-- dump date 20140619_045011 -- class Genbank::CDS -- table cds_note -- id note YP_001557131.1 KEGG: cbf:CLI_0001 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase YP_001557132.1 KEGG: cth:Cthe_2372 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain YP_001557133.1 PFAM: RNA-binding S4 domain protein; KEGG: art:Arth_1328 RNA-binding S4 domain protein YP_001557134.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: cpr:CPR_0004 DNA replication and repair protein RecF YP_001557135.1 KEGG: cno:NT01CX_0862 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II YP_001557136.1 KEGG: amt:Amet_0007 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_001557137.1 KEGG: cth:Cthe_3090 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region YP_001557138.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: amt:Amet_3412 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit YP_001557139.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: csc:Csac_2255 transcriptional regulator, BadM/Rrf2 family YP_001557140.1 KEGG: cbe:Cbei_0766 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001557141.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cbe:Cbei_4356 cysteine synthase A YP_001557142.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_001557143.1 KEGG: cbe:Cbei_4645 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase YP_001557144.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: ctc:CTC01332 transketolase YP_001557145.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amt:Amet_1506 two component transcriptional regulator, winged helix family YP_001557146.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: amt:Amet_1507 integral membrane sensor signal transduction histidine kinase YP_001557147.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cpe:CPE1525 probable ABC transporter YP_001557148.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_2793 ABC transporter related YP_001557150.1 PFAM: RelA/SpoT domain protein; KEGG: lin:lin0794 hypothetical protein YP_001557151.1 PFAM: RNA binding S1 domain protein; KEGG: cno:NT01CX_1373 RpsA YP_001557152.1 PFAM: NUDIX hydrolase; KEGG: cth:Cthe_3126 NUDIX hydrolase YP_001557153.1 KEGG: rci:RCIX1087 hypothetical protein YP_001557154.1 catalyzes the removal of amino acids from the N termini of peptides YP_001557155.1 TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; tRNA synthetase class I (M); KEGG: cno:NT01CX_0697 methionyl-tRNA synthetase YP_001557156.1 KEGG: tte:TTE0043 hypothetical protein YP_001557157.1 KEGG: ckl:CKL_3823 hypothetical protein YP_001557158.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: btl:BALH_3033 possible UbiE/COQ5 methyltransferase family YP_001557160.1 KEGG: cth:Cthe_1340 hypothetical protein YP_001557161.1 PFAM: type II secretion system protein E; KEGG: cth:Cthe_1339 type II secretion system protein E YP_001557162.1 KEGG: cth:Cthe_1338 Flp pilus assembly protein TadB-like protein YP_001557163.1 KEGG: cth:Cthe_1337 type II secretion system protein YP_001557165.1 KEGG: cth:Cthe_1829 chromosome segregation ATPases-like protein YP_001557167.1 PFAM: peptidase A24A prepilin type IV; KEGG: cth:Cthe_1335 peptidase A24A, prepilin type IV YP_001557169.1 PFAM: Forkhead-associated protein; KEGG: cth:Cthe_1334 FHA domain containing protein YP_001557170.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: cbf:CLI_2834 glycerol kinase YP_001557171.1 PFAM: Rhomboid family protein; KEGG: ctc:CTC00530 conserved membrane protein (rhomboid family) YP_001557173.1 KEGG: cth:Cthe_2520 hypothetical protein YP_001557174.1 KEGG: amt:Amet_1444 hypothetical protein YP_001557175.1 KEGG: cth:Cthe_2144 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_001557176.1 PFAM: conserved hypothetical protein; KEGG: cbe:Cbei_4950 conserved hypothetical protein 103 YP_001557177.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001557178.1 KEGG: cho:Chro.30409 hypothetical protein YP_001557179.1 TIGRFAM: sporulation protein YyaC; PFAM: protein of unknown function DUF1256; KEGG: cth:Cthe_2165 protein of unknown function DUF1256 YP_001557180.1 PFAM: Peptidoglycan-binding LysM; KEGG: rca:Rcas_0063 peptidoglycan-binding LysM YP_001557182.1 KEGG: cth:Cthe_2712 hypothetical protein YP_001557183.1 TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: tde:TDE0157 KHG/KDPG family aldolase/carbohydrate kinase, PfkB family YP_001557187.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: cbh:CLC_2728 xanthine dehydrogenase family protein, molybdopterin-binding subunit YP_001557188.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: cbf:CLI_2901 xanthine dehydrogenase family protein, FAD-binding subunit YP_001557189.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: cbf:CLI_0333 xanthine dehydrogenase family protein, iron-sulfur-binding subunit YP_001557191.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_001557192.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: bvu:BVU_1472 histidinol phosphatase and related hydrolase of the PHP family YP_001557193.1 PFAM: helix-turn-helix domain protein; KEGG: cbe:Cbei_3749 transcriptional regulator, XRE family YP_001557194.1 PFAM: helix-turn-helix domain protein; KEGG: cpe:CPE0727 hypothetical protein YP_001557196.1 KEGG: tva:TVAG_032240 flocculin, PROSITE: SER_RICH THR_RICH YP_001557197.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: syn:slr0891 N-acetylmuramoyl-L-alanine amidase YP_001557198.1 KEGG: cth:Cthe_0079 hypothetical protein YP_001557199.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: cbe:Cbei_0369 peptidase U62, modulator of DNA gyrase YP_001557200.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: cbe:Cbei_0370 peptidase U62, modulator of DNA gyrase YP_001557201.1 KEGG: sth:STH2880 hypothetical protein YP_001557202.1 PFAM: regulatory protein GntR HTH; KEGG: cac:CAC0599 transcriptional regulator, GntR family YP_001557204.1 KEGG: efa:EF0300 hypothetical protein YP_001557205.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bay:RBAM_030540 multidrug ABC transporter, ATPase component YP_001557206.1 PFAM: ABC-2 type transporter; KEGG: spa:M6_Spy0585 SagH YP_001557207.1 PFAM: ABC-2 type transporter; KEGG: tte:TTE2529 ABC-type multidrug transport system, permease component YP_001557208.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: bld:BLi04006 YxjM YP_001557209.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bca:BCE_1863 DNA-binding response regulator, LuxR family YP_001557210.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cbe:Cbei_2490 rubrerythrin YP_001557211.1 PFAM: protein of unknown function DUF1540; KEGG: cbe:Cbei_2324 protein of unknown function DUF1540 YP_001557212.1 PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin YP_001557213.1 KEGG: ppe:PEPE_1302 D-alanine-D-alanine ligase related ATP-grasp enzyme; TIGRFAM: D-alanine--D-alanine ligase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; RimK domain protein ATP-grasp YP_001557215.1 KEGG: cbf:CLI_1824 hypothetical protein YP_001557216.1 TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: cbe:Cbei_4110 hydrogenase, Fe-only YP_001557217.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: cbe:Cbei_4111 NADH dehydrogenase (quinone) YP_001557218.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: cbe:Cbei_4112 NADH dehydrogenase (ubiquinone), 24 kDa subunit YP_001557219.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; hydrogenase large subunit domain protein; KEGG: cbe:Cbei_0327 ferredoxin hydrogenase YP_001557220.1 PFAM: Stage II sporulation E family protein; KEGG: cth:Cthe_0427 serine phosphatase YP_001557221.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; hydrogenase large subunit domain protein; Fe-S cluster domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: tte:TTE0697 ferredoxin 2 YP_001557222.1 KEGG: cth:Cthe_0425 hypothetical protein YP_001557223.1 PFAM: DegV family protein; KEGG: oih:OB2518 hypothetical protein YP_001557224.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001557225.1 PFAM: protein of unknown function DUF988; KEGG: cbf:CLI_3316 hypothetical protein YP_001557226.1 PFAM: helix-turn-helix domain protein; KEGG: lsl:LSL_1338 DNA-binding protein YP_001557227.1 PFAM: regulatory protein MerR; KEGG: cdf:CD1016 MerR-family transcriptional regulator YP_001557228.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD2818 ABC transporter, ATP-binding/permease YP_001557229.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD2817 ABC transporter, ATP-binding/permease YP_001557230.1 KEGG: cbe:Cbei_4185 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001557231.1 PFAM: metallophosphoesterase; KEGG: cth:Cthe_2411 metallophosphoesterase YP_001557232.1 KEGG: lga:LGAS_1449 DNA repair ATPase YP_001557233.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate YP_001557234.1 acts to load the DnaB helicase onto the initiation site during DNA replication YP_001557235.1 TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: tte:TTE2692 hypothetical protein YP_001557236.1 TIGRFAM: UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: ckl:CKL_0143 MurC YP_001557237.1 PFAM: SpoVG family protein; KEGG: cbf:CLI_3766 stage V sporulation protein G YP_001557238.1 PFAM: polysaccharide deacetylase; KEGG: lwe:lwe0378 polysaccharide deacetylase family protein YP_001557239.1 PFAM: peptidyl-tRNA hydrolase; KEGG: cac:CAC3217 stage V sporulation protein C, peptidyl-tRNA hydrolase YP_001557240.1 KEGG: tte:TTE2565 Transcription-repair coupling factor - superfamily II helicase; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001557241.1 KEGG: cdf:CD3500 foldase lipoprotein (late stage protein export lipoprotein) YP_001557242.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0410 ABC-type multidrug transport system, ATPase component YP_001557243.1 PFAM: ABC-2 type transporter; KEGG: tte:TTE0411 ABC-type Na+ efflux pump, permease component YP_001557244.1 PFAM: regulatory protein ArsR; KEGG: fno:Fnod_1613 regulatory protein ArsR YP_001557245.1 PFAM: regulatory protein GntR HTH; TrkA-C domain protein; KEGG: cbe:Cbei_2872 TrkA-C domain protein YP_001557246.1 KEGG: cbe:Cbei_2871 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase YP_001557247.1 PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cbe:Cbei_2870 substrate-binding region of ABC-type glycine betaine transport system YP_001557248.1 PFAM: Heavy metal transport/detoxification protein; KEGG: fnu:FN0259 zinc-transporting ATPase YP_001557249.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: btk:BT9727_0506 cation-transporting ATPase, P-type YP_001557250.1 PFAM: NUDIX hydrolase; KEGG: sgo:SGO_0168 hydrolase, NUDIX family YP_001557251.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: lac:LBA1598 glycolate oxidase YP_001557252.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_5936 xylose isomerase domain protein TIM barrel YP_001557253.1 PFAM: sulfatase; KEGG: cpf:CPF_1807 hypothetical protein YP_001557254.1 KEGG: cno:NT01CX_2290 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_001557255.1 TIGRFAM: transcriptional regulator, AbrB family; stage V sporulation protein T; PFAM: SpoVT/AbrB domain protein; KEGG: cpe:CPE2482 stage V sprulation protein T YP_001557256.1 PFAM: amino acid permease-associated region; KEGG: sak:SAK_1604 permease, amino acid-polyamine-organocation (APC) family YP_001557257.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: cth:Cthe_1854 methylated-DNA--protein-cysteine methyltransferase YP_001557258.1 PFAM: Patatin; KEGG: aha:AHA_2929 patatin YP_001557259.1 KEGG: dsy:DSY1218 hypothetical protein YP_001557260.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: chy:CHY_0204 tetrapyrrole methylase family protein/MazG family protein YP_001557261.1 PFAM: histone family protein DNA-binding protein; KEGG: tte:TTE2453 Bacterial nucleoid DNA-binding protein YP_001557262.1 PFAM: RNA-binding S4 domain protein; KEGG: cpf:CPF_2801 S4 domain protein YP_001557263.1 TIGRFAM: sporulation protein YabP; PFAM: YabP family protein; KEGG: cth:Cthe_2659 YabP-like protein YP_001557264.1 KEGG: amt:Amet_0170 spore cortex biosynthesis protein YabQ YP_001557265.1 PFAM: Septum formation initiator YP_001557266.1 KEGG: cth:Cthe_2681 serine phosphatase; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein YP_001557267.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: ckl:CKL_0170 TilS YP_001557268.1 KEGG: tte:TTE2394 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_001557269.1 KEGG: csc:Csac_1210 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001557270.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbh:CLC_1033 acetyltransferase, GNAT family YP_001557271.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ctc:CTC00992 magnesium-protoporphyrin IX monomethyl ester oxidative cyclase YP_001557272.1 KEGG: cth:Cthe_1283 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_001557273.1 KEGG: cth:Cthe_0996 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_001557275.1 PFAM: VanW family protein; KEGG: csc:Csac_1552 VanW family protein YP_001557276.1 PFAM: AIR synthase related protein domain protein; KEGG: tte:TTE1537 hydrogenase maturation factor YP_001557277.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: csc:Csac_1961 transcriptional regulator, AsnC family YP_001557278.1 PFAM: aminotransferase class I and II; KEGG: cth:Cthe_0363 aminotransferase, class I and II YP_001557279.1 PFAM: CheC domain protein; KEGG: csc:Csac_1295 CheC domain protein YP_001557280.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cth:Cthe_0127 RNA methyltransferase, TrmH family, group 2 YP_001557281.1 KEGG: cth:Cthe_1014 MutS2 family protein; TIGRFAM: MutS2 family protein; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein YP_001557282.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1288 two component transcriptional regulator, winged helix family YP_001557283.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE2569 sensory transduction histidine kinase YP_001557284.1 PFAM: PDZ/DHR/GLGF domain protein; KEGG: ckl:CKL_2696 predicted protease YP_001557285.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbh:CLC_0312 acetyltransferase, GNAT family YP_001557286.1 KEGG: sat:SYN_02192 HD-superfamily hydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001557287.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: amt:Amet_4060 RNA methyltransferase, TrmA family YP_001557288.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cth:Cthe_1389 metal dependent phosphohydrolase YP_001557289.1 KEGG: bld:BLi04142 YkgB YP_001557290.1 KEGG: dsy:DSY1015 hypothetical protein YP_001557291.1 KEGG: cbe:Cbei_2447 GCN5-related N-acetyltransferase YP_001557292.1 PFAM: beta-lactamase domain protein; KEGG: cdf:CD1802 hydrolase YP_001557293.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: ctc:CTC01432 transcriptional regulatory protein YP_001557294.1 PFAM: transglutaminase domain protein; KEGG: amt:Amet_3922 hypothetical protein YP_001557295.1 PFAM: helix-turn-helix domain protein; KEGG: bay:RBAM_012510 Xre YP_001557296.1 PFAM: DNA repair protein RadC; KEGG: cpr:CPR_2111 DNA repair protein, RadC family YP_001557297.1 TIGRFAM: diguanylate cyclase; PFAM: helix-turn-helix- domain containing protein AraC type; GGDEF domain containing protein; KEGG: cbe:Cbei_3076 diguanylate cyclase YP_001557298.1 PFAM: helix-turn-helix domain protein; KEGG: spd:SPD_1745 transcriptional regulator PlcR YP_001557299.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sun:SUN_0557 hypothetical protein YP_001557300.1 KEGG: llc:LACR_1589 peptidase E YP_001557301.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever YP_001557302.1 PFAM: regulatory protein TetR; KEGG: cbf:CLI_2106 transcriptional regulator, TetR family YP_001557303.1 PFAM: protein of unknown function UPF0153; KEGG: cte:CT0872 hypothetical protein YP_001557304.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cdf:CD1963 hypothetical protein YP_001557305.1 PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: mla:Mlab_0303 hypothetical protein YP_001557306.1 PFAM: protein of unknown function DUF1648; KEGG: bcl:ABC3712 hypothetical protein YP_001557307.1 PFAM: aminotransferase class V; aminotransferase class I and II; KEGG: gtn:GTNG_2699 cysteine desulfhydrase YP_001557308.1 PFAM: PP-loop domain protein; KEGG: cbo:CBO0341 hypothetical protein YP_001557309.1 PFAM: Radical SAM domain protein; KEGG: mla:Mlab_0619 hypothetical protein YP_001557310.1 KEGG: cbe:Cbei_3897 hypothetical protein YP_001557311.1 PFAM: regulatory protein GntR HTH; KEGG: lre:Lreu_1332 regulatory protein GntR, HTH YP_001557312.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_1248 ABC transporter, ATP-binding protein YP_001557313.1 KEGG: cbh:CLC_1249 hypothetical protein YP_001557314.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cac:CAC3332 predicted amidohydrolase (dihydroorothase family) YP_001557315.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cbe:Cbei_0409 CMP/dCMP deaminase, zinc-binding YP_001557316.1 PFAM: beta-lactamase; KEGG: pdi:BDI_1500 beta-lactamase class C, 6-aminohexanoate-dimer hydrolase YP_001557317.1 PFAM: glycoside hydrolase family 43; KEGG: bld:BLi00864 xylan beta-1,4-xylosidase; RBL03427 YP_001557318.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: ppe:PEPE_1650 ABC-type antimicrobial peptide transport system, ATPase component YP_001557319.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: cbe:Cbei_4728 ABC transporter related YP_001557321.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: amt:Amet_4746 integral membrane sensor signal transduction histidine kinase YP_001557322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:CTC01482 transcriptional activator protein YP_001557324.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ctc:CTC01480 conserved protein, ferredoxin-type protein NapH YP_001557325.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ctc:CTC01479 hypothetical protein YP_001557326.1 KEGG: cac:CAC2610 L-fucose isomerase related protein YP_001557327.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: csc:Csac_2452 methyl-accepting chemotaxis sensory transducer YP_001557328.1 PFAM: MgtC/SapB transporter; KEGG: cbe:Cbei_2642 MgtC/SapB transporter YP_001557329.1 PFAM: glycosyl hydrolase family 88; KEGG: amt:Amet_0895 glycosyl hydrolase, family 88 YP_001557330.1 PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; KEGG: ssp:SSP1089 FKBP-type peptidyl-prolyl cis-trans isomerase YP_001557331.1 PFAM: manganese and iron superoxide dismutase; KEGG: cdf:CD1631 superoxide dismutase (Mn) YP_001557332.1 PFAM: arsenate reductase and related; KEGG: ctc:CTC01181 arsenate reductase YP_001557333.1 KEGG: cdf:CD0306 hypothetical protein YP_001557334.1 PFAM: heat shock protein DnaJ domain protein; KEGG: cbf:CLI_0254 molecular chaperone, DnaJ family YP_001557335.1 KEGG: cdf:CD0308 hypothetical protein YP_001557336.1 TIGRFAM: sporulation transcriptional regulator SpoIIID; KEGG: cth:Cthe_2618 stage III sporulation protein D, SpoIIID YP_001557337.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: cbh:CLC_0426 electron transport complex, RnfABCDGE type, C subunit YP_001557338.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: ctc:CTC01020 RnfD/NqrB YP_001557339.1 PFAM: FMN-binding domain protein; KEGG: cdf:CD1139 electron transport complex protein YP_001557340.1 TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: ctc:CTC01022 rnfE/nqrD YP_001557341.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: fnu:FN1592 Na(+)-translocating NADH-quinone reductase subunit D YP_001557342.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: cno:NT01CX_1584 polyferredoxin YP_001557344.1 catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides YP_001557346.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: pdi:BDI_3104 glycoside hydrolase family 3, candidate beta-glycosidase YP_001557347.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001557348.1 PFAM: UvrD/REP helicase; KEGG: amt:Amet_2202 UvrD/REP helicase YP_001557349.1 PFAM: protein of unknown function DUF1292; KEGG: amt:Amet_0705 protein of unknown function DUF1292 YP_001557350.1 PFAM: DEAD_2 domain protein; SMART: Helicase-like, DEXD box c2 type; helicase c2; KEGG: cth:Cthe_0289 DEAD_2 YP_001557351.1 PFAM: diacylglycerol kinase catalytic region; KEGG: tva:TVAG_429710 conserved hypothetical protein Pfam: DAGK_cat DAGK_acc YP_001557352.1 PFAM: protein of unknown function DUF885; KEGG: slo:Shew_1130 protein of unknown function DUF885 YP_001557353.1 PFAM: PfkB domain protein; KEGG: amt:Amet_1262 PfkB domain protein YP_001557354.1 KEGG: nar:Saro_1184 endo alpha-1,4 polygalactosaminidase YP_001557355.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: amt:Amet_3127 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001557357.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: cno:NT01CX_1336 alginate O-acetylation protein YP_001557358.1 KEGG: ctc:CTC00591 hypothetical protein YP_001557359.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: oih:OB0869 1-acyl-sn-glycerol-3-phosphate acetyltransferase YP_001557360.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: csc:Csac_0883 RNA polymerase, sigma 70 subunit, RpoD family YP_001557361.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001557362.