200..1499460 Clostridium phytofermentans ISDg 5742907 YP_001558302.1 CDS Cphy_1185 NC_010001.1 1499464 1500792 D PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: ecw:EcE24377A_2294 propanediol utilization protein PduS; respiratory-chain NADH dehydrogenase domain-containing protein 1499464..1500792 Clostridium phytofermentans ISDg 5742908 YP_001558303.1 CDS Cphy_1186 NC_010001.1 1500877 1501425 D PFAM: microcompartments protein; KEGG: drm:Dred_3269 microcompartments protein; microcompartments protein 1500877..1501425 Clostridium phytofermentans ISDg 5742909 YP_001558304.1 CDS Cphy_1187 NC_010001.1 1501898 1502671 D PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: cbe:Cbei_0453 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 1501898..1502671 Clostridium phytofermentans ISDg 5742910 YP_001558305.1 CDS Cphy_1188 NC_010001.1 1502817 1505510 D PFAM: TPR repeat-containing protein; peptidase S41; RDD domain containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cth:Cthe_2680 peptidase S41; peptidase S41 1502817..1505510 Clostridium phytofermentans ISDg 5743287 YP_001558306.1 CDS Cphy_1189 NC_010001.1 1506141 1507238 D PFAM: peptidase domain protein; peptidase domain-containing protein 1506141..1507238 Clostridium phytofermentans ISDg 5743288 YP_001558307.1 CDS Cphy_1190 NC_010001.1 1507360 1507611 D KEGG: dsy:DSY0345 hypothetical protein; hypothetical protein 1507360..1507611 Clostridium phytofermentans ISDg 5743289 YP_001558308.1 CDS Cphy_1191 NC_010001.1 1507722 1508087 R PFAM: iron dependent repressor; KEGG: cbe:Cbei_3088 iron dependent repressor; DtxR family iron dependent repressor complement(1507722..1508087) Clostridium phytofermentans ISDg 5743290 YP_001558309.1 CDS Cphy_1192 NC_010001.1 1508346 1508567 D PFAM: FeoA family protein; KEGG: cbe:Cbei_4198 FeoA family protein; FeoA family protein 1508346..1508567 Clostridium phytofermentans ISDg 5743291 YP_001558310.1 CDS Cphy_1193 NC_010001.1 1508633 1508854 D PFAM: FeoA family protein; KEGG: cbe:Cbei_4197 FeoA family protein; FeoA family protein 1508633..1508854 Clostridium phytofermentans ISDg 5743292 YP_001558311.1 CDS Cphy_1194 NC_010001.1 1509047 1511191 D TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: dsy:DSY2320 ferrous iron transport protein B; ferrous iron transport protein B 1509047..1511191 Clostridium phytofermentans ISDg 5743293 YP_001558312.1 CDS Cphy_1195 NC_010001.1 1511472 1511957 D KEGG: spe:Spro_1236 ferric uptake regulator, Fur family; ferric uptake regulator family protein 1511472..1511957 Clostridium phytofermentans ISDg 5743294 YP_001558313.1 CDS Cphy_1196 NC_010001.1 1511954 1512241 D KEGG: cbe:Cbei_3087 hypothetical protein; hypothetical protein 1511954..1512241 Clostridium phytofermentans ISDg 5743295 YP_001558314.1 CDS Cphy_1197 NC_010001.1 1512878 1514881 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cno:NT01CX_0071 D-alanyl-D-alanine carboxypeptidase; peptidoglycan binding domain-containing protein 1512878..1514881 Clostridium phytofermentans ISDg 5743296 YP_001558315.1 CDS Cphy_1198 NC_010001.1 1515105 1515992 D KEGG: bca:BCE_5388 hypothetical protein; hypothetical protein 1515105..1515992 Clostridium phytofermentans ISDg 5743297 YP_001558316.1 CDS Cphy_1199 NC_010001.1 1516055 1516924 D KEGG: mma:MM_0768 glycosyltransferase; glycosyltransferase 1516055..1516924 Clostridium phytofermentans ISDg 5743298 YP_001558317.1 CDS Cphy_1200 NC_010001.1 1517016 1517669 D hypothetical protein 1517016..1517669 Clostridium phytofermentans ISDg 5743299 YP_001558318.1 CDS Cphy_1201 NC_010001.1 1517785 1519074 D KEGG: spd:SPD_0319 undecaprenylphosphate glucosephosphotransferase Cps2E; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 1517785..1519074 Clostridium phytofermentans ISDg 5743300 YP_001558319.1 CDS Cphy_1202 NC_010001.1 1519203 1519721 D PFAM: Oligosaccharide biosynthesis protein Alg14 like; KEGG: cth:Cthe_1360 polysaccharide biosynthesis protein CpsF; oligosaccharide biosynthesis protein Alg14-like protein 1519203..1519721 Clostridium phytofermentans ISDg 5743301 YP_001558320.1 CDS Cphy_1203 NC_010001.1 1519718 1520227 D PFAM: Glycosyltransferase 28 domain; KEGG: cth:Cthe_1359 glycosyltransferase 28-like protein; glycosyltransferase family 28 protein 1519718..1520227 Clostridium phytofermentans ISDg 5743302 YP_001558321.1 CDS Cphy_1204 NC_010001.1 1520250 1521479 D PFAM: glycosyl transferase group 1; KEGG: cth:Cthe_1357 glycosyl transferase, group 1; glycosyl transferase group 1 1520250..1521479 Clostridium phytofermentans ISDg 5743303 YP_001558322.1 CDS Cphy_1205 NC_010001.1 1521488 1522399 D KEGG: cth:Cthe_1356 glycosyltransferase; glycosyltransferase 1521488..1522399 Clostridium phytofermentans ISDg 5743304 YP_001558323.1 CDS Cphy_1206 NC_010001.1 1522421 1523494 D PFAM: glycosyl transferase group 1; KEGG: cth:Cthe_1357 glycosyl transferase, group 1; group 1 glycosyl transferase 1522421..1523494 Clostridium phytofermentans ISDg 5743305 YP_001558324.1 CDS Cphy_1207 NC_010001.1 1523507 1524619 D KEGG: pdi:BDI_0432 hexapeptide transferase family protein; hexapeptide transferase family protein 1523507..1524619 Clostridium phytofermentans ISDg 5743306 YP_001558325.1 CDS Cphy_1208 NC_010001.1 1524656 1525936 D PFAM: O-antigen polymerase; KEGG: bca:BCE_5389 O-antigen polymerase (wzy); O-antigen polymerase 1524656..1525936 Clostridium phytofermentans ISDg 5743307 YP_001558326.1 CDS Cphy_1209 NC_010001.1 1525949 1527427 D PFAM: polysaccharide biosynthesis protein; KEGG: gvi:gll3709 polysaccharide transporter, PST family; polysaccharide biosynthesis protein 1525949..1527427 Clostridium phytofermentans ISDg 5743308 YP_001558327.1 CDS Cphy_1210 NC_010001.1 1527470 1528762 D KEGG: drm:Dred_3027 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 1527470..1528762 Clostridium phytofermentans ISDg 5743309 YP_001558328.1 CDS Cphy_1211 NC_010001.1 1528897 1529910 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mla:Mlab_0897 hypothetical protein; NAD-dependent epimerase/dehydratase 1528897..1529910 Clostridium phytofermentans ISDg 5743310 YP_001558329.1 CDS Cphy_1212 NC_010001.1 1529939 1530664 D PFAM: PHP domain protein; KEGG: ssa:SSA_2224 phosphotyrosine-protein phosphatase; protein-tyrosine-phosphatase 1529939..1530664 Clostridium phytofermentans ISDg 5743311 YP_001558330.1 CDS Cphy_1213 NC_010001.1 1530685 1532133 D KEGG: cth:Cthe_1363 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; exopolysaccharide tyrosine-protein kinase 1530685..1532133 Clostridium phytofermentans ISDg 5743312 YP_001558331.1 CDS Cphy_1214 NC_010001.1 1532403 1532984 R KEGG: oih:OB0250 hypothetical protein; hypothetical protein complement(1532403..1532984) Clostridium phytofermentans ISDg 5743313 YP_001558332.1 CDS Cphy_1215 NC_010001.1 1533079 1534347 R KEGG: amt:Amet_1520 hypothetical protein; hypothetical protein complement(1533079..1534347) Clostridium phytofermentans ISDg 5743314 YP_001558333.1 CDS Cphy_1216 NC_010001.1 1534424 1534588 R KEGG: cbe:Cbei_2367 ribose 5-phosphate isomerase; ribose 5-phosphate isomerase complement(1534424..1534588) Clostridium phytofermentans ISDg 5743315 YP_001558334.1 CDS Cphy_1217 NC_010001.1 1535116 1535502 D KEGG: bxe:Bxe_A3319 hypothetical protein; hypothetical protein 1535116..1535502 Clostridium phytofermentans ISDg 5743316 YP_001558335.1 CDS Cphy_1218 NC_010001.1 1536445 1538409 D PFAM: DNA mismatch repair protein MutS domain protein; SMART: MutS III domain protein; KEGG: cbe:Cbei_2115 DNA mismatch repair protein MutS domain protein; DNA mismatch repair protein MutS domain-containing protein 1536445..1538409 Clostridium phytofermentans ISDg 5743317 YP_001558336.1 CDS Cphy_1219 NC_010001.1 1538568 1539884 D KEGG: amt:Amet_3796 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; xylose isomerase 1538568..1539884 Clostridium phytofermentans ISDg 5743318 YP_001558337.1 CDS Cphy_1220 NC_010001.1 1540388 1541281 D KEGG: mac:MA4292 cell surface protein; hypothetical protein 1540388..1541281 Clostridium phytofermentans ISDg 5743319 YP_001558338.1 CDS Cphy_1221 NC_010001.1 1541304 1543175 D KEGG: pfa:PFE0325w hypothetical protein; hypothetical protein 1541304..1543175 Clostridium phytofermentans ISDg 5743320 YP_001558339.1 CDS Cphy_1222 NC_010001.1 1543165 1544682 D SMART: AAA ATPase; KEGG: sun:SUN_1058 hypothetical protein; ATPase AAA 1543165..1544682 Clostridium phytofermentans ISDg 5743321 YP_001558340.1 CDS Cphy_1223 NC_010001.1 1545011 1546171 R PFAM: ABC-2 type transporter; KEGG: tde:TDE0696 membrane protein; ABC-2 type transporter complement(1545011..1546171) Clostridium phytofermentans ISDg 5743322 YP_001558341.1 CDS Cphy_1224 NC_010001.1 1546158 1547300 R PFAM: ABC-2 type transporter; KEGG: blo:BL0900 hypothetical protein; ABC-2 type transporter complement(1546158..1547300) Clostridium phytofermentans ISDg 5743323 YP_001558342.1 CDS Cphy_1225 NC_010001.1 1547312 1548244 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_1042 probable ATP binding protein of ABC transporter; ABC transporter complement(1547312..1548244) Clostridium phytofermentans ISDg 5743324 YP_001558343.1 CDS Cphy_1226 NC_010001.1 1548842 1549732 D TIGRFAM: methyltransferase; KEGG: oih:OB1239 hypothetical protein; methyltransferase 1548842..1549732 Clostridium phytofermentans ISDg 5743325 YP_001558344.1 CDS Cphy_1227 NC_010001.1 1549735 1550889 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cbh:CLC_0782 cystathionine beta-lyase; cystathionine gamma-synthase 1549735..1550889 Clostridium phytofermentans ISDg 5744832 YP_001558345.1 CDS Cphy_1228 NC_010001.1 1551030 1551938 D PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cth:Cthe_1560 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent protein beta subunit 1551030..1551938 Clostridium phytofermentans ISDg 5744833 YP_001558346.1 CDS Cphy_1229 NC_010001.1 1552260 1553165 D PFAM: regulatory protein MarR; regulatory protein LysR; KEGG: swo:Swol_0935 LysR-type transcriptional regulator; MarR family transcriptional regulator 1552260..1553165 Clostridium phytofermentans ISDg 5744834 YP_001558347.1 CDS Cphy_1230 NC_010001.1 1553670 1554713 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: efa:EF2082 ABC transporter, ATP-binding protein; ABC transporter 1553670..1554713 Clostridium phytofermentans ISDg 5744835 YP_001558348.1 CDS Cphy_1231 NC_010001.1 1554697 1555377 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_3893 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1554697..1555377 Clostridium phytofermentans ISDg 5744836 YP_001558349.1 CDS Cphy_1232 NC_010001.1 1555390 1556349 D TIGRFAM: L-lactate dehydrogenase; PFAM: UBA/THIF-type NAD/FAD binding protein; Lactate/malate dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase; KEGG: cbe:Cbei_2789 L-lactate dehydrogenase; L-lactate dehydrogenase 1555390..1556349 Clostridium phytofermentans ISDg 5744837 YP_001558350.1 CDS Cphy_1233 NC_010001.1 1556433 1557260 D PFAM: NLPA lipoprotein; KEGG: efa:EF2080 lipoprotein, YaeC family; NLPA lipoprotein 1556433..1557260 Clostridium phytofermentans ISDg 5744838 YP_001558351.1 CDS Cphy_1234 NC_010001.1 1557321 1558700 D PFAM: FAD linked oxidase domain protein; KEGG: cno:NT01CX_1612 glycolate oxidase, subunit GlcD; FAD linked oxidase domain-containing protein 1557321..1558700 Clostridium phytofermentans ISDg 5744839 YP_001558352.1 CDS Cphy_1235 NC_010001.1 1558778 1559959 D PFAM: aminotransferase class I and II; KEGG: cth:Cthe_2793 aminotransferase, class I and II; class I and II aminotransferase 1558778..1559959 Clostridium phytofermentans ISDg 5744840 YP_001558353.1 CDS Cphy_1236 NC_010001.1 1560165 1560710 D TIGRFAM: metal dependent phophohydrolase; KEGG: cbh:CLC_0680 HDIG domain protein; metal dependent phophohydrolase 1560165..1560710 Clostridium phytofermentans ISDg 5744842 YP_001558354.1 CDS Cphy_1237 NC_010001.1 1561213 1562964 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_3147 ABC transporter related protein; ABC transporter 1561213..1562964 Clostridium phytofermentans ISDg 5744843 YP_001558355.1 CDS Cphy_1238 NC_010001.1 1562954 1564849 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_3148 ABC transporter related protein; ABC transporter 1562954..1564849 Clostridium phytofermentans ISDg 5744844 YP_001558356.1 CDS Cphy_1239 NC_010001.1 1565060 1566136 D PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: tde:TDE0148 histidine kinase-related ATPase; integral membrane sensor signal transduction histidine kinase 1565060..1566136 Clostridium phytofermentans ISDg 5744845 YP_001558357.1 CDS Cphy_1240 NC_010001.1 1566225 1566848 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: tde:TDE0149 DNA-binding response regulator; two component LuxR family transcriptional regulator 1566225..1566848 Clostridium phytofermentans ISDg 5744846 YP_001558358.1 CDS Cphy_1241 NC_010001.1 1566938 1567600 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ckl:CKL_3394 hypothetical protein; two component transcriptional regulator 1566938..1567600 Clostridium phytofermentans ISDg 5744847 YP_001558359.1 CDS Cphy_1242 NC_010001.1 1567627 1568622 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cdf:CD1960 two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1567627..1568622 Clostridium phytofermentans ISDg 5744848 YP_001558360.1 CDS Cphy_1243 NC_010001.1 1568748 1569437 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spj:MGAS2096_Spy1111 ABC transporter ATP-binding protein; ABC transporter 1568748..1569437 Clostridium phytofermentans ISDg 5744849 YP_001558361.1 CDS Cphy_1244 NC_010001.1 1569430 1571748 D PFAM: protein of unknown function DUF214; KEGG: cdf:CD2533 ABC transporter, permease; hypothetical protein 1569430..1571748 Clostridium phytofermentans ISDg 5744850 YP_001558362.1 CDS Cphy_1245 NC_010001.1 1571956 1573083 D TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: ctc:CTC00578 exonuclease sbcD; nuclease SbcCD subunit D 1571956..1573083 Clostridium phytofermentans ISDg 5744851 YP_001558363.1 CDS Cphy_1246 NC_010001.1 1573127 1576243 D PFAM: SMC domain protein; KEGG: ctc:CTC00579 exonuclease sbcC; SMC domain-containing protein 1573127..1576243 Clostridium phytofermentans ISDg 5744852 YP_001558364.1 CDS Cphy_1247 NC_010001.1 1576393 1577199 R KEGG: cac:CAC2572 possible aminoglycoside phosphotransferase (protein kinase related), diverged; hypothetical protein complement(1576393..1577199) Clostridium phytofermentans ISDg 5744853 YP_001558365.1 CDS spoVFB NC_010001.1 1577527 1578117 R involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme; dipicolinate synthase subunit B complement(1577527..1578117) Clostridium phytofermentans ISDg 5744854 YP_001558366.1 CDS Cphy_1249 NC_010001.1 1578134 1579018 R catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance; dipicolinate synthase subunit A complement(1578134..1579018) Clostridium phytofermentans ISDg 5744855 YP_001558367.1 CDS Cphy_1250 NC_010001.1 1579431 1580060 D PFAM: Phosphoglycerate mutase; KEGG: pth:PTH_1315 fructose-2,6-bisphosphatase; phosphoglycerate mutase 1579431..1580060 Clostridium phytofermentans ISDg 5744856 YP_001558368.1 CDS Cphy_1251 NC_010001.1 1580100 1580870 R TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; KEGG: cpf:CPF_0719 HAD hydrolase, IIB family; cof family hydrolase complement(1580100..1580870) Clostridium phytofermentans ISDg 5744857 YP_001558369.1 CDS Cphy_1252 NC_010001.1 1581246 1582583 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: msi:Msm_0152 Na+-driven multidrug efflux pump (MATE family), NorM; MATE efflux family protein 1581246..1582583 Clostridium phytofermentans ISDg 5744858 YP_001558370.1 CDS Cphy_1253 NC_010001.1 1582741 1583919 D PFAM: metallophosphoesterase; KEGG: bcl:ABC0966 nucleotidase; metallophosphoesterase 1582741..1583919 Clostridium phytofermentans ISDg 5744859 YP_001558371.1 CDS Cphy_1254 NC_010001.1 1584256 1585329 D PFAM: lipolytic protein G-D-S-L family; KEGG: cth:Cthe_0797 glycoside hydrolase, family 5; GDSL family lipase 1584256..1585329 Clostridium phytofermentans ISDg 5744860 YP_001558372.1 CDS Cphy_1255 NC_010001.1 1585436 1585960 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cno:NT01CX_0653 peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl isomerase complement(1585436..1585960) Clostridium phytofermentans ISDg 5744861 YP_001558373.1 CDS Cphy_1256 NC_010001.1 1586394 1587647 D PFAM: protein of unknown function DUF1063; KEGG: tde:TDE2144 hypothetical protein; hypothetical protein 1586394..1587647 Clostridium phytofermentans ISDg 5744862 YP_001558374.1 CDS Cphy_1257 NC_010001.1 1587695 1588855 D PFAM: Extracellular ligand-binding receptor; KEGG: amt:Amet_4119 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1587695..1588855 Clostridium phytofermentans ISDg 5744863 YP_001558375.1 CDS Cphy_1258 NC_010001.1 1588942 1589817 D PFAM: inner-membrane translocator; KEGG: amt:Amet_4118 inner-membrane translocator; inner-membrane translocator 1588942..1589817 Clostridium phytofermentans ISDg 5744864 YP_001558376.1 CDS Cphy_1259 NC_010001.1 1589822 1590895 D PFAM: inner-membrane translocator; KEGG: amt:Amet_4117 inner-membrane translocator; inner-membrane translocator 1589822..1590895 Clostridium phytofermentans ISDg 5744865 YP_001558377.1 CDS Cphy_1260 NC_010001.1 1590919 1591689 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4116 ABC transporter related; ABC transporter 1590919..1591689 Clostridium phytofermentans ISDg 5744866 YP_001558378.1 CDS Cphy_1261 NC_010001.1 1591682 1592389 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4115 ABC transporter related; ABC transporter 1591682..1592389 Clostridium phytofermentans ISDg 5744867 YP_001558379.1 CDS Cphy_1262 NC_010001.1 1592405 1593403 D with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 1592405..1593403 Clostridium phytofermentans ISDg 5744868 YP_001558380.1 CDS Cphy_1263 NC_010001.1 1593416 1594063 D TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: amt:Amet_4113 dihydroxyacetone kinase, L subunit; dihydroxyacetone kinase subunit DhaL 1593416..1594063 Clostridium phytofermentans ISDg 5744869 YP_001558381.1 CDS Cphy_1264 NC_010001.1 1594143 1594628 D KEGG: amt:Amet_4120 hypothetical protein; hypothetical protein 1594143..1594628 Clostridium phytofermentans ISDg 5744870 YP_001558382.1 CDS Cphy_1265 NC_010001.1 1594834 1596525 D PFAM: helix-turn-helix Fis-type; Resolvase helix-turn-helix domain protein; KEGG: amt:Amet_4111 sigma54 specific transcriptional regulator, Fis family; Fis family transcriptional regulator 1594834..1596525 Clostridium phytofermentans ISDg 5744871 YP_001558383.1 CDS Cphy_1266 NC_010001.1 1596867 1597529 D hypothetical protein 1596867..1597529 Clostridium phytofermentans ISDg 5744872 YP_001558384.1 CDS Cphy_1267 NC_010001.1 1597743 1598132 D hypothetical protein 1597743..1598132 Clostridium phytofermentans ISDg 5744873 YP_001558385.1 CDS Cphy_1268 NC_010001.1 1598302 1598955 R hypothetical protein complement(1598302..1598955) Clostridium phytofermentans ISDg 5744874 YP_001558386.1 CDS Cphy_1269 NC_010001.1 1599234 1600040 D hypothetical protein 1599234..1600040 Clostridium phytofermentans ISDg 5744875 YP_001558387.1 CDS Cphy_1270 NC_010001.1 1600203 1600520 D PFAM: transcriptional regulator PadR family protein; KEGG: tde:TDE1858 transcriptional regulator, PadR family; PadR-like family transcriptional regulator 1600203..1600520 Clostridium phytofermentans ISDg 5744876 YP_001558388.1 CDS Cphy_1271 NC_010001.1 1600521 1601426 D KEGG: tde:TDE1860 hypothetical protein; hypothetical protein 1600521..1601426 Clostridium phytofermentans ISDg 5744877 YP_001558389.1 CDS Cphy_1272 NC_010001.1 1601423 1602289 D KEGG: tde:TDE1862 hypothetical protein; hypothetical protein 1601423..1602289 Clostridium phytofermentans ISDg 5744878 YP_001558390.1 CDS Cphy_1273 NC_010001.1 1602328 1602504 D PFAM: PspC domain protein; KEGG: cac:CAC2659 stress-responsive transcriptional regulator PspC; phage shock protein C, PspC 1602328..1602504 Clostridium phytofermentans ISDg 5744879 YP_001558391.1 CDS argS NC_010001.1 1602923 1604707 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1602923..1604707 Clostridium phytofermentans ISDg 5744880 YP_001558392.1 CDS Cphy_1275 NC_010001.1 1604941 1606257 D PFAM: protein of unknown function DUF815; SMART: AAA ATPase; KEGG: mst:Msp_1313 predicted ATPase; hypothetical protein 1604941..1606257 Clostridium phytofermentans ISDg 5744881 YP_001558393.1 CDS Cphy_1276 NC_010001.1 1606560 1607687 D KEGG: pna:Pnap_3735 hypothetical protein; hypothetical protein 1606560..1607687 Clostridium phytofermentans ISDg 5744882 YP_001558394.1 CDS Cphy_1277 NC_010001.1 1607799 1608065 R KEGG: cbe:Cbei_2068 glutaredoxin-like protein; glutaredoxin-like protein complement(1607799..1608065) Clostridium phytofermentans ISDg 5744883 YP_001558395.1 CDS Cphy_1278 NC_010001.1 1608257 1608940 D KEGG: pth:PTH_2361 predicted secreted protein; hypothetical protein 1608257..1608940 Clostridium phytofermentans ISDg 5744884 YP_001558396.1 CDS Cphy_1279 NC_010001.1 1609133 1609510 D PFAM: regulatory protein GntR HTH; KEGG: drm:Dred_1515 regulatory protein GntR, HTH; GntR family transcriptional regulator 1609133..1609510 Clostridium phytofermentans ISDg 5744885 YP_001558397.1 CDS Cphy_1280 NC_010001.1 1609598 1610284 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbf:CLI_0638 ABC transporter, ATP-binding protein; ABC transporter 1609598..1610284 Clostridium phytofermentans ISDg 5744886 YP_001558398.1 CDS Cphy_1281 NC_010001.1 1610306 1611049 D KEGG: cno:NT01CX_0786 hypothetical protein; hypothetical protein 1610306..1611049 Clostridium phytofermentans ISDg 5744887 YP_001558399.1 CDS Cphy_1282 NC_010001.1 1611056 1611481 R hypothetical protein complement(1611056..1611481) Clostridium phytofermentans ISDg 5744888 YP_001558400.1 CDS Cphy_1283 NC_010001.1 1611686 1612924 D PFAM: conserved hypothetical protein; KEGG: dsy:DSY4682 hypothetical protein; hypothetical protein 1611686..1612924 Clostridium phytofermentans ISDg 5744889 YP_001558401.1 CDS Cphy_1284 NC_010001.1 1613051 1613686 D KEGG: gtn:GTNG_1989 hypothetical protein; hypothetical protein 1613051..1613686 Clostridium phytofermentans ISDg 5744890 YP_001558402.1 CDS Cphy_1285 NC_010001.1 1613797 1614369 D hypothetical protein 1613797..1614369 Clostridium phytofermentans ISDg 5744891 YP_001558403.1 CDS Cphy_1286 NC_010001.1 1614415 1615575 D enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 1614415..1615575 Clostridium phytofermentans ISDg 5744892 YP_001558404.1 CDS Cphy_1287 NC_010001.1 1615659 1616342 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bca:BCE_2749 transcription response regulator-like protein; two component transcriptional regulator 1615659..1616342 Clostridium phytofermentans ISDg 5744893 YP_001558405.1 CDS Cphy_1288 NC_010001.1 1616339 1617916 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: efa:EF2298 sensor histidine kinase VanSB; integral membrane sensor signal transduction histidine kinase 1616339..1617916 Clostridium phytofermentans ISDg 5744894 YP_001558406.1 CDS Cphy_1289 NC_010001.1 1618232 1619131 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lme:LEUM_0415 ABC-type multidrug transport system, ATPase component; ABC transporter 1618232..1619131 Clostridium phytofermentans ISDg 5744895 YP_001558407.1 CDS Cphy_1290 NC_010001.1 1619112 1619900 D PFAM: ABC-2 type transporter; KEGG: lme:LEUM_0416 hypothetical protein; ABC-2 type transporter 1619112..1619900 Clostridium phytofermentans ISDg 5744896 YP_001558408.1 CDS Cphy_1291 NC_010001.1 1620273 1620806 D PFAM: GCN5-related N-acetyltransferase; KEGG: bpu:BPUM_0138 ribosomal protein acetyltransferase; N-acetyltransferase GCN5 1620273..1620806 Clostridium phytofermentans ISDg 5744897 YP_001558409.1 CDS Cphy_1292 NC_010001.1 1620790 1621257 D KEGG: bsu:BG12539 hypothetical protein; hypothetical protein 1620790..1621257 Clostridium phytofermentans ISDg 5744898 YP_001558410.1 CDS Cphy_1293 NC_010001.1 1621422 1622306 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cbe:Cbei_0517 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1621422..1622306) Clostridium phytofermentans ISDg 5744899 YP_001558411.1 CDS Cphy_1294 NC_010001.1 1622469 1622972 D PFAM: nitroreductase; KEGG: cac:CAC1551 nitroreductase family protein; nitroreductase 1622469..1622972 Clostridium phytofermentans ISDg 5744900 YP_001558412.1 CDS Cphy_1295 NC_010001.1 1623053 1623280 D hypothetical protein 1623053..1623280 Clostridium phytofermentans ISDg 5744901 YP_001558413.1 CDS Cphy_1296 NC_010001.1 1623300 1623773 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: dsy:DSY1235 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(1623300..1623773) Clostridium phytofermentans ISDg 5744902 YP_001558414.1 CDS Cphy_1297 NC_010001.1 1623912 1625354 D PFAM: regulatory protein GntR HTH; KEGG: dsy:DSY1236 hypothetical protein; GntR family transcriptional regulator 1623912..1625354 Clostridium phytofermentans ISDg 5744903 YP_001558415.1 CDS Cphy_1299 NC_010001.1 1625565 1626725 R KEGG: bce:BC3450 hypothetical membrane spanning protein; hypothetical protein complement(1625565..1626725) Clostridium phytofermentans ISDg 5744905 YP_001558416.1 CDS Cphy_1300 NC_010001.1 1626827 1627501 D PFAM: cyclic nucleotide-binding; KEGG: cbh:CLC_1580 cyclic nucleotide-binding domain protein; cyclic nucleotide-binding protein 1626827..1627501 Clostridium phytofermentans ISDg 5744906 YP_001558417.1 CDS Cphy_1301 NC_010001.1 1627659 1628696 R PFAM: Pectinesterase; KEGG: cac:CAC3373 pectin methylesterase; pectinesterase complement(1627659..1628696) Clostridium phytofermentans ISDg 5744907 YP_001558418.1 CDS Cphy_1302 NC_010001.1 1629279 1630811 D PFAM: RNA methylase; KEGG: rca:Rcas_2582 RNA methylase; RNA methylase 1629279..1630811 Clostridium phytofermentans ISDg 5744908 YP_001558419.1 CDS Cphy_1303 NC_010001.1 1630880 1631782 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 1630880..1631782 Clostridium phytofermentans ISDg 5744909 YP_001558420.1 CDS Cphy_1304 NC_010001.1 1631948 1632982 D KEGG: pla:Plav_0415 hypothetical protein; hypothetical protein 1631948..1632982 Clostridium phytofermentans ISDg 5744910 YP_001558421.1 CDS Cphy_1305 NC_010001.1 1633167 1633946 D KEGG: ssv:SSU98_0050 hypothetical protein; hypothetical protein 1633167..1633946 Clostridium phytofermentans ISDg 5744911 YP_001558422.1 CDS Cphy_1306 NC_010001.1 1633960 1634880 D KEGG: cbf:CLI_0627 hypothetical protein; hypothetical protein 1633960..1634880 Clostridium phytofermentans ISDg 5744912 YP_001558423.1 CDS Cphy_1307 NC_010001.1 1634993 1635727 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: cth:Cthe_3110 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD binding protein 1634993..1635727 Clostridium phytofermentans ISDg 5744913 YP_001558424.1 CDS Cphy_1308 NC_010001.1 1636790 1640047 D PFAM: APHP domain protein; KEGG: fjo:Fjoh_3203 Ig domain protein, group 2 domain protein; APHP domain-containing protein 1636790..1640047 Clostridium phytofermentans ISDg 5744914 YP_001558425.1 CDS Cphy_1309 NC_010001.1 1640550 1641230 D PFAM: Vitamin B12 dependent methionine synthase activation region; KEGG: amt:Amet_3374 vitamin B12 dependent methionine synthase, activation region; vitamin B12 dependent methionine synthase activation region 1640550..1641230 Clostridium phytofermentans ISDg 5744915 YP_001558426.1 CDS Cphy_1310 NC_010001.1 1641409 1642101 R PFAM: YhhN family protein; KEGG: tme:Tmel_1642 YhhN family protein; hypothetical protein complement(1641409..1642101) Clostridium phytofermentans ISDg 5744916 YP_001558427.1 CDS Cphy_1311 NC_010001.1 1642247 1642690 R PFAM: protein of unknown function DUF523; KEGG: cac:CAC2339 uncharacterized protein, YBBK B.subtilis ortholog; hypothetical protein complement(1642247..1642690) Clostridium phytofermentans ISDg 5744917 YP_001558428.1 CDS Cphy_1312 NC_010001.1 1643002 1643706 D PFAM: protein of unknown function DUF45; KEGG: cpf:CPF_0800 hypothetical protein; hypothetical protein 1643002..1643706 Clostridium phytofermentans ISDg 5744918 YP_001558429.1 CDS Cphy_1313 NC_010001.1 1643820 1644518 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cbe:Cbei_0309 GntR domain protein; regulatory protein GntR HTH 1643820..1644518 Clostridium phytofermentans ISDg 5744919 YP_001558430.1 CDS Cphy_1314 NC_010001.1 1644959 1646134 R PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(1644959..1646134) Clostridium phytofermentans ISDg 5744920 YP_001558431.1 CDS Cphy_1315 NC_010001.1 1646353 1647141 D PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: cbe:Cbei_0310 electron transfer flavoprotein, alpha/beta-subunit-like protein; electron transfer flavoprotein alpha/beta-subunit 1646353..1647141 Clostridium phytofermentans ISDg 5744921 YP_001558432.1 CDS Cphy_1316 NC_010001.1 1647155 1648360 D PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: cbe:Cbei_0311 electron transfer flavoprotein, alpha subunit-like protein; electron transfer flavoprotein alpha subunit 1647155..1648360 Clostridium phytofermentans ISDg 5744922 YP_001558433.1 CDS Cphy_1317 NC_010001.1 1648378 1649763 D PFAM: FAD linked oxidase domain protein; KEGG: cbe:Cbei_0312 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 1648378..1649763 Clostridium phytofermentans ISDg 5744923 YP_001558434.1 CDS Cphy_1318 NC_010001.1 1649861 1651192 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_2056 MATE efflux family protein; MATE efflux family protein complement(1649861..1651192) Clostridium phytofermentans ISDg 5743705 YP_001558435.1 CDS Cphy_1319 NC_010001.1 1651275 1651745 R hypothetical protein complement(1651275..1651745) Clostridium phytofermentans ISDg 5743706 YP_001558436.1 CDS Cphy_1320 NC_010001.1 1652242 1652442 D PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cbf:CLI_2367 small, acid-soluble spore protein; small acid-soluble spore protein alpha/beta type 1652242..1652442 Clostridium phytofermentans ISDg 5743707 YP_001558437.1 CDS Cphy_1321 NC_010001.1 1652972 1653529 D TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein; KEGG: cdf:CD2559 hypothetical protein; methyltransferase 1652972..1653529 Clostridium phytofermentans ISDg 5743708 YP_001558438.1 CDS Cphy_1322 NC_010001.1 1653563 1654054 D KEGG: tte:TTE1486 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 1653563..1654054 Clostridium phytofermentans ISDg 5743709 YP_001558439.1 CDS Cphy_1323 NC_010001.1 1654056 1654724 D KEGG: tte:TTE1485 archaeal/vacuolar-type H+-ATPase subunit H; hypothetical protein 1654056..1654724 Clostridium phytofermentans ISDg 5743710 YP_001558440.1 CDS Cphy_1324 NC_010001.1 1654847 1655935 R PFAM: nucleoside recognition domain protein; KEGG: tte:TTE1484 hypothetical protein; nucleoside recognition domain-containing protein complement(1654847..1655935) Clostridium phytofermentans ISDg 5743711 YP_001558441.1 CDS Cphy_1325 NC_010001.1 1655986 1657239 R PFAM: protein of unknown function DUF795; KEGG: amt:Amet_2764 protein of unknown function DUF795; hypothetical protein complement(1655986..1657239) Clostridium phytofermentans ISDg 5743712 YP_001558442.1 CDS Cphy_1326 NC_010001.1 1657582 1658577 D KEGG: cth:Cthe_1029 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; phosphate acetyltransferase 1657582..1658577 Clostridium phytofermentans ISDg 5743713 YP_001558443.1 CDS Cphy_1327 NC_010001.1 1658810 1659997 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1658810..1659997 Clostridium phytofermentans ISDg 5743714 YP_001558444.1 CDS Cphy_1328 NC_010001.1 1660204 1660731 D PFAM: protein of unknown function DUF177; KEGG: cac:CAC1744 predicted Zn-finger-like protein, possible nucleic acid binding; hypothetical protein 1660204..1660731 Clostridium phytofermentans ISDg 5743715 YP_001558445.1 CDS Cphy_1329 NC_010001.1 1660735 1660920 D TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: chy:CHY_1453 ribosomal protein L32; 50S ribosomal protein L32 1660735..1660920 Clostridium phytofermentans ISDg 5743716 YP_001558446.1 CDS Cphy_1330 NC_010001.1 1661074 1662252 R KEGG: cac:CAC0978 possible elongation subunit of DNA-dependent DNA polymerase; exonuclease-like protein complement(1661074..1662252) Clostridium phytofermentans ISDg 5743717 YP_001558447.1 CDS Cphy_1331 NC_010001.1 1662522 1664081 D PFAM: phospholipase D/Transphosphatidylase; KEGG: dsy:DSY4076 hypothetical protein; phospholipase D/transphosphatidylase 1662522..1664081 Clostridium phytofermentans ISDg 5743718 YP_001558448.1 CDS Cphy_1332 NC_010001.1 1664100 1664351 D KEGG: cth:Cthe_2247 regulatory protein, MerR; regulatory protein MerR 1664100..1664351 Clostridium phytofermentans ISDg 5743719 YP_001558449.1 CDS ruvA NC_010001.1 1664452 1665063 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1664452..1665063 Clostridium phytofermentans ISDg 5743720 YP_001558450.1 CDS ruvB NC_010001.1 1665084 1666094 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1665084..1666094 Clostridium phytofermentans ISDg 5743721 YP_001558451.1 CDS Cphy_1335 NC_010001.1 1666260 1666673 D PFAM: protein of unknown function DUF710; KEGG: cth:Cthe_2088 protein of unknown function DUF710; hypothetical protein 1666260..1666673 Clostridium phytofermentans ISDg 5743722 YP_001558452.1 CDS Cphy_1336 NC_010001.1 1667018 1669471 D PFAM: peptidase U32; KEGG: ctc:CTC02275 protease; peptidase U32 1667018..1669471 Clostridium phytofermentans ISDg 5743723 YP_001558453.1 CDS Cphy_1337 NC_010001.1 1669623 1672541 D PFAM: cell cycle protein; penicillin-binding protein transpeptidase; KEGG: ckl:CKL_3568 predicted peptidoglycan synthetase; penicillin-binding protein transpeptidase 1669623..1672541 Clostridium phytofermentans ISDg 5743724 YP_001558454.1 CDS Cphy_1338 NC_010001.1 1672882 1673334 D PFAM: NUDIX hydrolase; KEGG: cdf:CD3398 DNA repair protein (nucleotide pyrophosphatase); NUDIX hydrolase 1672882..1673334 Clostridium phytofermentans ISDg 5743725 YP_001558455.1 CDS Cphy_1339 NC_010001.1 1673474 1674133 D hypothetical protein 1673474..1674133 Clostridium phytofermentans ISDg 5743726 YP_001558456.1 CDS Cphy_1340 NC_010001.1 1674206 1674457 D KEGG: cbf:CLI_0911 hypothetical protein; hypothetical protein 1674206..1674457 Clostridium phytofermentans ISDg 5743727 YP_001558457.1 CDS Cphy_1341 NC_010001.1 1674560 1674841 R KEGG: cth:Cthe_0851 hypothetical protein; hypothetical protein complement(1674560..1674841) Clostridium phytofermentans ISDg 5743728 YP_001558458.1 CDS Cphy_1342 NC_010001.1 1675200 1675709 D PFAM: GtrA family protein; KEGG: ldb:Ldb1931 teichoic acid glycosylation protein; GtrA family protein 1675200..1675709 Clostridium phytofermentans ISDg 5743729 YP_001558459.1 CDS Cphy_1343 NC_010001.1 1675739 1676941 D PFAM: RNA methylase; protein of unknown function Met10; KEGG: cpr:CPR_2555 methyltransferase; RNA methylase 1675739..1676941 Clostridium phytofermentans ISDg 5743730 YP_001558460.1 CDS Cphy_1344 NC_010001.1 1677124 1678152 R KEGG: cth:Cthe_0634 serine/threonine protein kinase; hypothetical protein complement(1677124..1678152) Clostridium phytofermentans ISDg 5743731 YP_001558461.1 CDS Cphy_1345 NC_010001.1 1678757 1679896 D PFAM: prephenate dehydratase; Chorismate mutase; KEGG: ckl:CKL_0789 PheA; prephenate dehydratase 1678757..1679896 Clostridium phytofermentans ISDg 5743732 YP_001558462.1 CDS Cphy_1346 NC_010001.1 1680034 1681560 D PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: bld:BLi01390 serine protease Do (heat-shock protein); RBL00645; peptidase S1 and S6 chymotrypsin/Hap 1680034..1681560 Clostridium phytofermentans ISDg 5743733 YP_001558463.1 CDS Cphy_1347 NC_010001.1 1681633 1682625 D PFAM: NMT1/THI5 like domain protein; KEGG: cth:Cthe_2575 hypothetical protein; NMT1/THI5-like domain-containing protein 1681633..1682625 Clostridium phytofermentans ISDg 5743734 YP_001558464.1 CDS Cphy_1349 NC_010001.1 1683258 1683596 D PFAM: protein of unknown function DUF970; KEGG: cpr:CPR_2445 hypothetical protein; hypothetical protein 1683258..1683596 Clostridium phytofermentans ISDg 5743736 YP_001558465.1 CDS Cphy_1350 NC_010001.1 1683866 1684975 R PFAM: acyltransferase 3; KEGG: ckl:CKL_3622 hypothetical protein; acyltransferase complement(1683866..1684975) Clostridium phytofermentans ISDg 5743737 YP_001558466.1 CDS Cphy_1351 NC_010001.1 1685464 1685871 R hypothetical protein complement(1685464..1685871) Clostridium phytofermentans ISDg 5743738 YP_001558467.1 CDS Cphy_1352 NC_010001.1 1686019 1688442 R PFAM: UvrD/REP helicase; KEGG: cth:Cthe_2876 ATP-dependent DNA helicase PcrA; UvrD/REP helicase complement(1686019..1688442) Clostridium phytofermentans ISDg 5743739 YP_001558468.1 CDS Cphy_1353 NC_010001.1 1688857 1689495 D PFAM: Domain of unknown function DUF1836; KEGG: cbf:CLI_1672 hypothetical protein; hypothetical protein 1688857..1689495 Clostridium phytofermentans ISDg 5743740 YP_001558469.1 CDS Cphy_1354 NC_010001.1 1689650 1689967 R TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor; KEGG: tte:TTE0603 hypothetical protein; TrpR-like protein YerC/YecD complement(1689650..1689967) Clostridium phytofermentans ISDg 5743741 YP_001558470.1 CDS Cphy_1355 NC_010001.1 1690386 1691777 D TIGRFAM: RNA methyltransferase, TrmA family; PFAM: methyltransferase small; (Uracil-5)-methyltransferase; KEGG: amt:Amet_3671 RNA methyltransferase, TrmA family; RNA methyltransferase 1690386..1691777 Clostridium phytofermentans ISDg 5743742 YP_001558471.1 CDS Cphy_1356 NC_010001.1 1692134 1694635 D PFAM: beta-lactamase domain protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mbu:Mbur_2318 tetratricopeptide protein; beta-lactamase domain-containing protein 1692134..1694635 Clostridium phytofermentans ISDg 5743743 YP_001558472.1 CDS Cphy_1358 NC_010001.1 1695458 1695589 D KEGG: sma:SAV1809 dipeptidase; hypothetical protein 1695458..1695589 Clostridium phytofermentans ISDg 5743745 YP_001558473.1 CDS Cphy_1359 NC_010001.1 1696110 1696454 D PFAM: regulatory protein ArsR; KEGG: dsy:DSY1048 hypothetical protein; ArsR family transcriptional regulator 1696110..1696454 Clostridium phytofermentans ISDg 5743746 YP_001558474.1 CDS Cphy_1360 NC_010001.1 1696515 1697222 D KEGG: dsy:DSY1049 hypothetical protein; hypothetical protein 1696515..1697222 Clostridium phytofermentans ISDg 5743747 YP_001558475.1 CDS Cphy_1361 NC_010001.1 1697552 1698742 D KEGG: dsy:DSY3684 hypothetical protein; hypothetical protein 1697552..1698742 Clostridium phytofermentans ISDg 5743748 YP_001558476.1 CDS Cphy_1362 NC_010001.1 1699084 1702356 R PFAM: protein of unknown function DUF214; KEGG: lmf:LMOf2365_1233 ABC transporter, permease; hypothetical protein complement(1699084..1702356) Clostridium phytofermentans ISDg 5743749 YP_001558477.1 CDS Cphy_1363 NC_010001.1 1702350 1703054 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC0822 ABC transporter, ATP-binding protein; ABC transporter complement(1702350..1703054) Clostridium phytofermentans ISDg 5743750 YP_001558478.1 CDS Cphy_1364 NC_010001.1 1703262 1703882 D PFAM: regulatory protein TetR; KEGG: cbe:Cbei_3107 transcriptional regulator, TetR family; TetR family transcriptional regulator 1703262..1703882 Clostridium phytofermentans ISDg 5743751 YP_001558479.1 CDS Cphy_1365 NC_010001.1 1704206 1704727 D PFAM: bifunctional deaminase-reductase domain protein; KEGG: cbh:CLC_0313 RibD domain protein; deaminase-reductase domain-containing protein 1704206..1704727 Clostridium phytofermentans ISDg 5742315 YP_001558480.1 CDS Cphy_1366 NC_010001.1 1704795 1706663 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mst:Msp_0678 predicted cation transport ATPase; heavy metal translocating P-type ATPase complement(1704795..1706663) Clostridium phytofermentans ISDg 5742316 YP_001558481.1 CDS Cphy_1367 NC_010001.1 1706829 1707374 D PFAM: regulatory protein TetR; KEGG: sgo:SGO_0088 transcription regulator, AcrR family; TetR family transcriptional regulator 1706829..1707374 Clostridium phytofermentans ISDg 5742317 YP_001558482.1 CDS Cphy_1368 NC_010001.1 1708044 1709255 D KEGG: cth:Cthe_2525 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; glutamyl-tRNA reductase 1708044..1709255 Clostridium phytofermentans ISDg 5742318 YP_001558483.1 CDS Cphy_1369 NC_010001.1 1709268 1709735 D TIGRFAM: siroheme synthase; KEGG: cth:Cthe_2526 precorrin-2 oxidase / ferrochelatase; siroheme synthase 1709268..1709735 Clostridium phytofermentans ISDg 5742319 YP_001558484.1 CDS hemC NC_010001.1 1709741 1710628 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1709741..1710628 Clostridium phytofermentans ISDg 5742320 YP_001558485.1 CDS Cphy_1371 NC_010001.1 1710625 1712133 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: cth:Cthe_2528 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 1710625..1712133 Clostridium phytofermentans ISDg 5742321 YP_001558486.1 CDS Cphy_1372 NC_010001.1 1712170 1713165 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1712170..1713165 Clostridium phytofermentans ISDg 5742322 YP_001558487.1 CDS Cphy_1373 NC_010001.1 1713165 1714448 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1713165..1714448 Clostridium phytofermentans ISDg 5742323 YP_001558488.1 CDS Cphy_1374 NC_010001.1 1714606 1715763 D TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: amt:Amet_0070 cobalamin biosynthesis protein CbiD; cobalamin biosynthesis protein CbiD 1714606..1715763 Clostridium phytofermentans ISDg 5742324 YP_001558489.1 CDS Cphy_1375 NC_010001.1 1715739 1716422 D TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ckl:CKL_0727 CbiL; precorrin-2 C20-methyltransferase 1715739..1716422 Clostridium phytofermentans ISDg 5742325 YP_001558490.1 CDS Cphy_1376 NC_010001.1 1716424 1717182 D KEGG: lmf:LMOf2365_1206 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C11-methyltransferase 1716424..1717182 Clostridium phytofermentans ISDg 5742326 YP_001558491.1 CDS Cphy_1377 NC_010001.1 1717296 1718351 D PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: tde:TDE0615 cobalamin biosynthesis protein CbiG; cobalamin (vitamin B12) biosynthesis protein CbiG 1717296..1718351 Clostridium phytofermentans ISDg 5742327 YP_001558492.1 CDS Cphy_1378 NC_010001.1 1718348 1719076 D TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mta:Moth_1094 precorrin-3B C17-methyltransferase; precorrin-3B C17-methyltransferase 1718348..1719076 Clostridium phytofermentans ISDg 5742328 YP_001558493.1 CDS Cphy_1379 NC_010001.1 1719119 1721086 D TIGRFAM: precorrin-6x reductase; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Precorrin-6x reductase CbiJ/CobK; KEGG: ctc:CTC00734 precorrin-6B methylase/decarboxylase cbiT/cbiE; precorrin-6x reductase 1719119..1721086 Clostridium phytofermentans ISDg 5742329 YP_001558494.1 CDS Cphy_1380 NC_010001.1 1721101 1722459 D TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: tte:TTE0375 Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 1721101..1722459 Clostridium phytofermentans ISDg 5742330 YP_001558495.1 CDS Cphy_1381 NC_010001.1 1722496 1723020 D PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: cbe:Cbei_1263 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 1722496..1723020 Clostridium phytofermentans ISDg 5742331 YP_001558496.1 CDS Cphy_1382 NC_010001.1 1723033 1723677 D PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: amt:Amet_0069 precorrin-8X methylmutase CbiC/CobH; precorrin-8X methylmutase CbiC/CobH 1723033..1723677 Clostridium phytofermentans ISDg 5742332 YP_001558497.1 CDS Cphy_1383 NC_010001.1 1724327 1725226 D TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cbe:Cbei_3712 cobalt ABC transporter, inner membrane subunit CbiQ; cobalt ABC transporter permease 1724327..1725226 Clostridium phytofermentans ISDg 5742333 YP_001558498.1 CDS Cphy_1384 NC_010001.1 1725247 1726098 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3711 ABC transporter related; ABC transporter 1725247..1726098 Clostridium phytofermentans ISDg 5742334 YP_001558499.1 CDS Cphy_1385 NC_010001.1 1726169 1726921 D TIGRFAM: cobalamin biosynthesis protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: cbe:Cbei_3710 cobalamin biosynthesis protein CbiM; cobalamin biosynthesis protein CbiM 1726169..1726921 Clostridium phytofermentans ISDg 5742335 YP_001558500.1 CDS Cphy_1386 NC_010001.1 1726921 1727253 D PFAM: Cobalt transport protein CbiN; KEGG: cbe:Cbei_3709 cobalt/cobalamin transport protein CbiN; cobalt transport protein CbiN 1726921..1727253 Clostridium phytofermentans ISDg 5742336 YP_001558501.1 CDS Cphy_1387 NC_010001.1 1727421 1728206 D PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; anaerobic cobalt chelatase; KEGG: cno:NT01CX_0573 anaerobic cobalt chelatase; anaerobic cobalt chelatase 1727421..1728206 Clostridium phytofermentans ISDg 5742337 YP_001558502.1 CDS Cphy_1388 NC_010001.1 1728440 1729198 D KEGG: ddi:DDBDRAFT_0218024 hypothetical protein; hypothetical protein 1728440..1729198 Clostridium phytofermentans ISDg 5742338 YP_001558503.1 CDS Cphy_1389 NC_010001.1 1729257 1729592 D hypothetical protein 1729257..1729592 Clostridium phytofermentans ISDg 5742339 YP_001558504.1 CDS Cphy_1390 NC_010001.1 1729845 1730771 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lin:lin0218 similar to sugar ABC transporters, permeases; binding-protein-dependent transport systems inner membrane component 1729845..1730771 Clostridium phytofermentans ISDg 5742340 YP_001558505.1 CDS Cphy_1391 NC_010001.1 1730803 1731633 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00317 probable sugar ABC transporter, permease; binding-protein-dependent transport systems inner membrane component 1730803..1731633 Clostridium phytofermentans ISDg 5742341 YP_001558506.1 CDS Cphy_1392 NC_010001.1 1731696 1733045 D PFAM: extracellular solute-binding protein family 1; KEGG: cpe:CPE0371 conserved hypothetical protein; extracellular solute-binding protein 1731696..1733045 Clostridium phytofermentans ISDg 5742342 YP_001558507.1 CDS Cphy_1393 NC_010001.1 1733168 1734928 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cbe:Cbei_1382 histidine kinase internal region; histidine kinase internal region 1733168..1734928 Clostridium phytofermentans ISDg 5742343 YP_001558508.1 CDS Cphy_1394 NC_010001.1 1734977 1736548 D PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cpf:CPF_2344 DNA-binding response regulator, AraC family; two component AraC family transcriptional regulator 1734977..1736548 Clostridium phytofermentans ISDg 5742344 YP_001558509.1 CDS Cphy_1395 NC_010001.1 1736693 1738969 D KEGG: afm:AFUA_3G12590 conserved hypothetical protein; hypothetical protein 1736693..1738969 Clostridium phytofermentans ISDg 5742345 YP_001558510.1 CDS Cphy_1396 NC_010001.1 1739448 1740800 D PFAM: sodium:dicarboxylate symporter; KEGG: cpr:CPR_1019 sodium:dicarboxylate symporter family protein; sodium:dicarboxylate symporter 1739448..1740800 Clostridium phytofermentans ISDg 5742346 YP_001558511.1 CDS Cphy_1397 NC_010001.1 1740898 1741143 R hypothetical protein complement(1740898..1741143) Clostridium phytofermentans ISDg 5742347 YP_001558512.1 CDS Cphy_1398 NC_010001.1 1741796 1742128 D hypothetical protein 1741796..1742128 Clostridium phytofermentans ISDg 5742348 YP_001558513.1 CDS Cphy_1399 NC_010001.1 1742125 1743120 D KEGG: csc:Csac_2163 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein; dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein 1742125..1743120 Clostridium phytofermentans ISDg 5742349 YP_001558514.1 CDS Cphy_1400 NC_010001.1 1743270 1743755 D PFAM: GCN5-related N-acetyltransferase; KEGG: cbf:CLI_2651 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1743270..1743755 Clostridium phytofermentans ISDg 5742350 YP_001558515.1 CDS Cphy_1401 NC_010001.1 1744116 1744316 D hypothetical protein 1744116..1744316 Clostridium phytofermentans ISDg 5742351 YP_001558516.1 CDS Cphy_1402 NC_010001.1 1744371 1744859 D PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bce:BC2431 PhnB protein; 3-demethylubiquinone-9 3-methyltransferase 1744371..1744859 Clostridium phytofermentans ISDg 5742352 YP_001558517.1 CDS Cphy_1403 NC_010001.1 1745089 1746060 D PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: oih:OB0252 oxidoreductase; glycosyl hydrolase BNR repeat-containing glycosyl hydrolase 1745089..1746060 Clostridium phytofermentans ISDg 5742353 YP_001558518.1 CDS Cphy_1404 NC_010001.1 1746592 1747128 R KEGG: cbf:CLI_3543 flavoredoxin; flavoredoxin complement(1746592..1747128) Clostridium phytofermentans ISDg 5742354 YP_001558519.1 CDS Cphy_1405 NC_010001.1 1747233 1747550 D PFAM: helix-turn-helix HxlR type; KEGG: cbf:CLI_3542 transcriptional regulator; HxlR family transcriptional regulator 1747233..1747550 Clostridium phytofermentans ISDg 5742355 YP_001558520.1 CDS Cphy_1406 NC_010001.1 1747940 1748317 D KEGG: cpr:CPR_0884 hypothetical protein; hypothetical protein 1747940..1748317 Clostridium phytofermentans ISDg 5742356 YP_001558521.1 CDS Cphy_1407 NC_010001.1 1748378 1748872 D hypothetical protein 1748378..1748872 Clostridium phytofermentans ISDg 5742357 YP_001558522.1 CDS Cphy_1408 NC_010001.1 1748850 1749191 D KEGG: sep:SE0117 ABC transporter (ATP-binding protein); ABC transporter ATP-binding protein 1748850..1749191 Clostridium phytofermentans ISDg 5742358 YP_001558523.1 CDS Cphy_1409 NC_010001.1 1749318 1750049 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dsy:DSY4360 hypothetical protein; methyltransferase type 11 1749318..1750049 Clostridium phytofermentans ISDg 5742359 YP_001558524.1 CDS Cphy_1410 NC_010001.1 1750400 1751233 D PFAM: regulatory protein MerR; KEGG: cbf:CLI_2168 transcriptional regulator, MerR family; MerR family transcriptional regulator 1750400..1751233 Clostridium phytofermentans ISDg 5742360 YP_001558525.1 CDS Cphy_1411 NC_010001.1 1751684 1751974 D PFAM: microcompartments protein; KEGG: cbf:CLI_2149 bacterial microcompartments family protein; microcompartments protein 1751684..1751974 Clostridium phytofermentans ISDg 5742361 YP_001558526.1 CDS Cphy_1412 NC_010001.1 1751974 1752990 D KEGG: amt:Amet_3840 membrane spanning protein; membrane spanning protein 1751974..1752990 Clostridium phytofermentans ISDg 5742362 YP_001558527.1 CDS Cphy_1413 NC_010001.1 1752995 1753282 D KEGG: dde:Dde_3289 hypothetical protein; hypothetical protein 1752995..1753282 Clostridium phytofermentans ISDg 5742363 YP_001558528.1 CDS Cphy_1414 NC_010001.1 1753303 1753599 D PFAM: microcompartments protein; KEGG: cbf:CLI_2164 bacterial microcompartments family protein; microcompartments protein 1753303..1753599 Clostridium phytofermentans ISDg 5742364 YP_001558529.1 CDS Cphy_1415 NC_010001.1 1753617 1753925 D PFAM: microcompartments protein; KEGG: amt:Amet_3837 microcompartments protein; microcompartments protein 1753617..1753925 Clostridium phytofermentans ISDg 5742365 YP_001558530.1 CDS Cphy_1416 NC_010001.1 1753956 1755491 D KEGG: cbh:CLC_2061 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 1753956..1755491 Clostridium phytofermentans ISDg 5742366 YP_001558531.1 CDS Cphy_1417 NC_010001.1 1755519 1758065 D PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; KEGG: cbf:CLI_2161 formate acetyltransferase; formate C-acetyltransferase 1755519..1758065 Clostridium phytofermentans ISDg 5742367 YP_001558532.1 CDS Cphy_1418 NC_010001.1 1758088 1759035 D KEGG: cbh:CLC_2059 glycyl-radical enzyme activating family protein; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Radical SAM domain protein; glycyl-radical activating family protein 1758088..1759035 Clostridium phytofermentans ISDg 5742368 YP_001558533.1 CDS Cphy_1419 NC_010001.1 1759053 1759394 D PFAM: microcompartments protein; KEGG: ctc:CTC01447 ethanolamine utilization protein eutS; microcompartments protein 1759053..1759394 Clostridium phytofermentans ISDg 5742369 YP_001558534.1 CDS Cphy_1420 NC_010001.1 1759391 1759822 D KEGG: cbh:CLC_2057 GTP-binding protein, EutP/PduV family; EutP/PduV family GTP-binding protein 1759391..1759822 Clostridium phytofermentans ISDg 5742370 YP_001558535.1 CDS Cphy_1421 NC_010001.1 1759845 1760981 D PFAM: iron-containing alcohol dehydrogenase; KEGG: ctc:CTC02182 alcetaldehyde dehydrogenase or NADPH-dependent butanol dehydrogenase; iron-containing alcohol dehydrogenase 1759845..1760981 Clostridium phytofermentans ISDg 5742371 YP_001558536.1 CDS Cphy_1422 NC_010001.1 1760981 1761616 D KEGG: cbh:CLC_2056 hypothetical protein; hypothetical protein 1760981..1761616 Clostridium phytofermentans ISDg 5742372 YP_001558537.1 CDS Cphy_1423 NC_010001.1 1761598 1762443 D TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: cbh:CLC_2055 ethanolamine utilization protein EutJ family protein; ethanolamine utilization protein EutJ family protein 1761598..1762443 Clostridium phytofermentans ISDg 5742373 YP_001558538.1 CDS Cphy_1424 NC_010001.1 1762457 1762762 D PFAM: microcompartments protein; KEGG: drm:Dred_3272 microcompartments protein; microcompartments protein 1762457..1762762 Clostridium phytofermentans ISDg 5742374 YP_001558539.1 CDS Cphy_1425 NC_010001.1 1762756 1763019 D PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cbh:CLC_2053 polyhedral organelle formation protein; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 1762756..1763019 Clostridium phytofermentans ISDg 5742375 YP_001558540.1 CDS Cphy_1426 NC_010001.1 1763035 1763664 D PFAM: protein of unknown function DUF861 cupin_3; Ethanolamine utilisation EutQ family protein; Cupin 2 conserved barrel domain protein; KEGG: cbf:CLI_2153 ethanolamine utilization protein EutQ-like protein; ethanolamine utilisation EutQ family protein 1763035..1763664 Clostridium phytofermentans ISDg 5742376 YP_001558541.1 CDS Cphy_1427 NC_010001.1 1763676 1764362 D PFAM: microcompartments protein; KEGG: cbh:CLC_2051 bacterial microcompartments family protein; microcompartments protein 1763676..1764362 Clostridium phytofermentans ISDg 5742377 YP_001558542.1 CDS Cphy_1428 NC_010001.1 1764393 1765940 D TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: cbh:CLC_2050 acetaldehyde dehydrogenase (acetylating); acetaldehyde dehydrogenase 1764393..1765940 Clostridium phytofermentans ISDg 5742378 YP_001558543.1 CDS Cphy_1429 NC_010001.1 1765969 1766604 D PFAM: Propanediol utilization protein; KEGG: cbf:CLI_2150 propanediol utilization protein PduL-like protein; propanediol utilization protein 1765969..1766604 Clostridium phytofermentans ISDg 5742379 YP_001558544.1 CDS Cphy_1430 NC_010001.1 1766648 1766932 D PFAM: microcompartments protein; KEGG: cbf:CLI_2149 bacterial microcompartments family protein; microcompartments protein 1766648..1766932 Clostridium phytofermentans ISDg 5742380 YP_001558545.1 CDS Cphy_1431 NC_010001.1 1767122 1767364 R hypothetical protein complement(1767122..1767364) Clostridium phytofermentans ISDg 5742381 YP_001558546.1 CDS Cphy_1432 NC_010001.1 1767590 1768153 D PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ckl:CKL_0584 hypothetical protein; isoprenylcysteine carboxyl methyltransferase 1767590..1768153 Clostridium phytofermentans ISDg 5742382 YP_001558547.1 CDS Cphy_1433 NC_010001.1 1768578 1769135 D TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: bce:BC2182 histidinol-phosphatase; HAD superfamily hydrolase 1768578..1769135 Clostridium phytofermentans ISDg 5742383 YP_001558548.1 CDS Cphy_1434 NC_010001.1 1769381 1769956 D PFAM: protein of unknown function DUF1349; KEGG: sma:SAV6390 hypothetical protein; hypothetical protein 1769381..1769956 Clostridium phytofermentans ISDg 5742384 YP_001558549.1 CDS Cphy_1435 NC_010001.1 1770444 1771535 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cbe:Cbei_3373 peptidoglycan-binding domain 1 protein; peptidoglycan binding domain-containing protein 1770444..1771535 Clostridium phytofermentans ISDg 5742385 YP_001558550.1 CDS Cphy_1436 NC_010001.1 1771908 1772750 R hypothetical protein complement(1771908..1772750) Clostridium phytofermentans ISDg 5742386 YP_001558551.1 CDS Cphy_1437 NC_010001.1 1775076 1775894 D hypothetical protein 1775076..1775894 Clostridium phytofermentans ISDg 5742387 YP_001558552.1 CDS Cphy_1438 NC_010001.1 1776094 1777269 R PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(1776094..1777269) Clostridium phytofermentans ISDg 5742388 YP_001558553.1 CDS Cphy_1439 NC_010001.1 1777512 1779119 R PFAM: transposase IS4 family protein; KEGG: cpr:CPR_0485 ISCpe5, transposase; transposase IS4 family protein complement(1777512..1779119) Clostridium phytofermentans ISDg 5742389 YP_001558554.1 CDS Cphy_1440 NC_010001.1 1779244 1780071 R PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: dsy:DSY4643 hypothetical protein; peptidoglycan binding domain-containing protein complement(1779244..1780071) Clostridium phytofermentans ISDg 5742390 YP_001558555.1 CDS Cphy_1441 NC_010001.1 1780507 1780962 D PFAM: protein of unknown function DUF1349; KEGG: sco:SCO1870 hypothetical protein; hypothetical protein 1780507..1780962 Clostridium phytofermentans ISDg 5742391 YP_001558556.1 CDS Cphy_1443 NC_010001.1 1781737 1782627 D KEGG: bca:BCE_2511 ABC transporter, permease; ABC transporter permease 1781737..1782627 Clostridium phytofermentans ISDg 5742393 YP_001558557.1 CDS Cphy_1444 NC_010001.1 1782627 1784963 D PFAM: protein of unknown function DUF214; KEGG: bcz:BCZK2228 ABC transporter, permease; hypothetical protein 1782627..1784963 Clostridium phytofermentans ISDg 5742394 YP_001558558.1 CDS Cphy_1445 NC_010001.1 1784975 1785742 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: btl:BALH_2221 ABC transporter, ATP-binding protein; ABC transporter 1784975..1785742 Clostridium phytofermentans ISDg 5742395 YP_001558559.1 CDS Cphy_1446 NC_010001.1 1785864 1787213 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: cbf:CLI_2079 transcriptional regulator, GntR family/aminotransferase, classes I and II; transcriptional regulator complement(1785864..1787213) Clostridium phytofermentans ISDg 5742396 YP_001558560.1 CDS Cphy_1447 NC_010001.1 1787325 1788239 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: cbh:CLC_1960 hypothetical protein; hypothetical protein 1787325..1788239 Clostridium phytofermentans ISDg 5742397 YP_001558561.1 CDS Cphy_1448 NC_010001.1 1788560 1789609 D TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: llm:llmg_0312 phosphonate ABC transporter, phosphonate-binding protein PhnD; phosphonate ABC transporter, periplasmic phosphonate-binding protein 1788560..1789609 Clostridium phytofermentans ISDg 5742398 YP_001558562.1 CDS Cphy_1449 NC_010001.1 1789748 1790512 D KEGG: lla:L97415 phosphonate ABC transporter ATP-binding protein; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate ABC transporter ATP-binding protein 1789748..1790512 Clostridium phytofermentans ISDg 5742399 YP_001558563.1 CDS Cphy_1450 NC_010001.1 1790509 1791330 D TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_0314 phosphonate transport system permease PhnB; phosphonate ABC transporter, inner membrane subunit 1790509..1791330 Clostridium phytofermentans ISDg 5742400 YP_001558564.1 CDS Cphy_1451 NC_010001.1 1791345 1792154 D TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_0315 phosphonate ABC transporter permease; phosphonate ABC transporter, inner membrane subunit 1791345..1792154 Clostridium phytofermentans ISDg 5742401 YP_001558565.1 CDS Cphy_1452 NC_010001.1 1792326 1793861 D PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: bcy:Bcer98_2341 5'-nucleotidase domain protein; 5'-nucleotidase 1792326..1793861 Clostridium phytofermentans ISDg 5742402 YP_001558566.1 CDS Cphy_1453 NC_010001.1 1793961 1794647 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: tte:TTE0993 Glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 1793961..1794647 Clostridium phytofermentans ISDg 5742403 YP_001558567.1 CDS Cphy_1454 NC_010001.1 1794648 1795652 D PFAM: regulatory protein LacI; KEGG: cpf:CPF_1547 transcriptional regulator, LacI family; LacI family transcriptional regulator 1794648..1795652 Clostridium phytofermentans ISDg 5742404 YP_001558568.1 CDS Cphy_1455 NC_010001.1 1795903 1797531 D KEGG: dsy:DSY1960 hypothetical protein; hypothetical protein 1795903..1797531 Clostridium phytofermentans ISDg 5742405 YP_001558569.1 CDS Cphy_1456 NC_010001.1 1797744 1798364 R KEGG: mbb:BCG_2012 hypothetical protein; hypothetical protein complement(1797744..1798364) Clostridium phytofermentans ISDg 5742406 YP_001558570.1 CDS Cphy_1457 NC_010001.1 1798453 1799430 R PFAM: beta-lactamase; KEGG: ckl:CKL_0345 predicted peptidoglycan biosynthesis protein; beta-lactamase complement(1798453..1799430) Clostridium phytofermentans ISDg 5742407 YP_001558571.1 CDS Cphy_1458 NC_010001.1 1799557 1800042 R PFAM: regulatory protein MerR; KEGG: cpr:CPR_0445 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(1799557..1800042) Clostridium phytofermentans ISDg 5742408 YP_001558572.1 CDS Cphy_1459 NC_010001.1 1800584 1801462 R KEGG: amt:Amet_2318 L-serine dehydratase, iron-sulfur-dependent, alpha subunit; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: serine dehydratase alpha chain; L-serine dehydratase, iron-sulfur-dependent subunit alpha complement(1800584..1801462) Clostridium phytofermentans ISDg 5742409 YP_001558573.1 CDS Cphy_1460 NC_010001.1 1801472 1802140 R TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: amino acid-binding ACT domain protein; serine dehydratase beta chain; KEGG: tte:TTE1008 L-serine deaminase; L-serine dehydratase, iron-sulfur-dependent subunit beta complement(1801472..1802140) Clostridium phytofermentans ISDg 5742410 YP_001558574.1 CDS Cphy_1461 NC_010001.1 1802168 1803382 R PFAM: sodium:dicarboxylate symporter; KEGG: cdf:CD2693 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(1802168..1803382) Clostridium phytofermentans ISDg 5742411 YP_001558575.1 CDS Cphy_1462 NC_010001.1 1804148 1804426 D KEGG: cbe:Cbei_0358 hypothetical protein; hypothetical protein 1804148..1804426 Clostridium phytofermentans ISDg 5742412 YP_001558576.1 CDS Cphy_1463 NC_010001.1 1804648 1805961 D PFAM: GTPase EngC; KEGG: cdf:CD3368A hypothetical protein; GTPase EngC 1804648..1805961 Clostridium phytofermentans ISDg 5742413 YP_001558577.1 CDS Cphy_1464 NC_010001.1 1806408 1806950 D PFAM: carbonic anhydrase; KEGG: bvu:BVU_0341 hypothetical protein; carbonic anhydrase 1806408..1806950 Clostridium phytofermentans ISDg 5742414 YP_001558578.1 CDS Cphy_1465 NC_010001.1 1807159 1808109 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ckl:CKL_0436 SerA; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 1807159..1808109 Clostridium phytofermentans ISDg 5742415 YP_001558579.1 CDS Cphy_1466 NC_010001.1 1808433 1809905 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cbe:Cbei_1804 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1808433..1809905 Clostridium phytofermentans ISDg 5742416 YP_001558580.1 CDS Cphy_1467 NC_010001.1 1809907 1810596 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: chy:CHY_0092 DNA-binding response regulator; two component transcriptional regulator 1809907..1810596 Clostridium phytofermentans ISDg 5742417 YP_001558581.1 CDS Cphy_1468 NC_010001.1 1810822 1811781 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afu:AF1136 ABC-2 type transport system ATP-binding protein; ABC transporter 1810822..1811781 Clostridium phytofermentans ISDg 5742418 YP_001558582.1 CDS Cphy_1469 NC_010001.1 1811778 1812542 D PFAM: ABC-2 type transporter; KEGG: cbe:Cbei_3825 ABC transporter permease; ABC-2 type transporter 1811778..1812542 Clostridium phytofermentans ISDg 5742419 YP_001558583.1 CDS Cphy_1470 NC_010001.1 1812539 1813093 D hypothetical protein 1812539..1813093 Clostridium phytofermentans ISDg 5742420 YP_001558584.1 CDS Cphy_1471 NC_010001.1 1813126 1814313 D PFAM: protein of unknown function DUF347; KEGG: rha:RHA1_ro08567 hypothetical protein; hypothetical protein 1813126..1814313 Clostridium phytofermentans ISDg 5742421 YP_001558585.1 CDS Cphy_1472 NC_010001.1 1814482 1815366 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_3990 transcription activator, effector binding; AraC family transcriptional regulator complement(1814482..1815366) Clostridium phytofermentans ISDg 5742422 YP_001558586.1 CDS Cphy_1473 NC_010001.1 1815592 1816737 D PFAM: esterase; KEGG: sru:SRU_2005 esterase superfamily; esterase 1815592..1816737 Clostridium phytofermentans ISDg 5742423 YP_001558587.1 CDS Cphy_1474 NC_010001.1 1817390 1819093 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_3119 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1817390..1819093 Clostridium phytofermentans ISDg 5742424 YP_001558588.1 CDS Cphy_1475 NC_010001.1 1819291 1820217 R PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: cbf:CLI_1602 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein complement(1819291..1820217) Clostridium phytofermentans ISDg 5742425 YP_001558589.1 CDS Cphy_1476 NC_010001.1 1820233 1820706 R TIGRFAM: C_GCAxxG_C_C family protein; KEGG: cdf:CD3018 hypothetical protein; C_GCAxxG_C_C family protein complement(1820233..1820706) Clostridium phytofermentans ISDg 5742426 YP_001558590.1 CDS Cphy_1477 NC_010001.1 1821004 1821903 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cdf:CD1079 LysR-family transcriptional regulator; LysR family transcriptional regulator 1821004..1821903 Clostridium phytofermentans ISDg 5742427 YP_001558591.1 CDS Cphy_1478 NC_010001.1 1822057 1823082 D PFAM: molybdopterin binding domain; KEGG: cbe:Cbei_1988 molybdopterin binding domain; molybdopterin binding domain-containing protein 1822057..1823082 Clostridium phytofermentans ISDg 5742428 YP_001558592.1 CDS Cphy_1479 NC_010001.1 1823097 1823588 D TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: cpf:CPF_2340 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C 1823097..1823588 Clostridium phytofermentans ISDg 5742429 YP_001558593.1 CDS Cphy_1480 NC_010001.1 1823691 1824689 D KEGG: cbe:Cbei_1989 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 1823691..1824689 Clostridium phytofermentans ISDg 5742430 YP_001558594.1 CDS Cphy_1481 NC_010001.1 1824695 1825627 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MOSC domain containing protein; KEGG: cpr:CPR_2055 molybdenum cofactor synthesis protein; molybdenum cofactor synthesis domain-containing protein 1824695..1825627 Clostridium phytofermentans ISDg 5742431 YP_001558595.1 CDS Cphy_1482 NC_010001.1 1825678 1826556 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: efa:EF1397 molybdenum ABC transporter, molybdenum-binding protein; molybdenum ABC transporter, periplasmic molybdate-binding protein 1825678..1826556 Clostridium phytofermentans ISDg 5742432 YP_001558596.1 CDS Cphy_1483 NC_010001.1 1826681 1827346 D TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msi:Msm_1610 molybdate ABC transporter, permease component, ModC; molybdate ABC transporter inner membrane subunit 1826681..1827346 Clostridium phytofermentans ISDg 5742433 YP_001558597.1 CDS Cphy_1484 NC_010001.1 1827451 1828626 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msi:Msm_1611 molybdate ABC transporter, ATPase component; ABC transporter 1827451..1828626 Clostridium phytofermentans ISDg 5742434 YP_001558598.1 CDS Cphy_1485 NC_010001.1 1828657 1829781 D PFAM: protein of unknown function DUF182; KEGG: dsy:DSY0877 hypothetical protein; hypothetical protein 1828657..1829781 Clostridium phytofermentans ISDg 5742435 YP_001558599.1 CDS Cphy_1486 NC_010001.1 1829925 1830947 D KEGG: dsy:DSY4694 hypothetical protein; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein domain protein; selenide, water dikinase 1829925..1830947 Clostridium phytofermentans ISDg 5742436 YP_001558600.1 CDS Cphy_1487 NC_010001.1 1831098 1831769 D PFAM: SirA family protein; KEGG: cdf:CD3667 hypothetical protein; SirA family protein 1831098..1831769 Clostridium phytofermentans ISDg 5742437 YP_001558601.1 CDS Cphy_1488 NC_010001.1 1831953 1832798 D KEGG: cbh:CLC_2789 hypothetical protein; hypothetical protein 1831953..1832798 Clostridium phytofermentans ISDg 5742438 YP_001558602.1 CDS Cphy_1489 NC_010001.1 1832814 1833953 D KEGG: tte:TTE2789 selenocysteine lyase; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; glycine hydroxymethyltransferase; cysteine desulfurase 1832814..1833953 Clostridium phytofermentans ISDg 5742439 YP_001558603.1 CDS Cphy_1490 NC_010001.1 1833964 1834200 D hypothetical protein 1833964..1834200 Clostridium phytofermentans ISDg 5742440 YP_001558604.1 CDS Cphy_1491 NC_010001.1 1834253 1834996 D KEGG: tva:TVAG_164520 conserved hypothetical protein; hypothetical protein 1834253..1834996 Clostridium phytofermentans ISDg 5744313 YP_001558605.1 CDS Cphy_1492 NC_010001.1 1835240 1835905 D PFAM: YheO domain protein; KEGG: efa:EF0096 hypothetical protein; hypothetical protein 1835240..1835905 Clostridium phytofermentans ISDg 5744314 YP_001558606.1 CDS Cphy_1493 NC_010001.1 1836361 1836735 D TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: cbe:Cbei_0471 endoribonuclease L-PSP; endoribonuclease L-PSP 1836361..1836735 Clostridium phytofermentans ISDg 5744315 YP_001558607.1 CDS Cphy_1494 NC_010001.1 1837065 1838402 D in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS; chlorohydrolase/aminohydrolase 1837065..1838402 Clostridium phytofermentans ISDg 5744316 YP_001558608.1 CDS Cphy_1495 NC_010001.1 1838455 1840137 D KEGG: efa:EF2581 oxidoreductase, pyridine nucleotide-disulfide family; hypothetical protein 1838455..1840137 Clostridium phytofermentans ISDg 5744317 YP_001558609.1 CDS Cphy_1496 NC_010001.1 1840384 1841757 D catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 1840384..1841757 Clostridium phytofermentans ISDg 5744318 YP_001558610.1 CDS Cphy_1497 NC_010001.1 1841927 1844488 D TIGRFAM: selenium-dependent molybdenum hydroxylase 1; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: cbe:Cbei_1982 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; selenium-dependent molybdenum hydroxylase 1 1841927..1844488 Clostridium phytofermentans ISDg 5744319 YP_001558611.1 CDS Cphy_1498 NC_010001.1 1844555 1845838 D PFAM: Xanthine/uracil/vitamin C permease; KEGG: efa:EF2573 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 1844555..1845838 Clostridium phytofermentans ISDg 5744320 YP_001558612.1 CDS Cphy_1499 NC_010001.1 1846092 1847312 D catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 1846092..1847312 Clostridium phytofermentans ISDg 5744321 YP_001558613.1 CDS Cphy_1500 NC_010001.1 1847407 1848591 D Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; peptidase 1847407..1848591 Clostridium phytofermentans ISDg 5744322 YP_001558614.1 CDS Cphy_1501 NC_010001.1 1848945 1850408 D PFAM: D-aminoacylase domain protein; Amidohydrolase 3; KEGG: drm:Dred_0263 N-acyl-D-amino-acid deacylase; N-acyl-D-glutamate deacylase 1848945..1850408 Clostridium phytofermentans ISDg 5744323 YP_001558615.1 CDS Cphy_1502 NC_010001.1 1850685 1851185 R TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: bfr:BF3573 peptide methionine sulfoxide reductase; peptide methionine sulfoxide reductase complement(1850685..1851185) Clostridium phytofermentans ISDg 5744324 YP_001558616.1 CDS Cphy_1503 NC_010001.1 1851557 1852435 R PFAM: glucose-inhibited division protein A; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cth:Cthe_1945 thioredoxin-disulfide reductase; thioredoxin-disulfide reductase complement(1851557..1852435) Clostridium phytofermentans ISDg 5744325 YP_001558617.1 CDS Cphy_1504 NC_010001.1 1852676 1853956 D PFAM: protein of unknown function DUF1576; KEGG: amt:Amet_4320 protein of unknown function DUF1576; hypothetical protein 1852676..1853956 Clostridium phytofermentans ISDg 5744326 YP_001558618.1 CDS Cphy_1505 NC_010001.1 1853953 1854306 D KEGG: amt:Amet_4319 hypothetical protein; hypothetical protein 1853953..1854306 Clostridium phytofermentans ISDg 5744327 YP_001558619.1 CDS Cphy_1506 NC_010001.1 1854463 1855635 D PFAM: NUDIX hydrolase; KEGG: mma:MM_2810 hypothetical protein; NUDIX hydrolase 1854463..1855635 Clostridium phytofermentans ISDg 5744328 YP_001558620.1 CDS Cphy_1507 NC_010001.1 1855688 1856224 D PFAM: protein of unknown function DUF74; KEGG: ckl:CKL_2433 hypothetical protein; hypothetical protein 1855688..1856224 Clostridium phytofermentans ISDg 5744329 YP_001558621.1 CDS Cphy_1508 NC_010001.1 1856701 1857324 D KEGG: cbe:Cbei_1845 hypothetical protein; hypothetical protein 1856701..1857324 Clostridium phytofermentans ISDg 5744330 YP_001558622.1 CDS Cphy_1509 NC_010001.1 1857328 1857891 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cac:CAC0760 uncharacterized conserved protein, YTFE family, possibly metal-binding; hemerythrin HHE cation binding domain-containing protein 1857328..1857891 Clostridium phytofermentans ISDg 5744331 YP_001558623.1 CDS Cphy_1510 NC_010001.1 1858460 1860022 D PFAM: glycoside hydrolase family 10; KEGG: cth:Cthe_0912 glycoside hydrolase, family 10; endo-1,4-beta-xylanase 1858460..1860022 Clostridium phytofermentans ISDg 5744332 YP_001558624.1 CDS Cphy_1511 NC_010001.1 1860368 1860739 D KEGG: lme:LEUM_1913 hypothetical protein; hypothetical protein 1860368..1860739 Clostridium phytofermentans ISDg 5744333 YP_001558625.1 CDS Cphy_1512 NC_010001.1 1860777 1861352 D PFAM: Rhomboid family protein; KEGG: cth:Cthe_0259 rhomboid-like protein; rhomboid family protein 1860777..1861352 Clostridium phytofermentans ISDg 5744334 YP_001558626.1 CDS Cphy_1513 NC_010001.1 1861516 1862085 D PFAM: regulatory protein TetR; KEGG: cac:CAC1668 transcriptional regulator, AcrR family; TetR family transcriptional regulator 1861516..1862085 Clostridium phytofermentans ISDg 5744335 YP_001558627.1 CDS Cphy_1514 NC_010001.1 1862596 1864533 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tte:TTE2131 NADH:flavin oxidoreductase, Old Yellow enzyme family; NADH:flavin oxidoreductase 1862596..1864533 Clostridium phytofermentans ISDg 5744336 YP_001558628.1 CDS Cphy_1515 NC_010001.1 1864660 1864956 R KEGG: cbe:Cbei_4414 hypothetical protein; hypothetical protein complement(1864660..1864956) Clostridium phytofermentans ISDg 5744337 YP_001558629.1 CDS Cphy_1516 NC_010001.1 1865404 1866213 D PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: cdf:CD2101 FAD-binding subunit of oxidoreductase; molybdopterin dehydrogenase FAD-binding 1865404..1866213 Clostridium phytofermentans ISDg 5744338 YP_001558630.1 CDS Cphy_1517 NC_010001.1 1866203 1866673 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: drm:Dred_2775 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1866203..1866673 Clostridium phytofermentans ISDg 5744339 YP_001558631.1 CDS Cphy_1518 NC_010001.1 1866673 1868967 D PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: drm:Dred_2776 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 1866673..1868967 Clostridium phytofermentans ISDg 5744340 YP_001558632.1 CDS Cphy_1519 NC_010001.1 1868957 1869568 D KEGG: sso:SSO2432 hypothetical protein; hypothetical protein 1868957..1869568 Clostridium phytofermentans ISDg 5744341 YP_001558633.1 CDS Cphy_1520 NC_010001.1 1869750 1871774 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: tte:TTE0448 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1869750..1871774 Clostridium phytofermentans ISDg 5744342 YP_001558634.1 CDS nagB NC_010001.1 1871977 1872732 D catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 1871977..1872732 Clostridium phytofermentans ISDg 5744343 YP_001558635.1 CDS Cphy_1522 NC_010001.1 1872887 1873198 R KEGG: cbe:Cbei_3840 hypothetical protein; hypothetical protein complement(1872887..1873198) Clostridium phytofermentans ISDg 5744344 YP_001558636.1 CDS Cphy_1523 NC_010001.1 1873259 1874320 R KEGG: ngo:NGO0355 hypothetical protein; hypothetical protein complement(1873259..1874320) Clostridium phytofermentans ISDg 5744345 YP_001558637.1 CDS Cphy_1524 NC_010001.1 1874838 1875101 D KEGG: btl:BALH_1616 hypothetical protein; hypothetical protein 1874838..1875101 Clostridium phytofermentans ISDg 5744346 YP_001558638.1 CDS Cphy_1525 NC_010001.1 1875401 1875937 D hypothetical protein 1875401..1875937 Clostridium phytofermentans ISDg 5744347 YP_001558639.1 CDS Cphy_1526 NC_010001.1 1875994 1876290 D PFAM: GCN5-related N-acetyltransferase; KEGG: rca:Rcas_2701 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1875994..1876290 Clostridium phytofermentans ISDg 5744348 YP_001558640.1 CDS Cphy_1527 NC_010001.1 1876583 1877041 D PFAM: GCN5-related N-acetyltransferase; KEGG: llm:llmg_1669 acetyltransferase; N-acetyltransferase GCN5 1876583..1877041 Clostridium phytofermentans ISDg 5744349 YP_001558641.1 CDS Cphy_1528 NC_010001.1 1877364 1878218 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_4840 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator complement(1877364..1878218) Clostridium phytofermentans ISDg 5744350 YP_001558642.1 CDS Cphy_1529 NC_010001.1 1878477 1879796 D PFAM: extracellular solute-binding protein family 1; KEGG: cbe:Cbei_4680 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1878477..1879796 Clostridium phytofermentans ISDg 5744351 YP_001558643.1 CDS Cphy_1530 NC_010001.1 1879890 1880777 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2543 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1879890..1880777 Clostridium phytofermentans ISDg 5744352 YP_001558644.1 CDS Cphy_1531 NC_010001.1 1880788 1881615 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2542 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1880788..1881615 Clostridium phytofermentans ISDg 5744353 YP_001558645.1 CDS Cphy_1532 NC_010001.1 1881755 1882096 D PFAM: Domain of unknown function DUF1801; KEGG: rci:RCIX1712 hypothetical protein; hypothetical protein 1881755..1882096 Clostridium phytofermentans ISDg 5744354 YP_001558646.1 CDS Cphy_1533 NC_010001.1 1882261 1882824 D KEGG: cdf:CD2540 NADH oxidase; NADH oxidase 1882261..1882824 Clostridium phytofermentans ISDg 5744355 YP_001558647.1 CDS Cphy_1534 NC_010001.1 1883171 1884274 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: lca:LSEI_2779 metal-dependent hydrolase; endonuclease/exonuclease/phosphatase 1883171..1884274 Clostridium phytofermentans ISDg 5744356 YP_001558648.1 CDS Cphy_1535 NC_010001.1 1884626 1886500 D KEGG: amt:Amet_1714 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; arginyl-tRNA synthetase 1884626..1886500 Clostridium phytofermentans ISDg 5744357 YP_001558649.1 CDS Cphy_1536 NC_010001.1 1886669 1887664 D PFAM: NUDIX hydrolase; GCN5-related N-acetyltransferase; KEGG: dsy:DSY4332 hypothetical protein; NUDIX hydrolase 1886669..1887664 Clostridium phytofermentans ISDg 5744358 YP_001558650.1 CDS Cphy_1537 NC_010001.1 1887677 1888474 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ctc:CTC00693 conserved protein, endonuclease-like; xylose isomerase domain-containing protein 1887677..1888474 Clostridium phytofermentans ISDg 5744359 YP_001558651.1 CDS Cphy_1538 NC_010001.1 1888747 1889829 D TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: ckl:CKL_1774 GcvT; glycine cleavage system T protein 1888747..1889829 Clostridium phytofermentans ISDg 5744360 YP_001558652.1 CDS Cphy_1539 NC_010001.1 1889855 1890238 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 1889855..1890238 Clostridium phytofermentans ISDg 5744361 YP_001558653.1 CDS Cphy_1540 NC_010001.1 1890252 1891571 D PFAM: glycine cleavage system P-protein; KEGG: ckl:CKL_1772 GcvPA; glycine dehydrogenase 1890252..1891571 Clostridium phytofermentans ISDg 5744362 YP_001558654.1 CDS Cphy_1541 NC_010001.1 1891576 1893036 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 1891576..1893036 Clostridium phytofermentans ISDg 5744363 YP_001558655.1 CDS Cphy_1542 NC_010001.1 1893020 1894018 D TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: ckl:CKL_1770 LplA; lipoyltransferase and lipoate-protein ligase 1893020..1894018 Clostridium phytofermentans ISDg 5744364 YP_001558656.1 CDS Cphy_1543 NC_010001.1 1894237 1895649 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: ckl:CKL_1769 BfmBC; dihydrolipoamide dehydrogenase 1894237..1895649 Clostridium phytofermentans ISDg 5744365 YP_001558657.1 CDS Cphy_1544 NC_010001.1 1896045 1897952 D SMART: helicase c2; KEGG: amt:Amet_3769 helicase C2; helicase c2 1896045..1897952 Clostridium phytofermentans ISDg 5744366 YP_001558658.1 CDS Cphy_1545 NC_010001.1 1898031 1898312 D PFAM: protein of unknown function DUF503; KEGG: cbf:CLI_2969 hypothetical protein; hypothetical protein 1898031..1898312 Clostridium phytofermentans ISDg 5744367 YP_001558659.1 CDS Cphy_1546 NC_010001.1 1898594 1899421 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_1324 transcriptional regulator; AraC family transcriptional regulator complement(1898594..1899421) Clostridium phytofermentans ISDg 5744368 YP_001558660.1 CDS Cphy_1547 NC_010001.1 1899632 1901068 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_1357 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1899632..1901068 Clostridium phytofermentans ISDg 5744369 YP_001558661.1 CDS Cphy_1548 NC_010001.1 1901146 1902138 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2553 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1901146..1902138 Clostridium phytofermentans ISDg 5744370 YP_001558662.1 CDS Cphy_1549 NC_010001.1 1902250 1904037 D KEGG: efa:EF1234 ABC transporter, substrate-binding protein; hypothetical protein 1902250..1904037 Clostridium phytofermentans ISDg 5744371 YP_001558663.1 CDS Cphy_1550 NC_010001.1 1904098 1904709 D KEGG: llm:llmg_1837 hypothetical protein; hypothetical protein 1904098..1904709 Clostridium phytofermentans ISDg 5744372 YP_001558664.1 CDS Cphy_1551 NC_010001.1 1904727 1905401 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: det:DET0533 HAD-superfamily hydrolase, subfamily IA; HAD family hydrolase 1904727..1905401 Clostridium phytofermentans ISDg 5744373 YP_001558665.1 CDS Cphy_1552 NC_010001.1 1905605 1905943 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: ckl:CKL_0346 hypothetical protein; cupin complement(1905605..1905943) Clostridium phytofermentans ISDg 5744374 YP_001558666.1 CDS Cphy_1553 NC_010001.1 1905958 1906143 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dsy:DSY1868 hypothetical protein; 4Fe-4S ferredoxin complement(1905958..1906143) Clostridium phytofermentans ISDg 5744375 YP_001558667.1 CDS Cphy_1554 NC_010001.1 1906256 1907188 D PFAM: helix-turn-helix domain protein; KEGG: bcy:Bcer98_3869 helix-turn-helix domain protein; XRE family transcriptional regulator 1906256..1907188 Clostridium phytofermentans ISDg 5744376 YP_001558668.1 CDS Cphy_1555 NC_010001.1 1907640 1913306 D TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: surface protein from Gram-positive cocci anchor region; Cna B domain protein; Collagen binding domain protein; KEGG: bha:BH2014 hypothetical protein; cell wall anchor domain-containing protein 1907640..1913306 Clostridium phytofermentans ISDg 5744377 YP_001558669.1 CDS Cphy_1556 NC_010001.1 1913686 1914504 D PFAM: transglutaminase domain protein; KEGG: cno:NT01CX_0209 transglutaminase-like enzyme, cysteine protease; transglutaminase domain-containing protein 1913686..1914504 Clostridium phytofermentans ISDg 5744378 YP_001558670.1 CDS Cphy_1557 NC_010001.1 1914670 1915326 R KEGG: dsy:DSY0637 hypothetical protein; hypothetical protein complement(1914670..1915326) Clostridium phytofermentans ISDg 5744379 YP_001558671.1 CDS Cphy_1558 NC_010001.1 1915316 1916203 R PFAM: DegV family protein; KEGG: dsy:DSY0636 hypothetical protein; DegV family protein complement(1915316..1916203) Clostridium phytofermentans ISDg 5744380 YP_001558672.1 CDS Cphy_1559 NC_010001.1 1916737 1917444 D hypothetical protein 1916737..1917444 Clostridium phytofermentans ISDg 5744381 YP_001558673.1 CDS Cphy_1560 NC_010001.1 1917456 1918169 D KEGG: spj:MGAS2096_Spy1119 hypothetical protein; hypothetical protein 1917456..1918169 Clostridium phytofermentans ISDg 5744382 YP_001558674.1 CDS Cphy_1561 NC_010001.1 1918294 1918998 R PFAM: regulatory protein GntR HTH; KEGG: chy:CHY_0434 transcriptional regulator, GntR family; regulatory protein GntR HTH complement(1918294..1918998) Clostridium phytofermentans ISDg 5744383 YP_001558675.1 CDS Cphy_1562 NC_010001.1 1919275 1920270 D KEGG: cbf:CLI_0519 hypothetical protein; hypothetical protein 1919275..1920270 Clostridium phytofermentans ISDg 5744384 YP_001558676.1 CDS Cphy_1563 NC_010001.1 1920371 1921045 D TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: cbh:CLC_0506 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 1920371..1921045 Clostridium phytofermentans ISDg 5744385 YP_001558677.1 CDS Cphy_1564 NC_010001.1 1921125 1923800 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbo:CBO0432 pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin 1921125..1923800 Clostridium phytofermentans ISDg 5744386 YP_001558678.1 CDS Cphy_1565 NC_010001.1 1923808 1924149 D PFAM: hydrogenase expression/synthesis HypA; KEGG: cbf:CLI_0518 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA 1923808..1924149 Clostridium phytofermentans ISDg 5744387 YP_001558679.1 CDS Cphy_1566 NC_010001.1 1924529 1926922 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cdf:CD1659 probable cation-transporting ATPase; P-type HAD superfamily ATPase complement(1924529..1926922) Clostridium phytofermentans ISDg 5744388 YP_001558680.1 CDS Cphy_1567 NC_010001.1 1927344 1928687 R KEGG: cno:NT01CX_2046 hypothetical protein; hypothetical protein complement(1927344..1928687) Clostridium phytofermentans ISDg 5744389 YP_001558681.1 CDS Cphy_1568 NC_010001.1 1928946 1929713 D PFAM: protein of unknown function DUF328; KEGG: ppe:PEPE_1842 hypothetical protein; hypothetical protein 1928946..1929713 Clostridium phytofermentans ISDg 5744390 YP_001558682.1 CDS Cphy_1569 NC_010001.1 1929694 1930146 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cdf:CD1822 thiol peroxidase (bacterioferritin comigratory protein); alkyl hydroperoxide reductase 1929694..1930146 Clostridium phytofermentans ISDg 5744391 YP_001558683.1 CDS Cphy_1570 NC_010001.1 1930359 1930871 R PFAM: Ferritin Dps family protein; KEGG: dsy:DSY1172 hypothetical protein; ferritin Dps family protein complement(1930359..1930871) Clostridium phytofermentans ISDg 5744392 YP_001558684.1 CDS Cphy_1571 NC_010001.1 1931101 1932780 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cac:CAC3245 subtilisin like protease (two fused domains); peptidase S8/S53 subtilisin kexin sedolisin 1931101..1932780 Clostridium phytofermentans ISDg 5744393 YP_001558685.1 CDS Cphy_1572 NC_010001.1 1932859 1934538 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpf:CPF_2368 subtilase family protein; peptidase S8/S53 subtilisin kexin sedolisin 1932859..1934538 Clostridium phytofermentans ISDg 5744394 YP_001558686.1 CDS Cphy_1573 NC_010001.1 1934628 1936307 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: ctc:CTC02345 serine-type protease; peptidase S8/S53 subtilisin kexin sedolisin 1934628..1936307 Clostridium phytofermentans ISDg 5744395 YP_001558687.1 CDS Cphy_1574 NC_010001.1 1936556 1938238 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: ctc:CTC02345 serine-type protease; peptidase S8/S53 subtilisin kexin sedolisin 1936556..1938238 Clostridium phytofermentans ISDg 5744396 YP_001558688.1 CDS Cphy_1575 NC_010001.1 1938361 1940046 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpe:CPE2561 probable Ser-type protease; peptidase S8/S53 subtilisin kexin sedolisin 1938361..1940046 Clostridium phytofermentans ISDg 5744397 YP_001558689.1 CDS Cphy_1576 NC_010001.1 1940148 1941827 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpr:CPR_2070 subtilase family protein; peptidase S8/S53 subtilisin kexin sedolisin 1940148..1941827 Clostridium phytofermentans ISDg 5744398 YP_001558690.1 CDS Cphy_1577 NC_010001.1 1941975 1942256 D hypothetical protein 1941975..1942256 Clostridium phytofermentans ISDg 5744399 YP_001558691.1 CDS Cphy_1578 NC_010001.1 1942457 1943335 D PFAM: ROK family protein; KEGG: gka:GK3204 fructokinase; ROK family protein 1942457..1943335 Clostridium phytofermentans ISDg 5744400 YP_001558692.1 CDS Cphy_1579 NC_010001.1 1943545 1944048 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cdf:CD1558 RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 factor 1943545..1944048 Clostridium phytofermentans ISDg 5744401 YP_001558693.1 CDS Cphy_1580 NC_010001.1 1944041 1944952 D KEGG: lbu:LBUL_1746 hypothetical protein; hypothetical protein 1944041..1944952 Clostridium phytofermentans ISDg 5744402 YP_001558694.1 CDS Cphy_1581 NC_010001.1 1945393 1946445 D KEGG: tte:TTE0286 periplasmic sugar-binding proteins; ABC-type sugar transport system periplasmic component-like protein 1945393..1946445 Clostridium phytofermentans ISDg 5744403 YP_001558695.1 CDS Cphy_1582 NC_010001.1 1946429 1947925 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: tte:TTE0287 predicted ATPase; signal transduction histidine kinase LytS 1946429..1947925 Clostridium phytofermentans ISDg 5744404 YP_001558696.1 CDS Cphy_1583 NC_010001.1 1947918 1949519 D PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: tte:TTE0288 CheY-like receiver domains; two component AraC family transcriptional regulator 1947918..1949519 Clostridium phytofermentans ISDg 5744405 YP_001558697.1 CDS Cphy_1584 NC_010001.1 1949516 1950559 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0289 Periplasmic sugar-binding proteins; periplasmic binding protein/LacI transcriptional regulator 1949516..1950559 Clostridium phytofermentans ISDg 5744406 YP_001558698.1 CDS Cphy_1585 NC_010001.1 1950754 1951821 D KEGG: amt:Amet_3799 solute-binding component of ABC transporter; solute-binding component of ABC transporter 1950754..1951821 Clostridium phytofermentans ISDg 5744407 YP_001558699.1 CDS Cphy_1586 NC_010001.1 1951989 1953530 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gtn:GTNG_1800 L-arabinose transport, ATP binding protein; ABC transporter 1951989..1953530 Clostridium phytofermentans ISDg 5744408 YP_001558700.1 CDS Cphy_1587 NC_010001.1 1953534 1954712 D PFAM: inner-membrane translocator; KEGG: amt:Amet_3797 monosaccharide-transporting ATPase; monosaccharide-transporting ATPase 1953534..1954712 Clostridium phytofermentans ISDg 5744409 YP_001558701.1 CDS Cphy_1588 NC_010001.1 1954999 1956150 D PFAM: SEC-C motif domain protein; KEGG: oih:OB1032 hypothetical protein; SecC motif-containing protein 1954999..1956150 Clostridium phytofermentans ISDg 5744410 YP_001558702.1 CDS Cphy_1589 NC_010001.1 1956776 1957882 D KEGG: bce:BC0396 hypothetical protein; hypothetical protein 1956776..1957882 Clostridium phytofermentans ISDg 5744411 YP_001558703.1 CDS Cphy_1590 NC_010001.1 1958047 1959417 D KEGG: bcy:Bcer98_0514 helix-turn-helix domain protein; XRE family transcriptional regulator 1958047..1959417 Clostridium phytofermentans ISDg 5744412 YP_001558704.1 CDS Cphy_1591 NC_010001.1 1959583 1960827 D PFAM: major facilitator superfamily MFS_1; KEGG: tme:Tmel_0369 major facilitator superfamily MFS_1; major facilitator transporter 1959583..1960827 Clostridium phytofermentans ISDg 5744413 YP_001558705.1 CDS Cphy_1592 NC_010001.1 1961088 1962812 D in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen 1961088..1962812 Clostridium phytofermentans ISDg 5744414 YP_001558706.1 CDS Cphy_1593 NC_010001.1 1963131 1964513 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cpf:CPF_1409 MATE efflux family protein; MATE efflux family protein complement(1963131..1964513) Clostridium phytofermentans ISDg 5744415 YP_001558707.1 CDS Cphy_1594 NC_010001.1 1964825 1965385 D KEGG: pth:PTH_0265 hypothetical membrane protein; hypothetical protein 1964825..1965385 Clostridium phytofermentans ISDg 5744416 YP_001558708.1 CDS Cphy_1595 NC_010001.1 1965566 1966474 D hypothetical protein 1965566..1966474 Clostridium phytofermentans ISDg 5744417 YP_001558709.1 CDS Cphy_1596 NC_010001.1 1966899 1969457 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: pin:Ping_2107 glycoside hydrolase, family 3 domain protein; glycoside hydrolase family 3 1966899..1969457 Clostridium phytofermentans ISDg 5744418 YP_001558710.1 CDS Cphy_1597 NC_010001.1 1969774 1970778 D NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; 2,3-diketo-L-gulonate reductase 1969774..1970778 Clostridium phytofermentans ISDg 5744419 YP_001558711.1 CDS Cphy_1598 NC_010001.1 1971446 1972876 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC3007 ATPase component of MDR-type ABC transporter, two ATPase domains; ABC transporter 1971446..1972876 Clostridium phytofermentans ISDg 5744420 YP_001558712.1 CDS Cphy_1599 NC_010001.1 1973255 1974241 D KEGG: tva:TVAG_216960 viral A-type inclusion protein, Pfam: NHR2 Rab5-bind BRE1 FlaC_arch Prefoldin_2 Laminin_I M EzrA IL6 DUF827 Syntaxin Erp_C HrpB7 DUF904 DUF1978 DUF972 Osmo_CC K-box bZIP_2 Fez1 Vicilin_N Apolipoprotein Spectrin Myosin_tail_1 Phage_GP20 Filament MAP65_ASE1 Tropomyosin Tup_N PspA_IM30 MAP7 PROSITE: GLU_RICH LYS_RICH GAT; hypothetical protein 1973255..1974241 Clostridium phytofermentans ISDg 5744421 YP_001558713.1 CDS Cphy_1600 NC_010001.1 1974864 1975601 D PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: cpr:CPR_0486 DNA-binding response regulator; LytTR family two component transcriptional regulator 1974864..1975601 Clostridium phytofermentans ISDg 5744422 YP_001558714.1 CDS Cphy_1601 NC_010001.1 1975622 1976962 D KEGG: cpr:CPR_0487 sensor histidine kinase; signal transduction histidine kinase regulating citrate/malate metabolism 1975622..1976962 Clostridium phytofermentans ISDg 5744423 YP_001558715.1 CDS Cphy_1602 NC_010001.1 1977172 1978428 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ckl:CKL_1537 hypothetical protein; PAS/PAC sensor-containing diguanylate cyclase complement(1977172..1978428) Clostridium phytofermentans ISDg 5744424 YP_001558716.1 CDS Cphy_1603 NC_010001.1 1978474 1978995 R PFAM: 4-vinyl reductase 4VR; KEGG: gur:Gura_0328 4-vinyl reductase, 4VR; 4-vinyl reductase 4VR complement(1978474..1978995) Clostridium phytofermentans ISDg 5744425 YP_001558717.1 CDS Cphy_1604 NC_010001.1 1979453 1979737 D PFAM: regulatory protein LuxR; KEGG: cps:CPS_1932 DNA-binding response regulator; LuxR family transcriptional regulator 1979453..1979737 Clostridium phytofermentans ISDg 5744426 YP_001558718.1 CDS Cphy_1605 NC_010001.1 1979970 1980269 D KEGG: mba:Mbar_A0863 hypothetical protein; hypothetical protein 1979970..1980269 Clostridium phytofermentans ISDg 5744427 YP_001558719.1 CDS Cphy_1606 NC_010001.1 1980311 1980604 D hypothetical protein 1980311..1980604 Clostridium phytofermentans ISDg 5744428 YP_001558720.1 CDS Cphy_1607 NC_010001.1 1980672 1981040 R KEGG: cdf:CD0634 hypothetical protein; hypothetical protein complement(1980672..1981040) Clostridium phytofermentans ISDg 5744429 YP_001558721.1 CDS Cphy_1608 NC_010001.1 1981367 1981924 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: amt:Amet_1400 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 1981367..1981924 Clostridium phytofermentans ISDg 5744430 YP_001558722.1 CDS Cphy_1609 NC_010001.1 1982218 1983036 R PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: cdf:CD1516 MerR-family transcriptional activator; MerR family transcriptional regulator complement(1982218..1983036) Clostridium phytofermentans ISDg 5744431 YP_001558723.1 CDS Cphy_1610 NC_010001.1 1983350 1983982 D PFAM: protein of unknown function DUF161; KEGG: cdf:CD1590 hypothetical protein; hypothetical protein 1983350..1983982 Clostridium phytofermentans ISDg 5744432 YP_001558724.1 CDS Cphy_1611 NC_010001.1 1984075 1985223 D KEGG: cpf:CPF_1146 hypothetical protein; hypothetical protein 1984075..1985223 Clostridium phytofermentans ISDg 5744433 YP_001558725.1 CDS Cphy_1612 NC_010001.1 1985551 1989780 D PFAM: Pectate lyase/Amb allergen; KEGG: cac:CAC0804 pectate lyase related protein, secreted; Pectate lyase/Amb allergen 1985551..1989780 Clostridium phytofermentans ISDg 5744434 YP_001558726.1 CDS Cphy_1613 NC_010001.1 1990158 1990991 D PFAM: regulatory protein MerR; KEGG: amt:Amet_0478 transcriptional regulator, MerR family; MerR family transcriptional regulator 1990158..1990991 Clostridium phytofermentans ISDg 5744435 YP_001558727.1 CDS Cphy_1614 NC_010001.1 1991341 1991967 D PFAM: glycosyl transferase family 51; KEGG: bpu:BPUM_0957 penicillin-binding protein 2C; glycosyl transferase family protein 1991341..1991967 Clostridium phytofermentans ISDg 5744436 YP_001558728.1 CDS Cphy_1617 NC_010001.1 1994587 1994985 D PFAM: NUDIX hydrolase; KEGG: msi:Msm_0691 mutator MutT protein (NUDIX domain); NUDIX hydrolase 1994587..1994985 Clostridium phytofermentans ISDg 5744438 YP_001558729.1 CDS Cphy_1618 NC_010001.1 1995126 1997270 D KEGG: mgr:MGG_03407 hypothetical protein Pfam: Glyco_hydro_67N; hypothetical protein 1995126..1997270 Clostridium phytofermentans ISDg 5744439 YP_001558730.1 CDS Cphy_1619 NC_010001.1 1997583 1997972 R hypothetical protein complement(1997583..1997972) Clostridium phytofermentans ISDg 5744440 YP_001558731.1 CDS Cphy_1620 NC_010001.1 1998403 1999086 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ckl:CKL_3005 predicted transcriptional regulator; two component transcriptional regulator 1998403..1999086 Clostridium phytofermentans ISDg 5744441 YP_001558732.1 CDS Cphy_1621 NC_010001.1 1999092 2000402 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ckl:CKL_3004 predicted sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1999092..2000402 Clostridium phytofermentans ISDg 5744442 YP_001558733.1 CDS Cphy_1622 NC_010001.1 2000607 2000990 D hypothetical protein 2000607..2000990 Clostridium phytofermentans ISDg 5744443 YP_001558734.1 CDS Cphy_1623 NC_010001.1 2001079 2002623 D PFAM: protein of unknown function DUF214; KEGG: amt:Amet_4745 protein of unknown function DUF214; hypothetical protein 2001079..2002623 Clostridium phytofermentans ISDg 5744444 YP_001558735.1 CDS Cphy_1624 NC_010001.1 2002633 2003304 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4744 ABC transporter related; ABC transporter 2002633..2003304 Clostridium phytofermentans ISDg 5744445 YP_001558736.1 CDS Cphy_1625 NC_010001.1 2003438 2004127 R PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; KEGG: btk:BT9727_2276 methyltransferase; methyltransferase type 12 complement(2003438..2004127) Clostridium phytofermentans ISDg 5744446 YP_001558737.1 CDS Cphy_1626 NC_010001.1 2004412 2005554 D PFAM: acyl-protein synthetase LuxE; KEGG: plu:plu4181 hypothetical protein; acyl-protein synthetase LuxE 2004412..2005554 Clostridium phytofermentans ISDg 5744447 YP_001558738.1 CDS Cphy_1627 NC_010001.1 2005551 2006798 D PFAM: acyl-CoA reductase; KEGG: pen:PSEEN0622 hypothetical protein; acyl-CoA reductase 2005551..2006798 Clostridium phytofermentans ISDg 5744448 YP_001558739.1 CDS Cphy_1628 NC_010001.1 2006810 2007739 D hypothetical protein 2006810..2007739 Clostridium phytofermentans ISDg 5744449 YP_001558740.1 CDS Cphy_1629 NC_010001.1 2007830 2008420 R hypothetical protein complement(2007830..2008420) Clostridium phytofermentans ISDg 5744450 YP_001558741.1 CDS Cphy_1630 NC_010001.1 2008475 2009668 R PFAM: aldo/keto reductase; KEGG: cbe:Cbei_2676 aldo/keto reductase; aldo/keto reductase complement(2008475..2009668) Clostridium phytofermentans ISDg 5744451 YP_001558742.1 CDS Cphy_1631 NC_010001.1 2009889 2010590 D PFAM: protein of unknown function DUF1037; KEGG: bcl:ABC1573 trehalose utilization protein; hypothetical protein 2009889..2010590 Clostridium phytofermentans ISDg 5744452 YP_001558743.1 CDS Cphy_1632 NC_010001.1 2010991 2013102 D KEGG: ctc:CTC02460 ATP-dependent DNA helicase rep; ATP-dependent DNA helicase rep 2010991..2013102 Clostridium phytofermentans ISDg 5744453 YP_001558744.1 CDS Cphy_1633 NC_010001.1 2013355 2013987 D PFAM: regulatory protein TetR; KEGG: ckl:CKL_0067 hypothetical protein; TetR family transcriptional regulator 2013355..2013987 Clostridium phytofermentans ISDg 5744454 YP_001558745.1 CDS Cphy_1634 NC_010001.1 2013974 2014867 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bld:BLi00349 ABC-2 type transport system ATP-binding protein; ABC transporter 2013974..2014867 Clostridium phytofermentans ISDg 5744455 YP_001558746.1 CDS Cphy_1635 NC_010001.1 2014860 2015660 D KEGG: bca:BCE_1989 membrane protein; hypothetical protein 2014860..2015660 Clostridium phytofermentans ISDg 5744456 YP_001558747.1 CDS Cphy_1636 NC_010001.1 2016021 2017391 D PFAM: chemotaxis sensory transducer; KEGG: mag:amb3192 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2016021..2017391 Clostridium phytofermentans ISDg 5744457 YP_001558748.1 CDS Cphy_1637 NC_010001.1 2017524 2018096 R PFAM: protein of unknown function DUF204; KEGG: cju:C8J_0163 integral membrane protein; hypothetical protein complement(2017524..2018096) Clostridium phytofermentans ISDg 5744458 YP_001558749.1 CDS Cphy_1638 NC_010001.1 2018690 2018911 D hypothetical protein 2018690..2018911 Clostridium phytofermentans ISDg 5744459 YP_001558750.1 CDS Cphy_1639 NC_010001.1 2019044 2020744 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY3742 hypothetical protein; methyl-accepting chemotaxis sensory transducer complement(2019044..2020744) Clostridium phytofermentans ISDg 5744460 YP_001558751.1 CDS Cphy_1640 NC_010001.1 2021389 2022114 D PFAM: glycoside hydrolase family 12; KEGG: sma:SAV2571 hypothetical protein; hypothetical protein 2021389..2022114 Clostridium phytofermentans ISDg 5744461 YP_001558752.1 CDS Cphy_1641 NC_010001.1 2023075 2023380 D KEGG: afw:Anae109_3838 metallophosphoesterase; metallophosphoesterase 2023075..2023380 Clostridium phytofermentans ISDg 5744462 YP_001558753.1 CDS Cphy_1642 NC_010001.1 2023528 2024505 D KEGG: ani:AN4890.2 hypothetical protein; hypothetical protein 2023528..2024505 Clostridium phytofermentans ISDg 5744463 YP_001558754.1 CDS Cphy_1643 NC_010001.1 2024682 2025863 R KEGG: tte:TTE0723 Lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; lysine 2,3-aminomutase YodO family protein complement(2024682..2025863) Clostridium phytofermentans ISDg 5744464 YP_001558755.1 CDS Cphy_1644 NC_010001.1 2025880 2026923 R PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; KEGG: mxa:MXAN_4097 D-alanine-D-alanine ligase family protein; D-alanine--D-alanine ligase complement(2025880..2026923) Clostridium phytofermentans ISDg 5744465 YP_001558756.1 CDS Cphy_1645 NC_010001.1 2027497 2028747 D KEGG: cdf:CD3350 glycosyl transferase; hypothetical protein 2027497..2028747 Clostridium phytofermentans ISDg 5744466 YP_001558757.1 CDS Cphy_1646 NC_010001.1 2029101 2029397 R KEGG: ppu:PP_1193 hypothetical protein; hypothetical protein complement(2029101..2029397) Clostridium phytofermentans ISDg 5744467 YP_001558758.1 CDS Cphy_1647 NC_010001.1 2029651 2030550 D PFAM: protein of unknown function UPF0074; regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: cac:CAC3494 transcription regulator, YOBV B.subtilis homolog; helix-turn-helix type 11 domain-containing protein 2029651..2030550 Clostridium phytofermentans ISDg 5744468 YP_001558759.1 CDS Cphy_1648 NC_010001.1 2030764 2031045 D PFAM: Domain of unknown function DUF1905; KEGG: dsy:DSY1231 hypothetical protein; hypothetical protein 2030764..2031045 Clostridium phytofermentans ISDg 5744469 YP_001558760.1 CDS Cphy_1649 NC_010001.1 2031152 2031319 D KEGG: cbe:Cbei_4140 hypothetical protein; hypothetical protein 2031152..2031319 Clostridium phytofermentans ISDg 5744470 YP_001558761.1 CDS Cphy_1650 NC_010001.1 2031316 2032047 D KEGG: cbf:CLI_1187 HD domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 2031316..2032047 Clostridium phytofermentans ISDg 5744471 YP_001558762.1 CDS Cphy_1651 NC_010001.1 2032316 2033584 D PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_0838 major facilitator family transporter; major facilitator transporter 2032316..2033584 Clostridium phytofermentans ISDg 5744472 YP_001558763.1 CDS Cphy_1652 NC_010001.1 2033850 2035121 D PFAM: glycoside hydrolase family 18; Peptidoglycan-binding LysM; SMART: chitinase II; KEGG: cno:NT01CX_1510 spore peptidogylcan hydrolase; peptidoglycan-binding LysM 2033850..2035121 Clostridium phytofermentans ISDg 5744473 YP_001558764.1 CDS Cphy_1653 NC_010001.1 2035516 2035947 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: ctc:CTC02359 hemerythrin-like domain protein DcrH; hemerythrin-like metal-binding protein 2035516..2035947 Clostridium phytofermentans ISDg 5744474 YP_001558765.1 CDS Cphy_1654 NC_010001.1 2036308 2037972 D TIGRFAM: RNA methyltransferase, TrmA family; PFAM: protein of unknown function Met10; conserved hypothetical protein; (Uracil-5)-methyltransferase; KEGG: cth:Cthe_1751 RNA methyltransferase, TrmA family; RNA methyltransferase 2036308..2037972 Clostridium phytofermentans ISDg 5744475 YP_001558766.1 CDS Cphy_1655 NC_010001.1 2038041 2038259 D KEGG: ckl:CKL_0533 hypothetical protein; hypothetical protein 2038041..2038259 Clostridium phytofermentans ISDg 5744476 YP_001558767.1 CDS Cphy_1656 NC_010001.1 2038430 2039125 D PFAM: DSBA oxidoreductase; KEGG: efa:EF1088 hypothetical protein; DSBA oxidoreductase 2038430..2039125 Clostridium phytofermentans ISDg 5744477 YP_001558768.1 CDS Cphy_1657 NC_010001.1 2039427 2040191 D KEGG: bth:BT_2376 hypothetical protein; hypothetical protein 2039427..2040191 Clostridium phytofermentans ISDg 5744478 YP_001558769.1 CDS Cphy_1658 NC_010001.1 2040473 2041585 D PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pth:PTH_2686 predicted oxidoreductases; aldo/keto reductase 2040473..2041585 Clostridium phytofermentans ISDg 5744479 YP_001558770.1 CDS Cphy_1659 NC_010001.1 2041739 2042551 D PFAM: alpha/beta hydrolase fold; KEGG: cbf:CLI_0921 non-haem haloperoxidase family protein; alpha/beta hydrolase 2041739..2042551 Clostridium phytofermentans ISDg 5744480 YP_001558771.1 CDS Cphy_1660 NC_010001.1 2042568 2043632 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cbe:Cbei_3316 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 2042568..2043632 Clostridium phytofermentans ISDg 5744481 YP_001558772.1 CDS Cphy_1661 NC_010001.1 2043831 2044175 R PFAM: helix-turn-helix HxlR type; KEGG: cbe:Cbei_3137 transcriptional regulator, HxlR family; HxlR family transcriptional regulator complement(2043831..2044175) Clostridium phytofermentans ISDg 5741492 YP_001558773.1 CDS Cphy_1662 NC_010001.1 2044365 2044691 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3138 cupin 2, conserved barrel domain protein; cupin 2044365..2044691 Clostridium phytofermentans ISDg 5741493 YP_001558774.1 CDS Cphy_1663 NC_010001.1 2044731 2045111 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bld:BLi04061 YwbC; glyoxalase/bleomycin resistance protein/dioxygenase 2044731..2045111 Clostridium phytofermentans ISDg 5741494 YP_001558775.1 CDS Cphy_1664 NC_010001.1 2045639 2045971 D hypothetical protein 2045639..2045971 Clostridium phytofermentans ISDg 5741495 YP_001558776.1 CDS Cphy_1665 NC_010001.1 2045989 2046309 D KEGG: dvl:Dvul_2626 hypothetical protein; hypothetical protein 2045989..2046309 Clostridium phytofermentans ISDg 5741496 YP_001558777.1 CDS Cphy_1666 NC_010001.1 2046953 2047750 D KEGG: chy:CHY_2116 phosphate ABC transporter, ATP-binding protein PstB; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase 2046953..2047750 Clostridium phytofermentans ISDg 5741497 YP_001558778.1 CDS Cphy_1667 NC_010001.1 2047894 2048733 D TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_1610 phosphate binding protein; phosphate binding protein 2047894..2048733 Clostridium phytofermentans ISDg 5741498 YP_001558779.1 CDS Cphy_1668 NC_010001.1 2048730 2049575 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_1611 phosphate ABC transporter, inner membrane subunit PstC; phosphate ABC transporter, inner membrane subunit PstC 2048730..2049575 Clostridium phytofermentans ISDg 5741499 YP_001558780.1 CDS Cphy_1669 NC_010001.1 2049583 2050419 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_1612 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter, inner membrane subunit PstA 2049583..2050419 Clostridium phytofermentans ISDg 5741500 YP_001558781.1 CDS Cphy_1670 NC_010001.1 2050430 2051191 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: deb:DehaBAV1_0229 phosphate ABC transporter, ATPase subunit; ABC transporter 2050430..2051191 Clostridium phytofermentans ISDg 5741501 YP_001558782.1 CDS Cphy_1671 NC_010001.1 2051237 2051890 D TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: amt:Amet_4620 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU 2051237..2051890 Clostridium phytofermentans ISDg 5741502 YP_001558783.1 CDS Cphy_1672 NC_010001.1 2052087 2052590 R PFAM: protein of unknown function DUF985; KEGG: cbf:CLI_0821 hypothetical protein; hypothetical protein complement(2052087..2052590) Clostridium phytofermentans ISDg 5741503 YP_001558784.1 CDS Cphy_1673 NC_010001.1 2052787 2053758 R PFAM: Excinuclease ABC C subunit domain protein; KEGG: cbf:CLI_3343 GIY-YIG domain protein; excinuclease ABC subunit C complement(2052787..2053758) Clostridium phytofermentans ISDg 5741504 YP_001558785.1 CDS Cphy_1674 NC_010001.1 2054043 2055077 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tde:TDE2369 hypothetical protein; redoxin domain-containing protein complement(2054043..2055077) Clostridium phytofermentans ISDg 5741505 YP_001558786.1 CDS Cphy_1675 NC_010001.1 2055095 2055943 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cdf:CD1872 iron-sulfur-binding membrane protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(2055095..2055943) Clostridium phytofermentans ISDg 5741506 YP_001558787.1 CDS Cphy_1676 NC_010001.1 2056682 2057341 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC1506 response regulator (CheY-like receiver domain and a HTH); two component transcriptional regulator 2056682..2057341 Clostridium phytofermentans ISDg 5741507 YP_001558788.1 CDS Cphy_1677 NC_010001.1 2057338 2058771 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cac:CAC1507 sensory transduction histidine kinase (with HAMP domain); integral membrane sensor signal transduction histidine kinase 2057338..2058771 Clostridium phytofermentans ISDg 5741508 YP_001558789.1 CDS Cphy_1678 NC_010001.1 2058755 2059531 D hypothetical protein 2058755..2059531 Clostridium phytofermentans ISDg 5741509 YP_001558790.1 CDS Cphy_1679 NC_010001.1 2059856 2060530 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amt:Amet_1917 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2059856..2060530 Clostridium phytofermentans ISDg 5741510 YP_001558791.1 CDS Cphy_1680 NC_010001.1 2060527 2061597 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: amt:Amet_1918 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2060527..2061597 Clostridium phytofermentans ISDg 5741511 YP_001558792.1 CDS Cphy_1681 NC_010001.1 2061728 2063485 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1261 hypothetical protein; ABC transporter 2061728..2063485 Clostridium phytofermentans ISDg 5741512 YP_001558793.1 CDS Cphy_1682 NC_010001.1 2063482 2065323 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1260 hypothetical protein; ABC transporter 2063482..2065323 Clostridium phytofermentans ISDg 5741513 YP_001558794.1 CDS Cphy_1683 NC_010001.1 2065548 2066213 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: amt:Amet_1428 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 2065548..2066213 Clostridium phytofermentans ISDg 5741514 YP_001558795.1 CDS Cphy_1684 NC_010001.1 2066377 2067711 R TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: chu:CHU_1815 selenocysteine lyase; SufS subfamily cysteine desulfurase complement(2066377..2067711) Clostridium phytofermentans ISDg 5741515 YP_001558796.1 CDS Cphy_1685 NC_010001.1 2067701 2068645 R KEGG: chu:CHU_1814 hypothetical protein; hypothetical protein complement(2067701..2068645) Clostridium phytofermentans ISDg 5741516 YP_001558797.1 CDS Cphy_1686 NC_010001.1 2068969 2070048 R KEGG: cbf:CLI_0723 hypothetical protein; hypothetical protein complement(2068969..2070048) Clostridium phytofermentans ISDg 5741517 YP_001558798.1 CDS Cphy_1687 NC_010001.1 2070592 2071602 D PFAM: polysaccharide deacetylase; KEGG: sde:Sde_3061 xylanase/chitin deacetylase-like; polysaccharide deacetylase 2070592..2071602 Clostridium phytofermentans ISDg 5741518 YP_001558799.1 CDS Cphy_1688 NC_010001.1 2071762 2073555 D PFAM: glycosyl hydrolase BNR repeat-containing protein; Two component regulator propeller; KEGG: sfu:Sfum_3494 hypothetical protein; two component regulator propeller domain-containing protein 2071762..2073555 Clostridium phytofermentans ISDg 5741519 YP_001558800.1 CDS Cphy_1689 NC_010001.1 2074008 2075246 D PFAM: sodium/hydrogen exchanger; KEGG: cbh:CLC_2648 transporter, monovalent cation:proton antiporter-2 (CPA2) family; sodium/hydrogen exchanger 2074008..2075246 Clostridium phytofermentans ISDg 5741520 YP_001558801.1 CDS Cphy_1690 NC_010001.1 2075282 2075632 D KEGG: cth:Cthe_1401 hypothetical protein; hypothetical protein 2075282..2075632 Clostridium phytofermentans ISDg 5741521 YP_001558802.1 CDS Cphy_1691 NC_010001.1 2075841 2076455 D hypothetical protein 2075841..2076455 Clostridium phytofermentans ISDg 5741522 YP_001558803.1 CDS Cphy_1692 NC_010001.1 2076631 2076984 D KEGG: cbh:CLC_0359 transcriptional regulator, AraC family; AraC family transcriptional regulator 2076631..2076984 Clostridium phytofermentans ISDg 5741523 YP_001558804.1 CDS Cphy_1693 NC_010001.1 2077186 2077641 D hypothetical protein 2077186..2077641 Clostridium phytofermentans ISDg 5741524 YP_001558805.1 CDS Cphy_1694 NC_010001.1 2078054 2081500 R PFAM: Collagen triple helix repeat; KEGG: mlo:mlr0587 hypothetical glycine-rich protein; triple helix repeat-containing collagen complement(2078054..2081500) Clostridium phytofermentans ISDg 5741525 YP_001558806.1 CDS Cphy_1695 NC_010001.1 2081574 2082656 R PFAM: glycosyl transferase family 2; KEGG: cdf:CD3350 glycosyl transferase; glycosyl transferase family protein complement(2081574..2082656) Clostridium phytofermentans ISDg 5741526 YP_001558807.1 CDS Cphy_1696 NC_010001.1 2082909 2083400 D PFAM: regulatory protein MarR; Penicillinase repressor; KEGG: amt:Amet_1479 transcriptional regulator, TrmB; MarR family transcriptional regulator 2082909..2083400 Clostridium phytofermentans ISDg 5741527 YP_001558808.1 CDS Cphy_1697 NC_010001.1 2083585 2084766 D KEGG: fnu:FN1538 arsenical pump-driving ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA 2083585..2084766 Clostridium phytofermentans ISDg 5741528 YP_001558809.1 CDS Cphy_1698 NC_010001.1 2084993 2086150 D PFAM: Anion-transporting ATPase; KEGG: fnu:FN1537 arsenical pump-driving ATPase; arsenite-transporting ATPase 2084993..2086150 Clostridium phytofermentans ISDg 5741529 YP_001558810.1 CDS Cphy_1699 NC_010001.1 2086195 2087451 D PFAM: condensation domain protein; phosphopantetheine-binding; KEGG: bbt:BBta_1089 non-ribosomal peptide synthase; phosphopantetheine-binding protein 2086195..2087451 Clostridium phytofermentans ISDg 5741530 YP_001558811.1 CDS Cphy_1700 NC_010001.1 2087735 2087974 D KEGG: cbh:CLC_0903 non-haem haloperoxidase family protein; non-heme haloperoxidase family protein 2087735..2087974 Clostridium phytofermentans ISDg 5741531 YP_001558812.1 CDS Cphy_1701 NC_010001.1 2088021 2088395 R KEGG: spe:Spro_2493 cysteine desulfurase, SufS subfamily; SufS subfamily cysteine desulfurase complement(2088021..2088395) Clostridium phytofermentans ISDg 5741532 YP_001558813.1 CDS Cphy_1702 NC_010001.1 2088404 2088520 R hypothetical protein complement(2088404..2088520) Clostridium phytofermentans ISDg 5741533 YP_001558814.1 CDS Cphy_1703 NC_010001.1 2088779 2089852 R KEGG: cbf:CLI_0723 hypothetical protein; hypothetical protein complement(2088779..2089852) Clostridium phytofermentans ISDg 5741534 YP_001558815.1 CDS Cphy_1704 NC_010001.1 2090169 2091248 R KEGG: cbf:CLI_0723 hypothetical protein; hypothetical protein complement(2090169..2091248) Clostridium phytofermentans ISDg 5741535 YP_001558816.1 CDS Cphy_1705 NC_010001.1 2091851 2092915 D hypothetical protein 2091851..2092915 Clostridium phytofermentans ISDg 5741536 YP_001558817.1 CDS Cphy_1706 NC_010001.1 2092890 2095226 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: csc:Csac_2727 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 2092890..2095226 Clostridium phytofermentans ISDg 5741537 YP_001558818.1 CDS Cphy_1707 NC_010001.1 2095571 2097463 D KEGG: ani:AN4010.2 hypothetical protein; hypothetical protein 2095571..2097463 Clostridium phytofermentans ISDg 5741538 YP_001558819.1 CDS Cphy_1708 NC_010001.1 2097665 2099221 D KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein; extracellular solute-binding protein 2097665..2099221 Clostridium phytofermentans ISDg 5741539 YP_001558820.1 CDS Cphy_1709 NC_010001.1 2099418 2100341 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2339 ABC transporter, permease; binding-protein-dependent transport system inner membrane protein 2099418..2100341 Clostridium phytofermentans ISDg 5741540 YP_001558821.1 CDS Cphy_1710 NC_010001.1 2100360 2101262 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2338 ABC transporter, permease; binding-protein-dependent transport systems inner membrane component 2100360..2101262 Clostridium phytofermentans ISDg 5741541 YP_001558822.1 CDS Cphy_1711 NC_010001.1 2101420 2103282 D KEGG: bvu:BVU_0121 glycoside hydrolase family 28; endopygalactorunase-like protein 2101420..2103282 Clostridium phytofermentans ISDg 5741462 YP_001558823.1 CDS Cphy_1712 NC_010001.1 2103332 2104336 D KEGG: tpt:Tpet_1741 esterase/lipase-like protein; esterase/lipase-like protein 2103332..2104336 Clostridium phytofermentans ISDg 5741463 YP_001558824.1 CDS Cphy_1713 NC_010001.1 2104536 2105900 R PFAM: coagulation factor 5/8 type domain protein; KEGG: mxa:MXAN_5269 S1D (lysyl endopeptidase) subfamily C-terminal domain protein; coagulation factor 5/8 type domain-containing protein complement(2104536..2105900) Clostridium phytofermentans ISDg 5741464 YP_001558825.1 CDS Cphy_1714 NC_010001.1 2106148 2109003 D PFAM: coagulation factor 5/8 type domain protein; PKD domain containing protein; glycoside hydrolase family 85; KEGG: cpf:CPF_0285 endo-beta-N-acetylglucosaminidase; glycoside hydrolase family protein 2106148..2109003 Clostridium phytofermentans ISDg 5741465 YP_001558826.1 CDS Cphy_1715 NC_010001.1 2109418 2110368 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2339 ABC transporter, permease; binding-protein-dependent transport system inner membrane protein 2109418..2110368 Clostridium phytofermentans ISDg 5741466 YP_001558827.1 CDS Cphy_1716 NC_010001.1 2110380 2111312 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_2050 sugar transport system (permease) (binding protein dependent transporter); binding-protein-dependent transport system inner membrane protein 2110380..2111312 Clostridium phytofermentans ISDg 5741467 YP_001558828.1 CDS Cphy_1717 NC_010001.1 2111371 2112876 D PFAM: extracellular solute-binding protein family 1; KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein; extracellular solute-binding protein 2111371..2112876 Clostridium phytofermentans ISDg 5741468 YP_001558829.1 CDS Cphy_1718 NC_010001.1 2113177 2114133 D PFAM: glycosidase PH1107-related; KEGG: bfs:BF1316 hypothetical protein; glycosidase PH1107-like protein 2113177..2114133 Clostridium phytofermentans ISDg 5741469 YP_001558830.1 CDS Cphy_1719 NC_010001.1 2114171 2115454 D PFAM: conserved hypothetical protein; KEGG: bha:BH0790 hypothetical protein; hypothetical protein 2114171..2115454 Clostridium phytofermentans ISDg 5741470 YP_001558831.1 CDS Cphy_1720 NC_010001.1 2115625 2118756 D PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; Glycoside hydrolase family 38 central region; KEGG: gka:GK1902 alpha-D-mannosidase; glycoside hydrolase family protein 2115625..2118756 Clostridium phytofermentans ISDg 5741471 YP_001558832.1 CDS Cphy_1721 NC_010001.1 2118995 2120716 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cpr:CPR_2057 sensor histidine kinase; histidine kinase internal region 2118995..2120716 Clostridium phytofermentans ISDg 5741472 YP_001558833.1 CDS Cphy_1722 NC_010001.1 2120709 2122235 D PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cpr:CPR_2056 DNA-binding response regulator, AraC family; two component AraC family transcriptional regulator 2120709..2122235 Clostridium phytofermentans ISDg 5741473 YP_001558834.1 CDS Cphy_1723 NC_010001.1 2122313 2123833 D PFAM: extracellular solute-binding protein family 1; KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein; extracellular solute-binding protein 2122313..2123833 Clostridium phytofermentans ISDg 5741474 YP_001558835.1 CDS Cphy_1724 NC_010001.1 2123969 2125384 D PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_2413 MATE efflux family protein; multi anti extrusion protein MatE 2123969..2125384 Clostridium phytofermentans ISDg 5741475 YP_001558836.1 CDS Cphy_1725 NC_010001.1 2125527 2125907 D PFAM: Domain of unknown function DUF1801; hypothetical protein 2125527..2125907 Clostridium phytofermentans ISDg 5741476 YP_001558837.1 CDS Cphy_1726 NC_010001.1 2126093 2127109 D hypothetical protein 2126093..2127109 Clostridium phytofermentans ISDg 5741477 YP_001558838.1 CDS Cphy_1727 NC_010001.1 2127262 2127525 D KEGG: cbh:CLC_0444 hypothetical protein; hypothetical protein 2127262..2127525 Clostridium phytofermentans ISDg 5741478 YP_001558839.1 CDS Cphy_1728 NC_010001.1 2127956 2128729 D TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: swo:Swol_1122 hypothetical protein; Ku protein 2127956..2128729 Clostridium phytofermentans ISDg 5741479 YP_001558840.1 CDS Cphy_1729 NC_010001.1 2128734 2131175 D TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: mRNA capping enzyme; DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: dsy:DSY0616 hypothetical protein; DNA ligase D 2128734..2131175 Clostridium phytofermentans ISDg 5741480 YP_001558841.1 CDS Cphy_1730 NC_010001.1 2131517 2133430 D PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); KEGG: cth:Cthe_3024 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 2131517..2133430 Clostridium phytofermentans ISDg 5741481 YP_001558842.1 CDS Cphy_1731 NC_010001.1 2133430 2134290 D PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: cth:Cthe_3023 respiratory-chain NADH dehydrogenase, subunit 1; respiratory-chain NADH dehydrogenase subunit 1 2133430..2134290 Clostridium phytofermentans ISDg 5741482 YP_001558843.1 CDS Cphy_1732 NC_010001.1 2134384 2134818 D PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cth:Cthe_3022 NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit 2134384..2134818 Clostridium phytofermentans ISDg 5741483 YP_001558844.1 CDS Cphy_1733 NC_010001.1 2134871 2135224 D KEGG: cth:Cthe_3021 Ech hydrogenase, subunit EchD; ech hydrogenase, subunit EchD 2134871..2135224 Clostridium phytofermentans ISDg 5741407 YP_001558845.1 CDS Cphy_1734 NC_010001.1 2135224 2136303 D PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: cth:Cthe_3020 NADH dehydrogenase (ubiquinone); NADH-ubiquinone oxidoreductase chain 49kDa 2135224..2136303 Clostridium phytofermentans ISDg 5741408 YP_001558846.1 CDS Cphy_1735 NC_010001.1 2136423 2136785 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cth:Cthe_3019 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 2136423..2136785 Clostridium phytofermentans ISDg 5741409 YP_001558847.1 CDS Cphy_1736 NC_010001.1 2136755 2137093 D PFAM: hydrogenase expression/synthesis HypA; KEGG: cth:Cthe_3018 hydrogenase expression/synthesis, HypA; hydrogenase nickel incorporation protein HypA 2136755..2137093 Clostridium phytofermentans ISDg 5741410 YP_001558848.1 CDS Cphy_1737 NC_010001.1 2137135 2137785 D TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: cth:Cthe_3017 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 2137135..2137785 Clostridium phytofermentans ISDg 5741411 YP_001558849.1 CDS Cphy_1738 NC_010001.1 2137812 2140190 D TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: cth:Cthe_3016 (NiFe) hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF 2137812..2140190 Clostridium phytofermentans ISDg 5741412 YP_001558850.1 CDS Cphy_1739 NC_010001.1 2140251 2140478 D TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: cth:Cthe_3015 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF 2140251..2140478 Clostridium phytofermentans ISDg 5741413 YP_001558851.1 CDS Cphy_1740 NC_010001.1 2140465 2141511 D PFAM: hydrogenase formation HypD protein; KEGG: cth:Cthe_3014 hydrogenase formation HypD protein; hydrogenase formation HypD protein 2140465..2141511 Clostridium phytofermentans ISDg 5741414 YP_001558852.1 CDS Cphy_1741 NC_010001.1 2141595 2142572 D TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cth:Cthe_3013 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 2141595..2142572 Clostridium phytofermentans ISDg 5741415 YP_001558853.1 CDS Cphy_1742 NC_010001.1 2142860 2144422 R KEGG: cac:CA_P0121 Leu-rich protein family protein, YaeG (E.coli) homolog; transcriptional regulator CdaR complement(2142860..2144422) Clostridium phytofermentans ISDg 5741416 YP_001558854.1 CDS Cphy_1743 NC_010001.1 2144616 2147429 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Acetoacetate decarboxylase; KEGG: cac:CAC1044 NADH:flavin oxidoreductase, possible NADH oxidase; NADH:flavin oxidoreductase 2144616..2147429 Clostridium phytofermentans ISDg 5741417 YP_001558855.1 CDS Cphy_1744 NC_010001.1 2147485 2148261 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: drm:Dred_3003 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2147485..2148261 Clostridium phytofermentans ISDg 5741418 YP_001558856.1 CDS Cphy_1745 NC_010001.1 2148570 2149625 D KEGG: lpf:lpl1156 methylated-DNA-[protein]-cysteine S-methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Ada metal-binding domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SMART: helix-turn-helix- domain containing protein AraC type; methylated-DNA--protein-cysteine methyltransferase 2148570..2149625 Clostridium phytofermentans ISDg 5741419 YP_001558857.1 CDS Cphy_1746 NC_010001.1 2149901 2150887 D KEGG: cbe:Cbei_1278 hypothetical protein; 3-carboxymuconate cyclase 2149901..2150887 Clostridium phytofermentans ISDg 5741420 YP_001558858.1 CDS Cphy_1747 NC_010001.1 2151434 2156131 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: bcl:ABC0752 minor extracellular serine protease; peptidase S8/S53 subtilisin kexin sedolisin 2151434..2156131 Clostridium phytofermentans ISDg 5741421 YP_001558859.1 CDS Cphy_1748 NC_010001.1 2156301 2156885 D hypothetical protein 2156301..2156885 Clostridium phytofermentans ISDg 5741422 YP_001558860.1 CDS Cphy_1749 NC_010001.1 2157079 2157615 R hypothetical protein complement(2157079..2157615) Clostridium phytofermentans ISDg 5741423 YP_001558861.1 CDS Cphy_1750 NC_010001.1 2158070 2159029 D PFAM: glycosyl hydrolase family 88; KEGG: cne:CNL06720 hypothetical protein; glycosyl hydrolase family protein 2158070..2159029 Clostridium phytofermentans ISDg 5741424 YP_001558862.1 CDS Cphy_1751 NC_010001.1 2159506 2160132 D PFAM: NADPH-dependent FMN reductase; KEGG: cbf:CLI_3546 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 2159506..2160132 Clostridium phytofermentans ISDg 5741425 YP_001558863.1 CDS Cphy_1752 NC_010001.1 2160241 2161086 D PFAM: aldo/keto reductase; KEGG: cbf:CLI_3545 oxidoreductase, aldo/keto reductase family; 2,5-didehydrogluconate reductase 2160241..2161086 Clostridium phytofermentans ISDg 5741426 YP_001558864.1 CDS Cphy_1753 NC_010001.1 2161296 2162033 R PFAM: aminotransferase class V; KEGG: cdf:CD3032 aminotransferase; class V aminotransferase complement(2161296..2162033) Clostridium phytofermentans ISDg 5741427 YP_001558865.1 CDS Cphy_1754 NC_010001.1 2162021 2162371 R KEGG: cdf:CD3032 aminotransferase; aminotransferase complement(2162021..2162371) Clostridium phytofermentans ISDg 5741428 YP_001558866.1 CDS Cphy_1755 NC_010001.1 2162543 2162995 D PFAM: regulatory protein MarR; KEGG: ctc:CTC01897 transcriptional regulator, MarR family; MarR family transcriptional regulator 2162543..2162995 Clostridium phytofermentans ISDg 5741429 YP_001558867.1 CDS Cphy_1756 NC_010001.1 2162992 2163567 D PFAM: cyclase family protein; KEGG: ctc:CTC01896 polyketide cyclase; cyclase family protein 2162992..2163567 Clostridium phytofermentans ISDg 5741430 YP_001558868.1 CDS Cphy_1757 NC_010001.1 2163877 2164755 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ckl:CKL_3374 predicted transcriptional regulator; LysR family transcriptional regulator complement(2163877..2164755) Clostridium phytofermentans ISDg 5741431 YP_001558869.1 CDS Cphy_1758 NC_010001.1 2164874 2166220 D PFAM: sodium:neurotransmitter symporter; KEGG: fnu:FN1989 sodium-dependent tyrosine transporter; sodium:neurotransmitter symporter 2164874..2166220 Clostridium phytofermentans ISDg 5741432 YP_001558870.1 CDS Cphy_1759 NC_010001.1 2166419 2167096 R PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ctc:CTC01925 2-haloalkanoic acid dehalogenase I; hydrolase complement(2166419..2167096) Clostridium phytofermentans ISDg 5741433 YP_001558871.1 CDS Cphy_1760 NC_010001.1 2167112 2167738 R KEGG: ctc:CTC01924 membrane spanning protein; membrane spanning protein complement(2167112..2167738) Clostridium phytofermentans ISDg 5741434 YP_001558872.1 CDS Cphy_1761 NC_010001.1 2167838 2168455 D PFAM: cyclic nucleotide-binding; KEGG: ctc:CTC01923 catabolite gene activator; cyclic nucleotide-binding protein 2167838..2168455 Clostridium phytofermentans ISDg 5741435 YP_001558873.1 CDS Cphy_1762 NC_010001.1 2168688 2169272 D KEGG: bha:BH0317 hypothetical protein; TetR family transcriptional regulator 2168688..2169272 Clostridium phytofermentans ISDg 5741436 YP_001558874.1 CDS Cphy_1763 NC_010001.1 2169265 2170761 D PFAM: FAD dependent oxidoreductase; KEGG: mhu:Mhun_2065 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2169265..2170761 Clostridium phytofermentans ISDg 5741437 YP_001558875.1 CDS Cphy_1764 NC_010001.1 2170853 2171395 D PFAM: protein of unknown function DUF1697; KEGG: det:DET1387 hypothetical protein; hypothetical protein 2170853..2171395 Clostridium phytofermentans ISDg 5741438 YP_001558876.1 CDS Cphy_1765 NC_010001.1 2171662 2172333 D PFAM: isochorismatase hydrolase; KEGG: cth:Cthe_1178 isochorismatase hydrolase; isochorismatase hydrolase 2171662..2172333 Clostridium phytofermentans ISDg 5741439 YP_001558877.1 CDS Cphy_1766 NC_010001.1 2172334 2172660 D PFAM: TfoX domain protein; KEGG: cbf:CLI_0805 TfoX domain protein; TfoX domain-containing protein 2172334..2172660 Clostridium phytofermentans ISDg 5741440 YP_001558878.1 CDS Cphy_1767 NC_010001.1 2172848 2173201 R hypothetical protein complement(2172848..2173201) Clostridium phytofermentans ISDg 5741441 YP_001558879.1 CDS Cphy_1768 NC_010001.1 2173688 2175943 D KEGG: cbe:Cbei_0751 PTS system, glucose subfamily, IIA subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; PTS system, glucose subfamily, IIA subunit 2173688..2175943 Clostridium phytofermentans ISDg 5741442 YP_001558880.1 CDS Cphy_1769 NC_010001.1 2176081 2176338 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: blo:BL0412 histidine-containing phosphocarrier protein (Hpr protein) of Pts transport system; phosphotransferase system, phosphocarrier protein HPr 2176081..2176338 Clostridium phytofermentans ISDg 5741443 YP_001558881.1 CDS Cphy_1770 NC_010001.1 2176394 2178028 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: blo:BL0411 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 2176394..2178028 Clostridium phytofermentans ISDg 5741444 YP_001558882.1 CDS Cphy_1771 NC_010001.1 2178381 2178704 D hypothetical protein 2178381..2178704 Clostridium phytofermentans ISDg 5741445 YP_001558883.1 CDS Cphy_1774 NC_010001.1 2180350 2183319 R hypothetical protein complement(2180350..2183319) Clostridium phytofermentans ISDg 5741447 YP_001558884.1 CDS Cphy_1775 NC_010001.1 2183504 2189857 R PFAM: coagulation factor 5/8 type domain protein; S-layer domain protein; KEGG: cbe:Cbei_2675 coagulation factor 5/8 type domain protein; S-layer domain-containing protein complement(2183504..2189857) Clostridium phytofermentans ISDg 5741448 YP_001558885.1 CDS Cphy_1776 NC_010001.1 2190317 2190892 R KEGG: cbe:Cbei_2858 hypothetical protein; hypothetical protein complement(2190317..2190892) Clostridium phytofermentans ISDg 5741449 YP_001558886.1 CDS Cphy_1777 NC_010001.1 2191211 2192206 R KEGG: swo:Swol_1838 hypothetical protein; hypothetical protein complement(2191211..2192206) Clostridium phytofermentans ISDg 5741450 YP_001558887.1 CDS Cphy_1778 NC_010001.1 2192309 2192749 D KEGG: dsy:DSY1202 hypothetical protein; hypothetical protein 2192309..2192749 Clostridium phytofermentans ISDg 5741451 YP_001558888.1 CDS Cphy_1779 NC_010001.1 2192857 2193663 R PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; anaerobic cobalt chelatase; KEGG: tde:TDE2656 cobalt chelatase; anaerobic cobalt chelatase complement(2192857..2193663) Clostridium phytofermentans ISDg 5741452 YP_001558889.1 CDS Cphy_1780 NC_010001.1 2193934 2194968 R PFAM: conserved hypothetical protein; KEGG: cbf:CLI_0435 hypothetical protein; hypothetical protein complement(2193934..2194968) Clostridium phytofermentans ISDg 5741453 YP_001558890.1 CDS Cphy_1781 NC_010001.1 2195067 2196020 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: cdf:CD1796 nitrite and sulfite reductase subunit; nitrite and sulfite reductase 4Fe-4S region complement(2195067..2196020) Clostridium phytofermentans ISDg 5741454 YP_001558891.1 CDS Cphy_1782 NC_010001.1 2196182 2197801 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cdf:CD1797 pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2196182..2197801) Clostridium phytofermentans ISDg 5741455 YP_001558892.1 CDS Cphy_1783 NC_010001.1 2197991 2198899 D PFAM: regulatory protein MarR; regulatory protein LysR; LysR substrate-binding; KEGG: cdf:CD1798 LysR-family transcriptional regulator; MarR family transcriptional regulator 2197991..2198899 Clostridium phytofermentans ISDg 5741456 YP_001558893.1 CDS Cphy_1784 NC_010001.1 2199381 2200622 D KEGG: cth:Cthe_2525 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; glutamyl-tRNA reductase 2199381..2200622 Clostridium phytofermentans ISDg 5741457 YP_001558894.1 CDS Cphy_1785 NC_010001.1 2200671 2201126 D TIGRFAM: siroheme synthase; KEGG: cth:Cthe_2526 precorrin-2 oxidase / ferrochelatase; siroheme synthase 2200671..2201126 Clostridium phytofermentans ISDg 5741458 YP_001558895.1 CDS hemC NC_010001.1 2201182 2202087 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 2201182..2202087 Clostridium phytofermentans ISDg 5741459 YP_001558896.1 CDS Cphy_1787 NC_010001.1 2202084 2203577 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: cth:Cthe_2528 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 2202084..2203577 Clostridium phytofermentans ISDg 5741460 YP_001558897.1 CDS Cphy_1788 NC_010001.1 2203765 2204748 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 2203765..2204748 Clostridium phytofermentans ISDg 5741461 YP_001558898.1 CDS Cphy_1789 NC_010001.1 2204748 2206028 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 2204748..2206028 Clostridium phytofermentans ISDg 5743078 YP_001558899.1 CDS Cphy_1790 NC_010001.1 2206410 2206877 D TIGRFAM: DNA binding domain protein, excisionase family; KEGG: cbe:Cbei_3628 DNA binding domain, excisionase family; DNA binding domain-containing protein 2206410..2206877 Clostridium phytofermentans ISDg 5743079 YP_001558900.1 CDS Cphy_1791 NC_010001.1 2206918 2207283 D KEGG: btk:BT9727_2493 hypothetical protein; hypothetical protein 2206918..2207283 Clostridium phytofermentans ISDg 5743080 YP_001558901.1 CDS Cphy_1792 NC_010001.1 2207779 2209167 D PFAM: extracellular solute-binding protein family 1; KEGG: pac:PPA0085 periplasmic protein; extracellular solute-binding protein 2207779..2209167 Clostridium phytofermentans ISDg 5743081 YP_001558902.1 CDS Cphy_1793 NC_010001.1 2209241 2210020 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cdf:CD0691 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2209241..2210020 Clostridium phytofermentans ISDg 5743082 YP_001558903.1 CDS Cphy_1795 NC_010001.1 2210715 2211404 R hypothetical protein complement(2210715..2211404) Clostridium phytofermentans ISDg 5743084 YP_001558904.1 CDS Cphy_1796 NC_010001.1 2212085 2212777 D PFAM: beta-lactamase domain protein; KEGG: cbe:Cbei_3495 beta-lactamase domain protein; beta-lactamase domain-containing protein 2212085..2212777 Clostridium phytofermentans ISDg 5743085 YP_001558905.1 CDS Cphy_1797 NC_010001.1 2213030 2213542 D KEGG: cno:NT01CX_1075 hypothetical protein; hypothetical protein 2213030..2213542 Clostridium phytofermentans ISDg 5743086 YP_001558906.1 CDS Cphy_1798 NC_010001.1 2213800 2214297 D KEGG: cha:CHAB381_0329 mercuric transport protein periplasmic component; mercuric transport periplasmic protein 2213800..2214297 Clostridium phytofermentans ISDg 5743087 YP_001558907.1 CDS Cphy_1799 NC_010001.1 2214443 2216098 R PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; SMART: chitinase II; KEGG: sco:SCO5003 chitinase A precursor; glycoside hydrolase family protein complement(2214443..2216098) Clostridium phytofermentans ISDg 5743088 YP_001558908.1 CDS Cphy_1800 NC_010001.1 2216331 2218289 R PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; SMART: chitinase II; KEGG: cbe:Cbei_2830 glycoside hydrolase, family 18; glycoside hydrolase family protein complement(2216331..2218289) Clostridium phytofermentans ISDg 5743089 YP_001558909.1 CDS Cphy_1801 NC_010001.1 2219386 2221623 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lwe:lwe2070 UvrABC system protein A; ABC transporter 2219386..2221623 Clostridium phytofermentans ISDg 5743090 YP_001558910.1 CDS Cphy_1802 NC_010001.1 2221794 2223398 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; KEGG: blo:BL1038 possible calcium-transporting ATPase 10, plasma membrane-type; P-type HAD superfamily ATPase complement(2221794..2223398) Clostridium phytofermentans ISDg 5743091 YP_001558911.1 CDS Cphy_1803 NC_010001.1 2223909 2225213 D KEGG: ckl:CKL_2277 predicted transposase; transposase 2223909..2225213 Clostridium phytofermentans ISDg 5743092 YP_001558912.1 CDS Cphy_1804 NC_010001.1 2225682 2228213 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mba:Mbar_A2103 magnesium transport P-type atpase; P-type HAD superfamily ATPase complement(2225682..2228213) Clostridium phytofermentans ISDg 5743093 YP_001558913.1 CDS Cphy_1805 NC_010001.1 2228494 2229168 R PFAM: helix-turn-helix domain protein; protein of unknown function DUF1232; KEGG: ckl:CKL_1607 transcriptional regulator; XRE family transcriptional regulator complement(2228494..2229168) Clostridium phytofermentans ISDg 5743094 YP_001558914.1 CDS Cphy_1806 NC_010001.1 2229469 2231334 D TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: cbf:CLI_1148 conserved repeat domain protein; hypothetical protein 2229469..2231334 Clostridium phytofermentans ISDg 5743095 YP_001558915.1 CDS Cphy_1807 NC_010001.1 2231766 2232170 D PFAM: Domain of unknown function DUF1801; KEGG: reu:Reut_B4111 hypothetical protein; hypothetical protein 2231766..2232170 Clostridium phytofermentans ISDg 5743096 YP_001558916.1 CDS Cphy_1808 NC_010001.1 2232772 2232987 D PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cac:CAC0669 hypothetical protein; BFD/(2Fe-2S)-binding domain-containing protein 2232772..2232987 Clostridium phytofermentans ISDg 5743097 YP_001558917.1 CDS Cphy_1809 NC_010001.1 2233626 2234207 D TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: tte:TTE1982 ribosomal protein L25 (general stress protein Ctc); ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 2233626..2234207 Clostridium phytofermentans ISDg 5743098 YP_001558918.1 CDS Cphy_1810 NC_010001.1 2234673 2236013 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbf:CLI_2014 MATE efflux family protein; MATE efflux family protein complement(2234673..2236013) Clostridium phytofermentans ISDg 5743099 YP_001558919.1 CDS Cphy_1811 NC_010001.1 2236246 2236704 D PFAM: regulatory protein AsnC/Lrp family; KEGG: bld:BLi03851 YwrC; AsnC family transcriptional regulator 2236246..2236704 Clostridium phytofermentans ISDg 5743100 YP_001558920.1 CDS hppA NC_010001.1 2237102 2239186 R pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase complement(2237102..2239186) Clostridium phytofermentans ISDg 5743101 YP_001558921.1 CDS Cphy_1813 NC_010001.1 2239524 2239865 D hypothetical protein 2239524..2239865 Clostridium phytofermentans ISDg 5743102 YP_001558922.1 CDS Cphy_1814 NC_010001.1 2240387 2241178 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mba:Mbar_A3478 hypothetical protein; methyltransferase type 12 2240387..2241178 Clostridium phytofermentans ISDg 5743103 YP_001558923.1 CDS Cphy_1815 NC_010001.1 2241716 2244034 D PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype; KEGG: cac:CAC3280 possible surface protein, responsible for cell interaction; contains cell adhesion domain and ChW-repeats; leucine-rich repeat-containing protein 2241716..2244034 Clostridium phytofermentans ISDg 5743104 YP_001558924.1 CDS Cphy_1816 NC_010001.1 2244708 2246063 D TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: Gluconate transporter; C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: efa:EF1920 C4-dicarboxylate anaerobic carrier; anaerobic C4-dicarboxylate transporter 2244708..2246063 Clostridium phytofermentans ISDg 5743105 YP_001558925.1 CDS Cphy_1817 NC_010001.1 2246159 2246575 D PFAM: GCN5-related N-acetyltransferase; KEGG: blo:BL1769 conserved hypothetical protein with acetyl transferase (GnaT) domain; N-acetyltransferase GCN5 2246159..2246575 Clostridium phytofermentans ISDg 5743106 YP_001558926.1 CDS Cphy_1818 NC_010001.1 2246773 2247699 D PFAM: PfkB domain protein; KEGG: pin:Ping_0344 ribokinase; ribokinase-like domain-containing protein 2246773..2247699 Clostridium phytofermentans ISDg 5743107 YP_001558927.1 CDS Cphy_1819 NC_010001.1 2247692 2248612 D catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 2247692..2248612 Clostridium phytofermentans ISDg 5743108 YP_001558928.1 CDS Cphy_1820 NC_010001.1 2248749 2250164 D TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: blo:BL1771 C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter 2248749..2250164 Clostridium phytofermentans ISDg 5743109 YP_001558929.1 CDS Cphy_1821 NC_010001.1 2250232 2251248 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0201 Transcriptional regulator; LacI family transcriptional regulator 2250232..2251248 Clostridium phytofermentans ISDg 5743110 YP_001558930.1 CDS Cphy_1822 NC_010001.1 2251694 2252137 D PFAM: GCN5-related N-acetyltransferase; KEGG: esa:ESA_02128 hypothetical protein; N-acetyltransferase GCN5 2251694..2252137 Clostridium phytofermentans ISDg 5743111 YP_001558931.1 CDS Cphy_1823 NC_010001.1 2252443 2255100 D TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor G domain IV; protein of unknown function DUF901; KEGG: cth:Cthe_0033 small GTP-binding protein; small GTP-binding protein 2252443..2255100 Clostridium phytofermentans ISDg 5743112 YP_001558932.1 CDS Cphy_1824 NC_010001.1 2255253 2255684 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: mta:Moth_1653 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 2255253..2255684 Clostridium phytofermentans ISDg 5743113 YP_001558933.1 CDS Cphy_1825 NC_010001.1 2255921 2256784 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: dsy:DSY2948 hypothetical protein; nitrite and sulfite reductase 4Fe-4S region 2255921..2256784 Clostridium phytofermentans ISDg 5743114 YP_001558934.1 CDS Cphy_1826 NC_010001.1 2256918 2257940 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: cbe:Cbei_4194 sulfate ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter, periplasmic sulfate-binding protein 2256918..2257940 Clostridium phytofermentans ISDg 5743115 YP_001558935.1 CDS Cphy_1827 NC_010001.1 2257959 2258801 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ckl:CKL_1802 CysT; sulfate ABC transporter, inner membrane subunit CysT 2257959..2258801 Clostridium phytofermentans ISDg 5743116 YP_001558936.1 CDS Cphy_1828 NC_010001.1 2258812 2259816 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbe:Cbei_4191 sulfate ABC transporter, inner membrane subunit CysW; sulfate ABC transporter permease 2258812..2259816 Clostridium phytofermentans ISDg 5743117 YP_001558937.1 CDS Cphy_1829 NC_010001.1 2260015 2261079 D KEGG: cbe:Cbei_4190 sulfate ABC transporter, ATPase subunit; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase 2260015..2261079 Clostridium phytofermentans ISDg 5743118 YP_001558938.1 CDS Cphy_1830 NC_010001.1 2261232 2262932 D catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; adenylylsulfate reductase subunit alpha 2261232..2262932 Clostridium phytofermentans ISDg 5743119 YP_001558939.1 CDS Cphy_1831 NC_010001.1 2262916 2263227 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cac:CAC0105 ferredoxin; 4Fe-4S ferredoxin 2262916..2263227 Clostridium phytofermentans ISDg 5743120 YP_001558940.1 CDS Cphy_1832 NC_010001.1 2263444 2264346 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 2263444..2264346 Clostridium phytofermentans ISDg 5743121 YP_001558941.1 CDS Cphy_1833 NC_010001.1 2264346 2266037 D KEGG: cbe:Cbei_4186 sulfate adenylyltransferase, large subunit; TIGRFAM: small GTP-binding protein; sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; sulfate adenylyltransferase, large subunit 2264346..2266037 Clostridium phytofermentans ISDg 5743122 YP_001558942.1 CDS Cphy_1834 NC_010001.1 2266336 2267001 R hypothetical protein complement(2266336..2267001) Clostridium phytofermentans ISDg 5743123 YP_001558943.1 CDS Cphy_1835 NC_010001.1 2267232 2268836 R KEGG: bha:BH1004 ABC-2 type transport system permease; ABC-2 type transport system permease complement(2267232..2268836) Clostridium phytofermentans ISDg 5743124 YP_001558944.1 CDS Cphy_1836 NC_010001.1 2268839 2269735 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1003 ABC transporter (ATP-binding protein); ABC transporter complement(2268839..2269735) Clostridium phytofermentans ISDg 5743125 YP_001558945.1 CDS Cphy_1837 NC_010001.1 2269861 2270469 R PFAM: regulatory protein TetR; KEGG: ckl:CKL_3748 transcriptional regulator; TetR family transcriptional regulator complement(2269861..2270469) Clostridium phytofermentans ISDg 5743126 YP_001558946.1 CDS Cphy_1838 NC_010001.1 2271003 2271590 D PFAM: regulatory protein TetR; KEGG: cbf:CLI_1106 transcriptional regulator, TetR family; TetR family transcriptional regulator 2271003..2271590 Clostridium phytofermentans ISDg 5743127 YP_001558947.1 CDS Cphy_1839 NC_010001.1 2271583 2271999 D KEGG: mst:Msp_0843 hypothetical protein; hypothetical protein 2271583..2271999 Clostridium phytofermentans ISDg 5743128 YP_001558948.1 CDS Cphy_1840 NC_010001.1 2272021 2272560 D KEGG: cpf:CPF_1044 hypothetical protein; multimeric flavodoxin WrbA-like protein 2272021..2272560 Clostridium phytofermentans ISDg 5743129 YP_001558949.1 CDS Cphy_1841 NC_010001.1 2272557 2273213 D KEGG: cac:CAC0755 multimeric flavodoxin WrbA family protein, diverged or disrupted; hypothetical protein 2272557..2273213 Clostridium phytofermentans ISDg 5743130 YP_001558950.1 CDS Cphy_1842 NC_010001.1 2273514 2274101 D PFAM: GCN5-related N-acetyltransferase; KEGG: cmi:CMM_0312 acetyltransferase; N-acetyltransferase GCN5 2273514..2274101 Clostridium phytofermentans ISDg 5743131 YP_001558951.1 CDS Cphy_1843 NC_010001.1 2274130 2274657 D PFAM: protein of unknown function DUF402; KEGG: oih:OB0349 hypothetical protein; hypothetical protein 2274130..2274657 Clostridium phytofermentans ISDg 5743132 YP_001558952.1 CDS Cphy_1844 NC_010001.1 2274803 2275228 D PFAM: regulatory protein MarR; KEGG: bcz:pE33L466_0362 transcriptional regulator, MarR family; MarR family transcriptional regulator 2274803..2275228 Clostridium phytofermentans ISDg 5743133 YP_001558953.1 CDS Cphy_1845 NC_010001.1 2275424 2276128 D PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3058 pirin domain protein; pirin 2275424..2276128 Clostridium phytofermentans ISDg 5743134 YP_001558954.1 CDS Cphy_1846 NC_010001.1 2276444 2276983 R KEGG: cpr:CPR_0953 hypothetical protein; hypothetical protein complement(2276444..2276983) Clostridium phytofermentans ISDg 5743135 YP_001558955.1 CDS Cphy_1847 NC_010001.1 2277137 2277997 D PFAM: polysaccharide deacetylase; KEGG: cdf:CD1430 exported polysaccharide deacetylase; polysaccharide deacetylase 2277137..2277997 Clostridium phytofermentans ISDg 5743136 YP_001558956.1 CDS Cphy_1848 NC_010001.1 2278216 2278464 D KEGG: cbf:CLI_2295 transcriptional regulator, MerR family; MerR family transcriptional regulator 2278216..2278464 Clostridium phytofermentans ISDg 5743137 YP_001558957.1 CDS Cphy_1849 NC_010001.1 2278630 2278938 D KEGG: cpf:CPF_1053 DNA-binding protein; hypothetical protein 2278630..2278938 Clostridium phytofermentans ISDg 5743138 YP_001558958.1 CDS Cphy_1850 NC_010001.1 2279006 2279350 D PFAM: helix-turn-helix HxlR type; KEGG: cpr:CPR_0720 cinnamoyl ester hydrolase; HxlR family transcriptional regulator 2279006..2279350 Clostridium phytofermentans ISDg 5743139 YP_001558959.1 CDS Cphy_1851 NC_010001.1 2279608 2280837 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; cytochrome c biogenesis protein transmembrane region; Redoxin domain protein; Thioredoxin domain; KEGG: cpr:CPR_0721 cytochrome c biogenesis protein transmembrane region family; cytochrome c biogenesis protein transmembrane region 2279608..2280837 Clostridium phytofermentans ISDg 5743140 YP_001558960.1 CDS Cphy_1852 NC_010001.1 2281237 2281617 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cdf:CD3610 glyoxalase; glyoxalase/bleomycin resistance protein/dioxygenase 2281237..2281617 Clostridium phytofermentans ISDg 5743141 YP_001558961.1 CDS Cphy_1853 NC_010001.1 2281811 2282233 R KEGG: cth:Cthe_1547 hypothetical protein; hypothetical protein complement(2281811..2282233) Clostridium phytofermentans ISDg 5743142 YP_001558962.1 CDS Cphy_1854 NC_010001.1 2282230 2282910 R KEGG: ctc:CTC02470 hypothetical protein; hypothetical protein complement(2282230..2282910) Clostridium phytofermentans ISDg 5743143 YP_001558963.1 CDS Cphy_1855 NC_010001.1 2282934 2283368 R KEGG: cpf:CPF_1105 hypothetical protein; hypothetical protein complement(2282934..2283368) Clostridium phytofermentans ISDg 5743144 YP_001558964.1 CDS Cphy_1856 NC_010001.1 2283424 2283981 R PFAM: regulatory protein TetR; KEGG: ctc:CTC02471 transcription regulator; TetR family transcriptional regulator complement(2283424..2283981) Clostridium phytofermentans ISDg 5743145 YP_001558965.1 CDS Cphy_1857 NC_010001.1 2284398 2287055 R PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: blo:BL1369 large protein with N-terminal similarity to ATP binding protein of ABC transporter; ABC transporter complement(2284398..2287055) Clostridium phytofermentans ISDg 5743146 YP_001558966.1 CDS Cphy_1858 NC_010001.1 2287562 2288530 D KEGG: dsy:DSY0552 hypothetical protein; hypothetical protein 2287562..2288530 Clostridium phytofermentans ISDg 5743147 YP_001558967.1 CDS Cphy_1859 NC_010001.1 2288545 2288772 D KEGG: dsy:DSY0553 hypothetical protein; XRE family transcriptional regulator 2288545..2288772 Clostridium phytofermentans ISDg 5743148 YP_001558968.1 CDS Cphy_1860 NC_010001.1 2288762 2289757 D KEGG: dsy:DSY0554 hypothetical protein; hypothetical protein 2288762..2289757 Clostridium phytofermentans ISDg 5743149 YP_001558969.1 CDS Cphy_1861 NC_010001.1 2290142 2290819 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amt:Amet_1917 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2290142..2290819 Clostridium phytofermentans ISDg 5743150 YP_001558970.1 CDS Cphy_1862 NC_010001.1 2290812 2291861 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: amt:Amet_1918 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2290812..2291861 Clostridium phytofermentans ISDg 5743151 YP_001558971.1 CDS Cphy_1863 NC_010001.1 2292105 2292530 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ckl:CKL_2305 hypothetical protein; CDP-alcohol phosphatidyltransferase 2292105..2292530 Clostridium phytofermentans ISDg 5743152 YP_001558972.1 CDS Cphy_1864 NC_010001.1 2293073 2293687 D PFAM: regulatory protein TetR; KEGG: cbe:Cbei_4692 transcriptional regulator, TetR family; TetR family transcriptional regulator 2293073..2293687 Clostridium phytofermentans ISDg 5743153 YP_001558973.1 CDS Cphy_1865 NC_010001.1 2293691 2294365 D PFAM: NADPH-dependent FMN reductase; KEGG: mla:Mlab_1736 hypothetical protein; NADPH-dependent FMN reductase 2293691..2294365 Clostridium phytofermentans ISDg 5743154 YP_001558974.1 CDS Cphy_1866 NC_010001.1 2294555 2295754 D KEGG: rci:RCIX1074 hypothetical protein; hypothetical protein 2294555..2295754 Clostridium phytofermentans ISDg 5743155 YP_001558975.1 CDS Cphy_1867 NC_010001.1 2295917 2297356 D hypothetical protein 2295917..2297356 Clostridium phytofermentans ISDg 5743156 YP_001558976.1 CDS Cphy_1868 NC_010001.1 2297567 2299213 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: cbf:CLI_0245 pyridine nucleotide-disulphide oxidoreductase family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase complement(2297567..2299213) Clostridium phytofermentans ISDg 5743157 YP_001558977.1 CDS Cphy_1869 NC_010001.1 2299236 2299589 R PFAM: Rhodanese domain protein; KEGG: cbf:CLI_1221 phage shock protein; rhodanese domain-containing protein complement(2299236..2299589) Clostridium phytofermentans ISDg 5743158 YP_001558978.1 CDS Cphy_1870 NC_010001.1 2300033 2300503 D KEGG: dsy:DSY4364 hypothetical protein; hypothetical protein 2300033..2300503 Clostridium phytofermentans ISDg 5743159 YP_001558979.1 CDS Cphy_1871 NC_010001.1 2300628 2301188 D PFAM: metallophosphoesterase; KEGG: sme:SMb20398 hypothetical protein; metallophosphoesterase 2300628..2301188 Clostridium phytofermentans ISDg 5743160 YP_001558980.1 CDS Cphy_1872 NC_010001.1 2301347 2302306 D KEGG: btk:BT9727_0548 hypothetical protein; homoserine kinase type II (protein kinase fold)-like protein 2301347..2302306 Clostridium phytofermentans ISDg 5743161 YP_001558981.1 CDS Cphy_1873 NC_010001.1 2302530 2305805 D PFAM: Carbohydrate binding family 6; APHP domain protein; SMART: cellulose binding type IV; Parallel beta-helix repeat; KEGG: sco:SCO7037 secreted protein; carbohydrate-binding family 6 protein 2302530..2305805 Clostridium phytofermentans ISDg 5743162 YP_001558982.1 CDS Cphy_1874 NC_010001.1 2305913 2308174 D PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: tte:TTE0798 Trehalose and maltose hydrolases (possible phosphorylases); Kojibiose phosphorylase 2305913..2308174 Clostridium phytofermentans ISDg 5743163 YP_001558983.1 CDS Cphy_1875 NC_010001.1 2308280 2308927 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cac:CAC2614 beta-phosphoglucomutase; beta-phosphoglucomutase 2308280..2308927 Clostridium phytofermentans ISDg 5744554 YP_001558984.1 CDS Cphy_1876 NC_010001.1 2309264 2310301 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cbe:Cbei_1439 regulatory protein, LacI; LacI family transcriptional regulator 2309264..2310301 Clostridium phytofermentans ISDg 5744555 YP_001558985.1 CDS Cphy_1877 NC_010001.1 2310355 2312748 D PFAM: glycoside hydrolase family 31; KEGG: bad:BAD_1599 alpha-xylosidase; glycoside hydrolase family protein 2310355..2312748 Clostridium phytofermentans ISDg 5744556 YP_001558986.1 CDS Cphy_1878 NC_010001.1 2312810 2314963 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: csc:Csac_2452 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2312810..2314963 Clostridium phytofermentans ISDg 5744557 YP_001558987.1 CDS Cphy_1879 NC_010001.1 2315244 2316557 D PFAM: extracellular solute-binding protein family 1; KEGG: cdi:DIP0534 sugar-binding secreted protein; extracellular solute-binding protein 2315244..2316557 Clostridium phytofermentans ISDg 5744558 YP_001558988.1 CDS Cphy_1880 NC_010001.1 2316885 2318273 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF1344 sugar ABC transporter, permease; fructose-bisphosphate aldolase 2316885..2318273 Clostridium phytofermentans ISDg 5744559 YP_001558989.1 CDS Cphy_1881 NC_010001.1 2318273 2319553 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF1343 sugar ABC transporter, permease; binding-protein-dependent transport system inner membrane protein 2318273..2319553 Clostridium phytofermentans ISDg 5744560 YP_001558990.1 CDS Cphy_1882 NC_010001.1 2319649 2323881 D SMART: Parallel beta-helix repeat; KEGG: sco:SCO7037 secreted protein; parallel beta-helix repeat-containing protein 2319649..2323881 Clostridium phytofermentans ISDg 5744561 YP_001558991.1 CDS Cphy_1883 NC_010001.1 2324145 2325200 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: asu:Asuc_1193 periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator 2324145..2325200 Clostridium phytofermentans ISDg 5744562 YP_001558992.1 CDS Cphy_1884 NC_010001.1 2325318 2326274 D PFAM: dihydrouridine synthase DuS; KEGG: cno:NT01CX_1427 probable transcriptional regulator; dihydrouridine synthase DuS 2325318..2326274 Clostridium phytofermentans ISDg 5744563 YP_001558993.1 CDS Cphy_1885 NC_010001.1 2326384 2326995 D KEGG: cac:CAC1508 hypothetical protein; hypothetical protein 2326384..2326995 Clostridium phytofermentans ISDg 5744564 YP_001558994.1 CDS Cphy_1886 NC_010001.1 2327638 2329545 D PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: gtn:GTNG_3106 cell wall lytic activity; peptidoglycan binding domain-containing protein 2327638..2329545 Clostridium phytofermentans ISDg 5744565 