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001557363.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001557364.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001557366.1 PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cdf:CD1616 signaling protein YP_001557368.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; KEGG: cth:Cthe_2619 cell shape determining protein, MreB/Mrl family YP_001557369.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: pth:PTH_2067 flagellar hook protein FlgE YP_001557370.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_2621 protein of unknown function DUF1078-like protein YP_001557371.1 KEGG: cth:Cthe_2622 hypothetical protein YP_001557372.1 KEGG: amt:Amet_0722 helicase, RecD/TraA family; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase YP_001557373.1 KEGG: bfs:BF3922 hypothetical protein YP_001557374.1 KEGG: tte:TTE0490 predicted amidophosphoribosyltransferases YP_001557375.1 KEGG: cth:Cthe_2247 regulatory protein, MerR YP_001557376.1 PFAM: RNA binding S1 domain protein; KEGG: cbh:CLC_1722 RNA-binding protein YP_001557377.1 PFAM: acyl-ACP thioesterase; KEGG: cbf:CLI_3859 acyl-ACP thioesterase family protein YP_001557378.1 PFAM: Abortive infection protein; KEGG: amt:Amet_1623 abortive infection protein YP_001557379.1 KEGG: amt:Amet_0741 hypothetical protein YP_001557380.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; KEGG: tte:TTE2220 thioredoxin reductase YP_001557381.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: cac:CAC2847 ribosome-associated protein Y (PSrp-1) YP_001557382.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: helicase domain protein; SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: csc:Csac_1325 preprotein translocase, SecA subunit YP_001557383.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: cth:Cthe_0365 peptide chain release factor 2 YP_001557384.1 PFAM: CheW domain protein; KEGG: maq:Maqu_1966 CheW protein YP_001557385.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001557386.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: cth:Cthe_0311 excinuclease ABC, A subunit YP_001557387.1 KEGG: ppd:Ppro_1070 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001557388.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dps:DP1647 flavoprotein YP_001557389.1 PFAM: von Willebrand factor type A; KEGG: cth:Cthe_3075 von Willebrand factor, type A YP_001557390.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001557391.1 KEGG: sbl:Sbal_2840 hypothetical protein YP_001557393.1 KEGG: fps:FP1566 probable modification methyltransferase YP_001557394.1 PFAM: ATP-binding region ATPase domain protein; KEGG: pfo:Pfl_4625 histidine kinase YP_001557396.1 KEGG: pfo:Pfl_4627 HNH endonuclease YP_001557399.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dsy:DSY0147 hypothetical protein YP_001557400.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: amt:Amet_3776 S-adenosyl-methyltransferase MraW YP_001557401.1 PFAM: helix-turn-helix domain protein; KEGG: mla:Mlab_0650 hypothetical protein YP_001557402.1 PFAM: regulatory protein MerR; KEGG: dsy:DSY1016 hypothetical protein YP_001557403.1 PFAM: protein of unknown function DUF1275; KEGG: lmo:lmo0450 hypothetical protein YP_001557404.1 KEGG: gur:Gura_2911 hypothetical protein YP_001557405.1 KEGG: cbe:Cbei_4038 hypothetical protein YP_001557406.1 KEGG: cac:CAC3435 hypothetical protein YP_001557407.1 PFAM: purine or other phosphorylase family 1; KEGG: sgo:SGO_0487 phosphorylase, Pnp/UDP family YP_001557409.1 KEGG: mlo:mlr7467 hypothetical protein YP_001557410.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: ljo:LJ1010 trigger factor YP_001557411.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_4017 methyl-accepting chemotaxis sensory transducer YP_001557412.1 KEGG: ctc:CTC01413 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding YP_001557413.1 PFAM: GCN5-related N-acetyltransferase; KEGG: lsl:LSL_0634 phosphinothricin N-acetyltransferase YP_001557414.1 PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 unsaturated glucuronyl hydrolase YP_001557415.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120663 permease component of ABC transporter YP_001557416.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2233 ABC transporter, permease YP_001557417.1 PFAM: extracellular solute-binding protein family 1; KEGG: rle:pRL120659 substrate-binding component of ABC transporter YP_001557418.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4458 histidine kinase internal region YP_001557419.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: tte:TTE0288 CheY-like receiver domains YP_001557421.1 PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; KEGG: cno:NT01CX_0861 DNA gyrase, A subunit YP_001557422.1 KEGG: gka:GK0005 DNA gyrase subunit B; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II YP_001557423.1 PFAM: glycosyl transferase family 2; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: bld:BLi03816 hypothetical protein YP_001557424.1 KEGG: amt:Amet_0211 hypothetical protein YP_001557425.1 PFAM: glycosyl transferase family 2; KEGG: lsa:LSA1519 teichoic acid/polysaccharide glycosyl transferase, family 2 YP_001557426.1 KEGG: lin:lin1076 highly similar to glycerol-3-phosphate cytidylyltransferase (gct), CDP-glycerol pyrophosphorylase (teichoic acid biosynthesis protein D); TIGRFAM: cytidyltransferase-related domain protein; glycerol-3-phosphate cytidylyltransferase; PFAM: cytidylyltransferase YP_001557427.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: lmf:LMOf2365_1103 teichoic acid biosynthesis domain protein YP_001557428.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: drm:Dred_3249 Orn/DAP/Arg decarboxylase 2 YP_001557429.1 PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: csc:Csac_1662 anti-sigma-28 factor, FlgM YP_001557430.1 KEGG: cth:Cthe_2245 hypothetical protein YP_001557431.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_2244 flagellar hook-associated protein FlgK YP_001557432.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: amt:Amet_0727 flagellar hook-associated protein FlgK YP_001557433.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: csc:Csac_1665 flagellar hook-associated protein 3 YP_001557434.1 PFAM: protein of unknown function DUF180; KEGG: cth:Cthe_2240 protein of unknown function DUF180 YP_001557435.1 PFAM: carbon storage regulator; KEGG: lbl:LBL_0100 carbon storage regulator protein A YP_001557437.1 PFAM: flagellar protein FlaG protein; KEGG: csc:Csac_1698 flagellar protein FlaG protein YP_001557438.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: drm:Dred_2418 flagellar hook-associated 2 domain protein YP_001557439.1 PFAM: flagellar protein FliS; KEGG: cth:Cthe_2217 flagellar protein FliS YP_001557440.1 KEGG: cth:Cthe_2216 hypothetical protein YP_001557441.1 PFAM: flagellin domain protein; KEGG: cbh:CLC_2604 flagellin YP_001557442.1 KEGG: cbe:Cbei_2712 FliB family protein YP_001557444.1 KEGG: sfu:Sfum_0268 amidophosphoribosyltransferase YP_001557445.1 PFAM: glycerol-3-phosphate responsive antiterminator; KEGG: spe:Spro_2465 glycerol-3-phosphate responsive antiterminator, GlpP YP_001557446.1 PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ctc:CTC02436 glycerol-3-phosphate dehydrogenase YP_001557447.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC02435 sarcosine oxidase alpha subunit YP_001557448.1 PFAM: protein of unknown function DUF1667; KEGG: ctc:CTC02434 hypothetical protein YP_001557449.1 PFAM: glycosyl transferase family 2; KEGG: cdf:CD3350 glycosyl transferase YP_001557450.1 PFAM: peptidase A8 signal peptidase II; KEGG: chy:CHY_1506 signal peptidase II YP_001557451.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001557452.1 KEGG: cbe:Cbei_3037 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase YP_001557453.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_001557454.1 TIGRFAM: HPr(Ser) kinase/phosphatase; PFAM: HPr serine kinase domain protein; KEGG: cth:Cthe_0110 HPr kinase YP_001557455.1 TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; ATPase BadF/BadG/BcrA/BcrD type; KEGG: cac:CAC2613 transcriptional regulators of NagC/XylR family YP_001557456.1 KEGG: tte:TTE1836 UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein YP_001557457.1 PFAM: conserved hypothetical protein; KEGG: cac:CAC0511 predicted P-loop containing kinase, similar to B.subtilis YvcJ YP_001557458.1 PFAM: protein of unknown function DUF199; KEGG: tte:TTE1821 hypothetical protein YP_001557459.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: oih:OB2465 catabolite repression HPr-like protein YP_001557460.1 KEGG: sha:SH0302 hypothetical protein YP_001557461.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria. YP_001557462.1 KEGG: csc:Csac_1830 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase YP_001557463.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC01811 multidrug resistance ABC transporter ATP-binding and permease YP_001557464.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: mmp:MMP1127 RNA binding S1 YP_001557465.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi01385 transmembrane lipoprotein; RBL02385 YP_001557466.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi01386 transmembrane lipoprotein; RBL02384 YP_001557467.1 PFAM: extracellular solute-binding protein family 1; KEGG: bld:BLi01384 lipoprotein; RBL02387 YP_001557468.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH0483 transcriptional regulator (AraC/XylS family) YP_001557469.1 PFAM: FG-GAP repeat protein; KEGG: bha:BH1114 hypothetical protein YP_001557470.1 KEGG: cno:NT01CX_0505 hypothetical protein YP_001557471.1 KEGG: bsu:BG10173 unknown YP_001557472.1 PFAM: protein of unknown function UPF0079; KEGG: cth:Cthe_1776 protein of unknown function UPF0079 YP_001557473.1 PFAM: peptidase M22 glycoprotease; KEGG: cth:Cthe_1775 peptidase M22, glycoprotease YP_001557474.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: csc:Csac_0216 ribosomal-protein-alanine acetyltransferase YP_001557476.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_001557478.1 KEGG: cno:NT01CX_0478 metalloendopeptidase, , glycoprotease family; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease YP_001557479.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: cno:NT01CX_1092 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001557480.1 KEGG: ddi:DDBDRAFT_0169480 hypothetical protein YP_001557481.1 PFAM: protein of unknown function DUF340 membrane; KEGG: cbf:CLI_1203 hypothetical protein YP_001557483.1 KEGG: tte:TTE2422 hypothetical protein YP_001557484.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpf:CPF_1192 DNA-binding response regulator YP_001557485.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3668 ABC transporter related YP_001557486.1 KEGG: cac:CAC2733 uncharacterized conserved membrane protein YP_001557487.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cbf:CLI_0866 sensor histidine kinase YP_001557488.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BG12964 ABC transport system ATP-binding protein YP_001557490.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: ypi:YpsIP31758_3467 gpr1/fun34/YaaH family protein YP_001557491.1 PFAM: Rhodanese domain protein; KEGG: tde:TDE0839 rhodanese-like domain protein YP_001557492.1 PFAM: RNA methylase; KEGG: cno:NT01CX_2091 nucleic acid methylase YP_001557493.1 PFAM: alpha/beta hydrolase fold; KEGG: tde:TDE2146 hydrolase, alpha/beta fold family YP_001557494.1 PFAM: cell wall hydrolase/autolysin; KEGG: csc:Csac_1532 cell wall hydrolase/autolysin YP_001557495.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: cth:Cthe_0189 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family YP_001557496.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: tte:TTE0621 predicted phosphoesterase YP_001557497.1 TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: bld:BLi00848 intracellular protease/amidase, ThiJ family; RBL01553 YP_001557499.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: dsy:DSY4985 hypothetical protein YP_001557500.1 PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cbf:CLI_2367 small, acid-soluble spore protein YP_001557501.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: bcy:Bcer98_0150 phosphoglucosamine mutase YP_001557502.1 TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; trigger factor domain; KEGG: cth:Cthe_2739 trigger factor YP_001557503.1 KEGG: cbf:CLI_3370 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP YP_001557504.1 binds and unfolds substrates as part of the ClpXP protease YP_001557505.1 KEGG: amt:Amet_1072 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001557506.1 PFAM: GTP-binding protein HSR1-related; KEGG: cdf:CD3300 probable GTP-binding protein YP_001557507.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pfu:PF0824 hypothetical protein YP_001557508.1 PFAM: chemotaxis sensory transducer; KEGG: cbh:CLC_0609 methyl-accepting chemotaxis protein YP_001557510.1 PFAM: protein of unknown function DUF939; KEGG: cbh:CLC_1112 hypothetical protein YP_001557511.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bcl:ABC1143 transcriptional regulator, AraC/XylS family YP_001557513.1 KEGG: ckl:CKL_0518 hypothetical protein YP_001557514.1 PFAM: oxidoreductase domain protein; KEGG: bth:BT_3586 dehydrogenase YP_001557515.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: fjo:Fjoh_4335 protein of unknown function DUF6, transmembrane YP_001557516.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: cno:NT01CX_1200 amidohydrolase YP_001557517.1 KEGG: rba:RB7999 hypothetical protein YP_001557518.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: rba:RB7998 hypothetical protein YP_001557519.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3119 sugar ABC transporter permease YP_001557520.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3118 sugar ABC transporter permease YP_001557521.1 PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC0358 multiple sugar transport system substrate-binding protein YP_001557523.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sco:SCO0663 2-hydroxyacid-family dehydrogenase YP_001557524.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bca:BCE_1902 oxidoreductase family protein YP_001557525.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cpf:CPF_1025 acetyltransferase, GNAT family YP_001557526.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: lip:LI0589 sec-independent protein secretion pathway components YP_001557527.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pth:PTH_1709 sec-independent protein secretion pathway components YP_001557528.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: chy:CHY_0863 sec-independent protein translocase TatC YP_001557529.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cth:Cthe_2979 4Fe-4S ferredoxin, iron-sulfur binding YP_001557530.1 KEGG: cdf:CD0628 hypothetical protein YP_001557531.1 PFAM: polysaccharide deacetylase; KEGG: cth:Cthe_1903 polysaccharide deacetylase YP_001557532.1 PFAM: histidine triad (HIT) protein; KEGG: cbe:Cbei_4080 histidine triad (HIT) protein YP_001557533.1 KEGG: cdf:CD3250 hypothetical protein YP_001557534.1 KEGG: cno:NT01CX_1004 radical SAM protein, TIGR01212 family; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001557535.1 PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: cbf:CLI_0318 malic enzyme YP_001557536.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001557537.1 PFAM: ribosomal protein L31; KEGG: bpu:BPUM_3350 ribosomal protein L31 YP_001557538.1 PFAM: protein of unknown function DUF1385; KEGG: sth:STH72 hypothetical protein YP_001557539.1 TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; KEGG: amt:Amet_0330 modification methylase, HemK family YP_001557540.1 TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: cdf:CD3484 peptide chain release factor 1 YP_001557541.1 PFAM: cation transporter; KEGG: lsl:LSL_0068 potassium uptake protein KtrB YP_001557542.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: cpf:CPF_2142 potassium uptake protein YP_001557543.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cth:Cthe_1222 RNA methyltransferase, TrmH family, group 3 YP_001557544.1 KEGG: ddi:DDB_0232136 villin YP_001557545.1 PFAM: phosphoglucose isomerase (PGI); KEGG: gka:GK2924 glucose-6-phosphate isomerase YP_001557546.1 PFAM: Patatin; KEGG: amt:Amet_4656 patatin YP_001557547.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: bld:BLi04164 ornithine carbamoyltransferase YP_001557548.1 KEGG: sde:Sde_3902 heavy metal efflux pump CzcA YP_001557550.1 TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: cth:Cthe_2588 transcriptional acitvator, Baf family YP_001557551.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: tte:TTE0344 predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family YP_001557552.1 catalyzes the formation of aspartate semialdehyde from aspartyl phosphate YP_001557555.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: sth:STH226 uracil permease YP_001557556.1 PFAM: carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: cth:Cthe_0275 glycosyltransferase 36 YP_001557557.1 PFAM: extracellular solute-binding protein family 5; KEGG: fnu:FN1359 dipeptide-binding protein YP_001557558.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL0227 transmembrane component of ABC transporter YP_001557559.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB3067 oligopeptide ABC transporter permease YP_001557560.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chu:CHU_0463 ABC transporter, ATP-binding protein YP_001557561.1 KEGG: cbe:Cbei_2981 hypothetical protein YP_001557562.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mba:Mbar_A0989 methyl-accepting chemotaxis protein YP_001557563.1 PFAM: ferric-uptake regulator; KEGG: cbf:CLI_2623 transcriptional regulator, Fur family YP_001557564.1 PFAM: periplasmic solute binding protein; KEGG: lmf:LMOf2365_0168 zinc ABC transporter, zinc-binding protein YP_001557565.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sun:SUN_1062 Mn2+/Zn2+ ABC transporter, ATP-binding protein YP_001557566.1 PFAM: ABC-3 protein; inner-membrane translocator; KEGG: gur:Gura_0048 ABC-3 protein YP_001557568.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0836 ABC-type multidrug/protein/lipid transport system, ATPase component YP_001557569.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0835 ABC-type multidrug/protein/lipid transport system, ATPase component YP_001557570.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbe:Cbei_1948 hypothetical protein YP_001557571.1 PFAM: SCP-like extracellular; KEGG: cth:Cthe_0779 copper amine oxidase-like protein YP_001557572.1 PFAM: beta-lactamase domain protein; KEGG: cbf:CLI_2342 metallo-beta-lactamase family protein YP_001557573.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: lsl:LSL_0495 bacterial protein translation initiation factor 3 (IF-3) YP_001557574.1 PFAM: ribosomal protein L35; KEGG: cbf:CLI_3194 ribosomal protein L35 YP_001557575.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001557577.1 KEGG: tet:TTHERM_00245510 Phage tail fiber repeat family protein Pfam: Drf_FH1 PROSITE: ASN_RICH HIS_RICH THR_RICH YP_001557578.1 KEGG: cbf:CLI_0630 hypothetical protein YP_001557579.1 KEGG: tde:TDE1862 hypothetical protein YP_001557580.1 KEGG: dsy:DSY4222 hypothetical protein YP_001557581.1 PFAM: aminotransferase class I and II; KEGG: cbf:CLI_1497 aminotransferase, classes I and II YP_001557582.1 KEGG: csc:Csac_1076 glycoside hydrolase, family 48 YP_001557586.1 KEGG: mst:Msp_1095 DNA double-strand break repair protein Rad50 YP_001557587.1 KEGG: bha:BH0719 transcriptional regulator (TetR/AcrR family) YP_001557588.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: pdi:BDI_2305 hypothetical protein YP_001557589.1 alkyl hydroperoxidase; catalyze the reduction of hydrogen peroxide to water and the reduction of alkyl hydroperoxides to the corresponding alcohols YP_001557590.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_2657 transcriptional regulator, AraC family YP_001557591.1 KEGG: bha:BH0709 hypothetical protein YP_001557592.1 PFAM: oxidoreductase domain protein; KEGG: rca:Rcas_4405 oxidoreductase domain protein YP_001557593.1 KEGG: cbe:Cbei_3248 hypothetical protein YP_001557594.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: cpf:CPF_0871 transposase, IS605 OrfB family YP_001557595.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dsy:DSY4986 hypothetical protein YP_001557598.1 TIGRFAM: valyl-tRNA synthetase; KEGG: cth:Cthe_0324 valyl-tRNA synthetase YP_001557599.1 PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 protein of unknown function DUF342 YP_001557601.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cth:Cthe_1383 tetratricopeptide TPR_2 YP_001557602.1 TIGRFAM: anti-anti-sigma factor; anti-sigma F factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: amt:Amet_2212 anti-sigma-factor antagonist YP_001557603.1 binds to sigma F preventing its association with RNA polymerase during sporulation YP_001557604.1 TIGRFAM: RNA polymerase sigma-F factor; RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: amt:Amet_2214 RNA polymerase, sigma 28 subunit, FliA/WhiG family YP_001557605.1 TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein; KEGG: drm:Dred_1106 SpoVA protein YP_001557606.1 TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein; KEGG: amt:Amet_2220 stage V sporulation AD family protein YP_001557607.1 TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein; KEGG: tte:TTE1321 sporulation protein YP_001557608.1 KEGG: sde:Sde_3238 hypothetical protein YP_001557609.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: ppr:PBPRB1735 hypothetical protein YP_001557610.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cac:CAC0393 KDG operon repressor (gene kdgR), LacI family YP_001557611.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, multiple sugar transport system permease YP_001557612.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3561 AlgM2, multiple sugar transport system permease YP_001557613.1 PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_3560 AlgQ1, multiple sugar transport system substrate-binding protein YP_001557614.1 PFAM: Heparinase II/III family protein; KEGG: atc:AGR_L_3558 hypothetical protein YP_001557615.1 PFAM: Heparinase II/III family protein; KEGG: ypi:YpsIP31758_3577 heparinase II/III-like family protein YP_001557616.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate YP_001557617.1 PFAM: Ribose/galactose isomerase; KEGG: cbe:Cbei_3370 ribose/galactose isomerase YP_001557618.1 PFAM: Peptidoglycan-binding LysM; Ig domain protein group 2 domain protein; Alginate lyase 2; KEGG: pau:PA14_41500 lyase YP_001557619.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_0287 methyl-accepting chemotaxis sensory transducer YP_001557620.1 PFAM: extracellular solute-binding protein family 1; KEGG: gtn:GTNG_0824 sugar transport system sugar-binding protein YP_001557621.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4458 histidine kinase internal region YP_001557622.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cbe:Cbei_4431 response regulator receiver protein YP_001557623.1 PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: cno:NT01CX_1810 penicillin-binding protein 1A/1B YP_001557624.1 PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: cno:NT01CX_1810 penicillin-binding protein 1A/1B YP_001557625.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: gka:GK3152 hypothetical protein YP_001557626.1 PFAM: VanZ family protein; KEGG: cbh:CLC_2550 VanZ family protein YP_001557627.1 KEGG: pdi:BDI_1526 hypothetical protein YP_001557628.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: chy:CHY_2201 ATPase, AAA family YP_001557630.1 PFAM: SEC-C motif domain protein; KEGG: cno:NT01CX_0951 hypothetical protein YP_001557631.1 KEGG: bth:BT_4765 hypothetical protein YP_001557635.1 KEGG: cac:CAC1316 predicted membrane protein YP_001557636.1 PFAM: helix-turn-helix domain protein; KEGG: chy:CHY_1697 prophage LambdaCh01, repressor protein YP_001557637.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cth:Cthe_0806 PAS/PAC sensor hybrid histidine kinase YP_001557638.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: gme:Gmet_2999 response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase YP_001557639.1 KEGG: amt:Amet_4521 hypothetical protein YP_001557640.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: cbe:Cbei_1302 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001557642.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: cth:Cthe_0935 malonyl CoA-acyl carrier protein transacylase YP_001557643.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bha:BH2491 3-oxoacyl-(acyl-carrier protein) reductase YP_001557644.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: cbf:CLI_3824 3-oxoacyl-(acyl-carrier-protein) synthase II YP_001557645.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sgo:SGO_1691 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_001557646.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: cbh:CLC_3575 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YP_001557647.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: cbf:CLI_3821 acetyl-CoA carboxylase, biotin carboxylase YP_001557648.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: cac:CAC3569 acetyl-CoA carboxylase beta subunit YP_001557649.1 KEGG: cac:CAC3568 acetyl-CoA carboxylase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit YP_001557650.1 PFAM: Rubrerythrin; KEGG: cdf:CD0825 rubrerythrin YP_001557651.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cpf:CPF_0555 DNA-binding response regulator, AraC family YP_001557652.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4458 histidine kinase internal region YP_001557653.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120664 permease component of ABC transporter YP_001557654.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120663 permease component of ABC transporter YP_001557655.1 PFAM: extracellular solute-binding protein family 1; KEGG: efa:EF2234 sugar ABC transporter, sugar-binding protein YP_001557656.1 PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: sit:TM1040_3871 beta-glucuronidase YP_001557657.1 PFAM: glycoside hydrolase family 43; KEGG: cth:Cthe_1271 carbohydrate binding family 6 YP_001557658.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cdf:CD2247 germination-specific protease YP_001557659.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cth:Cthe_2680 peptidase S41 YP_001557660.1 TIGRFAM: small GTP-binding protein; GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: tte:TTE1127 GTPases YP_001557661.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001557662.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cdf:CD3625 signaling protein YP_001557663.1 TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: cth:Cthe_0856 branched-chain amino acid aminotransferase YP_001557664.1 PFAM: polysaccharide deacetylase; KEGG: ckl:CKL_0600 predicted polysaccharide deacetylase YP_001557665.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cdf:CD0551 spore cortex-lytic enzyme pre-pro-form ( spore peptidoglycan hydrolase) YP_001557666.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_001557667.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_001557669.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cdf:CD3373 magnesium transporting ATPase, P-type YP_001557670.1 PFAM: transcriptional regulator domain protein; KEGG: cdf:CD3376 transcriptional regulator YP_001557671.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: amt:Amet_0212 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001557672.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: amt:Amet_0212 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001557673.1 KEGG: cno:NT01CX_1843 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_001557674.1 KEGG: cth:Cthe_1344 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_001557675.1 PFAM: beta-lactamase domain protein; KEGG: chy:CHY_2221 metallo-beta-lactamase family protein YP_001557676.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001557677.1 KEGG: chy:CHY_1969 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001557678.1 KEGG: cbe:Cbei_1544 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein YP_001557679.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: csc:Csac_0677 aspartyl-tRNA synthetase YP_001557680.1 PFAM: protein of unknown function DUF1294; KEGG: cbh:CLC_2171 hypothetical protein YP_001557681.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: amt:Amet_1627 cold-shock DNA-binding domain protein YP_001557682.1 PFAM: Aldose 1-epimerase; KEGG: cbe:Cbei_4465 aldose 1-epimerase YP_001557683.1 KEGG: smu:SMU.1673 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_001557684.1 PFAM: response regulator receiver; KEGG: dar:Daro_0240 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal:Hpt YP_001557686.1 PFAM: periplasmic binding protein; KEGG: cth:Cthe_1754 periplasmic binding protein YP_001557687.1 PFAM: transport system permease; ABC-3 protein; KEGG: ctc:CTC00784 iron(III) dicitrate transport system permease fecD YP_001557688.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC00783 ferric enterobactin transport ATP-binding protein fepC YP_001557689.1 PFAM: S-layer domain protein; Propeptide PepSY amd peptidase M4; KEGG: cth:Cthe_2168 propeptide, PepSY amd peptidase M4 YP_001557690.1 KEGG: sak:SAK_0197 adaptor protein YP_001557691.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein YP_001557692.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC0542 methyl-accepting chemotaxis protein YP_001557693.1 KEGG: bha:BH3294 hypothetical protein YP_001557694.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: apl:APL_0819 HTH-type transcriptional repressor PurR YP_001557695.1 KEGG: cpf:CPF_1411 hypothetical protein YP_001557696.1 KEGG: cpe:CPE1200 hypothetical protein YP_001557697.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: bcy:Bcer98_3965 UDP-glucose 4-epimerase YP_001557698.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: cth:Cthe_2212 transcriptional regulator, AraC family YP_001557699.1 PFAM: extracellular solute-binding protein family 1; KEGG: pac:PPA0085 periplasmic protein YP_001557700.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA0086 permease YP_001557701.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA0087 permease YP_001557703.1 PFAM: conserved hypothetical protein; KEGG: cpr:CPR_0537 conserved hypothetical protein TIGR02336 YP_001557704.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: bld:BLi00440 ABC transporter (permease); RBL00398 YP_001557705.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_0684 response regulator receiver protein YP_001557706.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component YP_001557707.1 PFAM: inner-membrane translocator; KEGG: sme:SMc03000 permease ABC transporter protein YP_001557708.1 PFAM: inner-membrane translocator; KEGG: ent:Ent638_4073 inner-membrane translocator YP_001557709.1 KEGG: ret:RHE_PE00289 probable sugar ABC transporter, substrate-binding protein YP_001557710.1 KEGG: rha:RHA1_ro04091 L-arabinose isomerase YP_001557712.1 KEGG: tva:TVAG_289620 hypothetical protein Pfam: PspA_IM30 TFIIS_M UVR DUF526 Filament FH2 DUF593 YP_001557714.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: ava:Ava_3253 DEAD/DEAH box helicase-like YP_001557715.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: surface protein from Gram-positive cocci anchor region YP_001557716.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: gtn:GTNG_2017 transcriptional regulator YP_001557717.1 PFAM: protein of unknown function DUF1680; KEGG: csc:Csac_0717 protein of unknown function DUF1680 YP_001557718.1 PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC1213 sugar ABC transporter substrate-binding protein YP_001557719.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1214 sugar ABC transporter permease YP_001557720.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1215 sugar ABC transporter permease YP_001557721.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cno:NT01CX_0161 catabolite control protein A YP_001557722.1 PFAM: conserved hypothetical protein; KEGG: oih:OB3234 hypothetical protein YP_001557723.1 KEGG: dsy:DSY0991 hypothetical protein YP_001557724.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: oih:OB3268 hypothetical protein YP_001557725.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC0605 oxidoreductase YP_001557726.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC3277 dehydrogenase YP_001557727.1 PFAM: polysaccharide deacetylase; KEGG: amt:Amet_1617 polysaccharide deacetylase YP_001557728.1 KEGG: cdf:CD2245A hypothetical protein YP_001557729.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cdf:CD2682 pyruvate-flavodoxin oxidoreductase YP_001557730.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY0350 hypothetical protein YP_001557731.1 PFAM: chemotaxis sensory transducer; KEGG: cbe:Cbei_4772 methyl-accepting chemotaxis sensory transducer YP_001557732.1 TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine phosphorylase family 2; KEGG: cdf:CD1224 purine nucleoside phosphorylase YP_001557733.1 PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: cpe:CPE0981 probable beta-N-acetylhexosaminidase YP_001557734.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein YP_001557735.1 KEGG: gka:GK0328 hypothetical protein YP_001557736.1 PFAM: regulatory protein TetR; KEGG: lin:lin0482 hypothetical protein YP_001557737.1 KEGG: oih:OB3246 hypothetical protein YP_001557738.1 PFAM: VanZ family protein; KEGG: bcy:Bcer98_0210 VanZ family protein YP_001557739.1 PFAM: chemotaxis sensory transducer; KEGG: ckl:CKL_3118 predicted methyl-accepting chemotaxis protein YP_001557740.1 PFAM: chemotaxis sensory transducer; KEGG: gur:Gura_3394 methyl-accepting chemotaxis sensory transducer YP_001557743.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4963 integral membrane sensor signal transduction histidine kinase YP_001557744.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: sgo:SGO_1175 response regulator YP_001557745.1 PFAM: extracellular solute-binding protein family 1; KEGG: amt:Amet_0896 extracellular solute-binding protein, family 1 YP_001557746.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2403 binding-protein-dependent transport system, inner membrane component YP_001557747.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_0898 binding-protein-dependent transport systems inner membrane component YP_001557748.1 SMART: DNA mismatch repair protein MutS domain protein; KEGG: cdf:CD3408 DNA mismatch repair protein YP_001557749.1 KEGG: rba:RB3971 hypothetical protein-signal peptide and transmembrane prediction YP_001557750.1 PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; KEGG: cth:Cthe_1838 glycoside hydrolase, family 10 YP_001557751.1 PFAM: esterase; KEGG: cdf:CD2204 probable esterase YP_001557752.1 KEGG: lmo:lmo2433 similar to acetylesterase YP_001557753.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pdi:BDI_1529 hypothetical protein YP_001557754.1 KEGG: csc:Csac_1211 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp YP_001557755.1 PFAM: ANTAR domain protein; KEGG: cbe:Cbei_4205 response regulator receiver and ANTAR domain protein YP_001557756.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_001557757.1 catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis YP_001557758.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cth:Cthe_2666 ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_001557759.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: bcz:pE33L466_0245 possible microcin immunity protein YP_001557760.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bth:BT_4143 iron-sulfur cluster binding protein YP_001557761.1 PFAM: sulfatase; KEGG: btl:BALH_4730 sulfatase YP_001557762.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: amt:Amet_3390 aspartyl-tRNA synthetase YP_001557763.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: cth:Cthe_1033 glutamyl-tRNA(Gln) amidotransferase, C subunit YP_001557764.1 KEGG: cth:Cthe_1032 glutamyl-tRNA(Gln) amidotransferase, A subunit; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase YP_001557765.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: csc:Csac_0910 glutamyl-tRNA(Gln) amidotransferase, B subunit YP_001557766.1 PFAM: type IV pilus assembly PilZ YP_001557767.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: tde:TDE0027 DHH superfamily protein, subfamily 1 YP_001557768.1 KEGG: cac:CAC3685 predicted membrane protein YP_001557769.1 involved in de novo purine biosynthesis YP_001557770.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sae:NWMN_1313 major cold-shock protein CspA YP_001557771.1 PFAM: peptidase M16 domain protein; Peptidase M16C associated domain protein; KEGG: cbf:CLI_3481 peptidase YP_001557772.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: bha:BH1367 GTP-binding protein (Era/ThdF family) YP_001557773.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: amt:Amet_3024 DNA repair protein RecO YP_001557774.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001557775.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein YP_001557776.1 PFAM: lipolytic protein G-D-S-L family; KEGG: csc:Csac_0779 lipolytic enzyme, G-D-S-L family YP_001557777.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001557778.1 KEGG: bfs:BF2692 hypothetical membrane protein YP_001557779.1 PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ooe:OEOE_1670 H+/gluconate symporter or related permease YP_001557780.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: tte:TTE2591 N-methylhydaintoinase A YP_001557781.1 PFAM: regulatory protein GntR HTH; KEGG: cbe:Cbei_4085 transcriptional regulator, GntR family YP_001557782.1 KEGG: pat:Patl_3646 phosphomannose isomerase-like YP_001557783.1 PFAM: regulatory protein TetR; KEGG: tde:TDE0332 transcriptional regulator, TetR family YP_001557784.1 KEGG: pmy:Pmen_4204 hypothetical protein YP_001557786.1 PFAM: beta-lactamase domain protein; KEGG: tma:TM1295 hypothetical protein YP_001557787.1 KEGG: sus:Acid_2910 hypothetical protein YP_001557788.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: cth:Cthe_1256 glycoside hydrolase, family 3-like protein YP_001557789.1 KEGG: csc:Csac_0358 ABC-type sugar transport system periplasmic component-like protein YP_001557790.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease YP_001557791.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0362 polysaccharide ABC transporter permease YP_001557792.1 KEGG: bvu:BVU_0177 glycoside hydrolase family 28 YP_001557793.1 PFAM: regulatory protein TetR; KEGG: sus:Acid_2363 transcriptional regulator, TetR family YP_001557795.1 KEGG: bay:RBAM_036080 GalE YP_001557796.1 KEGG: pdi:BDI_2612 hypothetical protein YP_001557797.1 PFAM: Methyltransferase type 11; KEGG: rca:Rcas_1539 magnesium protoporphyrin O-methyltransferase YP_001557798.1 KEGG: ckl:CKL_2492 hypothetical protein YP_001557799.1 PFAM: Abortive infection protein; KEGG: cef:CE0449 hypothetical protein YP_001557800.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bsu:BG12132 similar to transcriptional regulator (AraC/XylS family) YP_001557801.1 KEGG: dsy:DSY2128 hypothetical protein YP_001557802.1 KEGG: bcz:BCZK1145 acetyltransferase, GNAT family YP_001557803.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: efa:EF1519 cation-transporting ATPase, E1-E2 family YP_001557804.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: sep:SE1109 hypothetical protein YP_001557805.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sth:STH1741 RNA polymerase ECF-type sigma factor YP_001557806.1 KEGG: ctc:CTC00666 hypothetical protein YP_001557807.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: cth:Cthe_1803 cobalamin (vitamin B12) biosynthesis CbiM protein YP_001557808.1 PFAM: Urea transporter; KEGG: ssp:SSP0266 hypothetical protein YP_001557809.1 PFAM: Urease accessory protein UreD; KEGG: bca:BCE_3658 urease accessory protein UreD YP_001557810.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: bca:BCE_3659 urease accessory protein UreG YP_001557811.1 PFAM: Urease accessory protein UreF; KEGG: gka:GK1928 urease accessory protein YP_001557812.1 involved in the assembly of the urease metallocenter; possible nickel donor YP_001557813.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_001557814.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active YP_001557815.1 KEGG: gka:GK1932 urease gamma subunit; TIGRFAM: urease, gamma subunit; PFAM: Urease gamma subunit region YP_001557816.1 PFAM: protein of unknown function DUF156; KEGG: dsy:DSY0389 hypothetical protein YP_001557817.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cth:Cthe_1802 cobalt ABC transporter, inner membrane subunit CbiQ YP_001557818.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1801 ABC transporter related protein YP_001557819.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bfr:BF1755 hypothetical protein YP_001557820.1 KEGG: efa:EF1239 hypothetical protein YP_001557821.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2725 binding-protein-dependent transport systems inner membrane component YP_001557822.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2724 binding-protein-dependent transport systems inner membrane component YP_001557823.1 PFAM: extracellular solute-binding protein family 1; KEGG: lmf:LMOf2365_2031 ABC transporter, substrate-binding protein YP_001557824.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cno:NT01CX_0963 catabolite control protein A YP_001557825.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: efa:EF1238 glycosyl hydrolase, family 3 YP_001557826.1 PFAM: protein of unknown function DUF296; KEGG: ctc:CTC01209 hypothetical protein YP_001557827.1 KEGG: swo:Swol_2178 hypothetical protein YP_001557828.1 KEGG: swo:Swol_2179 hypothetical protein YP_001557829.1 PFAM: Spore coat protein CotH; KEGG: mla:Mlab_1597 hypothetical protein YP_001557830.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE0774 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain YP_001557831.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cpf:CPF_2640 sensor histidine kinase YP_001557832.1 PFAM: LrgA family protein; KEGG: ckl:CKL_2031 hypothetical protein YP_001557833.1 PFAM: LrgB family protein; KEGG: cbe:Cbei_5006 LrgB family protein YP_001557834.