YP_001558995.1 CDS Cphy_1887 NC_010001.1 2329767 2332379 D KEGG: shn:Shewana3_1825 ATPase-like protein; hypothetical protein 2329767..2332379 Clostridium phytofermentans ISDg 5744566 YP_001558996.1 CDS Cphy_1888 NC_010001.1 2332943 2334793 D KEGG: cth:Cthe_2179 pectate lyase/Amb allergen; hypothetical protein 2332943..2334793 Clostridium phytofermentans ISDg 5744567 YP_001558997.1 CDS Cphy_1889 NC_010001.1 2335316 2336311 R PFAM: Ig domain protein group 2 domain protein; KEGG: chu:CHU_1335 CHU large protein; endoglucanase-related protein, glucosyl hydrolase family 9 protein; Ig domain-containing protein complement(2335316..2336311) Clostridium phytofermentans ISDg 5744568 YP_001558998.1 CDS Cphy_1890 NC_010001.1 2336694 2337233 D hypothetical protein 2336694..2337233 Clostridium phytofermentans ISDg 5744569 YP_001558999.1 CDS Cphy_1891 NC_010001.1 2337238 2338230 D PFAM: PT repeat-containing protein; KEGG: pfa:PFF0385c hypothetical protein; PT repeat-containing protein 2337238..2338230 Clostridium phytofermentans ISDg 5744570 YP_001559000.1 CDS Cphy_1892 NC_010001.1 2338471 2339646 D PFAM: Monogalactosyldiacylglycerol synthase; KEGG: cpf:CPF_0710 monogalactosyldiacylglycerol synthase; monogalactosyldiacylglycerol synthase 2338471..2339646 Clostridium phytofermentans ISDg 5744571 YP_001559001.1 CDS Cphy_1893 NC_010001.1 2339627 2340271 D PFAM: protein of unknown function DUF205; KEGG: fnu:FN0537 hypothetical membrane-spanning protein; hypothetical protein 2339627..2340271 Clostridium phytofermentans ISDg 5744572 YP_001559002.1 CDS Cphy_1894 NC_010001.1 2340490 2341062 D PFAM: cyclase family protein; KEGG: gur:Gura_0174 cyclase family protein; cyclase family protein 2340490..2341062 Clostridium phytofermentans ISDg 5744573 YP_001559003.1 CDS Cphy_1895 NC_010001.1 2341078 2341467 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cbe:Cbei_0463 hemerythrin-like metal-binding protein; hemerythrin-like metal-binding protein 2341078..2341467 Clostridium phytofermentans ISDg 5744574 YP_001559004.1 CDS Cphy_1896 NC_010001.1 2342291 2342512 D KEGG: mhu:Mhun_2065 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2342291..2342512 Clostridium phytofermentans ISDg 5744575 YP_001559005.1 CDS Cphy_1897 NC_010001.1 2342552 2342944 D hypothetical protein 2342552..2342944 Clostridium phytofermentans ISDg 5744576 YP_001559006.1 CDS Cphy_1898 NC_010001.1 2342968 2343189 D hypothetical protein 2342968..2343189 Clostridium phytofermentans ISDg 5744577 YP_001559007.1 CDS Cphy_1899 NC_010001.1 2343248 2344012 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cdf:CD3121 flavodoxin; 4Fe-4S ferredoxin 2343248..2344012 Clostridium phytofermentans ISDg 5744578 YP_001559008.1 CDS Cphy_1900 NC_010001.1 2344104 2344670 R PFAM: Phosphoglycerate mutase; KEGG: amt:Amet_2630 phosphoglycerate mutase; phosphoglycerate mutase complement(2344104..2344670) Clostridium phytofermentans ISDg 5744579 YP_001559009.1 CDS Cphy_1901 NC_010001.1 2345177 2345689 D PFAM: GCN5-related N-acetyltransferase; KEGG: cbe:Cbei_3065 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2345177..2345689 Clostridium phytofermentans ISDg 5744580 YP_001559010.1 CDS Cphy_1902 NC_010001.1 2345729 2346607 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ckl:CKL_2381 predicted transcriptional regulator; LysR family transcriptional regulator 2345729..2346607 Clostridium phytofermentans ISDg 5744581 YP_001559011.1 CDS Cphy_1903 NC_010001.1 2346604 2347164 R PFAM: Chromate transporter; KEGG: bth:BT_1736 chromate transport protein; chromate transporter complement(2346604..2347164) Clostridium phytofermentans ISDg 5744582 YP_001559012.1 CDS Cphy_1904 NC_010001.1 2347161 2347772 R PFAM: Chromate transporter; KEGG: ctc:CTC00660 chromate transport protein; chromate transporter complement(2347161..2347772) Clostridium phytofermentans ISDg 5744583 YP_001559013.1 CDS Cphy_1905 NC_010001.1 2348023 2348664 D PFAM: protein of unknown function DUF1121; KEGG: ckl:CKL_1828 hypothetical protein; hypothetical protein 2348023..2348664 Clostridium phytofermentans ISDg 5744584 YP_001559014.1 CDS Cphy_1906 NC_010001.1 2348856 2349776 D PFAM: Domain of unknown function DUF1848; KEGG: bth:BT_1910 hypothetical protein; hypothetical protein 2348856..2349776 Clostridium phytofermentans ISDg 5744585 YP_001559015.1 CDS Cphy_1907 NC_010001.1 2350016 2351425 D PFAM: major facilitator superfamily MFS_1; KEGG: csc:Csac_2119 major facilitator superfamily MFS_1; major facilitator transporter 2350016..2351425 Clostridium phytofermentans ISDg 5744586 YP_001559016.1 CDS Cphy_1908 NC_010001.1 2351801 2353729 R KEGG: cth:Cthe_1481 membrane protein-like protein; membrane protein-like protein complement(2351801..2353729) Clostridium phytofermentans ISDg 5744587 YP_001559017.1 CDS Cphy_1909 NC_010001.1 2353743 2355821 R KEGG: cth:Cthe_1480 hypothetical protein; hypothetical protein complement(2353743..2355821) Clostridium phytofermentans ISDg 5744588 YP_001559018.1 CDS Cphy_1910 NC_010001.1 2356046 2356669 D PFAM: regulatory protein TetR; KEGG: cbh:CLC_3223 transcriptional regulator, TetR family; TetR family transcriptional regulator 2356046..2356669 Clostridium phytofermentans ISDg 5744589 YP_001559019.1 CDS Cphy_1911 NC_010001.1 2356960 2358816 D KEGG: mvn:Mevan_0087 superfamily I DNA and RNA helicase and helicase subunits-like protein; hypothetical protein 2356960..2358816 Clostridium phytofermentans ISDg 5744590 YP_001559020.1 CDS Cphy_1912 NC_010001.1 2358995 2360608 D TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gur:Gura_1785 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 2358995..2360608 Clostridium phytofermentans ISDg 5744591 YP_001559021.1 CDS Cphy_1913 NC_010001.1 2360855 2361139 D hypothetical protein 2360855..2361139 Clostridium phytofermentans ISDg 5744592 YP_001559022.1 CDS Cphy_1914 NC_010001.1 2361132 2362028 D hypothetical protein 2361132..2362028 Clostridium phytofermentans ISDg 5744593 YP_001559023.1 CDS Cphy_1915 NC_010001.1 2362169 2364496 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: csc:Csac_2727 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 2362169..2364496 Clostridium phytofermentans ISDg 5744594 YP_001559024.1 CDS Cphy_1916 NC_010001.1 2364818 2365780 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi03166 membrane protein; RBL03398; binding-protein-dependent transport system inner membrane protein 2364818..2365780 Clostridium phytofermentans ISDg 5744595 YP_001559025.1 CDS Cphy_1917 NC_010001.1 2365793 2366710 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BG11788 multiple sugar transport system permease; binding-protein-dependent transport systems inner membrane component 2365793..2366710 Clostridium phytofermentans ISDg 5744596 YP_001559026.1 CDS Cphy_1918 NC_010001.1 2366768 2368441 D PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH0482 lipoprotein; extracellular solute-binding protein 2366768..2368441 Clostridium phytofermentans ISDg 5744597 YP_001559027.1 CDS Cphy_1919 NC_010001.1 2369079 2370116 D PFAM: glycosyl hydrolase family 88; KEGG: bsu:BG12852 similar to hypothetical proteins; glycosyl hydrolase family protein 2369079..2370116 Clostridium phytofermentans ISDg 5744598 YP_001559028.1 CDS Cphy_1920 NC_010001.1 2370232 2372400 D PFAM: conserved hypothetical protein; KEGG: cpr:CPR_0537 conserved hypothetical protein TIGR02336; hypothetical protein 2370232..2372400 Clostridium phytofermentans ISDg 5744599 YP_001559029.1 CDS Cphy_1921 NC_010001.1 2372501 2372746 D hypothetical protein 2372501..2372746 Clostridium phytofermentans ISDg 5744600 YP_001559030.1 CDS Cphy_1922 NC_010001.1 2373128 2374690 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1451 ABC transporter related; ABC transporter 2373128..2374690 Clostridium phytofermentans ISDg 5744601 YP_001559031.1 CDS Cphy_1923 NC_010001.1 2375371 2376411 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pdi:BDI_1057 dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 2375371..2376411 Clostridium phytofermentans ISDg 5744602 YP_001559032.1 CDS Cphy_1924 NC_010001.1 2376426 2376812 D PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin); desulfoferrodoxin ferrous iron-binding region 2376426..2376812 Clostridium phytofermentans ISDg 5744603 YP_001559033.1 CDS Cphy_1925 NC_010001.1 2377225 2378367 R KEGG: lca:LSEI_1862 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; sodium ion-translocating decarboxylase subunit beta complement(2377225..2378367) Clostridium phytofermentans ISDg 5744604 YP_001559034.1 CDS Cphy_1927 NC_010001.1 2379565 2380857 D PFAM: cation transporter; KEGG: cpf:CPF_2143 potassium uptake protein, TrkH family; H(+)-transporting two-sector ATPase 2379565..2380857 Clostridium phytofermentans ISDg 5744606 YP_001559035.1 CDS Cphy_1928 NC_010001.1 2380934 2381605 D PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: chy:CHY_1574 potassium uptake protein KtrA; TrkA domain-containing protein 2380934..2381605 Clostridium phytofermentans ISDg 5744607 YP_001559036.1 CDS Cphy_1929 NC_010001.1 2382327 2384720 R PFAM: carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: csc:Csac_1090 glycosyltransferase 36; glycosyltransferase complement(2382327..2384720) Clostridium phytofermentans ISDg 5744608 YP_001559037.1 CDS Cphy_1930 NC_010001.1 2385034 2385786 D TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: amt:Amet_4016 toxin secretion/phage lysis holin; toxin secretion/phage lysis holin 2385034..2385786 Clostridium phytofermentans ISDg 5744609 YP_001559038.1 CDS Cphy_1931 NC_010001.1 2385890 2387113 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(2385890..2387113) Clostridium phytofermentans ISDg 5744610 YP_001559039.1 CDS Cphy_1932 NC_010001.1 2387374 2388042 D KEGG: ckl:CKL_2512 predicted phosphatase; phosphatase 2387374..2388042 Clostridium phytofermentans ISDg 5744611 YP_001559040.1 CDS Cphy_1933 NC_010001.1 2388158 2388751 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: bce:BC4462 septum formation protein Maf; maf protein 2388158..2388751 Clostridium phytofermentans ISDg 5744612 YP_001559041.1 CDS Cphy_1934 NC_010001.1 2388859 2390790 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: csc:Csac_2428 alpha amylase, catalytic region; alpha amylase complement(2388859..2390790) Clostridium phytofermentans ISDg 5744613 YP_001559042.1 CDS Cphy_1935 NC_010001.1 2390872 2392257 R TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: tde:TDE1454 sugar transporter; sugar (glycoside-Pentoside-hexuronide) transporter complement(2390872..2392257) Clostridium phytofermentans ISDg 5744614 YP_001559043.1 CDS Cphy_1936 NC_010001.1 2392257 2394713 R PFAM: glycoside hydrolase clan GH-D; KEGG: tde:TDE1453 alpha-galactosidase; glycoside hydrolase clan GH-D complement(2392257..2394713) Clostridium phytofermentans ISDg 5744615 YP_001559044.1 CDS Cphy_1937 NC_010001.1 2394710 2395993 R PFAM: glycoside hydrolase family 1; KEGG: tde:TDE1882 glycosyl hydrolase, family 1; glycoside hydrolase family protein complement(2394710..2395993) Clostridium phytofermentans ISDg 5744616 YP_001559045.1 CDS Cphy_1938 NC_010001.1 2396275 2396475 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sae:NWMN_2605 cold shock protein CspB; cold-shock DNA-binding domain-containing protein complement(2396275..2396475) Clostridium phytofermentans ISDg 5744617 YP_001559046.1 CDS Cphy_1939 NC_010001.1 2397078 2397308 D hypothetical protein 2397078..2397308 Clostridium phytofermentans ISDg 5744618 YP_001559047.1 CDS Cphy_1940 NC_010001.1 2397716 2398444 D PFAM: SCP-like extracellular; KEGG: cdf:CD2681 calcium-chelating exported protein; SCP-like extracellular 2397716..2398444 Clostridium phytofermentans ISDg 5744619 YP_001559048.1 CDS Cphy_1941 NC_010001.1 2398748 2399455 D PFAM: phospholipid/glycerol acyltransferase; KEGG: cbe:Cbei_0579 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2398748..2399455 Clostridium phytofermentans ISDg 5744620 YP_001559049.1 CDS Cphy_1942 NC_010001.1 2399570 2399968 D KEGG: dsy:DSY4335 hypothetical protein; hypothetical protein 2399570..2399968 Clostridium phytofermentans ISDg 5744621 YP_001559050.1 CDS Cphy_1943 NC_010001.1 2400010 2401404 R PFAM: glycoside hydrolase family 19; KEGG: ath:AT1G02360 chitinase; chitinase complement(2400010..2401404) Clostridium phytofermentans ISDg 5744622 YP_001559051.1 CDS Cphy_1944 NC_010001.1 2402148 2402717 R KEGG: cbe:Cbei_4715 hypothetical protein; hypothetical protein complement(2402148..2402717) Clostridium phytofermentans ISDg 5744623 YP_001559052.1 CDS Cphy_1945 NC_010001.1 2402848 2403159 D hypothetical protein 2402848..2403159 Clostridium phytofermentans ISDg 5744624 YP_001559053.1 CDS Cphy_1946 NC_010001.1 2403312 2403665 D hypothetical protein 2403312..2403665 Clostridium phytofermentans ISDg 5744625 YP_001559054.1 CDS Cphy_1947 NC_010001.1 2403747 2404271 R hypothetical protein complement(2403747..2404271) Clostridium phytofermentans ISDg 5744626 YP_001559055.1 CDS argC NC_010001.1 2404814 2405854 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 2404814..2405854 Clostridium phytofermentans ISDg 5744627 YP_001559056.1 CDS Cphy_1949 NC_010001.1 2406002 2407222 D KEGG: tpt:Tpet_1070 arginine biosynthesis bifunctional protein ArgJ; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; arginine biosynthesis bifunctional protein ArgJ 2406002..2407222 Clostridium phytofermentans ISDg 5744628 YP_001559057.1 CDS Cphy_1950 NC_010001.1 2407322 2408224 D KEGG: cje:Cj0226 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; acetylglutamate kinase 2407322..2408224 Clostridium phytofermentans ISDg 5744629 YP_001559058.1 CDS Cphy_1951 NC_010001.1 2408227 2409423 D TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: cju:C8J_0205 acetylornithine aminotransferase; acetylornithine and succinylornithine aminotransferase 2408227..2409423 Clostridium phytofermentans ISDg 5744630 YP_001559059.1 CDS Cphy_1952 NC_010001.1 2409783 2410220 D PFAM: protein of unknown function DUF606; KEGG: cbe:Cbei_5065 protein of unknown function DUF606; hypothetical protein 2409783..2410220 Clostridium phytofermentans ISDg 5744631 YP_001559060.1 CDS Cphy_1953 NC_010001.1 2410384 2411100 D KEGG: csc:Csac_1821 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; helix-hairpin-helix repeat-containing competence protein ComEA 2410384..2411100 Clostridium phytofermentans ISDg 5744632 YP_001559061.1 CDS Cphy_1954 NC_010001.1 2411187 2411876 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amt:Amet_2325 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2411187..2411876 Clostridium phytofermentans ISDg 5744633 YP_001559062.1 CDS Cphy_1955 NC_010001.1 2411833 2413287 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: amt:Amet_2326 histidine kinase; integral membrane sensor signal transduction histidine kinase 2411833..2413287 Clostridium phytofermentans ISDg 5744634 YP_001559063.1 CDS Cphy_1956 NC_010001.1 2413339 2414268 D KEGG: cth:Cthe_2543 spore germination protein-like protein; hypothetical protein 2413339..2414268 Clostridium phytofermentans ISDg 5744635 YP_001559064.1 CDS Cphy_1957 NC_010001.1 2414887 2417577 D TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; KEGG: bce:BC4322 ComE operon protein 3; DNA internalization-related competence protein ComEC/Rec2 2414887..2417577 Clostridium phytofermentans ISDg 5744636 YP_001559065.1 CDS Cphy_1958 NC_010001.1 2418081 2419013 D PFAM: Mg2 transporter protein CorA family protein; KEGG: tde:TDE1034 magnesium and cobalt transporter; Mg2 transporter protein CorA family protein 2418081..2419013 Clostridium phytofermentans ISDg 5744637 YP_001559066.1 CDS Cphy_1959 NC_010001.1 2419168 2420232 D PFAM: conserved hypothetical protein; KEGG: cdf:CD2723 hypothetical protein; hypothetical protein 2419168..2420232 Clostridium phytofermentans ISDg 5744638 YP_001559067.1 CDS Cphy_1960 NC_010001.1 2420216 2420839 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cac:CAC0798 phosphatidylserine synthase; CDP-alcohol phosphatidyltransferase 2420216..2420839 Clostridium phytofermentans ISDg 5744639 YP_001559068.1 CDS Cphy_1961 NC_010001.1 2421004 2421870 D PFAM: phosphatidylserine decarboxylase-related; KEGG: cac:CAC0799 phosphatidylserine decarboxylase; phosphatidylserine decarboxylase 2421004..2421870 Clostridium phytofermentans ISDg 5744640 YP_001559069.1 CDS Cphy_1962 NC_010001.1 2421915 2422892 D TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: cth:Cthe_1040 DNA polymerase III, delta subunit; DNA polymerase III subunit delta 2421915..2422892 Clostridium phytofermentans ISDg 5744641 YP_001559070.1 CDS Cphy_1963 NC_010001.1 2423286 2423597 D PFAM: transcriptional regulator PadR family protein; KEGG: gtn:GTNG_0307 predicted transcriptional regulator; PadR-like family transcriptional regulator 2423286..2423597 Clostridium phytofermentans ISDg 5744642 YP_001559071.1 CDS Cphy_1964 NC_010001.1 2423677 2424645 D hypothetical protein 2423677..2424645 Clostridium phytofermentans ISDg 5744643 YP_001559072.1 CDS Cphy_1965 NC_010001.1 2424758 2426128 D KEGG: tde:TDE1859 hypothetical protein; hypothetical protein 2424758..2426128 Clostridium phytofermentans ISDg 5744644 YP_001559073.1 CDS Cphy_1966 NC_010001.1 2426619 2427266 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mac:MA1248 UbiE/COQ5 methyltransferase; methyltransferase type 11 complement(2426619..2427266) Clostridium phytofermentans ISDg 5744645 YP_001559074.1 CDS Cphy_1967 NC_010001.1 2427815 2428621 D PFAM: helix-turn-helix domain protein; KEGG: dsy:DSY1949 hypothetical protein; XRE family transcriptional regulator 2427815..2428621 Clostridium phytofermentans ISDg 5744647 YP_001559075.1 CDS Cphy_1968 NC_010001.1 2429017 2430558 D PFAM: von Willebrand factor type A; KEGG: bra:BRADO1313 hypothetical protein; signal peptide; von Willebrand factor type A 2429017..2430558 Clostridium phytofermentans ISDg 5744648 YP_001559076.1 CDS Cphy_1969 NC_010001.1 2430571 2431221 D KEGG: cdf:CD2337 hypothetical protein; hypothetical protein 2430571..2431221 Clostridium phytofermentans ISDg 5744649 YP_001559077.1 CDS Cphy_1970 NC_010001.1 2431218 2432318 D KEGG: bra:BRADO1315 hypothetical protein; signal peptide; hypothetical protein 2431218..2432318 Clostridium phytofermentans ISDg 5744650 YP_001559078.1 CDS Cphy_1971 NC_010001.1 2432490 2433596 D PFAM: toxic anion resistance family protein; KEGG: cbe:Cbei_0754 toxic anion resistance family protein; toxic anion resistance family protein 2432490..2433596 Clostridium phytofermentans ISDg 5744651 YP_001559079.1 CDS Cphy_1972 NC_010001.1 2433740 2434666 R PFAM: protein of unknown function DUF362; KEGG: drm:Dred_1308 protein of unknown function DUF362; hypothetical protein complement(2433740..2434666) Clostridium phytofermentans ISDg 5744652 YP_001559080.1 CDS Cphy_1973 NC_010001.1 2434856 2435425 D PFAM: ThiJ/PfpI domain protein; KEGG: cbe:Cbei_3829 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 2434856..2435425 Clostridium phytofermentans ISDg 5744653 YP_001559081.1 CDS Cphy_1974 NC_010001.1 2435446 2435997 D PFAM: nitroreductase; KEGG: cbe:Cbei_3418 nitroreductase; nitroreductase 2435446..2435997 Clostridium phytofermentans ISDg 5744654 YP_001559082.1 CDS Cphy_1975 NC_010001.1 2436461 2438653 D PFAM: Ig domain protein group 2 domain protein; KEGG: tva:TVAG_154640 surface antigen BspA-like Pfam: FNIP Pentapeptide_2 PROSITE: SER_RICH; Ig domain-containing protein 2436461..2438653 Clostridium phytofermentans ISDg 5744655 YP_001559083.1 CDS Cphy_1976 NC_010001.1 2438851 2440587 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: amt:Amet_0582 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2438851..2440587) Clostridium phytofermentans ISDg 5744656 YP_001559084.1 CDS Cphy_1977 NC_010001.1 2441154 2441819 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbf:CLI_1432 ABC transporter, ATP-binding protein; ABC transporter complement(2441154..2441819) Clostridium phytofermentans ISDg 5744657 YP_001559085.1 CDS Cphy_1978 NC_010001.1 2441824 2443179 R PFAM: protein of unknown function DUF214; KEGG: cbf:CLI_1431 ABC transporter, permease; hypothetical protein complement(2441824..2443179) Clostridium phytofermentans ISDg 5744658 YP_001559086.1 CDS Cphy_1979 NC_010001.1 2443730 2444152 R PFAM: regulatory protein MarR; KEGG: cbf:CLI_2873 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(2443730..2444152) Clostridium phytofermentans ISDg 5744659 YP_001559087.1 CDS Cphy_1980 NC_010001.1 2444163 2446424 R PFAM: ABC transporter related; KEGG: cac:CAC1464 UvrA-like protein, probably involved in MDR transport; ABC transporter complement(2444163..2446424) Clostridium phytofermentans ISDg 5744660 YP_001559088.1 CDS Cphy_1981 NC_010001.1 2447051 2447947 D PFAM: 5-nucleotidase; KEGG: har:HEAR0649 5'-nucleotidase; 5'-nucleotidase 2447051..2447947 Clostridium phytofermentans ISDg 5744661 YP_001559089.1 CDS Cphy_1982 NC_010001.1 2448335 2449126 D KEGG: cbh:CLC_2688 hypothetical protein; hypothetical protein 2448335..2449126 Clostridium phytofermentans ISDg 5744662 YP_001559090.1 CDS Cphy_1983 NC_010001.1 2449368 2450339 D KEGG: cbf:CLI_1052 hypothetical protein; hypothetical protein 2449368..2450339 Clostridium phytofermentans ISDg 5744663 YP_001559091.1 CDS Cphy_1984 NC_010001.1 2450413 2451300 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_1022 ABC transporter, ATP-binding protein; ABC transporter 2450413..2451300 Clostridium phytofermentans ISDg 5744664 YP_001559092.1 CDS Cphy_1985 NC_010001.1 2451303 2452067 D KEGG: cbh:CLC_1023 hypothetical protein; hypothetical protein 2451303..2452067 Clostridium phytofermentans ISDg 5744665 YP_001559093.1 CDS Cphy_1986 NC_010001.1 2452455 2453177 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amt:Amet_1691 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2452455..2453177 Clostridium phytofermentans ISDg 5744666 YP_001559094.1 CDS Cphy_1987 NC_010001.1 2453174 2454580 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: amt:Amet_1692 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2453174..2454580 Clostridium phytofermentans ISDg 5744667 YP_001559095.1 CDS Cphy_1988 NC_010001.1 2455089 2456153 D KEGG: tde:TDE0371 hypothetical protein; hypothetical protein 2455089..2456153 Clostridium phytofermentans ISDg 5744668 YP_001559096.1 CDS Cphy_1989 NC_010001.1 2456203 2456505 D hypothetical protein 2456203..2456505 Clostridium phytofermentans ISDg 5744669 YP_001559097.1 CDS Cphy_1990 NC_010001.1 2456659 2457690 D KEGG: bat:BAS2632 hypothetical protein; hypothetical protein 2456659..2457690 Clostridium phytofermentans ISDg 5744670 YP_001559098.1 CDS Cphy_1991 NC_010001.1 2457833 2458630 D KEGG: dsy:DSY1009 hypothetical protein; hypothetical protein 2457833..2458630 Clostridium phytofermentans ISDg 5744671 YP_001559099.1 CDS Cphy_1992 NC_010001.1 2458916 2459146 D hypothetical protein 2458916..2459146 Clostridium phytofermentans ISDg 5744672 YP_001559100.1 CDS Cphy_1993 NC_010001.1 2459165 2459344 D hypothetical protein 2459165..2459344 Clostridium phytofermentans ISDg 5744673 YP_001559101.1 CDS Cphy_1994 NC_010001.1 2459615 2461003 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cbe:Cbei_3030 radical SAM domain protein; radical SAM domain-containing protein 2459615..2461003 Clostridium phytofermentans ISDg 5744674 YP_001559102.1 CDS Cphy_1995 NC_010001.1 2460981 2463056 D KEGG: mac:MA4292 cell surface protein; hypothetical protein 2460981..2463056 Clostridium phytofermentans ISDg 5744675 YP_001559103.1 CDS Cphy_1996 NC_010001.1 2463267 2464184 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1865 hypothetical protein; binding-protein-dependent transport systems inner membrane component 2463267..2464184 Clostridium phytofermentans ISDg 5744676 YP_001559104.1 CDS Cphy_1997 NC_010001.1 2464200 2465246 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1864 hypothetical protein; binding-protein-dependent transport system inner membrane protein 2464200..2465246 Clostridium phytofermentans ISDg 5744677 YP_001559105.1 CDS Cphy_1998 NC_010001.1 2465263 2466264 D KEGG: dsy:DSY1863 hypothetical protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2465263..2466264 Clostridium phytofermentans ISDg 5744678 YP_001559106.1 CDS Cphy_1999 NC_010001.1 2466257 2467246 D KEGG: dsy:DSY1862 hypothetical protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2466257..2467246 Clostridium phytofermentans ISDg 5743027 YP_001559107.1 CDS Cphy_2000 NC_010001.1 2467518 2469170 D PFAM: extracellular solute-binding protein family 5; KEGG: dsy:DSY1861 hypothetical protein; extracellular solute-binding protein 2467518..2469170 Clostridium phytofermentans ISDg 5743028 YP_001559108.1 CDS Cphy_2001 NC_010001.1 2469662 2471206 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bfs:BF1668 ATP-dependent RNA helicase; DEAD/DEAH box helicase 2469662..2471206 Clostridium phytofermentans ISDg 5743029 YP_001559109.1 CDS Cphy_2002 NC_010001.1 2471352 2471648 D PFAM: YCII-related; KEGG: cpf:CPF_0987 hypothetical protein; hypothetical protein 2471352..2471648 Clostridium phytofermentans ISDg 5743030 YP_001559110.1 CDS Cphy_2003 NC_010001.1 2471732 2472706 R PFAM: NLP/P60 protein; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: cdf:CD2402 cell wall hydrolase; NLP/P60 protein complement(2471732..2472706) Clostridium phytofermentans ISDg 5743031 YP_001559111.1 CDS Cphy_2004 NC_010001.1 2473107 2474444 D hypothetical protein 2473107..2474444 Clostridium phytofermentans ISDg 5743032 YP_001559112.1 CDS Cphy_2005 NC_010001.1 2474846 2475289 R TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: lbu:LBUL_0275 large-conductance mechanosensitive channel; large conductance mechanosensitive channel protein complement(2474846..2475289) Clostridium phytofermentans ISDg 5743033 YP_001559113.1 CDS Cphy_2006 NC_010001.1 2475500 2476951 D PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bca:BCE_5592 ATP-dependent RNA helicase, DEAD/DEAH box family; DEAD/DEAH box helicase 2475500..2476951 Clostridium phytofermentans ISDg 5743034 YP_001559114.1 CDS Cphy_2007 NC_010001.1 2477436 2479025 D PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cbe:Cbei_4431 response regulator receiver protein; two component AraC family transcriptional regulator 2477436..2479025 Clostridium phytofermentans ISDg 5743035 YP_001559115.1 CDS Cphy_2008 NC_010001.1 2479036 2480793 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; Cache domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4430 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 2479036..2480793 Clostridium phytofermentans ISDg 5743036 YP_001559116.1 CDS Cphy_2009 NC_010001.1 2480821 2481798 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00907 D-ribose-binding periplasmic protein; periplasmic binding protein/LacI transcriptional regulator 2480821..2481798 Clostridium phytofermentans ISDg 5743037 YP_001559117.1 CDS Cphy_2010 NC_010001.1 2481937 2483439 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_C1350 ABC sugar transporter, fused ATPase subunits; ABC transporter 2481937..2483439 Clostridium phytofermentans ISDg 5743038 YP_001559118.1 CDS Cphy_2011 NC_010001.1 2483454 2484440 D PFAM: inner-membrane translocator; KEGG: vei:Veis_1087 inner-membrane translocator; monosaccharide-transporting ATPase 2483454..2484440 Clostridium phytofermentans ISDg 5743039 YP_001559119.1 CDS Cphy_2012 NC_010001.1 2484588 2485658 D KEGG: bch:Bcen2424_5037 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 2484588..2485658 Clostridium phytofermentans ISDg 5743040 YP_001559120.1 CDS Cphy_2013 NC_010001.1 2486327 2487589 D PFAM: proteinase inhibitor I4 serpin; KEGG: tte:TTE1560 serine protease inhibitor; proteinase inhibitor I4 serpin 2486327..2487589 Clostridium phytofermentans ISDg 5743041 YP_001559121.1 CDS Cphy_2014 NC_010001.1 2487645 2488907 D PFAM: proteinase inhibitor I4 serpin; KEGG: tte:TTE1560 serine protease inhibitor; proteinase inhibitor I4 serpin 2487645..2488907 Clostridium phytofermentans ISDg 5743042 YP_001559122.1 CDS Cphy_2015 NC_010001.1 2489645 2490706 D KEGG: dsy:DSY1945 hypothetical protein; hypothetical protein 2489645..2490706 Clostridium phytofermentans ISDg 5743043 YP_001559123.1 CDS Cphy_2016 NC_010001.1 2490733 2490981 D hypothetical protein 2490733..2490981 Clostridium phytofermentans ISDg 5743044 YP_001559124.1 CDS Cphy_2017 NC_010001.1 2491034 2491255 D KEGG: bcz:BCZK0849 hypothetical protein; hypothetical protein 2491034..2491255 Clostridium phytofermentans ISDg 5743045 YP_001559125.1 CDS Cphy_2018 NC_010001.1 2491782 2492117 D PFAM: transcriptional regulator PadR family protein; KEGG: dsy:DSY4371 hypothetical protein; PadR-like family transcriptional regulator 2491782..2492117 Clostridium phytofermentans ISDg 5743046 YP_001559126.1 CDS Cphy_2019 NC_010001.1 2492244 2492759 D KEGG: aha:AHA_2293 GAF domain protein; GAF domain-containing protein 2492244..2492759 Clostridium phytofermentans ISDg 5743047 YP_001559127.1 CDS Cphy_2020 NC_010001.1 2493821 2495389 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3089 ABC transporter related; ABC transporter 2493821..2495389 Clostridium phytofermentans ISDg 5743048 YP_001559128.1 CDS Cphy_2021 NC_010001.1 2495717 2496259 D KEGG: ctc:CTC00156 hypothetical protein; hypothetical protein 2495717..2496259 Clostridium phytofermentans ISDg 5743049 YP_001559129.1 CDS Cphy_2022 NC_010001.1 2496351 2497169 D PFAM: HhH-GPD family protein; 8-oxoguanine DNA glycosylase domain protein; KEGG: cdf:CD0191 DNA glycosylase (DNA repair protein); 8-oxoguanine DNA glycosylase 2496351..2497169 Clostridium phytofermentans ISDg 5743050 YP_001559130.1 CDS Cphy_2023 NC_010001.1 2497270 2499246 R PFAM: band 7 protein; KEGG: mlo:mll0592 hypothetical protein; hypothetical protein complement(2497270..2499246) Clostridium phytofermentans ISDg 5743051 YP_001559131.1 CDS Cphy_2024 NC_010001.1 2499751 2500152 D hypothetical protein 2499751..2500152 Clostridium phytofermentans ISDg 5743052 YP_001559132.1 CDS Cphy_2025 NC_010001.1 2500417 2502339 D PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: lsa:LSA1711 beta-galactosidase, large subunit (lactase, large subunit); glycoside hydrolase family protein 2500417..2502339 Clostridium phytofermentans ISDg 5743053 YP_001559133.1 CDS Cphy_2026 NC_010001.1 2502320 2503300 D PFAM: glycoside hydrolase family 42 domain 5 loop region; KEGG: lsa:LSA1710 beta-galactosidase, small subunit (lactase, small subunit); glycoside hydrolase family 42 2502320..2503300 Clostridium phytofermentans ISDg 5743054 YP_001559134.1 CDS Cphy_2027 NC_010001.1 2503558 2504571 D PFAM: aldo/keto reductase; KEGG: sen:SACE_0624 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 2503558..2504571 Clostridium phytofermentans ISDg 5743055 YP_001559135.1 CDS Cphy_2028 NC_010001.1 2504770 2506266 D PFAM: glycoside hydrolase family 43; Glycosyl hydrolase family 32 domain protein; KEGG: sco:SCO0118 xylosidase/arabinosidase; glycoside hydrolase family protein 2504770..2506266 Clostridium phytofermentans ISDg 5743056 YP_001559136.1 CDS Cphy_2029 NC_010001.1 2506576 2508747 D KEGG: amt:Amet_3803 copper amine oxidase domain protein; hypothetical protein 2506576..2508747 Clostridium phytofermentans ISDg 5743057 YP_001559137.1 CDS Cphy_2030 NC_010001.1 2509222 2509998 D PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: csc:Csac_0990 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 2509222..2509998 Clostridium phytofermentans ISDg 5743058 YP_001559138.1 CDS Cphy_2031 NC_010001.1 2510093 2510728 D PFAM: class II aldolase/adducin family protein; KEGG: chy:CHY_1555 L-fuculose phosphate aldolase; class II aldolase/adducin family protein 2510093..2510728 Clostridium phytofermentans ISDg 5743059 YP_001559139.1 CDS Cphy_2032 NC_010001.1 2510848 2511708 D TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine phosphorylase family 2; KEGG: ctc:CTC01531 purine nucleoside phosphorylase I; inosine guanosine and xanthosine phosphorylase family protein 2510848..2511708 Clostridium phytofermentans ISDg 5743060 YP_001559140.1 CDS Cphy_2033 NC_010001.1 2511875 2512939 D KEGG: sth:STH2068 methylthioribose-1-phosphate isomerase; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; aIF-2BI family translation initiation factor 2511875..2512939 Clostridium phytofermentans ISDg 5743061 YP_001559141.1 CDS Cphy_2034 NC_010001.1 2513265 2514476 D PFAM: basic membrane lipoprotein; KEGG: cpf:CPF_1832 lipoprotein, BMP family; basic membrane lipoprotein 2513265..2514476 Clostridium phytofermentans ISDg 5743062 YP_001559142.1 CDS Cphy_2035 NC_010001.1 2514729 2516273 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_1831 ABC transporter, ATP-binding protein; ABC transporter 2514729..2516273 Clostridium phytofermentans ISDg 5743063 YP_001559143.1 CDS Cphy_2036 NC_010001.1 2516263 2517474 D PFAM: inner-membrane translocator; KEGG: cpr:CPR_1550 ABC transporter (permeases)-like protein lmo1390; inner-membrane translocator 2516263..2517474 Clostridium phytofermentans ISDg 5743064 YP_001559144.1 CDS Cphy_2037 NC_010001.1 2517465 2518424 D PFAM: inner-membrane translocator; KEGG: bcy:Bcer98_2440 inner-membrane translocator; inner-membrane translocator 2517465..2518424 Clostridium phytofermentans ISDg 5743065 YP_001559145.1 CDS Cphy_2038 NC_010001.1 2518593 2519861 D PFAM: amidohydrolase; Amidohydrolase 3; KEGG: tte:TTE1593 cytosine deaminase and related metal-dependent hydrolase; amidohydrolase 2518593..2519861 Clostridium phytofermentans ISDg 5743066 YP_001559146.1 CDS Cphy_2039 NC_010001.1 2520050 2520970 R PFAM: regulatory protein MerR; KEGG: dsy:DSY0175 hypothetical protein; MerR family transcriptional regulator complement(2520050..2520970) Clostridium phytofermentans ISDg 5743067 YP_001559147.1 CDS Cphy_2040 NC_010001.1 2521069 2521269 R KEGG: ckl:CKL_1132 hypothetical protein; hypothetical protein complement(2521069..2521269) Clostridium phytofermentans ISDg 5743068 YP_001559148.1 CDS Cphy_2041 NC_010001.1 2521522 2522046 D PFAM: GCN5-related N-acetyltransferase; KEGG: pap:PSPA7_2796 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2521522..2522046 Clostridium phytofermentans ISDg 5743069 YP_001559149.1 CDS Cphy_2042 NC_010001.1 2522067 2522990 D PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: cbf:CLI_0810 transcriptional regulator; helix-turn-helix type 11 domain-containing protein 2522067..2522990 Clostridium phytofermentans ISDg 5743070 YP_001559150.1 CDS Cphy_2043 NC_010001.1 2523141 2523506 D PFAM: Endoribonuclease L-PSP; KEGG: sph:MGAS10270_Spy1823 translation initiation inhibitor; endoribonuclease L-PSP 2523141..2523506 Clostridium phytofermentans ISDg 5743071 YP_001559151.1 CDS Cphy_2044 NC_010001.1 2523737 2524729 D PFAM: domain of unknown function DUF1730; KEGG: cpf:CPF_1527 iron-sulfur cluster-binding protein; hypothetical protein 2523737..2524729 Clostridium phytofermentans ISDg 5743072 YP_001559152.1 CDS Cphy_2045 NC_010001.1 2525098 2525718 D hypothetical protein 2525098..2525718 Clostridium phytofermentans ISDg 5743073 YP_001559153.1 CDS Cphy_2046 NC_010001.1 2526021 2527352 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cbe:Cbei_4014 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2526021..2527352 Clostridium phytofermentans ISDg 5743074 YP_001559154.1 CDS Cphy_2047 NC_010001.1 2527488 2527835 D KEGG: dsy:DSY3609 hypothetical protein; hypothetical protein 2527488..2527835 Clostridium phytofermentans ISDg 5743075 YP_001559155.1 CDS Cphy_2048 NC_010001.1 2528018 2528731 D PFAM: protein of unknown function DUF434; KEGG: cbe:Cbei_1509 protein of unknown function DUF434; hypothetical protein 2528018..2528731 Clostridium phytofermentans ISDg 5743076 YP_001559156.1 CDS Cphy_2049 NC_010001.1 2529276 2531009 D KEGG: cac:CAC0955 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 2529276..2531009 Clostridium phytofermentans ISDg 5743077 YP_001559157.1 CDS Cphy_2050 NC_010001.1 2531421 2532017 D hypothetical protein 2531421..2532017 Clostridium phytofermentans ISDg 5743761 YP_001559158.1 CDS Cphy_2051 NC_010001.1 2532252 2532815 D hypothetical protein 2532252..2532815 Clostridium phytofermentans ISDg 5743762 YP_001559159.1 CDS Cphy_2052 NC_010001.1 2532924 2534393 R PFAM: inner-membrane translocator; KEGG: fnu:FN1896 ABC transporter integral membrane protein; inner-membrane translocator complement(2532924..2534393) Clostridium phytofermentans ISDg 5743752 YP_001559160.1 CDS Cphy_2053 NC_010001.1 2534383 2535486 R PFAM: inner-membrane translocator; KEGG: fnu:FN1897 ABC transporter integral membrane protein; inner-membrane translocator complement(2534383..2535486) Clostridium phytofermentans ISDg 5743753 YP_001559161.1 CDS Cphy_2054 NC_010001.1 2535479 2537080 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fno:Fnod_0051 ABC transporter related; ABC transporter complement(2535479..2537080) Clostridium phytofermentans ISDg 5743754 YP_001559162.1 CDS Cphy_2055 NC_010001.1 2537233 2538369 R KEGG: fno:Fnod_0052 conserved hypothetical lipoprotein; lipoprotein complement(2537233..2538369) Clostridium phytofermentans ISDg 5743755 YP_001559163.1 CDS Cphy_2056 NC_010001.1 2538743 2540677 D KEGG: cbe:Cbei_1773 hydrogenase, Fe-only; TIGRFAM: hydrogenase, Fe-only; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; hydrogenase, Fe-only 2538743..2540677 Clostridium phytofermentans ISDg 5743756 YP_001559164.1 CDS Cphy_2057 NC_010001.1 2540994 2541695 D KEGG: cpe:CPE1425 pyrrolidone carboxylylate peptidase; TIGRFAM: pyrrolidone-carboxylate peptidase; PFAM: peptidase C15 pyroglutamyl peptidase I; pyrrolidone-carboxylate peptidase 2540994..2541695 Clostridium phytofermentans ISDg 5743757 YP_001559165.1 CDS Cphy_2058 NC_010001.1 2542002 2543411 D PFAM: glycoside hydrolase family 5; KEGG: cac:CAC0826 endoglucanase family 5; cellulase 2542002..2543411 Clostridium phytofermentans ISDg 5743758 YP_001559166.1 CDS Cphy_2059 NC_010001.1 2543795 2544559 D KEGG: ctc:CTC02010 RNA polymerase sigma factor rpoD; hypothetical protein 2543795..2544559 Clostridium phytofermentans ISDg 5743759 YP_001559167.1 CDS Cphy_2060 NC_010001.1 2544977 2546347 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mac:MA1121 integral membrane protein; MATE efflux family protein 2544977..2546347 Clostridium phytofermentans ISDg 5743760 YP_001559168.1 CDS Cphy_2061 NC_010001.1 2546506 2546745 R hypothetical protein complement(2546506..2546745) Clostridium phytofermentans ISDg 5744067 YP_001559169.1 CDS Cphy_2062 NC_010001.1 2546968 2547720 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2297 daunorubicin resistance ABC transporter ATP-binding subunit; ABC transporter 2546968..2547720 Clostridium phytofermentans ISDg 5744068 YP_001559170.1 CDS Cphy_2063 NC_010001.1 2547953 2548819 D KEGG: aau:AAur_2329 ABC transporter, integral membrane protein; hypothetical protein 2547953..2548819 Clostridium phytofermentans ISDg 5744069 YP_001559171.1 CDS Cphy_2064 NC_010001.1 2549113 2550396 D KEGG: cpr:CPR_0886 MutS domain V protein; mismatch repair ATPase 2549113..2550396 Clostridium phytofermentans ISDg 5744070 YP_001559172.1 CDS Cphy_2065 NC_010001.1 2550526 2550768 D KEGG: sha:SH0197 DNA mismatch repair protein MutS; DNA mismatch repair protein MutS 2550526..2550768 Clostridium phytofermentans ISDg 5744071 YP_001559173.1 CDS Cphy_2066 NC_010001.1 2550817 2551242 D hypothetical protein 2550817..2551242 Clostridium phytofermentans ISDg 5744072 YP_001559174.1 CDS Cphy_2067 NC_010001.1 2551808 2553178 D TIGRFAM: glycyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: cno:NT01CX_1048 glycyl-tRNA synthetase; glycyl-tRNA synthetase 2551808..2553178 Clostridium phytofermentans ISDg 5744073 YP_001559175.1 CDS Cphy_2068 NC_010001.1 2553345 2555243 R PFAM: peptidase M56 BlaR1; KEGG: dsy:DSY3484 hypothetical protein; peptidase M56 BlaR1 complement(2553345..2555243) Clostridium phytofermentans ISDg 5744074 YP_001559176.1 CDS Cphy_2069 NC_010001.1 2555247 2555633 R PFAM: Penicillinase repressor; KEGG: dsy:DSY3483 hypothetical protein; CopY family transcriptional regulator complement(2555247..2555633) Clostridium phytofermentans ISDg 5744075 YP_001559177.1 CDS Cphy_2070 NC_010001.1 2555741 2556529 R KEGG: btk:BT9727_2690 hypothetical protein; hypothetical protein complement(2555741..2556529) Clostridium phytofermentans ISDg 5744076 YP_001559178.1 CDS Cphy_2071 NC_010001.1 2556720 2557058 D PFAM: transcriptional regulator PadR family protein; KEGG: dsy:DSY1094 hypothetical protein; PadR-like family transcriptional regulator 2556720..2557058 Clostridium phytofermentans ISDg 5744077 YP_001559179.1 CDS Cphy_2072 NC_010001.1 2557048 2557623 D KEGG: dsy:DSY1095 hypothetical protein; hypothetical protein 2557048..2557623 Clostridium phytofermentans ISDg 5744078 YP_001559180.1 CDS Cphy_2073 NC_010001.1 2558011 2558517 D KEGG: cbe:Cbei_1958 hypothetical protein; hypothetical protein 2558011..2558517 Clostridium phytofermentans ISDg 5744079 YP_001559181.1 CDS Cphy_2074 NC_010001.1 2558582 2559289 D PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: amt:Amet_1217 haloacid dehalogenase domain protein hydrolase; hydrolase 2558582..2559289 Clostridium phytofermentans ISDg 5744080 YP_001559182.1 CDS Cphy_2075 NC_010001.1 2559369 2560538 D PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cdf:CD0146 amidohydrolase; amidohydrolase 2559369..2560538 Clostridium phytofermentans ISDg 5744081 YP_001559183.1 CDS Cphy_2076 NC_010001.1 2560810 2561481 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_0537 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2560810..2561481 Clostridium phytofermentans ISDg 5744082 YP_001559184.1 CDS Cphy_2077 NC_010001.1 2561481 2562488 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cth:Cthe_0538 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2561481..2562488 Clostridium phytofermentans ISDg 5744083 YP_001559185.1 CDS Cphy_2078 NC_010001.1 2562731 2563414 D PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0539 ABC transporter related protein; ABC transporter 2562731..2563414 Clostridium phytofermentans ISDg 5744084 YP_001559186.1 CDS Cphy_2079 NC_010001.1 2563411 2566101 D PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_0540 protein of unknown function DUF214; hypothetical protein 2563411..2566101 Clostridium phytofermentans ISDg 5744085 YP_001559187.1 CDS Cphy_2080 NC_010001.1 2566265 2567089 D PFAM: cell wall hydrolase/autolysin; KEGG: gtn:GTNG_2805 N-acetylmuramoyl-L-alanine amidase, sporulationmother cell wall hydrolase; cell wall hydrolase/autolysin 2566265..2567089 Clostridium phytofermentans ISDg 5744086 YP_001559188.1 CDS Cphy_2081 NC_010001.1 2567398 2568648 R TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: cth:Cthe_0042 small GTP-binding protein; small GTP-binding protein complement(2567398..2568648) Clostridium phytofermentans ISDg 5744087 YP_001559189.1 CDS thiH NC_010001.1 2568774 2570192 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH complement(2568774..2570192) Clostridium phytofermentans ISDg 5744088 YP_001559190.1 CDS Cphy_2083 NC_010001.1 2570185 2571303 R catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase complement(2570185..2571303) Clostridium phytofermentans ISDg 5744089 YP_001559191.1 CDS Cphy_2084 NC_010001.1 2571880 2573673 D PFAM: chemotaxis sensory transducer; Heme NO binding domain protein; KEGG: cac:CAC3243 membrane associated methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2571880..2573673 Clostridium phytofermentans ISDg 5744090 YP_001559192.1 CDS Cphy_2085 NC_010001.1 2574440 2576149 D PFAM: Pyrrolo-quinoline quinone; KEGG: cth:Cthe_0739 hypothetical protein; Pyrrolo-quinoline quinone 2574440..2576149 Clostridium phytofermentans ISDg 5744091 YP_001559193.1 CDS Cphy_2086 NC_010001.1 2576711 2578417 D PFAM: Pyrrolo-quinoline quinone; KEGG: cth:Cthe_0739 hypothetical protein; Pyrrolo-quinoline quinone 2576711..2578417 Clostridium phytofermentans ISDg 5744092 YP_001559194.1 CDS Cphy_2087 NC_010001.1 2578457 2579296 D PFAM: metallophosphoesterase; KEGG: btk:BT9727_3733 calcineurin-like phosphoesterase; metallophosphoesterase 2578457..2579296 Clostridium phytofermentans ISDg 5744093 YP_001559195.1 CDS Cphy_2088 NC_010001.1 2579649 2579870 D KEGG: cth:Cthe_0739 hypothetical protein; hypothetical protein 2579649..2579870 Clostridium phytofermentans ISDg 5744094 YP_001559196.1 CDS Cphy_2089 NC_010001.1 2580113 2581177 R PFAM: oxidoreductase domain protein; KEGG: art:Arth_3674 oxidoreductase domain protein; oxidoreductase domain-containing protein complement(2580113..2581177) Clostridium phytofermentans ISDg 5744095 YP_001559197.1 CDS Cphy_2090 NC_010001.1 2581836 2583587 D hypothetical protein 2581836..2583587 Clostridium phytofermentans ISDg 5744096 YP_001559198.1 CDS Cphy_2091 NC_010001.1 2583741 2585411 D hypothetical protein 2583741..2585411 Clostridium phytofermentans ISDg 5744097 YP_001559199.1 CDS Cphy_2092 NC_010001.1 2585570 2587219 D hypothetical protein 2585570..2587219 Clostridium phytofermentans ISDg 5744098 YP_001559200.1 CDS Cphy_2094 NC_010001.1 2589692 2590483 R KEGG: tte:TTE2610 histidinol phosphatase and related hydrolases of the PHP family; PHP family histidinol phosphatase/hydrolase complement(2589692..2590483) Clostridium phytofermentans ISDg 5744100 YP_001559201.1 CDS Cphy_2096 NC_010001.1 2592300 2592569 R PFAM: Coat F domain protein; KEGG: amt:Amet_0905 coat F domain protein; coat F domain-containing protein complement(2592300..2592569) Clostridium phytofermentans ISDg 5744102 YP_001559202.1 CDS Cphy_2097 NC_010001.1 2592582 2592764 R hypothetical protein complement(2592582..2592764) Clostridium phytofermentans ISDg 5744103 YP_001559203.1 CDS Cphy_2098 NC_010001.1 2593413 2594369 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: lwe:lwe0750 amidohydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2593413..2594369 Clostridium phytofermentans ISDg 5744104 YP_001559204.1 CDS Cphy_2099 NC_010001.1 2594452 2594781 D hypothetical protein 2594452..2594781 Clostridium phytofermentans ISDg 5744105 YP_001559205.1 CDS Cphy_2100 NC_010001.1 2595165 2595725 D KEGG: dsy:DSY4108 hypothetical protein; hypothetical protein 2595165..2595725 Clostridium phytofermentans ISDg 5744106 YP_001559206.1 CDS Cphy_2101 NC_010001.1 2596443 2597078 D hypothetical protein 2596443..2597078 Clostridium phytofermentans ISDg 5744107 YP_001559207.1 CDS Cphy_2102 NC_010001.1 2597738 2598319 D PFAM: integrase family protein; KEGG: cbe:Cbei_1373 phage integrase family protein; integrase family protein 2597738..2598319 Clostridium phytofermentans ISDg 5744108 YP_001559208.1 CDS Cphy_2103 NC_010001.1 2598670 2599902 R PFAM: MOFRL domain protein; KEGG: amt:Amet_0678 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; hydroxypyruvate reductase complement(2598670..2599902) Clostridium phytofermentans ISDg 5744109 YP_001559209.1 CDS Cphy_2104 NC_010001.1 2599983 2601350 R PFAM: Gluconate transporter; Citrate transporter; KEGG: tde:TDE0207 permease, GntP family; gluconate transporter complement(2599983..2601350) Clostridium phytofermentans ISDg 5744110 YP_001559210.1 CDS Cphy_2105 NC_010001.1 2602117 2602755 D PFAM: glycoside hydrolase family 11; KEGG: bay:RBAM_033790 XynA; endo-1,4-beta-xylanase 2602117..2602755 Clostridium phytofermentans ISDg 5744111 YP_001559211.1 CDS Cphy_2106 NC_010001.1 2603026 2603856 D PFAM: protein of unknown function DUF323; KEGG: cbe:Cbei_3040 protein of unknown function DUF323; hypothetical protein 2603026..2603856 Clostridium phytofermentans ISDg 5744112 YP_001559212.1 CDS Cphy_2107 NC_010001.1 2604341 2605282 R PFAM: transcription activator effector binding; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH0594 transcriptional regulator (AraC/XylS family); AraC family transcriptional regulator complement(2604341..2605282) Clostridium phytofermentans ISDg 5744113 YP_001559213.1 CDS Cphy_2108 NC_010001.1 2605495 2607915 D PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; KEGG: tpt:Tpet_0863 endo-1,4-beta-xylanase; endo-1,4-beta-xylanase 2605495..2607915 Clostridium phytofermentans ISDg 5744114 YP_001559214.1 CDS Cphy_2109 NC_010001.1 2608431 2609351 D PFAM: aminoglycoside phosphotransferase; KEGG: bat:BAS2405 hypothetical protein; aminoglycoside phosphotransferase 2608431..2609351 Clostridium phytofermentans ISDg 5744115 YP_001559215.1 CDS Cphy_2110 NC_010001.1 2609432 2610592 R PFAM: sugar diacid recognition domain protein; KEGG: btk:BT9727_1189 transcriptional regulator; possible carbohydrate diacid regulator; transcriptional regulator CdaR complement(2609432..2610592) Clostridium phytofermentans ISDg 5744116 YP_001559216.1 CDS Cphy_2111 NC_010001.1 2610968 2612110 D PFAM: helix-turn-helix domain protein; KEGG: btl:BALH_2993 transcriptional regulator; XRE family transcriptional regulator 2610968..2612110 Clostridium phytofermentans ISDg 5744117 YP_001559217.1 CDS Cphy_2112 NC_010001.1 2612154 2612351 D KEGG: cth:Cthe_1537 hypothetical protein; hypothetical protein 2612154..2612351 Clostridium phytofermentans ISDg 5744118 YP_001559218.1 CDS Cphy_2113 NC_010001.1 2612344 2613255 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1536 ABC transporter related protein; ABC transporter 2612344..2613255 Clostridium phytofermentans ISDg 5744119 YP_001559219.1 CDS Cphy_2114 NC_010001.1 2613252 2614022 D KEGG: cth:Cthe_1535 hypothetical protein; hypothetical protein 2613252..2614022 Clostridium phytofermentans ISDg 5744120 YP_001559220.1 CDS Cphy_2115 NC_010001.1 2614505 2615665 D PFAM: major facilitator superfamily MFS_1; KEGG: cth:Cthe_2967 major facilitator superfamily MFS_1; major facilitator transporter 2614505..2615665 Clostridium phytofermentans ISDg 5744121 YP_001559221.1 CDS Cphy_2116 NC_010001.1 2615869 2616231 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cbf:CLI_2228 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 2615869..2616231 Clostridium phytofermentans ISDg 5744122 YP_001559222.1 CDS Cphy_2117 NC_010001.1 2616794 2617129 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_0063 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 2616794..2617129 Clostridium phytofermentans ISDg 5744123 YP_001559223.1 CDS Cphy_2118 NC_010001.1 2617414 2618568 D hypothetical protein 2617414..2618568 Clostridium phytofermentans ISDg 5744124 YP_001559224.1 CDS Cphy_2119 NC_010001.1 2619383 2621248 D PFAM: cytochrome c biogenesis protein transmembrane region; Heavy metal transport/detoxification protein; KEGG: cth:Cthe_1849 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 2619383..2621248 Clostridium phytofermentans ISDg 5744125 YP_001559225.1 CDS Cphy_2120 NC_010001.1 2621400 2621954 D KEGG: cth:Cthe_1850 hypothetical protein; hypothetical protein 2621400..2621954 Clostridium phytofermentans ISDg 5744126 YP_001559226.1 CDS Cphy_2121 NC_010001.1 2622164 2622859 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1847 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2622164..2622859 Clostridium phytofermentans ISDg 5744127 YP_001559227.1 CDS Cphy_2122 NC_010001.1 2622861 2624255 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ckl:CKL_1494 predicted sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2622861..2624255 Clostridium phytofermentans ISDg 5744128 YP_001559228.1 CDS Cphy_2123 NC_010001.1 2624531 2626852 D SMART: transglutaminase domain protein; KEGG: ssa:SSA_0384 hypothetical protein; transglutaminase domain-containing protein 2624531..2626852 Clostridium phytofermentans ISDg 5744129 YP_001559229.1 CDS Cphy_2124 NC_010001.1 2627181 2627966 D PFAM: oxidoreductase domain protein; aspartate dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: pha:PSHAb0019 dinucleotide-utilizing enzyme; aspartate dehydrogenase 2627181..2627966 Clostridium phytofermentans ISDg 5744130 YP_001559230.1 CDS Cphy_2125 NC_010001.1 2627980 2628885 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bvu:BVU_0072 lactate dehydrogenase and related dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 2627980..2628885 Clostridium phytofermentans ISDg 5744131 YP_001559231.1 CDS Cphy_2126 NC_010001.1 2628955 2629557 D PFAM: pentapeptide repeat protein; KEGG: mba:Mbar_A3729 hypothetical protein; pentapeptide repeat-containing protein 2628955..2629557 Clostridium phytofermentans ISDg 5744132 YP_001559232.1 CDS Cphy_2127 NC_010001.1 2629709 2631667 D contains C-terminal beta-propeller domain distantly related to WD-40 repeats; KEGG: cth:Cthe_2109 copper amine oxidase-like protein; hypothetical protein 2629709..2631667 Clostridium phytofermentans ISDg 5744133 YP_001559233.1 CDS Cphy_2128 NC_010001.1 2632016 2634589 R PFAM: glycoside hydrolase family 26; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: cth:Cthe_0032 glycoside hydrolase, family 26; mannan endo-1,4-beta-mannosidase complement(2632016..2634589) Clostridium phytofermentans ISDg 5744134 YP_001559234.1 CDS Cphy_2129 NC_010001.1 2634921 2635286 D PFAM: regulatory protein ArsR; KEGG: fno:Fnod_1613 regulatory protein ArsR; ArsR family transcriptional regulator 2634921..2635286 Clostridium phytofermentans ISDg 5744135 YP_001559235.1 CDS Cphy_2130 NC_010001.1 2635399 2635950 D hypothetical protein 2635399..2635950 Clostridium phytofermentans ISDg 5744136 YP_001559236.1 CDS Cphy_2131 NC_010001.1 2636185 2636763 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2636185..2636763 Clostridium phytofermentans ISDg 5744137 YP_001559237.1 CDS Cphy_2132 NC_010001.1 2637083 2639602 R KEGG: cbf:CLI_1616 hypothetical protein; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; P-type HAD superfamily ATPase complement(2637083..2639602) Clostridium phytofermentans ISDg 5744138 YP_001559238.1 CDS Cphy_2133 NC_010001.1 2640085 2640363 D PFAM: protein of unknown function DUF156; KEGG: dsy:DSY0389 hypothetical protein; hypothetical protein 2640085..2640363 Clostridium phytofermentans ISDg 5744139 YP_001559239.1 CDS Cphy_2134 NC_010001.1 2640571 2642034 D KEGG: ctc:CTC00436 hypothetical protein; hypothetical protein 2640571..2642034 Clostridium phytofermentans ISDg 5744140 YP_001559240.1 CDS Cphy_2135 NC_010001.1 2642424 2644175 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: spd:SPD_1621 ABC transporter, ATP-binding/permease; ABC transporter complement(2642424..2644175) Clostridium phytofermentans ISDg 5744141 YP_001559241.1 CDS Cphy_2136 NC_010001.1 2644165 2645166 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgl:SG0677 ABC transporter ATP-binding component; ABC transporter complement(2644165..2645166) Clostridium phytofermentans ISDg 5744142 YP_001559242.1 CDS Cphy_2137 NC_010001.1 2645176 2645928 R KEGG: lsa:LSA1148 multidrug ABC exporter, ATP-binding and membrane-spanning/permease subunits; multidrug ABC transporter ATPase/permease-like protein complement(2645176..2645928) Clostridium phytofermentans ISDg 5744143 YP_001559243.1 CDS Cphy_2138 NC_010001.1 2645925 2646398 R PFAM: regulatory protein MarR; KEGG: cbe:Cbei_0048 transcriptional regulator, TrmB; MarR family transcriptional regulator complement(2645925..2646398) Clostridium phytofermentans ISDg 5744144 YP_001559244.1 CDS Cphy_2139 NC_010001.1 2646855 2647898 D PFAM: extracellular solute-binding protein family 1; KEGG: cth:Cthe_1588 extracellular solute-binding protein, family 1; extracellular solute-binding protein 2646855..2647898 Clostridium phytofermentans ISDg 5744145 YP_001559245.1 CDS Cphy_2140 NC_010001.1 2647959 2649653 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cth:Cthe_1585 signal transduction histidine kinase, LytS; histidine kinase internal region 2647959..2649653 Clostridium phytofermentans ISDg 5744146 YP_001559246.1 CDS Cphy_2141 NC_010001.1 2649690 2650472 D PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cth:Cthe_1584 two component transcriptional regulator, AraC family; two component AraC family transcriptional regulator 2649690..2650472 Clostridium phytofermentans ISDg 5744147 YP_001559247.1 CDS Cphy_2142 NC_010001.1 2650834 2652171 D KEGG: tde:TDE0186 hypothetical protein; hypothetical protein 2650834..2652171 Clostridium phytofermentans ISDg 5744148 YP_001559248.1 CDS Cphy_2143 NC_010001.1 2652240 2654066 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tde:TDE0183 ABC transporter, permease; binding-protein-dependent transport systems inner membrane component 2652240..2654066 Clostridium phytofermentans ISDg 5744149 YP_001559249.1 CDS Cphy_2144 NC_010001.1 2654068 2655714 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tde:TDE0182 ABC transporter, ATP-binding protein; ABC transporter 2654068..2655714 Clostridium phytofermentans ISDg 5744150 YP_001559250.1 CDS Cphy_2145 NC_010001.1 2656506 2656790 D hypothetical protein 2656506..2656790 Clostridium phytofermentans ISDg 5744151 YP_001559251.1 CDS Cphy_2146 NC_010001.1 2656887 2657252 R hypothetical protein complement(2656887..2657252) Clostridium phytofermentans ISDg 5744152 YP_001559252.1 CDS Cphy_2147 NC_010001.1 2657278 2657796 D hypothetical protein 2657278..2657796 Clostridium phytofermentans ISDg 5744153 YP_001559253.1 CDS Cphy_2148 NC_010001.1 2657890 2659413 D PFAM: UMUC domain protein DNA-repair protein; KEGG: blo:BL1114 DNA polymerase V; DNA-repair protein 2657890..2659413 Clostridium phytofermentans ISDg 5744154 YP_001559254.1 CDS Cphy_2149 NC_010001.1 2659410 2659838 D KEGG: lre:Lreu_1305 hypothetical protein; hypothetical protein 2659410..2659838 Clostridium phytofermentans ISDg 5744155 YP_001559255.1 CDS Cphy_2150 NC_010001.1 2660334 2660927 D KEGG: fno:Fnod_0484 phosphodiesterase, MJ0936 family; phosphodiesterase 2660334..2660927 Clostridium phytofermentans ISDg 5744156 YP_001559256.1 CDS Cphy_2151 NC_010001.1 2661398 2661727 D PFAM: regulatory protein ArsR; KEGG: cbe:Cbei_2108 regulatory protein, ArsR; ArsR family transcriptional regulator 2661398..2661727 Clostridium phytofermentans ISDg 5744157 YP_001559257.1 CDS Cphy_2152 NC_010001.1 2661794 2663542 D KEGG: dsy:DSY4598 hypothetical protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA 2661794..2663542 Clostridium phytofermentans ISDg 5744158 YP_001559258.1 CDS Cphy_2153 NC_010001.1 2663601 2664650 D TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dsy:DSY4672 hypothetical protein; arsenical-resistance protein 2663601..2664650 Clostridium phytofermentans ISDg 5744159 YP_001559259.1 CDS Cphy_2154 NC_010001.1 2664668 2665051 D PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: dsy:DSY4151 hypothetical protein; arsenical resistance operon trans-acting repressor ArsD 2664668..2665051 Clostridium phytofermentans ISDg 5744160 YP_001559260.1 CDS Cphy_2155 NC_010001.1 2665090 2665500 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cbe:Cbei_2111 protein tyrosine phosphatase; protein tyrosine phosphatase 2665090..2665500 Clostridium phytofermentans ISDg 5744161 YP_001559261.1 CDS Cphy_2156 NC_010001.1 2665661 2666563 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ckl:CKL_3374 predicted transcriptional regulator; LysR family transcriptional regulator complement(2665661..2666563) Clostridium phytofermentans ISDg 5744162 YP_001559262.1 CDS Cphy_2157 NC_010001.1 2666709 2668148 D PFAM: Pyridoxal-dependent decarboxylase; KEGG: sep:SE0112 pyridoxal-deC; pyridoxal-dependent decarboxylase 2666709..2668148 Clostridium phytofermentans ISDg 5744163 YP_001559263.1 CDS Cphy_2158 NC_010001.1 2668476 2668760 D KEGG: cdf:CD0664B hypothetical protein; hypothetical protein 2668476..2668760 Clostridium phytofermentans ISDg 5744164 YP_001559264.1 CDS Cphy_2159 NC_010001.1 2668785 2669726 D KEGG: bha:BH1891 hypothetical protein; hypothetical protein 2668785..2669726 Clostridium phytofermentans ISDg 5744165 YP_001559265.1 CDS Cphy_2160 NC_010001.1 2669799 2670587 D hypothetical protein 2669799..2670587 Clostridium phytofermentans ISDg 5744166 YP_001559266.1 CDS Cphy_2161 NC_010001.1 2670607 2671065 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3240 cupin 2, conserved barrel domain protein; cupin 2670607..2671065 Clostridium phytofermentans ISDg 5744167 YP_001559267.1 CDS Cphy_2162 NC_010001.1 2671244 2671888 D PFAM: GCN5-related N-acetyltransferase; KEGG: lic:LIC12825 hypothetical protein; N-acetyltransferase GCN5 2671244..2671888 Clostridium phytofermentans ISDg 5744168 YP_001559268.1 CDS Cphy_2163 NC_010001.1 2671997 2672296 D KEGG: bcl:ABC1976 hypothetical protein; hypothetical protein 2671997..2672296 Clostridium phytofermentans ISDg 5744169 YP_001559269.1 CDS Cphy_2164 NC_010001.1 2672421 2673038 D hypothetical protein 2672421..2673038 Clostridium phytofermentans ISDg 5744170 YP_001559270.1 CDS Cphy_2165 NC_010001.1 2673110 2673586 D KEGG: cbe:Cbei_3228 hypothetical protein; hypothetical protein 2673110..2673586 Clostridium phytofermentans ISDg 5744171 YP_001559271.1 CDS Cphy_2166 NC_010001.1 2674071 2674601 D PFAM: nitroreductase; KEGG: ckl:CKL_0342 predicted oxidoreductase; nitroreductase 2674071..2674601 Clostridium phytofermentans ISDg 5744172 YP_001559272.1 CDS Cphy_2167 NC_010001.1 2675143 2675394 D KEGG: pth:PTH_1521 hypothetical protein; hypothetical protein 2675143..2675394 Clostridium phytofermentans ISDg 5744173 YP_001559273.1 CDS Cphy_2168 NC_010001.1 2675361 2675846 D hypothetical protein 2675361..2675846 Clostridium phytofermentans ISDg 5744174 YP_001559274.1 CDS Cphy_2169 NC_010001.1 2677724 2678545 D hypothetical protein 2677724..2678545 Clostridium phytofermentans ISDg 5744175 YP_001559275.1 CDS Cphy_2170 NC_010001.1 2678983 2679942 D KEGG: fnu:FN0847 TPR-repeat-containing proteins; hypothetical protein 2678983..2679942 Clostridium phytofermentans ISDg 5744176 YP_001559276.1 CDS Cphy_2171 NC_010001.1 2679952 2680446 D PFAM: heat shock protein DnaJ domain protein; molecular chaperone DnaJ 2679952..2680446 Clostridium phytofermentans ISDg 5744482 YP_001559277.1 CDS Cphy_2172 NC_010001.1 2682183 2683085 R PFAM: Integrase catalytic region; KEGG: cbe:Cbei_0719 integrase, catalytic region; integrase catalytic region complement(2682183..2683085) Clostridium phytofermentans ISDg 5744483 YP_001559278.1 CDS Cphy_2173 NC_010001.1 2683160 2683846 R PFAM: transposase IS3/IS911 family protein; KEGG: lga:LGAS_1507 transposase; transposase IS3/IS911 family protein complement(2683160..2683846) Clostridium phytofermentans ISDg 5744484 YP_001559279.1 CDS Cphy_2174 NC_010001.1 2683976 2684371 R hypothetical protein complement(2683976..2684371) Clostridium phytofermentans ISDg 5744485 YP_001559280.1 CDS Cphy_2175 NC_010001.1 2684368 2685171 R KEGG: amt:Amet_4677 hypothetical protein; hypothetical protein complement(2684368..2685171) Clostridium phytofermentans ISDg 5744486 YP_001559281.1 CDS Cphy_2176 NC_010001.1 2686381 2686956 D KEGG: bca:BCE_A0177 hypothetical protein; hypothetical protein 2686381..2686956 Clostridium phytofermentans ISDg 5744487 YP_001559282.1 CDS Cphy_2177 NC_010001.1 2686972 2688351 D KEGG: bca:BCE_A0176 hypothetical protein; hypothetical protein 2686972..2688351 Clostridium phytofermentans ISDg 5744488 YP_001559283.1 CDS Cphy_2178 NC_010001.1 2689334 2689666 R PFAM: Protein of unknown function CGGC region; KEGG: cbf:CLI_0908 CGGC domain protein; hypothetical protein complement(2689334..2689666) Clostridium phytofermentans ISDg 5744489 YP_001559284.1 CDS Cphy_2179 NC_010001.1 2689774 2690895 R PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bpl:BURPS1106A_A2865 cysteine desulfurase; cysteine desulfurase complement(2689774..2690895) Clostridium phytofermentans ISDg 5744490 YP_001559285.1 CDS Cphy_2180 NC_010001.1 2691004 2691660 D PFAM: Rhodanese domain protein; regulatory protein ArsR; KEGG: mba:Mbar_A3427 ArsR family transcriptional regulator; ArsR family transcriptional regulator 2691004..2691660 Clostridium phytofermentans ISDg 5744491 YP_001559286.1 CDS Cphy_2181 NC_010001.1 2691895 2692935 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cac:CAC3420 low specificity L-threonine aldolase; threonine aldolase complement(2691895..2692935) Clostridium phytofermentans ISDg 5744492 YP_001559287.1 CDS Cphy_2182 NC_010001.1 2693182 2694063 R PFAM: Patatin; KEGG: cpr:CPR_1546 patatin-like phospholipase family; patatin complement(2693182..2694063) Clostridium phytofermentans ISDg 5744493 YP_001559288.1 CDS Cphy_2183 NC_010001.1 2694243 2694989 R PFAM: CutC family protein; KEGG: bvu:BVU_3897 copper homeostasis protein; CutC family protein complement(2694243..2694989) Clostridium phytofermentans ISDg 5744494 YP_001559289.1 CDS Cphy_2184 NC_010001.1 2695170 2696594 R PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: cbe:Cbei_2737 leucyl aminopeptidase; leucyl aminopeptidase complement(2695170..2696594) Clostridium phytofermentans ISDg 5744495 YP_001559290.1 CDS Cphy_2185 NC_010001.1 2696627 2697487 R PFAM: protein of unknown function DUF161; KEGG: cdf:CD1950 hypothetical protein; hypothetical protein complement(2696627..2697487) Clostridium phytofermentans ISDg 5744496 YP_001559291.1 CDS Cphy_2186 NC_010001.1 2697540 2700275 R PFAM: transglutaminase domain protein; KEGG: pdi:BDI_3332 hypothetical protein; transglutaminase domain-containing protein complement(2697540..2700275) Clostridium phytofermentans ISDg 5744497 YP_001559292.1 CDS Cphy_2187 NC_010001.1 2700406 2702664 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: csc:Csac_2727 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator complement(2700406..2702664) Clostridium phytofermentans ISDg 5744498 YP_001559293.1 CDS Cphy_2188 NC_010001.1 2702785 2703105 D hypothetical protein 2702785..2703105 Clostridium phytofermentans ISDg 5744499 YP_001559294.1 CDS Cphy_2189 NC_010001.1 2703144 2704676 R PFAM: glutaredoxin 2; KEGG: mhu:Mhun_3231 cytochrome c biogenesis protein, transmembrane region; glutaredoxin complement(2703144..2704676) Clostridium phytofermentans ISDg 5744500 YP_001559295.1 CDS Cphy_2190 NC_010001.1 2704764 2706071 R PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: cpe:CPE0324 probable glycosyl hydrolase; alpha-L-fucosidase complement(2704764..2706071) Clostridium phytofermentans ISDg 5744501 YP_001559296.1 CDS Cphy_2191 NC_010001.1 2706212 2707117 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0362 polysaccharide ABC transporter permease; binding-protein-dependent transport systems inner membrane component complement(2706212..2707117) Clostridium phytofermentans ISDg 5744502 YP_001559297.1 CDS Cphy_2192 NC_010001.1 2707130 2708053 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3119 sugar ABC transporter permease; binding-protein-dependent transport systems inner membrane component complement(2707130..2708053) Clostridium phytofermentans ISDg 5744503 YP_001559298.1 CDS Cphy_2193 NC_010001.1 2708129 2709802 R PFAM: extracellular solute-binding protein family 1; KEGG: oih:OB3210 multiple sugar transport system substrate-binding protein; extracellular solute-binding protein complement(2708129..2709802) Clostridium phytofermentans ISDg 5744504 YP_001559299.1 CDS Cphy_2194 NC_010001.1 2710144 2710530 R KEGG: amt:Amet_1816 hypothetical protein; hypothetical protein complement(2710144..2710530) Clostridium phytofermentans ISDg 5744505 YP_001559300.1 CDS Cphy_2195 NC_010001.1 2710892 2711944 D PFAM: integrase family protein; KEGG: cdf:CD1932 tyrosine recombinase; integrase family protein 2710892..2711944 Clostridium phytofermentans ISDg 5744506 YP_001559301.1 CDS Cphy_2196 NC_010001.1 2712103 2712330 R hypothetical protein complement(2712103..2712330) Clostridium phytofermentans ISDg 5744507 YP_001559302.1 CDS Cphy_2197 NC_010001.1 2712452 2712796 R hypothetical protein complement(2712452..2712796) Clostridium phytofermentans ISDg 5744508 YP_001559303.1 CDS Cphy_2198 NC_010001.1 2712783 2713097 R hypothetical protein complement(2712783..2713097) Clostridium phytofermentans ISDg 5744509 YP_001559304.1 CDS Cphy_2199 NC_010001.1 2713097 2713576 R hypothetical protein complement(2713097..2713576) Clostridium phytofermentans ISDg 5744510 YP_001559305.1 CDS Cphy_2200 NC_010001.1 2714264 2716144 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE1062 ABC transporter, ATP-binding protein, HlyB family; ABC transporter related complement(2714264..2716144) Clostridium phytofermentans ISDg 5744511 YP_001559306.1 CDS Cphy_2201 NC_010001.1 2716131 2717987 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE1061 ABC transporter, ATP-binding/permease, HlyB family; ABC transporter complement(2716131..2717987) Clostridium phytofermentans ISDg 5744512 YP_001559307.1 CDS Cphy_2202 NC_010001.1 2718032 2718355 R PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein; phosphopantetheine-binding protein complement(2718032..2718355) Clostridium phytofermentans ISDg 5744513 YP_001559308.1 CDS Cphy_2203 NC_010001.1 2718360 2718614 R KEGG: lsl:LSL_1787 transposase ISLasa14, IS3 family; IS3 family transposase complement(2718360..2718614) Clostridium phytofermentans ISDg 5744514 YP_001559309.1 CDS Cphy_2204 NC_010001.1 2719208 2719666 D hypothetical protein 2719208..2719666 Clostridium phytofermentans ISDg 5744515 YP_001559310.1 CDS Cphy_2205 NC_010001.1 2720126 2720356 R KEGG: amt:Amet_1757 IstB domain protein ATP-binding protein; hypothetical protein complement(2720126..2720356) Clostridium phytofermentans ISDg 5744516 YP_001559311.1 CDS Cphy_2206 NC_010001.1 2721030 2721305 R hypothetical protein complement(2721030..2721305) Clostridium phytofermentans ISDg 5744517 YP_001559312.1 CDS Cphy_2207 NC_010001.1 2721373 2722410 R KEGG: ssp:SSP1089 FKBP-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)-like protein complement(2721373..2722410) Clostridium phytofermentans ISDg 5744518 YP_001559313.1 CDS Cphy_2208 NC_010001.1 2722427 2723719 R KEGG: dsy:DSY2015 hypothetical protein; hypothetical protein complement(2722427..2723719) Clostridium phytofermentans ISDg 5744519 YP_001559314.1 CDS Cphy_2209 NC_010001.1 2724406 2725350 R KEGG: bha:BH1891 hypothetical protein; hypothetical protein complement(2724406..2725350) Clostridium phytofermentans ISDg 5744520 YP_001559315.1 CDS Cphy_2210 NC_010001.1 2725508 2726581 R KEGG: ldb:Ldb0968 hypothetical protein; hypothetical protein complement(2725508..2726581) Clostridium phytofermentans ISDg 5744521 YP_001559316.1 CDS Cphy_2211 NC_010001.1 2726612 2728450 R KEGG: lbu:LBUL_0835 hypothetical protein; hypothetical protein complement(2726612..2728450) Clostridium phytofermentans ISDg 5744522 YP_001559317.1 CDS Cphy_2212 NC_010001.1 2728428 2730374 R PFAM: glycosyl transferase family 2; chitin synthase; KEGG: msm:MSMEG_0476 chitin synthase; glycosyl transferase family protein complement(2728428..2730374) Clostridium phytofermentans ISDg 5744523 YP_001559318.1 CDS Cphy_2213 NC_010001.1 2730477 2733857 R PFAM: polysaccharide deacetylase; KEGG: cdf:CD2598 oligosaccharide deacetylase; polysaccharide deacetylase complement(2730477..2733857) Clostridium phytofermentans ISDg 5744524 YP_001559319.1 CDS Cphy_2214 NC_010001.1 2733925 2735244 R TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: cth:Cthe_2340 UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase complement(2733925..2735244) Clostridium phytofermentans ISDg 5744525 YP_001559320.1 CDS Cphy_2215 NC_010001.1 2736223 2736753 R PFAM: Chloramphenicol phosphotransferase family protein; KEGG: ppr:PBPRA2780 hypothetical protein; chloramphenicol phosphotransferase family protein complement(2736223..2736753) Clostridium phytofermentans ISDg 5744526 YP_001559321.1 CDS Cphy_2216 NC_010001.1 2736794 2737645 R KEGG: bat:BAS2739 hypothetical protein; hypothetical protein complement(2736794..2737645) Clostridium phytofermentans ISDg 5744527 YP_001559322.1 CDS Cphy_2217 NC_010001.1 2737954 2738352 R KEGG: bpu:BPUM_0359 hypothetical protein; hypothetical protein complement(2737954..2738352) Clostridium phytofermentans ISDg 5744528 YP_001559323.1 CDS Cphy_2218 NC_010001.1 2738606 2738857 R KEGG: btk:pBT9727_0044 acetyltransferase; acetyltransferase complement(2738606..2738857) Clostridium phytofermentans ISDg 5744529 YP_001559324.1 CDS Cphy_2219 NC_010001.1 2739342 2739800 R hypothetical protein complement(2739342..2739800) Clostridium phytofermentans ISDg 5744530 YP_001559325.1 CDS Cphy_2220 NC_010001.1 2740762 2742240 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_2735 drug resistance ABC transporter, RA2 family, ATP-binding protein; ABC transporter 2740762..2742240 Clostridium phytofermentans ISDg 5744531 YP_001559326.1 CDS Cphy_2221 NC_010001.1 2742410 2743444 D TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: cbf:CLI_2911 florfenicol/chloramphenicol resistance protein; chloramphenicol/florfenicol resistance protein 2742410..2743444 Clostridium phytofermentans ISDg 5744532 YP_001559327.1 CDS Cphy_2222 NC_010001.1 2743730 2744206 R hypothetical protein complement(2743730..2744206) Clostridium phytofermentans ISDg 5744533 YP_001559328.1 CDS Cphy_2223 NC_010001.1 2744233 2744823 R PFAM: GCN5-related N-acetyltransferase; KEGG: mac:MA1701 acetyltransferase; N-acetyltransferase GCN5 complement(2744233..2744823) Clostridium phytofermentans ISDg 5744534 YP_001559329.1 CDS Cphy_2225 NC_010001.1 2745787 2746479 R KEGG: cbe:Cbei_2683 alpha/beta superfamily hydrolase; alpha/beta hydrolase complement(2745787..2746479) Clostridium phytofermentans ISDg 5744536 YP_001559330.1 CDS Cphy_2226 NC_010001.1 2746563 2746889 R KEGG: tte:TTE1718 thiol-disulfide isomerase and thioredoxins; thiol-disulfide isomerase and thioredoxin complement(2746563..2746889) Clostridium phytofermentans ISDg 5744537 YP_001559331.1 CDS Cphy_2227 NC_010001.1 2747288 2748205 R PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: cbf:CLI_2080 hypothetical protein; hypothetical protein complement(2747288..2748205) Clostridium phytofermentans ISDg 5744538 YP_001559332.1 CDS Cphy_2228 NC_010001.1 2748356 2749678 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; Helix-turn-helix type 11 domain protein; KEGG: bat:BAS2409 hypothetical protein; transcriptional regulator 2748356..2749678 Clostridium phytofermentans ISDg 5744539 YP_001559333.1 CDS Cphy_2229 NC_010001.1 2750045 2751046 R KEGG: ftw:FTW_0523 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I complement(2750045..2751046) Clostridium phytofermentans ISDg 5744540 YP_001559334.1 CDS Cphy_2230 NC_010001.1 2751170 2752021 D SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_2860 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 2751170..2752021 Clostridium phytofermentans ISDg 5744541 YP_001559335.1 CDS Cphy_2231 NC_010001.1 2752206 2752427 R hypothetical protein complement(2752206..2752427) Clostridium phytofermentans ISDg 5744542 YP_001559336.1 CDS Cphy_2232 NC_010001.1 2752855 2753613 D KEGG: ckl:CKL_0345 predicted peptidoglycan biosynthesis protein; hypothetical protein 2752855..2753613 Clostridium phytofermentans ISDg 5744543 YP_001559337.1 CDS Cphy_2233 NC_010001.1 2753821 2754471 R hypothetical protein complement(2753821..2754471) Clostridium phytofermentans ISDg 5744544 YP_001559338.1 CDS Cphy_2234 NC_010001.1 2754464 2755159 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_2362 predicted ABC transporter, ATPase component; ABC transporter complement(2754464..2755159) Clostridium phytofermentans ISDg 5744545 YP_001559339.1 CDS Cphy_2235 NC_010001.1 2755152 2755505 R PFAM: regulatory protein GntR HTH; KEGG: cac:CAC0265 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2755152..2755505) Clostridium phytofermentans ISDg 5744546 YP_001559340.1 CDS Cphy_2236 NC_010001.1 2755898 2756701 R PFAM: Abortive infection protein; KEGG: dsy:DSY1578 hypothetical protein; abortive infection protein complement(2755898..2756701) Clostridium phytofermentans ISDg 5744547 YP_001559341.1 CDS Cphy_2237 NC_010001.1 2756774 2758021 R PFAM: GHMP kinase; KEGG: dde:Dde_3653 galactokinase; galactokinase complement(2756774..2758021) Clostridium phytofermentans ISDg 5744548 YP_001559342.1 CDS Cphy_2238 NC_010001.1 2758041 2758286 R hypothetical protein complement(2758041..2758286) Clostridium phytofermentans ISDg 5744549 YP_001559343.1 CDS Cphy_2239 NC_010001.1 2758623 2759510 D PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3411 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 2758623..2759510 Clostridium phytofermentans ISDg 5744550 YP_001559344.1 CDS Cphy_2240 NC_010001.1 2759556 2760221 R KEGG: lmf:LMOf2365_0429 internalin; hypothetical protein complement(2759556..2760221) Clostridium phytofermentans ISDg 5744551 YP_001559345.1 CDS Cphy_2241 NC_010001.1 2760521 2761603 R PFAM: inner-membrane translocator; KEGG: cpr:CPR_1343 MglC; monosaccharide-transporting ATPase complement(2760521..2761603) Clostridium phytofermentans ISDg 5744552 YP_001559346.1 CDS Cphy_2242 NC_010001.1 2761619 2763118 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fnu:FN1166 galactoside transport ATP-binding protein mglA; ABC transporter complement(2761619..2763118) Clostridium phytofermentans ISDg 5744553 YP_001559347.1 CDS Cphy_2243 NC_010001.1 2763191 2764294 R KEGG: cbe:Cbei_4434 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator complement(2763191..2764294) Clostridium phytofermentans ISDg 5745303 YP_001559348.1 CDS Cphy_2246 NC_010001.1 2766142 2767005 D KEGG: cac:CAC3385 hypothetical protein; hypothetical protein 2766142..2767005 Clostridium phytofermentans ISDg 5745306 YP_001559349.1 CDS Cphy_2247 NC_010001.1 2767050 2767346 D KEGG: cac:CAC3385 hypothetical protein; hypothetical protein 2767050..2767346 Clostridium phytofermentans ISDg 5745307 YP_001559350.1 CDS Cphy_2248 NC_010001.1 2767598 2767906 D KEGG: cac:CAC3386 hypothetical protein; hypothetical protein 2767598..2767906 Clostridium phytofermentans ISDg 5745308 YP_001559351.1 CDS Cphy_2249 NC_010001.1 2768584 2769996 R hypothetical protein complement(2768584..2769996) Clostridium phytofermentans ISDg 5745309 YP_001559352.1 CDS Cphy_2250 NC_010001.1 2770414 2770653 R hypothetical protein complement(2770414..2770653) Clostridium phytofermentans ISDg 5745310 YP_001559353.1 CDS Cphy_2251 NC_010001.1 2771679 2772641 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00907 D-ribose-binding periplasmic protein; periplasmic binding protein/LacI transcriptional regulator complement(2771679..2772641) Clostridium phytofermentans ISDg 5745311 YP_001559354.1 CDS Cphy_2252 NC_010001.1 2772628 2774337 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; Cache domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4430 multi-sensor signal transduction histidine kinase; histidine kinase internal region complement(2772628..2774337) Clostridium phytofermentans ISDg 5745312 YP_001559355.1 CDS Cphy_2253 NC_010001.1 2774354 2775952 R PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cbe:Cbei_4431 response regulator receiver protein; two component AraC family transcriptional regulator complement(2774354..2775952) Clostridium phytofermentans ISDg 5745313 YP_001559356.1 CDS Cphy_2254 