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: dsy:DSY3774 hypothetical protein YP_001557835.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bcl:ABC3285 transcriptional regulator, AraC/XylS family YP_001557836.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: bth:BT_0730 mRNA-binding protein YP_001557837.1 PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: tde:TDE1730 glycosyl hydrolase, family 2 YP_001557838.1 KEGG: cpf:CPF_0825 hypothetical protein YP_001557839.1 PFAM: zinc/iron permease; KEGG: cbf:CLI_1259 zinc transporter, ZIP family YP_001557840.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: tte:TTE2373 transcription elongation factor YP_001557842.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: dsy:DSY2459 hypothetical protein YP_001557843.1 PFAM: protein of unknown function DUF368; KEGG: cth:Cthe_2510 protein of unknown function DUF368 YP_001557844.1 KEGG: pin:Ping_0445 membrane protein involved in colicin uptake-like protein YP_001557845.1 PFAM: protein of unknown function DUF421; KEGG: dsy:DSY1538 hypothetical protein YP_001557846.1 KEGG: ret:RHE_PC00112 hypothetical protein YP_001557847.1 KEGG: rno:305567 similar to Hypothetical protein CBG23547 (predicted) YP_001557848.1 PFAM: protein of unknown function DUF1540; KEGG: cbe:Cbei_3713 protein of unknown function DUF1540 YP_001557850.1 PFAM: NLP/P60 protein; SH3 type 3 domain protein; KEGG: lsa:LSA0106 hypothetical cell surface protein precursor YP_001557852.1 PFAM: arsenate reductase and related; KEGG: cno:NT01CX_2298 arsenate reductase-like protein YP_001557853.1 PFAM: protein of unknown function DUF161; KEGG: cbe:Cbei_3126 membrane -like protein YP_001557855.1 TIGRFAM: proton-coupled thiamine transporter YuaJ; PFAM: Beta tubulin, autoregulation binding site; KEGG: tte:TTE2512 hypothetical protein YP_001557856.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_4501 helix-turn-helix-domain containing protein, AraC type YP_001557857.1 PFAM: transport system permease; KEGG: bcl:ABC2895 enterochelin ABC transporter permease YP_001557858.1 PFAM: transport system permease; KEGG: bcy:Bcer98_0360 transport system permease YP_001557859.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_0361 ABC transporter-related protein YP_001557860.1 PFAM: periplasmic binding protein; KEGG: bcy:Bcer98_0362 periplasmic binding protein YP_001557861.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: dsy:DSY1195 hypothetical protein YP_001557862.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dsy:DSY1196 probable cytochrome c biogenesis protein CcdA YP_001557863.1 PFAM: Rhodanese domain protein; KEGG: cbh:CLC_1184 phage shock protein YP_001557864.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: cbe:Cbei_0557 transcriptional regulator, MerR family YP_001557865.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dsy:DSY2429 hypothetical protein YP_001557866.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: cdf:CD0629 transcriptional regulator YP_001557867.1 TIGRFAM: pyruvate kinase; PFAM: PEP-utilising protein mobile region; Pyruvate kinase barrel; Pyruvate kinase alpha/beta; KEGG: csc:Csac_1831 pyruvate kinase YP_001557868.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: lmf:LMOf2365_2658 DNA-binding response regulator KdpE YP_001557869.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dsy:DSY4737 hypothetical protein YP_001557870.1 KEGG: csc:Csac_0633 ATP-dependent endonuclease of the OLD family-like protein YP_001557871.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: cbe:Cbei_2532 peptidase U61, LD-carboxypeptidase A YP_001557872.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: cth:Cthe_0898 metal dependent phosphohydrolase YP_001557873.1 TIGRFAM: C_GCAxxG_C_C family protein; PFAM: GCN5-related N-acetyltransferase; KEGG: bcl:ABC4050 hypothetical protein YP_001557874.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: cbe:Cbei_0293 threonyl-tRNA synthetase YP_001557875.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbf:CLI_0474 methyl-accepting chemotaxis protein YP_001557876.1 PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; KEGG: cth:Cthe_2739 trigger factor YP_001557877.1 PFAM: GerA spore germination protein; KEGG: cpe:CPE0984 stage V sporulation protein AF YP_001557878.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_001557879.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_001557880.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; Cytidine and deoxycytidylate deaminase zinc-binding domain protein; KEGG: cth:Cthe_1582 cytidine deaminase YP_001557881.1 PFAM: basic membrane lipoprotein; KEGG: dsy:DSY1171 hypothetical protein YP_001557882.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1170 hypothetical protein YP_001557883.1 PFAM: inner-membrane translocator; KEGG: dsy:DSY1169 hypothetical protein YP_001557884.1 PFAM: inner-membrane translocator; KEGG: dsy:DSY1168 hypothetical protein YP_001557885.1 PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: fnu:FN0061 thermostable carboxypeptidase 1 YP_001557886.1 PFAM: protein of unknown function DUF161; KEGG: cbe:Cbei_3252 protein of unknown function DUF161 YP_001557887.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001557890.1 PFAM: basic membrane lipoprotein; KEGG: cno:NT01CX_0401 membrane protein, Bmp family YP_001557891.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0400 ABC transporter, ATP-binding protein YP_001557892.1 PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0399 branched-chain amino acid transport system / permease component YP_001557893.1 PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0398 branched-chain amino acid transport system / permease component YP_001557894.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: cbe:Cbei_4358 transcriptional regulator, AraC family YP_001557895.1 PFAM: glycoside hydrolase family 4; KEGG: cbe:Cbei_4359 glycoside hydrolase, family 4 YP_001557896.1 KEGG: fjo:Fjoh_4231 hypothetical protein YP_001557897.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bsu:BG12848 two-component response regulator. potential cognate sensor kinase is YesM YP_001557898.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: bld:BLi00440 ABC transporter (permease); RBL00398 YP_001557899.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB2090 hypothetical conserved protein YP_001557900.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0481 ABC transporter (permiase) YP_001557901.1 PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC1144 sugar ABC transporter substrate-binding protein YP_001557902.1 PFAM: glycosyl hydrolase family 88; KEGG: bcl:ABC3274 unsaturated glucuronyl hydrolase YP_001557904.1 KEGG: ppd:Ppro_2620 beta-lactamase domain protein YP_001557905.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: bfs:BF0163 haloacid dehalogenase-like hydrolase YP_001557906.1 KEGG: cbe:Cbei_3228 hypothetical protein YP_001557907.1 PFAM: protein of unknown function DUF955; KEGG: cbe:Cbei_3960 protein of unknown function DUF955 YP_001557908.1 PFAM: helix-turn-helix domain protein; KEGG: bce:BC3704 LexA repressor YP_001557909.1 KEGG: drm:Dred_2611 hypothetical protein YP_001557911.1 KEGG: cdf:CD2910 phage protein YP_001557912.1 KEGG: cdf:CD2909 phage protein YP_001557913.1 PFAM: XkdN-like protein; KEGG: cdf:CD2908 phage protein YP_001557914.1 TIGRFAM: phage tape measure protein; KEGG: cth:Cthe_2488 phage tape measure protein YP_001557915.1 PFAM: Peptidoglycan-binding LysM; KEGG: cdf:CD2904 phage cell wall hydrolase YP_001557916.1 KEGG: cdf:CD2903 phage cell wall hydrolase YP_001557917.1 KEGG: dsy:DSY3951 hypothetical protein YP_001557918.1 KEGG: cdf:CD2901 phage protein YP_001557919.1 KEGG: cdf:CD2900 phage tail protein YP_001557920.1 KEGG: cdf:CD2899 phage protein YP_001557924.1 TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: bha:BH0965 unknown conserved protein YP_001557925.1 KEGG: dsy:DSY4643 hypothetical protein YP_001557928.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: drm:Dred_1834 binding-protein-dependent transport systems inner membrane component YP_001557929.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbf:CLI_3310 ABC transporter, ATP-binding protein YP_001557930.1 KEGG: mac:MA3471 hypothetical protein YP_001557931.1 PFAM: extracellular solute-binding protein family 5; KEGG: bcy:Bcer98_0219 extracellular solute-binding protein family 5 YP_001557932.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC0177 oligopeptide transport permease YP_001557933.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE2524 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components YP_001557934.1 KEGG: cpr:CPR_2255 oligopeptide ABC transporter, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001557935.1 KEGG: cac:CAC0180 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001557938.1 PFAM: extracellular solute-binding protein family 5; KEGG: tte:TTE2522 ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components YP_001557939.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC0177 oligopeptide transport permease YP_001557940.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_2256 oligopeptide ABC transporter, permease component YP_001557941.1 KEGG: cpr:CPR_2255 oligopeptide ABC transporter, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001557942.1 KEGG: tte:TTE2526 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001557944.1 PFAM: Radical SAM domain protein; KEGG: dsy:DSY2535 hypothetical protein YP_001557945.1 KEGG: drm:Dred_1283 hypothetical protein YP_001557946.1 KEGG: cbf:CLI_1135 hypothetical protein YP_001557947.1 KEGG: ddi:DDBDRAFT_0186922 hypothetical protein YP_001557948.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tte:TTE1983 predicted phosphatase/phosphohexomutase YP_001557949.1 KEGG: cbe:Cbei_4812 hypothetical protein YP_001557950.1 KEGG: cth:Cthe_0359 hypothetical protein YP_001557951.1 PFAM: adenylate cyclase; KEGG: pdi:BDI_3761 hypothetical protein YP_001557952.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_001557953.1 PFAM: Spore germination protein; KEGG: ctc:CTC01778 spore germination protein KB YP_001557954.1 KEGG: ctc:CTC01777 spore germination protein KC YP_001557955.1 PFAM: GerA spore germination protein; KEGG: ctc:CTC01776 spore germination protein KA YP_001557956.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: dsy:DSY1195 hypothetical protein YP_001557957.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dsy:DSY1196 probable cytochrome c biogenesis protein CcdA YP_001557958.1 PFAM: protein of unknown function DUF218; KEGG: cno:NT01CX_1576 hypothetical protein YP_001557963.1 SMART: AAA ATPase; KEGG: hdu:HD1304 tight adherence protein A YP_001557972.1 KEGG: cth:Cthe_2278 extracellular solute-binding protein, family 3 YP_001557973.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shw:Sputw3181_0917 polar amino acid ABC transporter, inner membrane subunit YP_001557974.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1675 ABC transporter related YP_001557975.1 KEGG: ctc:CTC00469 predicted transglutaminase/protease YP_001557976.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: ssa:SSA_0217 two-component system transcriptional regulator (CheY domain and HTH-like DNA-binding domain) YP_001557978.1 PFAM: ATP-binding region ATPase domain protein; KEGG: cac:CAC1454 membrane associated histidine kinase-like ATPase YP_001557979.1 PFAM: regulatory protein MarR; transcriptional regulator TrmB; KEGG: dsy:DSY0085 hypothetical protein YP_001557980.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_1784 predicted transport protein YP_001557981.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2513 ABC-type multidrug/protein/lipid transport system, ATPase component YP_001557982.1 KEGG: bhe:BH00920 cyclic beta 1-2 glucan synthetase YP_001557983.1 PFAM: glycoside hydrolase family 30; KEGG: csc:Csac_2513 glucosylceramidase YP_001557984.1 KEGG: cdf:CD3500 foldase lipoprotein (late stage protein export lipoprotein) YP_001557985.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2554 binding-protein-dependent transport systems inner membrane component YP_001557986.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2553 binding-protein-dependent transport systems inner membrane component YP_001557987.1 PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_2552 extracellular solute-binding protein, family 1 YP_001557988.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: csc:Csac_2551 integral membrane sensor signal transduction histidine kinase YP_001557989.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_2550 response regulator receiver protein YP_001557990.1 KEGG: fno:Fnod_0956 hypothetical protein YP_001557991.1 PFAM: beta-lactamase; KEGG: sil:SPO1641 beta-lactamase YP_001557992.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbe:Cbei_2117 two component transcriptional regulator, winged helix family YP_001557993.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cbe:Cbei_2118 integral membrane sensor signal transduction histidine kinase YP_001557994.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cpe:CPE0026 hypothetical protein YP_001557995.1 KEGG: cth:Cthe_0907 hypothetical protein YP_001557996.1 PFAM: Radical SAM domain protein; KEGG: cth:Cthe_0906 radical SAM YP_001557997.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: csc:Csac_2481 methyltransferase type 11 YP_001557999.1 KEGG: afm:AFUA_3G12590 conserved hypothetical protein YP_001558000.1 PFAM: glycoside hydrolase family 43; KEGG: bld:BLi00864 xylan beta-1,4-xylosidase; RBL03427 YP_001558001.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cbe:Cbei_4321 single-stranded-DNA-specific exonuclease RecJ YP_001558003.1 KEGG: cbe:Cbei_1909 membrane -like protein YP_001558004.1 KEGG: cpe:CPE0991 tRNA-pseudouridine synthase I; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_001558005.1 PFAM: NUDIX hydrolase; KEGG: ecs:ECs3139 hypothetical protein YP_001558006.1 KEGG: amt:Amet_4213 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3 YP_001558007.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: amt:Amet_4212 orotidine 5'-phosphate decarboxylase YP_001558008.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_2656 MATE efflux family protein YP_001558009.1 PFAM: SNARE associated Golgi protein; KEGG: cdf:CD0314 hypothetical protein YP_001558010.1 KEGG: lwe:lwe2206 CoiA-like family protein YP_001558011.1 KEGG: llc:LACR_1479 hypothetical protein YP_001558013.1 KEGG: pfa:PF13_0097 hypothetical protein YP_001558014.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_001558015.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cdf:CD2573 probable hydrolase YP_001558016.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: cno:NT01CX_0980 D-isomer specific 2-hydroxyacid dehydrogenase YP_001558017.1 PFAM: Catalase domain protein; KEGG: bce:BC1155 catalase YP_001558018.1 PFAM: extracellular solute-binding protein family 1; KEGG: cth:Cthe_0747 extracellular solute-binding protein, family 1 YP_001558019.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_0748 binding-protein-dependent transport systems inner membrane component YP_001558020.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1462 hypothetical protein YP_001558021.1 KEGG: cth:Cthe_0750 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_001558022.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: cth:Cthe_0751 transcriptional regulator, XRE family with cupin sensor YP_001558023.1 KEGG: cth:Cthe_2569 hypothetical protein YP_001558024.1 PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_3249 drug resistance ABC transporter, ATP-binding protein YP_001558025.1 modulates transcription in response to the NADH/NAD(+) redox state YP_001558026.1 KEGG: cth:Cthe_2695 hypothetical protein YP_001558027.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: cno:NT01CX_1261 holo-(acyl-carrier-protein) synthase YP_001558028.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: tte:TTE2170 predicted sugar kinase YP_001558029.1 KEGG: cbe:Cbei_2758 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_001558030.1 PFAM: PemK family protein; KEGG: cth:Cthe_2699 transcriptional modulator of MazE/toxin, MazF YP_001558031.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cbf:CLI_2985 CBS/transporter-associated domain protein YP_001558032.1 PFAM: protein of unknown function DUF1212; KEGG: cbe:Cbei_1867 protein of unknown function DUF1212 YP_001558033.1 KEGG: csc:Csac_2063 hypothetical protein YP_001558034.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_001558036.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cpf:CPF_1092 RNA polymerase sigma-70 factor, ECF family YP_001558037.1 KEGG: cpf:CPF_1093 hypothetical protein YP_001558038.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_1094 ABC transporter, ATP-binding protein YP_001558039.1 KEGG: cpf:CPF_1095 hypothetical protein YP_001558040.1 KEGG: cpf:CPF_1096 hypothetical protein YP_001558041.1 KEGG: cbh:CLC_1692 hypothetical protein YP_001558042.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein YP_001558043.1 KEGG: bsu:BG13636 hypothetical protein YP_001558045.1 KEGG: cph:Cpha266_1604 hypothetical protein YP_001558046.1 KEGG: cno:NT01CX_1720 hypothetical protein YP_001558048.1 KEGG: bba:Bd3697 hypothetical protein YP_001558050.1 KEGG: cbh:CLC_1692 hypothetical protein YP_001558051.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bsu:BG13838 similar to transcriptional regulator (AraC/XylS family) YP_001558052.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi03166 membrane protein; RBL03398 YP_001558053.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0557 sugar ABC transporter permease YP_001558054.1 PFAM: extracellular solute-binding protein family 1; KEGG: bld:BLi03168 similar to lipoprotein; RBL03402 YP_001558055.1 PFAM: polysaccharide lyase family 8; polysaccharide lyase family 8 domain protein; KEGG: bth:BT_2964 chondroitinase AC precursor YP_001558056.1 KEGG: fjo:Fjoh_4231 hypothetical protein YP_001558057.1 PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 unsaturated glucuronyl hydrolase YP_001558058.1 KEGG: abu:Abu_1539 conserved hypothetical protein YP_001558059.1 KEGG: bcl:ABC1987 hypothetical protein YP_001558060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1553 ABC transporter related YP_001558061.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: gka:GK2842 leucyl-tRNA synthetase YP_001558062.1 KEGG: mba:Mbar_A1995 cell surface protein YP_001558063.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: dsy:DSY2792 hypothetical protein YP_001558064.1 KEGG: cno:NT01CX_1307 hypothetical protein YP_001558065.1 KEGG: dsy:DSY2794 hypothetical protein YP_001558066.1 KEGG: mac:MA4292 cell surface protein YP_001558067.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ldb:Ldb1881 RNA polymerase sigma factor YP_001558070.1 KEGG: btl:BALH_1875 lactoylglutathione lyase YP_001558071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbe:Cbei_3606 GCN5-related N-acetyltransferase YP_001558073.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ssa:SSA_1614 acetyltransferase, GNAT family YP_001558074.1 KEGG: cdf:CD0593 hypothetical protein YP_001558075.1 PFAM: helix-turn-helix domain protein; KEGG: spb:M28_Spy1636 transcriptional regulator, Cro/CI family YP_001558076.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: fnu:FN1967 hypothetical protein YP_001558077.1 catalyzes a two-step reaction, first charging an alanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001558078.1 KEGG: oih:OB1084 hypothetical protein YP_001558079.1 PFAM: Aldehyde Dehydrogenase_; KEGG: cbe:Cbei_0729 aldehyde dehydrogenase YP_001558080.1 KEGG: ade:Adeh_1850 hypothetical protein YP_001558081.1 PFAM: HhH-GPD family protein; KEGG: pca:Pcar_0009 endo III-related endonuclease YP_001558082.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_0247 ABC transporter-related protein YP_001558083.1 KEGG: cbe:Cbei_4079 hypothetical protein YP_001558084.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbe:Cbei_2249 two component transcriptional regulator, winged helix family YP_001558085.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cbe:Cbei_2250 histidine kinase YP_001558086.1 KEGG: btk:BT9727_2543 possible uridine kinase YP_001558088.1 KEGG: cdf:CD1511 hypothetical protein YP_001558089.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_4919 nitroreductase YP_001558090.1 KEGG: cpr:CPR_0544 cysteine-rich domain family YP_001558091.1 KEGG: cac:CAC0729 hypothetical protein YP_001558092.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cdf:CD3352 AraC-family transcriptional regulator YP_001558093.1 PFAM: peptidase S14 ClpP; KEGG: cpr:CPR_1385 ATP-dependent Clp protease, proteolytic subunit ClpP YP_001558094.1 PFAM: alpha/beta hydrolase fold; KEGG: bcz:BCZK2148 hydrolase, alpha/beta fold family YP_001558095.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: cdf:CD1089 two-component response regulator YP_001558096.1 PFAM: ATP-binding region ATPase domain protein; KEGG: cbh:CLC_1104 sensor histidine kinase YP_001558097.