NC_010001.1 2776586 2777086 R PFAM: GCN5-related N-acetyltransferase; KEGG: tde:TDE2474 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(2776586..2777086) Clostridium phytofermentans ISDg 5745314 YP_001559357.1 CDS Cphy_2255 NC_010001.1 2777382 2778413 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: amt:Amet_3206 FMN-dependent alpha-hydroxy acid dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase complement(2777382..2778413) Clostridium phytofermentans ISDg 5745315 YP_001559358.1 CDS Cphy_2256 NC_010001.1 2778835 2779296 R TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: pmy:Pmen_4206 phosphodiesterase, MJ0936 family; phosphodiesterase complement(2778835..2779296) Clostridium phytofermentans ISDg 5745316 YP_001559359.1 CDS Cphy_2257 NC_010001.1 2779625 2781097 R PFAM: protein of unknown function DUF187; KEGG: btk:BT9727_0818 conserved hypothetical protein and possible S-layer protein fusion; hypothetical protein complement(2779625..2781097) Clostridium phytofermentans ISDg 5745317 YP_001559360.1 CDS Cphy_2258 NC_010001.1 2781202 2783832 R PFAM: cell wall hydrolase/autolysin; copper amine oxidase domain protein; KEGG: amt:Amet_0953 N-acetylmuramoyl-L-alanine amidase; cell wall hydrolase/autolysin complement(2781202..2783832) Clostridium phytofermentans ISDg 5745318 YP_001559361.1 CDS Cphy_2259 NC_010001.1 2784064 2784792 D PFAM: PP-loop domain protein; KEGG: cth:Cthe_2181 predicted ATPase of the PP-loop superfamily implicated in cell cycle control; PP-loop domain-containing protein 2784064..2784792 Clostridium phytofermentans ISDg 5745319 YP_001559362.1 CDS Cphy_2260 NC_010001.1 2784920 2785681 R hypothetical protein complement(2784920..2785681) Clostridium phytofermentans ISDg 5745320 YP_001559363.1 CDS Cphy_2261 NC_010001.1 2785803 2787524 R PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: amt:Amet_0707 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/subunit complement(2785803..2787524) Clostridium phytofermentans ISDg 5745321 YP_001559364.1 CDS Cphy_2262 NC_010001.1 2788055 2789236 R PFAM: N-acylglucosamine 2-epimerase; KEGG: csc:Csac_0294 N-acylglucosamine 2-epimerase; N-acylglucosamine 2-epimerase complement(2788055..2789236) Clostridium phytofermentans ISDg 5745322 YP_001559365.1 CDS Cphy_2263 NC_010001.1 2789493 2790608 R KEGG: cbh:CLC_2573 lipase/acylhydrolase, GDSL family; hypothetical protein complement(2789493..2790608) Clostridium phytofermentans ISDg 5745323 YP_001559366.1 CDS Cphy_2264 NC_010001.1 2790617 2791639 R PFAM: glycosidase PH1107-related; KEGG: tma:TM1225 hypothetical protein; glycosidase PH1107-like protein complement(2790617..2791639) Clostridium phytofermentans ISDg 5745324 YP_001559367.1 CDS Cphy_2265 NC_010001.1 2791741 2793189 R PFAM: extracellular solute-binding protein family 1; KEGG: cth:Cthe_1046 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(2791741..2793189) Clostridium phytofermentans ISDg 5745325 YP_001559368.1 CDS Cphy_2266 NC_010001.1 2793236 2795134 R hypothetical protein complement(2793236..2795134) Clostridium phytofermentans ISDg 5745326 YP_001559369.1 CDS Cphy_2267 NC_010001.1 2795272 2796264 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2413 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2795272..2796264) Clostridium phytofermentans ISDg 5745327 YP_001559370.1 CDS Cphy_2268 NC_010001.1 2796278 2797195 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2414 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(2796278..2797195) Clostridium phytofermentans ISDg 5745328 YP_001559371.1 CDS Cphy_2269 NC_010001.1 2797161 2799770 R KEGG: csc:Csac_2415 hypothetical protein; hypothetical protein complement(2797161..2799770) Clostridium phytofermentans ISDg 5745329 YP_001559372.1 CDS Cphy_2272 NC_010001.1 2801915 2802787 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2417 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(2801915..2802787) Clostridium phytofermentans ISDg 5745331 YP_001559373.1 CDS Cphy_2273 NC_010001.1 2802804 2803739 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2418 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2802804..2803739) Clostridium phytofermentans ISDg 5745332 YP_001559374.1 CDS Cphy_2274 NC_010001.1 2803758 2806796 R PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_2419 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(2803758..2806796) Clostridium phytofermentans ISDg 5745333 YP_001559375.1 CDS Cphy_2275 NC_010001.1 2806789 2807427 R KEGG: tte:TTE1959 hypothetical protein; hypothetical protein complement(2806789..2807427) Clostridium phytofermentans ISDg 5745334 YP_001559376.1 CDS Cphy_2276 NC_010001.1 2807484 2809082 R PFAM: glycoside hydrolase family 26; Carbohydrate binding family 6; KEGG: cth:Cthe_2811 glycoside hydrolase, family 26; Mannan endo-1,4-beta-mannosidase complement(2807484..2809082) Clostridium phytofermentans ISDg 5745335 YP_001559377.1 CDS Cphy_2277 NC_010001.1 2809660 2810001 D hypothetical protein 2809660..2810001 Clostridium phytofermentans ISDg 5745336 YP_001559378.1 CDS Cphy_2278 NC_010001.1 2810437 2811483 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cbe:Cbei_3881 regulatory protein, LacI; LacI family transcriptional regulator complement(2810437..2811483) Clostridium phytofermentans ISDg 5745337 YP_001559379.1 CDS Cphy_2279 NC_010001.1 2811948 2812523 D KEGG: efa:EF0937 hypothetical protein; hypothetical protein 2811948..2812523 Clostridium phytofermentans ISDg 5745338 YP_001559380.1 CDS queA NC_010001.1 2812772 2813866 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(2812772..2813866) Clostridium phytofermentans ISDg 5745339 YP_001559381.1 CDS Cphy_2281 NC_010001.1 2814137 2815828 R TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: amt:Amet_2340 SpoIID/LytB domain protein; SpoIID/LytB domain-containing protein complement(2814137..2815828) Clostridium phytofermentans ISDg 5745340 YP_001559382.1 CDS Cphy_2282 NC_010001.1 2816022 2816549 D hypothetical protein 2816022..2816549 Clostridium phytofermentans ISDg 5745341 YP_001559383.1 CDS Cphy_2283 NC_010001.1 2816942 2817787 R KEGG: plu:plu1458 unnamed protein product; similar to streptomycin adenyltransferase; hypothetical protein complement(2816942..2817787) Clostridium phytofermentans ISDg 5745342 YP_001559384.1 CDS Cphy_2284 NC_010001.1 2817806 2818384 R KEGG: cth:Cthe_0350 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I complement(2817806..2818384) Clostridium phytofermentans ISDg 5745343 YP_001559385.1 CDS pyrE NC_010001.1 2818734 2819411 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(2818734..2819411) Clostridium phytofermentans ISDg 5745344 YP_001559386.1 CDS Cphy_2286 NC_010001.1 2819471 2820373 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B complement(2819471..2820373) Clostridium phytofermentans ISDg 5745345 YP_001559387.1 CDS Cphy_2287 NC_010001.1 2820492 2821262 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: amt:Amet_4209 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit complement(2820492..2821262) Clostridium phytofermentans ISDg 5745346 YP_001559388.1 CDS Cphy_2288 NC_010001.1 2821316 2821909 R KEGG: tde:TDE0164 hypothetical protein; hypothetical protein complement(2821316..2821909) Clostridium phytofermentans ISDg 5745347 YP_001559389.1 CDS Cphy_2289 NC_010001.1 2821986 2823359 R PFAM: peptidase M23B; KEGG: bcl:ABC2951 metalloendopeptidase; peptidase M23B complement(2821986..2823359) Clostridium phytofermentans ISDg 5745348 YP_001559390.1 CDS Cphy_2290 NC_010001.1 2823526 2824149 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: ckl:CKL_1335 SigE1; FliA/WhiG family RNA polymerase sigma factor 2823526..2824149 Clostridium phytofermentans ISDg 5745349 YP_001559391.1 CDS Cphy_2291 NC_010001.1 2824360 2825640 R PFAM: peptidase U32; KEGG: amt:Amet_2471 peptidase U32; peptidase U32 complement(2824360..2825640) Clostridium phytofermentans ISDg 5745350 YP_001559392.1 CDS Cphy_2292 NC_010001.1 2825780 2826499 R PFAM: O-methyltransferase family 3; KEGG: cbh:CLC_2427 O-methyltransferase family protein; O-methyltransferase family protein complement(2825780..2826499) Clostridium phytofermentans ISDg 5745351 YP_001559393.1 CDS Cphy_2293 NC_010001.1 2826713 2827168 R hypothetical protein complement(2826713..2827168) Clostridium phytofermentans ISDg 5745352 YP_001559394.1 CDS Cphy_2294 NC_010001.1 2827194 2829050 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: cth:Cthe_1302 hypothetical protein; beta-lactamase domain-containing protein complement(2827194..2829050) Clostridium phytofermentans ISDg 5745353 YP_001559395.1 CDS Cphy_2295 NC_010001.1 2829110 2829589 R PFAM: ferric-uptake regulator; KEGG: cdf:CD1287 ferric uptake regulation protein; ferric uptake regulator family protein complement(2829110..2829589) Clostridium phytofermentans ISDg 5745354 YP_001559396.1 CDS Cphy_2296 NC_010001.1 2830062 2830334 R hypothetical protein complement(2830062..2830334) Clostridium phytofermentans ISDg 5745355 YP_001559397.1 CDS Cphy_2297 NC_010001.1 2830432 2830884 R PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: dsy:DSY2418 hypothetical protein; Holliday junction resolvase YqgF complement(2830432..2830884) Clostridium phytofermentans ISDg 5745356 YP_001559398.1 CDS Cphy_2298 NC_010001.1 2831000 2831266 R PFAM: protein of unknown function DUF965; KEGG: csc:Csac_1773 protein of unknown function DUF965; hypothetical protein complement(2831000..2831266) Clostridium phytofermentans ISDg 5745357 YP_001559399.1 CDS Cphy_2299 NC_010001.1 2831394 2832794 R KEGG: tte:TTE0962 2-methylthioadenine synthetase; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme complement(2831394..2832794) Clostridium phytofermentans ISDg 5745358 YP_001559400.1 CDS Cphy_2300 NC_010001.1 2833053 2833286 D PFAM: phosphocarrier HPr protein; KEGG: csc:Csac_1846 hypothetical protein; phosphotransferase system, phosphocarrier protein HPr 2833053..2833286 Clostridium phytofermentans ISDg 5745359 YP_001559401.1 CDS Cphy_2301 NC_010001.1 2833335 2834510 R TIGRFAM: thiamine biosynthesis/tRNA modification protein ThiI; PFAM: thiamine biosynthesis protein; THUMP domain protein; ExsB family protein; KEGG: cth:Cthe_1063 thiamine biosynthesis/tRNA modification protein ThiI; thiamine biosynthesis/tRNA modification protein ThiI complement(2833335..2834510) Clostridium phytofermentans ISDg 5745360 YP_001559402.1 CDS Cphy_2302 NC_010001.1 2834743 2835930 R PFAM: aminotransferase class V; KEGG: tte:TTE1663 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; class V aminotransferase complement(2834743..2835930) Clostridium phytofermentans ISDg 5745361 YP_001559403.1 CDS Cphy_2303 NC_010001.1 2836001 2836741 R PFAM: protein of unknown function DUF558; KEGG: cth:Cthe_1319 protein of unknown function DUF558; hypothetical protein complement(2836001..2836741) Clostridium phytofermentans ISDg 5745362 YP_001559404.1 CDS Cphy_2304 NC_010001.1 2836995 2840126 R KEGG: cbe:Cbei_4135 pullulanase, type I; TIGRFAM: pullulanase, type I; PFAM: glycoside hydrolase family 13 domain protein; pullanase-associated protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; pullulanase, type I complement(2836995..2840126) Clostridium phytofermentans ISDg 5745363 YP_001559405.1 CDS Cphy_2305 NC_010001.1 2840111 2840968 R hypothetical protein complement(2840111..2840968) Clostridium phytofermentans ISDg 5745364 YP_001559406.1 CDS Cphy_2306 NC_010001.1 2840949 2841791 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: btl:BALH_3631 maltosaccharide ABC transporter, permease; binding-protein-dependent transport system inner membrane protein complement(2840949..2841791) Clostridium phytofermentans ISDg 5745365 YP_001559407.1 CDS Cphy_2307 NC_010001.1 2841802 2843130 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bca:BCE_4063 maltosaccharide ABC transporter, permease; binding-protein-dependent transport system inner membrane protein complement(2841802..2843130) Clostridium phytofermentans ISDg 5745366 YP_001559408.1 CDS Cphy_2308 NC_010001.1 2843299 2844621 R PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA3175 maltose-binding periplasmic protein; extracellular solute-binding protein complement(2843299..2844621) Clostridium phytofermentans ISDg 5745367 YP_001559409.1 CDS Cphy_2309 NC_010001.1 2845275 2846276 R TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; KEGG: cth:Cthe_1320 ribosomal protein L11 methyltransferase; 50S ribosomal protein L11 methyltransferase complement(2845275..2846276) Clostridium phytofermentans ISDg 5745368 YP_001559410.1 CDS Cphy_2310 NC_010001.1 2846373 2847518 R TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: tte:TTE0956 Molecular chaperones (contain C-terminal Zn finger domain); molecular chaperone DnaJ complement(2846373..2847518) Clostridium phytofermentans ISDg 5745369 YP_001559411.1 CDS Cphy_2311 NC_010001.1 2847865 2849727 R KEGG: cth:Cthe_1322 chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; molecular chaperone DnaK complement(2847865..2849727) Clostridium phytofermentans ISDg 5745370 YP_001559412.1 CDS Cphy_2312 NC_010001.1 2849948 2850622 R PFAM: GrpE protein; KEGG: cth:Cthe_1323 GrpE protein; heat shock protein GrpE complement(2849948..2850622) Clostridium phytofermentans ISDg 5745371 YP_001559413.1 CDS Cphy_2313 NC_010001.1 2850644 2851681 R TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: amt:Amet_3050 heat-inducible transcription repressor HrcA; heat-inducible transcription repressor HrcA complement(2850644..2851681) Clostridium phytofermentans ISDg 5745372 YP_001559414.1 CDS Cphy_2314 NC_010001.1 2851963 2853189 R KEGG: cdf:CD2464 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase complement(2851963..2853189) Clostridium phytofermentans ISDg 5745373 YP_001559415.1 CDS Cphy_2315 NC_010001.1 2853212 2855026 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(2853212..2855026) Clostridium phytofermentans ISDg 5745374 YP_001559416.1 CDS Cphy_2316 NC_010001.1 2855781 2857232 R PFAM: Stage II sporulation P family protein; KEGG: cth:Cthe_1328 stage II sporulation P; stage II sporulation P family protein complement(2855781..2857232) Clostridium phytofermentans ISDg 5745375 YP_001559417.1 CDS Cphy_2317 NC_010001.1 2857239 2858162 R Initiates the rapid degradation of small, acid-soluble proteins during spore germination; germination protease complement(2857239..2858162) Clostridium phytofermentans ISDg 5745376 YP_001559418.1 CDS rpsT NC_010001.1 2858396 2858659 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 2858396..2858659 Clostridium phytofermentans ISDg 5745377 YP_001559419.1 CDS Cphy_2319 NC_010001.1 2859263 2859625 D PFAM: regulatory protein GntR HTH; KEGG: drm:Dred_3243 regulatory protein GntR, HTH; GntR family transcriptional regulator 2859263..2859625 Clostridium phytofermentans ISDg 5745378 YP_001559420.1 CDS Cphy_2320 NC_010001.1 2859612 2860511 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lbu:LBUL_1588 ABC-type multidrug transport system, ATPase component; ABC transporter 2859612..2860511 Clostridium phytofermentans ISDg 5745379 YP_001559421.1 CDS Cphy_2321 NC_010001.1 2860486 2862570 D KEGG: amt:Amet_1325 hypothetical protein; hypothetical protein 2860486..2862570 Clostridium phytofermentans ISDg 5745380 YP_001559422.1 CDS Cphy_2322 NC_010001.1 2862787 2863749 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bvu:BVU_2307 GFO/IDH/MocA-family oxidoreductase; oxidoreductase domain-containing protein complement(2862787..2863749) Clostridium phytofermentans ISDg 5745381 YP_001559423.1 CDS Cphy_2323 NC_010001.1 2864265 2864483 R KEGG: ckl:CKL_3502 predicted penicillin binding protein; penicillin binding protein complement(2864265..2864483) Clostridium phytofermentans ISDg 5745382 YP_001559424.1 CDS Cphy_2324 NC_010001.1 2864490 2864849 R PFAM: Penicillinase repressor; KEGG: dsy:DSY0731 hypothetical protein; CopY family transcriptional regulator complement(2864490..2864849) Clostridium phytofermentans ISDg 5745383 YP_001559425.1 CDS Cphy_2325 NC_010001.1 2864987 2866246 R KEGG: cbe:Cbei_2116 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(2864987..2866246) Clostridium phytofermentans ISDg 5745384 YP_001559426.1 CDS Cphy_2326 NC_010001.1 2866632 2867006 R hypothetical protein complement(2866632..2867006) Clostridium phytofermentans ISDg 5745385 YP_001559427.1 CDS Cphy_2327 NC_010001.1 2867086 2867580 D PFAM: thioesterase superfamily protein; KEGG: bha:BH0798 acyl-CoA hydrolase; thioesterase superfamily protein 2867086..2867580 Clostridium phytofermentans ISDg 5745386 YP_001559428.1 CDS Cphy_2328 NC_010001.1 2867825 2869000 R PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(2867825..2869000) Clostridium phytofermentans ISDg 5745387 YP_001559429.1 CDS Cphy_2329 NC_010001.1 2869332 2869994 R PFAM: deoxynucleoside kinase; KEGG: lin:lin1817 similar to deoxyguanosine kinase/deoxyadenosine kinase(I) subunit; deoxyadenosine kinase complement(2869332..2869994) Clostridium phytofermentans ISDg 5745388 YP_001559430.1 CDS Cphy_2330 NC_010001.1 2870292 2871740 R hypothetical protein complement(2870292..2871740) Clostridium phytofermentans ISDg 5745389 YP_001559431.1 CDS Cphy_2331 NC_010001.1 2872033 2873976 R KEGG: cpe:CPE1552 pullulanase; TIGRFAM: pullulanase, type I; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; pullulanase complement(2872033..2873976) Clostridium phytofermentans ISDg 5745390 YP_001559432.1 CDS Cphy_2332 NC_010001.1 2874432 2875661 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: lsl:LSL_1568 beta-N-acetylhexosaminidase; Beta-N-acetylhexosaminidase complement(2874432..2875661) Clostridium phytofermentans ISDg 5745391 YP_001559433.1 CDS Cphy_2333 NC_010001.1 2875953 2876390 R KEGG: tme:Tmel_1180 GatB/YqeY domain protein; GatB/YqeY domain-containing protein complement(2875953..2876390) Clostridium phytofermentans ISDg 5745392 YP_001559434.1 CDS folE NC_010001.1 2876608 2877192 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2876608..2877192 Clostridium phytofermentans ISDg 5745393 YP_001559435.1 CDS Cphy_2335 NC_010001.1 2877189 2877965 D hypothetical protein 2877189..2877965 Clostridium phytofermentans ISDg 5745394 YP_001559436.1 CDS Cphy_2336 NC_010001.1 2878244 2880664 R PFAM: glycosyl transferase group 1; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: ecc:c3694 hypothetical protein; group 1 glycosyl transferase complement(2878244..2880664) Clostridium phytofermentans ISDg 5745395 YP_001559437.1 CDS Cphy_2337 NC_010001.1 2881225 2882073 R PFAM: diaminopimelate epimerase; KEGG: mmw:Mmwyl1_0680 diaminopimelate epimerase; diaminopimelate epimerase complement(2881225..2882073) Clostridium phytofermentans ISDg 5745396 YP_001559438.1 CDS Cphy_2338 NC_010001.1 2882581 2883465 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cac:CAC2818 AraC-type DNA-binding domain-containing protein, transcriptional regulator; AraC family transcriptional regulator 2882581..2883465 Clostridium phytofermentans ISDg 5745397 YP_001559439.1 CDS Cphy_2339 NC_010001.1 2883550 2884353 R PFAM: protein of unknown function DUF214; KEGG: btk:BT9727_3141 ABC transporter, permease; hypothetical protein complement(2883550..2884353) Clostridium phytofermentans ISDg 5745398 YP_001559440.1 CDS Cphy_2340 NC_010001.1 2884437 2885246 R KEGG: btk:BT9727_3141 ABC transporter, permease; lipoprotein release permease-like protein complement(2884437..2885246) Clostridium phytofermentans ISDg 5745399 YP_001559441.1 CDS Cphy_2341 NC_010001.1 2885548 2887212 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gka:GK0615 exo-alpha-1,4-glucosidase; alpha amylase complement(2885548..2887212) Clostridium phytofermentans ISDg 5745400 YP_001559442.1 CDS Cphy_2342 NC_010001.1 2887378 2888994 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cbe:Cbei_0735 alpha amylase, catalytic region; alpha amylase complement(2887378..2888994) Clostridium phytofermentans ISDg 5745401 YP_001559443.1 CDS Cphy_2343 NC_010001.1 2889298 2891253 R TIGRFAM: glycogen debranching enzyme; PFAM: Amylo-alpha-16-glucosidase; KEGG: vfi:VF2048 amylo-1,6-glucosidase; glycogen debranching protein complement(2889298..2891253) Clostridium phytofermentans ISDg 5745402 YP_001559444.1 CDS Cphy_2344 NC_010001.1 2891543 2893270 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: llm:llmg_0743 alpha-amylase; alpha amylase catalytic region complement(2891543..2893270) Clostridium phytofermentans ISDg 5745403 YP_001559445.1 CDS Cphy_2345 NC_010001.1 2893664 2894530 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF1343 sugar ABC transporter, permease; binding-protein-dependent transport system inner membrane protein complement(2893664..2894530) Clostridium phytofermentans ISDg 5745404 YP_001559446.1 CDS Cphy_2346 NC_010001.1 2894530 2895924 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF1344 sugar ABC transporter, permease; fructose-bisphosphate aldolase complement(2894530..2895924) Clostridium phytofermentans ISDg 5745405 YP_001559447.1 CDS Cphy_2347 NC_010001.1 2896060 2897355 R PFAM: extracellular solute-binding protein family 1; KEGG: cdi:DIP0534 sugar-binding secreted protein; extracellular solute-binding protein complement(2896060..2897355) Clostridium phytofermentans ISDg 5745406 YP_001559448.1 CDS Cphy_2348 NC_010001.1 2897538 2899787 R KEGG: cbe:Cbei_0285 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase complement(2897538..2899787) Clostridium phytofermentans ISDg 5745407 YP_001559449.1 CDS Cphy_2349 NC_010001.1 2899812 2901263 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(2899812..2901263) Clostridium phytofermentans ISDg 5745408 YP_001559450.1 CDS Cphy_2350 NC_010001.1 2901320 2903071 R PFAM: glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gtn:GTNG_0610 neopullulanase; alpha amylase complement(2901320..2903071) Clostridium phytofermentans ISDg 5745409 YP_001559451.1 CDS Cphy_2351 NC_010001.1 2903218 2904213 R PFAM: regulatory protein LacI; KEGG: bha:BH3692 transcriptional regulator; LacI family transcriptional regulator complement(2903218..2904213) Clostridium phytofermentans ISDg 5745410 YP_001559452.1 CDS Cphy_2352 NC_010001.1 2904477 2905811 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase complement(2904477..2905811) Clostridium phytofermentans ISDg 5745411 YP_001559453.1 CDS Cphy_2353 NC_010001.1 2906185 2907177 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: csc:Csac_0443 alanine racemase; LacI family transcriptional regulator 2906185..2907177 Clostridium phytofermentans ISDg 5745412 YP_001559454.1 CDS Cphy_2354 NC_010001.1 2907502 2907831 R PFAM: Penicillinase repressor; KEGG: cdf:CD0547 penicillin-binding protein repressor; CopY family transcriptional regulator complement(2907502..2907831) Clostridium phytofermentans ISDg 5745413 YP_001559455.1 CDS Cphy_2355 NC_010001.1 2908013 2909308 R KEGG: dsy:DSY0184 hypothetical protein; ATPase AAA complement(2908013..2909308) Clostridium phytofermentans ISDg 5745414 YP_001559456.1 CDS Cphy_2356 NC_010001.1 2909309 2910250 R KEGG: pth:PTH_1818 pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(2909309..2910250) Clostridium phytofermentans ISDg 5745415 YP_001559457.1 CDS Cphy_2357 NC_010001.1 2910362 2910886 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(2910362..2910886) Clostridium phytofermentans ISDg 5745416 YP_001559458.1 CDS Cphy_2358 NC_010001.1 2910893 2911996 R PFAM: 3-dehydroquinate synthase; KEGG: cth:Cthe_0786 3-dehydroquinate synthase; 3-dehydroquinate synthase complement(2910893..2911996) Clostridium phytofermentans ISDg 5745417 YP_001559459.1 CDS Cphy_2359 NC_010001.1 2912011 2912949 R PFAM: DivIVA family protein; KEGG: csc:Csac_1911 DivIVA family protein; DivIVA family protein complement(2912011..2912949) Clostridium phytofermentans ISDg 5745418 YP_001559460.1 CDS Cphy_2360 NC_010001.1 2912962 2913753 R PFAM: RNA-binding S4 domain protein; KEGG: cdf:CD2620 RNA-binding cell division protein; RNA-binding S4 domain-containing protein complement(2912962..2913753) Clostridium phytofermentans ISDg 5745419 YP_001559461.1 CDS Cphy_2361 NC_010001.1 2914032 2914652 R PFAM: protein of unknown function DUF552; KEGG: ssp:SSP1582 hypothetical protein; hypothetical protein complement(2914032..2914652) Clostridium phytofermentans ISDg 5745420 YP_001559462.1 CDS Cphy_2362 NC_010001.1 2914674 2915435 R PFAM: alanine racemase domain protein; KEGG: cth:Cthe_0792 protein of unknown function UPF0001; alanine racemase complement(2914674..2915435) Clostridium phytofermentans ISDg 5745421 YP_001559463.1 CDS Cphy_2363 NC_010001.1 2915508 2916896 R KEGG: tte:TTE1601 membrane-fusion protein; hypothetical protein complement(2915508..2916896) Clostridium phytofermentans ISDg 5745422 YP_001559464.1 CDS Cphy_2364 NC_010001.1 2917000 2917203 D PFAM: protein of unknown function DUF378; KEGG: cbf:CLI_0507 hypothetical protein; hypothetical protein 2917000..2917203 Clostridium phytofermentans ISDg 5745423 YP_001559465.1 CDS Cphy_2365 NC_010001.1 2917459 2917923 R KEGG: amt:Amet_3681 hypothetical protein; hypothetical protein complement(2917459..2917923) Clostridium phytofermentans ISDg 5745424 YP_001559466.1 CDS Cphy_2366 NC_010001.1 2918029 2919057 R PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: tte:TTE0925 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase complement(2918029..2919057) Clostridium phytofermentans ISDg 5745425 YP_001559467.1 CDS Cphy_2367 NC_010001.1 2919035 2919436 R KEGG: csc:Csac_1874 methylglyoxal synthase; TIGRFAM: methylglyoxal synthase; PFAM: MGS domain protein; methylglyoxal synthase complement(2919035..2919436) Clostridium phytofermentans ISDg 5745426 YP_001559468.1 CDS Cphy_2368 NC_010001.1 2919458 2920627 R PFAM: cell cycle protein; KEGG: cbf:CLI_0695 rod shape-determining protein RodA; cell cycle protein complement(2919458..2920627) Clostridium phytofermentans ISDg 5745427 YP_001559469.1 CDS Cphy_2369 NC_010001.1 2920640 2920912 R TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: csc:Csac_1872 cell division topological specificity factor MinE; cell division topological specificity factor MinE complement(2920640..2920912) Clostridium phytofermentans ISDg 5745428 YP_001559470.1 CDS Cphy_2370 NC_010001.1 2920926 2921708 R TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cth:Cthe_0093 septum site-determining protein MinD; septum site-determining protein MinD complement(2920926..2921708) Clostridium phytofermentans ISDg 5745429 YP_001559471.1 CDS Cphy_2371 NC_010001.1 2921784 2922449 R TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: csc:Csac_1870 septum site-determining protein MinC; septum site-determining protein MinC complement(2921784..2922449) Clostridium phytofermentans ISDg 5742441 YP_001559472.1 CDS Cphy_2372 NC_010001.1 2922529 2925378 R PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: csc:Csac_1869 peptidoglycan glycosyltransferase; penicillin-binding protein transpeptidase complement(2922529..2925378) Clostridium phytofermentans ISDg 5742442 YP_001559473.1 CDS Cphy_2373 NC_010001.1 2925378 2925887 R KEGG: cth:Cthe_0090 hypothetical protein; hypothetical protein complement(2925378..2925887) Clostridium phytofermentans ISDg 5742443 YP_001559474.1 CDS Cphy_2374 NC_010001.1 2925917 2926777 R TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: cth:Cthe_0089 rod shape-determining protein MreC; rod shape-determining protein MreC complement(2925917..2926777) Clostridium phytofermentans ISDg 5742444 YP_001559475.1 CDS Cphy_2375 NC_010001.1 2927022 2928047 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(2927022..2928047) Clostridium phytofermentans ISDg 5742445 YP_001559476.1 CDS Cphy_2376 NC_010001.1 2928106 2928804 R PFAM: DNA repair protein RadC; KEGG: cbh:CLC_2900 DNA repair protein, RadC family; DNA repair protein RadC complement(2928106..2928804) Clostridium phytofermentans ISDg 5742446 YP_001559477.1 CDS Cphy_2377 NC_010001.1 2928840 2929115 R KEGG: tte:TTE0895 hypothetical protein; hypothetical protein complement(2928840..2929115) Clostridium phytofermentans ISDg 5742447 YP_001559478.1 CDS Cphy_2378 NC_010001.1 2929296 2930600 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; Aluminium resistance family protein; KEGG: cth:Cthe_0794 aluminium resistance protein; aluminum resistance protein complement(2929296..2930600) Clostridium phytofermentans ISDg 5742448 YP_001559479.1 CDS miaA NC_010001.1 2930644 2931585 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(2930644..2931585) Clostridium phytofermentans ISDg 5742449 YP_001559480.1 CDS Cphy_2380 NC_010001.1 2931648 2933735 R TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: cth:Cthe_0776 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL complement(2931648..2933735) Clostridium phytofermentans ISDg 5742450 YP_001559481.1 CDS Cphy_2381 NC_010001.1 2933768 2936566 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(2933768..2936566) Clostridium phytofermentans ISDg 5742451 YP_001559482.1 CDS Cphy_2382 NC_010001.1 2936645 2937121 R PFAM: ribonuclease H; KEGG: esa:ESA_03125 hypothetical protein; ribonuclease H complement(2936645..2937121) Clostridium phytofermentans ISDg 5742452 YP_001559483.1 CDS Cphy_2383 NC_010001.1 2937149 2938825 R PFAM: DNA mismatch repair protein MutS domain protein; KEGG: cpr:CPR_0886 MutS domain V protein; DNA mismatch repair protein MutS domain-containing protein complement(2937149..2938825) Clostridium phytofermentans ISDg 5742453 YP_001559484.1 CDS Cphy_2384 NC_010001.1 2939254 2940348 R PFAM: NLP/P60 protein; SH3 type 3 domain protein; KEGG: csc:Csac_1052 NLP/P60 protein; NLP/P60 protein complement(2939254..2940348) Clostridium phytofermentans ISDg 5742454 YP_001559485.1 CDS Cphy_2385 NC_010001.1 2940819 2942294 R TIGRFAM: stage IV sporulation protein A; PFAM: Sporulation stage IV protein A; KEGG: cth:Cthe_1021 stage IV sporulation protein A; stage IV sporulation protein A complement(2940819..2942294) Clostridium phytofermentans ISDg 5742455 YP_001559486.1 CDS Cphy_2386 NC_010001.1 2942359 2942988 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(2942359..2942988) Clostridium phytofermentans ISDg 5742456 YP_001559487.1 CDS Cphy_2387 NC_010001.1 2943024 2943665 R PFAM: Ribose/galactose isomerase; KEGG: cac:CAC2606 hypothetical protein; hypothetical protein complement(2943024..2943665) Clostridium phytofermentans ISDg 5742457 YP_001559488.1 CDS gpsA NC_010001.1 2943682 2944686 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(2943682..2944686) Clostridium phytofermentans ISDg 5742458 YP_001559489.1 CDS Cphy_2389 NC_010001.1 2944741 2945370 R PFAM: protein of unknown function DUF205; KEGG: cdf:CD2631 hypothetical protein; hypothetical protein complement(2944741..2945370) Clostridium phytofermentans ISDg 5742459 YP_001559490.1 CDS engA NC_010001.1 2945392 2946717 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2945392..2946717) Clostridium phytofermentans ISDg 5742460 YP_001559491.1 CDS Cphy_2391 NC_010001.1 2946866 2948218 R PFAM: protein of unknown function DUF512; KEGG: cth:Cthe_1025 protein of unknown function DUF512; hypothetical protein complement(2946866..2948218) Clostridium phytofermentans ISDg 5742461 YP_001559492.1 CDS Cphy_2392 NC_010001.1 2948617 2949789 D PFAM: periplasmic binding protein; KEGG: dsy:DSY3874 hypothetical protein; periplasmic binding protein 2948617..2949789 Clostridium phytofermentans ISDg 5742462 YP_001559493.1 CDS Cphy_2393 NC_010001.1 2949786 2950859 D PFAM: transport system permease; ABC-3 protein; KEGG: bpu:BPUM_3521 iron (Fe) ABC superfamily ATP binding cassette transporter, membrane protein; transport system permease 2949786..2950859 Clostridium phytofermentans ISDg 5742463 YP_001559494.1 CDS Cphy_2394 NC_010001.1 2950852 2951610 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VPA1652 ATP-binding component of citrate-dependent iron(III) transport protein; ABC transporter 2950852..2951610 Clostridium phytofermentans ISDg 5742464 YP_001559495.1 CDS Cphy_2395 NC_010001.1 2951678 2952850 D Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 2951678..2952850 Clostridium phytofermentans ISDg 5742465 YP_001559496.1 CDS Cphy_2396 NC_010001.1 2952992 2953633 D PFAM: protein of unknown function DUF204; KEGG: cno:NT01CX_0960 hypothetical protein; hypothetical protein 2952992..2953633 Clostridium phytofermentans ISDg 5742466 YP_001559497.1 CDS Cphy_2397 NC_010001.1 2953967 2954848 R PFAM: protein of unknown function DUF152; KEGG: cth:Cthe_0911 protein of unknown function DUF152; hypothetical protein complement(2953967..2954848) Clostridium phytofermentans ISDg 5742467 YP_001559498.1 CDS Cphy_2398 NC_010001.1 2954968 2955324 R PFAM: protein of unknown function UPF0102; KEGG: cdf:CD1271 hypothetical protein; hypothetical protein complement(2954968..2955324) Clostridium phytofermentans ISDg 5742468 YP_001559499.1 CDS Cphy_2399 NC_010001.1 2955317 2955685 R KEGG: csc:Csac_2149 cytoplasmic domain of flagellar protein FhlB-like protein; flagellar protein FhlB-like protein complement(2955317..2955685) Clostridium phytofermentans ISDg 5742469 YP_001559500.1 CDS rnhB NC_010001.1 2955849 2956613 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(2955849..2956613) Clostridium phytofermentans ISDg 5742470 YP_001559501.1 CDS Cphy_2401 NC_010001.1 2956618 2957496 R PFAM: GTP-binding protein HSR1-related; KEGG: cth:Cthe_0763 GTP-binding protein; GTP-binding protein HSR1-related complement(2956618..2957496) Clostridium phytofermentans ISDg 5742471 YP_001559502.1 CDS Cphy_2402 NC_010001.1 2957572 2958216 R TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: ckl:CKL_1407 hypothetical protein; signal peptidase I complement(2957572..2958216) Clostridium phytofermentans ISDg 5742472 YP_001559503.1 CDS rplS NC_010001.1 2958590 2958937 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(2958590..2958937) Clostridium phytofermentans ISDg 5742473 YP_001559504.1 CDS Cphy_2404 NC_010001.1 2959258 2960580 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: cpe:CPE1484 hypothetical protein; MATE efflux family protein complement(2959258..2960580) Clostridium phytofermentans ISDg 5742474 YP_001559505.1 CDS Cphy_2405 NC_010001.1 2960829 2961656 R KEGG: cdf:CD1256 tRNA (guanine-n(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase complement(2960829..2961656) Clostridium phytofermentans ISDg 5742475 YP_001559506.1 CDS rimM NC_010001.1 2961794 2962303 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(2961794..2962303) Clostridium phytofermentans ISDg 5742476 YP_001559507.1 CDS Cphy_2407 NC_010001.1 2962544 2962774 R KEGG: pth:PTH_1722 predicted RNA binding protein; RNA binding protein complement(2962544..2962774) Clostridium phytofermentans ISDg 5742477 YP_001559508.1 CDS rpsP NC_010001.1 2962791 2963036 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(2962791..2963036) Clostridium phytofermentans ISDg 5742478 YP_001559509.1 CDS Cphy_2409 NC_010001.1 2963227 2964591 R KEGG: cdf:CD1252 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein complement(2963227..2964591) Clostridium phytofermentans ISDg 5742479 YP_001559510.1 CDS Cphy_2410 NC_010001.1 2964691 2965071 R PFAM: helix-turn-helix protein YlxM/p13 family protein; KEGG: ctc:CTC01247 hypothetical protein; helix-turn-helix protein YlxM/p13 family protein complement(2964691..2965071) Clostridium phytofermentans ISDg 5742480 YP_001559511.1 CDS Cphy_2411 NC_010001.1 2965324 2965683 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_3364 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(2965324..2965683) Clostridium phytofermentans ISDg 5742481 YP_001559512.1 CDS Cphy_2412 NC_010001.1 2965828 2966631 R hypothetical protein complement(2965828..2966631) Clostridium phytofermentans ISDg 5742483 YP_001559513.1 CDS Cphy_2413 NC_010001.1 2966698 2967021 R hypothetical protein complement(2966698..2967021) Clostridium phytofermentans ISDg 5742484 YP_001559514.1 CDS Cphy_2414 NC_010001.1 2967035 2968117 R KEGG: pto:PTO0127 transporter; hypothetical protein complement(2967035..2968117) Clostridium phytofermentans ISDg 5742485 YP_001559515.1 CDS Cphy_2415 NC_010001.1 2968345 2969244 D KEGG: sma:SAV6238 hypothetical protein; hypothetical protein 2968345..2969244 Clostridium phytofermentans ISDg 5742486 YP_001559516.1 CDS Cphy_2416 NC_010001.1 2969331 2970092 R PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: cac:CAC0851 ortholog YgiD E.coli; extradiol ring-cleavage dioxygenase class III protein subunit B complement(2969331..2970092) Clostridium phytofermentans ISDg 5742487 YP_001559517.1 CDS Cphy_2417 NC_010001.1 2970301 2971149 R PFAM: GCN5-related N-acetyltransferase; KEGG: cbf:CLI_1070 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(2970301..2971149) Clostridium phytofermentans ISDg 5742488 YP_001559518.1 CDS Cphy_2418 NC_010001.1 2971306 2972706 R PFAM: Aldehyde Dehydrogenase_; KEGG: cbe:Cbei_2282 aldehyde dehydrogenase; aldehyde dehydrogenase complement(2971306..2972706) Clostridium phytofermentans ISDg 5742489 YP_001559519.1 CDS Cphy_2419 NC_010001.1 2973301 2973690 D KEGG: amt:Amet_3947 hypothetical protein; hypothetical protein 2973301..2973690 Clostridium phytofermentans ISDg 5742490 YP_001559520.1 CDS Cphy_2420 NC_010001.1 2973710 2974153 D KEGG: cpf:CPF_0333 hypothetical protein; hypothetical protein 2973710..2974153 Clostridium phytofermentans ISDg 5742491 YP_001559521.1 CDS Cphy_2421 NC_010001.1 2974606 2974827 D KEGG: amt:Amet_3944 membrane protein; membrane protein 2974606..2974827 Clostridium phytofermentans ISDg 5742492 YP_001559522.1 CDS Cphy_2422 NC_010001.1 2974984 2975700 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: lbl:LBL_2334 rRNA methylase; tRNA/rRNA methyltransferase SpoU complement(2974984..2975700) Clostridium phytofermentans ISDg 5742493 YP_001559523.1 CDS Cphy_2423 NC_010001.1 2975784 2976674 R KEGG: cbe:Cbei_2773 hypothetical protein; hypothetical protein complement(2975784..2976674) Clostridium phytofermentans ISDg 5742494 YP_001559524.1 CDS Cphy_2424 NC_010001.1 2976818 2977018 D PFAM: helix-turn-helix domain protein; KEGG: cbe:Cbei_3549 transcriptional regulator, XRE family; XRE family transcriptional regulator 2976818..2977018 Clostridium phytofermentans ISDg 5742495 YP_001559525.1 CDS Cphy_2425 NC_010001.1 2977063 2977500 D KEGG: dsy:DSY0156 hypothetical protein; hypothetical protein 2977063..2977500 Clostridium phytofermentans ISDg 5742496 YP_001559526.1 CDS Cphy_2426 NC_010001.1 2977634 2977888 R hypothetical protein complement(2977634..2977888) Clostridium phytofermentans ISDg 5742497 YP_001559527.1 CDS Cphy_2427 NC_010001.1 2977852 2978220 R hypothetical protein complement(2977852..2978220) Clostridium phytofermentans ISDg 5742498 YP_001559528.1 CDS Cphy_2428 NC_010001.1 2978265 2979665 R PFAM: Ig domain protein group 2 domain protein; SMART: transglutaminase domain protein; KEGG: bcz:BCZK0884 S-layer protein; Ig domain-containing protein complement(2978265..2979665) Clostridium phytofermentans ISDg 5742499 YP_001559529.1 CDS Cphy_2429 NC_010001.1 2980255 2982114 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0397 ABC transporter related protein; ABC transporter complement(2980255..2982114) Clostridium phytofermentans ISDg 5742500 YP_001559530.1 CDS Cphy_2430 NC_010001.1 2982111 2983838 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0396 ABC transporter related protein; ABC transporter complement(2982111..2983838) Clostridium phytofermentans ISDg 5742501 YP_001559531.1 CDS Cphy_2431 NC_010001.1 2984205 2985104 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cac:CAC2394 transcriptional regulator, LysR family; LysR family transcriptional regulator 2984205..2985104 Clostridium phytofermentans ISDg 5742502 YP_001559532.1 CDS Cphy_2432 NC_010001.1 2985305 2986585 R KEGG: pna:Pnap_4854 hypothetical protein; hypothetical protein complement(2985305..2986585) Clostridium phytofermentans ISDg 5742503 YP_001559533.1 CDS Cphy_2433 NC_010001.1 2987162 2988574 R PFAM: pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: cth:Cthe_0701 conserved carboxylase region containing protein; oxaloacetate decarboxylase complement(2987162..2988574) Clostridium phytofermentans ISDg 5742504 YP_001559534.1 CDS Cphy_2434 NC_010001.1 2988701 2989783 R KEGG: csc:Csac_2482 sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; sodium ion-translocating decarboxylase subunit beta complement(2988701..2989783) Clostridium phytofermentans ISDg 5742505 YP_001559535.1 CDS Cphy_2435 NC_010001.1 2989885 2990289 R PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cth:Cthe_0700 biotin/lipoyl attachment protein; biotin/lipoyl attachment domain-containing protein complement(2989885..2990289) Clostridium phytofermentans ISDg 5742506 YP_001559536.1 CDS Cphy_2436 NC_010001.1 2990309 2990644 R PFAM: sodium pump decarboxylase gamma subunit; sodium pump decarboxylase gamma subunit complement(2990309..2990644) Clostridium phytofermentans ISDg 5742507 YP_001559537.1 CDS Cphy_2437 NC_010001.1 2990661 2992094 R PFAM: carboxyl transferase; KEGG: cth:Cthe_0699 carboxyl transferase; propionyl-CoA carboxylase complement(2990661..2992094) Clostridium phytofermentans ISDg 5742508 YP_001559538.1 CDS Cphy_2438 NC_010001.1 2992459 2993100 R PFAM: regulatory protein RecX; KEGG: cbe:Cbei_2402 regulatory protein RecX; regulatory protein RecX complement(2992459..2993100) Clostridium phytofermentans ISDg 5742509 YP_001559539.1 CDS Cphy_2439 NC_010001.1 2993104 2994147 R KEGG: cth:Cthe_1050 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein complement(2993104..2994147) Clostridium phytofermentans ISDg 5742510 YP_001559540.1 CDS Cphy_2440 NC_010001.1 2994740 2994916 D PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cbe:Cbei_3056 BFD domain protein (2Fe-2S)-binding domain protein; BFD/(2Fe-2S)-binding domain-containing protein 2994740..2994916 Clostridium phytofermentans ISDg 5742511 YP_001559541.1 CDS Cphy_2441 NC_010001.1 2995013 2996233 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(2995013..2996233) Clostridium phytofermentans ISDg 5742512 YP_001559542.1 CDS Cphy_2442 NC_010001.1 2996412 2997344 R KEGG: cth:Cthe_0926 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(2996412..2997344) Clostridium phytofermentans ISDg 5742513 YP_001559543.1 CDS Cphy_2443 NC_010001.1 2997461 3001018 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: cth:Cthe_0927 chromosome segregation protein SMC; chromosome segregation protein SMC complement(2997461..3001018) Clostridium phytofermentans ISDg 5742514 YP_001559544.1 CDS Cphy_2444 NC_010001.1 3001116 3001823 R PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: amt:Amet_2752 ribonuclease III; ribonuclease III complement(3001116..3001823) Clostridium phytofermentans ISDg 5742515 YP_001559545.1 CDS Cphy_2445 NC_010001.1 3002052 3003227 D PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 3002052..3003227 Clostridium phytofermentans ISDg 5742516 YP_001559546.1 CDS acpP NC_010001.1 3003416 3003646 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(3003416..3003646) Clostridium phytofermentans ISDg 5742517 YP_001559547.1 CDS Cphy_2447 NC_010001.1 3003674 3004705 R TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: cno:NT01CX_2221 fatty acid/phospholipid synthesis protein PlsX; fatty acid/phospholipid synthesis protein PlsX complement(3003674..3004705) Clostridium phytofermentans ISDg 5742518 YP_001559548.1 CDS Cphy_2448 NC_010001.1 3005002 3005778 R PFAM: MCP methyltransferase CheR-type; KEGG: csc:Csac_0981 protein-glutamate O-methyltransferase; chemotaxis protein CheR complement(3005002..3005778) Clostridium phytofermentans ISDg 5742519 YP_001559549.1 CDS Cphy_2449 NC_010001.1 3005907 3007838 R TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: RNA binding S1 domain protein; LytB protein; KEGG: cth:Cthe_0714 hydroxymethylbutenyl pyrophosphate reductase; hydroxymethylbutenyl pyrophosphate reductase complement(3005907..3007838) Clostridium phytofermentans ISDg 5742520 YP_001559550.1 CDS Cphy_2450 NC_010001.1 3007980 3008663 R KEGG: csc:Csac_1889 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase complement(3007980..3008663) Clostridium phytofermentans ISDg 5742521 YP_001559551.1 CDS Cphy_2451 NC_010001.1 3008676 3010016 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; KEGG: cno:NT01CX_2094 NAD(FAD)-utilizing dehydrogenase; hypothetical protein complement(3008676..3010016) Clostridium phytofermentans ISDg 5742522 YP_001559552.1 CDS Cphy_2452 NC_010001.1 3010239 3010793 R hypothetical protein complement(3010239..3010793) Clostridium phytofermentans ISDg 5742523 YP_001559553.1 CDS Cphy_2453 NC_010001.1 3010976 3012142 R PFAM: CinA domain protein; KEGG: tte:TTE1375 predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; CinA domain-containing protein complement(3010976..3012142) Clostridium phytofermentans ISDg 5742524 YP_001559554.1 CDS Cphy_2454 NC_010001.1 3012406 3012948 R TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cpr:CPR_1646 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(3012406..3012948) Clostridium phytofermentans ISDg 5742525 YP_001559555.1 CDS Cphy_2455 NC_010001.1 3012965 3014287 R KEGG: tte:TTE1377 2-methylthioadenine synthetase; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme YliG complement(3012965..3014287) Clostridium phytofermentans ISDg 5742526 YP_001559556.1 CDS Cphy_2456 NC_010001.1 3014642 3015490 R PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: cth:Cthe_1093 methenyltetrahydrofolate cyclohydrolase; methylenetetrahydrofolate dehydrogenase complement(3014642..3015490) Clostridium phytofermentans ISDg 5742527 YP_001559557.1 CDS Cphy_2457 NC_010001.1 3015596 3017149 R PFAM: phospholipase D/Transphosphatidylase; KEGG: cpr:CPR_0345 cardiolipin synthetase; phospholipase D/transphosphatidylase complement(3015596..3017149) Clostridium phytofermentans ISDg 5742528 YP_001559558.1 CDS Cphy_2458 NC_010001.1 3017438 3019729 R PFAM: aconitate hydratase domain protein; KEGG: dsy:DSY4204 aconitase A; hypothetical protein complement(3017438..3019729) Clostridium phytofermentans ISDg 5742529 YP_001559559.1 CDS Cphy_2459 NC_010001.1 3019854 3020405 R hypothetical protein complement(3019854..3020405) Clostridium phytofermentans ISDg 5742530 YP_001559560.1 CDS Cphy_2460 NC_010001.1 3020510 3021967 R PFAM: multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_0545 MATE efflux family protein; multi anti extrusion protein MatE complement(3020510..3021967) Clostridium phytofermentans ISDg 5742531 YP_001559561.1 CDS Cphy_2461 NC_010001.1 3022317 3023150 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: amt:Amet_0544 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 3022317..3023150 Clostridium phytofermentans ISDg 5742532 YP_001559562.1 CDS Cphy_2462 NC_010001.1 3023301 3023648 R KEGG: amt:Amet_4322 hypothetical protein; hypothetical protein complement(3023301..3023648) Clostridium phytofermentans ISDg 5742533 YP_001559563.1 CDS Cphy_2463 NC_010001.1 3023803 3024975 R PFAM: iron-containing alcohol dehydrogenase; KEGG: cbf:CLI_1505 NADH-dependent butanol dehydrogenase; iron-containing alcohol dehydrogenase complement(3023803..3024975) Clostridium phytofermentans ISDg 5742534 YP_001559564.1 CDS Cphy_2464 NC_010001.1 3025234 3026121 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_1165 hypothetical protein; binding-protein-dependent transport system inner membrane protein complement(3025234..3026121) Clostridium phytofermentans ISDg 5742535 YP_001559565.1 CDS Cphy_2465 NC_010001.1 3026126 3027100 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_1164 hypothetical protein; binding-protein-dependent transport system inner membrane protein complement(3026126..3027100) Clostridium phytofermentans ISDg 5742536 YP_001559566.1 CDS Cphy_2466 NC_010001.1 3027334 3028755 R PFAM: extracellular solute-binding protein family 1; KEGG: llc:LACR_1435 ABC-type sugar transport system, periplasmic component; extracellular solute-binding protein complement(3027334..3028755) Clostridium phytofermentans ISDg 5742537 YP_001559567.1 CDS Cphy_2467 NC_010001.1 3028826 3029881 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bha:BH1928 transcriptional regulator (LacI family); LacI family transcriptional regulator complement(3028826..3029881) Clostridium phytofermentans ISDg 5742538 YP_001559568.1 CDS Cphy_2468 NC_010001.1 3030540 3031322 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin; sporulation sigma factor SigG complement(3030540..3031322) Clostridium phytofermentans ISDg 5742539 YP_001559569.1 CDS Cphy_2469 NC_010001.1 3031435 3032175 R sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; sporulation sigma factor SigE complement(3031435..3032175) Clostridium phytofermentans ISDg 5742540 YP_001559570.1 CDS Cphy_2470 NC_010001.1 3032193 3033074 R PFAM: peptidase U4 sporulation factor SpoIIGA; KEGG: bpu:BPUM_1425 stage II sporulation U4 family membrane protease; peptidase U4 sporulation factor SpoIIGA complement(3032193..3033074) Clostridium phytofermentans ISDg 5742541 YP_001559571.1 CDS Cphy_2471 NC_010001.1 3033316 3034548 R TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: cth:Cthe_0445 cell division protein FtsZ; cell division protein FtsZ complement(3033316..3034548) Clostridium phytofermentans ISDg 5742542 YP_001559572.1 CDS Cphy_2472 NC_010001.1 3034850 3035599 R KEGG: cbh:CLC_1498 cell division protein FtsQ; hypothetical protein complement(3034850..3035599) Clostridium phytofermentans ISDg 5742543 YP_001559573.1 CDS Cphy_2473 NC_010001.1 3035832 3037088 R TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: tte:TTE1644 UDP-N-acetylglucosamine enolpyruvyl transferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3035832..3037088) Clostridium phytofermentans ISDg 5742544 YP_001559574.1 CDS Cphy_2474 NC_010001.1 3037180 3038310 R PFAM: cell cycle protein; KEGG: csc:Csac_0924 cell division protein FtsW; cell cycle protein complement(3037180..3038310) Clostridium phytofermentans ISDg 5742545 YP_001559575.1 CDS Cphy_2475 NC_010001.1 3038345 3039709 R TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: amt:Amet_2881 UDP-N-acetylmuramoylalanine--D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(3038345..3039709) Clostridium phytofermentans ISDg 5742546 YP_001559576.1 CDS Cphy_2476 NC_010001.1 3039871 3041820 R PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: csc:Csac_0919 stage V sporulation protein D; peptidoglycan glycosyltransferase complement(3039871..3041820) Clostridium phytofermentans ISDg 5742547 YP_001559577.1 CDS Cphy_2477 NC_010001.1 3041924 3043879 R PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: tte:TTE1651 Cell division protein FtsI/penicillin-binding protein 2; peptidoglycan glycosyltransferase complement(3041924..3043879) Clostridium phytofermentans ISDg 5742548 YP_001559578.1 CDS Cphy_2478 NC_010001.1 3044190 3044738 R PFAM: Septum formation initiator; septum formation initiator complement(3044190..3044738) Clostridium phytofermentans ISDg 5742549 YP_001559579.1 CDS mraW NC_010001.1 3044855 3045808 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: cac:CAC2132 S-adenosyl-methyltransferase; S-adenosyl-methyltransferase MraW complement(3044855..3045808) Clostridium phytofermentans ISDg 5742550 YP_001559580.1 CDS Cphy_2480 NC_010001.1 3045859 3046284 R TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: tte:TTE1654 MraZ protein; MraZ protein complement(3045859..3046284) Clostridium phytofermentans ISDg 5742551 YP_001559581.1 CDS Cphy_2481 NC_010001.1 3046629 3047546 R PFAM: prolipoprotein diacylglyceryl transferase; KEGG: csc:Csac_0915 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase complement(3046629..3047546) Clostridium phytofermentans ISDg 5742552 YP_001559582.1 CDS Cphy_2482 NC_010001.1 3047565 3048662 R TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein HSR1-related; Protein of unknown function DUF933; KEGG: csc:Csac_1719 GTP-binding protein YchF; GTP-binding protein YchF complement(3047565..3048662) Clostridium phytofermentans ISDg 5742553 YP_001559583.1 CDS Cphy_2483 NC_010001.1 3048771 3049421 R TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; Thiamin pyrophosphokinase vitamin B1-binding region; KEGG: ctc:CTC01228 thiamin pyrophosphokinase; thiamine pyrophosphokinase complement(3048771..3049421) Clostridium phytofermentans ISDg 5742554 YP_001559584.1 CDS Cphy_2484 NC_010001.1 3049599 3050261 R PFAM: ribulose-phosphate 3-epimerase; KEGG: cbe:Cbei_1153 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(3049599..3050261) Clostridium phytofermentans ISDg 5742555 YP_001559585.1 CDS Cphy_2485 NC_010001.1 3050579 3051454 R TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: amt:Amet_2778 ribosome small subunit-dependent GTPase A; ribosome small subunit-dependent GTPase A complement(3050579..3051454) Clostridium phytofermentans ISDg 5742556 YP_001559586.1 CDS Cphy_2486 NC_010001.1 3051547 3053694 R PFAM: protein of unknown function RIO1; protein kinase; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; KEGG: csc:Csac_2076 protein kinase; serine/threonine protein kinase with PASTA sensor(s) complement(3051547..3053694) Clostridium phytofermentans ISDg 5742557 YP_001559587.1 CDS Cphy_2487 NC_010001.1 3053814 3054539 R PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: cth:Cthe_0573 protein serine/threonine phosphatases; Ser/Thr phosphatase complement(3053814..3054539) Clostridium phytofermentans ISDg 5742558 YP_001559588.1 CDS Cphy_2488 NC_010001.1 3054541 3055611 R TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: cpr:CPR_1711 radical SAM enzyme, Cfr family; radical SAM protein complement(3054541..3055611) Clostridium phytofermentans ISDg 5742559 YP_001559589.1 CDS Cphy_2489 NC_010001.1 3055741 3057102 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: cth:Cthe_0571 sun protein; sun protein complement(3055741..3057102) Clostridium phytofermentans ISDg 5742560 YP_001559590.1 CDS Cphy_2490 NC_010001.1 3057124 3057849 R PFAM: peptidase membrane zinc metallopeptidase KEGG: efa:EF2210 hypothetical protein; peptidase membrane zinc metallopeptidase complement(3057124..3057849) Clostridium phytofermentans ISDg 5742561 YP_001559591.1 CDS Cphy_2491 NC_010001.1 3058190 3059149 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: cdf:CD2584 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(3058190..3059149) Clostridium phytofermentans ISDg 5742562 YP_001559592.1 CDS def NC_010001.1 3059161 3059652 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(3059161..3059652) Clostridium phytofermentans ISDg 5742563 YP_001559593.1 CDS Cphy_2493 NC_010001.1 3059669 3062047 R KEGG: tte:TTE1508 Primosomal protein N (replication factor Y) - superfamily II helicase; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; primosomal protein N' complement(3059669..3062047) Clostridium phytofermentans ISDg 5742564 YP_001559594.1 CDS Cphy_2494 NC_010001.1 3062079 3063602 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dsy:DSY3693 hypothetical protein; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase complement(3062079..3063602) Clostridium phytofermentans ISDg 5742565 YP_001559595.1 CDS Cphy_2495 NC_010001.1 3063638 3065119 R TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cth:Cthe_0978 UDP-N-acetylmuramyl-tripeptide synthetases; UDP-N-acetylmuramyl tripeptide synthetase complement(3063638..3065119) Clostridium phytofermentans ISDg 5742566 YP_001559596.1 CDS Cphy_2496 NC_010001.1 3065489 3066925 R TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: drm:Dred_1457 glycogen/starch synthases, ADP-glucose type; glycogen/starch synthase complement(3065489..3066925) Clostridium phytofermentans ISDg 5742567 YP_001559597.1 CDS Cphy_2497 NC_010001.1 3067044 3067844 R TIGRFAM: sporulation transcription factor Spo0A; PFAM: response regulator receiver; Sporulation initiation factor Spo0A; KEGG: cth:Cthe_0812 response regulator receiver protein; sporulation transcriptional activator Spo0A complement(3067044..3067844) Clostridium phytofermentans ISDg 5742568 YP_001559598.1 CDS Cphy_2498 NC_010001.1 3068402 3069739 R KEGG: amt:Amet_2512 peptidase S55, sporulation stage IV, protein B; TIGRFAM: stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB; SMART: PDZ/DHR/GLGF domain protein; stage IV sporulation protein B complement(3068402..3069739) Clostridium phytofermentans ISDg 5742569 YP_001559599.1 CDS Cphy_2499 NC_010001.1 3069975 3071660 R TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: cth:Cthe_0814 DNA repair protein RecN; DNA repair protein RecN complement(3069975..3071660) Clostridium phytofermentans ISDg 5742570 YP_001559600.1 CDS Cphy_2500 NC_010001.1 3071949 3075851 R PFAM: Ig domain protein group 2 domain protein; KEGG: cth:Cthe_0056 Ig-like, group 2; Ig domain-containing protein complement(3071949..3075851) Clostridium phytofermentans ISDg 5742571 YP_001559601.1 CDS Cphy_2501 NC_010001.1 3076377 3076847 D hypothetical protein 3076377..3076847 Clostridium phytofermentans ISDg 5742572 YP_001559602.1 CDS Cphy_2502 NC_010001.1 3076928 3077176 D KEGG: cdf:CD0476 hypothetical protein; hypothetical protein 3076928..3077176 Clostridium phytofermentans ISDg 5742573 YP_001559603.1 CDS Cphy_2503 NC_010001.1 3077391 3077969 D PFAM: Chloramphenicol phosphotransferase family protein; KEGG: sma:SAV787 hypothetical protein; chloramphenicol phosphotransferase family protein 3077391..3077969 Clostridium phytofermentans ISDg 5742574 YP_001559604.1 CDS Cphy_2504 NC_010001.1 3078108 3078674 R hypothetical protein complement(3078108..3078674) Clostridium phytofermentans ISDg 5742575 YP_001559605.1 CDS Cphy_2505 NC_010001.1 3078788 3078985 R KEGG: ckl:CKL_0484 hypothetical protein; hypothetical protein complement(3078788..3078985) Clostridium phytofermentans ISDg 5742576 YP_001559606.1 CDS Cphy_2506 NC_010001.1 3079473 3080222 R KEGG: btl:BALH_1130 hypothetical protein; hypothetical protein complement(3079473..3080222) Clostridium phytofermentans ISDg 5742577 YP_001559607.1 CDS Cphy_2507 NC_010001.1 3080711 3081439 R PFAM: protein of unknown function DUF28; KEGG: cth:Cthe_2075 protein of unknown function DUF28; hypothetical protein complement(3080711..3081439) Clostridium phytofermentans ISDg 5742578 YP_001559608.1 CDS Cphy_2508 NC_010001.1 3081623 3082081 R PFAM: arginine repressor; KEGG: csc:Csac_1897 arginine repressor, ArgR; arginine repressor ArgR complement(3081623..3082081) Clostridium phytofermentans ISDg 5742579 YP_001559609.1 CDS Cphy_2509 NC_010001.1 3082103 3082960 R PFAM: ATP-NAD/AcoX kinase; KEGG: cth:Cthe_0816 NAD(+) kinase; ATP-NAD/AcoX kinase complement(3082103..3082960) Clostridium phytofermentans ISDg 5742580 YP_001559610.1 CDS Cphy_2510 NC_010001.1 3083087 3083887 R TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: cdf:CD1208 RNA methyltransferase; hemolysin A complement(3083087..3083887) Clostridium phytofermentans ISDg 5742581 YP_001559611.1 CDS Cphy_2511 NC_010001.1 3083993 3085870 R TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: amt:Amet_2508 deoxyxylulose-5-phosphate synthase; deoxyxylulose-5-phosphate synthase complement(3083993..3085870) Clostridium phytofermentans ISDg 5742582 YP_001559612.1 CDS Cphy_2512 NC_010001.1 3085890 3086897 R PFAM: Polyprenyl synthetase; KEGG: cdf:CD1205 geranyltranstransferase; polyprenyl synthetase complement(3085890..3086897) Clostridium phytofermentans ISDg 5742583 YP_001559613.1 CDS Cphy_2513 NC_010001.1 3086922 3087137 R PFAM: Exonuclease VII small subunit; KEGG: efa:EF0980 exodeoxyribonuclease VII, small subunit; exonuclease VII small subunit complement(3086922..3087137) Clostridium phytofermentans ISDg 5742584 YP_001559614.1 CDS Cphy_2514 NC_010001.1 3087152 3088357 R KEGG: gka:GK2395 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit complement(3087152..3088357) Clostridium phytofermentans ISDg 5742585 YP_001559615.1 CDS Cphy_2515 NC_010001.1 3088425 3088823 R TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: amt:Amet_2501 NusB antitermination factor; NusB antitermination factor complement(3088425..3088823) Clostridium phytofermentans ISDg 5742586 YP_001559616.1 CDS Cphy_2516 NC_010001.1 3088975 3089367 R PFAM: protein of unknown function DUF322; KEGG: amt:Amet_2500 protein of unknown function DUF322; hypothetical protein complement(3088975..3089367) Clostridium phytofermentans ISDg 5742587 YP_001559617.1 CDS Cphy_2517 NC_010001.1 3089660 3090421 R KEGG: cth:Cthe_0838 hypothetical protein; hypothetical protein complement(3089660..3090421) Clostridium phytofermentans ISDg 5742588 YP_001559618.1 CDS Cphy_2518 NC_010001.1 3090485 3091204 R KEGG: cth:Cthe_0839 stage III sporulation protein AG; hypothetical protein complement(3090485..3091204) Clostridium phytofermentans ISDg 5742589 YP_001559619.1 CDS Cphy_2519 NC_010001.1 3091188 3091859 R KEGG: cth:Cthe_0840 hypothetical protein; hypothetical protein complement(3091188..3091859) Clostridium phytofermentans ISDg 5742590 YP_001559620.1 CDS Cphy_2520 NC_010001.1 3091880 3093022 R KEGG: amt:Amet_2496 sporulation stage III, protein AE; sporulation stage III, protein AE complement(3091880..3093022) Clostridium phytofermentans ISDg 5742591 YP_001559621.1 CDS Cphy_2521 NC_010001.1 3093041 3093460 R TIGRFAM: stage III sporulation protein AD; PFAM: Sporulation stage III protein AD; KEGG: amt:Amet_2495 sporulation stage III, protein AD; stage III sporulation protein AD complement(3093041..3093460) Clostridium phytofermentans ISDg 5742592 YP_001559622.1 CDS Cphy_2522 NC_010001.1 3093549 3093701 R KEGG: cdf:CD1194 stage III sporulation protein AC; stage III sporulation protein AC complement(3093549..3093701) Clostridium phytofermentans ISDg 5742593 YP_001559623.1 CDS Cphy_2523 NC_010001.1 3093757 3094287 R KEGG: cth:Cthe_0844 stage III sporulation protein spoIIIAB; hypothetical protein complement(3093757..3094287) Clostridium phytofermentans ISDg 5742594 YP_001559624.1 CDS Cphy_2524 NC_010001.1 3094308 3095276 R TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase; KEGG: pth:PTH_1166 hypothetical protein; stage III sporulation protein AA complement(3094308..3095276) Clostridium phytofermentans ISDg 5742595 YP_001559625.1 CDS Cphy_2525 NC_010001.1 3095595 3096365 D PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: cno:NT01CX_0621 shikimate 5-dehydrogenase; shikimate dehydrogenase 3095595..3096365 Clostridium phytofermentans ISDg 5742596 YP_001559626.1 CDS Cphy_2526 NC_010001.1 3096736 3097287 D PFAM: transcriptional regulator PadR family protein; KEGG: cdf:CD3209 PadR-family transcriptional regulator; PadR-like family transcriptional regulator 3096736..3097287 Clostridium phytofermentans ISDg 5742597 YP_001559627.1 CDS Cphy_2527 NC_010001.1 3097284 3097676 D hypothetical protein 3097284..3097676 Clostridium phytofermentans ISDg 5742598 YP_001559628.1 CDS Cphy_2528 NC_010001.1 3097694 3098092 D hypothetical protein 3097694..3098092 Clostridium phytofermentans ISDg 5742599 YP_001559629.1 CDS Cphy_2529 NC_010001.1 3098151 3098708 R TIGRFAM: translation elongation factor P; PFAM: Elongation factor P/YeiP protein; Elongation factor KOW domain protein; Elongation factor P; KEGG: cth:Cthe_0847 translation elongation factor P; translation elongation factor P complement(3098151..3098708) Clostridium phytofermentans ISDg 5742600 YP_001559630.1 CDS Cphy_2530 NC_010001.1 3098932 3099993 R PFAM: creatinase; peptidase M24; KEGG: tte:TTE1280 Xaa-Pro aminopeptidase; peptidase M24 complement(3098932..3099993) Clostridium phytofermentans ISDg 5742601 YP_001559631.1 CDS Cphy_2531 NC_010001.1 3100150 3100587 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(3100150..3100587) Clostridium phytofermentans ISDg 5742602 YP_001559632.1 CDS Cphy_2532 NC_010001.1 3100611 3101132 R PFAM: shikimate kinase; KEGG: amt:Amet_0651 chorismate mutase; shikimate kinase complement(3100611..3101132) Clostridium phytofermentans ISDg 5742603 YP_001559633.1 CDS Cphy_2533 NC_010001.1 3101143 3101658 R TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; PFAM: HAD-superfamily phosphatase subfamily IIIA; KEGG: cth:Cthe_0855 HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; HAD family phosphatase complement(3101143..3101658) Clostridium phytofermentans ISDg 5742604 YP_001559634.1 CDS Cphy_2534 NC_010001.1 3102399 3103187 D Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 3102399..3103187 Clostridium phytofermentans ISDg 5742605 YP_001559635.1 CDS Cphy_2535 NC_010001.1 3103356 3104270 R PFAM: Aldose 1-epimerase; KEGG: tva:TVAG_202440 Aldose 1-epimerase family protein Pfam: Aldose_epim; aldose 1-epimerase complement(3103356..3104270) Clostridium phytofermentans ISDg 5742606 YP_001559636.1 CDS Cphy_2536 NC_010001.1 3104290 3105003 R PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: tte:TTE2700 predicted glutamine amidotransferases; peptidase C26 complement(3104290..3105003) Clostridium phytofermentans ISDg 5742607 YP_001559637.1 CDS Cphy_2537 NC_010001.1 3105417 3107510 R TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; Miro domain protein; KEGG: cth:Cthe_1794 translation elongation factor G; small GTP-binding protein complement(3105417..3107510) Clostridium phytofermentans ISDg 5742608 YP_001559638.1 CDS Cphy_2538 NC_010001.1 3107946 3108959 D TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: cth:Cthe_1795 phospho-2-dehydro-3-deoxyheptonate aldolase; phospho-2-dehydro-3-deoxyheptonate aldolase 3107946..3108959 Clostridium phytofermentans ISDg 5742609 YP_001559639.1 CDS Cphy_2539 NC_010001.1 3108976 3110085 D PFAM: amino acid-binding ACT domain protein; Prephenate dehydrogenase; KEGG: cth:Cthe_1796 prephenate dehydrogenase; prephenate dehydrogenase 3108976..3110085 Clostridium phytofermentans ISDg 5742610 YP_001559640.1 CDS Cphy_2540 NC_010001.1 3110347 3111657 D TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: bcy:Bcer98_1242 3-phosphoshikimate 1-carboxyvinyltransferase; 3-phosphoshikimate 1-carboxyvinyltransferase 3110347..3111657 Clostridium phytofermentans ISDg 5741818 YP_001559641.1 CDS Cphy_2541 NC_010001.1 3111870 3112358 R hypothetical protein complement(3111870..3112358) Clostridium phytofermentans ISDg 5741819 YP_001559642.1 CDS Cphy_2542 NC_010001.1 3112655 3113005 R PFAM: Peptidoglycan-binding LysM; peptidoglycan-binding LysM complement(3112655..3113005) Clostridium phytofermentans ISDg 5741820 YP_001559643.1 CDS Cphy_2543 NC_010001.1 3113407 3114021 D KEGG: csc:Csac_2042 SOS-response transcriptional repressor, LexA; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein; LexA family transcriptional regulator 3113407..3114021 Clostridium phytofermentans ISDg 5741821 YP_001559644.1 CDS Cphy_2544 NC_010001.1 3114256 3114618 R TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: pth:PTH_0837 uncharacterized homolog of plant iojap protein; iojap family protein complement(3114256..3114618) Clostridium phytofermentans ISDg 5741822 YP_001559645.1 CDS Cphy_2545 NC_010001.1 3114689 3115279 R PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cno:NT01CX_0074 conserved hypothetical protein TIGR00488; metal dependent phosphohydrolase complement(3114689..3115279) Clostridium phytofermentans ISDg 5741823 YP_001559646.1 CDS Cphy_2546 NC_010001.1 3115305 3115907 R KEGG: pth:PTH_0835 nicotinic acid mononucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(3115305..3115907) Clostridium phytofermentans ISDg 5741824 YP_001559647.1 CDS Cphy_2547 NC_010001.1 3115924 3116214 R PFAM: protein of unknown function UPF0044; KEGG: sar:SAR1672 RNA-binding protein containing KH domain; hypothetical protein complement(3115924..3116214) Clostridium phytofermentans ISDg 5741825 YP_001559648.1 CDS Cphy_2548 NC_010001.1 3116259 3117548 R TIGRFAM: small GTP-binding protein; GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; GTP1/OBG domain protein; KEGG: cth:Cthe_0163 GTP1/OBG subdomain containing protein; GTP-binding protein Obg/CgtA complement(3116259..3117548) Clostridium phytofermentans ISDg 5741826 YP_001559649.1 CDS rpmA NC_010001.1 3117932 3118219 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(3117932..3118219) Clostridium phytofermentans ISDg 5741827 YP_001559650.1 CDS Cphy_2550 NC_010001.1 3118265 3118594 R PFAM: protein of unknown function DUF464; KEGG: lsl:LSL_0955 ribosomal protein; hypothetical protein complement(3118265..3118594) Clostridium phytofermentans ISDg 5741828 YP_001559651.1 CDS rplU NC_010001.1 3118614 3118922 R PFAM: ribosomal protein L21; KEGG: swo:Swol_1613 ribosomal protein L21; 50S ribosomal protein L21 complement(3118614..3118922) Clostridium phytofermentans ISDg 5741829 YP_001559652.1 CDS Cphy_2552 NC_010001.1 3119382 3120035 D PFAM: protein of unknown function DUF45; KEGG: bcz:BCZK0309 conserved hypothetical protein; possible zinc metalloprotease; hypothetical protein 3119382..3120035 Clostridium phytofermentans ISDg 5741830 YP_001559653.1 CDS Cphy_2553 NC_010001.1 3120070 3121041 R KEGG: mac:MA2899 hypothetical protein; hypothetical protein complement(3120070..3121041) Clostridium phytofermentans ISDg 5741831 YP_001559654.1 CDS Cphy_2554 NC_010001.1 3121808 3122647 R TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: csc:Csac_1297 DegV family protein; degV family protein complement(3121808..3122647) Clostridium phytofermentans ISDg 5741832 YP_001559655.1 CDS Cphy_2555 NC_010001.1 3122862 3123311 R PFAM: regulatory protein MarR; KEGG: efa:EF2886 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(3122862..3123311) Clostridium phytofermentans ISDg 5741833 YP_001559656.1 CDS Cphy_2556 NC_010001.1 3123682 3124554 D PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: cdf:CD1883 AraC-family transcriptional regulator; AraC family transcriptional regulator 3123682..3124554 Clostridium phytofermentans ISDg 5741834 YP_001559657.1 CDS Cphy_2557 NC_010001.1 3124680 3125471 R TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cpe:CPE0284 probable transcriptional regulator; cell envelope-related transcriptional attenuator complement(3124680..3125471) Clostridium phytofermentans ISDg 5741835 YP_001559658.1 CDS Cphy_2558 NC_010001.1 3125499 3125909 R hypothetical protein complement(3125499..3125909) Clostridium phytofermentans ISDg 5741836 YP_001559659.1 CDS Cphy_2559 NC_010001.1 3126185 3126736 R KEGG: cth:Cthe_1553 hypothetical protein; hypothetical protein complement(3126185..3126736) Clostridium phytofermentans ISDg 5741837 YP_001559660.1 CDS Cphy_2560 NC_010001.1 3126729 3127163 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cac:CAC3491 protein, related to general stress protein 26(GS26) of B.subtilis (pyridoxinephosphate oxidase family); pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(3126729..3127163) Clostridium phytofermentans ISDg 5741838 YP_001559661.1 CDS Cphy_2561 NC_010001.1 3127160 3127612 R PFAM: regulatory protein MarR; KEGG: tde:TDE1719 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(3127160..3127612) Clostridium phytofermentans ISDg 5741839 YP_001559662.1 CDS Cphy_2562 NC_010001.1 3128084 3128557 R TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bvu:BVU_3047 transcriptional regulator; ybaK/ebsC protein complement(3128084..3128557) Clostridium phytofermentans ISDg 5741840 YP_001559663.1 CDS Cphy_2563 NC_010001.1 3128635 3129849 R TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: drm:Dred_2536 ribonuclease, Rne/Rng family; ribonuclease complement(3128635..3129849) Clostridium phytofermentans ISDg 5741841 YP_001559664.1 CDS Cphy_2564 NC_010001.1 3129934 3130806 R KEGG: cth:Cthe_0157 hypothetical protein; hypothetical protein complement(3129934..3130806) Clostridium phytofermentans ISDg 5741842 YP_001559665.1 CDS Cphy_2565 NC_010001.1 3130923 3132809 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_0156 radical SAM; radical SAM domain-containing protein complement(3130923..3132809) Clostridium phytofermentans ISDg 5741843 YP_001559666.1 CDS Cphy_2566 NC_010001.1 3133025 3133432 R hypothetical protein complement(3133025..3133432) Clostridium phytofermentans ISDg 5741844 YP_001559667.1 CDS Cphy_2567 NC_010001.1 3133582 3135006 R PFAM: glycoside hydrolase family 28; KEGG: bvu:BVU_1985 glycoside hydrolase family 28; glycoside hydrolase family protein complement(3133582..3135006) Clostridium phytofermentans ISDg 5741845 YP_001559668.1 CDS Cphy_2568 NC_010001.1 3135310 3135972 R KEGG: tte:TTE0796 uncharacterized Fe-S protein; Fe-S protein-like protein complement(3135310..3135972) Clostridium phytofermentans ISDg 5741846 YP_001559669.1 CDS Cphy_2569 NC_010001.1 3136132 3137703 R PFAM: extracellular solute-binding protein family 1; KEGG: cpe:CPE1030 multiple sugar/glycerol-3P transport system substrate-binding protein; extracellular solute-binding protein complement(3136132..3137703) Clostridium phytofermentans ISDg 5741847 YP_001559670.1 CDS Cphy_2570 NC_010001.1 3137758 3138693 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0795 multiple sugar transport system permease; binding-protein-dependent transport system inner membrane protein complement(3137758..3138693) Clostridium phytofermentans ISDg 5741848 YP_001559671.1 CDS Cphy_2571 NC_010001.1 3138707 3139672 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2339 ABC transporter, permease; binding-protein-dependent transport system inner membrane protein complement(3138707..3139672) Clostridium phytofermentans ISDg 5741849 YP_001559672.1 CDS Cphy_2572 NC_010001.1 3140149 3141216 D PFAM: glycoside hydrolase family 18; SMART: chitinase II; KEGG: bha:BH0916 chitinase; glycoside hydrolase family protein 3140149..3141216 Clostridium phytofermentans ISDg 5741850 YP_001559673.1 CDS Cphy_2573 NC_010001.1 3141426 3142094 R hypothetical protein complement(3141426..3142094) Clostridium phytofermentans ISDg 5742738 YP_001559674.1 CDS Cphy_2574 NC_010001.1 3142451 3143920 R TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: swo:Swol_0116 lysyl-tRNA synthetase; lysyl-tRNA synthetase complement(3142451..3143920) Clostridium phytofermentans ISDg 5742739 YP_001559675.1 CDS Cphy_2575 NC_010001.1 3144614 3145144 R PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_1438 hypothetical protein; N-acetyltransferase GCN5 complement(3144614..3145144) Clostridium phytofermentans ISDg 5742740 YP_001559676.1 CDS Cphy_2576 NC_010001.1 3145396 3145902 R KEGG: rbe:RBE_0461 acetyltransferase; acetyltransferase complement(3145396..3145902) Clostridium phytofermentans ISDg 5742741 YP_001559677.1 CDS Cphy_2577 NC_010001.1 3146075 3146476 R hypothetical protein complement(3146075..3146476) Clostridium phytofermentans ISDg 5742742 YP_001559678.1 CDS Cphy_2578 NC_010001.1 3146942 3148174 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 3146942..3148174 Clostridium phytofermentans ISDg 5742743 YP_001559679.1 CDS Cphy_2579 NC_010001.1 3148199 3149149 D hypothetical protein 3148199..3149149 Clostridium phytofermentans ISDg 5742744 YP_001559680.1 CDS Cphy_2580 NC_010001.1 3149242 3152451 R KEGG: cth:Cthe_2451 SNF2-related protein; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SNF2 helicase associated domain protein; SMART: DEAD-like helicases; non-specific serine/threonine protein kinase complement(3149242..3152451) Clostridium phytofermentans ISDg 5742745 YP_001559681.1 CDS Cphy_2581 NC_010001.1 3152644 3154335 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: cpf:CPF_1731 sulfate permease, SulP family; sulfate transporter complement(3152644..3154335) Clostridium phytofermentans ISDg 5742746 YP_001559682.1 CDS Cphy_2582 NC_010001.1 3154594 3155883 R PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: cth:Cthe_3179 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase complement(3154594..3155883) Clostridium phytofermentans ISDg 5742747 YP_001559683.1 CDS Cphy_2583 NC_010001.1 3156129 3156698 R TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: cth:Cthe_0688 transcriptional regulator; segregation and condensation protein B complement(3156129..3156698) Clostridium phytofermentans ISDg 5742748 YP_001559684.1 CDS Cphy_2584 NC_010001.1 3156718 3157497 R PFAM: chromosome segregation and condensation protein ScpA; KEGG: amt:Amet_2531 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA complement(3156718..3157497) Clostridium phytofermentans ISDg 5742749 YP_001559685.1 CDS Cphy_2585 NC_010001.1 3157502 3158062 R hypothetical protein complement(3157502..3158062) Clostridium phytofermentans ISDg 5742750 YP_001559686.1 CDS Cphy_2586 NC_010001.1 3158113 3158979 R PFAM: metallophosphoesterase; KEGG: cdf:CD1123 phosphoesterase; metallophosphoesterase complement(3158113..3158979) Clostridium phytofermentans ISDg 5742751 YP_001559687.1 CDS Cphy_2587 NC_010001.1 3159224 3160576 R PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: csc:Csac_1744 serine-type D-Ala-D-Ala carboxypeptidase; Serine-type D-Ala-D-Ala carboxypeptidase complement(3159224..3160576) Clostridium phytofermentans ISDg 5742752 YP_001559688.1 CDS Cphy_2588 NC_010001.1 3160744 3161331 R KEGG: cac:CAC3086 protein containing cell adhesion domain; hypothetical protein complement(3160744..3161331) Clostridium phytofermentans ISDg 5742753 YP_001559689.1 CDS Cphy_2589 NC_010001.1 3161650 3164493 R PFAM: protein of unknown function DUF214; KEGG: efa:EF1321 permease domain protein; hypothetical protein complement(3161650..3164493) Clostridium phytofermentans ISDg 5742754 YP_001559690.1 CDS Cphy_2590 NC_010001.1 3164514 3165218 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC0822 ABC transporter, ATP-binding protein; ABC transporter complement(3164514..3165218) Clostridium phytofermentans ISDg 5742755 YP_001559691.1 CDS Cphy_2591 NC_010001.1 3165484 3166809 R KEGG: cno:NT01CX_1499 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; pyrimidine-nucleoside phosphorylase complement(3165484..3166809) Clostridium phytofermentans ISDg 5742756 YP_001559692.1 CDS Cphy_2592 NC_010001.1 3167211 3168242 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3167211..3168242 Clostridium phytofermentans ISDg 5742757 YP_001559693.1 CDS Cphy_2593 NC_010001.1 3168476 3169351 R PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: amt:Amet_2523 tyrosine recombinase XerD; integrase family protein complement(3168476..3169351) Clostridium phytofermentans ISDg 5742758 YP_001559694.1 CDS Cphy_2594 NC_010001.1 3169548 3170114 R PFAM: protein of unknown function DUF95 transmembrane; KEGG: bce:BC4092 stage II sporulation protein M; hypothetical protein complement(3169548..3170114) Clostridium phytofermentans ISDg 5742759 YP_001559695.1 CDS Cphy_2595 NC_010001.1 3170220 3170750 R PFAM: NUDIX hydrolase; KEGG: tte:TTE1310 NTP pyrophosphohydrolases including oxidative damage repair enzymes; NUDIX hydrolase complement(3170220..3170750) Clostridium phytofermentans ISDg 5742760 YP_001559696.1 