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH2664 ABC transporter ATP-binding protein YP_001558098.1 PFAM: protein of unknown function DUF990; KEGG: cpr:CPR_0171 ABC transporter, permease YP_001558099.1 PFAM: protein of unknown function DUF990; KEGG: gtn:GTNG_0486 ABC transporter (permease) YP_001558100.1 KEGG: tde:TDE1724 hypothetical protein YP_001558101.1 KEGG: cac:CAC0222 exodeoxyribonuclease (exoA); TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_001558102.1 KEGG: cpe:CPE0798 hypothetical protein YP_001558104.1 KEGG: cno:NT01CX_2017 hypothetical protein YP_001558106.1 PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin) YP_001558107.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: cpf:CPF_0793 flavodoxin family protein YP_001558108.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bha:BH0578 transcriptional regulator (GntR family) YP_001558109.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: bay:RBAM_035260 ThiD YP_001558110.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: cbh:CLC_0926 hypothetical protein YP_001558111.1 KEGG: cdf:CD1724 hypothetical protein YP_001558112.1 KEGG: amt:Amet_3507 hypothetical protein YP_001558113.1 KEGG: dsy:DSY1050 hypothetical protein YP_001558114.1 KEGG: dsy:DSY1051 hypothetical protein YP_001558115.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ssp:SSP1638 lipase YP_001558116.1 PFAM: protein of unknown function UPF0061; KEGG: cbh:CLC_1238 hypothetical protein YP_001558117.1 PFAM: protein of unknown function UPF0126; KEGG: lla:L169795 hypothetical protein YP_001558118.1 KEGG: amt:Amet_2129 hypothetical protein YP_001558119.1 PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cpf:CPF_1242 dicarboxylate transporter YP_001558121.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: cbh:CLC_2702 2'-5' RNA ligase YP_001558122.1 PFAM: FMN-binding domain protein; KEGG: dsy:DSY1155 probable chlorophenol reductive dehalogenase YP_001558123.1 PFAM: regulatory protein ArsR; KEGG: sgo:SGO_1596 transcription regulator YP_001558124.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tko:TK2026 ABC-type multidrug transport system, ATPase component YP_001558125.1 PFAM: ABC-2 type transporter; KEGG: mst:Msp_0196 ABC-type multidrug transport system, permease YP_001558126.1 PFAM: ABC-2 type transporter; KEGG: tpt:Tpet_1474 ABC-2 type transporter YP_001558127.1 PFAM: regulatory protein MerR; TipAS antibiotic-recognition domain protein; KEGG: dsy:DSY4240 hypothetical protein YP_001558128.1 PFAM: tRNA synthetase class II (G H P and S); KEGG: kra:Krad_0299 histidine--tRNA ligase YP_001558129.1 PFAM: helix-turn-helix domain protein; KEGG: mac:MA0999 hypothetical protein YP_001558131.1 PFAM: regulatory protein GntR HTH; KEGG: gtn:GTNG_1824 transcriptional regulator YP_001558132.1 PFAM: extracellular solute-binding protein family 1; KEGG: bay:RBAM_029660 YurO YP_001558133.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE2416 ABC-type sugar transport systems, permease components YP_001558134.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcz:BCZK1636 sugar ABC transporter, permease YP_001558138.1 PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: lwe:lwe2763 glycosyl transferase, family 65 YP_001558140.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cac:CAC2614 beta-phosphoglucomutase YP_001558141.1 PFAM: Na+/H+ antiporter NhaC; KEGG: cbf:CLI_3587 Na+/H+ antiporter family protein YP_001558143.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: chy:CHY_0092 DNA-binding response regulator YP_001558144.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: chy:CHY_0091 sensor histidine kinase YP_001558145.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:BCZK2229 ABC transporter, ATP-binding protein YP_001558146.1 PFAM: protein of unknown function DUF214; KEGG: bcz:BCZK2228 ABC transporter, permease YP_001558147.1 PFAM: sodium/glutamate symporter; KEGG: cno:NT01CX_2103 sodium/glutamate symporter YP_001558148.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: tva:TVAG_422780 alcohol dehydrogensae, Pfam: Fe-ADH DHQ_synthase PROSITE: COPPER_BLUE ADH_IRON_1 YP_001558149.1 KEGG: cac:CAC1006 MutT-like (NUDIX) hydrolase YP_001558151.1 PFAM: PfkB domain protein; KEGG: cbh:CLC_1712 kinase, PfkB family YP_001558152.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tde:TDE2748 acetyltransferase, GNAT family YP_001558153.1 PFAM: NUDIX hydrolase; KEGG: lbu:LBUL_1555 NUDIX family hydrolase YP_001558154.1 PFAM: chemotaxis sensory transducer; KEGG: ctc:CTC01155 methyl-accepting chemotaxis protein YP_001558156.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: btl:BALH_4611 ABC transporter, ATP-binding protein YP_001558158.1 PFAM: protein of unknown function DUF161; KEGG: tte:TTE2159 hypothetical protein YP_001558159.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: lac:LBA0722 protein-tyrosine phosphatase YP_001558160.1 PFAM: pseudouridine synthase; KEGG: cdf:CD3582 pseudouridylate synthase YP_001558162.1 PFAM: Radical SAM domain protein; KEGG: cbe:Cbei_1527 radical SAM domain protein YP_001558164.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cth:Cthe_1438 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001558165.1 KEGG: cth:Cthe_1437 hypothetical protein YP_001558166.1 TIGRFAM: holin, SPP1 family; PFAM: Holin SPP1 family protein; KEGG: lla:L16574 holin YP_001558167.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC3276 dehydrogenase YP_001558168.1 PFAM: aldo/keto reductase; KEGG: ava:Ava_4145 aldo/keto reductase YP_001558169.1 PFAM: aldo/keto reductase; KEGG: cbe:Cbei_3134 aldo/keto reductase YP_001558170.1 PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cdf:CD2663 signaling protein YP_001558171.1 PFAM: protein of unknown function DUF1113; KEGG: bad:BAD_0916 hypothetical protein YP_001558172.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cth:Cthe_0298 methyl-accepting chemotaxis sensory transducer YP_001558173.1 KEGG: csc:Csac_0437 hypothetical protein YP_001558174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component YP_001558175.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component YP_001558176.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpe:CPE0707 probable ABC transporter YP_001558177.1 KEGG: sab:SAB2218c probable membrane protein YP_001558178.1 KEGG: bay:RBAM_010140 YhaP YP_001558179.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: smd:Smed_5753 regulatory protein LacI YP_001558180.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate YP_001558181.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: amt:Amet_3783 mannitol dehydrogenase, C-terminal domain YP_001558182.1 KEGG: bth:BT_0447 S-layer related protein precursor, sialic acid-specific 9-O-acetylesterase YP_001558183.1 PFAM: metallophosphoesterase; KEGG: cac:CAC3027 predicted phosphohydrolase YP_001558185.1 PFAM: Na+/H+ antiporter NhaC; KEGG: drm:Dred_1645 Na+/H+ antiporter NhaC YP_001558186.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pho:PH0577 damage-inducible protein YP_001558187.1 KEGG: dsy:DSY3435 hypothetical protein YP_001558188.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cbe:Cbei_3435 protein of unknown function DUF6, transmembrane YP_001558189.1 PFAM: protein of unknown function DUF161; KEGG: ctc:CTC02511 transporter YP_001558190.1 PFAM: glycoside hydrolase family 26; type 3a cellulose-binding domain protein; Carbohydrate binding family 6; KEGG: chu:CHU_0353 CHU large protein; candidate b-mannanase, glycoside hydrolase family 26 protein YP_001558191.1 PFAM: extracellular solute-binding protein family 1; KEGG: cgt:cgR_2367 hypothetical protein YP_001558192.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cgb:cg2704 ABC-type sugar transport system, permease component YP_001558193.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cgt:cgR_2364 hypothetical protein YP_001558194.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cno:NT01CX_0963 catabolite control protein A YP_001558196.1 KEGG: dsy:DSY0724 hypothetical protein YP_001558197.1 PFAM: peptidase U32; KEGG: eba:ebA5191 conserved hypothetical protein, predicted peptidase U32 family YP_001558198.1 KEGG: mlo:mll9509 regulatory components of sensory transduction system; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein YP_001558199.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mmw:Mmwyl1_2733 periplasmic ligand-binding sensor protein YP_001558200.1 PFAM: ABC transporter related; KEGG: cpr:CPR_0053 antibiotic ABC transporter, ATP-binding protein YP_001558201.1 PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: amt:Amet_4762 peptidase M1, membrane alanine aminopeptidase-like protein YP_001558202.1 PFAM: protein of unknown function DUF419; KEGG: pdi:BDI_2564 hypothetical protein YP_001558203.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: cbe:Cbei_1736 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001558205.1 KEGG: bpu:BPUM_2114 possible aminotransferase YP_001558206.1 PFAM: extracellular solute-binding protein family 1; KEGG: dsy:DSY1083 hypothetical protein YP_001558207.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1078 hypothetical protein YP_001558208.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_2125 binding-protein-dependent transport systems inner membrane component YP_001558209.1 KEGG: dsy:DSY1080 hypothetical protein YP_001558210.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: btk:BT9727_1674 GTP-binding protein YP_001558211.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: amt:Amet_3812 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001558212.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: gvi:glr2481 signal peptidase I YP_001558213.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bce:BC4940 ABC transporter ATP-binding protein YP_001558214.1 PFAM: conserved hypothetical protein; KEGG: btk:BT9727_4653 probable membrane protein YP_001558215.1 PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cpf:CPF_0767 iron-sulfur cluster-binding protein, rieske family YP_001558216.1 KEGG: cbe:Cbei_2796 Mug G:T/U mismatch-specific DNA glycosylase YP_001558217.1 PFAM: peptidase M42 family protein; KEGG: cpe:CPE0995 probable glucanase YP_001558219.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cac:CAC3466 transcriptional regulator, LysR family YP_001558220.1 PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: blo:BL1740 probable oxidoreductase YP_001558221.1 SMART: Parallel beta-helix repeat; KEGG: oih:OB0217 hypothetical protein YP_001558222.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: cac:CAC1372 cobalamin biosynthesis enzyme CobT YP_001558223.1 KEGG: cpr:CPR_1109 hypothetical protein YP_001558224.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cbe:Cbei_1265 cobalamin-5-phosphate synthase CobS YP_001558225.1 KEGG: cpr:CPR_1111 cobalamin biosynthesis protein CobU, , truncation YP_001558226.1 PFAM: Phosphoglycerate mutase; KEGG: cpf:CPF_1293 phosphoglycerate mutase family protein YP_001558227.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: cpr:CPR_1113 cobalamin biosynthesis protein CobD YP_001558228.1 PFAM: aminotransferase class I and II; KEGG: cpe:CPE1040 probable Thr-phospho decarboxylase YP_001558229.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_001558230.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: cbe:Cbei_1263 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_001558231.1 PFAM: NADPH-dependent FMN reductase; KEGG: dsy:DSY1214 hypothetical protein YP_001558232.1 KEGG: cbf:CLI_0591 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like YP_001558233.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cpe:CPE0864 hypothetical protein YP_001558234.1 TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: cbe:Cbei_4903 L-lactate dehydrogenase YP_001558235.1 PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC0558 sugar ABC transporter substrate-binding protein YP_001558236.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease YP_001558237.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1455 ABC transporter permease YP_001558238.1 TIGRFAM: glucokinase regulatory-like protein; PFAM: sugar isomerase (SIS); KEGG: plu:plu0403 hypothetical protein YP_001558239.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: amt:Amet_4190 transcriptional regulator, RpiR family YP_001558240.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_001558241.1 PFAM: conserved hypothetical protein; KEGG: cac:CAC0185 uncharacterized membrane protein, YBBC B.subtilis ortholog YP_001558242.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: tte:TTE0215 Beta-glucosidase-related glycosidases YP_001558243.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cac:CAC0183 transcriptional regulators of NagC/XylR (ROK) family, sugar kinase YP_001558244.1 KEGG: bcl:ABC0535 hypothetical protein YP_001558245.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH1197 ABC transporter ATP-binding protein YP_001558246.1 KEGG: sth:STH1198 ABC transporter permease YP_001558247.1 PFAM: protein of unknown function DUF990; KEGG: sth:STH1199 hypothetical protein YP_001558249.1 KEGG: rle:RL0518 solute-binding component of ABC transporter YP_001558250.1 PFAM: inner-membrane translocator; KEGG: ctc:CTC00906 ribose transport system permease rbsC YP_001558251.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component YP_001558252.1 KEGG: btk:BT9727_0312 conserved hypothetical protein, possible methyltransferase YP_001558253.1 KEGG: nmu:Nmul_A0328 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001558254.1 PFAM: NUDIX hydrolase; Zinc ribbon NADH pyrophosphatase; KEGG: lpl:lp_3123 pyrophosphatase () YP_001558255.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: cth:Cthe_1516 ribosome small subunit-dependent GTPase A YP_001558256.1 PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: cpf:CPF_0770 aspartyl-tRNA synthetase YP_001558257.1 PFAM: lipolytic protein G-D-S-L family; KEGG: cth:Cthe_0797 glycoside hydrolase, family 5 YP_001558258.1 KEGG: amt:Amet_3459 hypothetical protein YP_001558259.1 KEGG: dsy:DSY1749 hypothetical protein YP_001558260.1 KEGG: amt:Amet_2169 hypothetical protein YP_001558261.1 PFAM: band 7 protein; KEGG: amt:Amet_2170 band 7 protein YP_001558262.1 PFAM: carbohydrate kinase FGGY; KEGG: cbe:Cbei_4452 carbohydrate kinase, FGGY YP_001558263.1 TIGRFAM: rhamnulokinase; PFAM: carbohydrate kinase FGGY; KEGG: cbe:Cbei_0445 rhamnulokinase YP_001558264.1 catalyzes the formation of L-rhamnulose from L-rhamnose YP_001558265.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_0442 helix-turn-helix-domain containing protein, AraC type YP_001558266.1 TIGRFAM: L-rhamnose 1-epimerase; PFAM: protein of unknown function DUF718; KEGG: cbe:Cbei_0452 L-rhamnose 1-epimerase YP_001558267.1 PFAM: protein of unknown function DUF77; KEGG: dsy:DSY4448 hypothetical protein YP_001558268.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY4447 hypothetical protein YP_001558269.1 PFAM: NMT1/THI5 like domain protein; KEGG: dsy:DSY4446 hypothetical protein YP_001558270.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY4445 hypothetical protein YP_001558271.1 KEGG: cac:CAC2687 RecQ protein, superfamily II DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases YP_001558272.1 PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: cpe:CPE1368 hypothetical protein YP_001558273.1 PFAM: YibE/F family protein; KEGG: ckl:CKL_1697 hypothetical protein YP_001558274.1 PFAM: nucleic acid binding OB-fold tRNA/helicase-type; SMART: Ig domain protein group 2 domain protein; KEGG: cpe:CPE1368 hypothetical protein YP_001558275.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mac:MA1701 acetyltransferase YP_001558277.1 PFAM: DNA mismatch repair protein MutS domain protein; KEGG: cpr:CPR_0886 MutS domain V protein YP_001558278.1 KEGG: cpf:CPF_1453 heavy-metal-associated domain protein YP_001558279.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: cbf:CLI_1767 cold shock protein YP_001558280.1 PFAM: glycoside hydrolase family 5; KEGG: cth:Cthe_2872 glycoside hydrolase, family 5 YP_001558281.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate YP_001558282.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: cpr:CPR_0474 transcriptional regulator, AraC family YP_001558283.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cbe:Cbei_4420 UDP-glucose 4-epimerase YP_001558284.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism YP_001558285.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_2943 helix-turn-helix-domain containing protein, AraC type YP_001558286.1 PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: gtn:GTNG_1791 alpha-L-arabinofuranosidase YP_001558289.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_4466 methyl-accepting chemotaxis sensory transducer YP_001558291.1 KEGG: cno:NT01CX_0498 pyruvate formate-lyase; TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL YP_001558292.1 KEGG: cno:NT01CX_0497 pyruvate formate-lyase; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein YP_001558293.1 PFAM: microcompartments protein; KEGG: ckl:CKL_3417 hypothetical protein YP_001558294.1 PFAM: class II aldolase/adducin family protein; KEGG: cpf:CPF_1051 L-fuculose phosphate aldolase YP_001558295.1 PFAM: Aldehyde Dehydrogenase_; KEGG: rru:Rru_A0914 aldehyde dehydrogenase YP_001558296.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ooe:OEOE_0394 threonine dehydrogenase or related Zn-dependent dehydrogenase YP_001558297.1 PFAM: microcompartments protein; KEGG: spc:Sputcn32_0210 microcompartments protein YP_001558298.1 PFAM: microcompartments protein; KEGG: aha:AHA_1336 bacterial microcompartments family protein YP_001558299.1 PFAM: microcompartments protein; KEGG: ckl:CKL_1072 predicted microcompartment protein YP_001558300.1 PFAM: Propanediol utilization protein; KEGG: tma:TM0375 hypothetical protein YP_001558301.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: lwe:lwe1121 ethanolamine and carbon dioxide metabolism YP_001558302.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: ecw:EcE24377A_2294 propanediol utilization protein PduS YP_001558303.1 PFAM: microcompartments protein; KEGG: drm:Dred_3269 microcompartments protein YP_001558304.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: cbe:Cbei_0453 transcriptional regulator, DeoR family YP_001558305.1 PFAM: TPR repeat-containing protein; peptidase S41; RDD domain containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cth:Cthe_2680 peptidase S41 YP_001558306.1 PFAM: peptidase domain protein YP_001558307.1 KEGG: dsy:DSY0345 hypothetical protein YP_001558308.1 PFAM: iron dependent repressor; KEGG: cbe:Cbei_3088 iron dependent repressor YP_001558309.1 PFAM: FeoA family protein; KEGG: cbe:Cbei_4198 FeoA family protein YP_001558310.1 PFAM: FeoA family protein; KEGG: cbe:Cbei_4197 FeoA family protein YP_001558311.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: dsy:DSY2320 ferrous iron transport protein B YP_001558312.1 KEGG: spe:Spro_1236 ferric uptake regulator, Fur family YP_001558313.1 KEGG: cbe:Cbei_3087 hypothetical protein YP_001558314.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cno:NT01CX_0071 D-alanyl-D-alanine carboxypeptidase YP_001558315.1 KEGG: bca:BCE_5388 hypothetical protein YP_001558316.1 KEGG: mma:MM_0768 glycosyltransferase YP_001558318.1 KEGG: spd:SPD_0319 undecaprenylphosphate glucosephosphotransferase Cps2E; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase YP_001558319.1 PFAM: Oligosaccharide biosynthesis protein Alg14 like; KEGG: cth:Cthe_1360 polysaccharide biosynthesis protein CpsF YP_001558320.1 PFAM: Glycosyltransferase 28 domain; KEGG: cth:Cthe_1359 glycosyltransferase 28-like protein YP_001558321.1 PFAM: glycosyl transferase group 1; KEGG: cth:Cthe_1357 glycosyl transferase, group 1 YP_001558322.1 KEGG: cth:Cthe_1356 glycosyltransferase YP_001558323.1 PFAM: glycosyl transferase group 1; KEGG: cth:Cthe_1357 glycosyl transferase, group 1 YP_001558324.1 KEGG: pdi:BDI_0432 hexapeptide transferase family protein YP_001558325.1 PFAM: O-antigen polymerase; KEGG: bca:BCE_5389 O-antigen polymerase (wzy) YP_001558326.1 PFAM: polysaccharide biosynthesis protein; KEGG: gvi:gll3709 polysaccharide transporter, PST family YP_001558327.1 KEGG: drm:Dred_3027 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_001558328.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mla:Mlab_0897 hypothetical protein YP_001558329.1 PFAM: PHP domain protein; KEGG: ssa:SSA_2224 phosphotyrosine-protein phosphatase YP_001558330.1 KEGG: cth:Cthe_1363 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein YP_001558331.1 KEGG: oih:OB0250 hypothetical protein YP_001558332.1 KEGG: amt:Amet_1520 hypothetical protein YP_001558333.1 KEGG: cbe:Cbei_2367 ribose 5-phosphate isomerase YP_001558334.1 KEGG: bxe:Bxe_A3319 hypothetical protein YP_001558335.1 PFAM: DNA mismatch repair protein MutS domain protein; SMART: MutS III domain protein; KEGG: cbe:Cbei_2115 DNA mismatch repair protein MutS domain protein YP_001558336.1 KEGG: amt:Amet_3796 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel YP_001558337.1 KEGG: mac:MA4292 cell surface protein YP_001558338.1 KEGG: pfa:PFE0325w hypothetical protein YP_001558339.1 SMART: AAA ATPase; KEGG: sun:SUN_1058 hypothetical protein YP_001558340.1 PFAM: ABC-2 type transporter; KEGG: tde:TDE0696 membrane protein YP_001558341.1 PFAM: ABC-2 type transporter; KEGG: blo:BL0900 hypothetical protein YP_001558342.