CDS Cphy_2596 NC_010001.1 3171201 3172373 R PFAM: Ig domain protein group 2 domain protein; KEGG: cth:Cthe_0056 Ig-like, group 2; Ig domain-containing protein complement(3171201..3172373) Clostridium phytofermentans ISDg 5742761 YP_001559697.1 CDS Cphy_2597 NC_010001.1 3172580 3173884 D KEGG: ckl:CKL_2277 predicted transposase; transposase 3172580..3173884 Clostridium phytofermentans ISDg 5742762 YP_001559698.1 CDS Cphy_2598 NC_010001.1 3174862 3176412 R KEGG: cth:Cthe_1091 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; YmdA/YtgF protein; PFAM: KH type 1 domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; RNA binding metal dependent phosphohydrolase complement(3174862..3176412) Clostridium phytofermentans ISDg 5742763 YP_001559699.1 CDS Cphy_2599 NC_010001.1 3176597 3178060 R KEGG: cdf:CD1986 radical SAM protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; tRNA-i(6)A37 thiotransferase enzyme MiaB complement(3176597..3178060) Clostridium phytofermentans ISDg 5742764 YP_001559700.1 CDS Cphy_2600 NC_010001.1 3178387 3179634 R TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase_; KEGG: tte:TTE1278 Gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase complement(3178387..3179634) Clostridium phytofermentans ISDg 5742765 YP_001559701.1 CDS Cphy_2601 NC_010001.1 3179740 3180312 R PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: cno:NT01CX_1657 5-formyltetrahydrofolate cyclo-ligase family protein; 5-formyltetrahydrofolate cyclo-ligase complement(3179740..3180312) Clostridium phytofermentans ISDg 5742766 YP_001559702.1 CDS Cphy_2602 NC_010001.1 3180315 3180524 R PFAM: protein of unknown function DUF896; KEGG: bld:BLi02035 YnzC; hypothetical protein complement(3180315..3180524) Clostridium phytofermentans ISDg 5742767 YP_001559703.1 CDS Cphy_2603 NC_010001.1 3180849 3181697 R KEGG: cbe:Cbei_0024 glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; glutamate 5-kinase complement(3180849..3181697) Clostridium phytofermentans ISDg 5742768 YP_001559704.1 CDS Cphy_2604 NC_010001.1 3181852 3183498 R KEGG: cbh:CLC_3373 oxidoreductase, FAD-binding; oxidoreductase, FAD-binding complement(3181852..3183498) Clostridium phytofermentans ISDg 5742769 YP_001559705.1 CDS Cphy_2605 NC_010001.1 3183517 3184740 R PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: drm:Dred_1437 HI0933 family protein; hypothetical protein complement(3183517..3184740) Clostridium phytofermentans ISDg 5742770 YP_001559706.1 CDS Cphy_2606 NC_010001.1 3184797 3185477 R KEGG: tte:TTE1137 hypothetical protein; hypothetical protein complement(3184797..3185477) Clostridium phytofermentans ISDg 5742771 YP_001559707.1 CDS Cphy_2607 NC_010001.1 3185539 3187173 R PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: amt:Amet_1383 polysaccharide biosynthesis protein; virulence factor MVIN family protein complement(3185539..3187173) Clostridium phytofermentans ISDg 5742772 YP_001559708.1 CDS Cphy_2608 NC_010001.1 3187347 3188606 R KEGG: cth:Cthe_0155 hypothetical protein; hypothetical protein complement(3187347..3188606) Clostridium phytofermentans ISDg 5742773 YP_001559709.1 CDS Cphy_2609 NC_010001.1 3188711 3189208 R PFAM: protein of unknown function UPF0054; KEGG: cno:NT01CX_0046 hypothetical protein; hypothetical protein complement(3188711..3189208) Clostridium phytofermentans ISDg 5742774 YP_001559710.1 CDS Cphy_2610 NC_010001.1 3189247 3190614 R TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ckl:CKL_0912 predicted membrane-associated hydrolase; metal dependent phosphohydrolase complement(3189247..3190614) Clostridium phytofermentans ISDg 5742775 YP_001559711.1 CDS Cphy_2611 NC_010001.1 3190646 3191701 R PFAM: PhoH family protein; KEGG: tte:TTE0970 Phosphate starvation-inducible protein PhoH, predicted ATPase; PhoH family protein complement(3190646..3191701) Clostridium phytofermentans ISDg 5742776 YP_001559712.1 CDS Cphy_2612 NC_010001.1 3191676 3192914 R PFAM: stage IV sporulation YqfD; KEGG: bcy:Bcer98_3032 stage IV sporulation YqfD; stage IV sporulation YqfD complement(3191676..3192914) Clostridium phytofermentans ISDg 5742777 YP_001559713.1 CDS Cphy_2613 NC_010001.1 3192997 3193380 R PFAM: protein of unknown function DUF1429; KEGG: amt:Amet_3035 protein of unknown function DUF1429; hypothetical protein complement(3192997..3193380) Clostridium phytofermentans ISDg 5742778 YP_001559714.1 CDS Cphy_2614 NC_010001.1 3193740 3194405 R PFAM: nitrogen regulatory protein P-II; KEGG: amt:Amet_3184 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(3193740..3194405) Clostridium phytofermentans ISDg 5742779 YP_001559715.1 CDS Cphy_2615 NC_010001.1 3194398 3195924 R PFAM: protein of unknown function DUF1538; KEGG: cbo:CBO2972 membrane protein; hypothetical protein complement(3194398..3195924) Clostridium phytofermentans ISDg 5742780 YP_001559716.1 CDS rpsU NC_010001.1 3196418 3196594 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(3196418..3196594) Clostridium phytofermentans ISDg 5742781 YP_001559717.1 CDS alaS NC_010001.1 3196835 3199474 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(3196835..3199474) Clostridium phytofermentans ISDg 5742782 YP_001559718.1 CDS Cphy_2618 NC_010001.1 3200545 3201744 D PFAM: Ig domain protein group 2 domain protein; KEGG: cth:Cthe_0056 Ig-like, group 2; Ig domain-containing protein 3200545..3201744 Clostridium phytofermentans ISDg 5742783 YP_001559719.1 CDS Cphy_2619 NC_010001.1 3202794 3207377 R KEGG: cth:Cthe_0996 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, epsilon subunit; DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; Exonuclease RNase T and DNA polymerase III; SMART: phosphoesterase PHP domain protein; Exonuclease; DNA polymerase III subunit alpha complement(3202794..3207377) Clostridium phytofermentans ISDg 5742786 YP_001559720.1 CDS Cphy_2620 NC_010001.1 3207589 3208641 R KEGG: cth:Cthe_0997 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase complement(3207589..3208641) Clostridium phytofermentans ISDg 5742787 YP_001559721.1 CDS Cphy_2621 NC_010001.1 3208713 3210005 R KEGG: cth:Cthe_0998 membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc metalloprotease complement(3208713..3210005) Clostridium phytofermentans ISDg 5742788 YP_001559722.1 CDS Cphy_2622 NC_010001.1 3210043 3211209 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(3210043..3211209) Clostridium phytofermentans ISDg 5742789 YP_001559723.1 CDS Cphy_2623 NC_010001.1 3211320 3212129 R PFAM: phosphatidate cytidylyltransferase; KEGG: cth:Cthe_1000 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(3211320..3212129) Clostridium phytofermentans ISDg 5742790 YP_001559724.1 CDS Cphy_2624 NC_010001.1 3212183 3212905 R KEGG: csc:Csac_2355 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(3212183..3212905) Clostridium phytofermentans ISDg 5742791 YP_001559725.1 CDS frr NC_010001.1 3213250 3213804 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(3213250..3213804) Clostridium phytofermentans ISDg 5742792 YP_001559726.1 CDS Cphy_2626 NC_010001.1 3213846 3214550 R TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: cth:Cthe_1004 uridylate kinase; uridylate kinase complement(3213846..3214550) Clostridium phytofermentans ISDg 5742793 YP_001559727.1 CDS Cphy_2627 NC_010001.1 3214681 3215790 R KEGG: mmu:100043744 similar to retinitis pigmentosa GTPase regulator; hypothetical protein complement(3214681..3215790) Clostridium phytofermentans ISDg 5742794 YP_001559728.1 CDS Cphy_2628 NC_010001.1 3215937 3216515 R PFAM: regulatory protein ArsR; KEGG: gur:Gura_3531 regulatory protein, ArsR; ArsR family transcriptional regulator complement(3215937..3216515) Clostridium phytofermentans ISDg 5742795 YP_001559729.1 CDS Cphy_2629 NC_010001.1 3216530 3216907 R hypothetical protein complement(3216530..3216907) Clostridium phytofermentans ISDg 5742796 YP_001559730.1 CDS Cphy_2630 NC_010001.1 3217257 3218030 R KEGG: sat:SYN_02020 nitroreductase family protein; nitroreductase family protein complement(3217257..3218030) Clostridium phytofermentans ISDg 5742797 YP_001559731.1 CDS Cphy_2631 NC_010001.1 3218143 3218523 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lmf:LMOf2365_0426 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(3218143..3218523) Clostridium phytofermentans ISDg 5742798 YP_001559732.1 CDS Cphy_2632 NC_010001.1 3218942 3220573 R PFAM: glycoside hydrolase family 43; KEGG: bvu:BVU_1983 glycoside hydrolase family 43, candidate beta-xylosidase/alpha-L-arabinofuranosidase; glycoside hydrolase family protein complement(3218942..3220573) Clostridium phytofermentans ISDg 5742799 YP_001559733.1 CDS Cphy_2633 NC_010001.1 3220769 3221194 R KEGG: cno:NT01CX_2100 flavodoxin; flavodoxin complement(3220769..3221194) Clostridium phytofermentans ISDg 5742800 YP_001559734.1 CDS Cphy_2634 NC_010001.1 3222015 3222473 R PFAM: protein of unknown function DUF861 cupin_3; Ethanolamine utilisation EutQ family protein; KEGG: cdf:CD1925 ethanolamine/propanediol utilization protein; ethanolamine utilisation EutQ family protein complement(3222015..3222473) Clostridium phytofermentans ISDg 5742801 YP_001559735.1 CDS Cphy_2635 NC_010001.1 3222582 3223670 R PFAM: Ethanolamine utilisation protein EutH; KEGG: cdf:CD1924 ethanolamine/propanediol transporter; ethanolamine utilisation protein EutH complement(3222582..3223670) Clostridium phytofermentans ISDg 5742802 YP_001559736.1 CDS Cphy_2636 NC_010001.1 3223683 3224240 R PFAM: microcompartments protein; KEGG: cdf:CD1923 ethanolamine/propanediol utilization protein; microcompartments protein complement(3223683..3224240) Clostridium phytofermentans ISDg 5742803 YP_001559737.1 CDS Cphy_2637 NC_010001.1 3224230 3224505 R PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cpf:CPF_0900 ethanolamine utilization protein EutN; ethanolamine utilization protein EutN/carboxysome structural protein Ccml complement(3224230..3224505) Clostridium phytofermentans ISDg 5742804 YP_001559738.1 CDS Cphy_2638 NC_010001.1 3224521 3225243 R KEGG: cdf:CD1921 ethanolamine utilization/propanediol conserved hypothetical protein; hypothetical protein complement(3224521..3225243) Clostridium phytofermentans ISDg 5742805 YP_001559739.1 CDS Cphy_2639 NC_010001.1 3225395 3226042 R PFAM: Propanediol utilization protein; KEGG: cpe:CPE0905 probable propanediol utilization protein; propanediol utilization protein complement(3225395..3226042) Clostridium phytofermentans ISDg 5742806 YP_001559740.1 CDS Cphy_2640 NC_010001.1 3226236 3227033 R PFAM: cobalamin adenosyltransferase; KEGG: cpf:CPF_0897 ethanolamine utilization cobalamin adenosyltransferase; cobalamin adenosyltransferase complement(3226236..3227033) Clostridium phytofermentans ISDg 5742807 YP_001559741.1 CDS Cphy_2641 NC_010001.1 3227139 3227429 R PFAM: microcompartments protein; KEGG: efa:EF1623 microcompartment protein; microcompartments protein complement(3227139..3227429) Clostridium phytofermentans ISDg 5742808 YP_001559742.1 CDS Cphy_2642 NC_010001.1 3227497 3228984 R TIGRFAM: acetaldehyde dehydrogenase (acetylating); PFAM: Aldehyde Dehydrogenase_; KEGG: cdf:CD1917 ethanolamine/propanediol utilisation aldehyde-alcohol dehydrogenase; acetaldehyde dehydrogenase complement(3227497..3228984) Clostridium phytofermentans ISDg 5742809 YP_001559743.1 CDS Cphy_2643 NC_010001.1 3228999 3230090 R PFAM: microcompartments protein; KEGG: ckl:CKL_0845 predicted microcompartment shellprotein; microcompartments protein complement(3228999..3230090) Clostridium phytofermentans ISDg 5742810 YP_001559744.1 CDS Cphy_2644 NC_010001.1 3230092 3230748 R PFAM: microcompartments protein; KEGG: cdf:CD1915 ethanolamine/propanediol utilization protein; microcompartments protein complement(3230092..3230748) Clostridium phytofermentans ISDg 5742811 YP_001559745.1 CDS Cphy_2645 NC_010001.1 3230864 3231754 R catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit complement(3230864..3231754) Clostridium phytofermentans ISDg 5742812 YP_001559746.1 CDS Cphy_2646 NC_010001.1 3231785 3233149 R PFAM: Ethanolamine ammonia lyase large subunit; KEGG: cpf:CPF_0891 ethanolamine ammonia-lyase, large subunit; ethanolamine ammonia lyase large subunit complement(3231785..3233149) Clostridium phytofermentans ISDg 5742813 YP_001559747.1 CDS eutA NC_010001.1 3233313 3234782 R ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase complement(3233313..3234782) Clostridium phytofermentans ISDg 5742814 YP_001559748.1 CDS Cphy_2648 NC_010001.1 3234881 3235330 R TIGRFAM: ethanolamine utilization protein, EutP; KEGG: cpf:CPF_0887 ethanolamine utilization protein, EutP; ethanolamine utilization protein, EutP complement(3234881..3235330) Clostridium phytofermentans ISDg 5742815 YP_001559749.1 CDS Cphy_2649 NC_010001.1 3235495 3235848 R PFAM: microcompartments protein; KEGG: cdf:CD1908 ethanolamine/propanediol utilization protein; microcompartments protein complement(3235495..3235848) Clostridium phytofermentans ISDg 5742816 YP_001559750.1 CDS Cphy_2650 NC_010001.1 3235873 3237003 R PFAM: iron-containing alcohol dehydrogenase; KEGG: cpf:CPF_0885 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase complement(3235873..3237003) Clostridium phytofermentans ISDg 5742817 YP_001559751.1 CDS Cphy_2651 NC_010001.1 3237415 3238164 R KEGG: tde:TDE1697 phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase complement(3237415..3238164) Clostridium phytofermentans ISDg 5742818 YP_001559752.1 CDS Cphy_2652 NC_010001.1 3238503 3239213 D PFAM: AraC protein arabinose-binding/dimerisation; KEGG: cbe:Cbei_4840 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 3238503..3239213 Clostridium phytofermentans ISDg 5742819 YP_001559753.1 CDS Cphy_2653 NC_010001.1 3239229 3239465 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_4840 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 3239229..3239465 Clostridium phytofermentans ISDg 5742820 YP_001559754.1 CDS Cphy_2654 NC_010001.1 3239628 3241388 R KEGG: bcl:ABC0558 sugar ABC transporter substrate-binding protein; sugar ABC transporter substrate-binding protein complement(3239628..3241388) Clostridium phytofermentans ISDg 5742821 YP_001559755.1 CDS Cphy_2655 NC_010001.1 3241527 3242447 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0557 sugar ABC transporter permease; binding-protein-dependent transport systems inner membrane component complement(3241527..3242447) Clostridium phytofermentans ISDg 5742822 YP_001559756.1 CDS Cphy_2656 NC_010001.1 3242462 3243409 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein complement(3242462..3243409) Clostridium phytofermentans ISDg 5742823 YP_001559757.1 CDS Cphy_2657 NC_010001.1 3243882 3244874 R PFAM: aldo/keto reductase; KEGG: cbe:Cbei_3974 aldo/keto reductase; aldo/keto reductase complement(3243882..3244874) Clostridium phytofermentans ISDg 5742824 YP_001559758.1 CDS Cphy_2658 NC_010001.1 3245520 3247439 D PFAM: protein of unknown function DUF303 acetylesterase ; glycoside hydrolase family 2 sugar binding; KEGG: csc:Csac_0206 protein of unknown function DUF303, acetylesterase; hypothetical protein 3245520..3247439 Clostridium phytofermentans ISDg 5742825 YP_001559759.1 CDS Cphy_2659 NC_010001.1 3248052 3249038 R TIGRFAM: diaminopimelate dehydrogenase; KEGG: cth:Cthe_0922 diaminopimelate dehydrogenase; diaminopimelate dehydrogenase complement(3248052..3249038) Clostridium phytofermentans ISDg 5742826 YP_001559760.1 CDS Cphy_2660 NC_010001.1 3249695 3250615 D PFAM: Aldose 1-epimerase; KEGG: dge:Dgeo_2023 aldose 1-epimerase; aldose 1-epimerase 3249695..3250615 Clostridium phytofermentans ISDg 5742827 YP_001559761.1 CDS Cphy_2661 NC_010001.1 3250749 3251186 R PFAM: regulatory protein MarR; KEGG: amt:Amet_2072 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(3250749..3251186) Clostridium phytofermentans ISDg 5742828 YP_001559762.1 CDS Cphy_2662 NC_010001.1 3251365 3251910 R PFAM: glutathione peroxidase; KEGG: fnu:FN2007 glutathione peroxidase; glutathione peroxidase complement(3251365..3251910) Clostridium phytofermentans ISDg 5742829 YP_001559763.1 CDS Cphy_2663 NC_010001.1 3252012 3252485 R PFAM: glutathione peroxidase; KEGG: cpf:CPF_0904 glutathione peroxidase; glutathione peroxidase complement(3252012..3252485) Clostridium phytofermentans ISDg 5742830 YP_001559764.1 CDS Cphy_2664 NC_010001.1 3252754 3253260 R PFAM: transcription factor CarD; KEGG: cdf:CD3037 regulatory protein; CarD family transcriptional regulator complement(3252754..3253260) Clostridium phytofermentans ISDg 5742831 YP_001559765.1 CDS Cphy_2665 NC_010001.1 3253787 3255541 R TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: ctc:CTC02286 threonyl-tRNA synthetase; threonyl-tRNA synthetase complement(3253787..3255541) Clostridium phytofermentans ISDg 5742832 YP_001559766.1 CDS Cphy_2666 NC_010001.1 3255879 3256547 R KEGG: amt:Amet_3774 periplasmic binding protein; periplasmic binding protein complement(3255879..3256547) Clostridium phytofermentans ISDg 5742833 YP_001559767.1 CDS Cphy_2667 NC_010001.1 3256913 3257491 D PFAM: regulatory protein TetR; KEGG: cbh:CLC_0816 transcriptional regulator; TetR family transcriptional regulator 3256913..3257491 Clostridium phytofermentans ISDg 5742834 YP_001559768.1 CDS Cphy_2668 NC_010001.1 3257504 3257761 D KEGG: cbh:CLC_0817 hypothetical protein; hypothetical protein 3257504..3257761 Clostridium phytofermentans ISDg 5742835 YP_001559769.1 CDS Cphy_2669 NC_010001.1 3258027 3258890 R PFAM: extracellular solute-binding protein family 3; KEGG: sgo:SGO_0982 amino acid ABC transporter, amino acid-binding protein; extracellular solute-binding protein complement(3258027..3258890) Clostridium phytofermentans ISDg 5742836 YP_001559770.1 CDS Cphy_2670 NC_010001.1 3258987 3259742 R PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_2512 ABC transporter related; ABC transporter complement(3258987..3259742) Clostridium phytofermentans ISDg 5742837 YP_001559771.1 CDS Cphy_2671 NC_010001.1 3259747 3260424 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ste:STER_1541 ABC-type amino acid transport system, permease component; polar amino acid ABC transporter inner membrane subunit complement(3259747..3260424) Clostridium phytofermentans ISDg 5742838 YP_001559772.1 CDS Cphy_2672 NC_010001.1 3260384 3261064 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgo:SGO_0985 amino acid ABC transporter, permease SP0711; polar amino acid ABC transporter inner membrane subunit complement(3260384..3261064) Clostridium phytofermentans ISDg 5742839 YP_001559773.1 CDS Cphy_2673 NC_010001.1 3262256 3263230 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0487 ABC transporter, ATP-binding protein; ABC transporter 3262256..3263230 Clostridium phytofermentans ISDg 5742840 YP_001559774.1 CDS Cphy_2674 NC_010001.1 3263227 3264030 D KEGG: tde:TDE0486 membrane protein; hypothetical protein 3263227..3264030 Clostridium phytofermentans ISDg 5742841 YP_001559775.1 CDS Cphy_2675 NC_010001.1 3264166 3264915 D PFAM: protein of unknown function DUF990; KEGG: tde:TDE0485 membrane protein; hypothetical protein 3264166..3264915 Clostridium phytofermentans ISDg 5742842 YP_001559776.1 CDS Cphy_2676 NC_010001.1 3265535 3266551 R KEGG: cbf:CLI_3233 hypothetical protein; hypothetical protein complement(3265535..3266551) Clostridium phytofermentans ISDg 5742843 YP_001559777.1 CDS Cphy_2677 NC_010001.1 3266561 3267955 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cbf:CLI_3234 radical SAM domain protein; radical SAM domain-containing protein complement(3266561..3267955) Clostridium phytofermentans ISDg 5742844 YP_001559778.1 CDS Cphy_2678 NC_010001.1 3268469 3269269 D PFAM: ribonuclease BN; KEGG: cbe:Cbei_4879 ribonuclease BN; ribonuclease BN 3268469..3269269 Clostridium phytofermentans ISDg 5742845 YP_001559779.1 CDS Cphy_2679 NC_010001.1 3269339 3270271 R TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; Translation elongation factor EFTs/EF1B dimerisation; KEGG: ctc:CTC01262 protein translation elongation factor TS; translation elongation factor Ts complement(3269339..3270271) Clostridium phytofermentans ISDg 5742846 YP_001559780.1 CDS rpsB NC_010001.1 3270485 3271225 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(3270485..3271225) Clostridium phytofermentans ISDg 5742847 YP_001559781.1 CDS Cphy_2681 NC_010001.1 3271467 3272234 R KEGG: bpu:BPUM_2222 hypothetical protein; hypothetical protein complement(3271467..3272234) Clostridium phytofermentans ISDg 5742848 YP_001559782.1 CDS Cphy_2682 NC_010001.1 3272356 3273069 R KEGG: mmu:20957 synaptonemal complex protein 1; hypothetical protein complement(3272356..3273069) Clostridium phytofermentans ISDg 5742849 YP_001559783.1 CDS Cphy_2683 NC_010001.1 3273088 3273411 R hypothetical protein complement(3273088..3273411) Clostridium phytofermentans ISDg 5742850 YP_001559784.1 CDS Cphy_2684 NC_010001.1 3273439 3275037 R PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 protein of unknown function DUF342; hypothetical protein complement(3273439..3275037) Clostridium phytofermentans ISDg 5742851 YP_001559785.1 CDS Cphy_2685 NC_010001.1 3275119 3275883 R KEGG: lic:LIC11380 RNA polymerase sigma-28 factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; RNA polymerase sigma 28 subunit FliA/WhiG complement(3275119..3275883) Clostridium phytofermentans ISDg 5742852 YP_001559786.1 CDS Cphy_2686 NC_010001.1 3275915 3276238 R hypothetical protein complement(3275915..3276238) Clostridium phytofermentans ISDg 5742853 YP_001559787.1 CDS Cphy_2687 NC_010001.1 3276291 3276776 R stimulates methylation of MCP proteins; PFAM: CheD family protein; KEGG: bha:BH2433 methylation of methyl-accepting chemotaxis protein; hypothetical protein complement(3276291..3276776) Clostridium phytofermentans ISDg 5742854 YP_001559788.1 CDS Cphy_2688 NC_010001.1 3276784 3277401 R PFAM: CheC domain protein; KEGG: cth:Cthe_0492 CheC, inhibitor of MCP methylation; chemotaxis protein CheC complement(3276784..3277401) Clostridium phytofermentans ISDg 5742855 YP_001559789.1 CDS Cphy_2689 NC_010001.1 3277480 3277947 R PFAM: CheW domain protein; KEGG: cth:Cthe_0491 CheW protein; chemotaxis protein CheW complement(3277480..3277947) Clostridium phytofermentans ISDg 5742856 YP_001559790.1 CDS Cphy_2690 NC_010001.1 3277960 3280053 R PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: cth:Cthe_0490 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase complement(3277960..3280053) Clostridium phytofermentans ISDg 5742857 YP_001559791.1 CDS Cphy_2691 NC_010001.1 3280055 3281173 R PFAM: CheB methylesterase; response regulator receiver; KEGG: cth:Cthe_0489 response regulator receiver modulated CheB methylesterase; response regulator receiver modulated CheB methylesterase complement(3280055..3281173) Clostridium phytofermentans ISDg 5742858 YP_001559792.1 CDS Cphy_2692 NC_010001.1 3281288 3282049 R PFAM: type IV pilus assembly PilZ; KEGG: csc:Csac_1280 type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(3281288..3282049) Clostridium phytofermentans ISDg 5742859 YP_001559793.1 CDS Cphy_2693 NC_010001.1 3282076 3282957 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cth:Cthe_0487 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase complement(3282076..3282957) Clostridium phytofermentans ISDg 5742860 YP_001559794.1 CDS Cphy_2694 NC_010001.1 3282958 3284172 R PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; KEGG: cth:Cthe_0486 GTP-binding signal recognition particle SRP54, G-domain; GTP-binding signal recognition particle complement(3282958..3284172) Clostridium phytofermentans ISDg 5742861 YP_001559795.1 CDS Cphy_2695 NC_010001.1 3284172 3286205 R TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: cth:Cthe_0485 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA complement(3284172..3286205) Clostridium phytofermentans ISDg 5742862 YP_001559796.1 CDS Cphy_2696 NC_010001.1 3286229 3287350 R TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: cno:NT01CX_1918 flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB complement(3286229..3287350) Clostridium phytofermentans ISDg 5742863 YP_001559797.1 CDS Cphy_2697 NC_010001.1 3287373 3288140 R TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: csc:Csac_1275 flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR complement(3287373..3288140) Clostridium phytofermentans ISDg 5742864 YP_001559798.1 CDS Cphy_2698 NC_010001.1 3288152 3288421 R TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: cvi:CV_3125 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ complement(3288152..3288421) Clostridium phytofermentans ISDg 5742991 YP_001559799.1 CDS Cphy_2699 NC_010001.1 3288437 3289282 R KEGG: swo:Swol_0865 flagellar biosynthetic protein; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; flagellar biosynthetic protein FliP complement(3288437..3289282) Clostridium phytofermentans ISDg 5742992 YP_001559800.1 CDS Cphy_2700 NC_010001.1 3289289 3289711 R KEGG: tte:TTE1427 flagellar protein FliO/FliZ; hypothetical protein complement(3289289..3289711) Clostridium phytofermentans ISDg 5742993 YP_001559801.1 CDS Cphy_2701 NC_010001.1 3289711 3290073 R PFAM: response regulator receiver; KEGG: csc:Csac_1271 response regulator receiver protein; response regulator receiver protein complement(3289711..3290073) Clostridium phytofermentans ISDg 5742994 YP_001559802.1 CDS Cphy_2702 NC_010001.1 3290160 3291365 R TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 CheC, inhibitor of MCP methylation; chemotaxis protein CheC complement(3290160..3291365) Clostridium phytofermentans ISDg 5742995 YP_001559803.1 CDS Cphy_2703 NC_010001.1 3291373 3292350 R PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: cth:Cthe_0477 flagellar motor switch protein FliM; flagellar motor switch protein FliM complement(3291373..3292350) Clostridium phytofermentans ISDg 5742996 YP_001559804.1 CDS Cphy_2704 NC_010001.1 3292382 3292903 R hypothetical protein complement(3292382..3292903) Clostridium phytofermentans ISDg 5742997 YP_001559805.1 CDS Cphy_2705 NC_010001.1 3292960 3293787 R PFAM: OmpA/MotB domain protein; KEGG: dsy:DSY0295 hypothetical protein; OmpA/MotB domain-containing protein complement(3292960..3293787) Clostridium phytofermentans ISDg 5742998 YP_001559806.1 CDS Cphy_2706 NC_010001.1 3293768 3294568 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: amt:Amet_2714 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(3293768..3294568) Clostridium phytofermentans ISDg 5742999 YP_001559807.1 CDS Cphy_2707 NC_010001.1 3294700 3294906 R PFAM: flagellar FlbD family protein; KEGG: tte:TTE1432 uncharacterized protein, possibly involved in motility; flagellar FlbD family protein complement(3294700..3294906) Clostridium phytofermentans ISDg 5743000 YP_001559808.1 CDS Cphy_2708 NC_010001.1 3295110 3296549 R PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_0474 protein of unknown function DUF1078-like protein; hypothetical protein complement(3295110..3296549) Clostridium phytofermentans ISDg 5743001 YP_001559809.1 CDS Cphy_2709 NC_010001.1 3296639 3297037 R TIGRFAM: flagellar operon protein; KEGG: cth:Cthe_0473 flagellar operon protein; flagellar operon protein complement(3296639..3297037) Clostridium phytofermentans ISDg 5743002 YP_001559810.1 CDS Cphy_2710 NC_010001.1 3297257 3298084 R PFAM: flagellar hook capping protein; KEGG: cth:Cthe_0472 flagellar hook capping protein; flagellar hook capping protein complement(3297257..3298084) Clostridium phytofermentans ISDg 5743003 YP_001559811.1 CDS Cphy_2711 NC_010001.1 3298102 3299499 R PFAM: flagellar hook-length control protein; KEGG: cth:Cthe_0471 flagellar hook-length control protein; flagellar hook-length control protein complement(3298102..3299499) Clostridium phytofermentans ISDg 5743004 YP_001559812.1 CDS Cphy_2712 NC_010001.1 3299731 3300516 R KEGG: cth:Cthe_0470 hypothetical protein; hypothetical protein complement(3299731..3300516) Clostridium phytofermentans ISDg 5743005 YP_001559813.1 CDS Cphy_2713 NC_010001.1 3300516 3300971 R TIGRFAM: flagellar export protein FliJ; KEGG: cth:Cthe_0469 flagellar export protein FliJ; flagellar export protein FliJ complement(3300516..3300971) Clostridium phytofermentans ISDg 5743006 YP_001559814.1 CDS Cphy_2714 NC_010001.1 3301071 3302375 R KEGG: cth:Cthe_0468 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; flagellar protein export ATPase FliI complement(3301071..3302375) Clostridium phytofermentans ISDg 5743007 YP_001559815.1 CDS Cphy_2715 NC_010001.1 3302592 3303464 R KEGG: cth:Cthe_0467 flagellar biosynthesis/type III secretory pathway protein-like protein; hypothetical protein complement(3302592..3303464) Clostridium phytofermentans ISDg 5743008 YP_001559816.1 CDS Cphy_2716 NC_010001.1 3303457 3304476 R PFAM: flagellar motor switch protein FliG; KEGG: cth:Cthe_0466 flagellar motor switch protein FliG; flagellar motor switch protein FliG complement(3303457..3304476) Clostridium phytofermentans ISDg 5743009 YP_001559817.1 CDS Cphy_2717 NC_010001.1 3304492 3306087 R TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; KEGG: csc:Csac_1257 flagellar M-ring protein FliF; flagellar M-ring protein FliF complement(3304492..3306087) Clostridium phytofermentans ISDg 5743010 YP_001559818.1 CDS Cphy_2718 NC_010001.1 3306105 3306425 R PFAM: flagellar hook-basal body complex protein FliE; KEGG: fno:Fnod_1716 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex protein FliE complement(3306105..3306425) Clostridium phytofermentans ISDg 5743011 YP_001559819.1 CDS Cphy_2719 NC_010001.1 3306446 3306898 R TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_0463 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC complement(3306446..3306898) Clostridium phytofermentans ISDg 5743012 YP_001559820.1 CDS Cphy_2720 NC_010001.1 3306915 3307301 R TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: amt:Amet_2728 flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB complement(3306915..3307301) Clostridium phytofermentans ISDg 5743013 YP_001559821.1 CDS Cphy_2721 NC_010001.1 3307916 3308683 R CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY complement(3307916..3308683) Clostridium phytofermentans ISDg 5743014 YP_001559822.1 CDS Cphy_2722 NC_010001.1 3309011 3311083 R KEGG: ckl:CKL_1415 hypothetical protein; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase I complement(3309011..3311083) Clostridium phytofermentans ISDg 5743015 YP_001559823.1 CDS Cphy_2723 NC_010001.1 3312080 3313189 R TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: gme:Gmet_0890 smf protein; DNA protecting protein DprA complement(3312080..3313189) Clostridium phytofermentans ISDg 5743016 YP_001559824.1 CDS Cphy_2724 NC_010001.1 3313190 3314728 R KEGG: tte:TTE1455 predicted ATPase with chaperone activity; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase; Mg chelatase subunit ChlI complement(3313190..3314728) Clostridium phytofermentans ISDg 5743017 YP_001559825.1 CDS nrdR NC_010001.1 3315035 3315496 R PFAM: ATP-cone domain protein; KEGG: cth:Cthe_0450 ribonucleotide reductase regulator NrdR-like protein; transcriptional regulator NrdR complement(3315035..3315496) Clostridium phytofermentans ISDg 5743018 YP_001559826.1 CDS Cphy_2726 NC_010001.1 3315647 3315907 D TIGRFAM: sporulation protein, YlmC/YmxH family; KEGG: cth:Cthe_0449 hypothetical protein; YlmC/YmxH family sporulation protein 3315647..3315907 Clostridium phytofermentans ISDg 5743019 YP_001559827.1 CDS Cphy_2727 NC_010001.1 3316130 3317332 D PFAM: UMUC domain protein DNA-repair protein; KEGG: dsy:DSY4185 hypothetical protein; DNA-directed DNA polymerase 3316130..3317332 Clostridium phytofermentans ISDg 5743020 YP_001559828.1 CDS Cphy_2728 NC_010001.1 3317574 3318878 R KEGG: ckl:CKL_2277 predicted transposase; transposase complement(3317574..3318878) Clostridium phytofermentans ISDg 5743021 YP_001559829.1 CDS Cphy_2729 NC_010001.1 3319172 3320017 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cbe:Cbei_0450 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein complement(3319172..3320017) Clostridium phytofermentans ISDg 5743022 YP_001559830.1 CDS Cphy_2730 NC_010001.1 3320156 3320980 R PFAM: polysaccharide deacetylase; KEGG: cac:CAC0358 predicted xylanase/chitin deacetylase; polysaccharide deacetylase complement(3320156..3320980) Clostridium phytofermentans ISDg 5743023 YP_001559831.1 CDS Cphy_2731 NC_010001.1 3321178 3322029 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpu:BPUM_2666 ABC superfamily ATP binding cassette transporter, membrane protein; binding-protein-dependent transport systems inner membrane component complement(3321178..3322029) Clostridium phytofermentans ISDg 5743024 YP_001559832.1 CDS Cphy_2732 NC_010001.1 3322042 3322992 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2531 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3322042..3322992) Clostridium phytofermentans ISDg 5743025 YP_001559833.1 CDS Cphy_2733 NC_010001.1 3323144 3324745 R PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3316 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(3323144..3324745) Clostridium phytofermentans ISDg 5743026 YP_001559834.1 CDS Cphy_2734 NC_010001.1 3325192 3327486 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_4431 response regulator receiver protein; AraC family transcriptional regulator 3325192..3327486 Clostridium phytofermentans ISDg 5742049 YP_001559835.1 CDS Cphy_2735 NC_010001.1 3327576 3328295 D PFAM: lipolytic protein G-D-S-L family; KEGG: bld:BLi04100 hypothetical protein; GDSL family lipase 3327576..3328295 Clostridium phytofermentans ISDg 5742050 YP_001559836.1 CDS Cphy_2736 NC_010001.1 3328548 3330104 R PFAM: glycoside hydrolase family 28; KEGG: amt:Amet_0899 glycoside hydrolase, family 28; glycoside hydrolase family protein complement(3328548..3330104) Clostridium phytofermentans ISDg 5742051 YP_001559837.1 CDS Cphy_2737 NC_010001.1 3330194 3331078 R PFAM: glycosyl hydrolase family 88; KEGG: amt:Amet_0895 glycosyl hydrolase, family 88; glycosyl hydrolase family protein complement(3330194..3331078) Clostridium phytofermentans ISDg 5742052 YP_001559838.1 CDS Cphy_2738 NC_010001.1 3331208 3332038 R 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase complement(3331208..3332038) Clostridium phytofermentans ISDg 5742053 YP_001559839.1 CDS Cphy_2739 NC_010001.1 3332329 3333360 R PFAM: PfkB domain protein; KEGG: bth:BT_0488 2-dehydro-3-deoxygluconokinase; ribokinase-like domain-containing protein complement(3332329..3333360) Clostridium phytofermentans ISDg 5742054 YP_001559840.1 CDS Cphy_2740 NC_010001.1 3333646 3335127 R PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: bth:BT_0486 altronate hydrolase; altronate dehydratase complement(3333646..3335127) Clostridium phytofermentans ISDg 5742055 YP_001559841.1 CDS Cphy_2741 NC_010001.1 3335217 3336674 R catalyzes the formation of D-tagaturonate from D-altronate; altronate oxidoreductase complement(3335217..3336674) Clostridium phytofermentans ISDg 5742056 YP_001559842.1 CDS Cphy_2742 NC_010001.1 3337192 3338193 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: yen:YE1255 regulatory protein; LacI family transcriptional regulator 3337192..3338193 Clostridium phytofermentans ISDg 5742057 YP_001559843.1 CDS Cphy_2743 NC_010001.1 3338265 3339665 D PFAM: Glucuronate isomerase; KEGG: cbe:Cbei_1832 glucuronate isomerase; glucuronate isomerase 3338265..3339665 Clostridium phytofermentans ISDg 5742058 YP_001559844.1 CDS Cphy_2744 NC_010001.1 3339865 3340653 R KEGG: ret:RHE_PF00314 hypothetical protein; hypothetical protein complement(3339865..3340653) Clostridium phytofermentans ISDg 5742059 YP_001559845.1 CDS Cphy_2745 NC_010001.1 3341185 3341541 D hypothetical protein 3341185..3341541 Clostridium phytofermentans ISDg 5742060 YP_001559846.1 CDS Cphy_2746 NC_010001.1 3341607 3342143 D hypothetical protein 3341607..3342143 Clostridium phytofermentans ISDg 5742061 YP_001559847.1 CDS Cphy_2747 NC_010001.1 3342200 3342733 D hypothetical protein 3342200..3342733 Clostridium phytofermentans ISDg 5742062 YP_001559848.1 CDS Cphy_2749 NC_010001.1 3344792 3345199 D hypothetical protein 3344792..3345199 Clostridium phytofermentans ISDg 5742064 YP_001559849.1 CDS pyrB NC_010001.1 3345346 3346269 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 3345346..3346269 Clostridium phytofermentans ISDg 5742065 YP_001559850.1 CDS Cphy_2751 NC_010001.1 3346340 3346771 D involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase 3346340..3346771 Clostridium phytofermentans ISDg 5742066 YP_001559851.1 CDS Cphy_2752 NC_010001.1 3346994 3348664 R PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: dsy:DSY0205 hypothetical protein; formate--tetrahydrofolate ligase complement(3346994..3348664) Clostridium phytofermentans ISDg 5742067 YP_001559852.1 CDS Cphy_2753 NC_010001.1 3349219 3350082 R PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: oih:OB2060 hypothetical protein; RimK domain-containing protein ATP-grasp complement(3349219..3350082) Clostridium phytofermentans ISDg 5742068 YP_001559853.1 CDS Cphy_2754 NC_010001.1 3350076 3350975 R TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: oih:OB2059 hypothetical conserved protein; alpha-L-glutamate ligase complement(3350076..3350975) Clostridium phytofermentans ISDg 5742069 YP_001559854.1 CDS Cphy_2755 NC_010001.1 3351404 3352327 D hypothetical protein 3351404..3352327 Clostridium phytofermentans ISDg 5742070 YP_001559855.1 CDS Cphy_2756 NC_010001.1 3352638 3353135 D PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_03105 histone acetyltransferase HPA2/related acetyltransferase; N-acetyltransferase GCN5 3352638..3353135 Clostridium phytofermentans ISDg 5742071 YP_001559856.1 CDS Cphy_2757 NC_010001.1 3353395 3356235 R PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: cth:Cthe_3039 cell divisionFtsK/SpoIIIE; cell division protein FtsK complement(3353395..3356235) Clostridium phytofermentans ISDg 5742072 YP_001559857.1 CDS Cphy_2758 NC_010001.1 3356416 3357237 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(3356416..3357237) Clostridium phytofermentans ISDg 5742073 YP_001559858.1 CDS Cphy_2759 NC_010001.1 3357417 3358367 R PFAM: peptidase S14 ClpP; KEGG: cth:Cthe_1097 peptidase S14, ClpP; peptidase S14 ClpP complement(3357417..3358367) Clostridium phytofermentans ISDg 5742074 YP_001559859.1 CDS Cphy_2760 NC_010001.1 3358910 3360187 R KEGG: bfs:BF3351 cysteine biosynthesis related protein; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-acetylhomoserine/O-acetylserine sulfhydrylase complement(3358910..3360187) Clostridium phytofermentans ISDg 5742075 YP_001559860.1 CDS Cphy_2761 NC_010001.1 3360353 3361723 R PFAM: peptidase M16 domain protein; KEGG: cth:Cthe_0419 peptidase M16-like protein; peptidase M16 domain-containing protein complement(3360353..3361723) Clostridium phytofermentans ISDg 5742076 YP_001559861.1 CDS Cphy_2762 NC_010001.1 3361898 3362767 R PFAM: sugar-specific permease EIIA 1 domain; KEGG: lpl:lp_3229 beta-glucosides PTS, EIIBCA; sugar-specific permease EIIA complement(3361898..3362767) Clostridium phytofermentans ISDg 5742077 YP_001559862.1 CDS Cphy_2763 NC_010001.1 3362998 3365094 R KEGG: cth:Cthe_0418 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase complement(3362998..3365094) Clostridium phytofermentans ISDg 5742078 YP_001559863.1 CDS Cphy_2764 NC_010001.1 3365704 3366978 R TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cth:Cthe_1384 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(3365704..3366978) Clostridium phytofermentans ISDg 5742079 YP_001559864.1 CDS Cphy_2765 NC_010001.1 3367216 3367779 R KEGG: ctc:CTC01689 hypothetical protein; hypothetical protein complement(3367216..3367779) Clostridium phytofermentans ISDg 5742080 YP_001559865.1 CDS Cphy_2766 NC_010001.1 3368015 3369376 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_1419 MATE efflux family protein; MATE efflux family protein complement(3368015..3369376) Clostridium phytofermentans ISDg 5742081 YP_001559866.1 CDS rpsO NC_010001.1 3369633 3369899 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(3369633..3369899) Clostridium phytofermentans ISDg 5742082 YP_001559867.1 CDS Cphy_2768 NC_010001.1 3370084 3371748 R TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: cno:NT01CX_1154 Na/Pi cotransporter family protein; Na/Pi-cotransporter II-related protein complement(3370084..3371748) Clostridium phytofermentans ISDg 5742083 YP_001559868.1 CDS Cphy_2769 NC_010001.1 3372248 3373639 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bce:BC0583 transcriptional regulator, GntR family / aminotransferase class-I; transcriptional regulator complement(3372248..3373639) Clostridium phytofermentans ISDg 5742084 YP_001559869.1 CDS Cphy_2770 NC_010001.1 3373608 3374561 R TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: cth:Cthe_0987 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF complement(3373608..3374561) Clostridium phytofermentans ISDg 5742085 YP_001559870.1 CDS Cphy_2771 NC_010001.1 3374689 3375612 R TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: cth:Cthe_0988 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B complement(3374689..3375612) Clostridium phytofermentans ISDg 5742086 YP_001559871.1 CDS Cphy_2772 NC_010001.1 3375687 3376661 R PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cbe:Cbei_1204 phosphoesterase, RecJ domain protein; phosphoesterase domain-containing protein complement(3375687..3376661) Clostridium phytofermentans ISDg 5742087 YP_001559872.1 CDS Cphy_2773 NC_010001.1 3376673 3377083 R PFAM: ribosome-binding factor A; KEGG: tte:TTE1392 ribosome-binding factor A; ribosome-binding factor A complement(3376673..3377083) Clostridium phytofermentans ISDg 5742088 YP_001559873.1 CDS Cphy_2774 NC_010001.1 3377233 3380628 R TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Miro domain protein; KEGG: dsy:DSY2517 hypothetical protein; translation initiation factor IF-2 complement(3377233..3380628) Clostridium phytofermentans ISDg 5742089 YP_001559874.1 CDS Cphy_2775 NC_010001.1 3380672 3381019 R PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: cdf:CD1308 ribosomal protein; ribosomal protein L7Ae/L30e/S12e/Gadd45 complement(3380672..3381019) Clostridium phytofermentans ISDg 5742090 YP_001559875.1 CDS Cphy_2776 NC_010001.1 3381012 3381287 R PFAM: protein of unknown function DUF448; KEGG: cbe:Cbei_1200 protein of unknown function DUF448; hypothetical protein complement(3381012..3381287) Clostridium phytofermentans ISDg 5742091 YP_001559876.1 CDS Cphy_2777 NC_010001.1 3381314 3382378 R TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; NusA domain protein; KEGG: tte:TTE1396 transcription terminator; NusA antitermination factor complement(3381314..3382378) Clostridium phytofermentans ISDg 5742092 YP_001559877.1 CDS Cphy_2778 NC_010001.1 3382401 3382868 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(3382401..3382868) Clostridium phytofermentans ISDg 5742093 YP_001559878.1 CDS Cphy_2779 NC_010001.1 3383099 3384076 R TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; KEGG: cpf:CPF_0664 BirA bifunctional protein; biotin--acetyl-CoA-carboxylase ligase complement(3383099..3384076) Clostridium phytofermentans ISDg 5742094 YP_001559879.1 CDS Cphy_2780 NC_010001.1 3384516 3384896 R PFAM: Rubrerythrin; KEGG: cdf:CD2845 rubrerythrin; rubrerythrin complement(3384516..3384896) Clostridium phytofermentans ISDg 5742095 YP_001559880.1 CDS Cphy_2781 NC_010001.1 3385149 3387422 R hypothetical protein complement(3385149..3387422) Clostridium phytofermentans ISDg 5742096 YP_001559881.1 CDS Cphy_2782 NC_010001.1 3387993 3389303 R TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: cth:Cthe_2889 phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP diphosphatase complement(3387993..3389303) Clostridium phytofermentans ISDg 5742097 YP_001559882.1 CDS Cphy_2783 NC_010001.1 3389384 3390103 R KEGG: cth:Cthe_2887 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase complement(3389384..3390103) Clostridium phytofermentans ISDg 5742098 YP_001559883.1 CDS Cphy_2784 NC_010001.1 3390140 3390730 R PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: cth:Cthe_2884 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase complement(3390140..3390730) Clostridium phytofermentans ISDg 5742099 YP_001559884.1 CDS Cphy_2785 NC_010001.1 3390821 3392134 R PFAM: histidinol dehydrogenase; KEGG: cth:Cthe_2882 histidinol dehydrogenase; histidinol dehydrogenase complement(3390821..3392134) Clostridium phytofermentans ISDg 5742100 YP_001559885.1 CDS hisG NC_010001.1 3392200 3392847 R short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase complement(3392200..3392847) Clostridium phytofermentans ISDg 5742101 YP_001559886.1 CDS Cphy_2787 NC_010001.1 3392857 3394113 R PFAM: tRNA synthetase class II (G H P and S); KEGG: cth:Cthe_2880 histidyl-tRNA synthetase; histidine--tRNA ligase complement(3392857..3394113) Clostridium phytofermentans ISDg 5742102 YP_001559887.1 CDS Cphy_2788 NC_010001.1 3394280 3394816 R PFAM: Recombination protein U; KEGG: gka:GK2167 recombination protein U (penicillin-binding protein related factor A); recombination protein U complement(3394280..3394816) Clostridium phytofermentans ISDg 5742103 YP_001559888.1 CDS Cphy_2789 NC_010001.1 3394840 3395880 R TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cpf:CPF_1414 pseudouridine synthase, RluA family; RluA family pseudouridine synthase complement(3394840..3395880) Clostridium phytofermentans ISDg 5742104 YP_001559889.1 CDS Cphy_2790 NC_010001.1 3395915 3396586 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tva:TVAG_463690 haloacid dehalogenase-like hydrolase family protein Pfam: Hydrolase; HAD family hydrolase complement(3395915..3396586) Clostridium phytofermentans ISDg 5742105 YP_001559890.1 CDS Cphy_2791 NC_010001.1 3396694 3397416 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: lmo:lmo2342 pseudouridylate synthase; pseudouridine synthase complement(3396694..3397416) Clostridium phytofermentans ISDg 5742106 YP_001559891.1 CDS Cphy_2792 NC_010001.1 3397438 3398904 R PFAM: Fmu (Sun) domain protein; KEGG: cth:Cthe_3160 RNA methylase, NOL1/NOP2/sun family; Fmu (Sun) domain-containing protein complement(3397438..3398904) Clostridium phytofermentans ISDg 5742107 YP_001559892.1 CDS Cphy_2793 NC_010001.1 3398988 3399791 R PFAM: RelA/SpoT domain protein; KEGG: amt:Amet_3678 RelA/SpoT domain protein; RelA/SpoT domain-containing protein complement(3398988..3399791) Clostridium phytofermentans ISDg 5742108 YP_001559893.1 CDS Cphy_2794 NC_010001.1 3399814 3401244 R TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cno:NT01CX_0361 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator complement(3399814..3401244) Clostridium phytofermentans ISDg 5742109 YP_001559894.1 CDS Cphy_2795 NC_010001.1 3401614 3402888 R TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cpr:CPR_0598 cell envelope-related transcriptional attenuator domain family; cell envelope-related transcriptional attenuator complement(3401614..3402888) Clostridium phytofermentans ISDg 5742110 YP_001559895.1 CDS Cphy_2796 NC_010001.1 3403224 3404684 R KEGG: cpe:CPE2148 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase complement(3403224..3404684) Clostridium phytofermentans ISDg 5742111 YP_001559896.1 CDS Cphy_2797 NC_010001.1 3404792 3406156 R PFAM: protein of unknown function DUF711; KEGG: mla:Mlab_1030 hypothetical protein; hypothetical protein complement(3404792..3406156) Clostridium phytofermentans ISDg 5742112 YP_001559897.1 CDS Cphy_2798 NC_010001.1 3406175 3406447 R ACT domain-containing protein; hypothetical protein complement(3406175..3406447) Clostridium phytofermentans ISDg 5742113 YP_001559898.1 CDS Cphy_2799 NC_010001.1 3406583 3407377 R PFAM: beta-lactamase domain protein; KEGG: cdf:CD3651 metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein complement(3406583..3407377) Clostridium phytofermentans ISDg 5742114 YP_001559899.1 CDS Cphy_2800 NC_010001.1 3407493 3409214 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: cth:Cthe_1282 diguanylate cyclase with GAF sensor; GAF sensor-containing diguanylate cyclase complement(3407493..3409214) Clostridium phytofermentans ISDg 5742115 YP_001559900.1 CDS Cphy_2801 NC_010001.1 3409247 3411358 R KEGG: ctc:CTC00985 cell division protein FtsA; cell division protein FtsA complement(3409247..3411358) Clostridium phytofermentans ISDg 5742116 YP_001559901.1 CDS Cphy_2802 NC_010001.1 3411739 3412359 R KEGG: tte:TTE0875 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase complement(3411739..3412359) Clostridium phytofermentans ISDg 5742117 YP_001559902.1 CDS Cphy_2803 NC_010001.1 3412480 3415464 R KEGG: cth:Cthe_0886 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I complement(3412480..3415464) Clostridium phytofermentans ISDg 5742118 YP_001559903.1 CDS Cphy_2804 NC_010001.1 3415541 3416119 R hypothetical protein complement(3415541..3416119) Clostridium phytofermentans ISDg 5742119 YP_001559904.1 CDS Cphy_2805 NC_010001.1 3417680 3418021 R KEGG: dme:Dmel_CG2839 CG2839; hypothetical protein complement(3417680..3418021) Clostridium phytofermentans ISDg 5742121 YP_001559905.1 CDS Cphy_2806 NC_010001.1 3419249 3419596 D KEGG: cbf:CLI_0985 hypothetical protein; hypothetical protein 3419249..3419596 Clostridium phytofermentans ISDg 5742122 YP_001559906.1 CDS Cphy_2807 NC_010001.1 3420322 3421581 R PFAM: glycosyl transferase family 2; KEGG: chy:CHY_0980 glycosyl transferase, group 2 family; glycosyl transferase family protein complement(3420322..3421581) Clostridium phytofermentans ISDg 5742123 YP_001559907.1 CDS Cphy_2808 NC_010001.1 3421710 3422930 R KEGG: ctc:CTC00440 alpha-clostripain-like protein; alpha-clostripain-like protein complement(3421710..3422930) Clostridium phytofermentans ISDg 5742124 YP_001559908.1 CDS Cphy_2809 NC_010001.1 3423037 3429723 R KEGG: bps:BPSS1434 membrane-anchored cell surface protein; chromosome segregation ATPase-like protein complement(3423037..3429723) Clostridium phytofermentans ISDg 5742125 YP_001559909.1 CDS Cphy_2810 NC_010001.1 3429863 3430933 R PFAM: glycosyl transferase family 2; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: amt:Amet_3406 glycosyl transferase, family 2; glycosyl transferase family protein complement(3429863..3430933) Clostridium phytofermentans ISDg 5742126 YP_001559910.1 CDS Cphy_2811 NC_010001.1 3430994 3433558 R PFAM: glycosyl transferase group 1; TPR repeat-containing protein; KEGG: dsy:DSY4437 hypothetical protein; group 1 glycosyl transferase complement(3430994..3433558) Clostridium phytofermentans ISDg 5742127 YP_001559911.1 CDS Cphy_2812 NC_010001.1 3433803 3434108 R hypothetical protein complement(3433803..3434108) Clostridium phytofermentans ISDg 5742128 YP_001559912.1 CDS Cphy_2813 NC_010001.1 3434217 3435191 R PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_C1281 glycosyl transferase; group 1 glycosyl transferase complement(3434217..3435191) Clostridium phytofermentans ISDg 5742129 YP_001559913.1 CDS Cphy_2814 NC_010001.1 3435346 3436719 R PFAM: glycosyl transferase family 2; Methyltransferase type 11; Methyltransferase type 12; KEGG: cbe:Cbei_2586 glycosyl transferase, family 2; glycosyl transferase family protein complement(3435346..3436719) Clostridium phytofermentans ISDg 5742130 YP_001559914.1 CDS Cphy_2815 NC_010001.1 3437022 3437582 D PFAM: Rubrerythrin; KEGG: cac:CAC3002 uncharacterized consrved protein, YHJR B.subtilis family; rubrerythrin 3437022..3437582 Clostridium phytofermentans ISDg 5742131 YP_001559915.1 CDS Cphy_2816 NC_010001.1 3437827 3438198 D KEGG: cbf:CLI_0985 hypothetical protein; hypothetical protein 3437827..3438198 Clostridium phytofermentans ISDg 5742132 YP_001559916.1 CDS Cphy_2817 NC_010001.1 3438599 3440215 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpf:CPF_2886 serine protease C; peptidase S8/S53 subtilisin kexin sedolisin 3438599..3440215 Clostridium phytofermentans ISDg 5742133 YP_001559917.1 CDS Cphy_2818 NC_010001.1 3440301 3440876 D PFAM: cell wall hydrolase/autolysin; KEGG: tte:TTE2424 N-acetylmuramoyl-L-alanine amidase; cell wall hydrolase/autolysin 3440301..3440876 Clostridium phytofermentans ISDg 5742134 YP_001559918.1 CDS Cphy_2819 NC_010001.1 3441069 3441824 R PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: tte:TTE1266 leader peptidase (prepilin peptidase) / N-methyltransferase; peptidase A24A domain-containing protein complement(3441069..3441824) Clostridium phytofermentans ISDg 5742135 YP_001559919.1 CDS Cphy_2820 NC_010001.1 3441936 3442688 R KEGG: spi:MGAS10750_Spy0312 pyruvate formate-lyase activating enzyme; TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein; pyruvate formate-lyase activating enzyme complement(3441936..3442688) Clostridium phytofermentans ISDg 5742136 YP_001559920.1 CDS Cphy_2821 NC_010001.1 3443075 3443323 R stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA complement(3443075..3443323) Clostridium phytofermentans ISDg 5742137 YP_001559921.1 CDS Cphy_2822 NC_010001.1 3443422 3443625 R hypothetical protein complement(3443422..3443625) Clostridium phytofermentans ISDg 5742138 YP_001559922.1 CDS Cphy_2823 NC_010001.1 3443643 3445703 R KEGG: bcy:Bcer98_0431 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate acetyltransferase complement(3443643..3445703) Clostridium phytofermentans ISDg 5742139 YP_001559923.1 CDS Cphy_2824 NC_010001.1 3446378 3447856 D PFAM: Domain of unknown function DUF1846; KEGG: spm:spyM18_1356 hypothetical protein; hypothetical protein 3446378..3447856 Clostridium phytofermentans ISDg 5742140 YP_001559924.1 CDS Cphy_2825 NC_010001.1 3448203 3449975 D TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: cth:Cthe_2810 Na/Pi-cotransporter II-related protein; Na/Pi-cotransporter II-related protein 3448203..3449975 Clostridium phytofermentans ISDg 5742141 YP_001559925.1 CDS Cphy_2826 NC_010001.1 3450089 3451450 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cth:Cthe_1599 multi-sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3450089..3451450) Clostridium phytofermentans ISDg 5742142 YP_001559926.1 CDS Cphy_2827 NC_010001.1 3451469 3452161 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1600 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(3451469..3452161) Clostridium phytofermentans ISDg 5742143 YP_001559927.1 CDS Cphy_2828 NC_010001.1 3452176 3452835 R KEGG: ctc:CTC00912 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(3452176..3452835) Clostridium phytofermentans ISDg 5742144 YP_001559928.1 CDS Cphy_2829 NC_010001.1 3452999 3454402 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sus:Acid_6283 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3452999..3454402) Clostridium phytofermentans ISDg 5742145 YP_001559929.1 CDS Cphy_2830 NC_010001.1 3454422 3455084 R TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: cth:Cthe_1601 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU complement(3454422..3455084) Clostridium phytofermentans ISDg 5742146 YP_001559930.1 CDS Cphy_2831 NC_010001.1 3455286 3456044 R KEGG: mta:Moth_0114 phosphate transport system permease 1; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase complement(3455286..3456044) Clostridium phytofermentans ISDg 5742147 YP_001559931.1 CDS Cphy_2832 NC_010001.1 3456049 3456933 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_0606 phosphate ABC transporter, permease; phosphate ABC transporter, inner membrane subunit PstA complement(3456049..3456933) Clostridium phytofermentans ISDg 5742148 YP_001559932.1 CDS Cphy_2833 NC_010001.1 3456957 3457922 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VVA0370 ABC-type phosphate transport system, permease component; phosphate ABC transporter permease complement(3456957..3457922) Clostridium phytofermentans ISDg 5742149 YP_001559933.1 CDS Cphy_2834 NC_010001.1 3458169 3459092 R TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: drm:Dred_2106 phosphate binding protein; phosphate binding protein complement(3458169..3459092) Clostridium phytofermentans ISDg 5742150 YP_001559934.1 CDS Cphy_2835 NC_010001.1 3459444 3461285 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cdf:CD1476 signaling protein; diguanylate cyclase/phosphodiesterase complement(3459444..3461285) Clostridium phytofermentans ISDg 5742151 YP_001559935.1 CDS Cphy_2836 NC_010001.1 3461725 3463476 R PFAM: Peptidoglycan-binding LysM; KEGG: mtc:MT0291.4 hypothetical protein; peptidoglycan-binding LysM complement(3461725..3463476) Clostridium phytofermentans ISDg 5742152 YP_001559936.1 CDS Cphy_2837 NC_010001.1 3463755 3468050 D TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cth:Cthe_1329 CoA-substrate-specific enzyme activase; CoA-substrate-specific enzyme activase 3463755..3468050 Clostridium phytofermentans ISDg 5742153 YP_001559937.1 CDS Cphy_2838 NC_010001.1 3468220 3470802 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: pth:PTH_0142 hypothetical protein; multi-sensor hybrid histidine kinase 3468220..3470802 Clostridium phytofermentans ISDg 5742154 YP_001559938.1 CDS Cphy_2839 NC_010001.1 3470925 3471602 R TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: gka:GK3421 uracil-DNA glycosylase; uracil-DNA glycosylase complement(3470925..3471602) Clostridium phytofermentans ISDg 5742155 YP_001559939.1 CDS Cphy_2840 NC_010001.1 3471604 3472380 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(3471604..3472380) Clostridium phytofermentans ISDg 5742156 YP_001559940.1 CDS hisH NC_010001.1 3472389 3473003 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(3472389..3473003) Clostridium phytofermentans ISDg 5742157 YP_001559941.1 CDS Cphy_2842 NC_010001.1 3473425 3475293 R KEGG: ehi:82.t00025 viral A-type inclusion protein repeat, Pfam: Nha1_C DUF148 ERM Prefoldin_2 WXG100 Vicilin_N TBPIP Myosin_tail_1 Filament YscO Bacillus_HBL EzrA DUF948 Rab5-bind Laminin_I MpPF2 Vps51 MSG Spectrin LMP PROSITE: GLU_RICH LYS_RICH; hypothetical protein complement(3473425..3475293) Clostridium phytofermentans ISDg 5742158 YP_001559942.1 CDS Cphy_2843 NC_010001.1 3475326 3476234 R PFAM: response regulator receiver; CheW domain protein; KEGG: amt:Amet_2732 CheW protein; response regulator receiver modulated CheW protein complement(3475326..3476234) Clostridium phytofermentans ISDg 5742159 YP_001559943.1 CDS Cphy_2844 NC_010001.1 3476824 3478206 R PFAM: aminotransferase class V; KEGG: cbe:Cbei_0585 cysteine desulfurase; cysteine desulfurase complement(3476824..3478206) Clostridium phytofermentans ISDg 5742160 YP_001559944.1 CDS Cphy_2845 NC_010001.1 3484852 3486042 D KEGG: cbf:CLI_0727 hypothetical protein; hypothetical protein 3484852..3486042 Clostridium phytofermentans ISDg 5742165 YP_001559945.1 CDS Cphy_2846 NC_010001.1 3486359 3488224 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 3486359..3488224 Clostridium phytofermentans ISDg 5742166 YP_001559946.1 CDS Cphy_2847 NC_010001.1 3488737 3490245 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 3488737..3490245 Clostridium phytofermentans ISDg 5742167 YP_001559947.1 CDS Cphy_2848 NC_010001.1 3490641 3492104 R PFAM: glycoside hydrolase family 4; KEGG: csc:Csac_2748 glycoside hydrolase, family 4; glycoside hydrolase family protein complement(3490641..3492104) Clostridium phytofermentans ISDg 5742168 YP_001559948.1 CDS Cphy_2849 NC_010001.1 3492314 3493177 R PFAM: NLP/P60 protein; KEGG: cno:NT01CX_2157 N-acetylmuramoyl-L-alanine amidase CwlL precursor (cellwall hydrolase) (autolysin); NLP/P60 protein complement(3492314..3493177) Clostridium phytofermentans ISDg 5742169 YP_001559949.1 CDS Cphy_2850 NC_010001.1 3493177 3493494 R TIGRFAM: phage holin, LL-H family; PFAM: holin LL-H; KEGG: amt:Amet_2546 hypothetical protein; phage holin complement(3493177..3493494) Clostridium phytofermentans ISDg 5742170 YP_001559950.1 CDS Cphy_2851 NC_010001.1 3500321 3500605 R KEGG: cno:NT01CX_1180 hypothetical protein; hypothetical protein complement(3500321..3500605) Clostridium phytofermentans ISDg 5745124 YP_001559951.1 CDS Cphy_2852 NC_010001.1 3500994 3501383 R hypothetical protein complement(3500994..3501383) Clostridium phytofermentans ISDg 5745125 YP_001559952.1 CDS Cphy_2853 NC_010001.1 3501425 3502117 R hypothetical protein complement(3501425..3502117) Clostridium phytofermentans ISDg 5745126 YP_001559953.1 CDS Cphy_2854 NC_010001.1 3502213 3503712 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cbe:Cbei_1732 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3502213..3503712) Clostridium phytofermentans ISDg 5745127 YP_001559954.1 CDS Cphy_2855 NC_010001.1 3503712 3504386 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbe:Cbei_1731 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(3503712..3504386) Clostridium phytofermentans ISDg 5745128 YP_001559955.1 CDS Cphy_2856 NC_010001.1 3504707 3505006 R hypothetical protein complement(3504707..3505006) Clostridium phytofermentans ISDg 5745129 YP_001559956.1 CDS Cphy_2857 NC_010001.1 3505060 3505872 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: lbr:LVIS_1174 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidylprolyl isomerase complement(3505060..3505872) Clostridium phytofermentans ISDg 5745130 YP_001559957.1 CDS Cphy_2858 NC_010001.1 3506210 3506770 D PFAM: thymidine kinase; KEGG: hdu:HD1473 thymidine kinase; thymidine kinase 3506210..3506770 Clostridium phytofermentans ISDg 5745131 YP_001559958.1 CDS Cphy_2859 NC_010001.1 3508472 3509422 D PFAM: helix-turn-helix domain protein; KEGG: btk:BT9727_1061 probable transcriptional regulator; helix-turn-helix domain-containing protein 3508472..3509422 Clostridium phytofermentans ISDg 5745133 YP_001559959.1 CDS Cphy_2860 NC_010001.1 3509560 3509970 R PFAM: response regulator receiver; KEGG: cdf:CD0533 chemotaxis protein; response regulator receiver protein complement(3509560..3509970) Clostridium phytofermentans ISDg 5745134 YP_001559960.1 CDS Cphy_2861 NC_010001.1 3510427 3510669 R hypothetical protein complement(3510427..3510669) Clostridium phytofermentans ISDg 5745135 YP_001559961.1 CDS Cphy_2862 NC_010001.1 3511058 3512362 R KEGG: cth:Cthe_1311 signal transduction histidine kinase regulating citrate/malate metabolism; signal transduction histidine kinase regulating citrate/malate metabolism complement(3511058..3512362) Clostridium phytofermentans ISDg 5745136 YP_001559962.1 CDS Cphy_2863 NC_010001.1 3512763 3512966 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sae:NWMN_2605 cold shock protein CspB; cold-shock DNA-binding domain-containing protein 3512763..3512966 Clostridium phytofermentans ISDg 5745137 YP_001559963.1 CDS Cphy_2864 NC_010001.1 3513222 3514868 R catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase complement(3513222..3514868) Clostridium phytofermentans ISDg 5745138 YP_001559964.1 CDS Cphy_2865 NC_010001.1 3514882 3515346 R TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: tte:TTE0985 tmRNA-binding protein; SsrA-binding protein complement(3514882..3515346) Clostridium phytofermentans ISDg 5745139 YP_001559965.1 CDS Cphy_2866 NC_010001.1 3515369 3517519 R KEGG: ctc:CTC00384 exoribonuclease II; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein; ribonuclease R complement(3515369..3517519) Clostridium phytofermentans ISDg 5745140 YP_001559966.1 CDS Cphy_2867 NC_010001.1 3518073 3518318 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: csc:Csac_1317 preprotein translocase, SecG subunit; preprotein translocase subunit SecG complement(3518073..3518318) Clostridium phytofermentans ISDg 5745141 YP_001559967.1 CDS Cphy_2868 NC_010001.1 3518398 3519942 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(3518398..3519942) Clostridium phytofermentans ISDg 5745142 YP_001559968.1 CDS Cphy_2869 NC_010001.1 3520215 3521570 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cpf:CPF_1409 MATE efflux family protein; MATE efflux family protein complement(3520215..3521570) Clostridium phytofermentans ISDg 5745143 YP_001559969.1 CDS Cphy_2870 NC_010001.1 3521814 3522695 R PFAM: protein of unknown function DUF6 transmembrane; sugar transport family protein; KEGG: cbh:CLC_0948 drug/metabolite transporter, DMT family; hypothetical protein complement(3521814..3522695) Clostridium phytofermentans ISDg 5745144 YP_001559970.1 CDS Cphy_2873 NC_010001.1 3525595 3526302 D KEGG: tde:TDE2413 hypothetical protein; hypothetical protein 3525595..3526302 Clostridium phytofermentans ISDg 5745146 YP_001559971.1 CDS tpiA NC_010001.1 3526472 3527218 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(3526472..3527218) Clostridium phytofermentans ISDg 5745147 YP_001559972.1 CDS pgk NC_010001.1 3527355 3528548 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(3527355..3528548) Clostridium phytofermentans ISDg 5745148 YP_001559973.1 CDS Cphy_2876 NC_010001.1 3528731 3529741 R KEGG: fth:FTH_1121 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I complement(3528731..3529741) Clostridium phytofermentans ISDg 5745149 YP_001559974.1 CDS Cphy_2877 NC_010001.1 3530109 3530705 R TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: ana:alr2975 signal peptidase I; signal peptidase I complement(3530109..3530705) Clostridium phytofermentans ISDg 5745150 YP_001559975.1 CDS Cphy_2878 NC_010001.1 3530717 3531322 R KEGG: cbh:CLC_2291 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I complement(3530717..3531322) Clostridium phytofermentans ISDg 5745151 YP_001559976.1 CDS Cphy_2879 NC_010001.1 3531402 3531650 R TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: amt:Amet_2789 DNA-directed RNA polymerase, omega subunit; DNA-directed RNA polymerase subunit omega complement(3531402..3531650) Clostridium phytofermentans ISDg 5745152 YP_001559977.1 CDS Cphy_2880 NC_010001.1 3531687 3531962 R PFAM: protein of unknown function DUF370; KEGG: bay:RBAM_015500 YlzA; hypothetical protein complement(3531687..3531962) Clostridium phytofermentans ISDg 5745153 YP_001559978.1 CDS Cphy_2881 NC_010001.1 3531975 3532853 R PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: cpr:CPR_1721 conserved hypothetical protein TIGR00255; hypothetical protein complement(3531975..3532853) Clostridium phytofermentans ISDg 5745154 YP_001559979.1 CDS Cphy_2882 NC_010001.1 3533119 3534075 R KEGG: cbe:Cbei_2464 GTPase (G3E family)-like protein; G3E family GTPase-like protein complement(3533119..3534075) Clostridium phytofermentans ISDg 5745155 YP_001559980.1 CDS Cphy_2883 NC_010001.1 3534176 3535258 R PFAM: cobalamin synthesis protein P47K; KEGG: cbe:Cbei_2463 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K complement(3534176..3535258) Clostridium phytofermentans ISDg 5745156 YP_001559981.1 CDS Cphy_2884 NC_010001.1 3535606 3537504 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cdf:CD1666 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(3535606..3537504) Clostridium phytofermentans ISDg 5745157 YP_001559982.1 CDS Cphy_2885 NC_010001.1 3537625 3538923 R PFAM: major facilitator superfamily MFS_1; KEGG: pab:PAB2174 hypothetical protein; major facilitator transporter complement(3537625..3538923) Clostridium phytofermentans ISDg 5745158 YP_001559983.1 CDS Cphy_2886 NC_010001.1 3539209 3541755 R KEGG: mba:Mbar_A0504 hypothetical protein; hypothetical protein complement(3539209..3541755) Clostridium phytofermentans ISDg 5745159 YP_001559984.1 CDS Cphy_2887 NC_010001.1 3541987 3542730 R PFAM: glycosyl transferase family 2; KEGG: pth:PTH_1466 glycosyltransferases; glycosyl transferase family protein complement(3541987..3542730) Clostridium phytofermentans ISDg 5745160 YP_001559985.1 CDS Cphy_2888 NC_010001.1 3542889 3543983 R KEGG: msi:Msm_1502 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; UDP-galactopyranose mutase complement(3542889..3543983) Clostridium phytofermentans ISDg 5745161 YP_001559986.1 CDS Cphy_2889 NC_010001.1 3544001 3546097 R KEGG: cth:Cthe_2151 hypothetical protein; hypothetical protein complement(3544001..3546097) Clostridium phytofermentans ISDg 5745162 YP_001559987.1 CDS Cphy_2890 NC_010001.1 3546243 3548279 R KEGG: amt:Amet_2770 ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecG complement(3546243..3548279) Clostridium phytofermentans ISDg 5745163 YP_001559988.1 CDS Cphy_2891 NC_010001.1 3548685 3550367 R PFAM: Dak phosphatase; KEGG: amt:Amet_2771 Dak phosphatase; Dak phosphatase complement(3548685..3550367) Clostridium phytofermentans ISDg 5745164 YP_001559989.1 CDS Cphy_2892 NC_010001.1 3550388 3550744 R PFAM: protein of unknown function DUF322; KEGG: oih:OB1515 hypothetical protein; hypothetical protein complement(3550388..3550744) Clostridium phytofermentans ISDg 5745165 YP_001559990.1 CDS Cphy_2893 NC_010001.1 3551249 3551446 R PFAM: ribosomal protein L28; KEGG: swo:Swol_0757 50S ribosomal protein L28; 50S ribosomal protein L28 complement(3551249..3551446) Clostridium phytofermentans ISDg 5745166 YP_001559991.1 CDS Cphy_2894 NC_010001.1 3551616 3552029 R KEGG: swo:Swol_1906 hypothetical protein; hypothetical protein complement(3551616..3552029) Clostridium phytofermentans ISDg 5745167 YP_001559992.1 CDS Cphy_2895 NC_010001.1 3552029 3553351 R KEGG: tva:TVAG_264660 hypothetical protein Pfam: RNA_polI_A34 MAP7 FYDLN_acid PROSITE: ASP_RICH GLU_RICH LYS_RICH; hypothetical protein complement(3552029..3553351) Clostridium phytofermentans ISDg 5743955 YP_001559993.1 CDS Cphy_2896 NC_010001.1 3553393 3553701 R hypothetical protein complement(3553393..3553701) Clostridium phytofermentans ISDg 5743956 YP_001559994.1 CDS Cphy_2897 NC_010001.1 3553805 3555202 R KEGG: tte:TTE1994 hypothetical protein; hypothetical protein complement(3553805..3555202) Clostridium phytofermentans ISDg 5743957 YP_001559995.1 CDS Cphy_2898 NC_010001.1 3555322 3556476 R hypothetical protein complement(3555322..3556476) Clostridium phytofermentans ISDg 5743958 YP_001559996.1 CDS Cphy_2899 NC_010001.1 3556463 3557668 R KEGG: oih:OB2135 ABC-2 type transport system permease; hypothetical protein complement(3556463..3557668) Clostridium phytofermentans ISDg 5743959 YP_001559997.1 CDS Cphy_2900 NC_010001.1 3557688 3559112 R KEGG: cdf:CD3394 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase complement(3557688..3559112) Clostridium phytofermentans ISDg 5743960 YP_001559998.1 CDS Cphy_2901 NC_010001.1 3559130 3560023 R KEGG: cno:NT01CX_0663 hypothetical protein; hypothetical protein complement(3559130..3560023) Clostridium phytofermentans ISDg 5743961 YP_001559999.1 CDS Cphy_2902 NC_010001.1 3560380 3562164 D PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein; fibronectin-binding A domain-containing protein 3560380..3562164 Clostridium phytofermentans ISDg 5743962 YP_001560000.1 CDS Cphy_2903 NC_010001.1 3562210 3563034 D KEGG: csc:Csac_2251 histidinol phosphate phosphatase HisJ family; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; HisJ family histidinol phosphate phosphatase 3562210..3563034 Clostridium phytofermentans ISDg 5743963 YP_001560001.1 CDS Cphy_2904 NC_010001.1 3563268 3563867 D PFAM: protein of unknown function DUF925; KEGG: cps:CPS_3132 hypothetical protein; hypothetical protein 3563268..3563867 Clostridium phytofermentans ISDg 5743964 YP_001560002.1 CDS mnmA NC_010001.1 3564067 3565140 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(3564067..3565140) Clostridium phytofermentans ISDg 5743965 YP_001560003.1 CDS Cphy_2906 NC_010001.1 3565460 3565900 R TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein; KEGG: amt:Amet_2454 nitrogen-fixing NifU domain protein; FeS cluster assembly scaffold protein NifU complement(3565460..3565900) Clostridium phytofermentans ISDg 5743966 YP_001560004.1 CDS Cphy_2907 NC_010001.1 3565952 3567148 R KEGG: cth:Cthe_0720 aminotransferase, class V; TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; cysteine desulfurase NifS complement(3565952..3567148) Clostridium phytofermentans ISDg 5743967 YP_001560005.1 CDS Cphy_2908 NC_010001.1 3567690 3569219 D PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: cth:Cthe_2688 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 3567690..3569219 Clostridium phytofermentans ISDg 5743968 YP_001560006.1 CDS Cphy_2909 NC_010001.1 3569537 3571480 R KEGG: gsu:GSU2377 hypothetical protein; hypothetical protein complement(3569537..3571480) Clostridium phytofermentans ISDg 5743969 YP_001560007.1 CDS Cphy_2910 NC_010001.1 3571870 3572451 R hypothetical protein complement(3571870..3572451) Clostridium phytofermentans ISDg 5743970 YP_001560008.1 CDS Cphy_2911 NC_010001.1 3572903 3574168 R PFAM: cytochrome P450; KEGG: cac:CAC3330 cytochrome P450 family protein, YBDT B.subtilis ortholog; cytochrome P450 complement(3572903..3574168) Clostridium phytofermentans ISDg 5743971 YP_001560009.1 CDS Cphy_2912 NC_010001.1 3574460 3575062 R PFAM: helix-turn-helix domain protein; KEGG: dsy:DSY3594 hypothetical protein; XRE family transcriptional regulator complement(3574460..3575062) Clostridium phytofermentans ISDg 5743972 YP_001560010.1 CDS Cphy_2913 NC_010001.1 3575225 3575569 R KEGG: dsy:DSY3591 hypothetical protein; hypothetical protein complement(3575225..3575569) Clostridium phytofermentans ISDg 5743973 YP_001560011.1 CDS Cphy_2914 NC_010001.1 3575690 3576487 R KEGG: bad:BAD_0608 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; pyrroline-5-carboxylate reductase complement(3575690..3576487) Clostridium phytofermentans ISDg 5743974 YP_001560012.1 CDS Cphy_2915 NC_010001.1 3576731 3578425 R PFAM: amine oxidase; KEGG: cbe:Cbei_4105 amine oxidase; amine oxidase complement(3576731..3578425) Clostridium phytofermentans ISDg 5743975 YP_001560013.1 CDS Cphy_2916 NC_010001.1 3578561 3578980 R KEGG: bth:BT_4485 hypothetical protein; hypothetical protein complement(3578561..3578980) Clostridium phytofermentans ISDg 5743976 YP_001560014.1 CDS Cphy_2917 NC_010001.1 3578946 3579290 R PFAM: protein of unknown function DUF419; KEGG: bay:RBAM_005300 hypothetical protein; hypothetical protein complement(3578946..3579290) Clostridium phytofermentans ISDg 5743977 YP_001560015.1 CDS Cphy_2918 NC_010001.1 3579746 3580780 R hypothetical protein complement(3579746..3580780) Clostridium phytofermentans ISDg 5743978 YP_001560016.1 CDS Cphy_2919 NC_010001.1 3581335 3582351 D PFAM: protein of unknown function DUF1565; KEGG: sde:Sde_2946 hypothetical protein; hypothetical protein 3581335..3582351 Clostridium phytofermentans ISDg 5743979 YP_001560017.1 CDS Cphy_2920 NC_010001.1 3583103 3583891 R KEGG: spd:SPD_0495 hypothetical protein; hypothetical protein complement(3583103..3583891) Clostridium phytofermentans ISDg 5743980 YP_001560018.1 CDS Cphy_2921 NC_010001.1 3584404 3585351 R hypothetical protein complement(3584404..3585351) Clostridium phytofermentans ISDg 5743981 YP_001560019.1 CDS Cphy_2922 NC_010001.1 3585326 3587308 R PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: ppe:PEPE_0535 superfamily II DNA/RNA helicase, SNF2 family; SNF2-related protein complement(3585326..3587308) Clostridium phytofermentans ISDg 5743982 YP_001560020.1 CDS Cphy_2923 NC_010001.1 3587313 3588605 R KEGG: bad:BAD_1231 hypothetical protein; hypothetical protein complement(3587313..3588605) Clostridium phytofermentans ISDg 5743983 YP_001560021.1 CDS Cphy_2924 NC_010001.1 3588609 3590222 R TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: mbu:Mbur_1539 DNA-cytosine methyltransferase; DNA-cytosine methyltransferase complement(3588609..3590222) Clostridium phytofermentans ISDg 5743984 YP_001560022.1 CDS Cphy_2925 NC_010001.1 3591098 3592003 R PFAM: homoserine O-succinyltransferase; KEGG: bha:BH2280 homoserine O-succinyltransferase; homoserine O-succinyltransferase complement(3591098..3592003) Clostridium phytofermentans ISDg 5743985 YP_001560023.1 CDS Cphy_2927 NC_010001.1 3593611 3595572 R KEGG: cac:CAC2673 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase; NAD-dependent DNA ligase complement(3593611..3595572) Clostridium phytofermentans ISDg 5743987 YP_001560024.1 CDS Cphy_2928 NC_010001.1 3595764 3597197 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cpe:CPE2313 pseudouridylate synthase; pseudouridine synthase complement(3595764..3597197) Clostridium phytofermentans ISDg 5743988 YP_001560025.1 CDS Cphy_2929 NC_010001.1 3597747 3597977 R hypothetical protein complement(3597747..3597977) Clostridium phytofermentans ISDg 5743989 YP_001560026.1 CDS Cphy_2930 NC_010001.1 3599017 3599754 D hypothetical protein 3599017..3599754 Clostridium phytofermentans ISDg 5743991 YP_001560027.1 CDS Cphy_2931 NC_010001.1 3600051 3600971 R hypothetical protein complement(3600051..3600971) Clostridium phytofermentans ISDg 5743992 YP_001560028.1 CDS Cphy_2932 NC_010001.1 3601595 3602392 R KEGG: cbf:CLI_1258 hypothetical protein; hypothetical protein complement(3601595..3602392) Clostridium phytofermentans ISDg 5743993 YP_001560029.1 CDS Cphy_2933 NC_010001.1 3602434 3604077 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cth:Cthe_0408 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); diguanylate cyclase/phosphodiesterase complement(3602434..3604077) Clostridium phytofermentans ISDg 5743994 YP_001560030.1 CDS Cphy_2934 NC_010001.1 3604722 3606101 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase complement(3604722..3606101) Clostridium phytofermentans ISDg 5743995 YP_001560031.1 CDS Cphy_2935 NC_010001.1 3606114 3607004 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cno:NT01CX_0467 glutamate synthase, small subunit; ferredoxin-NADP(+) reductase subunit alpha complement(3606114..3607004) Clostridium phytofermentans ISDg 5743996 YP_001560032.1 CDS Cphy_2936 NC_010001.1 3607450 3609303 D KEGG: cth:Cthe_0556 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; asparagine synthase 3607450..3609303 Clostridium phytofermentans ISDg 5743997 YP_001560033.1 CDS Cphy_2937 NC_010001.1 3609559 3610320 R PFAM: ATP-binding region ATPase domain protein; KEGG: amt:Amet_0102 signal transduction histidine kinase regulating citrate/malate metabolism; signal transduction histidine kinase regulating citrate/malate metabolism complement(3609559..3610320) Clostridium phytofermentans ISDg 5743998 YP_001560034.1 CDS Cphy_2938 NC_010001.1 3610313 3611035 R PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: amt:Amet_3563 two component transcriptional regulator, LytTR family; LytTR family two component transcriptional regulator complement(3610313..3611035) Clostridium phytofermentans ISDg 5743999 YP_001560035.1 CDS Cphy_2939 NC_010001.1 3611076 3612014 R PFAM: band 7 protein; KEGG: fnu:FN1549 stomatin like protein; hypothetical protein complement(3611076..3612014) Clostridium phytofermentans ISDg 5744000 YP_001560036.1 CDS Cphy_2940 NC_010001.1 3612016 3612456 R PFAM: protein of unknown function DUF107; KEGG: aau:AAur_2191 integral membrane protein; hypothetical protein complement(3612016..3612456) Clostridium phytofermentans ISDg 5744001 YP_001560037.1 CDS Cphy_2941 NC_010001.1 3612634 3614100 R KEGG: san:gbs0669 hypothetical protein; hypothetical protein complement(3612634..3614100) Clostridium phytofermentans ISDg 5744002 YP_001560038.1 CDS Cphy_2942 NC_010001.1 3614314 3615204 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: cpf:CPF_1412 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase 3614314..3615204 Clostridium phytofermentans ISDg 5744003 YP_001560039.1 CDS Cphy_2943 NC_010001.1 3615256 3615507 D KEGG: cpf:CPF_1567 hypothetical protein; hypothetical protein 3615256..3615507 Clostridium phytofermentans ISDg 5744004 YP_001560040.1 CDS Cphy_2944 NC_010001.1 3615543 3616220 R KEGG: dsy:DSY4643 hypothetical protein; hypothetical protein complement(3615543..3616220) Clostridium phytofermentans ISDg 5744005 YP_001560041.1 CDS Cphy_2945 NC_010001.1 3616223 3616636 R TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: cth:Cthe_1704 toxin secretion/phage lysis holin; toxin secretion/phage lysis holin complement(3616223..3616636) Clostridium phytofermentans ISDg 5744006 YP_001560042.1 CDS Cphy_2946 NC_010001.1 3616865 3617200 R hypothetical protein complement(3616865..3617200) Clostridium phytofermentans ISDg 5744007 YP_001560043.1 CDS Cphy_2947 NC_010001.1 3617200 3618192 R KEGG: tva:TVAG_050640 BNR/Asp-box repeat family protein; hypothetical protein complement(3617200..3618192) Clostridium phytofermentans ISDg 5744008 YP_001560044.1 CDS Cphy_2948 NC_010001.1 3618204 3618608 R KEGG: ckl:CKL_3246 hypothetical protein; hypothetical protein complement(3618204..3618608) Clostridium phytofermentans ISDg 5744009 YP_001560045.1 CDS Cphy_2949 NC_010001.1 3618608 3619150 R KEGG: cdf:CD2899 phage protein; hypothetical protein complement(3618608..3619150) Clostridium phytofermentans ISDg 5744010 YP_001560046.1 CDS Cphy_2950 NC_010001.1 3619140 3620219 R PFAM: Baseplate J family protein; KEGG: cdf:CD2900 phage tail protein; baseplate J family protein complement(3619140..3620219) Clostridium phytofermentans ISDg 5744011 YP_001560047.1 CDS Cphy_2951 NC_010001.1 3620222 3620614 R KEGG: cdf:CD2901 phage protein; phage protein complement(3620222..3620614) Clostridium phytofermentans ISDg 5744012 YP_001560048.1 CDS Cphy_2952 NC_010001.1 3620614 3620937 R KEGG: dsy:DSY3951 hypothetical protein; hypothetical protein complement(3620614..3620937) Clostridium phytofermentans ISDg 5744013 YP_001560049.1 CDS Cphy_2953 NC_010001.1 3620921 3621877 R KEGG: cdf:CD2903 phage cell wall hydrolase; phage cell wall hydrolase complement(3620921..3621877) Clostridium phytofermentans ISDg 5744014 YP_001560050.1 CDS Cphy_2954 NC_010001.1 3621795 3622733 R PFAM: Peptidoglycan-binding LysM; KEGG: cdf:CD2904 phage cell wall hydrolase; peptidoglycan-binding LysM complement(3621795..3622733) Clostridium phytofermentans ISDg 5744015 YP_001560051.1 CDS Cphy_2955 NC_010001.1 3622743 3624881 R KEGG: cbo:CBO1737 phage protein; hypothetical protein complement(3622743..3624881) Clostridium phytofermentans ISDg 5744016 YP_001560052.1 CDS Cphy_2956 NC_010001.1 3625070 3625501 R PFAM: XkdN-like protein; KEGG: cdf:CD2908 phage protein; XkdN-like protein complement(3625070..3625501) Clostridium phytofermentans ISDg 5744017 YP_001560053.1 CDS Cphy_2957 NC_010001.1 3625572 3626045 R KEGG: cdf:CD2909 phage protein; phage protein complement(3625572..3626045) Clostridium phytofermentans ISDg 5744018 YP_001560054.1 CDS Cphy_2958 NC_010001.1 3626064 3627371 R KEGG: cdf:CD2910 phage protein; phage protein complement(3626064..3627371) Clostridium phytofermentans ISDg 5744019 YP_001560055.1 CDS Cphy_2959 NC_010001.1 3627374 3627553 R KEGG: cdf:CD2910A hypothetical protein; hypothetical protein complement(3627374..3627553) Clostridium phytofermentans ISDg 5744020 YP_001560056.1 CDS Cphy_2960 NC_010001.1 3627560 3627985 R KEGG: cdf:CD2911 phage protein; phage protein complement(3627560..3627985) Clostridium phytofermentans ISDg 5744021 YP_001560057.1 CDS Cphy_2961 NC_010001.1 3627982 3628440 R KEGG: cdf:CD2912 phage protein; phage protein complement(3627982..3628440) Clostridium phytofermentans ISDg 5744022 YP_001560058.1 CDS Cphy_2962 NC_010001.1 3628440 3628814 R KEGG: cdf:CD2913 phage protein; phage protein complement(3628440..3628814) Clostridium phytofermentans ISDg 5744023 YP_001560059.1 CDS Cphy_2963 NC_010001.1 3628811 3629158 R KEGG: cbf:CLI_2413 hypothetical protein; hypothetical protein complement(3628811..3629158) Clostridium phytofermentans ISDg 5744024 YP_001560060.1 CDS Cphy_2964 NC_010001.1 3629170 3630177 R KEGG: cbf:CLI_2414 phage coat protein; phage coat protein complement(3629170..3630177) Clostridium phytofermentans ISDg 5744025 YP_001560061.1 CDS Cphy_2965 NC_010001.1 3630197 3630799 R KEGG: cno:NT01CX_2174 scaffold protein; hypothetical protein complement(3630197..3630799) Clostridium phytofermentans ISDg 5744026 YP_001560062.1 CDS Cphy_2966 NC_010001.1 3630957 3631217 R KEGG: lin:lin0103 hypothetical protein; hypothetical protein complement(3630957..3631217) Clostridium phytofermentans ISDg 5744027 YP_001560063.1 CDS Cphy_2967 NC_010001.1 3631397 3631768 R hypothetical protein complement(3631397..3631768) Clostridium phytofermentans ISDg 5744028 YP_001560064.1 CDS Cphy_2968 NC_010001.1 3631804 3632031 R KEGG: cpf:CPF_0953 hypothetical protein; hypothetical protein complement(3631804..3632031) Clostridium phytofermentans ISDg 5744029 YP_001560065.1 CDS Cphy_2969 NC_010001.1 3632037 3633593 R TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7; KEGG: cdf:CD2920 phage protein; SPP1 family phage head morphogenesis protein complement(3632037..3633593) Clostridium phytofermentans ISDg 5744030 YP_001560066.1 CDS Cphy_2970 NC_010001.1 3633580 3634968 R TIGRFAM: phage portal protein, SPP1 family; PFAM: portal protein SPP1; KEGG: lga:LGAS_0668 phage portal protein, SPP1 GP6-like; SPP1 family phage portal protein complement(3633580..3634968) Clostridium phytofermentans ISDg 5744031 YP_001560067.1 CDS Cphy_2971 NC_010001.1 3635219 3636634 R TIGRFAM: phage uncharacterized protein; KEGG: cbf:CLI_2421 hypothetical protein; phage protein complement(3635219..3636634) Clostridium phytofermentans ISDg 5744032 YP_001560068.1 CDS Cphy_2972 NC_010001.1 3636624 3637196 R KEGG: bha:BH3534 hypothetical protein; hypothetical protein complement(3636624..3637196) Clostridium phytofermentans ISDg 5744033 YP_001560069.1 CDS Cphy_2973 NC_010001.1 3637537 3637863 R hypothetical protein complement(3637537..3637863) Clostridium phytofermentans ISDg 5744034 YP_001560070.1 CDS Cphy_2974 NC_010001.1 3637889 3638503 R hypothetical protein complement(3637889..3638503) Clostridium phytofermentans ISDg 5744035 YP_001560071.1 CDS Cphy_2975 NC_010001.1 3639201 3639698 R KEGG: drm:Dred_2611 hypothetical protein; hypothetical protein complement(3639201..3639698) Clostridium phytofermentans ISDg 5744037 YP_001560072.1 CDS Cphy_2976 NC_010001.1 3639930 3640382 D hypothetical protein 3639930..3640382 Clostridium phytofermentans ISDg 5744038 YP_001560073.1 CDS Cphy_2977 NC_010001.1 3641421 3642266 D KEGG: pgi:PG0854 hypothetical protein; hypothetical protein 3641421..3642266 Clostridium phytofermentans ISDg 5744039 YP_001560074.1 CDS Cphy_2978 NC_010001.1 3642328 3642540 R hypothetical protein complement(3642328..3642540) Clostridium phytofermentans ISDg 5744040 YP_001560075.1 CDS Cphy_2979 NC_010001.1 3642565 3642954 R transcriptional regulator CdaR complement(3642565..3642954) Clostridium phytofermentans ISDg 5744041 YP_001560076.1 CDS Cphy_2980 NC_010001.1 3643139 3643879 R hypothetical protein complement(3643139..3643879) Clostridium phytofermentans ISDg 5744042 YP_001560077.1 CDS Cphy_2981 NC_010001.1 3643882 3644262 R hypothetical protein complement(3643882..3644262) Clostridium phytofermentans ISDg 5744043 YP_001560078.1 CDS Cphy_2982 NC_010001.1 3644450 3645715 R hypothetical protein complement(3644450..3645715) Clostridium phytofermentans ISDg 5744044 YP_001560079.1 CDS Cphy_2983 NC_010001.1 3645696 3645974 R hypothetical protein complement(3645696..3645974) Clostridium phytofermentans ISDg 5744045 YP_001560080.1 CDS Cphy_2984 NC_010001.1 3646294 3648168 R KEGG: drm:Dred_2613 superfamily II helicase and inactivated derivatives-like protein; superfamily II helicase complement(3646294..3648168) Clostridium phytofermentans ISDg 5744046 YP_001560081.1 CDS Cphy_2985 NC_010001.1 3648165 3648665 R PFAM: zinc finger CHC2-family protein; KEGG: ppd:Ppro_0215 zinc finger, CHC2-family protein; zinc finger CHC2-family protein complement(3648165..3648665) Clostridium phytofermentans ISDg 5744047 YP_001560082.1 CDS Cphy_2986 NC_010001.1 3648655 3649155 R hypothetical protein complement(3648655..3649155) Clostridium phytofermentans ISDg 5744048 YP_001560083.1 CDS Cphy_2987 NC_010001.1 3649175 3649600 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cno:NT01CX_0884 single-stranded DNA binding protein; single-strand binding protein complement(3649175..3649600) Clostridium phytofermentans ISDg 5744049 YP_001560084.1 CDS Cphy_2988 NC_010001.1 3649600 3650316 R KEGG: sgl:SG0930 hypothetical protein; hypothetical protein complement(3649600..3650316) Clostridium phytofermentans ISDg 5744050 YP_001560085.1 CDS Cphy_2989 NC_010001.1 3650329 3651438 R KEGG: tva:TVAG_368940 Kelch motif family protein Pfam: RhoGEF Kelch_1 Kelch_2 RNA_polI_A34 U79_P34 TolA DUF1217 PROSITE: PENTAXIN GLU_RICH LYS_RICH DH_2; hypothetical protein complement(3650329..3651438) Clostridium phytofermentans ISDg 5744051 YP_001560086.1 CDS Cphy_2990 NC_010001.1 3651441 3652079 R hypothetical protein complement(3651441..3652079) Clostridium phytofermentans ISDg 5744052 YP_001560087.1 CDS Cphy_2991 NC_010001.1 3652072 3652677 R SMART: metal-dependent phosphohydrolase HD region; KEGG: cac:CAC1938 predicted HD superfamily hydrolase; metal dependent phosphohydrolase complement(3652072..3652677) Clostridium phytofermentans ISDg 5744053 YP_001560088.1 CDS Cphy_2992 NC_010001.1 3652818 3653081 R TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: oih:OB0045 transcriptional pleiotropic regulator of transition state genes; AbrB family transcriptional regulator complement(3652818..3653081) Clostridium phytofermentans ISDg 5744054 YP_001560089.1 CDS Cphy_2993 NC_010001.1 3654197 3654415 R KEGG: lsl:LSL_1861 phage-related DNA binding protein; phage-related DNA binding protein complement(3654197..3654415) Clostridium phytofermentans ISDg 5744055 YP_001560090.1 CDS Cphy_2994 NC_010001.1 3654603 3654932 D PFAM: helix-turn-helix domain protein; KEGG: bce:BC3704 LexA repressor; XRE family transcriptional regulator 3654603..3654932 Clostridium phytofermentans ISDg 5744056 YP_001560091.1 CDS Cphy_2995 NC_010001.1 3654965 3655618 D PFAM: protein of unknown function DUF955; hypothetical protein 3654965..3655618 Clostridium phytofermentans ISDg 5744057 YP_001560092.1 CDS Cphy_2996 NC_010001.1 3655705 3656382 D hypothetical protein 3655705..3656382 Clostridium phytofermentans ISDg 5744058 YP_001560093.1 CDS Cphy_2997 NC_010001.1 3656562 3657896 D PFAM: Resolvase domain; Recombinase; KEGG: cdf:CD2952 phage site-specific recombinase; resolvase domain-containing protein 3656562..3657896 Clostridium phytofermentans ISDg 5744059 YP_001560094.1 CDS Cphy_2998 NC_010001.1 3657958 3659730 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; KEGG: tte:TTE0030 Cation transport ATPases; P-type HAD superfamily ATPase 3657958..3659730 Clostridium phytofermentans ISDg 5744060 YP_001560095.1 CDS Cphy_2999 NC_010001.1 3660007 3660447 R PFAM: thioesterase superfamily protein; KEGG: smu:SMU.795 conserved hypothetical protein; probable esterase; thioesterase superfamily protein complement(3660007..3660447) Clostridium phytofermentans ISDg 5744061 YP_001560096.1 CDS Cphy_3000 NC_010001.1 3660492 3661094 R PFAM: conserved hypothetical protein; KEGG: lbu:LBUL_0756 hypothetical protein; hypothetical protein complement(3660492..3661094) Clostridium phytofermentans ISDg 5743326 YP_001560097.1 CDS Cphy_3001 NC_010001.1 3661586 3662899 R PFAM: enolase; KEGG: cth:Cthe_0143 phosphopyruvate hydratase; phosphopyruvate hydratase complement(3661586..3662899) Clostridium phytofermentans ISDg 5743327 YP_001560098.1 CDS Cphy_3002 NC_010001.1 3663333 3664799 R PFAM: protein of unknown function DUF1058; cell wall hydrolase SleB; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: cdf:CD3563 spore cortex-lytic enzyme; cell wall hydrolase SleB complement(3663333..3664799) Clostridium phytofermentans ISDg 5743328 YP_001560099.1 CDS Cphy_3003 NC_010001.1 3664994 3665893 R PFAM: GCN5-related N-acetyltransferase; KEGG: drm:Dred_2229 hypothetical protein; N-acetyltransferase GCN5 complement(3664994..3665893) Clostridium phytofermentans ISDg 5743329 YP_001560100.1 CDS Cphy_3004 NC_010001.1 3665936 3666829 R KEGG: dsy:DSY1282 hypothetical protein; hypothetical protein complement(3665936..3666829) Clostridium phytofermentans ISDg 5743330 YP_001560101.1 CDS Cphy_3005 NC_010001.1 3667133 3667765 R PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; KEGG: cpr:CPR_2131 CBS domain protein; hypothetical protein complement(3667133..3667765) Clostridium phytofermentans ISDg 5743331 YP_001560102.1 CDS Cphy_3006 NC_010001.1 3667934 3669322 D TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: cpe:CPE0690 argininosuccinate lyase; argininosuccinate lyase 3667934..3669322 Clostridium phytofermentans ISDg 5743332 YP_001560103.1 CDS Cphy_3007 NC_010001.1 3669721 3671307 R KEGG: bcz:BCZK4583 conserved hypothetical protein; possible permease; hypothetical protein complement(3669721..3671307) Clostridium phytofermentans ISDg 5743333 YP_001560104.1 CDS Cphy_3008 NC_010001.1 3671335 3672045 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:BCZK4584 ABC transporter, ATP-binding protein; ABC transporter complement(3671335..3672045) Clostridium phytofermentans ISDg 5743334 YP_001560105.1 CDS Cphy_3009 NC_010001.1 3672467 3674620 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: cbe:Cbei_4674 glycoside hydrolase, family 3 domain protein; glycoside hydrolase family 3 complement(3672467..3674620) Clostridium phytofermentans ISDg 5743335 YP_001560106.1 CDS Cphy_3010 NC_010001.1 3674634 3675599 R PFAM: glycoside hydrolase family 10; KEGG: csc:Csac_2408 endo-1,4-beta-xylanase; endo-1,4-beta-xylanase complement(3674634..3675599) Clostridium phytofermentans ISDg 5743336 YP_001560107.1 CDS Cphy_3011 NC_010001.1 3676460 3678076 D PFAM: glycoside hydrolase family 43; KEGG: oih:OB2087 arabinofuranosidase; alpha-N-arabinofuranosidase 3676460..3678076 Clostridium phytofermentans ISDg 5743337 YP_001560108.1 CDS Cphy_3012 NC_010001.1 3678276 3679193 R PFAM: SufBD protein; KEGG: cdf:CD3607 hypothetical protein; SufBD protein complement(3678276..3679193) Clostridium phytofermentans ISDg 5743338 YP_001560109.1 CDS Cphy_3013 NC_010001.1 3679197 3679919 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD3608 ABC transporter, ATP-binding protein; ABC transporter complement(3679197..3679919) Clostridium phytofermentans ISDg 5743339 YP_001560110.1 CDS Cphy_3014 NC_010001.1 3679913 3680746 R KEGG: cac:CAC2917 acetyl esterase family enzyme; acetyl esterase complement(3679913..3680746) Clostridium phytofermentans ISDg 5743340 YP_001560111.1 CDS Cphy_3015 NC_010001.1 3681345 3682634 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cno:NT01CX_1509 integral membrane protein with CBS domains; hypothetical protein 3681345..3682634 Clostridium phytofermentans ISDg 5743341 YP_001560112.1 CDS Cphy_3016 NC_010001.1 3682757 3684088 R TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: cbf:CLI_1211 magnesium transporter; magnesium transporter complement(3682757..3684088) Clostridium phytofermentans ISDg 5743342 YP_001560113.1 CDS Cphy_3017 NC_010001.1 3684713 3686032 R PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dsy:DSY3438 hypothetical protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein complement(3684713..3686032) Clostridium phytofermentans ISDg 5743343 YP_001560114.1 CDS Cphy_3018 NC_010001.1 3686029 3686427 R PFAM: protein of unknown function DUF134; KEGG: csc:Csac_0224 protein of unknown function DUF134; hypothetical protein complement(3686029..3686427) Clostridium phytofermentans ISDg 5743344 YP_001560115.1 CDS Cphy_3019 NC_010001.1 3686677 3688038 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_1760 MATE efflux family protein; MATE efflux family protein complement(3686677..3688038) Clostridium phytofermentans ISDg 5743345 YP_001560116.1 CDS Cphy_3020 NC_010001.1 3688427 3689437 R KEGG: amt:Amet_3402 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase; Acetohydroxy acid isomeroreductase catalytic domain protein; ketol-acid reductoisomerase complement(3688427..3689437) Clostridium phytofermentans ISDg 5743346 YP_001560117.1 CDS Cphy_3021 NC_010001.1 3689517 3690017 R TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: cbe:Cbei_0212 acetolactate synthase, small subunit; acetolactate synthase small subunit complement(3689517..3690017) Clostridium phytofermentans ISDg 5743347 YP_001560118.1 CDS Cphy_3022 NC_010001.1 3690365 3692338 R PFAM: Heparinase II/III family protein; KEGG: cpr:CPR_0402 hypothetical protein; heparinase II/III family protein complement(3690365..3692338) Clostridium phytofermentans ISDg 5743348 YP_001560119.1 CDS Cphy_3023 NC_010001.1 3692529 3693836 R PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: cpe:CPE0324 probable glycosyl hydrolase; alpha-L-fucosidase complement(3692529..3693836) Clostridium phytofermentans ISDg 5743349 YP_001560120.1 CDS Cphy_3024 NC_010001.1 3693829 3694824 R PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: rsh:Rsph17029_1581 PHP C-terminal domain protein; phosphotransferase domain-containing protein complement(3693829..3694824) Clostridium phytofermentans ISDg 5743350 YP_001560121.1 CDS Cphy_3025 NC_010001.1 3694886 3696154 R PFAM: major facilitator superfamily MFS_1; KEGG: dps:DP1499 related to glycerol-3-phosphate transporter; major facilitator transporter complement(3694886..3696154) Clostridium phytofermentans ISDg 5743351 YP_001560122.1 CDS Cphy_3026 NC_010001.1 3696167 3697156 R PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: rsh:Rsph17029_1581 PHP C-terminal domain protein; phosphotransferase domain-containing protein complement(3696167..3697156) Clostridium phytofermentans ISDg 5743352 YP_001560123.1 CDS Cphy_3027 NC_010001.1 3697330 3698733 R PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PF00303 sugar ABC transporter, substrate-binding protein; extracellular solute-binding protein complement(3697330..3698733) Clostridium phytofermentans ISDg 5743353 YP_001560124.1 CDS Cphy_3028 NC_010001.1 3698864 3700276 R SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: bvu:BVU_0535 glycoside hydrolase family 29, candidate alpha-L-fucosidase; alpha-L-fucosidase complement(3698864..3700276) Clostridium phytofermentans ISDg 5743354 YP_001560125.1 CDS Cphy_3029 NC_010001.1 3700293 3701468 R PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 unsaturated glucuronyl hydrolase; glycosyl hydrolase family protein complement(3700293..3701468) Clostridium phytofermentans ISDg 5743355 YP_001560126.1 CDS Cphy_3030 NC_010001.1 3701523 3703697 R PFAM: conserved hypothetical protein; KEGG: cpf:CPF_0553 conserved hypothetical protein TIGR02336; hypothetical protein complement(3701523..3703697) Clostridium phytofermentans ISDg 5743356 YP_001560127.1 CDS Cphy_3031 NC_010001.1 3703869 3704702 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0318 sugar ABC transporter permease; binding-protein-dependent transport systems inner membrane component complement(3703869..3704702) Clostridium phytofermentans ISDg 5743357 YP_001560128.1 CDS Cphy_3032 NC_010001.1 3704716 3705639 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2233 ABC transporter, permease; binding-protein-dependent transport system inner membrane protein complement(3704716..3705639) Clostridium phytofermentans ISDg 5743358 YP_001560129.1 CDS Cphy_3033 NC_010001.1 3705830 3707731 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: bld:BLi00440 ABC transporter (permease); RBL00398; histidine kinase internal region complement(3705830..3707731) Clostridium phytofermentans ISDg 5743359 YP_001560130.1 CDS Cphy_3034 NC_010001.1 3707709 3709379 R PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_0684 response regulator receiver protein; two component AraC family transcriptional regulator complement(3707709..3709379) Clostridium phytofermentans ISDg 5743360 YP_001560131.1 CDS Cphy_3035 NC_010001.1 3709613 3711676 R KEGG: dsy:DSY3902 hypothetical protein; hypothetical protein complement(3709613..3711676) Clostridium phytofermentans ISDg 5743361 YP_001560132.1 CDS Cphy_3036 NC_010001.1 3712064 3713209 D PFAM: ApbE family lipoprotein; KEGG: cpf:CPF_2491 ApbE family protein; ApbE family lipoprotein 3712064..3713209 Clostridium phytofermentans ISDg 5743362 YP_001560133.1 CDS Cphy_3037 NC_010001.1 3713455 3714732 R PFAM: adenylosuccinate synthetase; KEGG: deb:DehaBAV1_0867 adenylosuccinate synthase; adenylosuccinate synthetase complement(3713455..3714732) Clostridium phytofermentans ISDg 5743363 YP_001560134.1 CDS Cphy_3038 NC_010001.1 3714959 3715405 R KEGG: mpt:Mpe_B0284 dUTP diphosphatase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut complement(3714959..3715405) Clostridium phytofermentans ISDg 5743364 YP_001560135.1 CDS Cphy_3039 NC_010001.1 3715605 3717011 R catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase complement(3715605..3717011) Clostridium phytofermentans ISDg 5743365 YP_001560136.1 CDS Cphy_3040 NC_010001.1 3717167 3718072 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cth:Cthe_0553 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3717167..3718072) Clostridium phytofermentans ISDg 5743366 YP_001560137.1 CDS Cphy_3041 NC_010001.1 3718159 3719544 R PFAM: Aldehyde Dehydrogenase_; KEGG: tde:TDE2512 aldehyde dehydrogenase (NADP) family protein; aldehyde dehydrogenase complement(3718159..3719544) Clostridium phytofermentans ISDg 5743367 YP_001560138.1 CDS Cphy_3042 NC_010001.1 3719789 3720238 D PFAM: protein of unknown function DUF188; KEGG: cac:CAC2825 uncharacterized conserved protein, YQXD B.subtilis ortholog; hypothetical protein 3719789..3720238 Clostridium phytofermentans ISDg 5743368 YP_001560139.1 CDS Cphy_3043 NC_010001.1 3720397 3721830 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(3720397..3721830) Clostridium phytofermentans ISDg 5743369 YP_001560140.1 CDS Cphy_3044 NC_010001.1 3721925 3723361 R TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: cth:Cthe_1249 amidophosphoribosyltransferase; amidophosphoribosyltransferase complement(3721925..3723361) Clostridium phytofermentans ISDg 5743370 YP_001560141.1 CDS Cphy_3045 NC_010001.1 3723470 3724177 R KEGG: csc:Csac_1999 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(3723470..3724177) Clostridium phytofermentans ISDg 5743371 YP_001560142.1 CDS Cphy_3046 NC_010001.1 3724548 3725189 R PFAM: protein of unknown function DUF1653; KEGG: cac:CAC1208 hypothetical protein; hypothetical protein complement(3724548..3725189) Clostridium phytofermentans ISDg 5743372 YP_001560143.1 CDS Cphy_3047 NC_010001.1 3725245 3726225 R hypothetical protein complement(3725245..3726225) Clostridium phytofermentans ISDg 5743373 YP_001560144.1 CDS Cphy_3048 NC_010001.1 3726218 3726751 R TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: llm:llmg_0282 anaerobic ribonucleoside-triphosphate reductase activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein complement(3726218..3726751) Clostridium phytofermentans ISDg 5743374 YP_001560145.1 CDS Cphy_3049 NC_010001.1 3727316 3728323 D PFAM: regulatory protein MerR; KEGG: dsy:DSY0175 hypothetical protein; MerR family transcriptional regulator 3727316..3728323 Clostridium phytofermentans ISDg 5743375 YP_001560146.1 CDS Cphy_3050 NC_010001.1 3728972 3731098 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(3728972..3731098) Clostridium phytofermentans ISDg 5743376 YP_001560147.1 CDS Cphy_3051 NC_010001.1 3731415 3732554 R TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: cbe:Cbei_4408 carboxynorspermidine decarboxylase; carboxynorspermidine decarboxylase complement(3731415..3732554) Clostridium phytofermentans ISDg 5743377 YP_001560148.1 CDS Cphy_3052 NC_010001.1 3732708 3733907 R PFAM: Saccharopine dehydrogenase; KEGG: bha:BH3957 hypothetical protein; saccharopine dehydrogenase complement(3732708..3733907) Clostridium phytofermentans ISDg 5743378 YP_001560149.1 CDS Cphy_3053 NC_010001.1 3733948 3734802 R TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: cpe:CPE0551 probable agmatinase; agmatinase complement(3733948..3734802) Clostridium phytofermentans ISDg 5743379 YP_001560150.1 CDS Cphy_3054 NC_010001.1 3734795 3735646 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(3734795..3735646) Clostridium phytofermentans ISDg 5743380 YP_001560151.1 CDS Cphy_3055 NC_010001.1 3735685 3737142 R PFAM: aminotransferase class V; Orn/Lys/Arg decarboxylase major region; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Orn/Lys/Arg decarboxylase domain protein; KEGG: dsy:DSY0236 hypothetical protein; Orn/Lys/Arg decarboxylase major region complement(3735685..3737142) Clostridium phytofermentans ISDg 5743381 YP_001560152.1 CDS Cphy_3056 NC_010001.1 3737655 3739844 R PFAM: glycoside hydrolase clan GH-D; KEGG: csc:Csac_1118 glycoside hydrolase, clan GH-D; glycoside hydrolase clan GH-D complement(3737655..3739844) Clostridium phytofermentans ISDg 5743382 YP_001560153.1 CDS Cphy_3057 NC_010001.1 3740098 3740526 R PFAM: CBS domain containing protein; KEGG: cdf:CD1356 regulatory protein; hypothetical protein complement(3740098..3740526) Clostridium phytofermentans ISDg 5743383 YP_001560154.1 CDS Cphy_3058 NC_010001.1 3740860 3741432 R hypothetical protein complement(3740860..3741432) Clostridium phytofermentans ISDg 5743384 YP_001560155.1 CDS Cphy_3059 NC_010001.1 3741851 3742309 R KEGG: amt:Amet_1218 domain of unknown function DUF1893; hypothetical protein complement(3741851..3742309) Clostridium phytofermentans ISDg 5743385 YP_001560156.1 CDS Cphy_3060 NC_010001.1 3742281 3742823 R KEGG: cbh:CLC_0541 hypothetical protein; hypothetical protein complement(3742281..3742823) Clostridium phytofermentans ISDg 5743386 YP_001560157.1 CDS Cphy_3061 NC_010001.1 3742826 3743941 R PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tte:TTE2520 predicted oxidoreductases of the aldo/keto reductase family; aldo/keto reductase complement(3742826..3743941) Clostridium phytofermentans ISDg 5743387 YP_001560158.1 CDS Cphy_3062 NC_010001.1 3744339 3745322 R PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: tte:TTE0576 subtilisin-like serine protease; peptidase S8/S53 subtilisin kexin sedolisin complement(3744339..3745322) Clostridium phytofermentans ISDg 5743388 YP_001560159.1 CDS Cphy_3063 NC_010001.1 3745713 3746846 D PFAM: peptidase M23B; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: cth:Cthe_0734 peptidase M23B; peptidase M23B 3745713..3746846 Clostridium phytofermentans ISDg 5743389 YP_001560160.1 CDS Cphy_3064 NC_010001.1 3747277 3747933 R hypothetical protein complement(3747277..3747933) Clostridium phytofermentans ISDg 5743390 YP_001560161.1 CDS Cphy_3065 NC_010001.1 3747961 3748224 R hypothetical protein complement(3747961..3748224) Clostridium phytofermentans ISDg 5743391 YP_001560162.1 CDS Cphy_3066 NC_010001.1 3748299 3750080 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpe:CPE0834 probable ABC transporter; ABC transporter related complement(3748299..3750080) Clostridium phytofermentans ISDg 5743392 YP_001560163.1 CDS Cphy_3067 NC_010001.1 3750058 3751908 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_0829 ABC transporter, ATP-binding protein; ABC transporter complement(3750058..3751908) Clostridium phytofermentans ISDg 5743393 YP_001560164.1 CDS Cphy_3068 NC_010001.1 3751920 3752993 R PFAM: regulatory protein ArsR; KEGG: bay:RBAM_027430 NrsE; ArsR family transcriptional regulator complement(3751920..3752993) Clostridium phytofermentans ISDg 5743394 YP_001560165.1 CDS Cphy_3069 NC_010001.1 3753565 3754962 R PFAM: polysaccharide deacetylase; KEGG: bsu:BG13184 similar to endo-1,4-beta-xylanase; polysaccharide deacetylase complement(3753565..3754962) Clostridium phytofermentans ISDg 5743395 YP_001560166.1 CDS Cphy_3070 NC_010001.1 3755455 3756117 R produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D complement(3755455..3756117) Clostridium phytofermentans ISDg 5743396 YP_001560167.1 CDS Cphy_3071 NC_010001.1 3756121 3757503 R produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B complement(3756121..3757503) Clostridium phytofermentans ISDg 5743397 YP_001560168.1 CDS Cphy_3072 NC_010001.1 3757503 3759272 R PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: cth:Cthe_2267 sodium-transporting two-sector ATPase; H+transporting two-sector ATPase alpha/beta subunit complement(3757503..3759272) Clostridium phytofermentans ISDg 5743398 YP_001560169.1 CDS Cphy_3073 NC_010001.1 3759273 3759608 R produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit F complement(3759273..3759608) Clostridium phytofermentans ISDg 5743399 YP_001560170.1 CDS Cphy_3074 NC_010001.1 3759601 3760581 R PFAM: H+transporting two-sector ATPase C (AC39) subunit; KEGG: cth:Cthe_2265 H+-transporting two-sector ATPase, C (AC39) subunit; H+transporting two-sector ATPase C (AC39) subunit complement(3759601..3760581) Clostridium phytofermentans ISDg 5743400 YP_001560171.1 CDS Cphy_3075 NC_010001.1 3760620 3761234 R PFAM: H+transporting two-sector ATPase E subunit; KEGG: cbf:CLI_2693 V-type ATPase, E subunit; H+transporting two-sector ATPase E subunit complement(3760620..3761234) Clostridium phytofermentans ISDg 5743401 YP_001560172.1 CDS Cphy_3076 NC_010001.1 3761254 3761766 R produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K complement(3761254..3761766) Clostridium phytofermentans ISDg 5743402 YP_001560173.1 CDS Cphy_3077 NC_010001.1 3761768 3763798 R PFAM: V-type ATPase 116 kDa subunit; KEGG: cth:Cthe_2262 V-type ATPase, 116 kDa subunit; H(+)-transporting two-sector ATPase complement(3761768..3763798) Clostridium phytofermentans ISDg 5743403 YP_001560174.1 CDS Cphy_3078 NC_010001.1 3763785 3764108 R hypothetical protein complement(3763785..3764108) Clostridium phytofermentans ISDg 5743164 YP_001560175.1 CDS Cphy_3079 NC_010001.1 3764287 3764658 R PFAM: protein of unknown function DUF1312; KEGG: aeh:Mlg_0352 hypothetical protein; hypothetical protein complement(3764287..3764658) Clostridium phytofermentans ISDg 5743165 YP_001560176.1 CDS Cphy_3080 NC_010001.1 3764873 3767515 R KEGG: bsu:BG12861 hypothetical protein; hypothetical protein complement(3764873..3767515) Clostridium phytofermentans ISDg 5743166 YP_001560177.1 CDS Cphy_3081 NC_010001.1 3767612 3771061 R PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: bfr:BF1741 beta-galactosidase; glycoside hydrolase family protein complement(3767612..3771061) Clostridium phytofermentans ISDg 5743167 YP_001560178.1 CDS Cphy_3082 NC_010001.1 3771562 3771993 R KEGG: mmq:MmarC5_0860 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein complement(3771562..3771993) Clostridium phytofermentans ISDg 5743168 YP_001560179.1 CDS Cphy_3083 NC_010001.1 3772009 3773280 R KEGG: mmz:MmarC7_1742 phenylacetate--CoA ligase; phenylacetate--CoA ligase complement(3772009..3773280) Clostridium phytofermentans ISDg 5743169 YP_001560180.1 CDS Cphy_3084 NC_010001.1 3773475 3774659 R TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: ckl:CKL_1659 predicted transposase; IS605 family transposase OrfB complement(3773475..3774659) Clostridium phytofermentans ISDg 5743170 YP_001560181.1 CDS Cphy_3086 NC_010001.1 3774879 3775286 R PFAM: amino acid-binding ACT domain protein; KEGG: drm:Dred_2883 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein complement(3774879..3775286) Clostridium phytofermentans ISDg 5743172 YP_001560182.1 CDS Cphy_3087 NC_010001.1 3775467 3776042 R PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: cth:Cthe_0614 pyruvate ferredoxin/flavodoxin oxidoreductase; indolepyruvate ferredoxin oxidoreductase complement(3775467..3776042) Clostridium phytofermentans ISDg 5743173 YP_001560183.1 CDS Cphy_3088 NC_010001.1 3776055 3777794 R TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: cth:Cthe_0613 thiamine pyrophosphate enzyme-like TPP-binding; indolepyruvate ferredoxin oxidoreductase subunit alpha complement(3776055..3777794) Clostridium phytofermentans ISDg 5743174 YP_001560184.1 CDS Cphy_3089 NC_010001.1 3778244 3778741 D PFAM: protein of unknown function DUF1113; KEGG: cdf:CD2159 hypothetical protein; hypothetical protein 3778244..3778741 Clostridium phytofermentans ISDg 5743175 YP_001560185.1 CDS Cphy_3090 NC_010001.1 3778886 3780412 D PFAM: Na+/solute symporter; KEGG: cth:Cthe_0612 SSS sodium solute transporter superfamily; Na+/solute symporter 3778886..3780412 Clostridium phytofermentans ISDg 5743176 YP_001560186.1 CDS Cphy_3091 NC_010001.1 3780587 3781900 R KEGG: mmq:MmarC5_1515 phenylacetate--CoA ligase; phenylacetate--CoA ligase complement(3780587..3781900) Clostridium phytofermentans ISDg 5743177 YP_001560187.1 CDS Cphy_3092 NC_010001.1 3782185 3782493 D KEGG: mmu:100039486 similar to keratin associated protein 6-2; keratin associated protein 6-2-like protein 3782185..3782493 Clostridium phytofermentans ISDg 5743178 YP_001560188.1 CDS Cphy_3093 NC_010001.1 3782954 3784057 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 3782954..3784057 Clostridium phytofermentans ISDg 5743179 YP_001560189.1 CDS Cphy_3094 NC_010001.1 3784185 3785759 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY3380 hypothetical protein; methyl-accepting chemotaxis sensory transducer complement(3784185..3785759) Clostridium phytofermentans ISDg 5743180 YP_001560190.1 CDS Cphy_3095 NC_010001.1 3786125 3786793 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cth:Cthe_3159 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(3786125..3786793) Clostridium phytofermentans ISDg 5743181 YP_001560191.1 CDS Cphy_3096 NC_010001.1 3786901 3788064 R PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: mtp:Mthe_0549 isocitrate dehydrogenase (NAD(+)); isocitrate dehydrogenase (NAD(+)) complement(3786901..3788064) Clostridium phytofermentans ISDg 5743182 YP_001560192.1 CDS Cphy_3097 NC_010001.1 3788120 3789532 R PFAM: pyruvate carboxyltransferase; KEGG: cth:Cthe_3157 pyruvate carboxyltransferase; pyruvate carboxyltransferase complement(3788120..3789532) Clostridium phytofermentans ISDg 5743183 YP_001560193.1 CDS Cphy_3098 NC_010001.1 3789949 3790422 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: amt:Amet_3812 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3789949..3790422 Clostridium phytofermentans ISDg 5743184 YP_001560194.1 CDS Cphy_3099 NC_010001.1 3790419 3790856 D KEGG: amt:Amet_3811 hypothetical protein; hypothetical protein 3790419..3790856 Clostridium phytofermentans ISDg 5743185 YP_001560195.1 CDS mgsA NC_010001.1 3790952 3791431 R catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase complement(3790952..3791431) Clostridium phytofermentans ISDg 5743186 YP_001560196.1 CDS Cphy_3101 NC_010001.1 3791765 3792694 D catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 3791765..3792694 Clostridium phytofermentans ISDg 5743187 YP_001560197.1 CDS Cphy_3102 NC_010001.1 3792846 3793784 R PFAM: glycosyl transferase family 2; KEGG: spd:SPD_0321 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(3792846..3793784) Clostridium phytofermentans ISDg 5743188 YP_001560198.1 CDS Cphy_3103 NC_010001.1 3793820 3794788 R PFAM: glycosyl transferase family 2; KEGG: spt:SPA0786 rhamnosyltransferase; glycosyl transferase family protein complement(3793820..3794788) Clostridium phytofermentans ISDg 5743189 YP_001560199.1 CDS Cphy_3104 NC_010001.1 3794965 3796023 R PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: spi:MGAS10750_Spy0250 oligopeptide transport ATP-binding protein OppF; ABC transporter complement(3794965..3796023) Clostridium phytofermentans ISDg 5743190 YP_001560200.1 CDS Cphy_3105 NC_010001.1 3796156 3797211 R KEGG: spi:MGAS10750_Spy0249 oligopeptide transport ATP-binding protein OppD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(3796156..3797211) Clostridium phytofermentans ISDg 5743191 YP_001560201.1 CDS Cphy_3106 NC_010001.1 3797424 3798398 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spi:MGAS10750_Spy0248 oligopeptide transport system permease OppC; binding-protein-dependent transport system inner membrane protein complement(3797424..3798398) Clostridium phytofermentans ISDg 5743192 YP_001560202.1 CDS Cphy_3107 NC_010001.1 3798399 3799337 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sae:NWMN_0856 oligopeptide transport system permease; binding-protein-dependent transport system inner membrane protein complement(3798399..3799337) Clostridium phytofermentans ISDg 5743193 YP_001560203.1 CDS Cphy_3108 NC_010001.1 3799364 3801211 R PFAM: extracellular solute-binding protein family 5; KEGG: spi:MGAS10750_Spy0246 oligopeptide-binding protein OppA; extracellular solute-binding protein complement(3799364..3801211) Clostridium phytofermentans ISDg 5743194 YP_001560204.1 CDS Cphy_3109 NC_010001.1 3802071 3803957 R PFAM: glycoside hydrolase family 25; KEGG: cbf:CLI_0852 glycosyl hydrolase, family 25; glycoside hydrolase family protein complement(3802071..3803957) Clostridium phytofermentans ISDg 5743195 YP_001560205.1 CDS Cphy_3110 NC_010001.1 3803988 3804848 R KEGG: swo:Swol_0934 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase complement(3803988..3804848) Clostridium phytofermentans ISDg 5743196 YP_001560206.1 CDS Cphy_3111 NC_010001.1 3804902 3806074 R PFAM: sodium/hydrogen exchanger; KEGG: cdf:CD0657 Na(+)/H(+) antiporter; sodium/hydrogen exchanger complement(3804902..3806074) Clostridium phytofermentans ISDg 5743197 YP_001560207.1 CDS Cphy_3112 NC_010001.1 3806563 3807795 D PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: cbe:Cbei_2232 serine dehydratase alpha chain; serine dehydratase alpha chain 3806563..3807795 Clostridium phytofermentans ISDg 5743198 YP_001560208.1 CDS Cphy_3113 NC_010001.1 3807982 3809040 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: cdf:CD2120 2-nitropropane dioxygenase; 2-nitropropane dioxygenase complement(3807982..3809040) Clostridium phytofermentans ISDg 5743199 YP_001560209.1 CDS Cphy_3114 NC_010001.1 3809245 3809895 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cbe:Cbei_3741 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase complement(3809245..3809895) Clostridium phytofermentans ISDg 5743200 YP_001560210.1 CDS Cphy_3115 NC_010001.1 3810153 3811973 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0028 ABC transporter, ATP-binding protein, HlyB family; ABC transporter complement(3810153..3811973) Clostridium phytofermentans ISDg 5743201 YP_001560211.1 CDS Cphy_3116 NC_010001.1 3811948 3813780 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpr:CPR_0817 antibiotic ABC transporter, ATP-binding protein; ABC transporter complement(3811948..3813780) Clostridium phytofermentans ISDg 5743202 YP_001560212.1 CDS Cphy_3117 NC_010001.1 3813933 3814961 R KEGG: tde:TDE0032 histidine kinase-related ATPase; signal transduction histidine kinase regulating citrate/malate metabolism complement(3813933..3814961) Clostridium phytofermentans ISDg 5743203 YP_001560213.1 CDS Cphy_3118 NC_010001.1 3814958 3815668 R PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: tde:TDE0033 DNA-binding response regulator; LytTR family two component transcriptional regulator complement(3814958..3815668) Clostridium phytofermentans ISDg 5743204 YP_001560214.1 CDS Cphy_3119 NC_010001.1 3816314 3816871 R KEGG: cbo:CBO2129 hypothetical protein; hypothetical protein complement(3816314..3816871) Clostridium phytofermentans ISDg 5743205 YP_001560215.1 CDS Cphy_3120 NC_010001.1 3817190 3818044 D KEGG: cbe:Cbei_2369 AAA ATPase; ATPase AAA 3817190..3818044 Clostridium phytofermentans ISDg 5743206 YP_001560216.1 CDS Cphy_3121 NC_010001.1 3818169 3818723 R PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_1771 rubrerythrin; rubrerythrin complement(3818169..3818723) Clostridium phytofermentans ISDg 5743207 YP_001560217.1 CDS Cphy_3122 NC_010001.1 3819042 3819887 R catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta complement(3819042..3819887) Clostridium phytofermentans ISDg 5743208 YP_001560218.1 CDS Cphy_3123 NC_010001.1 3819889 3821559 R PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cbe:Cbei_4042 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein complement(3819889..3821559) Clostridium phytofermentans ISDg 5743209 YP_001560219.1 CDS Cphy_3124 NC_010001.1 3822207 3822668 R PFAM: GCN5-related N-acetyltransferase; KEGG: ckl:CKL_3663 hypothetical protein; N-acetyltransferase GCN5 complement(3822207..3822668) Clostridium phytofermentans ISDg 5743210 YP_001560220.1 CDS Cphy_3125 NC_010001.1 3822835 3823311 R PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi02251 hypothetical protein; N-acetyltransferase GCN5 complement(3822835..3823311) Clostridium phytofermentans ISDg 5743211 YP_001560221.1 CDS Cphy_3127 NC_010001.1 3824057 3824749 R PFAM: metallophosphoesterase; KEGG: cbe:Cbei_0077 metallophosphoesterase; metallophosphoesterase complement(3824057..3824749) Clostridium phytofermentans ISDg 5743213 YP_001560222.1 CDS Cphy_3128 NC_010001.1 3825009 3826232 R PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: xla:100037187 hypothetical protein LOC100037187; UTP-glucose-1-phosphate uridylyltransferase complement(3825009..3826232) Clostridium phytofermentans ISDg 5743214 YP_001560223.1 CDS Cphy_3129 NC_010001.1 3826384 3826854 R KEGG: lla:L65707 unknown protein; hypothetical protein complement(3826384..3826854) Clostridium phytofermentans ISDg 5743215 YP_001560224.1 CDS Cphy_3130 NC_010001.1 3826900 3827478 R hypothetical protein complement(3826900..3827478) Clostridium phytofermentans ISDg 5743216 YP_001560225.1 CDS Cphy_3131 NC_010001.1 3827961 3828224 R hypothetical protein complement(3827961..3828224) Clostridium phytofermentans ISDg 5743217 YP_001560226.1 CDS Cphy_3132 NC_010001.1 3828481 3829326 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: dsy:DSY0076 hypothetical protein; AraC family transcriptional regulator complement(3828481..3829326) Clostridium phytofermentans ISDg 5743218 YP_001560227.1 CDS Cphy_3133 NC_010001.1 3829445 3829912 R PFAM: NUDIX hydrolase; KEGG: mac:MA1648 MutT/NUDIX family protein; NUDIX hydrolase complement(3829445..3829912) Clostridium phytofermentans ISDg 5743219 YP_001560228.1 CDS Cphy_3134 NC_010001.1 3829935 3830465 R PFAM: GCN5-related N-acetyltransferase; KEGG: cpf:CPF_1157 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3829935..3830465) Clostridium phytofermentans ISDg 5743220 YP_001560229.1 CDS Cphy_3135 NC_010001.1 3830555 3831055 R PFAM: GCN5-related N-acetyltransferase; KEGG: tth:TTC0848 acetyltransferase; N-acetyltransferase GCN5 complement(3830555..3831055) Clostridium phytofermentans ISDg 5743221 YP_001560230.1 CDS Cphy_3136 NC_010001.1 3831211 3831648 R PFAM: NUDIX hydrolase; KEGG: smu:SMU.561c hydrolase (MutT family); NUDIX hydrolase complement(3831211..3831648) Clostridium phytofermentans ISDg 5743222 YP_001560231.1 CDS Cphy_3137 NC_010001.1 3831670 3832056 R hypothetical protein complement(3831670..3832056) Clostridium phytofermentans ISDg 5743223 YP_001560232.1 CDS Cphy_3138 NC_010001.1 3832542 3833387 R PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: cdf:CD1883 AraC-family transcriptional regulator; AraC family transcriptional regulator complement(3832542..3833387) Clostridium phytofermentans ISDg 5743224 YP_001560233.1 CDS Cphy_3139 NC_010001.1 3833475 3834014 R hypothetical protein complement(3833475..3834014) Clostridium phytofermentans ISDg 5743225 YP_001560234.1 CDS Cphy_3140 NC_010001.1 3834071 3834538 R KEGG: cpf:CPF_0144 hypothetical protein; hypothetical protein complement(3834071..3834538) Clostridium phytofermentans ISDg 5743226 YP_001560235.1 CDS Cphy_3141 NC_010001.1 3834722 3835270 R KEGG: bth:BT_2346 iron-sulfur cluster-binding protein; (Fe-S)-binding protein complement(3834722..3835270) Clostridium phytofermentans ISDg 5743227 YP_001560236.1 CDS Cphy_3142 NC_010001.1 3835337 3836242 R PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: cbh:CLC_0768 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3835337..3836242) Clostridium phytofermentans ISDg 5743228 YP_001560237.1 CDS Cphy_3143 NC_010001.1 3837075 3838022 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(3837075..3838022) Clostridium phytofermentans ISDg 5743229 YP_001560238.1 CDS Cphy_3144 NC_010001.1 3838619 3839500 D KEGG: ssv:SSU98_1061 hypothetical protein; hypothetical protein 3838619..3839500 Clostridium phytofermentans ISDg 5743230 YP_001560239.1 CDS Cphy_3145 NC_010001.1 3839603 3840919 D PFAM: integrase family protein; KEGG: tte:TTE2127 integrase; integrase family protein 3839603..3840919 Clostridium phytofermentans ISDg 5743231 YP_001560240.1 CDS Cphy_3146 NC_010001.1 3841155 3842027 R KEGG: mla:Mlab_1274 nitrogenase subunit NifH (ATPase)-like protein; hypothetical protein complement(3841155..3842027) Clostridium phytofermentans ISDg 5743232 YP_001560241.1 CDS Cphy_3147 NC_010001.1 3842078 3842389 R KEGG: spb:M28_Spy1740 translation initiation inhibitor; translation initiation inhibitor complement(3842078..3842389) Clostridium phytofermentans ISDg 5743233 YP_001560242.1 CDS Cphy_3148 NC_010001.1 3842841 3843788 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: cac:CAC3514 reverse transcriptase/maturase family protein; RNA-directed DNA polymerase complement(3842841..3843788) Clostridium phytofermentans ISDg 5743234 YP_001560243.1 CDS Cphy_3149 NC_010001.1 3844123 3844839 R PFAM: cyclic nucleotide-binding; KEGG: cth:Cthe_0034 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein complement(3844123..3844839) Clostridium phytofermentans ISDg 5743236 YP_001560244.1 CDS Cphy_3150 NC_010001.1 3845084 3845812 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cth:Cthe_0035 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 3845084..3845812 Clostridium phytofermentans ISDg 5743237 YP_001560245.1 CDS Cphy_3151 NC_010001.1 3846872 3847669 D KEGG: bce:BC2977 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 3846872..3847669 Clostridium phytofermentans ISDg 5743238 YP_001560246.1 CDS Cphy_3152 NC_010001.1 3847835 3848593 R PFAM: Methyltransferase type 11; KEGG: mma:MM_0449 SAM-dependent methyltransferase; methyltransferase type 11 complement(3847835..3848593) Clostridium phytofermentans ISDg 5743239 YP_001560247.1 CDS Cphy_3153 NC_010001.1 3848911 3849357 R PFAM: RbsD or FucU transport; KEGG: cpf:CPF_1050 fucose operon protein FucU; transport protein RbsD/FucU complement(3848911..3849357) Clostridium phytofermentans ISDg 5743240 YP_001560248.1 CDS Cphy_3154 NC_010001.1 3849506 3850975 R PFAM: carbohydrate kinase FGGY; KEGG: cpf:CPF_1049 L-fuculokinase; carbohydrate kinase FGGY complement(3849506..3850975) Clostridium phytofermentans ISDg 5743241 YP_001560249.1 CDS fucI NC_010001.1 3850979 3852772 R catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase complement(3850979..3852772) Clostridium phytofermentans ISDg 5743242 YP_001560250.1 CDS Cphy_3156 NC_010001.1 3853035 3853886 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: cpf:CPF_1047 transcriptional regulator, AraC family; AraC family transcriptional regulator 3853035..3853886 Clostridium phytofermentans ISDg 5743243 YP_001560251.1 CDS Cphy_3157 NC_010001.1 3854096 3854650 R hypothetical protein complement(3854096..3854650) Clostridium phytofermentans ISDg 5743244 YP_001560252.1 CDS Cphy_3158 NC_010001.1 3855356 3857410 R PFAM: glycosyl hydrolase 67 C-teriminal domain protein; Glycosyl hydrolase 67 middle domain protein; KEGG: bha:BH1061 alpha-glucuronidase; alpha-glucuronidase complement(3855356..3857410) Clostridium phytofermentans ISDg 5743245 YP_001560253.1 CDS Cphy_3159 NC_010001.1 3857841 3858731 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_4840 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 3857841..3858731 Clostridium phytofermentans ISDg 5743246 YP_001560254.1 CDS Cphy_3160 NC_010001.1 3858979 3862536 D PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: cth:Cthe_2197 carbohydrate binding family 6; glycoside hydrolase family protein 3858979..3862536 Clostridium phytofermentans ISDg 5743247 YP_001560255.1 CDS Cphy_3161 NC_010001.1 3863088 3863939 R TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: ckl:CKL_2513 hypothetical protein; degV family protein complement(3863088..3863939) Clostridium phytofermentans ISDg 5743248 YP_001560256.1 CDS Cphy_3162 NC_010001.1 3864223 3864546 R KEGG: cbe:Cbei_4073 regulatory protein, LuxR; regulatory protein LuxR complement(3864223..3864546) Clostridium phytofermentans ISDg 5743249 YP_001560257.1 CDS Cphy_3163 NC_010001.1 3864737 3865729 R KEGG: rxy:Rxyl_1168 peptidase M29, aminopeptidase II; leucyl aminopeptidase complement(3864737..3865729) Clostridium phytofermentans ISDg 5743250 YP_001560258.1 CDS Cphy_3164 NC_010001.1 3865992 3866324 D PFAM: transcriptional regulator PadR family protein; KEGG: ctc:CTC00619 regulatory protein (PadR family); PadR-like family transcriptional regulator 3865992..3866324 Clostridium phytofermentans ISDg 5743251 YP_001560259.1 CDS Cphy_3165 NC_010001.1 3866331 3866879 D KEGG: ctc:CTC00620 hypothetical protein; hypothetical protein 3866331..3866879 Clostridium phytofermentans ISDg 5743252 YP_001560260.1 CDS Cphy_3166 NC_010001.1 3867087 3867419 R PFAM: branched-chain amino acid transport; KEGG: bsu:BG11916 branched-chain amino acid transport protein; branched-chain amino acid transport complement(3867087..3867419) Clostridium phytofermentans ISDg 5743253 YP_001560261.1 CDS Cphy_3167 NC_010001.1 3867410 3868087 R PFAM: AzlC family protein; KEGG: bsu:BG11915 branched-chain amino acid transport protein; AzlC family protein complement(3867410..3868087) Clostridium phytofermentans ISDg 5743254 YP_001560262.1 CDS Cphy_3168 NC_010001.1 3868097 3868708 R PFAM: transferase hexapeptide repeat containing protein; KEGG: cbh:CLC_2103 O-acetyltransferase family protein; hexapaptide repeat-containing transferase complement(3868097..3868708) Clostridium phytofermentans ISDg 5743255 YP_001560263.1 CDS Cphy_3169 NC_010001.1 3868776 3869471 R KEGG: blo:BL1242 hypothetical protein; hypothetical protein complement(3868776..3869471) Clostridium phytofermentans ISDg 5743256 YP_001560264.1 CDS Cphy_3170 NC_010001.1 3869461 3870927 R KEGG: llm:llmg_2248 abortive phage resistance; abortive phage resistance complement(3869461..3870927) Clostridium phytofermentans ISDg 5743257 YP_001560265.1 CDS Cphy_3171 NC_010001.1 3870966 3872483 R TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: sfu:Sfum_0306 2-isopropylmalate synthase; 2-isopropylmalate synthase complement(3870966..3872483) Clostridium phytofermentans ISDg 5743258 YP_001560266.1 CDS Cphy_3172 NC_010001.1 3873050 3874426 R catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta complement(3873050..3874426) Clostridium phytofermentans ISDg 5743259 YP_001560267.1 CDS Cphy_3173 NC_010001.1 3874914 3876260 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_2056 MATE efflux family protein; MATE efflux family protein complement(3874914..3876260) Clostridium phytofermentans ISDg 5743260 YP_001560268.1 CDS Cphy_3174 NC_010001.1 3877669 3878511 D PFAM: transcription activator effector binding; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_2042 transcription activator, effector binding; AraC family transcriptional regulator 3877669..3878511 Clostridium phytofermentans ISDg 5743262 YP_001560269.1 CDS Cphy_3175 NC_010001.1 3878837 3879739 R PFAM: Integrase catalytic region; KEGG: cbe:Cbei_0719 integrase, catalytic region; integrase catalytic region complement(3878837..3879739) Clostridium phytofermentans ISDg 5743263 YP_001560270.1 CDS Cphy_3176 NC_010001.1 3879814 3880500 R PFAM: transposase IS3/IS911 family protein; KEGG: lga:LGAS_1507 transposase; transposase IS3/IS911 family protein complement(3879814..3880500) Clostridium phytofermentans ISDg 5743264 YP_001560271.1 CDS Cphy_3177 NC_010001.1 3880838 3881785 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: cth:Cthe_0568 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(3880838..3881785) Clostridium phytofermentans ISDg 5743265 YP_001560272.1 CDS Cphy_3178 NC_010001.1 3882397 3882762 D hypothetical protein 3882397..3882762 Clostridium phytofermentans ISDg 5743266 YP_001560273.1 CDS Cphy_3179 NC_010001.1 3882857 3883609 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bha:BH0355 hypothetical protein; methyltransferase type 11 3882857..3883609 Clostridium phytofermentans ISDg 5743267 YP_001560274.1 CDS Cphy_3180 NC_010001.1 3883666 3884091 D KEGG: dsy:DSY1735 hypothetical protein; hypothetical protein 3883666..3884091 Clostridium phytofermentans ISDg 5743268 YP_001560275.1 CDS Cphy_3181 NC_010001.1 3884183 3885061 D PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: dsy:DSY1233 hypothetical protein; AraC family transcriptional regulator 3884183..3885061 Clostridium phytofermentans ISDg 5743269 YP_001560276.1 CDS Cphy_3182 NC_010001.1 3885058 3885468 D PFAM: Domain of unknown function DUF1905; KEGG: dsy:DSY1232 hypothetical protein; hypothetical protein 3885058..3885468 Clostridium phytofermentans ISDg 5743270 YP_001560277.1 CDS Cphy_3183 NC_010001.1 3885446 3885646 D KEGG: dsy:DSY1232 hypothetical protein; hypothetical protein 3885446..3885646 Clostridium phytofermentans ISDg 5743271 YP_001560278.1 CDS Cphy_3185 NC_010001.1 3885973 3886284 D KEGG: bcz:pE33L466_0246 hypothetical protein; hypothetical protein 3885973..3886284 Clostridium phytofermentans ISDg 5743273 YP_001560279.1 CDS Cphy_3186 NC_010001.1 3886259 3886846 D KEGG: rca:Rcas_0978 hypothetical protein; hypothetical protein 3886259..3886846 Clostridium phytofermentans ISDg 5743274 YP_001560280.1 CDS Cphy_3187 NC_010001.1 3887285 3887860 D KEGG: cth:Cthe_0378 hypothetical protein; hypothetical protein 3887285..3887860 Clostridium phytofermentans ISDg 5743275 YP_001560281.1 CDS Cphy_3188 NC_010001.1 3888123 3888683 D hypothetical protein 3888123..3888683 Clostridium phytofermentans ISDg 5743276 YP_001560282.1 CDS Cphy_3189 NC_010001.1 3888680 3888856 D hypothetical protein 3888680..3888856 Clostridium phytofermentans ISDg 5743277 YP_001560283.1 CDS Cphy_3190 NC_010001.1 3888857 3889234 D hypothetical protein 3888857..3889234 Clostridium phytofermentans ISDg 5743278 YP_001560284.1 CDS Cphy_3191 NC_010001.1 3889238 3890254 D PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: btk:BT9727_3018 conserved hypothetical protein, possible microcin C7 self-immunity protein; peptidase U61 LD-carboxypeptidase A 3889238..3890254 Clostridium phytofermentans ISDg 5743279 YP_001560285.1 CDS Cphy_3192 NC_010001.1 3890403 3890927 D PFAM: GCN5-related N-acetyltransferase; KEGG: wsu:WS1543 conserved hypothetical protein-acetyltransferase, including N-acetylase of ribosomal proteins; N-acetyltransferase GCN5 3890403..3890927 Clostridium phytofermentans ISDg 5743280 YP_001560286.1 CDS Cphy_3193 NC_010001.1 3890943 3891785 D KEGG: blo:BL0186 possible esterase; esterase 3890943..3891785 Clostridium phytofermentans ISDg 5743281 YP_001560287.1 CDS Cphy_3194 NC_010001.1 3892065 3892574 D hypothetical protein 3892065..3892574 Clostridium phytofermentans ISDg 5743282 YP_001560288.1 CDS Cphy_3195 NC_010001.1 3892747 3893268 D KEGG: bfr:BF1721 hypothetical protein; hypothetical protein 3892747..3893268 Clostridium phytofermentans ISDg 5743283 YP_001560289.1 CDS Cphy_3196 NC_010001.1 3893327 3894181 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3893327..3894181 Clostridium phytofermentans ISDg 5743284 YP_001560290.1 CDS Cphy_3197 NC_010001.1 3894375 3895118 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mba:Mbar_A2327 methylase; methyltransferase type 11 3894375..3895118 Clostridium phytofermentans ISDg 5743285 YP_001560291.1 CDS Cphy_3198 NC_010001.1 3895264 3895749 R PFAM: TM2 domain containing protein?; KEGG: ddi:DDBDRAFT_0204471 hypothetical protein; TM2 domain-containing protein complement(3895264..3895749) Clostridium phytofermentans ISDg 5743286 YP_001560292.1 CDS Cphy_3199 NC_010001.1 3895840 3896226 R hypothetical protein complement(3895840..3896226) Clostridium phytofermentans ISDg 5741977 YP_001560293.1 CDS Cphy_3200 NC_010001.1 3896293 3897282 R PFAM: aminoglycoside phosphotransferase; KEGG: syn:sll1119 hypothetical protein; aminoglycoside phosphotransferase complement(3896293..3897282) Clostridium phytofermentans ISDg 5741978 YP_001560294.1 CDS Cphy_3201 NC_010001.1 3897624 3898055 R KEGG: ckl:CKL_4052 hypothetical protein; hypothetical protein complement(3897624..3898055) Clostridium phytofermentans ISDg 5741979 YP_001560295.1 CDS Cphy_3202 NC_010001.1 3898410 3900641 R PFAM: glycoside hydrolase family 5; cellulose-binding family II; KEGG: bha:BH0603 endo-beta-1,4-glucanase (celulase B); cellulase complement(3898410..3900641) Clostridium phytofermentans ISDg 5741980 YP_001560296.1 CDS Cphy_3203 NC_010001.1 3900878 3904963 R KEGG: ehi:82.t00025 viral A-type inclusion protein repeat, Pfam: Nha1_C DUF148 ERM Prefoldin_2 WXG100 Vicilin_N TBPIP Myosin_tail_1 Filament YscO Bacillus_HBL EzrA DUF948 Rab5-bind Laminin_I MpPF2 Vps51 MSG Spectrin LMP PROSITE: GLU_RICH LYS_RICH; hypothetical protein complement(3900878..3904963) Clostridium phytofermentans ISDg 5741981 YP_001560297.1 CDS Cphy_3204 NC_010001.1 3905211 3905993 R PFAM: GCN5-related N-acetyltransferase; KEGG: lca:LSEI_2784 predicted acetyltransferase; N-acetyltransferase GCN5 complement(3905211..3905993) Clostridium phytofermentans ISDg 5741982 YP_001560298.1 CDS Cphy_3205 NC_010001.1 3906062 3907021 R PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: tte:TTE1617 glycerol 3-phosphate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein complement(3906062..3907021) Clostridium phytofermentans ISDg 5741983 YP_001560299.1 CDS Cphy_3206 NC_010001.1 3907719 3909908 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: csc:Csac_2452 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3907719..3909908) Clostridium phytofermentans ISDg 5741984 YP_001560300.1 CDS Cphy_3207 NC_010001.1 3910130 3911275 R PFAM: glycoside hydrolase family 8; KEGG: bha:BH2105 xylanase Y; glycoside hydrolase family protein complement(3910130..3911275) Clostridium phytofermentans ISDg 5741985 YP_001560301.1 CDS Cphy_3208 NC_010001.1 3911468 3912373 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2113 ABC transporter (permease); binding-protein-dependent transport system inner membrane protein complement(3911468..3912373) Clostridium phytofermentans ISDg 5741986 YP_001560302.1 CDS Cphy_3209 NC_010001.1 3912465 3913424 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2112 transmembrane lipoprotein; binding-protein-dependent transport system inner membrane protein complement(3912465..3913424) Clostridium phytofermentans ISDg 5741987 YP_001560303.1 CDS Cphy_3210 NC_010001.1 3913601 3915310 R KEGG: bha:BH2111 multiple sugar transport system substrate-binding protein; multiple sugar transport system substrate-binding protein complement(3913601..3915310) Clostridium phytofermentans ISDg 5741988 YP_001560304.1 CDS Cphy_3211 NC_010001.1 3915499 3917145 R PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bha:BH2109 hypothetical protein; two component AraC family transcriptional regulator complement(3915499..3917145) Clostridium phytofermentans ISDg 5741989 YP_001560305.1 CDS Cphy_3212 NC_010001.1 3917186 3918976 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: bha:BH2110 hypothetical protein; histidine kinase internal region complement(3917186..3918976) Clostridium phytofermentans ISDg 5741990 YP_001560306.1 CDS Cphy_3213 NC_010001.1 3919325 3919876 D hypothetical protein 3919325..3919876 Clostridium phytofermentans ISDg 5741991 YP_001560307.1 CDS Cphy_3214 NC_010001.1 3920002 3920307 R KEGG: cbh:CLC_2720 transposase; hypothetical protein complement(3920002..3920307) Clostridium phytofermentans ISDg 5741992 YP_001560308.1 CDS Cphy_3215 NC_010001.1 3920328 3920966 R KEGG: cbe:Cbei_0719 integrase, catalytic region; integrase, catalytic region complement(3920328..3920966) Clostridium phytofermentans ISDg 5741993 YP_001560309.1 CDS Cphy_3216 NC_010001.1 3920978 3921454 R PFAM: transposase IS3/IS911 family protein; KEGG: lga:LGAS_1507 transposase; transposase IS3/IS911 family protein complement(3920978..3921454) Clostridium phytofermentans ISDg 5741994 YP_001560310.1 CDS Cphy_3217 NC_010001.1 3921799 3923274 R PFAM: glycoside hydrolase family 28; KEGG: fjo:Fjoh_3114 glycoside hydrolase, family 28; glycoside hydrolase family protein complement(3921799..3923274) Clostridium phytofermentans ISDg 5741995 YP_001560311.1 CDS Cphy_3218 NC_010001.1 3923565 3924722 D PFAM: Protein of unknown function DUF895, eukaryotic; major facilitator superfamily MFS_1; KEGG: ckl:CKL_0592 predicted transporter protein; major facilitator transporter 3923565..3924722 Clostridium phytofermentans ISDg 5741996 YP_001560312.1 CDS Cphy_3219 NC_010001.1 3924970 3925452 R PFAM: transcription activator effector binding; KEGG: cac:CAC0426 transcriptional regulator (HTH_ARAC-domain); transcription activator effector binding complement(3924970..3925452) Clostridium phytofermentans ISDg 5741997 YP_001560313.1 CDS Cphy_3220 NC_010001.1 3925509 3925700 R KEGG: cdf:CD1883 AraC-family transcriptional regulator; hypothetical protein complement(3925509..3925700) Clostridium phytofermentans ISDg 5741998 YP_001560314.1 CDS Cphy_3221 NC_010001.1 3926048 3926380 D PFAM: Domain of unknown function DUF1801; KEGG: lbl:LBL_1943 hypothetical protein; hypothetical protein 3926048..3926380 Clostridium phytofermentans ISDg 5741999 YP_001560315.1 CDS Cphy_3222 NC_010001.1 3926521 3927549 R PFAM: ribonucleotide reductase; KEGG: cno:NT01CX_2365 ribonucleoside-diphosphate reductase, beta subunit; ribonucleoside-diphosphate reductase complement(3926521..3927549) Clostridium phytofermentans ISDg 5742000 YP_001560316.1 CDS Cphy_3223 NC_010001.1 3927564 3929858 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(3927564..3929858) Clostridium phytofermentans ISDg 5742001 YP_001560317.1 CDS Cphy_3224 NC_010001.1 3930139 3930822 R hypothetical protein complement(3930139..3930822) Clostridium phytofermentans ISDg 5742002 YP_001560318.1 CDS Cphy_3225 NC_010001.1 3930812 3931246 R hypothetical protein complement(3930812..3931246) Clostridium phytofermentans ISDg 5742003 YP_001560319.1 CDS Cphy_3226 NC_010001.1 3931599 3932162 R PFAM: nitroreductase; KEGG: mma:MM_1584 NADPH-flavin oxidoreductase; nitroreductase complement(3931599..3932162) Clostridium phytofermentans ISDg 5742004 YP_001560320.1 CDS Cphy_3227 NC_010001.1 3932692 3933114 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cbf:CLI_0887 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(3932692..3933114) Clostridium phytofermentans ISDg 5742005 YP_001560321.1 CDS Cphy_3228 NC_010001.1 3933307 3934080 R PFAM: Abortive infection protein; KEGG: tde:TDE1871 hypothetical protein; abortive infection protein complement(3933307..3934080) Clostridium phytofermentans ISDg 5742006 YP_001560322.1 CDS Cphy_3229 NC_010001.1 3934169 3934561 R KEGG: cpe:CPE0748 hypothetical protein; hypothetical protein complement(3934169..3934561) Clostridium phytofermentans ISDg 5742007 YP_001560323.1 CDS Cphy_3230 NC_010001.1 3934575 3936731 R KEGG: ctc:CTC00494 internalin A-like protein/ S-layer protein; hypothetical protein complement(3934575..3936731) Clostridium phytofermentans ISDg 5742008 YP_001560324.1 CDS Cphy_3231 NC_010001.1 3936787 3937206 R PFAM: GCN5-related N-acetyltransferase; KEGG: cbh:CLC_1455 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3936787..3937206) Clostridium phytofermentans ISDg 5742009 YP_001560325.1 CDS Cphy_3232 NC_010001.1 3937375 3938262 R KEGG: amt:Amet_3811 hypothetical protein; hypothetical protein complement(3937375..3938262) Clostridium phytofermentans ISDg 5742010 YP_001560326.1 CDS Cphy_3233 NC_010001.1 3938758 3939561 R PFAM: GCN5-related N-acetyltransferase; KEGG: btk:BT9727_2822 zwittermicin A-resistance protein; N-acetyltransferase GCN5 complement(3938758..3939561) Clostridium phytofermentans ISDg 5742011 YP_001560327.1 CDS Cphy_3234 NC_010001.1 3939729 3940430 R PFAM: Creatininase; KEGG: syn:sll0596 hypothetical protein; creatininase complement(3939729..3940430) Clostridium phytofermentans ISDg 5742012 YP_001560328.1 CDS Cphy_3235 NC_010001.1 3940793 3941185 R PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: btk:BT9727_2277 hypothetical protein; 3-demethylubiquinone-9 3-methyltransferase complement(3940793..3941185) Clostridium phytofermentans ISDg 5742013 YP_001560329.1 CDS Cphy_3236 NC_010001.1 3941236 3941937 R KEGG: hne:HNE_2897 hypothetical protein; hypothetical protein complement(3941236..3941937) Clostridium phytofermentans ISDg 5742014 YP_001560330.1 CDS Cphy_3237 NC_010001.1 3942269 3942916 R KEGG: btk:BT9727_4626 hypothetical protein; hypothetical protein complement(3942269..3942916) Clostridium phytofermentans ISDg 5742015 YP_001560331.1 CDS Cphy_3238 NC_010001.1 3943138 3943506 D hypothetical protein 3943138..3943506 Clostridium phytofermentans ISDg 5742016 YP_001560332.1 CDS Cphy_3239 NC_010001.1 3943604 3945511 R PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: cpf:CPF_1103 glycosyl hydrolase, family 20; glycoside hydrolase family protein complement(3943604..3945511) Clostridium phytofermentans ISDg 5742017 YP_001560333.1 CDS Cphy_3240 NC_010001.1 3945691 3947259 R PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3316 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(3945691..3947259) Clostridium phytofermentans ISDg 5742018 YP_001560334.1 CDS Cphy_3241 NC_010001.1 3947325 3948227 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0557 sugar ABC transporter permease; binding-protein-dependent transport systems inner membrane component complement(3947325..3948227) Clostridium phytofermentans ISDg 5742019 YP_001560335.1 CDS Cphy_3242 NC_010001.1 3948227 3949159 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, multiple sugar transport system permease; binding-protein-dependent transport system inner membrane protein complement(3948227..3949159) Clostridium phytofermentans ISDg 5742020 YP_001560336.1 CDS Cphy_3243 NC_010001.1 3949162 3950508 R KEGG: tte:TTE2589 hypothetical protein; hypothetical protein complement(3949162..3950508) Clostridium phytofermentans ISDg 5742021 YP_001560337.1 CDS Cphy_3244 NC_010001.1 3950512 3951996 R KEGG: tte:TTE2593 hypothetical protein; hypothetical protein complement(3950512..3951996) Clostridium phytofermentans ISDg 5742022 YP_001560338.1 CDS Cphy_3245 NC_010001.1 3952054 3952740 R KEGG: tte:TTE2592 hypothetical protein; hypothetical protein complement(3952054..3952740) Clostridium phytofermentans ISDg 5742023 YP_001560339.1 CDS Cphy_3246 NC_010001.1 3952801 3953715 R PFAM: ROK family protein; KEGG: tte:TTE1926 transcriptional regulator; ROK family protein complement(3952801..3953715) Clostridium phytofermentans ISDg 5742024 YP_001560340.1 CDS Cphy_3247 NC_010001.1 3954250 3954681 D KEGG: sth:STH2880 hypothetical protein; hypothetical protein 3954250..3954681 Clostridium phytofermentans ISDg 5742025 YP_001560341.1 CDS Cphy_3248 NC_010001.1 3954969 3955469 R hypothetical protein complement(3954969..3955469) Clostridium phytofermentans ISDg 5742026 YP_001560342.1 CDS Cphy_3249 NC_010001.1 3955645 3956145 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_2241 cupin 2, conserved barrel domain protein; cupin complement(3955645..3956145) Clostridium phytofermentans ISDg 5742027 YP_001560343.1 CDS Cphy_3250 NC_010001.1 3956596 3957117 R PFAM: GCN5-related N-acetyltransferase; KEGG: mac:MA1158 acetyltransferase (GNAT) family protein; N-acetyltransferase GCN5 complement(3956596..3957117) Clostridium phytofermentans ISDg 5742028 YP_001560344.1 CDS Cphy_3251 NC_010001.1 3957191 3957550 R hypothetical protein complement(3957191..3957550) Clostridium phytofermentans ISDg 5742029 YP_001560345.1 CDS Cphy_3252 NC_010001.1 3958096 3958452 D hypothetical protein 3958096..3958452 Clostridium phytofermentans ISDg 5742030 YP_001560346.1 CDS Cphy_3253 NC_010001.1 3958646 3958930 R hypothetical protein complement(3958646..3958930) Clostridium phytofermentans ISDg 5742031 YP_001560347.1 CDS Cphy_3254 NC_010001.1 3959168 3959434 R hypothetical protein complement(3959168..3959434) Clostridium phytofermentans ISDg 5742032 YP_001560348.1 CDS Cphy_3255 NC_010001.1 3959707 3960486 R PFAM: nitroreductase; KEGG: mth:MTH933 hypothetical protein; nitroreductase complement(3959707..3960486) Clostridium phytofermentans ISDg 5742034 YP_001560349.1 CDS Cphy_3256 NC_010001.1 3960513 3961391 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: lmo:lmo0109 hypothetical protein; AraC family transcriptional regulator complement(3960513..3961391) Clostridium phytofermentans ISDg 5742035 YP_001560350.1 CDS Cphy_3257 NC_010001.1 3961410 3963032 R PFAM: protein of unknown function UPF0118; KEGG: cpr:CPR_0707 probable permease; hypothetical protein complement(3961410..3963032) Clostridium phytofermentans ISDg 5742036 YP_001560351.1 CDS Cphy_3258 NC_010001.1 3963044 3965569 R PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: cth:Cthe_0645 homocysteine S-methyltransferase; homocysteine S-methyltransferase complement(3963044..3965569) Clostridium phytofermentans ISDg 5742037 YP_001560352.1 CDS Cphy_3259 NC_010001.1 3965760 3966860 R PFAM: metallophosphoesterase; KEGG: bce:BC2070 serine/threonine protein phosphatase; metallophosphoesterase complement(3965760..3966860) Clostridium phytofermentans ISDg 5742038 YP_001560353.1 CDS Cphy_3260 NC_010001.1 3967371 3968063 D KEGG: cbe:Cbei_1494 hypothetical protein; hypothetical protein 3967371..3968063 Clostridium phytofermentans ISDg 5742039 YP_001560354.1 CDS Cphy_3261 NC_010001.1 3968083 3969093 D KEGG: cac:CAC2564 hypothetical protein; hypothetical protein 3968083..3969093 Clostridium phytofermentans ISDg 5742040 YP_001560355.1 CDS Cphy_3262 NC_010001.1 3969594 3970568 D PFAM: Collagen triple helix repeat; KEGG: bat:BAS1130 hypothetical protein; triple helix repeat-containing collagen 3969594..3970568 Clostridium phytofermentans ISDg 5742041 YP_001560356.1 CDS Cphy_3263 NC_010001.1 3970779 3971429 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pdi:BDI_3848 phosphatase, HAD family; HAD family hydrolase complement(3970779..3971429) Clostridium phytofermentans ISDg 5741542 YP_001560357.1 CDS Cphy_3264 NC_010001.1 3971582 3972370 D PFAM: Ig domain protein group 2 domain protein; KEGG: cac:CAC3086 protein containing cell adhesion domain; Ig domain-containing protein 3971582..3972370 Clostridium phytofermentans ISDg 5741543 YP_001560358.1 CDS Cphy_3265 NC_010001.1 3972440 3972670 D hypothetical protein 3972440..3972670 Clostridium phytofermentans ISDg 5741544 YP_001560359.1 CDS Cphy_3266 NC_010001.1 3972937 3973902 R PFAM: inner-membrane translocator; KEGG: dsy:DSY1168 hypothetical protein; inner-membrane translocator complement(3972937..3973902) Clostridium phytofermentans ISDg 5741545 YP_001560360.1 CDS Cphy_3267 NC_010001.1 3973905 3975296 R PFAM: inner-membrane translocator; KEGG: dsy:DSY1169 hypothetical protein; inner-membrane translocator complement(3973905..3975296) Clostridium phytofermentans ISDg 5741546 YP_001560361.1 CDS Cphy_3268 NC_010001.1 3975289 3976851 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1170 hypothetical protein; ABC transporter complement(3975289..3976851) Clostridium phytofermentans ISDg 5741547 YP_001560362.1 CDS Cphy_3269 NC_010001.1 3977083 3978252 R PFAM: basic membrane lipoprotein; KEGG: dsy:DSY1171 hypothetical protein; basic membrane lipoprotein complement(3977083..3978252) Clostridium phytofermentans ISDg 5741548 YP_001560363.1 CDS Cphy_3270 NC_010001.1 3978730 3978987 R hypothetical protein complement(3978730..3978987) Clostridium phytofermentans ISDg 5741549 YP_001560364.1 CDS Cphy_3271 NC_010001.1 3979006 3979680 R KEGG: pcu:pc1997 UDP-N-acetylglucosamine diphosphorylase; UDP-N-acetylglucosamine diphosphorylase complement(3979006..3979680) Clostridium phytofermentans ISDg 5741550 YP_001560365.1 CDS Cphy_3272 NC_010001.1 3979787 3981952 R KEGG: amt:Amet_1141 DNA topoisomerase, type IA, central domain protein; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase complement(3979787..3981952) Clostridium phytofermentans ISDg 5741551 YP_001560366.1 CDS Cphy_3273 NC_010001.1 3982438 3983076 D PFAM: protein of unknown function DUF1121; KEGG: csc:Csac_1051 protein of unknown function DUF1121; hypothetical protein 3982438..3983076 Clostridium phytofermentans ISDg 5741552 YP_001560367.1 CDS glyA NC_010001.1 3983247 3984485 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(3983247..3984485) Clostridium phytofermentans ISDg 5741553 YP_001560368.1 CDS Cphy_3275 NC_010001.1 3984716 3985594 R TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cpf:CPF_0030 DegV family protein; degV family protein complement(3984716..3985594) Clostridium phytofermentans ISDg 5741554 YP_001560369.1 CDS Cphy_3276 NC_010001.1 3985882 3987255 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_2056 MATE efflux family protein; MATE efflux family protein 3985882..3987255 Clostridium phytofermentans ISDg 5741555 YP_001560370.1 CDS Cphy_3277 NC_010001.1 3987515 3988447 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0765 Periplasmic sugar-binding proteins; periplasmic binding protein/LacI transcriptional regulator complement(3987515..3988447) Clostridium phytofermentans ISDg 5741556 YP_001560371.1 CDS Cphy_3278 NC_010001.1 3988513 3989517 R PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0163 ribose ABC transporter, permease; monosaccharide-transporting ATPase complement(3988513..3989517) Clostridium phytofermentans ISDg 5741557 YP_001560372.1 CDS Cphy_3279 NC_010001.1 3989542 3991059 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component; ABC transporter complement(3989542..3991059) Clostridium phytofermentans ISDg 5741558 YP_001560373.1 CDS Cphy_3280 NC_010001.1 3991185 3992636 R KEGG: cpr:CPR_1601 ribose transport ATP-binding protein RbsA; sugar ABC transporter ATPase-like protein complement(3991185..3992636) Clostridium phytofermentans ISDg 5741559 YP_001560374.1 CDS Cphy_3281 NC_010001.1 3992703 3993710 R PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: csc:Csac_2533 integral membrane sensor signal transduction histidine kinase; signal transduction histidine kinase, LytS complement(3992703..3993710) Clostridium phytofermentans ISDg 5741560 YP_001560375.1 CDS Cphy_3282 NC_010001.1 3993730 3995337 R PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_0124 response regulator receiver protein; two component AraC family transcriptional regulator complement(3993730..3995337) Clostridium phytofermentans ISDg 5741561 YP_001560376.1 CDS Cphy_3283 NC_010001.1 3995923 3997602 D KEGG: cth:Cthe_0760 hypothetical protein; hypothetical protein 3995923..3997602 Clostridium phytofermentans ISDg 5741562 YP_001560377.1 CDS Cphy_3284 NC_010001.1 3997934 3998641 D TIGRFAM: integral membrane protein TIGR01906; PFAM: Integral membrane protein 1906; KEGG: cbf:CLI_3471 integral membrane protein TIGR01906; hypothetical protein 3997934..3998641 Clostridium phytofermentans ISDg 5741563 YP_001560378.1 CDS Cphy_3285 NC_010001.1 3998753 4000441 R hypothetical protein complement(3998753..4000441) Clostridium phytofermentans ISDg 5741564 YP_001560379.1 CDS Cphy_3286 NC_010001.1 4001249 4002424 D PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 4001249..4002424 Clostridium phytofermentans ISDg 5741565 YP_001560380.1 CDS Cphy_3287 NC_010001.1 4002699 4004153 R KEGG: csc:Csac_1713 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase complement(4002699..4004153) Clostridium phytofermentans ISDg 5741566 YP_001560381.1 CDS Cphy_3288 NC_010001.1 4004684 4005193 R KEGG: csc:Csac_1712 hypothetical protein; hypothetical protein complement(4004684..4005193) Clostridium phytofermentans ISDg 5741567 YP_001560382.1 CDS Cphy_3289 NC_010001.1 4005483 4007108 R TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: cth:Cthe_2892 chaperonin GroEL; molecular chaperone GroEL complement(4005483..4007108) Clostridium phytofermentans ISDg 5741568 YP_001560383.1 CDS Cphy_3290 NC_010001.1 4007207 4007494 R PFAM: chaperonin Cpn10; KEGG: cno:NT01CX_0463 chaperonin, 10 kDa; chaperonin Cpn10 complement(4007207..4007494) Clostridium phytofermentans ISDg 5741569 YP_001560384.1 CDS Cphy_3291 NC_010001.1 4008223 4008573 D PFAM: VanZ family protein; KEGG: gtn:GTNG_0437 hypothetical protein; VanZ family protein 4008223..4008573 Clostridium phytofermentans ISDg 5741570 YP_001560385.1 CDS Cphy_3292 NC_010001.1 4008663 4009388 R KEGG: cth:Cthe_2069 hypothetical protein; hypothetical protein complement(4008663..4009388) Clostridium phytofermentans ISDg 5741571 YP_001560386.1 CDS Cphy_3293 NC_010001.1 4009525 4010355 R KEGG: cno:NT01CX_1368 hypothetical protein; hypothetical protein complement(4009525..4010355) Clostridium phytofermentans ISDg 5741572 YP_001560387.1 CDS Cphy_3294 NC_010001.1 4010368 4012065 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(4010368..4012065) Clostridium phytofermentans ISDg 5741573 YP_001560388.1 CDS Cphy_3295 NC_010001.1 4012384 4012950 R PFAM: cell wall hydrolase SleB; KEGG: bca:BCE_3795 cell wall hydrolase; cell wall hydrolase SleB complement(4012384..4012950) Clostridium phytofermentans ISDg 5741574 YP_001560389.1 CDS Cphy_3296 NC_010001.1 4013428 4014570 R KEGG: cth:Cthe_1219 hypothetical protein; hypothetical protein complement(4013428..4014570) Clostridium phytofermentans ISDg 5741575 YP_001560390.1 CDS Cphy_3297 NC_010001.1 4014600 4015616 R KEGG: bat:BAS4429 hypothetical protein; hypothetical protein complement(4014600..4015616) Clostridium phytofermentans ISDg 5741576 YP_001560391.1 CDS Cphy_3298 NC_010001.1 4015921 4017669 R TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: amt:Amet_1063 oligoendopeptidase, PepF/M3 family; pepF/M3 family oligoendopeptidase complement(4015921..4017669) Clostridium phytofermentans ISDg 5741577 YP_001560392.1 CDS Cphy_3299 NC_010001.1 4018266 4020059 R KEGG: dsy:DSY3139 fumarate reductase flavoprotein