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_1042 probable ATP binding protein of ABC transporter YP_001558343.1 TIGRFAM: methyltransferase; KEGG: oih:OB1239 hypothetical protein YP_001558344.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cbh:CLC_0782 cystathionine beta-lyase YP_001558345.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cth:Cthe_1560 pyridoxal-5'-phosphate-dependent enzyme, beta subunit YP_001558346.1 PFAM: regulatory protein MarR; regulatory protein LysR; KEGG: swo:Swol_0935 LysR-type transcriptional regulator YP_001558347.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: efa:EF2082 ABC transporter, ATP-binding protein YP_001558348.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_3893 binding-protein-dependent transport systems inner membrane component YP_001558349.1 TIGRFAM: L-lactate dehydrogenase; PFAM: UBA/THIF-type NAD/FAD binding protein; Lactate/malate dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase; KEGG: cbe:Cbei_2789 L-lactate dehydrogenase YP_001558350.1 PFAM: NLPA lipoprotein; KEGG: efa:EF2080 lipoprotein, YaeC family YP_001558351.1 PFAM: FAD linked oxidase domain protein; KEGG: cno:NT01CX_1612 glycolate oxidase, subunit GlcD YP_001558352.1 PFAM: aminotransferase class I and II; KEGG: cth:Cthe_2793 aminotransferase, class I and II YP_001558353.1 TIGRFAM: metal dependent phophohydrolase; KEGG: cbh:CLC_0680 HDIG domain protein YP_001558354.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_3147 ABC transporter related protein YP_001558355.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_3148 ABC transporter related protein YP_001558356.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: tde:TDE0148 histidine kinase-related ATPase YP_001558357.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: tde:TDE0149 DNA-binding response regulator YP_001558358.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ckl:CKL_3394 hypothetical protein YP_001558359.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cdf:CD1960 two-component sensor histidine kinase YP_001558360.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spj:MGAS2096_Spy1111 ABC transporter ATP-binding protein YP_001558361.1 PFAM: protein of unknown function DUF214; KEGG: cdf:CD2533 ABC transporter, permease YP_001558362.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: ctc:CTC00578 exonuclease sbcD YP_001558363.1 PFAM: SMC domain protein; KEGG: ctc:CTC00579 exonuclease sbcC YP_001558364.1 KEGG: cac:CAC2572 possible aminoglycoside phosphotransferase (protein kinase related), diverged YP_001558365.1 involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme YP_001558366.1 catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance YP_001558367.1 PFAM: Phosphoglycerate mutase; KEGG: pth:PTH_1315 fructose-2,6-bisphosphatase YP_001558368.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; KEGG: cpf:CPF_0719 HAD hydrolase, IIB family YP_001558369.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: msi:Msm_0152 Na+-driven multidrug efflux pump (MATE family), NorM YP_001558370.1 PFAM: metallophosphoesterase; KEGG: bcl:ABC0966 nucleotidase YP_001558371.1 PFAM: lipolytic protein G-D-S-L family; KEGG: cth:Cthe_0797 glycoside hydrolase, family 5 YP_001558372.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cno:NT01CX_0653 peptidyl-prolyl cis-trans isomerase YP_001558373.1 PFAM: protein of unknown function DUF1063; KEGG: tde:TDE2144 hypothetical protein YP_001558374.1 PFAM: Extracellular ligand-binding receptor; KEGG: amt:Amet_4119 extracellular ligand-binding receptor YP_001558375.1 PFAM: inner-membrane translocator; KEGG: amt:Amet_4118 inner-membrane translocator YP_001558376.1 PFAM: inner-membrane translocator; KEGG: amt:Amet_4117 inner-membrane translocator YP_001558377.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4116 ABC transporter related YP_001558378.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4115 ABC transporter related YP_001558379.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase YP_001558380.1 TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: amt:Amet_4113 dihydroxyacetone kinase, L subunit YP_001558381.1 KEGG: amt:Amet_4120 hypothetical protein YP_001558382.1 PFAM: helix-turn-helix Fis-type; Resolvase helix-turn-helix domain protein; KEGG: amt:Amet_4111 sigma54 specific transcriptional regulator, Fis family YP_001558387.1 PFAM: transcriptional regulator PadR family protein; KEGG: tde:TDE1858 transcriptional regulator, PadR family YP_001558388.1 KEGG: tde:TDE1860 hypothetical protein YP_001558389.1 KEGG: tde:TDE1862 hypothetical protein YP_001558390.1 PFAM: PspC domain protein; KEGG: cac:CAC2659 stress-responsive transcriptional regulator PspC YP_001558391.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001558392.1 PFAM: protein of unknown function DUF815; SMART: AAA ATPase; KEGG: mst:Msp_1313 predicted ATPase YP_001558393.1 KEGG: pna:Pnap_3735 hypothetical protein YP_001558394.1 KEGG: cbe:Cbei_2068 glutaredoxin-like protein YP_001558395.1 KEGG: pth:PTH_2361 predicted secreted protein YP_001558396.1 PFAM: regulatory protein GntR HTH; KEGG: drm:Dred_1515 regulatory protein GntR, HTH YP_001558397.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbf:CLI_0638 ABC transporter, ATP-binding protein YP_001558398.1 KEGG: cno:NT01CX_0786 hypothetical protein YP_001558400.1 PFAM: conserved hypothetical protein; KEGG: dsy:DSY4682 hypothetical protein YP_001558401.1 KEGG: gtn:GTNG_1989 hypothetical protein YP_001558403.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity YP_001558404.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bca:BCE_2749 transcription response regulator-like protein YP_001558405.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: efa:EF2298 sensor histidine kinase VanSB YP_001558406.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lme:LEUM_0415 ABC-type multidrug transport system, ATPase component YP_001558407.1 PFAM: ABC-2 type transporter; KEGG: lme:LEUM_0416 hypothetical protein YP_001558408.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bpu:BPUM_0138 ribosomal protein acetyltransferase YP_001558409.1 KEGG: bsu:BG12539 hypothetical protein YP_001558410.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cbe:Cbei_0517 transcriptional regulator, LysR family YP_001558411.1 PFAM: nitroreductase; KEGG: cac:CAC1551 nitroreductase family protein YP_001558413.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: dsy:DSY1235 hypothetical protein YP_001558414.1 PFAM: regulatory protein GntR HTH; KEGG: dsy:DSY1236 hypothetical protein YP_001558415.1 KEGG: bce:BC3450 hypothetical membrane spanning protein YP_001558416.1 PFAM: cyclic nucleotide-binding; KEGG: cbh:CLC_1580 cyclic nucleotide-binding domain protein YP_001558417.1 PFAM: Pectinesterase; KEGG: cac:CAC3373 pectin methylesterase YP_001558418.1 PFAM: RNA methylase; KEGG: rca:Rcas_2582 RNA methylase YP_001558419.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues YP_001558420.1 KEGG: pla:Plav_0415 hypothetical protein YP_001558421.1 KEGG: ssv:SSU98_0050 hypothetical protein YP_001558422.1 KEGG: cbf:CLI_0627 hypothetical protein YP_001558423.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: cth:Cthe_3110 UBA/ThiF-type NAD/FAD binding fold YP_001558424.1 PFAM: APHP domain protein; KEGG: fjo:Fjoh_3203 Ig domain protein, group 2 domain protein YP_001558425.1 PFAM: Vitamin B12 dependent methionine synthase activation region; KEGG: amt:Amet_3374 vitamin B12 dependent methionine synthase, activation region YP_001558426.1 PFAM: YhhN family protein; KEGG: tme:Tmel_1642 YhhN family protein YP_001558427.1 PFAM: protein of unknown function DUF523; KEGG: cac:CAC2339 uncharacterized protein, YBBK B.subtilis ortholog YP_001558428.1 PFAM: protein of unknown function DUF45; KEGG: cpf:CPF_0800 hypothetical protein YP_001558429.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cbe:Cbei_0309 GntR domain protein YP_001558430.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein YP_001558431.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: cbe:Cbei_0310 electron transfer flavoprotein, alpha/beta-subunit-like protein YP_001558432.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: cbe:Cbei_0311 electron transfer flavoprotein, alpha subunit-like protein YP_001558433.1 PFAM: FAD linked oxidase domain protein; KEGG: cbe:Cbei_0312 FAD linked oxidase domain protein YP_001558434.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_2056 MATE efflux family protein YP_001558436.1 PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cbf:CLI_2367 small, acid-soluble spore protein YP_001558437.1 TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein; KEGG: cdf:CD2559 hypothetical protein YP_001558438.1 KEGG: tte:TTE1486 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_001558439.1 KEGG: tte:TTE1485 archaeal/vacuolar-type H+-ATPase subunit H YP_001558440.1 PFAM: nucleoside recognition domain protein; KEGG: tte:TTE1484 hypothetical protein YP_001558441.1 PFAM: protein of unknown function DUF795; KEGG: amt:Amet_2764 protein of unknown function DUF795 YP_001558442.1 KEGG: cth:Cthe_1029 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase YP_001558443.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_001558444.1 PFAM: protein of unknown function DUF177; KEGG: cac:CAC1744 predicted Zn-finger-like protein, possible nucleic acid binding YP_001558445.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: chy:CHY_1453 ribosomal protein L32 YP_001558446.1 KEGG: cac:CAC0978 possible elongation subunit of DNA-dependent DNA polymerase YP_001558447.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: dsy:DSY4076 hypothetical protein YP_001558448.1 KEGG: cth:Cthe_2247 regulatory protein, MerR YP_001558449.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_001558450.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001558451.1 PFAM: protein of unknown function DUF710; KEGG: cth:Cthe_2088 protein of unknown function DUF710 YP_001558452.1 PFAM: peptidase U32; KEGG: ctc:CTC02275 protease YP_001558453.1 PFAM: cell cycle protein; penicillin-binding protein transpeptidase; KEGG: ckl:CKL_3568 predicted peptidoglycan synthetase YP_001558454.1 PFAM: NUDIX hydrolase; KEGG: cdf:CD3398 DNA repair protein (nucleotide pyrophosphatase) YP_001558456.1 KEGG: cbf:CLI_0911 hypothetical protein YP_001558457.1 KEGG: cth:Cthe_0851 hypothetical protein YP_001558458.1 PFAM: GtrA family protein; KEGG: ldb:Ldb1931 teichoic acid glycosylation protein YP_001558459.1 PFAM: RNA methylase; protein of unknown function Met10; KEGG: cpr:CPR_2555 methyltransferase YP_001558460.1 KEGG: cth:Cthe_0634 serine/threonine protein kinase YP_001558461.1 PFAM: prephenate dehydratase; Chorismate mutase; KEGG: ckl:CKL_0789 PheA YP_001558462.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: bld:BLi01390 serine protease Do (heat-shock protein); RBL00645 YP_001558463.1 PFAM: NMT1/THI5 like domain protein; KEGG: cth:Cthe_2575 hypothetical protein YP_001558464.1 PFAM: protein of unknown function DUF970; KEGG: cpr:CPR_2445 hypothetical protein YP_001558465.1 PFAM: acyltransferase 3; KEGG: ckl:CKL_3622 hypothetical protein YP_001558467.1 PFAM: UvrD/REP helicase; KEGG: cth:Cthe_2876 ATP-dependent DNA helicase PcrA YP_001558468.1 PFAM: Domain of unknown function DUF1836; KEGG: cbf:CLI_1672 hypothetical protein YP_001558469.1 TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor; KEGG: tte:TTE0603 hypothetical protein YP_001558470.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: methyltransferase small; (Uracil-5)-methyltransferase; KEGG: amt:Amet_3671 RNA methyltransferase, TrmA family YP_001558471.1 PFAM: beta-lactamase domain protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mbu:Mbur_2318 tetratricopeptide protein YP_001558472.1 KEGG: sma:SAV1809 dipeptidase YP_001558473.1 PFAM: regulatory protein ArsR; KEGG: dsy:DSY1048 hypothetical protein YP_001558474.1 KEGG: dsy:DSY1049 hypothetical protein YP_001558475.1 KEGG: dsy:DSY3684 hypothetical protein YP_001558476.1 PFAM: protein of unknown function DUF214; KEGG: lmf:LMOf2365_1233 ABC transporter, permease YP_001558477.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC0822 ABC transporter, ATP-binding protein YP_001558478.1 PFAM: regulatory protein TetR; KEGG: cbe:Cbei_3107 transcriptional regulator, TetR family YP_001558479.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: cbh:CLC_0313 RibD domain protein YP_001558480.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mst:Msp_0678 predicted cation transport ATPase YP_001558481.1 PFAM: regulatory protein TetR; KEGG: sgo:SGO_0088 transcription regulator, AcrR family YP_001558482.1 KEGG: cth:Cthe_2525 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like YP_001558483.1 TIGRFAM: siroheme synthase; KEGG: cth:Cthe_2526 precorrin-2 oxidase / ferrochelatase YP_001558484.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_001558485.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: cth:Cthe_2528 uroporphyrin-III C-methyltransferase YP_001558486.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001558487.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_001558488.1 TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: amt:Amet_0070 cobalamin biosynthesis protein CbiD YP_001558489.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ckl:CKL_0727 CbiL YP_001558490.1 KEGG: lmf:LMOf2365_1206 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_001558491.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: tde:TDE0615 cobalamin biosynthesis protein CbiG YP_001558492.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mta:Moth_1094 precorrin-3B C17-methyltransferase YP_001558493.1 TIGRFAM: precorrin-6x reductase; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Precorrin-6x reductase CbiJ/CobK; KEGG: ctc:CTC00734 precorrin-6B methylase/decarboxylase cbiT/cbiE YP_001558494.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: tte:TTE0375 Cobyrinic acid a,c-diamide synthase YP_001558495.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: cbe:Cbei_1263 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_001558496.1 PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: amt:Amet_0069 precorrin-8X methylmutase CbiC/CobH YP_001558497.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cbe:Cbei_3712 cobalt ABC transporter, inner membrane subunit CbiQ YP_001558498.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3711 ABC transporter related YP_001558499.1 TIGRFAM: cobalamin biosynthesis protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: cbe:Cbei_3710 cobalamin biosynthesis protein CbiM YP_001558500.1 PFAM: Cobalt transport protein CbiN; KEGG: cbe:Cbei_3709 cobalt/cobalamin transport protein CbiN YP_001558501.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; anaerobic cobalt chelatase; KEGG: cno:NT01CX_0573 anaerobic cobalt chelatase YP_001558502.1 KEGG: ddi:DDBDRAFT_0218024 hypothetical protein YP_001558504.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lin:lin0218 similar to sugar ABC transporters, permeases YP_001558505.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00317 probable sugar ABC transporter, permease YP_001558506.1 PFAM: extracellular solute-binding protein family 1; KEGG: cpe:CPE0371 conserved hypothetical protein YP_001558507.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cbe:Cbei_1382 histidine kinase internal region YP_001558508.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cpf:CPF_2344 DNA-binding response regulator, AraC family YP_001558509.1 KEGG: afm:AFUA_3G12590 conserved hypothetical protein YP_001558510.1 PFAM: sodium:dicarboxylate symporter; KEGG: cpr:CPR_1019 sodium:dicarboxylate symporter family protein YP_001558513.1 KEGG: csc:Csac_2163 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein YP_001558514.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbf:CLI_2651 acetyltransferase, GNAT family YP_001558516.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bce:BC2431 PhnB protein YP_001558517.1 PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: oih:OB0252 oxidoreductase YP_001558518.1 KEGG: cbf:CLI_3543 flavoredoxin YP_001558519.1 PFAM: helix-turn-helix HxlR type; KEGG: cbf:CLI_3542 transcriptional regulator YP_001558520.1 KEGG: cpr:CPR_0884 hypothetical protein YP_001558522.1 KEGG: sep:SE0117 ABC transporter (ATP-binding protein) YP_001558523.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dsy:DSY4360 hypothetical protein YP_001558524.1 PFAM: regulatory protein MerR; KEGG: cbf:CLI_2168 transcriptional regulator, MerR family YP_001558525.1 PFAM: microcompartments protein; KEGG: cbf:CLI_2149 bacterial microcompartments family protein YP_001558526.1 KEGG: amt:Amet_3840 membrane spanning protein YP_001558527.1 KEGG: dde:Dde_3289 hypothetical protein YP_001558528.1 PFAM: microcompartments protein; KEGG: cbf:CLI_2164 bacterial microcompartments family protein YP_001558529.1 PFAM: microcompartments protein; KEGG: amt:Amet_3837 microcompartments protein YP_001558530.1 KEGG: cbh:CLC_2061 aldehyde dehydrogenase family protein YP_001558531.1 PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; KEGG: cbf:CLI_2161 formate acetyltransferase YP_001558532.1 KEGG: cbh:CLC_2059 glycyl-radical enzyme activating family protein; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Radical SAM domain protein YP_001558533.1 PFAM: microcompartments protein; KEGG: ctc:CTC01447 ethanolamine utilization protein eutS YP_001558534.1 KEGG: cbh:CLC_2057 GTP-binding protein, EutP/PduV family YP_001558535.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: ctc:CTC02182 alcetaldehyde dehydrogenase or NADPH-dependent butanol dehydrogenase YP_001558536.1 KEGG: cbh:CLC_2056 hypothetical protein YP_001558537.1 TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: cbh:CLC_2055 ethanolamine utilization protein EutJ family protein YP_001558538.1 PFAM: microcompartments protein; KEGG: drm:Dred_3272 microcompartments protein YP_001558539.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cbh:CLC_2053 polyhedral organelle formation protein YP_001558540.1 PFAM: protein of unknown function DUF861 cupin_3; Ethanolamine utilisation EutQ family protein; Cupin 2 conserved barrel domain protein; KEGG: cbf:CLI_2153 ethanolamine utilization protein EutQ-like protein YP_001558541.1 PFAM: microcompartments protein; KEGG: cbh:CLC_2051 bacterial microcompartments family protein YP_001558542.1 TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: cbh:CLC_2050 acetaldehyde dehydrogenase (acetylating) YP_001558543.1 PFAM: Propanediol utilization protein; KEGG: cbf:CLI_2150 propanediol utilization protein PduL-like protein YP_001558544.1 PFAM: microcompartments protein; KEGG: cbf:CLI_2149 bacterial microcompartments family protein YP_001558546.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ckl:CKL_0584 hypothetical protein YP_001558547.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: bce:BC2182 histidinol-phosphatase YP_001558548.1 PFAM: protein of unknown function DUF1349; KEGG: sma:SAV6390 hypothetical protein YP_001558549.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cbe:Cbei_3373 peptidoglycan-binding domain 1 protein YP_001558552.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein YP_001558553.1 PFAM: transposase IS4 family protein; KEGG: cpr:CPR_0485 ISCpe5, transposase YP_001558554.1 PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: dsy:DSY4643 hypothetical protein YP_001558555.1 PFAM: protein of unknown function DUF1349; KEGG: sco:SCO1870 hypothetical protein YP_001558556.1 KEGG: bca:BCE_2511 ABC transporter, permease YP_001558557.1 PFAM: protein of unknown function DUF214; KEGG: bcz:BCZK2228 ABC transporter, permease YP_001558558.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: btl:BALH_2221 ABC transporter, ATP-binding protein YP_001558559.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: cbf:CLI_2079 transcriptional regulator, GntR family/aminotransferase, classes I and II YP_001558560.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cbh:CLC_1960 hypothetical protein YP_001558561.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: llm:llmg_0312 phosphonate ABC transporter, phosphonate-binding protein PhnD YP_001558562.1 KEGG: lla:L97415 phosphonate ABC transporter ATP-binding protein; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001558563.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_0314 phosphonate transport system permease PhnB YP_001558564.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_0315 phosphonate ABC transporter permease YP_001558565.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: bcy:Bcer98_2341 5'-nucleotidase domain protein YP_001558566.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: tte:TTE0993 Glycerophosphoryl diester phosphodiesterase YP_001558567.1 PFAM: regulatory protein LacI; KEGG: cpf:CPF_1547 transcriptional regulator, LacI family YP_001558568.1 KEGG: dsy:DSY1960 hypothetical protein YP_001558569.1 KEGG: mbb:BCG_2012 hypothetical protein YP_001558570.1 PFAM: beta-lactamase; KEGG: ckl:CKL_0345 predicted peptidoglycan biosynthesis protein YP_001558571.1 PFAM: regulatory protein MerR; KEGG: cpr:CPR_0445 transcriptional regulator, MerR family YP_001558572.1 KEGG: amt:Amet_2318 L-serine dehydratase, iron-sulfur-dependent, alpha subunit; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: serine dehydratase alpha chain YP_001558573.1 TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: amino acid-binding ACT domain protein; serine dehydratase beta chain; KEGG: tte:TTE1008 L-serine deaminase YP_001558574.1 PFAM: sodium:dicarboxylate symporter; KEGG: cdf:CD2693 sodium:dicarboxylate symporter YP_001558575.1 KEGG: cbe:Cbei_0358 hypothetical protein YP_001558576.1 PFAM: GTPase EngC; KEGG: cdf:CD3368A hypothetical protein YP_001558577.1 PFAM: carbonic anhydrase; KEGG: bvu:BVU_0341 hypothetical protein YP_001558578.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ckl:CKL_0436 SerA YP_001558579.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cbe:Cbei_1804 integral membrane sensor signal transduction histidine kinase YP_001558580.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: chy:CHY_0092 DNA-binding response regulator YP_001558581.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afu:AF1136 ABC-2 type transport system ATP-binding protein YP_001558582.1 PFAM: ABC-2 type transporter; KEGG: cbe:Cbei_3825 ABC transporter permease YP_001558584.1 PFAM: protein of unknown function DUF347; KEGG: rha:RHA1_ro08567 hypothetical protein YP_001558585.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_3990 transcription activator, effector binding YP_001558586.1 PFAM: esterase; KEGG: sru:SRU_2005 esterase superfamily YP_001558587.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_3119 methyl-accepting chemotaxis sensory transducer YP_001558588.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: cbf:CLI_1602 C4-dicarboxylate transporter/malic acid transport protein YP_001558589.1 TIGRFAM: C_GCAxxG_C_C family protein; KEGG: cdf:CD3018 hypothetical protein YP_001558590.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cdf:CD1079 LysR-family transcriptional regulator YP_001558591.1 PFAM: molybdopterin binding domain; KEGG: cbe:Cbei_1988 molybdopterin binding domain YP_001558592.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: cpf:CPF_2340 molybdenum cofactor biosynthesis protein C YP_001558593.1 KEGG: cbe:Cbei_1989 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001558594.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MOSC domain containing protein; KEGG: cpr:CPR_2055 molybdenum cofactor synthesis protein YP_001558595.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: efa:EF1397 molybdenum ABC transporter, molybdenum-binding protein YP_001558596.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msi:Msm_1610 molybdate ABC transporter, permease component, ModC YP_001558597.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msi:Msm_1611 molybdate ABC transporter, ATPase component YP_001558598.1 PFAM: protein of unknown function DUF182; KEGG: dsy:DSY0877 hypothetical protein YP_001558599.1 KEGG: dsy:DSY4694 hypothetical protein; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein domain protein YP_001558600.1 PFAM: SirA family protein; KEGG: cdf:CD3667 hypothetical protein YP_001558601.1 KEGG: cbh:CLC_2789 hypothetical protein YP_001558602.1 KEGG: tte:TTE2789 selenocysteine lyase; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; glycine hydroxymethyltransferase YP_001558604.1 KEGG: tva:TVAG_164520 conserved hypothetical protein YP_001558605.1 PFAM: YheO domain protein; KEGG: efa:EF0096 hypothetical protein YP_001558606.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: cbe:Cbei_0471 endoribonuclease L-PSP YP_001558607.1 in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS YP_001558608.1 KEGG: efa:EF2581 oxidoreductase, pyridine nucleotide-disulfide family YP_001558609.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_001558610.1 TIGRFAM: selenium-dependent molybdenum hydroxylase 1; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: cbe:Cbei_1982 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding YP_001558611.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: efa:EF2573 xanthine/uracil permease family protein YP_001558612.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate YP_001558613.1 Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases YP_001558614.1 PFAM: D-aminoacylase domain protein; Amidohydrolase 3; KEGG: drm:Dred_0263 N-acyl-D-amino-acid deacylase YP_001558615.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: bfr:BF3573 peptide methionine sulfoxide reductase YP_001558616.1 PFAM: glucose-inhibited division protein A; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cth:Cthe_1945 thioredoxin-disulfide reductase YP_001558617.1 PFAM: protein of unknown function DUF1576; KEGG: amt:Amet_4320 protein of unknown function DUF1576 YP_001558618.1 KEGG: amt:Amet_4319 hypothetical protein YP_001558619.1 PFAM: NUDIX hydrolase; KEGG: mma:MM_2810 hypothetical protein YP_001558620.1 PFAM: protein of unknown function DUF74; KEGG: ckl:CKL_2433 hypothetical protein YP_001558621.1 KEGG: cbe:Cbei_1845 hypothetical protein YP_001558622.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cac:CAC0760 uncharacterized conserved protein, YTFE family, possibly metal-binding YP_001558623.1 PFAM: glycoside hydrolase family 10; KEGG: cth:Cthe_0912 glycoside hydrolase, family 10 YP_001558624.1 KEGG: lme:LEUM_1913 hypothetical protein YP_001558625.1 PFAM: Rhomboid family protein; KEGG: cth:Cthe_0259 rhomboid-like protein YP_001558626.1 PFAM: regulatory protein TetR; KEGG: cac:CAC1668 transcriptional regulator, AcrR family YP_001558627.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tte:TTE2131 NADH:flavin oxidoreductase, Old Yellow enzyme family YP_001558628.1 KEGG: cbe:Cbei_4414 hypothetical protein YP_001558629.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: cdf:CD2101 FAD-binding subunit of oxidoreductase YP_001558630.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: drm:Dred_2775 (2Fe-2S)-binding domain protein YP_001558631.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: drm:Dred_2776 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding YP_001558632.1 KEGG: sso:SSO2432 hypothetical protein YP_001558633.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: tte:TTE0448 methyl-accepting chemotaxis protein YP_001558634.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_001558635.1 KEGG: cbe:Cbei_3840 hypothetical protein YP_001558636.1 KEGG: ngo:NGO0355 hypothetical protein YP_001558637.1 KEGG: btl:BALH_1616 hypothetical protein YP_001558639.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rca:Rcas_2701 GCN5-related N-acetyltransferase YP_001558640.1 PFAM: GCN5-related N-acetyltransferase; KEGG: llm:llmg_1669 acetyltransferase YP_001558641.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_4840 helix-turn-helix-domain containing protein, AraC type YP_001558642.1 PFAM: extracellular solute-binding protein family 1; KEGG: cbe:Cbei_4680 extracellular solute-binding protein, family 1 YP_001558643.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2543 binding-protein-dependent transport systems inner membrane component YP_001558644.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2542 binding-protein-dependent transport systems inner membrane component YP_001558645.1 PFAM: Domain of unknown function DUF1801; KEGG: rci:RCIX1712 hypothetical protein YP_001558646.1 KEGG: cdf:CD2540 NADH oxidase YP_001558647.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: lca:LSEI_2779 metal-dependent hydrolase YP_001558648.1 KEGG: amt:Amet_1714 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase YP_001558649.1 PFAM: NUDIX hydrolase; GCN5-related N-acetyltransferase; KEGG: dsy:DSY4332 hypothetical protein YP_001558650.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ctc:CTC00693 conserved protein, endonuclease-like YP_001558651.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: ckl:CKL_1774 GcvT YP_001558652.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_001558653.1 PFAM: glycine cleavage system P-protein; KEGG: ckl:CKL_1772 GcvPA YP_001558654.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_001558655.1 TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: ckl:CKL_1770 LplA YP_001558656.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: ckl:CKL_1769 BfmBC YP_001558657.1 SMART: helicase c2; KEGG: amt:Amet_3769 helicase C2 YP_001558658.1 PFAM: protein of unknown function DUF503; KEGG: cbf:CLI_2969 hypothetical protein YP_001558659.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_1324 transcriptional regulator YP_001558660.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_1357 binding-protein-dependent transport systems inner membrane component YP_001558661.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2553 binding-protein-dependent transport systems inner membrane component YP_001558662.1 KEGG: efa:EF1234 ABC transporter, substrate-binding protein YP_001558663.1 KEGG: llm:llmg_1837 hypothetical protein YP_001558664.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: det:DET0533 HAD-superfamily hydrolase, subfamily IA YP_001558665.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: ckl:CKL_0346 hypothetical protein YP_001558666.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dsy:DSY1868 hypothetical protein YP_001558667.1 PFAM: helix-turn-helix domain protein; KEGG: bcy:Bcer98_3869 helix-turn-helix domain protein YP_001558668.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: surface protein from Gram-positive cocci anchor region; Cna B domain protein; Collagen binding domain protein; KEGG: bha:BH2014 hypothetical protein YP_001558669.1 PFAM: transglutaminase domain protein; KEGG: cno:NT01CX_0209 transglutaminase-like enzyme, cysteine protease YP_001558670.1 KEGG: dsy:DSY0637 hypothetical protein YP_001558671.1 PFAM: DegV family protein; KEGG: dsy:DSY0636 hypothetical protein YP_001558673.1 KEGG: spj:MGAS2096_Spy1119 hypothetical protein YP_001558674.1 PFAM: regulatory protein GntR HTH; KEGG: chy:CHY_0434 transcriptional regulator, GntR family YP_001558675.1 KEGG: cbf:CLI_0519 hypothetical protein YP_001558676.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: cbh:CLC_0506 hydrogenase accessory protein HypB YP_001558677.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbo:CBO0432 pyridine nucleotide-disulphide oxidoreductase YP_001558678.1 PFAM: hydrogenase expression/synthesis HypA; KEGG: cbf:CLI_0518 hydrogenase nickel insertion protein HypA YP_001558679.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cdf:CD1659 probable cation-transporting ATPase YP_001558680.1 KEGG: cno:NT01CX_2046 hypothetical protein YP_001558681.1 PFAM: protein of unknown function DUF328; KEGG: ppe:PEPE_1842 hypothetical protein YP_001558682.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cdf:CD1822 thiol peroxidase (bacterioferritin comigratory protein) YP_001558683.1 PFAM: Ferritin Dps family protein; KEGG: dsy:DSY1172 hypothetical protein YP_001558684.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cac:CAC3245 subtilisin like protease (two fused domains) YP_001558685.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpf:CPF_2368 subtilase family protein YP_001558686.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: ctc:CTC02345 serine-type protease YP_001558687.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: ctc:CTC02345 serine-type protease YP_001558688.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpe:CPE2561 probable Ser-type protease YP_001558689.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpr:CPR_2070 subtilase family protein YP_001558691.1 PFAM: ROK family protein; KEGG: gka:GK3204 fructokinase YP_001558692.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cdf:CD1558 RNA polymerase sigma factor YP_001558693.1 KEGG: lbu:LBUL_1746 hypothetical protein YP_001558694.1 KEGG: tte:TTE0286 periplasmic sugar-binding proteins YP_001558695.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: tte:TTE0287 predicted ATPase YP_001558696.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: tte:TTE0288 CheY-like receiver domains YP_001558697.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0289 Periplasmic sugar-binding proteins YP_001558698.1 KEGG: amt:Amet_3799 solute-binding component of ABC transporter YP_001558699.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gtn:GTNG_1800 L-arabinose transport, ATP binding protein YP_001558700.1 PFAM: inner-membrane translocator; KEGG: amt:Amet_3797 monosaccharide-transporting ATPase YP_001558701.1 PFAM: SEC-C motif domain protein; KEGG: oih:OB1032 hypothetical protein YP_001558702.1 KEGG: bce:BC0396 hypothetical protein YP_001558703.1 KEGG: bcy:Bcer98_0514 helix-turn-helix domain protein YP_001558704.1 PFAM: major facilitator superfamily MFS_1; KEGG: tme:Tmel_0369 major facilitator superfamily MFS_1 YP_001558705.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever YP_001558706.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cpf:CPF_1409 MATE efflux family protein YP_001558707.1 KEGG: pth:PTH_0265 hypothetical membrane protein YP_001558709.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: pin:Ping_2107 glycoside hydrolase, family 3 domain protein YP_001558710.1 NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate YP_001558711.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC3007 ATPase component of MDR-type ABC transporter, two ATPase domains YP_001558712.1 KEGG: tva:TVAG_216960 viral A-type inclusion protein, Pfam: NHR2 Rab5-bind BRE1 FlaC_arch Prefoldin_2 Laminin_I M EzrA IL6 DUF827 Syntaxin Erp_C HrpB7 DUF904 DUF1978 DUF972 Osmo_CC K-box bZIP_2 Fez1 Vicilin_N Apolipoprotein Spectrin Myosin_tail_1 Phage_GP20 Filament MAP65_ASE1 Tropomyosin Tup_N PspA_IM30 MAP7 PROSITE: GLU_RICH LYS_RICH GAT YP_001558713.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: cpr:CPR_0486 DNA-binding response regulator YP_001558714.1 KEGG: cpr:CPR_0487 sensor histidine kinase YP_001558715.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ckl:CKL_1537 hypothetical protein YP_001558716.1 PFAM: 4-vinyl reductase 4VR; KEGG: gur:Gura_0328 4-vinyl reductase, 4VR YP_001558717.1 PFAM: regulatory protein LuxR; KEGG: cps:CPS_1932 DNA-binding response regulator YP_001558718.1 KEGG: mba:Mbar_A0863 hypothetical protein YP_001558720.1 KEGG: cdf:CD0634 hypothetical protein YP_001558721.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: amt:Amet_1400 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001558722.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: cdf:CD1516 MerR-family transcriptional activator YP_001558723.1 PFAM: protein of unknown function DUF161; KEGG: cdf:CD1590 hypothetical protein YP_001558724.1 KEGG: cpf:CPF_1146 hypothetical protein YP_001558725.1 PFAM: Pectate lyase/Amb allergen; KEGG: cac:CAC0804 pectate lyase related protein, secreted YP_001558726.1 PFAM: regulatory protein MerR; KEGG: amt:Amet_0478 transcriptional regulator, MerR family YP_001558727.1 PFAM: glycosyl transferase family 51; KEGG: bpu:BPUM_0957 penicillin-binding protein 2C YP_001558728.1 PFAM: NUDIX hydrolase; KEGG: msi:Msm_0691 mutator MutT protein (NUDIX domain) YP_001558729.1 KEGG: mgr:MGG_03407 hypothetical protein Pfam: Glyco_hydro_67N YP_001558731.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ckl:CKL_3005 predicted transcriptional regulator YP_001558732.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ckl:CKL_3004 predicted sensory transduction histidine kinase YP_001558734.1 PFAM: protein of unknown function DUF214; KEGG: amt:Amet_4745 protein of unknown function DUF214 YP_001558735.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4744 ABC transporter related YP_001558736.1 PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; KEGG: btk:BT9727_2276 methyltransferase YP_001558737.1 PFAM: acyl-protein synthetase LuxE; KEGG: plu:plu4181 hypothetical protein YP_001558738.1 PFAM: acyl-CoA reductase; KEGG: pen:PSEEN0622 hypothetical protein YP_001558741.1 PFAM: aldo/keto reductase; KEGG: cbe:Cbei_2676 aldo/keto reductase YP_001558742.1 PFAM: protein of unknown function DUF1037; KEGG: bcl:ABC1573 trehalose utilization protein YP_001558743.1 KEGG: ctc:CTC02460 ATP-dependent DNA helicase rep YP_001558744.1 PFAM: regulatory protein TetR; KEGG: ckl:CKL_0067 hypothetical protein YP_001558745.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bld:BLi00349 ABC-2 type transport system ATP-binding protein YP_001558746.1 KEGG: bca:BCE_1989 membrane protein YP_001558747.1 PFAM: chemotaxis sensory transducer; KEGG: mag:amb3192 methyl-accepting chemotaxis protein YP_001558748.1 PFAM: protein of unknown function DUF204; KEGG: cju:C8J_0163 integral membrane protein YP_001558750.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY3742 hypothetical protein YP_001558751.1 PFAM: glycoside hydrolase family 12; KEGG: sma:SAV2571 hypothetical protein YP_001558752.1 KEGG: afw:Anae109_3838 metallophosphoesterase YP_001558753.1 KEGG: ani:AN4890.2 hypothetical protein YP_001558754.1 KEGG: tte:TTE0723 Lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_001558755.1 PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; KEGG: mxa:MXAN_4097 D-alanine-D-alanine ligase family protein YP_001558756.1 KEGG: cdf:CD3350 glycosyl transferase YP_001558757.1 KEGG: ppu:PP_1193 hypothetical protein YP_001558758.1 PFAM: protein of unknown function UPF0074; regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: cac:CAC3494 transcription regulator, YOBV B.subtilis homolog YP_001558759.1 PFAM: Domain of unknown function DUF1905; KEGG: dsy:DSY1231 hypothetical protein YP_001558760.1 KEGG: cbe:Cbei_4140 hypothetical protein YP_001558761.1 KEGG: cbf:CLI_1187 HD domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001558762.1 PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_0838 major facilitator family transporter YP_001558763.1 PFAM: glycoside hydrolase family 18; Peptidoglycan-binding LysM; SMART: chitinase II; KEGG: cno:NT01CX_1510 spore peptidogylcan hydrolase YP_001558764.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: ctc:CTC02359 hemerythrin-like domain protein DcrH YP_001558765.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: protein of unknown function Met10; conserved hypothetical protein; (Uracil-5)-methyltransferase; KEGG: cth:Cthe_1751 RNA methyltransferase, TrmA family YP_001558766.1 KEGG: ckl:CKL_0533 hypothetical protein YP_001558767.1 PFAM: DSBA oxidoreductase; KEGG: efa:EF1088 hypothetical protein YP_001558768.1 KEGG: bth:BT_2376 hypothetical protein YP_001558769.1 PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pth:PTH_2686 predicted oxidoreductases YP_001558770.1 PFAM: alpha/beta hydrolase fold; KEGG: cbf:CLI_0921 non-haem haloperoxidase family protein YP_001558771.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cbe:Cbei_3316 NADH:flavin oxidoreductase/NADH oxidase YP_001558772.1 PFAM: helix-turn-helix HxlR type; KEGG: cbe:Cbei_3137 transcriptional regulator, HxlR family YP_001558773.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3138 cupin 2, conserved barrel domain protein YP_001558774.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bld:BLi04061 YwbC YP_001558776.1 KEGG: dvl:Dvul_2626 hypothetical protein YP_001558777.1 KEGG: chy:CHY_2116 phosphate ABC transporter, ATP-binding protein PstB; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001558778.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_1610 phosphate binding protein YP_001558779.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_1611 phosphate ABC transporter, inner membrane subunit PstC YP_001558780.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_1612 phosphate ABC transporter, inner membrane subunit PstA YP_001558781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: deb:DehaBAV1_0229 phosphate ABC transporter, ATPase subunit YP_001558782.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: amt:Amet_4620 phosphate uptake regulator, PhoU YP_001558783.1 PFAM: protein of unknown function DUF985; KEGG: cbf:CLI_0821 hypothetical protein YP_001558784.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: cbf:CLI_3343 GIY-YIG domain protein YP_001558785.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tde:TDE2369 hypothetical protein YP_001558786.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cdf:CD1872 iron-sulfur-binding membrane protein YP_001558787.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC1506 response regulator (CheY-like receiver domain and a HTH) YP_001558788.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cac:CAC1507 sensory transduction histidine kinase (with HAMP domain) YP_001558790.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amt:Amet_1917 two component transcriptional regulator, winged helix family YP_001558791.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: amt:Amet_1918 integral membrane sensor signal transduction histidine kinase YP_001558792.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1261 hypothetical protein YP_001558793.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1260 hypothetical protein YP_001558794.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: amt:Amet_1428 helix-turn-helix-domain containing protein, AraC type YP_001558795.