subunit; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; flavocytochrome c complement(4018266..4020059) Clostridium phytofermentans ISDg 5741578 YP_001560393.1 CDS Cphy_3300 NC_010001.1 4020194 4021588 R KEGG: cha:CHAB381_0623 capsule biosynthesis protein; poly-gamma-glutamate biosynthesis (capsule formation)-like protein complement(4020194..4021588) Clostridium phytofermentans ISDg 5741579 YP_001560394.1 CDS Cphy_3301 NC_010001.1 4021796 4022188 D PFAM: membrane-bound metal-dependent hydrolase; KEGG: bay:RBAM_030470 YvsG; membrane-bound metal-dependent hydrolase 4021796..4022188 Clostridium phytofermentans ISDg 5741580 YP_001560395.1 CDS Cphy_3302 NC_010001.1 4022326 4022676 R hypothetical protein complement(4022326..4022676) Clostridium phytofermentans ISDg 5741581 YP_001560396.1 CDS Cphy_3303 NC_010001.1 4023100 4023702 R PFAM: Phosphoglycerate mutase; KEGG: lac:LBA1065 phosphoglycerate mutase; phosphoglycerate mutase complement(4023100..4023702) Clostridium phytofermentans ISDg 5741582 YP_001560397.1 CDS Cphy_3304 NC_010001.1 4023831 4025027 R PFAM: regulatory protein MerR; MCP methyltransferase CheR-type; NodS family protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: lga:LGAS_1137 predicted transcriptional regulator; chemotaxis protein CheR complement(4023831..4025027) Clostridium phytofermentans ISDg 5741583 YP_001560398.1 CDS Cphy_3305 NC_010001.1 4025072 4026064 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cpf:CPF_0600 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(4025072..4026064) Clostridium phytofermentans ISDg 5741584 YP_001560399.1 CDS Cphy_3306 NC_010001.1 4026225 4026794 R PFAM: protein of unknown function DUF218; KEGG: cpf:CPF_1089 hypothetical protein; hypothetical protein complement(4026225..4026794) Clostridium phytofermentans ISDg 5741585 YP_001560400.1 CDS Cphy_3307 NC_010001.1 4026839 4027183 R hypothetical protein complement(4026839..4027183) Clostridium phytofermentans ISDg 5741586 YP_001560401.1 CDS Cphy_3308 NC_010001.1 4027540 4028118 R hypothetical protein complement(4027540..4028118) Clostridium phytofermentans ISDg 5741587 YP_001560402.1 CDS Cphy_3309 NC_010001.1 4028258 4028884 R PFAM: coagulation factor 5/8 type domain protein; KEGG: sma:SAV1723 mycodextranase; coagulation factor 5/8 type domain-containing protein complement(4028258..4028884) Clostridium phytofermentans ISDg 5741588 YP_001560403.1 CDS Cphy_3310 NC_010001.1 4028993 4030549 R KEGG: aor:AO090138000086 predicted protein Pfam: Glyco_hydro_49 Glyco_hydro_28 Zn_clus Fungal_trans BCNT PROSITE: ZN2_CY6_FUNGAL_1 ZN2_CY6_FUNGAL_2; hypothetical protein complement(4028993..4030549) Clostridium phytofermentans ISDg 5741589 YP_001560404.1 CDS Cphy_3311 NC_010001.1 4030600 4031262 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cac:CAC2614 beta-phosphoglucomutase; beta-phosphoglucomutase complement(4030600..4031262) Clostridium phytofermentans ISDg 5741590 YP_001560405.1 CDS Cphy_3312 NC_010001.1 4031558 4032568 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cbe:Cbei_1439 regulatory protein, LacI; LacI family transcriptional regulator 4031558..4032568 Clostridium phytofermentans ISDg 5741591 YP_001560406.1 CDS Cphy_3313 NC_010001.1 4032640 4034886 R PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: ana:all4989 hypothetical protein; Kojibiose phosphorylase complement(4032640..4034886) Clostridium phytofermentans ISDg 5741592 YP_001560407.1 CDS Cphy_3314 NC_010001.1 4035015 4037432 R PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; KEGG: cac:CAC2685 trehalose/maltose hydrolase (phosphorylase); Kojibiose phosphorylase complement(4035015..4037432) Clostridium phytofermentans ISDg 5741593 YP_001560408.1 CDS Cphy_3315 NC_010001.1 4037436 4038314 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO7011 membrane transport protein.; binding-protein-dependent transport systems inner membrane component complement(4037436..4038314) Clostridium phytofermentans ISDg 5741594 YP_001560409.1 CDS Cphy_3316 NC_010001.1 4038325 4039221 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1726 ABC transporter permease; binding-protein-dependent transport systems inner membrane component complement(4038325..4039221) Clostridium phytofermentans ISDg 5741595 YP_001560410.1 CDS Cphy_3317 NC_010001.1 4039364 4040842 R PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV1727 sugar-binding lipoprotein precursor; extracellular solute-binding protein complement(4039364..4040842) Clostridium phytofermentans ISDg 5741596 YP_001560411.1 CDS Cphy_3318 NC_010001.1 4041326 4041751 D SMART: regulatory protein MarR; KEGG: cpr:CPR_0509 transcriptional regulator, MarR family; MarR family transcriptional regulator 4041326..4041751 Clostridium phytofermentans ISDg 5741597 YP_001560412.1 CDS Cphy_3319 NC_010001.1 4041748 4043130 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ctc:CTC02405 Na+ driven multidrug efflux pump; MATE efflux family protein 4041748..4043130 Clostridium phytofermentans ISDg 5741598 YP_001560413.1 CDS Cphy_3321 NC_010001.1 4044302 4044943 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 complement(4044302..4044943) Clostridium phytofermentans ISDg 5741601 YP_001560414.1 CDS Cphy_3322 NC_010001.1 4045264 4046010 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cdf:CD0055 tRNA/rRNA methyltransferase; RNA methyltransferase complement(4045264..4046010) Clostridium phytofermentans ISDg 5741602 YP_001560415.1 CDS Cphy_3323 NC_010001.1 4046158 4046592 R PFAM: ribonuclease III; KEGG: cth:Cthe_2061 hypothetical protein; ribonuclease III complement(4046158..4046592) Clostridium phytofermentans ISDg 5741603 YP_001560416.1 CDS Cphy_3324 NC_010001.1 4046577 4047989 R TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; KEGG: cdf:CD0052 cysteinyl-tRNA synthetase; cysteinyl-tRNA synthetase complement(4046577..4047989) Clostridium phytofermentans ISDg 5741604 YP_001560417.1 CDS Cphy_3325 NC_010001.1 4048039 4048707 R TIGRFAM: serine O-acetyltransferase; KEGG: csc:Csac_0707 serine O-acetyltransferase; serine O-acetyltransferase complement(4048039..4048707) Clostridium phytofermentans ISDg 5741605 YP_001560418.1 CDS Cphy_3326 NC_010001.1 4049150 4049728 R KEGG: cpf:CPF_2616 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(4049150..4049728) Clostridium phytofermentans ISDg 5741606 YP_001560419.1 CDS Cphy_3327 NC_010001.1 4049796 4050236 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: tte:TTE0288 CheY-like receiver domains; AraC family transcriptional regulator complement(4049796..4050236) Clostridium phytofermentans ISDg 5741607 YP_001560420.1 CDS Cphy_3328 NC_010001.1 4050701 4050982 R hypothetical protein complement(4050701..4050982) Clostridium phytofermentans ISDg 5741608 YP_001560421.1 CDS Cphy_3329 NC_010001.1 4051097 4054015 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: bha:BH1908 glucan 1,4-beta-glucosidase; glycoside hydrolase family 3 complement(4051097..4054015) Clostridium phytofermentans ISDg 5741609 YP_001560422.1 CDS Cphy_3330 NC_010001.1 4054141 4054431 R KEGG: cdf:CD3324 hypothetical protein; hypothetical protein complement(4054141..4054431) Clostridium phytofermentans ISDg 5741610 YP_001560423.1 CDS Cphy_3331 NC_010001.1 4055168 4057156 R PFAM: protein of unknown function DUF214; KEGG: csc:Csac_0506 protein of unknown function DUF214; hypothetical protein complement(4055168..4057156) Clostridium phytofermentans ISDg 5741611 YP_001560424.1 CDS Cphy_3332 NC_010001.1 4057149 4057928 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_0507 ABC transporter related; ABC transporter complement(4057149..4057928) Clostridium phytofermentans ISDg 5741612 YP_001560425.1 CDS Cphy_3333 NC_010001.1 4058214 4059266 R PFAM: ATP-binding region ATPase domain protein; KEGG: csc:Csac_0508 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(4058214..4059266) Clostridium phytofermentans ISDg 5741613 YP_001560426.1 CDS Cphy_3334 NC_010001.1 4059285 4059956 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: csc:Csac_0509 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(4059285..4059956) Clostridium phytofermentans ISDg 5741614 YP_001560427.1 CDS Cphy_3335 NC_010001.1 4060078 4060809 R PFAM: aminoglycoside phosphotransferase; KEGG: cac:CAC2572 possible aminoglycoside phosphotransferase (protein kinase related), diverged; aminoglycoside phosphotransferase complement(4060078..4060809) Clostridium phytofermentans ISDg 5741615 YP_001560428.1 CDS Cphy_3336 NC_010001.1 4061107 4063470 R KEGG: aeh:Mlg_2687 regulator of chromosome condensation, RCC1; alpha-tubulin suppressor and related RCC1 domain-containing protein complement(4061107..4063470) Clostridium phytofermentans ISDg 5741616 YP_001560429.1 CDS Cphy_3337 NC_010001.1 4063470 4063964 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cbe:Cbei_1736 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(4063470..4063964) Clostridium phytofermentans ISDg 5741617 YP_001560430.1 CDS Cphy_3338 NC_010001.1 4064361 4065068 R PFAM: Phosphoglycerate mutase; KEGG: cme:CMA037C hypothetical protein Pfam: PGAM; phosphoglycerate mutase complement(4064361..4065068) Clostridium phytofermentans ISDg 5741618 YP_001560431.1 CDS Cphy_3339 NC_010001.1 4065325 4067127 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cdf:CD1666 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(4065325..4067127) Clostridium phytofermentans ISDg 5741619 YP_001560432.1 CDS Cphy_3340 NC_010001.1 4067140 4067880 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: vpa:VPA0110 phosphatase; HAD family hydrolase complement(4067140..4067880) Clostridium phytofermentans ISDg 5741620 YP_001560433.1 CDS Cphy_3341 NC_010001.1 4068393 4068926 R PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: lin:lin0464 hypothetical protein; helix-turn-helix type 11 domain-containing protein complement(4068393..4068926) Clostridium phytofermentans ISDg 5741621 YP_001560434.1 CDS Cphy_3342 NC_010001.1 4069021 4069635 D PFAM: peptidase S51 dipeptidase E; KEGG: abu:Abu_0883 peptidase, S51 family; peptidase S51 dipeptidase E 4069021..4069635 Clostridium phytofermentans ISDg 5741622 YP_001560435.1 CDS Cphy_3343 NC_010001.1 4070205 4071074 R TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: ctc:CTC02002 DegV protein; degV family protein complement(4070205..4071074) Clostridium phytofermentans ISDg 5741625 YP_001560436.1 CDS Cphy_3344 NC_010001.1 4071104 4071937 R PFAM: DegV family protein; KEGG: cno:NT01CX_0895 DegV family protein; DegV family protein complement(4071104..4071937) Clostridium phytofermentans ISDg 5741626 YP_001560437.1 CDS Cphy_3345 NC_010001.1 4072265 4073491 R PFAM: phosphofructokinase; KEGG: cth:Cthe_0347 phosphofructokinase; phosphofructokinase complement(4072265..4073491) Clostridium phytofermentans ISDg 5741627 YP_001560438.1 CDS Cphy_3346 NC_010001.1 4073838 4075199 R PFAM: Xanthine/uracil/vitamin C permease; KEGG: dsy:DSY2917 hypothetical protein; xanthine/uracil/vitamin C permease complement(4073838..4075199) Clostridium phytofermentans ISDg 5741628 YP_001560439.1 CDS Cphy_3347 NC_010001.1 4075722 4077407 R TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: cth:Cthe_2714 acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase large subunit complement(4075722..4077407) Clostridium phytofermentans ISDg 5741629 YP_001560440.1 CDS Cphy_3348 NC_010001.1 4077540 4079213 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(4077540..4079213) Clostridium phytofermentans ISDg 5741630 YP_001560441.1 CDS Cphy_3349 NC_010001.1 4079934 4081157 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(4079934..4081157) Clostridium phytofermentans ISDg 5741631 YP_001560442.1 CDS Cphy_3350 NC_010001.1 4081659 4085540 R KEGG: cac:CAC1655 bifunctional enzyme phosphoribosylformylglycinamidine (FGAM) synthase (synthetase domain/glutamine amidotransferase domain); TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; phosphoribosylformylglycinamidine synthase complement(4081659..4085540) Clostridium phytofermentans ISDg 5741632 YP_001560443.1 CDS Cphy_3351 NC_010001.1 4085878 4086840 D PFAM: glycosyl transferase family 4; KEGG: tde:TDE2249 phospho-N-acetylmuramoyl-pentapeptide-transferase; glycosyl transferase family protein 4085878..4086840 Clostridium phytofermentans ISDg 5741633 YP_001560444.1 CDS Cphy_3352 NC_010001.1 4086874 4087764 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cth:Cthe_0553 transcriptional regulator, LysR family; LysR family transcriptional regulator 4086874..4087764 Clostridium phytofermentans ISDg 5741634 YP_001560445.1 CDS Cphy_3353 NC_010001.1 4087902 4088837 R PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: cbe:Cbei_4345 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase complement(4087902..4088837) Clostridium phytofermentans ISDg 5741635 YP_001560446.1 CDS Cphy_3354 NC_010001.1 4088838 4089773 R PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: cbe:Cbei_4346 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase complement(4088838..4089773) Clostridium phytofermentans ISDg 5741636 YP_001560447.1 CDS leuD NC_010001.1 4090087 4090584 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase small subunit complement(4090087..4090584) Clostridium phytofermentans ISDg 5741637 YP_001560448.1 CDS Cphy_3356 NC_010001.1 4090732 4091997 R KEGG: ckl:CKL_2159 LeuC; TIGRFAM: homoaconitate hydratase family protein; 3-isopropylmalate dehydratase, large subunit; 3-isopropylmalate dehydratase; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase large subunit complement(4090732..4091997) Clostridium phytofermentans ISDg 5741638 YP_001560449.1 CDS Cphy_3357 NC_010001.1 4092010 4092360 R hypothetical protein complement(4092010..4092360) Clostridium phytofermentans ISDg 5741639 YP_001560450.1 CDS Cphy_3358 NC_010001.1 4092636 4093718 R KEGG: amt:Amet_3455 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase complement(4092636..4093718) Clostridium phytofermentans ISDg 5741640 YP_001560451.1 CDS Cphy_3359 NC_010001.1 4094025 4094168 D KEGG: bpu:BPUM_2481 possible glyoxalase; hypothetical protein 4094025..4094168 Clostridium phytofermentans ISDg 5741641 YP_001560452.1 CDS Cphy_3360 NC_010001.1 4094449 4095204 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tde:TDE1878 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase complement(4094449..4095204) Clostridium phytofermentans ISDg 5741642 YP_001560453.1 CDS Cphy_3361 NC_010001.1 4095186 4096109 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cbe:Cbei_1959 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4095186..4096109) Clostridium phytofermentans ISDg 5741643 YP_001560454.1 CDS Cphy_3362 NC_010001.1 4096233 4097285 R TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: oih:OB0896 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase complement(4096233..4097285) Clostridium phytofermentans ISDg 5741644 YP_001560455.1 CDS Cphy_3363 NC_010001.1 4097680 4098708 D hypothetical protein 4097680..4098708 Clostridium phytofermentans ISDg 5741645 YP_001560456.1 CDS Cphy_3364 NC_010001.1 4098867 4101254 R PFAM: transglutaminase domain protein; KEGG: cth:Cthe_1056 transglutaminase-like protein; transglutaminase domain-containing protein complement(4098867..4101254) Clostridium phytofermentans ISDg 5741646 YP_001560457.1 CDS Cphy_3365 NC_010001.1 4101518 4102687 R PFAM: protein of unknown function DUF58; KEGG: cth:Cthe_1055 protein of unknown function DUF58; hypothetical protein complement(4101518..4102687) Clostridium phytofermentans ISDg 5741647 YP_001560458.1 CDS Cphy_3366 NC_010001.1 4102705 4103655 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: tte:TTE2215 MoxR-like ATPases; ATPase complement(4102705..4103655) Clostridium phytofermentans ISDg 5741648 YP_001560459.1 CDS Cphy_3367 NC_010001.1 4103996 4106953 R Cellulase; PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: csc:Csac_1076 glycoside hydrolase, family 48; cellulose 1,4-beta-cellobiosidase complement(4103996..4106953) Clostridium phytofermentans ISDg 5741649 YP_001560460.1 CDS Cphy_3368 NC_010001.1 4107033 4109792 R PFAM: glycoside hydrolase family 48; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: csc:Csac_1076 glycoside hydrolase, family 48; cellulose 1,4-beta-cellobiosidase complement(4107033..4109792) Clostridium phytofermentans ISDg 5741650 YP_001560461.1 CDS Cphy_3369 NC_010001.1 4110435 4112468 R molecular chaperone; heat shock protein 90 complement(4110435..4112468) Clostridium phytofermentans ISDg 5741651 YP_001560462.1 CDS Cphy_3370 NC_010001.1 4112634 4113128 R hypothetical protein complement(4112634..4113128) Clostridium phytofermentans ISDg 5741652 YP_001560463.1 CDS Cphy_3371 NC_010001.1 4113223 4113993 R KEGG: bvu:BVU_3384 hypothetical protein; hypothetical protein complement(4113223..4113993) Clostridium phytofermentans ISDg 5741653 YP_001560464.1 CDS Cphy_3372 NC_010001.1 4114179 4115807 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BG13270 ABC transport system ATP-binding protein; ABC transporter complement(4114179..4115807) Clostridium phytofermentans ISDg 5741654 YP_001560465.1 CDS Cphy_3373 NC_010001.1 4116111 4117541 R KEGG: tva:TVAG_154640 surface antigen BspA-like Pfam: FNIP Pentapeptide_2 PROSITE: SER_RICH; hypothetical protein complement(4116111..4117541) Clostridium phytofermentans ISDg 5741655 YP_001560466.1 CDS Cphy_3374 NC_010001.1 4117863 4119971 R PFAM: glutamine synthetase catalytic region; KEGG: cth:Cthe_0863 glutamine synthetase, catalytic region; glutamine synthetase complement(4117863..4119971) Clostridium phytofermentans ISDg 5741656 YP_001560467.1 CDS Cphy_3375 NC_010001.1 4120333 4121241 R PFAM: MscS Mechanosensitive ion channel; KEGG: cps:CPS_4603 mechanosensitive ion channel family protein; MscS mechanosensitive ion channel complement(4120333..4121241) Clostridium phytofermentans ISDg 5741657 YP_001560468.1 CDS Cphy_3376 NC_010001.1 4121385 4122044 R PFAM: protein of unknown function DUF624; KEGG: tte:TTE1959 hypothetical protein; hypothetical protein complement(4121385..4122044) Clostridium phytofermentans ISDg 5741658 YP_001560469.1 CDS Cphy_3377 NC_010001.1 4122138 4123070 R KEGG: cdf:CD2491 mannose-6-phosphate isomerase; TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; mannose-6-phosphate isomerase complement(4122138..4123070) Clostridium phytofermentans ISDg 5741659 YP_001560470.1 CDS Cphy_3378 NC_010001.1 4123295 4123918 D PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: sak:SAK_1047 methyltransferase domain protein; methyltransferase small 4123295..4123918 Clostridium phytofermentans ISDg 5741660 YP_001560471.1 CDS Cphy_3379 NC_010001.1 4124135 4126075 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1825 ABC-type multidrug/protein/lipid transport system, ATPase; ABC transporter complement(4124135..4126075) Clostridium phytofermentans ISDg 5741661 YP_001560472.1 CDS Cphy_3380 NC_010001.1 4126110 4127831 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC2393 uncharacterized ABC transporter, ATPase component; ABC transporter complement(4126110..4127831) Clostridium phytofermentans ISDg 5741662 YP_001560473.1 CDS Cphy_3381 NC_010001.1 4128034 4128618 R TIGRFAM: xanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: cno:NT01CX_0402 xanthine phosphoribosyltransferase; xanthine phosphoribosyltransferase complement(4128034..4128618) Clostridium phytofermentans ISDg 5741663 YP_001560474.1 CDS Cphy_3382 NC_010001.1 4128852 4130012 R PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dsy:DSY4683 hypothetical protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit complement(4128852..4130012) Clostridium phytofermentans ISDg 5741664 YP_001560475.1 CDS Cphy_3383 NC_010001.1 4130031 4131194 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(4130031..4131194) Clostridium phytofermentans ISDg 5741665 YP_001560476.1 CDS Cphy_3384 NC_010001.1 4131547 4132506 R hypothetical protein complement(4131547..4132506) Clostridium phytofermentans ISDg 5741666 YP_001560477.1 CDS Cphy_3385 NC_010001.1 4132527 4132805 R hypothetical protein complement(4132527..4132805) Clostridium phytofermentans ISDg 5741667 YP_001560478.1 CDS Cphy_3386 NC_010001.1 4132757 4133266 R hypothetical protein complement(4132757..4133266) Clostridium phytofermentans ISDg 5743660 YP_001560479.1 CDS Cphy_3387 NC_010001.1 4133813 4134319 R PFAM: phosphoesterase PA-phosphatase related; KEGG: cbf:CLI_0422 PAP2 family protein; PA-phosphatase like phosphoesterase complement(4133813..4134319) Clostridium phytofermentans ISDg 5743661 YP_001560480.1 CDS Cphy_3388 NC_010001.1 4140411 4145495 R PFAM: glycoside hydrolase family 16; Carbohydrate-binding CenC domain protein; Ig domain protein group 2 domain protein; KEGG: cth:Cthe_2809 glycoside hydrolase, family 16; glucan endo-1,3-beta-D-glucosidase complement(4140411..4145495) Clostridium phytofermentans ISDg 5743665 YP_001560481.1 CDS Cphy_3389 NC_010001.1 4145767 4146588 R PFAM: Formamidopyrimidine-DNA glycolase, H2TH DNA binding; KEGG: pdi:BDI_2011 formamidopyrimidine-DNA glycosylase; formamidopyrimidine-DNA glycolase complement(4145767..4146588) Clostridium phytofermentans ISDg 5743666 YP_001560482.1 CDS Cphy_3390 NC_010001.1 4146977 4148716 R PFAM: FAD linked oxidase domain protein; KEGG: tde:TDE0138 alkyldihydroxyacetonephosphate synthase; FAD linked oxidase domain-containing protein complement(4146977..4148716) Clostridium phytofermentans ISDg 5743667 YP_001560483.1 CDS Cphy_3391 NC_010001.1 4148963 4150516 R PFAM: carbohydrate kinase FGGY; KEGG: fno:Fnod_0555 carbohydrate kinase FGGY; carbohydrate kinase FGGY complement(4148963..4150516) Clostridium phytofermentans ISDg 5743668 YP_001560484.1 CDS Cphy_3392 NC_010001.1 4150548 4150904 R PFAM: protein of unknown function DUF1667; KEGG: cac:CAC1324 uncharacterized predected metal-binding protein; hypothetical protein complement(4150548..4150904) Clostridium phytofermentans ISDg 5743669 YP_001560485.1 CDS Cphy_3393 NC_010001.1 4150901 4152223 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tde:TDE0135 pyridine nucleotide-disulphide oxidoreductase family protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(4150901..4152223) Clostridium phytofermentans ISDg 5743670 YP_001560486.1 CDS Cphy_3394 NC_010001.1 4152217 4153947 R PFAM: FAD dependent oxidoreductase; transport-associated; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: tde:TDE0134 oxidoreductase, FAD-dependent; FAD dependent oxidoreductase complement(4152217..4153947) Clostridium phytofermentans ISDg 5743671 YP_001560487.1 CDS Cphy_3395 NC_010001.1 4154158 4154739 D PFAM: regulatory protein TetR; KEGG: dsy:DSY1100 hypothetical protein; TetR family transcriptional regulator 4154158..4154739 Clostridium phytofermentans ISDg 5743672 YP_001560488.1 CDS Cphy_3396 NC_010001.1 4154932 4156332 R PFAM: glycoside hydrolase family 4; KEGG: csc:Csac_2748 glycoside hydrolase, family 4; glycoside hydrolase family protein complement(4154932..4156332) Clostridium phytofermentans ISDg 5743673 YP_001560489.1 CDS Cphy_3397 NC_010001.1 4156675 4157571 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: amt:Amet_0544 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 4156675..4157571 Clostridium phytofermentans ISDg 5743674 YP_001560490.1 CDS Cphy_3398 NC_010001.1 4157639 4159183 R PFAM: glycoside hydrolase family 43; KEGG: bha:BH3683 xylan beta-1,4-xylosidase; glycoside hydrolase family protein complement(4157639..4159183) Clostridium phytofermentans ISDg 5743675 YP_001560491.1 CDS Cphy_3399 NC_010001.1 4159229 4161427 R KEGG: sus:Acid_0267 hypothetical protein; hypothetical protein complement(4159229..4161427) Clostridium phytofermentans ISDg 5743676 YP_001560492.1 CDS Cphy_3400 NC_010001.1 4161559 4162410 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1119 multiple sugar transport system permease; binding-protein-dependent transport system inner membrane protein complement(4161559..4162410) Clostridium phytofermentans ISDg 5743677 YP_001560493.1 CDS Cphy_3401 NC_010001.1 4162423 4163340 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0386 lactose ABC transporter permease; binding-protein-dependent transport system inner membrane protein complement(4162423..4163340) Clostridium phytofermentans ISDg 5743678 YP_001560494.1 CDS Cphy_3402 NC_010001.1 4163470 4164825 R PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC0385 lactose ABC transporter substrate-binding protein; extracellular solute-binding protein complement(4163470..4164825) Clostridium phytofermentans ISDg 5743679 YP_001560495.1 CDS Cphy_3403 NC_010001.1 4165352 4166407 R hypothetical protein complement(4165352..4166407) Clostridium phytofermentans ISDg 5743680 YP_001560496.1 CDS Cphy_3404 NC_010001.1 4166683 4168008 R PFAM: glycoside hydrolase family 30; KEGG: stm:STM4426 activated by transcription factor SsrB, similar to Homo sapiens lysosomal glucosyl ceramidase; glycoside hydrolase family protein complement(4166683..4168008) Clostridium phytofermentans ISDg 5743681 YP_001560497.1 CDS Cphy_3405 NC_010001.1 4168051 4168812 R PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_2545 response regulator receiver protein; two component AraC family transcriptional regulator complement(4168051..4168812) Clostridium phytofermentans ISDg 5743682 YP_001560498.1 CDS Cphy_3406 NC_010001.1 4168817 4170628 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: csc:Csac_2517 integral membrane sensor signal transduction histidine kinase; histidine kinase internal region complement(4168817..4170628) Clostridium phytofermentans ISDg 5743683 YP_001560499.1 CDS Cphy_3407 NC_010001.1 4170711 4171556 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE2347 sugar permeases; binding-protein-dependent transport system inner membrane protein complement(4170711..4171556) Clostridium phytofermentans ISDg 5743684 YP_001560500.1 CDS Cphy_3408 NC_010001.1 4171564 4172445 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2515 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(4171564..4172445) Clostridium phytofermentans ISDg 5743685 YP_001560501.1 CDS Cphy_3409 NC_010001.1 4172661 4174016 R PFAM: extracellular solute-binding protein family 1; KEGG: tte:TTE2345 sugar-binding periplasmic proteins/domains; extracellular solute-binding protein complement(4172661..4174016) Clostridium phytofermentans ISDg 5743686 YP_001560502.1 CDS Cphy_3410 NC_010001.1 4174231 4174890 R KEGG: oih:OB1036 hypothetical protein; hypothetical protein complement(4174231..4174890) Clostridium phytofermentans ISDg 5743687 YP_001560503.1 CDS Cphy_3411 NC_010001.1 4187460 4188086 R KEGG: mma:MM_2848 hypothetical protein; hypothetical protein complement(4187460..4188086) Clostridium phytofermentans ISDg 5743694 YP_001560504.1 CDS Cphy_3412 NC_010001.1 4188117 4189334 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase complement(4188117..4189334) Clostridium phytofermentans ISDg 5743695 YP_001560505.1 CDS Cphy_3413 NC_010001.1 4189655 4190674 D TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase; KEGG: lac:LBA1687 L-asparaginase; L-asparaginase, type I 4189655..4190674 Clostridium phytofermentans ISDg 5743696 YP_001560506.1 CDS Cphy_3414 NC_010001.1 4191105 4192949 D TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: amt:Amet_4299 glucosamine--fructose-6-phosphate aminotransferase, isomerizing; glucosamine--fructose-6-phosphate aminotransferase 4191105..4192949 Clostridium phytofermentans ISDg 5743697 YP_001560507.1 CDS Cphy_3415 NC_010001.1 4193278 4194132 R KEGG: tva:TVAG_216880 PH domain containing protein Pfam: PH TolA Extensin_2 PROSITE: ARG_RICH GLN_RICH GLU_RICH PRO_RICH PH_DOMAIN; hypothetical protein complement(4193278..4194132) Clostridium phytofermentans ISDg 5743698 YP_001560508.1 CDS Cphy_3416 NC_010001.1 4194514 4195974 D PFAM: phospholipase D/Transphosphatidylase; KEGG: bpu:BPUM_1772 possible phospholipase D; phospholipase D/transphosphatidylase 4194514..4195974 Clostridium phytofermentans ISDg 5743699 YP_001560509.1 CDS Cphy_3417 NC_010001.1 4196207 4197085 R PFAM: Hsp33 protein; KEGG: tte:TTE1737 disulfide bond chaperones of the HSP33 family; Hsp33 protein complement(4196207..4197085) Clostridium phytofermentans ISDg 5743700 YP_001560510.1 CDS Cphy_3418 NC_010001.1 4197151 4197978 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cth:Cthe_1855 methyltransferase type 11; methyltransferase type 12 complement(4197151..4197978) Clostridium phytofermentans ISDg 5743701 YP_001560511.1 CDS Cphy_3419 NC_010001.1 4198367 4199833 R TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: amt:Amet_0591 xylulokinase; xylulokinase complement(4198367..4199833) Clostridium phytofermentans ISDg 5743702 YP_001560512.1 CDS Cphy_3420 NC_010001.1 4200152 4201297 D PFAM: ROK family protein; KEGG: cdf:CD3066 xylose repressor; ROK family protein 4200152..4201297 Clostridium phytofermentans ISDg 5743703 YP_001560513.1 CDS Cphy_3421 NC_010001.1 4201477 4202412 R PFAM: diacylglycerol kinase catalytic region; KEGG: oih:OB0767 hypothetical protein; diacylglycerol kinase catalytic subunit complement(4201477..4202412) Clostridium phytofermentans ISDg 5743704 YP_001560514.1 CDS Cphy_3422 NC_010001.1 4202430 4202645 R KEGG: cth:Cthe_1856 small acid-soluble spore protein beta; hypothetical protein complement(4202430..4202645) Clostridium phytofermentans ISDg 5743533 YP_001560515.1 CDS Cphy_3423 NC_010001.1 4202806 4206939 R TIGRFAM: recombination helicase AddA; PFAM: UvrD/REP helicase; KEGG: cpf:CPF_0025 ATP-dependent nuclease, subunit A; recombination helicase AddA complement(4202806..4206939) Clostridium phytofermentans ISDg 5743534 YP_001560516.1 CDS Cphy_3424 NC_010001.1 4206896 4210411 R TIGRFAM: ATP-dependent nuclease subunit B; KEGG: cno:NT01CX_1235 ATP-dependent deoxyribonuclease subunit B; ATP-dependent nuclease subunit B complement(4206896..4210411) Clostridium phytofermentans ISDg 5743535 YP_001560517.1 CDS Cphy_3425 NC_010001.1 4210545 4211021 D hypothetical protein 4210545..4211021 Clostridium phytofermentans ISDg 5743536 YP_001560518.1 CDS Cphy_3426 NC_010001.1 4211213 4213156 R TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; KEGG: cbe:Cbei_1044 NAD+ synthetase; NAD+ synthetase complement(4211213..4213156) Clostridium phytofermentans ISDg 5743537 YP_001560519.1 CDS Cphy_3427 NC_010001.1 4213553 4214494 D PFAM: Radical SAM domain protein; KEGG: cno:NT01CX_1001 uncharacterized Fe-S protein; radical SAM domain-containing protein 4213553..4214494 Clostridium phytofermentans ISDg 5743538 YP_001560520.1 CDS Cphy_3428 NC_010001.1 4214880 4216421 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dsy:DSY1197 hypothetical protein; integral membrane sensor signal transduction histidine kinase complement(4214880..4216421) Clostridium phytofermentans ISDg 5743540 YP_001560521.1 CDS Cphy_3429 NC_010001.1 4216418 4217119 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dsy:DSY1198 hypothetical protein; two component transcriptional regulator complement(4216418..4217119) Clostridium phytofermentans ISDg 5743541 YP_001560522.1 CDS Cphy_3430 NC_010001.1 4217431 4218156 D PFAM: Ig domain protein group 2 domain protein; KEGG: cac:CAC2107 contains cell adhesion domain; Ig domain-containing protein 4217431..4218156 Clostridium phytofermentans ISDg 5743542 YP_001560523.1 CDS Cphy_3431 NC_010001.1 4218411 4219820 D PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: cdf:CD2543 polysaccharide O-acetylase; membrane bound O-acyl transferase MBOAT family protein 4218411..4219820 Clostridium phytofermentans ISDg 5743543 YP_001560524.1 CDS Cphy_3432 NC_010001.1 4219925 4221250 D KEGG: cdf:CD2542 hypothetical protein; hypothetical protein 4219925..4221250 Clostridium phytofermentans ISDg 5743544 YP_001560525.1 CDS Cphy_3433 NC_010001.1 4221530 4222705 D PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 4221530..4222705 Clostridium phytofermentans ISDg 5743545 YP_001560526.1 CDS Cphy_3434 NC_010001.1 4222897 4226880 R PFAM: metallophosphoesterase; KEGG: sak:SAK_1901 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic precursor protein; metallophosphoesterase complement(4222897..4226880) Clostridium phytofermentans ISDg 5743546 YP_001560527.1 CDS Cphy_3435 NC_010001.1 4227378 4227752 R KEGG: cdf:CD2800 hypothetical protein; hypothetical protein complement(4227378..4227752) Clostridium phytofermentans ISDg 5743547 YP_001560528.1 CDS Cphy_3436 NC_010001.1 4227884 4228747 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cth:Cthe_2747 PHP-like protein; phosphotransferase domain-containing protein 4227884..4228747 Clostridium phytofermentans ISDg 5743548 YP_001560529.1 CDS Cphy_3437 NC_010001.1 4228976 4229308 R TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: cdf:CD2801 protein translocase subunit; preprotein translocase subunit YajC complement(4228976..4229308) Clostridium phytofermentans ISDg 5743549 YP_001560530.1 CDS tgt NC_010001.1 4229356 4230492 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(4229356..4230492) Clostridium phytofermentans ISDg 5743550 YP_001560531.1 CDS Cphy_3439 NC_010001.1 4230985 4231854 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; SEC-C motif domain protein; KEGG: dsy:DSY2339 hypothetical protein; methionine aminopeptidase complement(4230985..4231854) Clostridium phytofermentans ISDg 5743551 YP_001560532.1 CDS Cphy_3440 NC_010001.1 4232124 4232762 R TIGRFAM: V-type ATPase, D subunit; PFAM: H+transporting two-sector ATPase D subunit; KEGG: ctc:CTC02326 V-type sodium ATP synthase subunit D; V-type ATPase subunit D complement(4232124..4232762) Clostridium phytofermentans ISDg 5743552 YP_001560533.1 CDS Cphy_3441 NC_010001.1 4232767 4234152 R produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B complement(4232767..4234152) Clostridium phytofermentans ISDg 5743553 YP_001560534.1 CDS Cphy_3442 NC_010001.1 4234166 4235932 R produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A complement(4234166..4235932) Clostridium phytofermentans ISDg 5743554 YP_001560535.1 CDS Cphy_3443 NC_010001.1 4235925 4236512 R hypothetical protein complement(4235925..4236512) Clostridium phytofermentans ISDg 5743555 YP_001560536.1 CDS Cphy_3444 NC_010001.1 4236528 4236836 R PFAM: Vacuolar H+transporting two-sector ATPase F subunit; KEGG: mth:MTH956 ATP synthase, subunit F; vacuolar H+transporting two-sector ATPase F subunit complement(4236528..4236836) Clostridium phytofermentans ISDg 5743556 YP_001560537.1 CDS Cphy_3445 NC_010001.1 4236922 4237368 R PFAM: H+transporting two-sector ATPase C subunit; KEGG: ctc:CTC02330 V-type sodium ATP synthase subunit K; H+transporting two-sector ATPase subunit C complement(4236922..4237368) Clostridium phytofermentans ISDg 5743557 YP_001560538.1 CDS Cphy_3446 NC_010001.1 4237403 4239301 R PFAM: V-type ATPase 116 kDa subunit; KEGG: ctc:CTC02331 V-type sodium ATP synthase subunit I; V-type ATPase 116 kDa subunit complement(4237403..4239301) Clostridium phytofermentans ISDg 5743558 YP_001560539.1 CDS Cphy_3447 NC_010001.1 4239365 4240405 R PFAM: H+transporting two-sector ATPase C (AC39) subunit; KEGG: ctc:CTC02332 V-type sodium ATP synthase subunit C; H+transporting two-sector ATPase C (AC39) subunit complement(4239365..4240405) Clostridium phytofermentans ISDg 5743559 YP_001560540.1 CDS Cphy_3448 NC_010001.1 4240410 4240721 R hypothetical protein complement(4240410..4240721) Clostridium phytofermentans ISDg 5743560 YP_001560541.1 CDS Cphy_3449 NC_010001.1 4242103 4243116 R catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA complement(4242103..4243116) Clostridium phytofermentans ISDg 5743561 YP_001560542.1 CDS Cphy_3450 NC_010001.1 4243489 4245483 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: amt:Amet_1575 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4243489..4245483) Clostridium phytofermentans ISDg 5743562 YP_001560543.1 CDS Cphy_3451 NC_010001.1 4246002 4246562 D PFAM: integrase family protein; KEGG: cth:Cthe_2286 phage integrase; integrase family protein 4246002..4246562 Clostridium phytofermentans ISDg 5743563 YP_001560544.1 CDS Cphy_3452 NC_010001.1 4247037 4248374 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbf:CLI_2170 MATE efflux family protein; MATE efflux family protein complement(4247037..4248374) Clostridium phytofermentans ISDg 5743564 YP_001560545.1 CDS Cphy_3453 NC_010001.1 4249140 4250549 R PFAM: FAD dependent oxidoreductase; KEGG: cbe:Cbei_1910 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(4249140..4250549) Clostridium phytofermentans ISDg 5743566 YP_001560546.1 CDS Cphy_3454 NC_010001.1 4250828 4252570 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC1600 methyl-accepting chemotaxis-like protein (chemotaxis sensory transducer); methyl-accepting chemotaxis sensory transducer complement(4250828..4252570) Clostridium phytofermentans ISDg 5743567 YP_001560547.1 CDS Cphy_3457 NC_010001.1 4254705 4256462 R PFAM: Pyrrolo-quinoline quinone; KEGG: cth:Cthe_0739 hypothetical protein; Pyrrolo-quinoline quinone complement(4254705..4256462) Clostridium phytofermentans ISDg 5743569 YP_001560548.1 CDS Cphy_3458 NC_010001.1 4256803 4257216 R hypothetical protein complement(4256803..4257216) Clostridium phytofermentans ISDg 5743570 YP_001560549.1 CDS Cphy_3459 NC_010001.1 4257281 4258639 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(4257281..4258639) Clostridium phytofermentans ISDg 5743571 YP_001560550.1 CDS Cphy_3460 NC_010001.1 4258683 4259096 R hypothetical protein complement(4258683..4259096) Clostridium phytofermentans ISDg 5743572 YP_001560551.1 CDS Cphy_3461 NC_010001.1 4259366 4261840 R PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1789 ATPase AAA-2; ATPase complement(4259366..4261840) Clostridium phytofermentans ISDg 5743573 YP_001560552.1 CDS Cphy_3462 NC_010001.1 4261859 4262890 R PFAM: ATP:guanido phosphotransferase; KEGG: cth:Cthe_1790 ATP:guanido phosphotransferase; ATP:guanido phosphotransferase complement(4261859..4262890) Clostridium phytofermentans ISDg 5743574 YP_001560553.1 CDS Cphy_3463 NC_010001.1 4262906 4263427 R PFAM: UvrB/UvrC protein; KEGG: csc:Csac_2369 UvrB/UvrC protein; UvrB/UvrC protein complement(4262906..4263427) Clostridium phytofermentans ISDg 5743575 YP_001560554.1 CDS Cphy_3464 NC_010001.1 4263438 4263818 R PFAM: regulatory protein GntR HTH; KEGG: swo:Swol_1390 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(4263438..4263818) Clostridium phytofermentans ISDg 5743576 YP_001560555.1 CDS Cphy_3465 NC_010001.1 4264057 4265307 R KEGG: sth:STH2197 S-layer associated protein; hypothetical protein complement(4264057..4265307) Clostridium phytofermentans ISDg 5743577 YP_001560556.1 CDS Cphy_3466 NC_010001.1 4265471 4269316 R PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: cpf:CPF_1439 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain protein, possible enterotoxin; SH3 type 3 domain-containing protein complement(4265471..4269316) Clostridium phytofermentans ISDg 5743578 YP_001560557.1 CDS Cphy_3467 NC_010001.1 4269682 4270953 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(4269682..4270953) Clostridium phytofermentans ISDg 5743579 YP_001560558.1 CDS Cphy_3468 NC_010001.1 4271009 4271632 R TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: cth:Cthe_1247 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase complement(4271009..4271632) Clostridium phytofermentans ISDg 5743580 YP_001560559.1 CDS Cphy_3469 NC_010001.1 4271626 4272651 R KEGG: btl:BALH_0290 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; phosphoribosylformylglycinamidine cyclo-ligase complement(4271626..4272651) Clostridium phytofermentans ISDg 5743581 YP_001560560.1 CDS Cphy_3470 NC_010001.1 4273097 4275691 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: drm:Dred_2967 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase complement(4273097..4275691) Clostridium phytofermentans ISDg 5743582 YP_001560561.1 CDS Cphy_3471 NC_010001.1 4276305 4276811 R KEGG: tpt:Tpet_0474 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(4276305..4276811) Clostridium phytofermentans ISDg 5743583 YP_001560562.1 CDS Cphy_3472 NC_010001.1 4276911 4278992 R KEGG: tme:Tmel_0149 peptidase M29, aminopeptidase II; leucyl aminopeptidase complement(4276911..4278992) Clostridium phytofermentans ISDg 5743584 YP_001560563.1 CDS Cphy_3473 NC_010001.1 4279075 4279398 R hypothetical protein complement(4279075..4279398) Clostridium phytofermentans ISDg 5743585 YP_001560564.1 CDS Cphy_3474 NC_010001.1 4279440 4279886 R PFAM: VanZ family protein; KEGG: cac:CAC0829 uncharacterized conserved membrane protein, similar to MDR (VANZ) ORF of Enterococcus; VanZ family protein complement(4279440..4279886) Clostridium phytofermentans ISDg 5743586 YP_001560565.1 CDS Cphy_3475 NC_010001.1 4280248 4282776 R PFAM: Ig domain protein group 2 domain protein; KEGG: dsy:DSY0726 hypothetical protein; Ig domain-containing protein complement(4280248..4282776) Clostridium phytofermentans ISDg 5743587 YP_001560566.1 CDS Cphy_3476 NC_010001.1 4283044 4285482 R KEGG: cth:Cthe_0215 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta complement(4283044..4285482) Clostridium phytofermentans ISDg 5743588 YP_001560567.1 CDS Cphy_3477 NC_010001.1 4285529 4286548 R TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: cbe:Cbei_1573 phenylalanyl-tRNA synthetase, alpha subunit; phenylalanyl-tRNA synthetase subunit alpha complement(4285529..4286548) Clostridium phytofermentans ISDg 5743589 YP_001560568.1 CDS Cphy_3478 NC_010001.1 4287167 4288036 D PFAM: ribonuclease BN; KEGG: cpr:CPR_0272 YihY family protein; ribonuclease BN 4287167..4288036 Clostridium phytofermentans ISDg 5743590 YP_001560569.1 CDS Cphy_3479 NC_010001.1 4288304 4290862 R TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: fnu:FN0806 SpoIID homolog; SpoIID/LytB domain-containing protein complement(4288304..4290862) Clostridium phytofermentans ISDg 5743591 YP_001560570.1 CDS Cphy_3480 NC_010001.1 4291292 4292287 R KEGG: mta:Moth_1919 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase complement(4291292..4292287) Clostridium phytofermentans ISDg 5743592 YP_001560571.1 CDS Cphy_3481 NC_010001.1 4292775 4293530 R PFAM: dihydrodipicolinate reductase; KEGG: cth:Cthe_0963 dihydrodipicolinate reductase; dihydrodipicolinate reductase complement(4292775..4293530) Clostridium phytofermentans ISDg 5743593 YP_001560572.1 CDS Cphy_3482 NC_010001.1 4293665 4294549 R KEGG: tte:TTE0832 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase complement(4293665..4294549) Clostridium phytofermentans ISDg 5743594 YP_001560573.1 CDS Cphy_3483 NC_010001.1 4295064 4295699 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(4295064..4295699) Clostridium phytofermentans ISDg 5743595 YP_001560574.1 CDS Cphy_3484 NC_010001.1 4296587 4298413 D TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: cth:Cthe_1007 GTP-binding protein TypA; GTP-binding protein TypA 4296587..4298413 Clostridium phytofermentans ISDg 5743596 YP_001560575.1 CDS Cphy_3485 NC_010001.1 4298475 4299581 R TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ctc:CTC00423 peptidase T; peptidase T-like protein complement(4298475..4299581) Clostridium phytofermentans ISDg 5743597 YP_001560576.1 CDS Cphy_3486 NC_010001.1 4299694 4300455 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: cth:Cthe_3110 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD binding protein complement(4299694..4300455) Clostridium phytofermentans ISDg 5743598 YP_001560577.1 CDS Cphy_3487 NC_010001.1 4300804 4301628 R KEGG: cpr:CPR_0353 prophage ps3 protein 01; hypothetical protein complement(4300804..4301628) Clostridium phytofermentans ISDg 5743599 YP_001560578.1 CDS Cphy_3488 NC_010001.1 4301714 4302838 R TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118; KEGG: cth:Cthe_1013 protein of unknown function UPF0118; sporulation integral membrane protein YtvI complement(4301714..4302838) Clostridium phytofermentans ISDg 5743600 YP_001560579.1 CDS Cphy_3489 NC_010001.1 4303072 4303914 R PFAM: ABC-3 protein; KEGG: fnu:FN1810 manganese transport system membrane protein mntB; ABC-3 protein complement(4303072..4303914) Clostridium phytofermentans ISDg 5743601 YP_001560580.1 CDS Cphy_3490 NC_010001.1 4303959 4304774 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_0077 zinc ABC transporter, ATP-binding protein; ABC transporter complement(4303959..4304774) Clostridium phytofermentans ISDg 5743602 YP_001560581.1 CDS Cphy_3491 NC_010001.1 4304836 4305807 R PFAM: periplasmic solute binding protein; KEGG: cth:Cthe_0547 periplasmic solute binding protein; periplasmic solute binding protein complement(4304836..4305807) Clostridium phytofermentans ISDg 5743603 YP_001560582.1 CDS Cphy_3492 NC_010001.1 4305975 4306856 R PFAM: protein of unknown function DUF368; KEGG: oih:OB0592 hypothetical protein; hypothetical protein complement(4305975..4306856) Clostridium phytofermentans ISDg 5743604 YP_001560583.1 CDS Cphy_3493 NC_010001.1 4308034 4309122 R PFAM: acyltransferase 3; KEGG: sgl:SG0764 hypothetical protein; acyltransferase complement(4308034..4309122) Clostridium phytofermentans ISDg 5743605 YP_001560584.1 CDS Cphy_3494 NC_010001.1 4309695 4311578 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: lsl:LSL_0995 UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase; polysaccharide biosynthesis protein CapD complement(4309695..4311578) Clostridium phytofermentans ISDg 5743606 YP_001560585.1 CDS Cphy_3495 NC_010001.1 4311719 4313572 D KEGG: dsy:DSY3328 hypothetical protein; hypothetical protein 4311719..4313572 Clostridium phytofermentans ISDg 5743607 YP_001560586.1 CDS Cphy_3498 NC_010001.1 4315244 4316557 R PFAM: O-antigen polymerase; KEGG: fjo:Fjoh_2813 O-antigen polymerase; O-antigen polymerase complement(4315244..4316557) Clostridium phytofermentans ISDg 5743609 YP_001560587.1 CDS Cphy_3499 NC_010001.1 4316560 4317915 R PFAM: polysaccharide biosynthesis protein; KEGG: bth:BT_0390 O-antigen export protein; polysaccharide biosynthesis protein complement(4316560..4317915) Clostridium phytofermentans ISDg 5743610 YP_001560588.1 CDS Cphy_3500 NC_010001.1 4318014 4319033 R KEGG: ana:all4429 similar to hemolytic protein HlpA; hemolytic protein HlpA-like protein complement(4318014..4319033) Clostridium phytofermentans ISDg 5743611 YP_001560589.1 CDS Cphy_3501 NC_010001.1 4319109 4320365 R PFAM: glycosyl transferase group 1; KEGG: eba:ebA5884 hypothetical protein; group 1 glycosyl transferase complement(4319109..4320365) Clostridium phytofermentans ISDg 5743612 YP_001560590.1 CDS Cphy_3502 NC_010001.1 4320368 4321492 R PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: fps:FP1285 FnlC protein involved in UDP-L-FucpNAc biosynthesis (a nucleotide sugar precursor for antigen-O biosynthesis) probable UDP-2-acetamino-2,6-dideoxy-L-talose 2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(4320368..4321492) Clostridium phytofermentans ISDg 5743613 YP_001560591.1 CDS Cphy_3503 NC_010001.1 4321497 4322606 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: drm:Dred_3032 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(4321497..4322606) Clostridium phytofermentans ISDg 5743614 YP_001560592.1 CDS Cphy_3504 NC_010001.1 4322606 4323628 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: drm:Dred_3033 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD complement(4322606..4323628) Clostridium phytofermentans ISDg 5743615 YP_001560593.1 CDS Cphy_3505 NC_010001.1 4323651 4324862 R PFAM: glycosyl transferase group 1; KEGG: pdi:BDI_0575 glycosyltransferase family 4; group 1 glycosyl transferase complement(4323651..4324862) Clostridium phytofermentans ISDg 5743616 YP_001560594.1 CDS Cphy_3506 NC_010001.1 4324883 4325740 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: bha:BH3715 UDP-glucose 4-epimerase (galactowaldenases); NAD-dependent epimerase/dehydratase complement(4324883..4325740) Clostridium phytofermentans ISDg 5743617 YP_001560595.1 CDS Cphy_3507 NC_010001.1 4325737 4326372 R PFAM: sugar transferase; KEGG: amt:Amet_0201 sugar transferase; sugar transferase complement(4325737..4326372) Clostridium phytofermentans ISDg 5743618 YP_001560596.1 CDS Cphy_3508 NC_010001.1 4327062 4328393 R PFAM: integrase family protein; KEGG: mta:Moth_1796 phage integrase; integrase family protein complement(4327062..4328393) Clostridium phytofermentans ISDg 5743619 YP_001560597.1 CDS Cphy_3509 NC_010001.1 4328740 4331193 D PFAM: Ig domain protein group 2 domain protein; KEGG: bcy:Bcer98_0714 Ig domain protein group 2 domain protein; Ig domain-containing protein 4328740..4331193 Clostridium phytofermentans ISDg 5743620 YP_001560598.1 CDS Cphy_3510 NC_010001.1 4331261 4333696 R PFAM: Ig domain protein group 2 domain protein; KEGG: bat:BAS0841 S-layer protein SAP; Ig domain-containing protein complement(4331261..4333696) Clostridium phytofermentans ISDg 5743621 YP_001560599.1 CDS Cphy_3511 NC_010001.1 4334543 4336042 R KEGG: cac:CAC0999 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; threonine synthase complement(4334543..4336042) Clostridium phytofermentans ISDg 5743622 YP_001560600.1 CDS Cphy_3512 NC_010001.1 4336348 4337550 R PFAM: cell wall hydrolase SleB; KEGG: cno:NT01CX_1494 LysM-repeat proteins and domains; cell wall hydrolase SleB complement(4336348..4337550) Clostridium phytofermentans ISDg 5743623 YP_001560601.1 CDS Cphy_3513 NC_010001.1 4338234 4339049 D hypothetical protein 4338234..4339049 Clostridium phytofermentans ISDg 5743624 YP_001560602.1 CDS Cphy_3514 NC_010001.1 4339253 4340167 R KEGG: pth:PTH_0772 hypothetical membrane protein; hypothetical protein complement(4339253..4340167) Clostridium phytofermentans ISDg 5743625 YP_001560603.1 CDS Cphy_3515 NC_010001.1 4340182 4341123 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_1723 ABC transporter ATP-binding protein; ABC transporter complement(4340182..4341123) Clostridium phytofermentans ISDg 5743626 YP_001560604.1 CDS Cphy_3516 NC_010001.1 4341214 4343979 R KEGG: csc:Csac_0698 hypothetical protein; hypothetical protein complement(4341214..4343979) Clostridium phytofermentans ISDg 5743627 YP_001560605.1 CDS Cphy_3517 NC_010001.1 4343998 4345221 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: btk:BT9727_4582 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(4343998..4345221) Clostridium phytofermentans ISDg 5743628 YP_001560606.1 CDS Cphy_3518 NC_010001.1 4345282 4345986 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbf:CLI_0437 DNA-binding response regulator; two component transcriptional regulator complement(4345282..4345986) Clostridium phytofermentans ISDg 5743629 YP_001560607.1 CDS Cphy_3519 NC_010001.1 4346979 4348640 R PFAM: phosphoribulokinase/uridine kinase; KEGG: cth:Cthe_0332 phosphoribulokinase/uridine kinase; phosphoribulokinase/uridine kinase complement(4346979..4348640) Clostridium phytofermentans ISDg 5743631 YP_001560608.1 CDS Cphy_3520 NC_010001.1 4348806 4349561 R PFAM: protein of unknown function DUF633; KEGG: cac:CAC1302 predicted SAM-dependent methyltransferase; hypothetical protein complement(4348806..4349561) Clostridium phytofermentans ISDg 5743632 YP_001560609.1 CDS Cphy_3521 NC_010001.1 4349614 4350732 R TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: Bacterio-opsin activator HTH domain protein; sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: cth:Cthe_0895 RNA polymerase, sigma 38 subunit, RpoS; RpoD family RNA polymerase sigma factor complement(4349614..4350732) Clostridium phytofermentans ISDg 5743633 YP_001560610.1 CDS Cphy_3522 NC_010001.1 4350794 4352584 R KEGG: cth:Cthe_0896 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase complement(4350794..4352584) Clostridium phytofermentans ISDg 5743634 YP_001560611.1 CDS Cphy_3523 NC_010001.1 4352798 4353823 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(4352798..4353823) Clostridium phytofermentans ISDg 5743635 YP_001560612.1 CDS Cphy_3524 NC_010001.1 4354493 4356586 R TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: btl:BALH_4382 ferrous iron transport protein B; ferrous iron transport protein B complement(4354493..4356586) Clostridium phytofermentans ISDg 5743636 YP_001560613.1 CDS Cphy_3525 NC_010001.1 4356623 4356844 R PFAM: FeoA family protein; FeoA family protein complement(4356623..4356844) Clostridium phytofermentans ISDg 5743637 YP_001560614.1 CDS Cphy_3526 NC_010001.1 4357165 4357539 R KEGG: cbe:Cbei_3296 hypothetical protein; hypothetical protein complement(4357165..4357539) Clostridium phytofermentans ISDg 5743638 YP_001560615.1 CDS Cphy_3527 NC_010001.1 4357590 4357802 R KEGG: cbe:Cbei_3297 hypothetical protein; hypothetical protein complement(4357590..4357802) Clostridium phytofermentans ISDg 5743639 YP_001560616.1 CDS Cphy_3528 NC_010001.1 4358111 4358503 R PFAM: response regulator receiver; KEGG: cth:Cthe_0805 response regulator receiver protein; response regulator receiver protein complement(4358111..4358503) Clostridium phytofermentans ISDg 5743640 YP_001560617.1 CDS Cphy_3529 NC_010001.1 4358729 4359778 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(4358729..4359778) Clostridium phytofermentans ISDg 5743641 YP_001560618.1 CDS Cphy_3530 NC_010001.1 4359840 4361027 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(4359840..4361027) Clostridium phytofermentans ISDg 5743642 YP_001560619.1 CDS Cphy_3531 NC_010001.1 4361314 4361943 R KEGG: cbe:Cbei_4066 hypothetical protein; hypothetical protein complement(4361314..4361943) Clostridium phytofermentans ISDg 5743643 YP_001560620.1 CDS Cphy_3532 NC_010001.1 4361951 4362661 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pth:PTH_0073 ABC-type branched-chain amino acid transport systems, ATPase component; ABC transporter complement(4361951..4362661) Clostridium phytofermentans ISDg 5743644 YP_001560621.1 CDS Cphy_3533 NC_010001.1 4362683 4363441 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_0446 ATP binding protein of ABC transporter for branched-chain amino acids; ABC transporter complement(4362683..4363441) Clostridium phytofermentans ISDg 5743645 YP_001560622.1 CDS Cphy_3534 NC_010001.1 4363443 4364444 R PFAM: inner-membrane translocator; KEGG: drm:Dred_2238 inner-membrane translocator; inner-membrane translocator complement(4363443..4364444) Clostridium phytofermentans ISDg 5743646 YP_001560623.1 CDS Cphy_3535 NC_010001.1 4364454 4365329 R PFAM: inner-membrane translocator; KEGG: dsy:DSY5025 hypothetical protein; inner-membrane translocator complement(4364454..4365329) Clostridium phytofermentans ISDg 5743647 YP_001560624.1 CDS Cphy_3536 NC_010001.1 4365578 4366744 R PFAM: Extracellular ligand-binding receptor; KEGG: fnu:FN1432 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein; extracellular ligand-binding receptor complement(4365578..4366744) Clostridium phytofermentans ISDg 5743648 YP_001560625.1 CDS Cphy_3537 NC_010001.1 4367016 4367306 R hypothetical protein complement(4367016..4367306) Clostridium phytofermentans ISDg 5743649 YP_001560626.1 CDS Cphy_3538 NC_010001.1 4367375 4369090 R PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpe:CPE2561 probable Ser-type protease; peptidase S8/S53 subtilisin kexin sedolisin complement(4367375..4369090) Clostridium phytofermentans ISDg 5743650 YP_001560627.1 CDS Cphy_3539 NC_010001.1 4369225 4370235 R KEGG: cac:CAC2045 secreted protein containing domain of murein hydrolase (MltA homolog); hypothetical protein complement(4369225..4370235) Clostridium phytofermentans ISDg 5743651 YP_001560628.1 CDS clpX NC_010001.1 4370259 4371707 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(4370259..4371707) Clostridium phytofermentans ISDg 5743652 YP_001560629.1 CDS Cphy_3541 NC_010001.1 4371974 4372375 R KEGG: cbe:Cbei_4697 Zn-finger containing protein; Zn-finger containing protein complement(4371974..4372375) Clostridium phytofermentans ISDg 5743653 YP_001560630.1 CDS Cphy_3542 NC_010001.1 4372639 4374060 R KEGG: dsy:DSY3322 hypothetical protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; undecaprenyl-phosphate glucose phosphotransferase complement(4372639..4374060) Clostridium phytofermentans ISDg 5743654 YP_001560631.1 CDS Cphy_3543 NC_010001.1 4374543 4376276 D PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: chy:CHY_0655 serine protease Do; 2-alkenal reductase 4374543..4376276 Clostridium phytofermentans ISDg 5743655 YP_001560632.1 CDS Cphy_3544 NC_010001.1 4376510 4377697 R PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: cpe:CPE0482 probable glycero-phosphotransferase; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase complement(4376510..4377697) Clostridium phytofermentans ISDg 5743656 YP_001560633.1 CDS Cphy_3545 NC_010001.1 4377694 4378869 R KEGG: lca:LSEI_1134 glycosyltransferase; glycosyltransferase complement(4377694..4378869) Clostridium phytofermentans ISDg 5743657 YP_001560634.1 CDS Cphy_3546 NC_010001.1 4378896 4379639 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msi:Msm_1326 polysaccharide/polyol phosphate ABC transporter, ATPase component; ABC transporter complement(4378896..4379639) Clostridium phytofermentans ISDg 5743658 YP_001560635.1 CDS Cphy_3547 NC_010001.1 4379866 4380642 R PFAM: ABC-2 type transporter; KEGG: mst:Msp_0204 predicted ABC-type polysaccharide/polyol phosphate export system, permease; ABC-2 type transporter complement(4379866..4380642) Clostridium phytofermentans ISDg 5743659 YP_001560636.1 CDS Cphy_3548 NC_010001.1 4380908 4382578 R TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: cac:CAC0273 2-isopropylmalate synthase; 2-isopropylmalate synthase complement(4380908..4382578) Clostridium phytofermentans ISDg 5742952 YP_001560637.1 CDS Cphy_3549 NC_010001.1 4382754 4383056 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: ajs:Ajs_0296 phosphotransferase system, phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr complement(4382754..4383056) Clostridium phytofermentans ISDg 5742953 YP_001560638.1 CDS Cphy_3550 NC_010001.1 4383170 4384411 R KEGG: tte:TTE2207 hypothetical protein; hypothetical protein complement(4383170..4384411) Clostridium phytofermentans ISDg 5742954 YP_001560639.1 CDS Cphy_3551 NC_010001.1 4384392 4385273 R PFAM: protein of unknown function DUF147; KEGG: csc:Csac_1183 protein of unknown function DUF147; hypothetical protein complement(4384392..4385273) Clostridium phytofermentans ISDg 5742955 YP_001560640.1 CDS Cphy_3552 NC_010001.1 4385301 4386362 R hypothetical protein complement(4385301..4386362) Clostridium phytofermentans ISDg 5742956 YP_001560641.1 CDS Cphy_3553 NC_010001.1 4386359 4386790 R hypothetical protein complement(4386359..4386790) Clostridium phytofermentans ISDg 5742957 YP_001560642.1 CDS Cphy_3554 NC_010001.1 4387098 4387310 R KEGG: gka:GKP06 hypothetical protein; hypothetical protein complement(4387098..4387310) Clostridium phytofermentans ISDg 5742958 YP_001560643.1 CDS Cphy_3555 NC_010001.1 4387344 4388246 R PFAM: beta-lactamase domain protein; KEGG: ctc:CTC00821 ComE-like protein, metallo beta-lactamase superfamily hydrolase; beta-lactamase domain-containing protein complement(4387344..4388246) Clostridium phytofermentans ISDg 5742959 YP_001560644.1 CDS Cphy_3556 NC_010001.1 4389160 4390671 R TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: csc:Csac_0828 lysyl-tRNA synthetase; lysyl-tRNA synthetase complement(4389160..4390671) Clostridium phytofermentans ISDg 5742960 YP_001560645.1 CDS greA NC_010001.1 4390777 4391259 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(4390777..4391259) Clostridium phytofermentans ISDg 5742961 YP_001560646.1 CDS Cphy_3558 NC_010001.1 4391888 4395415 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cno:NT01CX_1854 pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 4391888..4395415 Clostridium phytofermentans ISDg 5742962 YP_001560647.1 CDS Cphy_3559 NC_010001.1 4395667 4396056 R hypothetical protein complement(4395667..4396056) Clostridium phytofermentans ISDg 5742963 YP_001560648.1 CDS Cphy_3560 NC_010001.1 4396078 4396374 R hypothetical protein complement(4396078..4396374) Clostridium phytofermentans ISDg 5742964 YP_001560649.1 CDS Cphy_3561 NC_010001.1 4396367 4397203 R KEGG: bha:BH3360 hypothetical protein; hypothetical protein complement(4396367..4397203) Clostridium phytofermentans ISDg 5742965 YP_001560650.1 CDS Cphy_3562 NC_010001.1 4397204 4397533 R PFAM: transcriptional regulator PadR family protein; KEGG: amt:Amet_1565 transcriptional regulator, PadR-like family; PadR-like family transcriptional regulator complement(4397204..4397533) Clostridium phytofermentans ISDg 5742966 YP_001560651.1 CDS Cphy_3563 NC_010001.1 4397796 4399868 R KEGG: bth:BT_0449 conserved hypothetical protein, S-layer related protein precursor; hypothetical protein complement(4397796..4399868) Clostridium phytofermentans ISDg 5742967 YP_001560652.1 CDS Cphy_3564 NC_010001.1 4399965 4400819 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: tte:TTE2419 transcriptional regulator; RpiR family transcriptional regulator complement(4399965..4400819) Clostridium phytofermentans ISDg 5742968 YP_001560653.1 CDS Cphy_3565 NC_010001.1 4400832 4401524 R PFAM: N-acetylmannosamine-6-phosphate epimerase; KEGG: fnu:FN1476 N-acetylmannosamine-6-phosphate 2-epimerase; N-acylglucosamine-6-phosphate 2-epimerase complement(4400832..4401524) Clostridium phytofermentans ISDg 5742969 YP_001560654.1 CDS Cphy_3566 NC_010001.1 4401543 4403048 R KEGG: tte:TTE2409 hypothetical protein; hypothetical protein complement(4401543..4403048) Clostridium phytofermentans ISDg 5742970 YP_001560655.1 CDS Cphy_3567 NC_010001.1 4403423 4404967 R KEGG: sco:SCO0628 secreted protein; secreted protein complement(4403423..4404967) Clostridium phytofermentans ISDg 5742971 YP_001560656.1 CDS Cphy_3568 NC_010001.1 4405037 4406263 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0557 sugar ABC transporter permease; binding-protein-dependent transport systems inner membrane component complement(4405037..4406263) Clostridium phytofermentans ISDg 5742972 YP_001560657.1 CDS Cphy_3569 NC_010001.1 4406276 4407250 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gtn:GTNG_1772 hypothetical protein; binding-protein-dependent transport system inner membrane protein complement(4406276..4407250) Clostridium phytofermentans ISDg 5742973 YP_001560658.1 CDS Cphy_3570 NC_010001.1 4407401 4409101 R KEGG: bcl:ABC1144 sugar ABC transporter substrate-binding protein; hypothetical protein complement(4407401..4409101) Clostridium phytofermentans ISDg 5742974 YP_001560659.1 CDS Cphy_3571 NC_010001.1 4409134 4411029 R PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: spd:SPD_1969 glycosyl hydrolase-related protein; glycoside hydrolase family protein complement(4409134..4411029) Clostridium phytofermentans ISDg 5742975 YP_001560660.1 CDS Cphy_3572 NC_010001.1 4411064 4412170 R KEGG: bth:BT_3593 hypothetical protein; hypothetical protein complement(4411064..4412170) Clostridium phytofermentans ISDg 5742976 YP_001560661.1 CDS Cphy_3573 NC_010001.1 4412453 4413352 D PFAM: ROK family protein; KEGG: fnu:FN1474 N-acetylmannosamine kinase; ROK family protein 4412453..4413352 Clostridium phytofermentans ISDg 5742977 YP_001560662.1 CDS Cphy_3574 NC_010001.1 4413453 4414838 R PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mba:Mbar_A3165 Fe-S oxidoreductase; radical SAM domain-containing protein complement(4413453..4414838) Clostridium phytofermentans ISDg 5742978 YP_001560663.1 CDS Cphy_3575 NC_010001.1 4414831 4415163 R hypothetical protein complement(4414831..4415163) Clostridium phytofermentans ISDg 5742979 YP_001560664.1 CDS Cphy_3576 NC_010001.1 4415324 4416421 R KEGG: lin:lin2245 similar to ABC transporter (membrane protein); hypothetical protein complement(4415324..4416421) Clostridium phytofermentans ISDg 5742980 YP_001560665.1 CDS Cphy_3577 NC_010001.1 4416402 4417319 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lmf:LMOf2365_2171 ABC transporter, ATP-binding protein; ABC transporter complement(4416402..4417319) Clostridium phytofermentans ISDg 5742981 YP_001560666.1 CDS Cphy_3578 NC_010001.1 4417348 4418718 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: bay:RBAM_037310 hypothetical protein; UBA/THIF-type NAD/FAD binding protein complement(4417348..4418718) Clostridium phytofermentans ISDg 5742982 YP_001560667.1 CDS Cphy_3579 NC_010001.1 4418725 4419777 R KEGG: abu:Abu_1032 peptidase, M50 family; hypothetical protein complement(4418725..4419777) Clostridium phytofermentans ISDg 5742983 YP_001560668.1 CDS Cphy_3580 NC_010001.1 4420612 4422468 D PFAM: protein of unknown function DUF181; KEGG: abu:Abu_1484 conserved hypothetical protein; hypothetical protein 4420612..4422468 Clostridium phytofermentans ISDg 5742984 YP_001560669.1 CDS Cphy_3581 NC_010001.1 4422750 4423883 R KEGG: smr:Smar_1521 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase complement(4422750..4423883) Clostridium phytofermentans ISDg 5742985 YP_001560670.1 CDS Cphy_3582 NC_010001.1 4423898 4424608 R TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: cdf:CD1011 glucosamine-6-phosphate deaminase; glucosamine-6-phosphate isomerase complement(4423898..4424608) Clostridium phytofermentans ISDg 5742986 YP_001560671.1 CDS Cphy_3583 NC_010001.1 4425122 4426300 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ctc:CTC02458 cobalt-zinc-cadmium resistance protein CzcD; cation diffusion facilitator family transporter complement(4425122..4426300) Clostridium phytofermentans ISDg 5742988 YP_001560672.1 CDS Cphy_3584 NC_010001.1 4426445 4427083 R PFAM: NADPH-dependent FMN reductase; KEGG: mbn:Mboo_0948 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(4426445..4427083) Clostridium phytofermentans ISDg 5742989 YP_001560673.1 CDS Cphy_3585 NC_010001.1 4427384 4428406 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: oih:OB2557 transcriptional regulator; LacI family transcriptional regulator complement(4427384..4428406) Clostridium phytofermentans ISDg 5742990 YP_001560674.1 CDS Cphy_3586 NC_010001.1 4428652 4430196 R PFAM: Ricin B lectin; glycosyl hydrolase 53 domain protein; KEGG: eca:ECA0852 exported plant proteoglycan hydrolase; arabinogalactan endo-1,4-beta-galactosidase complement(4428652..4430196) Clostridium phytofermentans ISDg 5742611 YP_001560675.1 CDS Cphy_3587 NC_010001.1 4430612 4432444 R hypothetical protein complement(4430612..4432444) Clostridium phytofermentans ISDg 5742612 YP_001560676.1 CDS Cphy_3588 NC_010001.1 4432750 4433562 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2724 lactose transport system permease; binding-protein-dependent transport systems inner membrane component complement(4432750..4433562) Clostridium phytofermentans ISDg 5742613 YP_001560677.1 CDS Cphy_3589 NC_010001.1 4433555 4434439 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2725 lactose transport system permease; binding-protein-dependent transport systems inner membrane component complement(4433555..4434439) Clostridium phytofermentans ISDg 5742614 YP_001560678.1 CDS Cphy_3590 NC_010001.1 4434607 4435923 R PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA0848 sugar ABC transporter, periplasmic binding protein; extracellular solute-binding protein complement(4434607..4435923) Clostridium phytofermentans ISDg 5742615 YP_001560679.1 CDS Cphy_3591 NC_010001.1 4436346 4438502 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: tte:TTE0448 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(4436346..4438502) Clostridium phytofermentans ISDg 5742616 YP_001560680.1 CDS Cphy_3592 NC_010001.1 4438735 4439025 D hypothetical protein 4438735..4439025 Clostridium phytofermentans ISDg 5742617 YP_001560681.1 CDS Cphy_3593 NC_010001.1 4439138 4440307 R KEGG: mgr:MGG_11654 predicted protein; hypothetical protein complement(4439138..4440307) Clostridium phytofermentans ISDg 5742618 YP_001560682.1 CDS Cphy_3594 NC_010001.1 4440309 4440818 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ckl:CKL_1000 RpoE; ECF subfamily RNA polymerase sigma-24 factor complement(4440309..4440818) Clostridium phytofermentans ISDg 5742619 YP_001560683.1 CDS Cphy_3595 NC_010001.1 4441038 4441982 R KEGG: cpf:CPF_1765 hypothetical protein; hypothetical protein complement(4441038..4441982) Clostridium phytofermentans ISDg 5742620 YP_001560684.1 CDS Cphy_3596 NC_010001.1 4442233 4443822 R TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; KEGG: cpr:CPR_0581 peptide chain release factor 3; peptide chain release factor 3 complement(4442233..4443822) Clostridium phytofermentans ISDg 5742621 YP_001560685.1 CDS Cphy_3597 NC_010001.1 4444093 4444788 R PFAM: ABC-2 type transporter; KEGG: lpl:lp_1334 ABC transporter, permease; ABC-2 type transporter complement(4444093..4444788) Clostridium phytofermentans ISDg 5742622 YP_001560686.1 CDS Cphy_3598 NC_010001.1 4444788 4445633 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB0247 ABC transporter ATP-binding protein; ABC transporter complement(4444788..4445633) Clostridium phytofermentans ISDg 5742623 YP_001560687.1 CDS Cphy_3599 NC_010001.1 4445778 4446899 R PFAM: LytTr DNA-binding region; KEGG: bcy:Bcer98_3804 LytTr DNA-binding region; response regulator receiver protein complement(4445778..4446899) Clostridium phytofermentans ISDg 5742624 YP_001560688.1 CDS Cphy_3600 NC_010001.1 4447277 4448491 R KEGG: csc:Csac_0991 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase complement(4447277..4448491) Clostridium phytofermentans ISDg 5742625 YP_001560689.1 CDS Cphy_3603 NC_010001.1 4450172 4451374 R PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: csc:Csac_0993 homoserine dehydrogenase; homoserine dehydrogenase complement(4450172..4451374) Clostridium phytofermentans ISDg 5742627 YP_001560690.1 CDS Cphy_3604 NC_010001.1 4451492 4451932 R PFAM: amino acid-binding ACT domain protein; KEGG: amt:Amet_0565 amino acid-binding ACT; hypothetical protein complement(4451492..4451932) Clostridium phytofermentans ISDg 5742628 YP_001560691.1 CDS Cphy_3605 NC_010001.1 4452296 4452652 D PFAM: protein of unknown function DUF1232; KEGG: cbe:Cbei_2722 protein of unknown function DUF1232; hypothetical protein 4452296..4452652 Clostridium phytofermentans ISDg 5742629 YP_001560692.1 CDS Cphy_3606 NC_010001.1 4452740 4453996 R KEGG: cth:Cthe_1857 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(4452740..4453996) Clostridium phytofermentans ISDg 5742630 YP_001560693.1 CDS Cphy_3607 NC_010001.1 4454244 4455653 R PFAM: peptidase M23B; KEGG: tte:TTE1975 membrane proteins related to metalloendopeptidase; peptidase M23B complement(4454244..4455653) Clostridium phytofermentans ISDg 5742631 YP_001560694.1 CDS Cphy_3608 NC_010001.1 4455802 4456713 R PFAM: protein of unknown function DUF214; KEGG: ctc:CTC02509 cell division protein ftsX; hypothetical protein complement(4455802..4456713) Clostridium phytofermentans ISDg 5742632 YP_001560695.1 CDS Cphy_3609 NC_010001.1 4456700 4457440 R KEGG: cth:Cthe_1860 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE complement(4456700..4457440) Clostridium phytofermentans ISDg 5742633 YP_001560696.1 CDS Cphy_3610 NC_010001.1 4457545 4458633 R KEGG: cth:Cthe_1861 transcriptional regulator, CdaR; transcriptional regulator CdaR complement(4457545..4458633) Clostridium phytofermentans ISDg 5742634 YP_001560697.1 CDS Cphy_3611 NC_010001.1 4459163 4460275 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein; ABC transporter complement(4459163..4460275) Clostridium phytofermentans ISDg 5742635 YP_001560698.1 CDS Cphy_3612 NC_010001.1 4460518 4461390 R PFAM: protein of unknown function DUF161; KEGG: cth:Cthe_2703 protein of unknown function DUF161; hypothetical protein complement(4460518..4461390) Clostridium phytofermentans ISDg 5742636 YP_001560699.1 CDS Cphy_3613 NC_010001.1 4461416 4461847 R KEGG: pth:PTH_2777 hypothetical membrane protein; hypothetical protein complement(4461416..4461847) Clostridium phytofermentans ISDg 5742637 YP_001560700.1 CDS Cphy_3614 NC_010001.1 4462240 4462968 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ckl:CKL_0780 predicted short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 4462240..4462968 Clostridium phytofermentans ISDg 5742638 YP_001560701.1 CDS Cphy_3615 NC_010001.1 4463242 4464726 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tde:TDE0450 hypothetical protein; hypothetical protein complement(4463242..4464726) Clostridium phytofermentans ISDg 5742639 YP_001560702.1 CDS Cphy_3616 NC_010001.1 4464868 4466925 R PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY1968 hypothetical protein; hypothetical protein complement(4464868..4466925) Clostridium phytofermentans ISDg 5742640 YP_001560703.1 CDS Cphy_3617 NC_010001.1 4467462 4468265 R KEGG: btl:BALH_2620 aminoglycoside N3'-acetyltransferase; aminoglycoside N3'-acetyltransferase-like protein complement(4467462..4468265) Clostridium phytofermentans ISDg 5742641 YP_001560704.1 CDS Cphy_3618 NC_010001.1 4468402 4469928 R PFAM: glycoside hydrolase family 43; KEGG: bad:BAD_0301 pyridine nucleotide-disulphide oxidoreductase; glycoside hydrolase family protein complement(4468402..4469928) Clostridium phytofermentans ISDg 5742642 YP_001560705.1 CDS Cphy_3619 NC_010001.1 4470123 4470851 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: llc:LACR_1474 3-oxoacyl-acyl carrier protein reductase; short-chain dehydrogenase/reductase SDR 4470123..4470851 Clostridium phytofermentans ISDg 5742643 YP_001560706.1 CDS Cphy_3620 NC_010001.1 4471131 4472369 R PFAM: sodium/hydrogen exchanger; KEGG: cbh:CLC_1237 transporter, monovalent cation:proton antiporter-2 (CPA2) family; sodium/hydrogen exchanger complement(4471131..4472369) Clostridium phytofermentans ISDg 5742644 YP_001560707.1 CDS Cphy_3621 NC_010001.1 4472366 4472977 R PFAM: regulatory protein TetR; KEGG: cbh:CLC_1236 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4472366..4472977) Clostridium phytofermentans ISDg 5742645 YP_001560708.1 CDS Cphy_3622 NC_010001.1 4473568 4474779 R PFAM: Amidohydrolase 3; KEGG: btk:BT9727_4230 N-acyl-D-amino-acid deacylase family protein; amidohydrolase complement(4473568..4474779) Clostridium phytofermentans ISDg 5742646 YP_001560709.1 CDS Cphy_3623 NC_010001.1 4474929 4475753 D PFAM: regulatory protein MerR; KEGG: cbo:CBO0895 transcriptional regulator; MerR family transcriptional regulator 4474929..4475753 Clostridium phytofermentans ISDg 5742647 YP_001560710.1 CDS Cphy_3624 NC_010001.1 4475855 4476343 R hypothetical protein complement(4475855..4476343) Clostridium phytofermentans ISDg 5742648 YP_001560711.1 CDS Cphy_3625 NC_010001.1 4476487 4477338 R KEGG: blo:BL0186 possible esterase; esterase complement(4476487..4477338) Clostridium phytofermentans ISDg 5742649 YP_001560712.1 CDS Cphy_3626 NC_010001.1 4477567 4478070 R KEGG: mlo:mll3789 weak similarity to chloramphenicol phosphotransferase; chloramphenicol 3-O-phosphotransferase-like protein complement(4477567..4478070) Clostridium phytofermentans ISDg 5742650 YP_001560713.1 CDS rpsI NC_010001.1 4478341 4478733 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(4478341..4478733) Clostridium phytofermentans ISDg 5742651 YP_001560714.1 CDS rplM NC_010001.1 4478759 4479193 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(4478759..4479193) Clostridium phytofermentans ISDg 5742652 YP_001560715.1 CDS Cphy_3629 NC_010001.1 4479660 4481000 D KEGG: cbe:Cbei_3786 integral membrane sensor signal transduction histidine kinase; Signal transduction histidine kinase-like protein 4479660..4481000 Clostridium phytofermentans ISDg 5742653 YP_001560716.1 CDS Cphy_3630 NC_010001.1 4481009 4481707 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: cbe:Cbei_3785 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 4481009..4481707 Clostridium phytofermentans ISDg 5742654 YP_001560717.1 CDS Cphy_3631 NC_010001.1 4481986 4483098 D hypothetical protein 4481986..4483098 Clostridium phytofermentans ISDg 5742655 YP_001560718.1 CDS Cphy_3632 NC_010001.1 4483225 4483908 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_4728 ABC transporter related; ABC transporter 4483225..4483908 Clostridium phytofermentans ISDg 5742656 YP_001560719.1 CDS Cphy_3633 NC_010001.1 4483905 4485047 D PFAM: protein of unknown function DUF214; KEGG: vfi:VFA0736 ABC transporter permease; hypothetical protein 4483905..4485047 Clostridium phytofermentans ISDg 5742657 YP_001560720.1 CDS Cphy_3634 NC_010001.1 4485291 4486028 R KEGG: cth:Cthe_2939 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A complement(4485291..4486028) Clostridium phytofermentans ISDg 5742658 YP_001560721.1 CDS Cphy_3635 NC_010001.1 4486170 4486982 R PFAM: cobalt transport protein; KEGG: cdf:CD0102 ABC transporter, permease; cobalt transport protein complement(4486170..4486982) Clostridium phytofermentans ISDg 5742659 YP_001560722.1 CDS Cphy_3636 NC_010001.1 4487111 4487971 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4446 ABC transporter related; ABC transporter complement(4487111..4487971) Clostridium phytofermentans ISDg 5742660 YP_001560723.1 CDS Cphy_3637 NC_010001.1 4487952 4488863 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_2683 cobalt ABC transporter, ATP-binding protein; ABC transporter complement(4487952..4488863) Clostridium phytofermentans ISDg 5742661 YP_001560724.1 CDS rplQ NC_010001.1 4489162 4489698 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(4489162..4489698) Clostridium phytofermentans ISDg 5742662 YP_001560725.1 CDS Cphy_3639 NC_010001.1 4489723 4490682 R KEGG: cth:Cthe_2932 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase alpha subunit domain protein; RNA polymerase dimerisation; RNA polymerase insert; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha complement(4489723..4490682) Clostridium phytofermentans ISDg 5742663 YP_001560726.1 CDS Cphy_3640 NC_010001.1 4490755 4491351 R PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: drm:Dred_0242 RNA-binding S4 domain protein; 30S ribosomal protein S4 complement(4490755..4491351) Clostridium phytofermentans ISDg 5742664 YP_001560727.1 CDS Cphy_3641 NC_010001.1 4491368 4491766 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(4491368..4491766) Clostridium phytofermentans ISDg 5742665 YP_001560728.1 CDS rpsM NC_010001.1 4491829 4492197 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(4491829..4492197) Clostridium phytofermentans ISDg 5742666 YP_001560729.1 CDS Cphy_3643 NC_010001.1 4492788 4492901 R PFAM: ribosomal protein L36; KEGG: csc:Csac_2263 ribosomal protein L36; 50S ribosomal protein L36 complement(4492788..4492901) Clostridium phytofermentans ISDg 5742667 YP_001560730.1 CDS Cphy_3644 NC_010001.1 4493093 4493311 R TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1 IF1 family protein; KEGG: cth:Cthe_2927 translation initiation factor IF-1; translation initiation factor IF-1 complement(4493093..4493311) Clostridium phytofermentans ISDg 5742668 YP_001560731.1 CDS Cphy_3645 NC_010001.1 4493407 4494162 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: tte:TTE2270 methionine aminopeptidase; methionine aminopeptidase complement(4493407..4494162) Clostridium phytofermentans ISDg 5742669 YP_001560732.1 CDS adk NC_010001.1 4494268 4494921 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(4494268..4494921) Clostridium phytofermentans ISDg 5742670 YP_001560733.1 CDS Cphy_3647 NC_010001.1 4495093 4496421 R TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: amt:Amet_4458 preprotein translocase, SecY subunit; preprotein translocase subunit SecY complement(4495093..4496421) Clostridium phytofermentans ISDg 5742671 YP_001560734.1 CDS rplO NC_010001.1 4496423 4496863 R late assembly protein; 50S ribosomal protein L15 complement(4496423..4496863) Clostridium phytofermentans ISDg 5742672 YP_001560735.1 CDS rpmD NC_010001.1 4496890 4497072 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(4496890..4497072) Clostridium phytofermentans ISDg 5742673 YP_001560736.1 CDS Cphy_3650 NC_010001.1 4497092 4497598 R TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG: cth:Cthe_2920 ribosomal protein S5-like protein; 30S ribosomal protein S5 complement(4497092..4497598) Clostridium phytofermentans ISDg 5742674 YP_001560737.1 CDS rplR NC_010001.1 4497615 4497983 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(4497615..4497983) Clostridium phytofermentans ISDg 5742675 YP_001560738.1 CDS rplF NC_010001.1 4498001 4498543 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(4498001..4498543) Clostridium phytofermentans ISDg 5742676 YP_001560739.1 CDS rpsH NC_010001.1 4498797 4499198 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(4498797..4499198) Clostridium phytofermentans ISDg 5742677 YP_001560740.1 CDS Cphy_3654 NC_010001.1 4499222 4499392 R PFAM: ribosomal protein S14; KEGG: amt:Amet_4465 ribosomal protein S14; 30S ribosomal protein S14 complement(4499222..4499392) Clostridium phytofermentans ISDg 5742678 YP_001560741.1 CDS rplE NC_010001.1 4499424 4499963 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(4499424..4499963) Clostridium phytofermentans ISDg 5742679 YP_001560742.1 CDS rplX NC_010001.1 4499988 4500305 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(4499988..4500305) Clostridium phytofermentans ISDg 5742680 YP_001560743.1 CDS rplN NC_010001.1 4500320 4500688 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(4500320..4500688) Clostridium phytofermentans ISDg 5742681 YP_001560744.1 CDS Cphy_3658 NC_010001.1 4500749 4501006 R PFAM: ribosomal protein S17; KEGG: cth:Cthe_2912 ribosomal protein S17; 30S ribosomal protein S17 complement(4500749..4501006) Clostridium phytofermentans ISDg 5742682 YP_001560745.1 CDS Cphy_3659 NC_010001.1 4501071 4501280 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(4501071..4501280) Clostridium phytofermentans ISDg 5742683 YP_001560746.1 CDS rplP NC_010001.1 4501270 4501707 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(4501270..4501707) Clostridium phytofermentans ISDg 5742684 YP_001560747.1 CDS Cphy_3661 NC_010001.1 4501707 4502366 R KEGG: gka:GK0112 30S ribosomal protein S3 (BS2); TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; 30S ribosomal protein S3 complement(4501707..4502366) Clostridium phytofermentans ISDg 5742685 YP_001560748.1 CDS rplV NC_010001.1 4502378 4502764 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(4502378..4502764) Clostridium phytofermentans ISDg 5742686 YP_001560749.1 CDS rpsS NC_010001.1 4502998 4503276 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(4502998..4503276) Clostridium phytofermentans ISDg 5742687 YP_001560750.1 CDS rplB NC_010001.1 4503295 4504140 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(4503295..4504140) Clostridium phytofermentans ISDg 5742688 YP_001560751.1 CDS Cphy_3665 NC_010001.1 4504321 4504620 R PFAM: Ribosomal protein L25/L23; KEGG: cdf:CD0075 50S ribosomal protein L23; ribosomal protein L25/L23 complement(4504321..4504620) Clostridium phytofermentans ISDg 5742689 YP_001560752.1 CDS rplD NC_010001.1 4504620 4505240 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(4504620..4505240) Clostridium phytofermentans ISDg 5742690 YP_001560753.1 CDS rplC NC_010001.1 4505269 4505904 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(4505269..4505904) Clostridium phytofermentans ISDg 5742691 YP_001560754.1 CDS rpsJ NC_010001.1 4506096 4506413 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(4506096..4506413) Clostridium phytofermentans ISDg 5742692 YP_001560755.1 CDS Cphy_3669 NC_010001.1 4507271 4509559 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: csc:Csac_2452 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4507271..4509559) Clostridium phytofermentans ISDg 5742693 YP_001560756.1 CDS Cphy_3670 NC_010001.1 4510144 4510467 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: msu:MS0567 hypothetical protein; cupin complement(4510144..4510467) Clostridium phytofermentans ISDg 5742694 YP_001560757.1 CDS Cphy_3671 NC_010001.1 4510691 4511566 R KEGG: cdf:CD3581 hypothetical protein; hypothetical protein complement(4510691..4511566) Clostridium phytofermentans ISDg 5742695 YP_001560758.1 CDS Cphy_3672 NC_010001.1 4512049 4512726 D PFAM: PspA/IM30 family protein; KEGG: dsy:DSY1913 hypothetical protein; phage shock protein A, PspA 4512049..4512726 Clostridium phytofermentans ISDg 5742696 YP_001560759.1 CDS Cphy_3673 NC_010001.1 4512786 4513982 D KEGG: dsy:DSY1914 hypothetical protein; hypothetical protein 4512786..4513982 Clostridium phytofermentans ISDg 5742697 YP_001560760.1 CDS Cphy_3674 NC_010001.1 4513979 4514980 D KEGG: dsy:DSY1915 hypothetical protein; hypothetical protein 4513979..4514980 Clostridium phytofermentans ISDg 5742698 YP_001560761.1 CDS Cphy_3675 NC_010001.1 4514999 4516003 D KEGG: bay:RBAM_006610 YdjI; hypothetical protein 4514999..4516003 Clostridium phytofermentans ISDg 5742699 YP_001560762.1 CDS Cphy_3676 NC_010001.1 4516190 4517305 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pap:PSPA7_3441 hypothetical protein; diguanylate cyclase complement(4516190..4517305) Clostridium phytofermentans ISDg 5742700 YP_001560763.1 CDS Cphy_3677 NC_010001.1 4517601 4518149 R PFAM: BioY protein; KEGG: cbe:Cbei_1913 BioY protein; BioY protein complement(4517601..4518149) Clostridium phytofermentans ISDg 5742701 YP_001560764.1 CDS Cphy_3678 NC_010001.1 4518411 4518959 R KEGG: cac:CAC2331 DTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(4518411..4518959) Clostridium phytofermentans ISDg 5742702 YP_001560765.1 CDS Cphy_3679 NC_010001.1 4519005 4519862 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: drm:Dred_3036 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(4519005..4519862) Clostridium phytofermentans ISDg 5742703 YP_001560766.1 CDS Cphy_3680 NC_010001.1 4519859 4520884 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cbe:Cbei_4754 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(4519859..4520884) Clostridium phytofermentans ISDg 5742704 YP_001560767.1 CDS Cphy_3681 NC_010001.1 4520979 4521860 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cbe:Cbei_4756 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(4520979..4521860) Clostridium phytofermentans ISDg 5742705 YP_001560768.1 CDS Cphy_3682 NC_010001.1 4522254 4523354 R KEGG: amt:Amet_0211 hypothetical protein; hypothetical protein complement(4522254..4523354) Clostridium phytofermentans ISDg 5742706 YP_001560769.1 CDS Cphy_3683 NC_010001.1 4524010 4524876 R KEGG: cbe:Cbei_1903 fructose-1,6-bisphosphate aldolase, class II; TIGRFAM: ketose-bisphosphate aldolase; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II; fructose-1,6-bisphosphate aldolase complement(4524010..4524876) Clostridium phytofermentans ISDg 5742707 YP_001560770.1 CDS Cphy_3684 NC_010001.1 4525018 4525221 R hypothetical protein complement(4525018..4525221) Clostridium phytofermentans ISDg 5742708 YP_001560771.1 CDS Cphy_3685 NC_010001.1 4525470 4526369 R PFAM: phosphoesterase PA-phosphatase related; KEGG: sth:STH2919 phosphatase; PA-phosphatase like phosphoesterase complement(4525470..4526369) Clostridium phytofermentans ISDg 5742709 YP_001560772.1 CDS Cphy_3686 NC_010001.1 4526626 4530393 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(4526626..4530393) Clostridium phytofermentans ISDg 5742710 YP_001560773.1 CDS Cphy_3687 NC_010001.1 4530415 4534251 R TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 3; KEGG: cth:Cthe_2724 DNA-directed RNA polymerase, beta subunit; DNA-directed RNA polymerase subunit beta complement(4530415..4534251) Clostridium phytofermentans ISDg 5742711 YP_001560774.1 CDS Cphy_3688 NC_010001.1 4535099 4537732 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cth:Cthe_2666 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase complement(4535099..4537732) Clostridium phytofermentans ISDg 5742712 YP_001560775.1 CDS Cphy_3689 NC_010001.1 4537867 4539054 R PFAM: major facilitator superfamily MFS_1; KEGG: amt:Amet_3781 major facilitator superfamily MFS_1; major facilitator transporter complement(4537867..4539054) Clostridium phytofermentans ISDg 5742713 YP_001560776.1 CDS rplL NC_010001.1 4539378 4539740 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(4539378..4539740) Clostridium phytofermentans ISDg 5742714 YP_001560777.1 CDS Cphy_3691 NC_010001.1 4539817 4540311 R PFAM: ribosomal protein L10; KEGG: cbe:Cbei_0142 ribosomal protein L10; 50S ribosomal protein L10 complement(4539817..4540311) Clostridium phytofermentans ISDg 5742715 YP_001560778.1 CDS Cphy_3692 NC_010001.1 4540603 4541295 R PFAM: ribosomal protein L1; KEGG: cth:Cthe_2721 ribosomal protein L1; 50S ribosomal protein L1 complement(4540603..4541295) Clostridium phytofermentans ISDg 5742716 YP_001560779.1 CDS Cphy_3693 NC_010001.1 4541354 4541782 R PFAM: ribosomal protein L11; KEGG: cdf:CD0061 50S ribosomal protein L11; 50S ribosomal protein L11 complement(4541354..4541782) Clostridium phytofermentans ISDg 5742717 YP_001560780.1 CDS Cphy_3694 NC_010001.1 4541913 4542431 R TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KEGG: cth:Cthe_2719 NusG antitermination factor; NusG antitermination factor complement(4541913..4542431) Clostridium phytofermentans ISDg 5742718 YP_001560781.1 CDS Cphy_3695 NC_010001.1 4542451 4542681 R TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; Preprotein translocase subunit SecE complement(4542451..4542681) Clostridium phytofermentans ISDg 5742719 YP_001560782.1 CDS Cphy_3696 NC_010001.1 4542731 4542880 R PFAM: ribosomal protein L33; KEGG: amt:Amet_4493 ribosomal protein L33; 50S ribosomal protein L33 complement(4542731..4542880) Clostridium phytofermentans ISDg 5742720 YP_001560783.1 CDS Cphy_3697 NC_010001.1 4543294 4544847 R PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: amt:Amet_2816 response regulator receiver protein; two component AraC family transcriptional regulator complement(4543294..4544847) Clostridium phytofermentans ISDg 5742721 YP_001560784.1 CDS Cphy_3698 NC_010001.1 4545162 4547408 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Ig domain protein group 2 domain protein; KEGG: cpv:cgd6_4840 serine protease, subtilase family, signal peptide; peptidase S8/S53 subtilisin kexin sedolisin 4545162..4547408 Clostridium phytofermentans ISDg 5742722 YP_001560785.1 CDS Cphy_3699 NC_010001.1 4547679 4549472 R TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: cth:Cthe_2452 oligoendopeptidase F; oligoendopeptidase F complement(4547679..4549472) Clostridium phytofermentans ISDg 5742723 YP_001560786.1 CDS Cphy_3700 NC_010001.1 4549489 4550538 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bha:BH1928 transcriptional regulator (LacI family); LacI family transcriptional regulator complement(4549489..4550538) Clostridium phytofermentans ISDg 5742724 YP_001560787.1 CDS Cphy_3701 NC_010001.1 4550621 4551127 R PFAM: Heptaprenyl diphosphate synthase component I; KEGG: cno:NT01CX_0720 hypothetical protein; heptaprenyl diphosphate synthase component I complement(4550621..4551127) Clostridium phytofermentans ISDg 5742725 YP_001560788.1 CDS Cphy_3702 NC_010001.1 4551609 4552958 R PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_3172 protein of unknown function DUF214; hypothetical protein complement(4551609..4552958) Clostridium phytofermentans ISDg 5742726 YP_001560789.1 CDS Cphy_3703 NC_010001.1 4552948 4553475 R KEGG: yli:YALI0B09867g hypothetical protein; hypothetical protein complement(4552948..4553475) Clostridium phytofermentans ISDg 5742727 YP_001560790.1 CDS Cphy_3704 NC_010001.1 4553493 4555967 R KEGG: cth:Cthe_3171 S-layer domain-like protein; S-layer-like domain-containing protein complement(4553493..4555967) Clostridium phytofermentans ISDg 5742728 YP_001560791.1 CDS Cphy_3705 NC_010001.1 4556091 4556972 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_0366 ABC transporter related; ABC transporter complement(4556091..4556972) Clostridium phytofermentans ISDg 5742729 YP_001560792.1 CDS Cphy_3706 NC_010001.1 4557402 4558016 R KEGG: pdi:BDI_1616 hypothetical protein; hypothetical protein complement(4557402..4558016) Clostridium phytofermentans ISDg 5742730 YP_001560793.1 CDS Cphy_3707 NC_010001.1 4558120 4560750 R PFAM: transglutaminase domain protein; KEGG: cth:Cthe_1056 transglutaminase-like protein; transglutaminase domain-containing protein complement(4558120..4560750) Clostridium phytofermentans ISDg 5742731 YP_001560794.1 CDS Cphy_3708 NC_010001.1 4560751 4561965 R PFAM: protein of unknown function DUF58; KEGG: cth:Cthe_1055 protein of unknown function DUF58; hypothetical protein complement(4560751..4561965) Clostridium phytofermentans ISDg 5742732 YP_001560795.1 CDS Cphy_3709 NC_010001.1 4561978 4562928 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: pho:PH0776 methanol dehydrogenase regulatory protein; ATPase complement(4561978..4562928) Clostridium phytofermentans ISDg 5742733 YP_001560796.1 CDS Cphy_3710 NC_010001.1 4563244 4564098 R PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dsy:DSY1521 hypothetical protein; phosphomethylpyrimidine kinase type-1 complement(4563244..4564098) Clostridium phytofermentans ISDg 5742734 YP_001560797.1 CDS Cphy_3711 NC_010001.1 4564425 4565051 R hypothetical protein complement(4564425..4565051) Clostridium phytofermentans ISDg 5742735 YP_001560798.1 CDS Cphy_3712 NC_010001.1 4565097 4565582 R hypothetical protein complement(4565097..4565582) Clostridium phytofermentans ISDg 5742736 YP_001560799.1 CDS Cphy_3713 NC_010001.1 4565569 4565862 R PFAM: regulatory protein MerR; KEGG: dsy:DSY0175 hypothetical protein; MerR family transcriptional regulator complement(4565569..4565862) Clostridium phytofermentans ISDg 5742737 YP_001560800.1 CDS Cphy_3714 NC_010001.1 4566272 4567729 R KEGG: sun:SUN_2457 hypothetical protein; hypothetical protein complement(4566272..4567729) Clostridium phytofermentans ISDg 5742912 YP_001560801.1 CDS Cphy_3715 NC_010001.1 4568100 4568540 R KEGG: ckl:CKL_2980 hypothetical protein; hypothetical protein complement(4568100..4568540) Clostridium phytofermentans ISDg 5742913 YP_001560802.1 CDS Cphy_3716 NC_010001.1 4569180 4570511 D PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: bcl:ABC1433 two-component response regulator; LuxR family transcriptional regulator 4569180..4570511 Clostridium phytofermentans ISDg 5742915 YP_001560803.1 CDS Cphy_3717 NC_010001.1 4570749 4571093 D hypothetical protein 4570749..4571093 Clostridium phytofermentans ISDg 5742916 YP_001560804.1 CDS Cphy_3718 NC_010001.1 4571377 4571826 R PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: tme:Tmel_1315 D-tyrosyl-tRNA(Tyr) deacylase; D-tyrosyl-tRNA(Tyr) deacylase complement(4571377..4571826) Clostridium phytofermentans ISDg 5742917 YP_001560805.1 CDS Cphy_3719 NC_010001.1 4571963 4573135 R KEGG: tte:TTE0463 Phosphopentomutase; TIGRFAM: phosphopentomutase; PFAM: metalloenzyme domain protein; Phosphopentomutase domain protein; phosphopentomutase complement(4571963..4573135) Clostridium phytofermentans ISDg 5742918 YP_001560806.1 CDS Cphy_3720 NC_010001.1 4573309 4573980 D KEGG: ckl:CKL_2512 predicted phosphatase; phosphatase 4573309..4573980 Clostridium phytofermentans ISDg 5742919 YP_001560807.1 CDS Cphy_3721 NC_010001.1 4574057 4575073 R PFAM: glycosyl transferase family 2; KEGG: cac:CAC1488 glycosyltransferase involved in cell wall biogenesis; glycosyl transferase family protein complement(4574057..4575073) Clostridium phytofermentans ISDg 5742920 YP_001560808.1 CDS Cphy_3722 NC_010001.1 4575091 4577664 R hypothetical protein complement(4575091..4577664) Clostridium phytofermentans ISDg 5742921 YP_001560809.1 CDS Cphy_3723 NC_010001.1 4577671 4578906 R KEGG: cpe:CPE1049 hypothetical protein; hypothetical protein complement(4577671..4578906) Clostridium phytofermentans ISDg 5742922 YP_001560810.1 CDS Cphy_3724 NC_010001.1 4579161 4579754 D hypothetical protein 4579161..4579754 Clostridium phytofermentans ISDg 5742923 YP_001560811.1 CDS Cphy_3725 NC_010001.1 4579966 4580838 R PFAM: ATP-binding region ATPase domain protein; KEGG: mta:Moth_1138 histidine kinase; histidine kinase complement(4579966..4580838) Clostridium phytofermentans ISDg 5742924 YP_001560812.1 CDS Cphy_3726 NC_010001.1 4580918 4581334 D PFAM: histidine triad (HIT) protein; KEGG: bha:BH1189 Hit-like protein involved in cell-cycle regulation; histidine triad (HIT) protein 4580918..4581334 Clostridium phytofermentans ISDg 5742925 YP_001560813.1 CDS Cphy_3727 NC_010001.1 4581589 4582656 R KEGG: ctc:CTC01743 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase complement(4581589..4582656) Clostridium phytofermentans ISDg 5742926 YP_001560814.1 CDS Cphy_3728 NC_010001.1 4582778 4583026 R KEGG: bvu:BVU_3470 hypothetical protein; hypothetical protein complement(4582778..4583026) Clostridium phytofermentans ISDg 5742927 YP_001560815.1 CDS Cphy_3729 NC_010001.1 4583287 4583991 D PFAM: purine or other phosphorylase family 1; KEGG: cdf:CD2611 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; adenosylhomocysteine nucleosidase 4583287..4583991 Clostridium phytofermentans ISDg 5742928 YP_001560816.1 CDS Cphy_3730 NC_010001.1 4584093 4584605 D PFAM: 3H domain protein; Helix-turn-helix type 11 domain protein; KEGG: tte:TTE0520 hypothetical protein; helix-turn-helix type 11 domain-containing protein 4584093..4584605 Clostridium phytofermentans ISDg 5742929 YP_001560817.1 CDS Cphy_3731 NC_010001.1 4584824 4585897 D KEGG: amt:Amet_0021 phosphotransferase system, EIIC; phosphotransferase system, EIIC 4584824..4585897 Clostridium phytofermentans ISDg 5742930 YP_001560818.1 CDS Cphy_3732 NC_010001.1 4586209 4586772 R TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: ctc:CTC01815 phosphoesterase; phosphodiesterase complement(4586209..4586772) Clostridium phytofermentans ISDg 5742931 YP_001560819.1 CDS Cphy_3733 NC_010001.1 4587028 4587873 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: mla:Mlab_1047 hypothetical protein; glycerophosphoryl diester phosphodiesterase 4587028..4587873 Clostridium phytofermentans ISDg 5742932 YP_001560820.1 CDS Cphy_3734 NC_010001.1 4588069 4588929 R KEGG: tte:TTE0157 hypothetical protein; hypothetical protein complement(4588069..4588929) Clostridium phytofermentans ISDg 5742933 YP_001560821.1 CDS Cphy_3735 NC_010001.1 4588982 4589401 R TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: bha:BH3753 ATP synthase epsilon subunit; ATP synthase F1 subunit epsilon complement(4588982..4589401) Clostridium phytofermentans ISDg 5742934 YP_001560822.1 CDS Cphy_3736 NC_010001.1 4589411 4590829 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(4589411..4590829) Clostridium phytofermentans ISDg 5742935 YP_001560823.1 CDS Cphy_3737 NC_010001.1 4590848 4591723 R KEGG: amt:Amet_0352 ATP synthase F1, gamma subunit; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; ATP synthase F1 subunit gamma complement(4590848..4591723) Clostridium phytofermentans ISDg 5742936 YP_001560824.1 CDS Cphy_3738 NC_010001.1 4591742 4593250 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(4591742..4593250) Clostridium phytofermentans ISDg 5742937 YP_001560825.1 CDS Cphy_3739 NC_010001.1 4593308 4593856 R TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: pth:PTH_2815 F0F1-type ATP synthase, delta subunit; ATP synthase F1 subunit delta complement(4593308..4593856) Clostridium phytofermentans ISDg 5742938 YP_001560826.1 CDS Cphy_3740 NC_010001.1 4593844 4594428 R TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: cdf:CD3472 ATP synthase B chain; ATP synthase F0 subunit B complement(4593844..4594428) Clostridium phytofermentans ISDg 5742939 YP_001560827.1 CDS Cphy_3741 NC_010001.1 4594468 4594728 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(4594468..4594728) Clostridium phytofermentans ISDg 5742940 YP_001560828.1 CDS Cphy_3742 NC_010001.1 4594777 4595520 R TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: amt:Amet_0346 ATP synthase F0, A subunit; ATP synthase F0 subunit A complement(4594777..4595520) Clostridium phytofermentans ISDg 5742941 YP_001560829.1 CDS Cphy_3743 NC_010001.1 4595559 4595939 R KEGG: amt:Amet_0345 hypothetical protein; hypothetical protein complement(4595559..4595939) Clostridium phytofermentans ISDg 5742942 YP_001560830.1 CDS Cphy_3744 NC_010001.1 4596000 4596293 R KEGG: sat:SYN_00586 hypothetical membrane protein; hypothetical protein complement(4596000..4596293) Clostridium phytofermentans ISDg 5742943 YP_001560831.1 CDS Cphy_3745 NC_010001.1 4596550 4596978 R KEGG: cpr:CPR_2173 ribose 5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; RpiB/LacA/LacB family sugar-phosphate isomerase complement(4596550..4596978) Clostridium phytofermentans ISDg 5742944 YP_001560832.1 CDS Cphy_3746 NC_010001.1 4597110 4597565 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sha:SH0920 low molecular weight protein-tyrosine-phosphatase; protein tyrosine phosphatase complement(4597110..4597565) Clostridium phytofermentans ISDg 5742945 YP_001560833.1 CDS Cphy_3747 NC_010001.1 4597610 4598668 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: cbf:CLI_0197 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein complement(4597610..4598668) Clostridium phytofermentans ISDg 5742946 YP_001560834.1 CDS Cphy_3748 NC_010001.1 4598730 4599443 R PFAM: cell wall hydrolase/autolysin; KEGG: cdf:CD0106 germination-specific N-acetylmuramoyl-L-alanine amidase; cell wall hydrolase/autolysin complement(4598730..4599443) Clostridium phytofermentans ISDg 5742947 YP_001560835.1 CDS Cphy_3749 NC_010001.1 4599498 4601201 R PFAM: glycoside hydrolase family 18; SMART: chitinase II; KEGG: cth:Cthe_2895 glycoside hydrolase, family 18; glycoside hydrolase family protein complement(4599498..4601201) Clostridium phytofermentans ISDg 5742948 YP_001560836.1 CDS Cphy_3750 NC_010001.1 4601831 4602433 R hypothetical protein complement(4601831..4602433) Clostridium phytofermentans ISDg 5742949 YP_001560837.1 CDS Cphy_3751 NC_010001.1 4602556 4603992 R PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: cac:CAC0404 serine/threonine protein kinase fused to TPR repeats domain; serine/threonine protein kinase complement(4602556..4603992) Clostridium phytofermentans ISDg 5742950 YP_001560838.1 CDS Cphy_3752 NC_010001.1 4604264 4605049 D KEGG: cth:Cthe_0085 negative regulator of genetic competence; negative regulator of genetic competence sporulation and motility-like protein 4604264..4605049 Clostridium phytofermentans ISDg 5742951 YP_001560839.1 CDS Cphy_3753 NC_010001.1 4605326 4605526 R KEGG: cth:Cthe_3092 conserved hypothetical protein, CF-27 family; hypothetical protein complement(4605326..4605526) Clostridium phytofermentans ISDg 5744705 YP_001560840.1 CDS Cphy_3754 NC_010001.1 4605787 4605954 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cno:NT01CX_0756 ferredoxin; 4Fe-4S ferredoxin 4605787..4605954 Clostridium phytofermentans ISDg 5744706 YP_001560841.1 CDS Cphy_3755 NC_010001.1 4606180 4607064 R SMART: regulatory protein MerR; KEGG: swo:Swol_0385 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(4606180..4607064) Clostridium phytofermentans ISDg 5744707 YP_001560842.1 CDS Cphy_3756 NC_010001.1 4607336 4608664 R TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: cth:Cthe_2256 replicative DNA helicase; replicative DNA helicase complement(4607336..4608664) Clostridium phytofermentans ISDg 5744708 YP_001560843.1 CDS rplI NC_010001.1 4608679 4609125 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(4608679..4609125) Clostridium phytofermentans ISDg 5744709 YP_001560844.1 CDS Cphy_3758 NC_010001.1 4609126 4611180 R PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cth:Cthe_2258 phosphoesterase, RecJ-like protein; phosphoesterase domain-containing protein complement(4609126..4611180) Clostridium phytofermentans ISDg 5744710 YP_001560845.1 CDS Cphy_3759 NC_010001.1 4611614 4612393 D PFAM: PT repeat-containing protein; KEGG: hwa:HQ1193A probable cell surface glycoprotein; PT repeat-containing protein 4611614..4612393 Clostridium phytofermentans ISDg 5744711 YP_001560846.1 CDS Cphy_3760 NC_010001.1 4612808 4613335 D hypothetical protein 4612808..4613335 Clostridium phytofermentans ISDg 5744712 YP_001560847.1 CDS Cphy_3761 NC_010001.1 4613489 4614553 R hypothetical protein complement(4613489..4614553) Clostridium phytofermentans ISDg 5744713 YP_001560848.1 CDS Cphy_3762 NC_010001.1 4614692 4616020 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_2520 MATE efflux family protein; MATE efflux family protein complement(4614692..4616020) Clostridium phytofermentans ISDg 5744714 YP_001560849.1 CDS Cphy_3763 NC_010001.1 4616349 4617227 D hypothetical protein 4616349..4617227 Clostridium phytofermentans ISDg 5744715 YP_001560850.1 CDS Cphy_3764 NC_010001.1 4617559 4618257 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cbe:Cbei_4660 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(4617559..4618257) Clostridium phytofermentans ISDg 5744716 YP_001560851.1 CDS Cphy_3765 NC_010001.1 4618241 4618942 R hypothetical protein complement(4618241..4618942) Clostridium phytofermentans ISDg 5744717 YP_001560852.1 CDS Cphy_3766 NC_010001.1 4619029 4621161 R PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: tte:TTE2591 N-methylhydaintoinase A; hydantoinase/oxoprolinase complement(4619029..4621161) Clostridium phytofermentans ISDg 5744718 YP_001560853.1 CDS Cphy_3767 NC_010001.1 4621326 4622675 R PFAM: Citrate transporter; KEGG: ooe:OEOE_0129 H+/gluconate symporter; citrate transporter complement(4621326..4622675) Clostridium phytofermentans ISDg 5744719 YP_001560854.1 CDS Cphy_3768 NC_010001.1 4623483 4623866 R hypothetical protein complement(4623483..4623866) Clostridium phytofermentans ISDg 5744720 YP_001560855.1 CDS Cphy_3769 NC_010001.1 4623893 4624492 R hypothetical protein complement(4623893..4624492) Clostridium phytofermentans ISDg 5744721 YP_001560856.1 CDS Cphy_3770 NC_010001.1 4624494 4625195 R hypothetical protein complement(4624494..4625195) Clostridium phytofermentans ISDg 5744722 YP_001560857.1 CDS Cphy_3771 NC_010001.1 4625208 4626509 R KEGG: pin:Ping_1307 predicted antifreeze protein type I; antifreeze protein type I complement(4625208..4626509) Clostridium phytofermentans ISDg 5744723 YP_001560858.1 CDS rpsR NC_010001.1 4626725 4627000 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(4626725..4627000) Clostridium phytofermentans ISDg 5744724 YP_001560859.1 CDS Cphy_3773 NC_010001.1 4627079 4627519 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cth:Cthe_2186 single-strand binding protein; single-strand binding protein complement(4627079..4627519) Clostridium phytofermentans ISDg 5744725 YP_001560860.1 CDS Cphy_3774 NC_010001.1 4627539 4627826 R PFAM: ribosomal protein S6; KEGG: mta:Moth_0128 ribosomal protein S6; 30S ribosomal protein S6 complement(4627539..4627826) Clostridium phytofermentans ISDg 5744726 YP_001560861.1 CDS Cphy_3775 NC_010001.1 4628322 4628507 R PFAM: protein of unknown function DUF951; KEGG: sth:STH3322 hypothetical protein; hypothetical protein complement(4628322..4628507) Clostridium phytofermentans ISDg 5744727 YP_001560862.1 CDS Cphy_3776 NC_010001.1 4628800 4629471 D TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: cac:CAC0882 predicted membrane protein, hemolysin III homolog; hemolysin III family channel protein 4628800..4629471 Clostridium phytofermentans ISDg 5744728 YP_001560863.1 CDS Cphy_3777 NC_010001.1 4630004 4630855 R PFAM: peptidase M23B; KEGG: amt:Amet_0360 peptidase M23B; peptidase M23B complement(4630004..4630855) Clostridium phytofermentans ISDg 5744729 YP_001560864.1 CDS Cphy_3778 NC_010001.1 4630973 4631749 R PFAM: protein of unknown function DUF990; KEGG: tde:TDE0485 membrane protein; hypothetical protein complement(4630973..4631749) Clostridium phytofermentans ISDg 5744730 YP_001560865.1 CDS Cphy_3779 NC_010001.1 4631756 4632532 R KEGG: tde:TDE0486 membrane protein; hypothetical protein complement(4631756..4632532) Clostridium phytofermentans ISDg 5744731 YP_001560866.1 CDS Cphy_3780 NC_010001.1 4632622 4633419 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0487 ABC transporter, ATP-binding protein; ABC transporter complement(4632622..4633419) Clostridium phytofermentans ISDg 5744732 YP_001560867.1 CDS Cphy_3781 NC_010001.1 4633787 4635553 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: lwe:lwe0099 ABC transporter, ATP-binding/permease; ABC transporter related 4633787..4635553 Clostridium phytofermentans ISDg 5744733 YP_001560868.1 CDS Cphy_3782 NC_010001.1 4635540 4637324 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: lwe:lwe0098 ABC transporter, ATP-binding/permease; ABC transporter 4635540..4637324 Clostridium phytofermentans ISDg 5744734 YP_001560869.1 CDS Cphy_3783 NC_010001.1 4637694 4638797 D TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cpe:CPE0284 probable transcriptional regulator; cell envelope-related transcriptional attenuator 4637694..4638797 Clostridium phytofermentans ISDg 5744735 YP_001560870.1 CDS Cphy_3784 NC_010001.1 4638930 4639193 R KEGG: cdf:CD1007 hypothetical protein; hypothetical protein complement(4638930..4639193) Clostridium phytofermentans ISDg 5744736 YP_001560871.1 CDS Cphy_3785 NC_010001.1 4639618 4641696 D PFAM: glycoside hydrolase family 31; KEGG: cpf:CPF_2648 glycosyl hydrolase, family 31; alpha-glucosidase 4639618..4641696 Clostridium phytofermentans ISDg 5744737 YP_001560872.1 CDS Cphy_3786 NC_010001.1 4641842 4641994 R PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_3119 flavin reductase-like, FMN-binding; rubredoxin-type Fe(Cys)4 protein complement(4641842..4641994) Clostridium phytofermentans ISDg 5744738 YP_001560873.1 CDS Cphy_3787 NC_010001.1 4642383 4643114 D TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: cbo:CBO0416 probable acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 4642383..4643114 Clostridium phytofermentans ISDg 5744739 YP_001560874.1 CDS Cphy_3788 NC_010001.1 4643248 4643703 D hypothetical protein 4643248..4643703 Clostridium phytofermentans ISDg 5744740 YP_001560875.1 CDS Cphy_3789 NC_010001.1 4643963 4644391 R PFAM: Domain of unknown function DUF1934; KEGG: tte:TTE2534 hypothetical protein; hypothetical protein complement(4643963..4644391) Clostridium phytofermentans ISDg 5744741 YP_001560876.1 CDS Cphy_3790 NC_010001.1 4644421 4645233 R KEGG: csc:Csac_1373 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase complement(4644421..4645233) Clostridium phytofermentans ISDg 5744742 YP_001560877.1 CDS Cphy_3791 NC_010001.1 4645252 4646313 R KEGG: cth:Cthe_1938 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase complement(4645252..4646313) Clostridium phytofermentans ISDg 5744743 YP_001560878.1 CDS Cphy_3792 NC_010001.1 4646742 4647464 D TIGRFAM: stage II sporulation protein R; PFAM: Sporulation stage II protein R; KEGG: cbh:CLC_0174 stage II sporulation protein R; stage II sporulation protein R 4646742..4647464 Clostridium phytofermentans ISDg 5744744 YP_001560879.1 CDS ipk NC_010001.1 4647589 4648464 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 4647589..4648464 Clostridium phytofermentans ISDg 5744745 YP_001560880.1 CDS Cphy_3794 NC_010001.1 4648777 4650348 D PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_2402 peptidoglycan-binding LysM; peptidoglycan-binding LysM 4648777..4650348 Clostridium phytofermentans ISDg 5744746 YP_001560881.1 CDS Cphy_3795 NC_010001.1 4650524 4651096 R KEGG: amt:Amet_0774 hypothetical protein; hypothetical protein complement(4650524..4651096) Clostridium phytofermentans ISDg 5744747 YP_001560882.1 CDS Cphy_3796 NC_010001.1 4651348 4652070 R PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: tte:TTE0889 predicted metal-dependent phosphoesterase (PHP family); phosphotransferase domain-containing protein complement(4651348..4652070) Clostridium phytofermentans ISDg 5744748 YP_001560883.1 CDS Cphy_3797 NC_010001.1 4652051 4652398 R KEGG: tte:TTE0888 hypothetical protein; hypothetical protein complement(4652051..4652398) Clostridium phytofermentans ISDg 5744749 YP_001560884.1 CDS Cphy_3798 NC_010001.1 4652419 4653702 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: tte:TTE0887 ferredoxin 2; Fe-S cluster domain-containing protein complement(4652419..4653702) Clostridium phytofermentans ISDg 5744750 YP_001560885.1 CDS Cphy_3799 NC_010001.1 4653842 4654264 R KEGG: cth:Cthe_0334 anti-sigma regulatory factor, serine/threonine protein kinase; anti-sigma regulatory factor complement(4653842..4654264) Clostridium phytofermentans ISDg 5744751 YP_001560886.1 CDS Cphy_3800 NC_010001.1 4654261 4654611 R PFAM: DRTGG domain protein; KEGG: cth:Cthe_0333 hypothetical protein; DRTGG domain-containing protein complement(4654261..4654611) Clostridium phytofermentans ISDg 5744752 YP_001560887.1 CDS Cphy_3801 NC_010001.1 4655038 4655532 D PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: cth:Cthe_0338 NADH-quinone oxidoreductase, E subunit; NADH dehydrogenase (ubiquinone) 24 kDa subunit 4655038..4655532 Clostridium phytofermentans ISDg 5744753 YP_001560888.1 CDS Cphy_3802 NC_010001.1 4655605 4656162 D PFAM: ATP-binding region ATPase domain protein; KEGG: pdi:BDI_1092 hypothetical protein; histidine kinase 4655605..4656162 Clostridium phytofermentans ISDg 5744754 YP_001560889.1 CDS Cphy_3803 NC_010001.1 4656224 4656595 D KEGG: csc:Csac_1862 hypothetical protein; hypothetical protein 4656224..4656595 Clostridium phytofermentans ISDg 5744755 YP_001560890.1 CDS Cphy_3804 NC_010001.1 4656611 4658398 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: csc:Csac_1863 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 4656611..4658398 Clostridium phytofermentans ISDg 5744756 YP_001560891.1 CDS Cphy_3805 NC_010001.1 4658458 4660206 D TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: cth:Cthe_0342 hydrogenase, Fe-only; hydrogenase, Fe-only 4658458..4660206 Clostridium phytofermentans ISDg 5744757 YP_001560892.1 CDS Cphy_3806 NC_010001.1 4660386 4660784 R hypothetical protein complement(4660386..4660784) Clostridium phytofermentans ISDg 5744758 YP_001560893.1 CDS Cphy_3807 NC_010001.1 4660862 4661695 R hypothetical protein complement(4660862..4661695) Clostridium phytofermentans ISDg 5744759 YP_001560894.1 CDS Cphy_3808 NC_010001.1 4661876 4662448 R KEGG: cdf:CD1903 lipoprotein signal peptidase; lipoprotein signal peptidase complement(4661876..4662448) Clostridium phytofermentans ISDg 5744760 YP_001560895.1 CDS Cphy_3809 NC_010001.1 4662474 4662908 R PFAM: GCN5-related N-acetyltransferase; KEGG: bat:BAS3058 spermine/spermidine acetyltransferase; N-acetyltransferase GCN5 complement(4662474..4662908) Clostridium phytofermentans ISDg 5744761 YP_001560896.1 CDS Cphy_3810 NC_010001.1 4663300 4664256 D PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tte:TTE0367 MoxR-like ATPases; ATPase 4663300..4664256 Clostridium phytofermentans ISDg 5744762 YP_001560897.1 CDS Cphy_3811 NC_010001.1 4664480 4665622 D PFAM: protein of unknown function DUF58; KEGG: csc:Csac_0672 protein of unknown function DUF58; hypothetical protein 4664480..4665622 Clostridium phytofermentans ISDg 5744763 YP_001560898.1 CDS Cphy_3812 NC_010001.1 4665912 4666826 D hypothetical protein 4665912..4666826 Clostridium phytofermentans ISDg 5744764 YP_001560899.1 CDS Cphy_3813 NC_010001.1 4666907 4667326 D hypothetical protein 4666907..4667326 Clostridium phytofermentans ISDg 5744765 YP_001560900.1 CDS Cphy_3814 NC_010001.1 4667936 4668178 D PFAM: protein of unknown function DUF1021; KEGG: cth:Cthe_2401 protein of unknown function DUF1021; hypothetical protein 4667936..4668178 Clostridium phytofermentans ISDg 5744766 YP_001560901.1 CDS Cphy_3815 NC_010001.1 4668370 4668768 D PFAM: ferric-uptake regulator; KEGG: chy:CHY_1135 transcriptional regulator, Fur family; ferric uptake regulator family protein 4668370..4668768 Clostridium phytofermentans ISDg 5744767 YP_001560902.1 CDS Cphy_3816 NC_010001.1 4669320 4669862 D PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cdf:CD1474 ruberythrin; rubrerythrin 4669320..4669862 Clostridium phytofermentans ISDg 5744768 YP_001560903.1 CDS Cphy_3817 NC_010001.1 4670157 4670885 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bsu:BG12973 similar to hypothetical proteins; HAD family hydrolase 4670157..4670885 Clostridium phytofermentans ISDg 5744769 YP_001560904.1 CDS Cphy_3818 NC_010001.1 4671174 4672757 R PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cno:NT01CX_0997 ATP-dependent RNA helicase; DEAD/DEAH box helicase complement(4671174..4672757) Clostridium phytofermentans ISDg 5744770 YP_001560905.1 CDS Cphy_3819 NC_010001.1 4673155 4675740 R KEGG: sfu:Sfum_0263 ATPase AAA-2 domain protein; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB complement(4673155..4675740) Clostridium phytofermentans ISDg 5744771 YP_001560906.1 CDS Cphy_3820 NC_010001.1 4676284 4677741 R PFAM: PGAP1 family protein; KEGG: oih:OB2742 hypothetical protein; PGAP1 family protein complement(4676284..4677741) Clostridium phytofermentans ISDg 5744772 YP_001560907.1 CDS Cphy_3821 NC_010001.1 4677960 4678865 R PFAM: band 7 protein; KEGG: cth:Cthe_0666 HflC protein; hypothetical protein complement(4677960..4678865) Clostridium phytofermentans ISDg 5744773 YP_001560908.1 CDS Cphy_3822 NC_010001.1 4678867 4679802 R TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: cth:Cthe_0665 HflK protein; HflK protein complement(4678867..4679802) Clostridium phytofermentans ISDg 5744774 YP_001560909.1 CDS Cphy_3823 NC_010001.1 4680283 4681890 R KEGG: rno:679495 hypothetical protein LOC679495; hypothetical protein complement(4680283..4681890) Clostridium phytofermentans ISDg 5744775 YP_001560910.1 CDS Cphy_3824 NC_010001.1 4682035 4683078 R TIGRFAM: spore coat protein, CotS family; KEGG: ctc:CTC00273 spore coat protein; CotS family spore coat protein complement(4682035..4683078) Clostridium phytofermentans ISDg 5744776 YP_001560911.1 CDS Cphy_3825 NC_010001.1 4683234 4684028 R hypothetical protein complement(4683234..4684028) Clostridium phytofermentans ISDg 5744777 YP_001560912.1 CDS Cphy_3826 NC_010001.1 4684021 4684494 R KEGG: cdf:CD2186 phage-related hypothetical protein; hypothetical protein complement(4684021..4684494) Clostridium phytofermentans ISDg 5744778 YP_001560913.1 CDS Cphy_3827 NC_010001.1 4684731 4686110 R PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: ctc:CTC01205 tRNA nucleotidyltransferase (CCA-adding enzyme); polynucleotide adenylyltransferase complement(4684731..4686110) Clostridium phytofermentans ISDg 5744779 YP_001560914.1 CDS Cphy_3828 NC_010001.1 4686173 4687300 R PFAM: lipolytic protein G-D-S-L family; KEGG: ctc:CTC01503 phospholipase-subfamily protein; GDSL family lipase complement(4686173..4687300) Clostridium phytofermentans ISDg 5744780 YP_001560915.1 CDS Cphy_3829 NC_010001.1 4687654 4688367 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cbe:Cbei_4096 GntR domain protein; GntR family transcriptional regulator 4687654..4688367 Clostridium phytofermentans ISDg 5744781 YP_001560916.1 CDS Cphy_3830 NC_010001.1 4688933 4690654 D PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: cbe:Cbei_4095 dihydroxy-acid dehydratase; dihydroxy-acid dehydratase 4688933..4690654 Clostridium phytofermentans ISDg 5744782 YP_001560917.1 CDS Cphy_3831 NC_010001.1 4690700 4692124 D TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: gtn:GTNG_1835 low-affinity gluconate transporter; gluconate transporter 4690700..4692124 Clostridium phytofermentans ISDg 5744783 YP_001560918.1 CDS ileS NC_010001.1 4692224 4695499 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase complement(4692224..4695499) Clostridium phytofermentans ISDg 5744784 YP_001560919.1 CDS Cphy_3833 NC_010001.1 4696106 4696300 D hypothetical protein 4696106..4696300 Clostridium phytofermentans ISDg 5744785 YP_001560920.1 CDS Cphy_3834 NC_010001.1 4696423 4697796 R catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase complement(4696423..4697796) Clostridium phytofermentans ISDg 5744786 YP_001560921.1 CDS Cphy_3835 NC_010001.1 4698116 4698547 R PFAM: regulatory protein MarR; KEGG: dsy:DSY0928 hypothetical protein; MarR family transcriptional regulator complement(4698116..4698547) Clostridium phytofermentans ISDg 5744787 YP_001560922.1 CDS Cphy_3836 NC_010001.1 4698915 4700372 R TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; KEGG: amt:Amet_0094 nicotinate phosphoribosyltransferase; nicotinate phosphoribosyltransferase complement(4698915..4700372) Clostridium phytofermentans ISDg 5744788 YP_001560923.1 CDS Cphy_3837 NC_010001.1 4700500 4701933 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(4700500..4701933) Clostridium phytofermentans ISDg 5744789 YP_001560924.1 CDS Cphy_3838 NC_010001.1 4702396 4703430 R TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118; KEGG: tte:TTE0022 predicted permease; sporulation integral membrane protein YtvI complement(4702396..4703430) Clostridium phytofermentans ISDg 5744790 YP_001560925.1 CDS Cphy_3839 NC_010001.1 4703710 4704465 R KEGG: msi:Msm_0734 cytidylate kinase, Cmk; cytidylate kinase complement(4703710..4704465) Clostridium phytofermentans ISDg 5744791 YP_001560926.1 CDS Cphy_3840 NC_010001.1 4704694 4705278 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1490 hypothetical protein; ABC transporter complement(4704694..4705278) Clostridium phytofermentans ISDg 5744792 YP_001560927.1 CDS Cphy_3841 NC_010001.1 4705364 4706224 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1489 hypothetical protein; binding-protein-dependent transport system inner membrane protein complement(4705364..4706224) Clostridium phytofermentans ISDg 5744793 YP_001560928.1 CDS Cphy_3842 NC_010001.1 4706458 4707231 R KEGG: cth:Cthe_1411 tryptophan synthase, alpha subunit; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; tryptophan synthase subunit alpha complement(4706458..4707231) Clostridium phytofermentans ISDg 5744794 YP_001560929.1 CDS Cphy_3843 NC_010001.1 4707224 4708408 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(4707224..4708408) Clostridium phytofermentans ISDg 5744795 YP_001560930.1 CDS Cphy_3844 NC_010001.1 4708443 4709099 R PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: cac:CAC3159 phosphoribosylanthranilate isomerase; phosphoribosylanthranilate isomerase complement(4708443..4709099) Clostridium phytofermentans ISDg 5744796 YP_001560931.1 CDS trpC NC_010001.1 4709206 4710021 R involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase complement(4709206..4710021) Clostridium phytofermentans ISDg 5744797 YP_001560932.1 CDS trpD NC_010001.1 4710025 4711035 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(4710025..4711035) Clostridium phytofermentans ISDg 5744798 YP_001560933.1 CDS Cphy_3847 NC_010001.1 4711044 4711616 R TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: cth:Cthe_0874 glutamine amidotransferase of anthranilate synthase; glutamine amidotransferase of anthranilate synthase complement(4711044..4711616) Clostridium phytofermentans ISDg 5744799 YP_001560934.1 CDS Cphy_3848 NC_010001.1 4711613 4713079 R KEGG: msi:Msm_1146 anthranilate/para-aminobenzoate synthase component I, TrpE; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; anthranilate synthase component I complement(4711613..4713079) Clostridium phytofermentans ISDg 5744800 YP_001560935.1 CDS Cphy_3849 NC_010001.1 4713700 4714179 R KEGG: lbl:LBL_1556 endoflagellar biosynthesis chaperone; hypothetical protein complement(4713700..4714179) Clostridium phytofermentans ISDg 5744801 YP_001560936.1 CDS Cphy_3850 NC_010001.1 4714233 4715741 R PFAM: flagellin domain protein; KEGG: drm:Dred_2433 flagellin domain protein; flagellin domain-containing protein complement(4714233..4715741) Clostridium phytofermentans ISDg 5744802 YP_001560937.1 CDS Cphy_3851 NC_010001.1 4715762 4719172 R KEGG: pfa:PF11_0507 antigen 332; hypothetical protein complement(4715762..4719172) Clostridium phytofermentans ISDg 5744803 YP_001560938.1 CDS Cphy_3852 NC_010001.1 4719604 4721364 D PFAM: protein of unknown function DUF885; KEGG: lbl:LBL_0029 hypothetical protein; hypothetical protein 4719604..4721364 Clostridium phytofermentans ISDg 5744804 YP_001560939.1 CDS Cphy_3853 NC_010001.1 4721888 4723555 D KEGG: fno:Fnod_1444 phosphoenolpyruvate carboxykinase (ATP); phosphoenolpyruvate carboxykinase (ATP) 4721888..4723555 Clostridium phytofermentans ISDg 5744805 YP_001560940.1 CDS Cphy_3854 NC_010001.1 4724145 4726538 D PFAM: carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: vch:VC0612 cellobiose/cellodextrin-phosphorylase; glycosyltransferase 4724145..4726538 Clostridium phytofermentans ISDg 5744806 YP_001560941.1 CDS Cphy_3855 NC_010001.1 4726828 4728252 D PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: vpa:VP2488 phosphoglucomutase/phosphomannomutase; phosphomannomutase 4726828..4728252 Clostridium phytofermentans ISDg 5744807 YP_001560942.1 CDS Cphy_3856 NC_010001.1 4728682 4729857 R PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(4728682..4729857) Clostridium phytofermentans ISDg 5744808 YP_001560943.1 CDS Cphy_3857 NC_010001.1 4730021 4731766 D PFAM: histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: csc:Csac_0683 histidine kinase internal region; signal transduction histidine kinase LytS 4730021..4731766 Clostridium phytofermentans ISDg 5744809 YP_001560944.1 CDS Cphy_3858 NC_010001.1 4731867 4733216 D PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_0682 extracellular solute-binding protein, family 1; extracellular solute-binding protein 4731867..4733216 Clostridium phytofermentans ISDg 5744810 YP_001560945.1 CDS Cphy_3859 NC_010001.1 4733354 4734235 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0775 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein 4733354..4734235 Clostridium phytofermentans ISDg 5744811 YP_001560946.1 CDS Cphy_3860 NC_010001.1 4734248 4735123 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0776 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein 4734248..4735123 Clostridium phytofermentans ISDg 5744812 YP_001560947.1 CDS Cphy_3861 NC_010001.1 4735380 4736159 D PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bcl:ABC3646 two-component response regulator; two component AraC family transcriptional regulator 4735380..4736159 Clostridium phytofermentans ISDg 5744813 YP_001560948.1 CDS Cphy_3862 NC_010001.1 4736925 4744298 D PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; KEGG: tpt:Tpet_0863 endo-1,4-beta-xylanase; endo-1,4-beta-xylanase 4736925..4744298 Clostridium phytofermentans ISDg 5744815 YP_001560949.1 CDS Cphy_3863 NC_010001.1 4744376 4745365 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1189 ABC transporter related protein; ABC transporter complement(4744376..4745365) Clostridium phytofermentans ISDg 5744816 YP_001560950.1 CDS Cphy_3864 NC_010001.1 4745367 4746149 R PFAM: protein of unknown function DUF990; KEGG: cth:Cthe_1188 protein of unknown function DUF990; hypothetical protein complement(4745367..4746149) Clostridium phytofermentans ISDg 5744817 YP_001560951.1 CDS Cphy_3865 NC_010001.1 4746361 4747179 R PFAM: protein of unknown function DUF990; KEGG: cth:Cthe_1187 protein of unknown function DUF990; hypothetical protein complement(4746361..4747179) Clostridium phytofermentans ISDg 5744818 YP_001560952.1 CDS Cphy_3866 NC_010001.1 4747182 4748348 R PFAM: beta-lactamase; KEGG: bay:RBAM_014410 MlnI; beta-lactamase complement(4747182..4748348) Clostridium phytofermentans ISDg 5744819 YP_001560953.1 CDS Cphy_3867 NC_010001.1 4748822 4750540 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cno:NT01CX_2117 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(4748822..4750540) Clostridium phytofermentans ISDg 5744820 YP_001560954.1 CDS Cphy_3868 NC_010001.1 4750732 4751193 R KEGG: fnu:FN1023 5-Nitroimidazole antibiotic resistance protein; 5-nitroimidazole antibiotic resistance protein complement(4750732..4751193) Clostridium phytofermentans ISDg 5744821 YP_001560955.1 CDS Cphy_3869 NC_010001.1 4751394 4755689 R PFAM: Fibronectin type III domain protein; KEGG: bha:BH0494 exopolygalacturonate lyase; fibronectin type III domain-containing protein complement(4751394..4755689) Clostridium phytofermentans ISDg 5744822 YP_001560956.1 CDS Cphy_3870 NC_010001.1 4756161 4757225 R KEGG: dsy:DSY1488 hypothetical protein; hypothetical protein complement(4756161..4757225) Clostridium phytofermentans ISDg 5744823 YP_001560957.1 CDS Cphy_3871 NC_010001.1 4757422 4757670 R KEGG: cbe:Cbei_4440 hypothetical protein; hypothetical protein complement(4757422..4757670) Clostridium phytofermentans ISDg 5744824 YP_001560958.1 CDS Cphy_3872 NC_010001.1 4757925 4758614 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC0321 response regulator (CheY-like domain, HTH domain); two component transcriptional regulator complement(4757925..4758614) Clostridium phytofermentans ISDg 5744825 YP_001560959.1 CDS Cphy_3873 NC_010001.1 4758773 4760314 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cac:CAC0317 sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(4758773..4760314) Clostridium phytofermentans ISDg 5744826 YP_001560960.1 CDS Cphy_3874 NC_010001.1 4760727 4761917 R PFAM: S-adenosylmethionine synthetase; KEGG: bpu:BPUM_2686 methionine adenosyltransferase; methionine adenosyltransferase complement(4760727..4761917) Clostridium phytofermentans ISDg 5744827 YP_001560961.1 CDS Cphy_3875 NC_010001.1 4762298 4762492 R PFAM: Heavy metal transport/detoxification protein; heavy metal transport/detoxification protein complement(4762298..4762492) Clostridium phytofermentans ISDg 5744828 YP_001560962.1 CDS Cphy_3876 NC_010001.1 4762599 4762910 R PFAM: protein of unknown function DUF156; KEGG: dsy:DSY2565 hypothetical protein; hypothetical protein complement(4762599..4762910) Clostridium phytofermentans ISDg 5744829 YP_001560963.1 CDS Cphy_3877 NC_010001.1 4762911 4765193 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY4510 hypothetical protein; copper-translocating P-type ATPase complement(4762911..4765193) Clostridium phytofermentans ISDg 5744830 YP_001560964.1 CDS Cphy_3878 NC_010001.1 4765822 4766910 D KEGG: cth:Cthe_0898 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 4765822..4766910 Clostridium phytofermentans ISDg 5744831 YP_001560965.1 CDS Cphy_3879 NC_010001.1 4767143 4768441 R TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: csc:Csac_1198 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(4767143..4768441) Clostridium phytofermentans ISDg 5742276 YP_001560966.1 CDS Cphy_3880 NC_010001.1 4768723 4769235 R PFAM: shikimate kinase; KEGG: mem:Memar_2255 shikimate kinase; shikimate kinase complement(4768723..4769235) Clostridium phytofermentans ISDg 5742277 YP_001560967.1 CDS Cphy_3881 NC_010001.1 4769222 4769851 R PFAM: flavin reductase domain protein FMN-binding; KEGG: bvu:BVU_3339 flavoredoxin; flavin reductase domain-containing protein complement(4769222..4769851) Clostridium phytofermentans ISDg 5742278 YP_001560968.1 CDS Cphy_3882 NC_010001.1 4770066 4770407 D KEGG: ctc:CTC00234 cell wall hydrolase; hypothetical protein 4770066..4770407 Clostridium phytofermentans ISDg 5742279 YP_001560969.1 CDS Cphy_3883 NC_010001.1 4770533 4772596 R KEGG: tva:TVAG_244940 viral A-type inclusion protein, Pfam: DUF2013 Spectrin DUF1945 EzrA Vicilin_N Myosin_tail_1 ATG16 HrpB7 Tektin DUF869 KAR9 Pox_A_type_inc Prefoldin_2 Rad50_zn_hook Hemerythrin Filament Microtub_assoc SF-assemblin Apolipoprotein MpPF2 BRE1 Phage_GP20 PROSITE: GLU_RICH; hypothetical protein complement(4770533..4772596) Clostridium phytofermentans ISDg 5742280 YP_001560970.1 CDS Cphy_3884 NC_010001.1 4772764 4773486 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC2932 ABC-type MDR transporter, ATPase component; ABC transporter complement(4772764..4773486) Clostridium phytofermentans ISDg 5742281 YP_001560971.1 CDS Cphy_3885 NC_010001.1 4773691 4775520 R TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC01847 fumarate reductase flavoprotein subunit; flavocytochrome c complement(4773691..4775520) Clostridium phytofermentans ISDg 5742282 YP_001560972.1 CDS Cphy_3886 NC_010001.1 4775742 4777484 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: ctc:CTC01848 two-component sensor kinase YesM; integral membrane sensor signal transduction histidine kinase 4775742..4777484 Clostridium phytofermentans ISDg 5742283 YP_001560973.1 CDS Cphy_3887 NC_010001.1 4777459 4778217 D PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: ctc:CTC01849 transcriptional regulatory protein; two component AraC family transcriptional regulator 4777459..4778217 Clostridium phytofermentans ISDg 5742284 YP_001560974.1 CDS Cphy_3888 NC_010001.1 4778508 4782932 R KEGG: cpr:CPR_0357 hypothetical protein; chromosome segregation ATPase-like protein complement(4778508..4782932) Clostridium phytofermentans ISDg 5742285 YP_001560975.1 CDS Cphy_3889 NC_010001.1 4782919 4783659 R KEGG: cpr:CPR_0356 hypothetical protein; hypothetical protein complement(4782919..4783659) Clostridium phytofermentans ISDg 5742286 YP_001560976.1 CDS Cphy_3890 NC_010001.1 4783831 4785378 R KEGG: bce:BC0947 hypothetical protein; hypothetical protein complement(4783831..4785378) Clostridium phytofermentans ISDg 5742287 YP_001560977.1 CDS Cphy_3891 NC_010001.1 4785444 4787759 R PFAM: cyclic nucleotide-binding; KEGG: swo:Swol_0580 hypothetical protein; cyclic nucleotide-binding protein complement(4785444..4787759) Clostridium phytofermentans ISDg 5742288 YP_001560978.1 CDS Cphy_3892 NC_010001.1 4788544 4789905 R TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cno:NT01CX_0361 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator complement(4788544..4789905) Clostridium phytofermentans ISDg 5742290 YP_001560979.1 CDS Cphy_3893 NC_010001.1 4790255 4790740 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bha:BH0033 Cu binding protein (Mn oxidation); zinc-binding CMP/dCMP deaminase 4790255..4790740 Clostridium phytofermentans ISDg 5742291 YP_001560980.1 CDS Cphy_3894 NC_010001.1 4790737 4791435 D TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: amt:Amet_1388 anaerobic ribonucleoside-triphosphate reductase activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein 4790737..4791435 Clostridium phytofermentans ISDg 5742292 YP_001560981.1 CDS Cphy_3895 NC_010001.1 4791616 4792167 D PFAM: GCN5-related N-acetyltransferase; KEGG: bca:BCE_4217 ribosomal-protein-alanine acetyltransferase; N-acetyltransferase GCN5 4791616..4792167 Clostridium phytofermentans ISDg 5742293 YP_001560982.1 CDS Cphy_3896 NC_010001.1 4792329 4793756 R KEGG: tva:TVAG_244940 viral A-type inclusion protein, Pfam: DUF2013 Spectrin DUF1945 EzrA Vicilin_N Myosin_tail_1 ATG16 HrpB7 Tektin DUF869 KAR9 Pox_A_type_inc Prefoldin_2 Rad50_zn_hook Hemerythrin Filament Microtub_assoc SF-assemblin Apolipoprotein MpPF2 BRE1 Phage_GP20 PROSITE: GLU_RICH; hypothetical protein complement(4792329..4793756) Clostridium phytofermentans ISDg 5742294 YP_001560983.1 CDS Cphy_3897 NC_010001.1 4794020 4795861 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD1405 ABC transporter, ATP-binding protein; ABC transporter 4794020..4795861 Clostridium phytofermentans ISDg 5742295 YP_001560984.1 CDS Cphy_3898 NC_010001.1 4796148 4797032 R PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC3648 acetyltransferase (with duplicated domains), possibly RimI-like protein; N-acetyltransferase GCN5 complement(4796148..4797032) Clostridium phytofermentans ISDg 5742296 YP_001560985.1 CDS Cphy_3899 NC_010001.1 4797062 4797934 R TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: amt:Amet_0138 dimethyladenosine transferase; dimethyladenosine transferase complement(4797062..4797934) Clostridium phytofermentans ISDg 5742297 YP_001560986.1 CDS Cphy_3900 NC_010001.1 4798055 4798843 R TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: cno:NT01CX_0686 hydrolase, TatD family; TatD family hydrolase complement(4798055..4798843) Clostridium phytofermentans ISDg 5742298 YP_001560987.1 CDS Cphy_3901 NC_010001.1 4798910 4799812 R KEGG: cbf:CLI_1758 fructose-1-phosphate kinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase complement(4798910..4799812) Clostridium phytofermentans ISDg 5742299 YP_001560988.1 CDS Cphy_3902 NC_010001.1 4799919 4800206 R hypothetical protein complement(4799919..4800206) Clostridium phytofermentans ISDg 5742300 YP_001560989.1 CDS Cphy_3903 NC_010001.1 4800593 4800967 D PFAM: regulatory protein GntR HTH; KEGG: ckl:CKL_0385 transcriptional regulator; GntR family transcriptional regulator 4800593..4800967 Clostridium phytofermentans ISDg 5742301 YP_001560990.1 CDS Cphy_3904 NC_010001.1 4800970 4801848 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_0384 predicted ABC transporter, ATPase component; ABC transporter 4800970..4801848 Clostridium phytofermentans ISDg 5742302 YP_001560991.1 CDS Cphy_3905 NC_010001.1 4801932 4802546 D KEGG: ckl:CKL_0383 predicted transporter protein; transporter protein 4801932..4802546 Clostridium phytofermentans ISDg 5742303 YP_001560992.1 CDS Cphy_3906 NC_010001.1 4802885 4804489 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: ckl:CKL_0307 Pts1; phosphoenolpyruvate-protein phosphotransferase 4802885..4804489 Clostridium phytofermentans ISDg 5742304 YP_001560993.1 CDS Cphy_3907 NC_010001.1 4804493 4805017 R PFAM: nucleoside recognition domain protein; KEGG: cth:Cthe_2098 nucleoside recognition; nucleoside recognition domain-containing protein complement(4804493..4805017) Clostridium phytofermentans ISDg 5742305 YP_001560994.1 CDS Cphy_3908 NC_010001.1 4805102 4805692 R KEGG: bha:BH1574 spore maturation protein; spore maturation protein complement(4805102..4805692) Clostridium phytofermentans ISDg 5742306 YP_001560995.1 CDS Cphy_3909 NC_010001.1 4806279 4806536 D TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: swo:Swol_0047 transcription regulator AbrB; AbrB family transcriptional regulator 4806279..4806536 Clostridium phytofermentans ISDg 5742307 YP_001560996.1 CDS Cphy_3910 NC_010001.1 4806775 4807620 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cth:Cthe_2101 protein of unknown function UPF0011; uroporphyrin-III C/tetrapyrrole methyltransferase complement(4806775..4807620) Clostridium phytofermentans ISDg 5742308 YP_001560997.1 CDS Cphy_3911 NC_010001.1 4807645 4808415 R PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: amt:Amet_0090 methyltransferase small; methyltransferase type 11 complement(4807645..4808415) Clostridium phytofermentans ISDg 5742309 YP_001560998.1 CDS Cphy_3912 NC_010001.1 4808408 4809310 R PFAM: PSP1 domain protein; KEGG: ckl:CKL_3792 predicted peptidase; PSP1 domain-containing protein complement(4808408..4809310) Clostridium phytofermentans ISDg 5742310 YP_001560999.1 CDS Cphy_3913 NC_010001.1 4809407 4810399 R TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: amt:Amet_0084 DNA polymerase III, delta prime subunit; DNA polymerase III, delta prime subunit complement(4809407..4810399) Clostridium phytofermentans ISDg 5742311 YP_001561000.1 CDS Cphy_3914 NC_010001.1 4810421 4810861 R PFAM: protein of unknown function DUF327; KEGG: cth:Cthe_2106 protein of unknown function DUF327; hypothetical protein complement(4810421..4810861) Clostridium phytofermentans ISDg 5742312 YP_001561001.1 CDS Cphy_3915 NC_010001.1 4811136 4811726 R SMART: guanylate kinase/L-type calcium channel region; KEGG: cpr:CPR_2447 guanylate kinase-like protein; guanylate kinase complement(4811136..4811726) Clostridium phytofermentans ISDg 5742313 YP_001561002.1 CDS Cphy_3916 NC_010001.1 4811719 4813158 R PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: amt:Amet_0081 Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase major region complement(4811719..4813158) Clostridium phytofermentans ISDg 5742314 YP_001561003.1 CDS Cphy_3917 NC_010001.1 4813411 4814055 D KEGG: bld:BLi03141 similar to proteins; RBL00993; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 4813411..4814055 Clostridium phytofermentans ISDg 5742048 YP_001561004.1 CDS Cphy_3918 NC_010001.1 4814152 4814424 D KEGG: mgr:MGG_04749 predicted protein; hypothetical protein 4814152..4814424 Clostridium phytofermentans ISDg 5742042 YP_001561005.1 CDS Cphy_3919 NC_010001.1 4814554 4814865 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: sat:SYN_00045 thioredoxin; thioredoxin 4814554..4814865 Clostridium phytofermentans ISDg 5742043 YP_001561006.1 CDS Cphy_3920 NC_010001.1 4814910 4816214 R PFAM: protein of unknown function UPF0118; KEGG: amt:Amet_4632 protein of unknown function UPF0118; hypothetical protein complement(4814910..4816214) Clostridium phytofermentans ISDg 5742044 YP_001561007.1 CDS Cphy_3921 NC_010001.1 4817058 4818356 R PFAM: UMUC domain protein DNA-repair protein; KEGG: dsy:DSY4185 hypothetical protein; DNA-directed DNA polymerase complement(4817058..4818356) Clostridium phytofermentans ISDg 5742047 YP_001561008.1 CDS Cphy_3922 NC_010001.1 4818485 4819669 R TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: ckl:CKL_1659 predicted transposase; IS605 family transposase OrfB complement(4818485..4819669) Clostridium phytofermentans ISDg 5744698 YP_001561009.1 CDS Cphy_3923 NC_010001.1 4819905 4820171 R hypothetical protein complement(4819905..4820171) Clostridium phytofermentans ISDg 5744699 YP_001561010.1 CDS Cphy_3924 NC_010001.1 4820802 4821464 D PFAM: protein of unknown function DUF159; KEGG: csc:Csac_0196 protein of unknown function DUF159; hypothetical protein 4820802..4821464 Clostridium phytofermentans ISDg 5744700 YP_001561011.1 CDS Cphy_3925 NC_010001.1 4821675 4824293 D PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase_; KEGG: cth:Cthe_0423 iron-containing alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 4821675..4824293 Clostridium phytofermentans ISDg 5744701 YP_001561012.1 CDS Cphy_3926 NC_010001.1 4824573 4825388 R PFAM: ABC transporter related; KEGG: bay:RBAM_009350 YhcH; ABC transporter complement(4824573..4825388) Clostridium phytofermentans ISDg 5744702 YP_001561013.1 CDS Cphy_3927 NC_010001.1 4825740 4826486 R PFAM: aminoglycoside phosphotransferase; KEGG: cth:Cthe_0424 aminoglycoside phosphotransferase; Mn2+-dependent serine/threonine protein kinase complement(4825740..4826486) Clostridium phytofermentans ISDg 5744703 YP_001561014.1 CDS araD NC_010001.1 4826781 4827503 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 4826781..4827503 Clostridium phytofermentans ISDg 5744704 YP_001561015.1 CDS Cphy_3929 NC_010001.1 4827725 4829275 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: tte:TTE0925 D-alanyl-D-alanine carboxypeptidase; Serine-type D-Ala-D-Ala carboxypeptidase 4827725..4829275 Clostridium phytofermentans ISDg 5744679 YP_001561016.1 CDS Cphy_3930 NC_010001.1 4829441 4830136 R hypothetical protein complement(4829441..4830136) Clostridium phytofermentans ISDg 5744680 YP_001561017.1 CDS Cphy_3931 NC_010001.1 4830637 4831512 R hypothetical protein complement(4830637..4831512) Clostridium phytofermentans ISDg 5744682 YP_001561018.1 CDS Cphy_3932 NC_010001.1 4831633 4832715 R PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: cbe:Cbei_2514 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(4831633..4832715) Clostridium phytofermentans ISDg 5744683 YP_001561019.1 CDS Cphy_3933 NC_010001.1 4832859 4833371 R KEGG: cbf:CLI_3882 hypothetical protein; hypothetical protein complement(4832859..4833371) Clostridium phytofermentans ISDg 5744684 YP_001561020.1 CDS Cphy_3934 NC_010001.1 4833440 4834327 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cbh:CLC_3637 stage 0 sporulation protein J; parB-like partition protein complement(4833440..4834327) Clostridium phytofermentans ISDg 5744685 YP_001561021.1 CDS Cphy_3935 NC_010001.1 4834330 4835184 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: tte:TTE2791 ATPases involved in chromosome partitioning; cobyrinic acid ac-diamide synthase complement(4834330..4835184) Clostridium phytofermentans ISDg 5744686 YP_001561022.1 CDS Cphy_3936 NC_010001.1 4836601 4837242 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: cth:Cthe_1267 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(4836601..4837242) Clostridium phytofermentans ISDg 5744687 YP_001561023.1 CDS Cphy_3937 NC_010001.1 4837246 4838346 R PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: cth:Cthe_1268 histidine kinase; histidine kinase complement(4837246..4838346) Clostridium phytofermentans ISDg 5744688 YP_001561024.1 CDS Cphy_3938 NC_010001.1 4838447 4838935 R PFAM: GCN5-related N-acetyltransferase; KEGG: tpt:Tpet_1016 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(4838447..4838935) Clostridium phytofermentans ISDg 5744689 YP_001561025.1 CDS Cphy_3939 NC_010001.1 4839020 4839748 R TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: cth:Cthe_2363 methyltransferase GidB; methyltransferase GidB complement(4839020..4839748) Clostridium phytofermentans ISDg 5744690 YP_001561026.1 CDS Cphy_3940 NC_010001.1 4840022 4841905 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(4840022..4841905) Clostridium phytofermentans ISDg 5744691 YP_001561027.1 CDS Cphy_3941 NC_010001.1 4841935 4843311 R TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: ctc:CTC00098 thiophene and furan oxidation protein thdF; tRNA modification GTPase TrmE complement(4841935..4843311) Clostridium phytofermentans ISDg 5744692 YP_001561028.1 CDS Cphy_3942 NC_010001.1 4843609 4844439 R PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: cbh:CLC_3643 jag protein; single-stranded nucleic acid binding R3H domain-containing protein complement(4843609..4844439) Clostridium phytofermentans ISDg 5744693 YP_001561029.1 CDS Cphy_3943 NC_010001.1 4844439 4845767 R PFAM: 60 kDa inner membrane insertion protein; KEGG: ckl:CKL_3476 hypothetical protein; hypothetical protein complement(4844439..4845767) Clostridium phytofermentans ISDg 5744694 YP_001561030.1 CDS Cphy_3944 NC_010001.1 4845820 4846032 R PFAM: protein of unknown function DUF37; KEGG: sth:STH3339 alpha-hemolysin; hypothetical protein complement(4845820..4846032) Clostridium phytofermentans ISDg 5744695 YP_001561031.1 CDS rnpA NC_010001.1 4846164 4846514 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(4846164..4846514) Clostridium phytofermentans ISDg 5744696 YP_001561032.1 CDS rpmH NC_010001.1 4846747 4846881 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(4846747..4846881) Clostridium phytofermentans ISDg 5744697 Cphy_R0001 tRNA Cphy_R0001 NC_010001.1 15146 15233 D tRNA-Ser 15146..15233 Clostridium phytofermentans ISDg 5741489 Cphy_R0005 tRNA Cphy_R0005 NC_010001.1 20955 21031 D tRNA-Asp 20955..21031 Clostridium phytofermentans ISDg 5744925 Cphy_R0006 tRNA Cphy_R0006 NC_010001.1 21063 21135 D tRNA-Val 21063..21135 Clostridium phytofermentans ISDg 5744926 Cphy_R0007 tRNA Cphy_R0007 NC_010001.1 21189 21261 D tRNA-Thr 21189..21261 Clostridium phytofermentans ISDg 5744927 Cphy_R0008 tRNA Cphy_R0008 NC_010001.1 21271 21352 D tRNA-Tyr 21271..21352 Clostridium phytofermentans ISDg 5744928 Cphy_R0009 tRNA Cphy_R0009 NC_010001.1 21414 21487 D tRNA-Met 21414..21487 Clostridium phytofermentans ISDg 5744929 Cphy_R0010 tRNA Cphy_R0010 NC_010001.1 21533 21605 D tRNA-Phe 21533..21605 Clostridium phytofermentans ISDg 5744930 Cphy_R0011 tRNA Cphy_R0011 NC_010001.1 21653 21728 D tRNA-Lys 21653..21728 Clostridium phytofermentans ISDg 5744931 Cphy_R0015 tRNA Cphy_R0015 NC_010001.1 77838 77911 D tRNA-Ile 77838..77911 Clostridium phytofermentans ISDg 5744978 Cphy_R0016 tRNA Cphy_R0016 NC_010001.1 77967 78039 D tRNA-Ala 77967..78039 Clostridium phytofermentans ISDg 5744979 Cphy_R0018 tRNA Cphy_R0018 NC_010001.1 81292 81363 D tRNA-Asn 81292..81363 Clostridium phytofermentans ISDg 5744981 Cphy_R0019 tRNA Cphy_R0019 NC_010001.1 81410 81480 D tRNA-Cys 81410..81480 Clostridium phytofermentans ISDg 5744982 Cphy_R0020 tRNA Cphy_R0020 NC_010001.1 179651 179724 D tRNA-Met 179651..179724 Clostridium phytofermentans ISDg 5744288 Cphy_R0021 tRNA Cphy_R0021 NC_010001.1 187268 187349 D tRNA-Tyr 187268..187349 Clostridium phytofermentans ISDg 5744294 Cphy_R0022 tRNA Cphy_R0022 NC_010001.1 187354 187439 D tRNA-Leu 187354..187439 Clostridium phytofermentans ISDg 5744295 Cphy_R0023 tRNA Cphy_R0023 NC_010001.1 187556 187626 D tRNA-Gly 187556..187626 Clostridium phytofermentans ISDg 5744296 Cphy_R0024 tRNA Cphy_R0024 NC_010001.1 445426 445511 D tRNA-Ser 445426..445511 Clostridium phytofermentans ISDg 5742200 Cphy_R0025 tRNA Cphy_R0025 NC_010001.1 445606 445694 D tRNA-Ser 445606..445694 Clostridium phytofermentans ISDg 5742201 Cphy_R0028 tRNA Cphy_R0028 NC_010001.1 447973 448045 D tRNA-Ala 447973..448045 Clostridium phytofermentans ISDg 5742204 Cphy_R0030 tRNA Cphy_R0030 NC_010001.1 451301 451372 D tRNA-Asn 451301..451372 Clostridium phytofermentans ISDg 5742206 Cphy_R0031 tRNA Cphy_R0031 NC_010001.1 451454 451525 D tRNA-Glu 451454..451525 Clostridium phytofermentans ISDg 5742207 Cphy_R0032 tRNA Cphy_R0032 NC_010001.1 451645 451717 D tRNA-Thr 451645..451717 Clostridium phytofermentans ISDg 5742208 Cphy_R0033 tRNA Cphy_R0033 NC_010001.1 451746 451822 D tRNA-Met 451746..451822 Clostridium phytofermentans ISDg 5742209 Cphy_R0034 tRNA Cphy_R0034 NC_010001.1 451868 451941 D tRNA-Asp 451868..451941 Clostridium phytofermentans ISDg 5742210 Cphy_R0035 tRNA Cphy_R0035 NC_010001.1 452017 452089 D tRNA-Val 452017..452089 Clostridium phytofermentans ISDg 5742211 Cphy_R0036 tRNA Cphy_R0036 NC_010001.1 452107 452192 D tRNA-Leu 452107..452192 Clostridium phytofermentans ISDg 5742212 Cphy_R0037 tRNA Cphy_R0037 NC_010001.1 452241 452314 D tRNA-Arg 452241..452314 Clostridium phytofermentans ISDg 5742213 Cphy_R0038 tRNA Cphy_R0038 NC_010001.1 471589 471663 D tRNA-Pro 471589..471663 Clostridium phytofermentans ISDg 5742231 Cphy_R0039 tRNA Cphy_R0039 NC_010001.1 471684 471754 D tRNA-Gly 471684..471754 Clostridium phytofermentans ISDg 5742232 Cphy_R0040 tRNA Cphy_R0040 NC_010001.1 471791 471864 D tRNA-Arg 471791..471864 Clostridium phytofermentans ISDg 5742233 Cphy_R0041 tRNA Cphy_R0041 NC_010001.1 471894 471970 D tRNA-His 471894..471970 Clostridium phytofermentans ISDg 5742234 Cphy_R0042 tRNA Cphy_R0042 NC_010001.1 472023 472094 D tRNA-Gln 472023..472094 Clostridium phytofermentans ISDg 5742235 Cphy_R0043 tRNA Cphy_R0043 NC_010001.1 472117 472189 D tRNA-Lys 472117..472189 Clostridium phytofermentans ISDg 5742236 Cphy_R0044 tRNA Cphy_R0044 NC_010001.1 472247 472326 D tRNA-Leu 472247..472326 Clostridium phytofermentans ISDg 5742237 Cphy_R0045 tRNA Cphy_R0045 NC_010001.1 472399 472473 D tRNA-Pro 472399..472473 Clostridium phytofermentans ISDg 5742238 Cphy_R0049 tRNA Cphy_R0049 NC_010001.1 985291 985363 D tRNA-Val 985291..985363 Clostridium phytofermentans ISDg 5743879 Cphy_R0050 tRNA Cphy_R0050 NC_010001.1 985387 985460 D tRNA-Met 985387..985460 Clostridium phytofermentans ISDg 5743880 Cphy_R0055 tRNA Cphy_R0055 NC_010001.1 1559989 1560058 D tRNA-OTHER 1559989..1560058 Clostridium phytofermentans ISDg 5744841 Cphy_R0056 tRNA Cphy_R0056 NC_010001.1 2427526 2427611 D tRNA-Ser 2427526..2427611 Clostridium phytofermentans ISDg 5744646 Cphy_R0059 tRNA Cphy_R0059 NC_010001.1 3202126 3202200 R tRNA-Glu complement(3202126..3202200) Clostridium phytofermentans ISDg 5742784 Cphy_R0060 tRNA Cphy_R0060 NC_010001.1 3202270 3202341 R tRNA-Glu complement(3202270..3202341) Clostridium phytofermentans ISDg 5742785 Cphy_R0062 tRNA Cphy_R0062 NC_010001.1 3416461 3416543 D tRNA-Leu 3416461..3416543 Clostridium phytofermentans ISDg 5742120 Cphy_R0063 tRNA Cphy_R0063 NC_010001.1 3478584 3478655 R tRNA-Glu complement(3478584..3478655) Clostridium phytofermentans ISDg 5742161 Cphy_R0068 tRNA Cphy_R0068 NC_010001.1 3497390 3497462 R tRNA-Ala complement(3497390..3497462) Clostridium phytofermentans ISDg 5742172 Cphy_R0069 tRNA Cphy_R0069 NC_010001.1 3497516 3497589 R tRNA-Ile complement(3497516..3497589) Clostridium phytofermentans ISDg 5742173 Cphy_R0073 tRNA Cphy_R0073 NC_010001.1 3598410 3598482 D tRNA-Arg 3598410..3598482 Clostridium phytofermentans ISDg 5743990 Cphy_R0074 tRNA Cphy_R0074 NC_010001.1 3638789 3638868 R tRNA-OTHER complement(3638789..3638868) Clostridium phytofermentans ISDg 5744036 Cphy_R0075 tRNA Cphy_R0075 NC_010001.1 3843833 3843904 R tRNA-Gly complement(3843833..3843904) Clostridium phytofermentans ISDg 5743235 Cphy_R0078 tRNA Cphy_R0078 NC_010001.1 3876726 3876800 D tRNA-Gly 3876726..3876800 Clostridium phytofermentans ISDg 5743261 Cphy_R0079 tRNA Cphy_R0079 NC_010001.1 3959496 3959567 R tRNA-Gly complement(3959496..3959567) Clostridium phytofermentans ISDg 5742033 Cphy_R0080 tRNA Cphy_R0080 NC_010001.1 4044095 4044167 R tRNA-Thr complement(4044095..4044167) Clostridium phytofermentans ISDg 5741600 Cphy_R0082 tRNA Cphy_R0082 NC_010001.1 4069808 4069880 R tRNA-Thr complement(4069808..4069880) Clostridium phytofermentans ISDg 5741623 Cphy_R0083 tRNA Cphy_R0083 NC_010001.1 4069917 4069990 R tRNA-Pro complement(4069917..4069990) Clostridium phytofermentans ISDg 5741624 Cphy_R0094 tRNA Cphy_R0094 NC_010001.1 4248676 4248748 R tRNA-Trp complement(4248676..4248748) Clostridium phytofermentans ISDg 5743565 Cphy_R0098 tRNA Cphy_R0098 NC_010001.1 4424779 4424850 R tRNA-Gln complement(4424779..4424850) Clostridium phytofermentans ISDg 5742987 Cphy_R0100 tRNA Cphy_R0100 NC_010001.1 4566018 4566102 R tRNA-Leu complement(4566018..4566102) Clostridium phytofermentans ISDg 5742911 Cphy_R0101 tRNA Cphy_R0101 NC_010001.1 4568709 4568792 R tRNA-Leu complement(4568709..4568792) Clostridium phytofermentans ISDg 5742914 Cphy_R0105 tRNA Cphy_R0105 NC_010001.1 4736356 4736426 D tRNA-Gly 4736356..4736426 Clostridium phytofermentans ISDg 5744814 Cphy_R0107 tRNA Cphy_R0107 NC_010001.1 4816551 4816623 D tRNA-Lys 4816551..4816623 Clostridium phytofermentans ISDg 5742045 Cphy_R0108 tRNA Cphy_R0108 NC_010001.1 4816921 4816996 D tRNA-Lys 4816921..4816996 Clostridium phytofermentans ISDg 5742046 Cphy_R0109 tRNA Cphy_R0109 NC_010001.1 4830532 4830603 R tRNA-Arg complement(4830532..4830603) Clostridium phytofermentans ISDg 5744681 Cphy_R0002 rRNA Cphy_R0002 NC_010001.1 15754 17276 D 16S ribosomal RNA 15754..17276 Clostridium phytofermentans ISDg 5741490 Cphy_R0003 rRNA Cphy_R0003 NC_010001.1 17450 17566 D 5S ribosomal RNA 17450..17566 Clostridium phytofermentans ISDg 5741491 Cphy_R0004 rRNA Cphy_R0004 NC_010001.1 17924 20823 D 23S ribosomal RNA 17924..20823 Clostridium phytofermentans ISDg 5744924 Cphy_R0013 rRNA Cphy_R0013 NC_010001.1 76019 77542 D 16S ribosomal RNA 76019..77542 Clostridium phytofermentans ISDg 5744976 Cphy_R0014 rRNA Cphy_R0014 NC_010001.1 77715 77831 D 5S ribosomal RNA 77715..77831 Clostridium phytofermentans ISDg 5744977 Cphy_R0017 rRNA Cphy_R0017 NC_010001.1 78327 81226 D 23S ribosomal RNA 78327..81226 Clostridium phytofermentans ISDg 5744980 Cphy_R0026 rRNA Cphy_R0026 NC_010001.1 446242 447765 D 16S ribosomal RNA 446242..447765 Clostridium phytofermentans ISDg 5742202 Cphy_R0027 rRNA Cphy_R0027 NC_010001.1 447851 447967 D 5S ribosomal RNA 447851..447967 Clostridium phytofermentans ISDg 5742203 Cphy_R0029 rRNA Cphy_R0029 NC_010001.1 448333 451232 D 23S ribosomal RNA 448333..451232 Clostridium phytofermentans ISDg 5742205 Cphy_R0064 rRNA Cphy_R0064 NC_010001.1 3478737 3481636 R 23S ribosomal RNA complement(3478737..3481636) Clostridium phytofermentans ISDg 5742162 Cphy_R0065 rRNA Cphy_R0065 NC_010001.1 3481982 3482098 R 5S ribosomal RNA complement(3481982..3482098) Clostridium phytofermentans ISDg 5742163 Cphy_R0066 rRNA Cphy_R0066 NC_010001.1 3482237 3483759 R 16S ribosomal RNA complement(3482237..3483759) Clostridium phytofermentans ISDg 5742164 Cphy_R0067 rRNA Cphy_R0067 NC_010001.1 3494169 3497068 R 23S ribosomal RNA complement(3494169..3497068) Clostridium phytofermentans ISDg 5742171 Cphy_R0070 rRNA Cphy_R0070 NC_010001.1 3497596 3497712 R 5S ribosomal RNA complement(3497596..3497712) Clostridium phytofermentans ISDg 5745122 Cphy_R0071 rRNA Cphy_R0071 NC_010001.1 3497853 3499375 R 16S ribosomal RNA complement(3497853..3499375) Clostridium phytofermentans ISDg 5745123 Cphy_R0084 rRNA Cphy_R0084 NC_010001.1 4134599 4137498 R 23S ribosomal RNA complement(4134599..4137498) Clostridium phytofermentans ISDg 5743662 Cphy_R0085 rRNA Cphy_R0085 NC_010001.1 4137971 4138087 R 5S ribosomal RNA complement(4137971..4138087) Clostridium phytofermentans ISDg 5743663 Cphy_R0086 rRNA Cphy_R0086 NC_010001.1 4138173 4139695 R 16S ribosomal RNA complement(4138173..4139695) Clostridium phytofermentans ISDg 5743664 Cphy_R0087 rRNA Cphy_R0087 NC_010001.1 4175341 4178240 R 23S ribosomal RNA complement(4175341..4178240) Clostridium phytofermentans ISDg 5743688 Cphy_R0088 rRNA Cphy_R0088 NC_010001.1 4178722 4178838 R 5S ribosomal RNA complement(4178722..4178838) Clostridium phytofermentans ISDg 5743689 Cphy_R0089 rRNA Cphy_R0089 NC_010001.1 4178979 4180501 R 16S ribosomal RNA complement(4178979..4180501) Clostridium phytofermentans ISDg 5743690 Cphy_R0090 rRNA Cphy_R0090 NC_010001.1 4181357 4184256 R 23S ribosomal RNA complement(4181357..4184256) Clostridium phytofermentans ISDg 5743691 Cphy_R0091 rRNA Cphy_R0091 NC_010001.1 4184738 4184854 R 5S ribosomal RNA complement(4184738..4184854) Clostridium phytofermentans ISDg 5743692 Cphy_R0092 rRNA Cphy_R0092 NC_010001.1 4184940 4186462 R 16S ribosomal RNA complement(4184940..4186462) Clostridium phytofermentans ISDg 5743693 Cphy_R0093 rRNA Cphy_R0093 NC_010001.1 4214603 4214782 R 6S ribosomal RNA complement(4214603..4214782) Clostridium phytofermentans ISDg 5743539