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: chu:CHU_1815 selenocysteine lyase YP_001558796.1 KEGG: chu:CHU_1814 hypothetical protein YP_001558797.1 KEGG: cbf:CLI_0723 hypothetical protein YP_001558798.1 PFAM: polysaccharide deacetylase; KEGG: sde:Sde_3061 xylanase/chitin deacetylase-like YP_001558799.1 PFAM: glycosyl hydrolase BNR repeat-containing protein; Two component regulator propeller; KEGG: sfu:Sfum_3494 hypothetical protein YP_001558800.1 PFAM: sodium/hydrogen exchanger; KEGG: cbh:CLC_2648 transporter, monovalent cation:proton antiporter-2 (CPA2) family YP_001558801.1 KEGG: cth:Cthe_1401 hypothetical protein YP_001558803.1 KEGG: cbh:CLC_0359 transcriptional regulator, AraC family YP_001558805.1 PFAM: Collagen triple helix repeat; KEGG: mlo:mlr0587 hypothetical glycine-rich protein YP_001558806.1 PFAM: glycosyl transferase family 2; KEGG: cdf:CD3350 glycosyl transferase YP_001558807.1 PFAM: regulatory protein MarR; Penicillinase repressor; KEGG: amt:Amet_1479 transcriptional regulator, TrmB YP_001558808.1 KEGG: fnu:FN1538 arsenical pump-driving ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001558809.1 PFAM: Anion-transporting ATPase; KEGG: fnu:FN1537 arsenical pump-driving ATPase YP_001558810.1 PFAM: condensation domain protein; phosphopantetheine-binding; KEGG: bbt:BBta_1089 non-ribosomal peptide synthase YP_001558811.1 KEGG: cbh:CLC_0903 non-haem haloperoxidase family protein YP_001558812.1 KEGG: spe:Spro_2493 cysteine desulfurase, SufS subfamily YP_001558814.1 KEGG: cbf:CLI_0723 hypothetical protein YP_001558815.1 KEGG: cbf:CLI_0723 hypothetical protein YP_001558817.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: csc:Csac_2727 helix-turn-helix-domain containing protein, AraC type YP_001558818.1 KEGG: ani:AN4010.2 hypothetical protein YP_001558819.1 KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein YP_001558820.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2339 ABC transporter, permease YP_001558821.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2338 ABC transporter, permease YP_001558822.1 KEGG: bvu:BVU_0121 glycoside hydrolase family 28 YP_001558823.1 KEGG: tpt:Tpet_1741 esterase/lipase-like protein YP_001558824.1 PFAM: coagulation factor 5/8 type domain protein; KEGG: mxa:MXAN_5269 S1D (lysyl endopeptidase) subfamily C-terminal domain protein YP_001558825.1 PFAM: coagulation factor 5/8 type domain protein; PKD domain containing protein; glycoside hydrolase family 85; KEGG: cpf:CPF_0285 endo-beta-N-acetylglucosaminidase YP_001558826.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2339 ABC transporter, permease YP_001558827.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_2050 sugar transport system (permease) (binding protein dependent transporter) YP_001558828.1 PFAM: extracellular solute-binding protein family 1; KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein YP_001558829.1 PFAM: glycosidase PH1107-related; KEGG: bfs:BF1316 hypothetical protein YP_001558830.1 PFAM: conserved hypothetical protein; KEGG: bha:BH0790 hypothetical protein YP_001558831.1 PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; Glycoside hydrolase family 38 central region; KEGG: gka:GK1902 alpha-D-mannosidase YP_001558832.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cpr:CPR_2057 sensor histidine kinase YP_001558833.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cpr:CPR_2056 DNA-binding response regulator, AraC family YP_001558834.1 PFAM: extracellular solute-binding protein family 1; KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein YP_001558835.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_2413 MATE efflux family protein YP_001558836.1 PFAM: Domain of unknown function DUF1801 YP_001558838.1 KEGG: cbh:CLC_0444 hypothetical protein YP_001558839.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: swo:Swol_1122 hypothetical protein YP_001558840.1 TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: mRNA capping enzyme; DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: dsy:DSY0616 hypothetical protein YP_001558841.1 PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); KEGG: cth:Cthe_3024 NADH dehydrogenase (quinone) YP_001558842.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: cth:Cthe_3023 respiratory-chain NADH dehydrogenase, subunit 1 YP_001558843.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cth:Cthe_3022 NADH ubiquinone oxidoreductase, 20 kDa subunit YP_001558844.1 KEGG: cth:Cthe_3021 Ech hydrogenase, subunit EchD YP_001558845.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: cth:Cthe_3020 NADH dehydrogenase (ubiquinone) YP_001558846.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cth:Cthe_3019 4Fe-4S ferredoxin, iron-sulfur binding YP_001558847.1 PFAM: hydrogenase expression/synthesis HypA; KEGG: cth:Cthe_3018 hydrogenase expression/synthesis, HypA YP_001558848.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: cth:Cthe_3017 hydrogenase accessory protein HypB YP_001558849.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: cth:Cthe_3016 (NiFe) hydrogenase maturation protein HypF YP_001558850.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: cth:Cthe_3015 hydrogenase assembly chaperone HypC/HupF YP_001558851.1 PFAM: hydrogenase formation HypD protein; KEGG: cth:Cthe_3014 hydrogenase formation HypD protein YP_001558852.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cth:Cthe_3013 hydrogenase expression/formation protein HypE YP_001558853.1 KEGG: cac:CA_P0121 Leu-rich protein family protein, YaeG (E.coli) homolog YP_001558854.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Acetoacetate decarboxylase; KEGG: cac:CAC1044 NADH:flavin oxidoreductase, possible NADH oxidase YP_001558855.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: drm:Dred_3003 short-chain dehydrogenase/reductase SDR YP_001558856.1 KEGG: lpf:lpl1156 methylated-DNA-[protein]-cysteine S-methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Ada metal-binding domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SMART: helix-turn-helix- domain containing protein AraC type YP_001558857.1 KEGG: cbe:Cbei_1278 hypothetical protein YP_001558858.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: bcl:ABC0752 minor extracellular serine protease YP_001558861.1 PFAM: glycosyl hydrolase family 88; KEGG: cne:CNL06720 hypothetical protein YP_001558862.1 PFAM: NADPH-dependent FMN reductase; KEGG: cbf:CLI_3546 NADPH-dependent FMN reductase YP_001558863.1 PFAM: aldo/keto reductase; KEGG: cbf:CLI_3545 oxidoreductase, aldo/keto reductase family YP_001558864.1 PFAM: aminotransferase class V; KEGG: cdf:CD3032 aminotransferase YP_001558865.1 KEGG: cdf:CD3032 aminotransferase YP_001558866.1 PFAM: regulatory protein MarR; KEGG: ctc:CTC01897 transcriptional regulator, MarR family YP_001558867.1 PFAM: cyclase family protein; KEGG: ctc:CTC01896 polyketide cyclase YP_001558868.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ckl:CKL_3374 predicted transcriptional regulator YP_001558869.1 PFAM: sodium:neurotransmitter symporter; KEGG: fnu:FN1989 sodium-dependent tyrosine transporter YP_001558870.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ctc:CTC01925 2-haloalkanoic acid dehalogenase I YP_001558871.1 KEGG: ctc:CTC01924 membrane spanning protein YP_001558872.1 PFAM: cyclic nucleotide-binding; KEGG: ctc:CTC01923 catabolite gene activator YP_001558873.1 KEGG: bha:BH0317 hypothetical protein YP_001558874.1 PFAM: FAD dependent oxidoreductase; KEGG: mhu:Mhun_2065 FAD dependent oxidoreductase YP_001558875.1 PFAM: protein of unknown function DUF1697; KEGG: det:DET1387 hypothetical protein YP_001558876.1 PFAM: isochorismatase hydrolase; KEGG: cth:Cthe_1178 isochorismatase hydrolase YP_001558877.1 PFAM: TfoX domain protein; KEGG: cbf:CLI_0805 TfoX domain protein YP_001558879.1 KEGG: cbe:Cbei_0751 PTS system, glucose subfamily, IIA subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC YP_001558880.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: blo:BL0412 histidine-containing phosphocarrier protein (Hpr protein) of Pts transport system YP_001558881.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: blo:BL0411 phosphoenolpyruvate-protein phosphotransferase YP_001558884.1 PFAM: coagulation factor 5/8 type domain protein; S-layer domain protein; KEGG: cbe:Cbei_2675 coagulation factor 5/8 type domain protein YP_001558885.1 KEGG: cbe:Cbei_2858 hypothetical protein YP_001558886.1 KEGG: swo:Swol_1838 hypothetical protein YP_001558887.1 KEGG: dsy:DSY1202 hypothetical protein YP_001558888.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; anaerobic cobalt chelatase; KEGG: tde:TDE2656 cobalt chelatase YP_001558889.1 PFAM: conserved hypothetical protein; KEGG: cbf:CLI_0435 hypothetical protein YP_001558890.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: cdf:CD1796 nitrite and sulfite reductase subunit YP_001558891.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cdf:CD1797 pyridine nucleotide-disulfide oxidoreductase YP_001558892.1 PFAM: regulatory protein MarR; regulatory protein LysR; LysR substrate-binding; KEGG: cdf:CD1798 LysR-family transcriptional regulator YP_001558893.1 KEGG: cth:Cthe_2525 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like YP_001558894.1 TIGRFAM: siroheme synthase; KEGG: cth:Cthe_2526 precorrin-2 oxidase / ferrochelatase YP_001558895.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_001558896.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: cth:Cthe_2528 uroporphyrin-III C-methyltransferase YP_001558897.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001558898.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_001558899.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: cbe:Cbei_3628 DNA binding domain, excisionase family YP_001558900.1 KEGG: btk:BT9727_2493 hypothetical protein YP_001558901.1 PFAM: extracellular solute-binding protein family 1; KEGG: pac:PPA0085 periplasmic protein YP_001558902.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cdf:CD0691 short chain dehydrogenase YP_001558904.1 PFAM: beta-lactamase domain protein; KEGG: cbe:Cbei_3495 beta-lactamase domain protein YP_001558905.1 KEGG: cno:NT01CX_1075 hypothetical protein YP_001558906.1 KEGG: cha:CHAB381_0329 mercuric transport protein periplasmic component YP_001558907.1 PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; SMART: chitinase II; KEGG: sco:SCO5003 chitinase A precursor YP_001558908.1 PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; SMART: chitinase II; KEGG: cbe:Cbei_2830 glycoside hydrolase, family 18 YP_001558909.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lwe:lwe2070 UvrABC system protein A YP_001558910.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; KEGG: blo:BL1038 possible calcium-transporting ATPase 10, plasma membrane-type YP_001558911.1 KEGG: ckl:CKL_2277 predicted transposase YP_001558912.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mba:Mbar_A2103 magnesium transport P-type atpase YP_001558913.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF1232; KEGG: ckl:CKL_1607 transcriptional regulator YP_001558914.1 TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: cbf:CLI_1148 conserved repeat domain protein YP_001558915.1 PFAM: Domain of unknown function DUF1801; KEGG: reu:Reut_B4111 hypothetical protein YP_001558916.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cac:CAC0669 hypothetical protein YP_001558917.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: tte:TTE1982 ribosomal protein L25 (general stress protein Ctc) YP_001558918.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbf:CLI_2014 MATE efflux family protein YP_001558919.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: bld:BLi03851 YwrC YP_001558920.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_001558922.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mba:Mbar_A3478 hypothetical protein YP_001558923.1 PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype; KEGG: cac:CAC3280 possible surface protein, responsible for cell interaction; contains cell adhesion domain and ChW-repeats YP_001558924.1 TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: Gluconate transporter; C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: efa:EF1920 C4-dicarboxylate anaerobic carrier YP_001558925.1 PFAM: GCN5-related N-acetyltransferase; KEGG: blo:BL1769 conserved hypothetical protein with acetyl transferase (GnaT) domain YP_001558926.1 PFAM: PfkB domain protein; KEGG: pin:Ping_0344 ribokinase YP_001558927.1 catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides YP_001558928.1 TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: blo:BL1771 C4-dicarboxylate transporter YP_001558929.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0201 Transcriptional regulator YP_001558930.1 PFAM: GCN5-related N-acetyltransferase; KEGG: esa:ESA_02128 hypothetical protein YP_001558931.1 TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor G domain IV; protein of unknown function DUF901; KEGG: cth:Cthe_0033 small GTP-binding protein YP_001558932.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: mta:Moth_1653 transcriptional regulator, BadM/Rrf2 family YP_001558933.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: dsy:DSY2948 hypothetical protein YP_001558934.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: cbe:Cbei_4194 sulfate ABC transporter, periplasmic sulfate-binding protein YP_001558935.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ckl:CKL_1802 CysT YP_001558936.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbe:Cbei_4191 sulfate ABC transporter, inner membrane subunit CysW YP_001558937.1 KEGG: cbe:Cbei_4190 sulfate ABC transporter, ATPase subunit; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001558938.1 catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite YP_001558939.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cac:CAC0105 ferredoxin YP_001558940.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_001558941.1 KEGG: cbe:Cbei_4186 sulfate adenylyltransferase, large subunit; TIGRFAM: small GTP-binding protein; sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein YP_001558943.1 KEGG: bha:BH1004 ABC-2 type transport system permease YP_001558944.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1003 ABC transporter (ATP-binding protein) YP_001558945.1 PFAM: regulatory protein TetR; KEGG: ckl:CKL_3748 transcriptional regulator YP_001558946.1 PFAM: regulatory protein TetR; KEGG: cbf:CLI_1106 transcriptional regulator, TetR family YP_001558947.1 KEGG: mst:Msp_0843 hypothetical protein YP_001558948.1 KEGG: cpf:CPF_1044 hypothetical protein YP_001558949.1 KEGG: cac:CAC0755 multimeric flavodoxin WrbA family protein, diverged or disrupted YP_001558950.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cmi:CMM_0312 acetyltransferase YP_001558951.1 PFAM: protein of unknown function DUF402; KEGG: oih:OB0349 hypothetical protein YP_001558952.1 PFAM: regulatory protein MarR; KEGG: bcz:pE33L466_0362 transcriptional regulator, MarR family YP_001558953.1 PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3058 pirin domain protein YP_001558954.1 KEGG: cpr:CPR_0953 hypothetical protein YP_001558955.1 PFAM: polysaccharide deacetylase; KEGG: cdf:CD1430 exported polysaccharide deacetylase YP_001558956.1 KEGG: cbf:CLI_2295 transcriptional regulator, MerR family YP_001558957.1 KEGG: cpf:CPF_1053 DNA-binding protein YP_001558958.1 PFAM: helix-turn-helix HxlR type; KEGG: cpr:CPR_0720 cinnamoyl ester hydrolase YP_001558959.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; cytochrome c biogenesis protein transmembrane region; Redoxin domain protein; Thioredoxin domain; KEGG: cpr:CPR_0721 cytochrome c biogenesis protein transmembrane region family YP_001558960.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cdf:CD3610 glyoxalase YP_001558961.1 KEGG: cth:Cthe_1547 hypothetical protein YP_001558962.1 KEGG: ctc:CTC02470 hypothetical protein YP_001558963.1 KEGG: cpf:CPF_1105 hypothetical protein YP_001558964.1 PFAM: regulatory protein TetR; KEGG: ctc:CTC02471 transcription regulator YP_001558965.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: blo:BL1369 large protein with N-terminal similarity to ATP binding protein of ABC transporter YP_001558966.1 KEGG: dsy:DSY0552 hypothetical protein YP_001558967.1 KEGG: dsy:DSY0553 hypothetical protein YP_001558968.1 KEGG: dsy:DSY0554 hypothetical protein YP_001558969.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amt:Amet_1917 two component transcriptional regulator, winged helix family YP_001558970.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: amt:Amet_1918 integral membrane sensor signal transduction histidine kinase YP_001558971.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ckl:CKL_2305 hypothetical protein YP_001558972.1 PFAM: regulatory protein TetR; KEGG: cbe:Cbei_4692 transcriptional regulator, TetR family YP_001558973.1 PFAM: NADPH-dependent FMN reductase; KEGG: mla:Mlab_1736 hypothetical protein YP_001558974.1 KEGG: rci:RCIX1074 hypothetical protein YP_001558976.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: cbf:CLI_0245 pyridine nucleotide-disulphide oxidoreductase family protein YP_001558977.1 PFAM: Rhodanese domain protein; KEGG: cbf:CLI_1221 phage shock protein YP_001558978.1 KEGG: dsy:DSY4364 hypothetical protein YP_001558979.1 PFAM: metallophosphoesterase; KEGG: sme:SMb20398 hypothetical protein YP_001558980.1 KEGG: btk:BT9727_0548 hypothetical protein YP_001558981.1 PFAM: Carbohydrate binding family 6; APHP domain protein; SMART: cellulose binding type IV; Parallel beta-helix repeat; KEGG: sco:SCO7037 secreted protein YP_001558982.1 PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: tte:TTE0798 Trehalose and maltose hydrolases (possible phosphorylases) YP_001558983.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cac:CAC2614 beta-phosphoglucomutase YP_001558984.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cbe:Cbei_1439 regulatory protein, LacI YP_001558985.1 PFAM: glycoside hydrolase family 31; KEGG: bad:BAD_1599 alpha-xylosidase YP_001558986.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: csc:Csac_2452 methyl-accepting chemotaxis sensory transducer YP_001558987.1 PFAM: extracellular solute-binding protein family 1; KEGG: cdi:DIP0534 sugar-binding secreted protein YP_001558988.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF1344 sugar ABC transporter, permease YP_001558989.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF1343 sugar ABC transporter, permease YP_001558990.1 SMART: Parallel beta-helix repeat; KEGG: sco:SCO7037 secreted protein YP_001558991.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: asu:Asuc_1193 periplasmic binding protein/LacI transcriptional regulator YP_001558992.1 PFAM: dihydrouridine synthase DuS; KEGG: cno:NT01CX_1427 probable transcriptional regulator YP_001558993.1 KEGG: cac:CAC1508 hypothetical protein YP_001558994.1 PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: gtn:GTNG_3106 cell wall lytic activity YP_001558995.1 KEGG: shn:Shewana3_1825 ATPase-like protein YP_001558996.1 KEGG: cth:Cthe_2179 pectate lyase/Amb allergen YP_001558997.1 PFAM: Ig domain protein group 2 domain protein; KEGG: chu:CHU_1335 CHU large protein; endoglucanase-related protein, glucosyl hydrolase family 9 protein YP_001558999.1 PFAM: PT repeat-containing protein; KEGG: pfa:PFF0385c hypothetical protein YP_001559000.1 PFAM: Monogalactosyldiacylglycerol synthase; KEGG: cpf:CPF_0710 monogalactosyldiacylglycerol synthase YP_001559001.1 PFAM: protein of unknown function DUF205; KEGG: fnu:FN0537 hypothetical membrane-spanning protein YP_001559002.1 PFAM: cyclase family protein; KEGG: gur:Gura_0174 cyclase family protein YP_001559003.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cbe:Cbei_0463 hemerythrin-like metal-binding protein YP_001559004.1 KEGG: mhu:Mhun_2065 FAD dependent oxidoreductase YP_001559007.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cdf:CD3121 flavodoxin YP_001559008.1 PFAM: Phosphoglycerate mutase; KEGG: amt:Amet_2630 phosphoglycerate mutase YP_001559009.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbe:Cbei_3065 GCN5-related N-acetyltransferase YP_001559010.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ckl:CKL_2381 predicted transcriptional regulator YP_001559011.1 PFAM: Chromate transporter; KEGG: bth:BT_1736 chromate transport protein YP_001559012.1 PFAM: Chromate transporter; KEGG: ctc:CTC00660 chromate transport protein YP_001559013.1 PFAM: protein of unknown function DUF1121; KEGG: ckl:CKL_1828 hypothetical protein YP_001559014.1 PFAM: Domain of unknown function DUF1848; KEGG: bth:BT_1910 hypothetical protein YP_001559015.1 PFAM: major facilitator superfamily MFS_1; KEGG: csc:Csac_2119 major facilitator superfamily MFS_1 YP_001559016.1 KEGG: cth:Cthe_1481 membrane protein-like protein YP_001559017.1 KEGG: cth:Cthe_1480 hypothetical protein YP_001559018.1 PFAM: regulatory protein TetR; KEGG: cbh:CLC_3223 transcriptional regulator, TetR family YP_001559019.1 KEGG: mvn:Mevan_0087 superfamily I DNA and RNA helicase and helicase subunits-like protein YP_001559020.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gur:Gura_1785 apolipoprotein N-acyltransferase YP_001559023.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: csc:Csac_2727 helix-turn-helix-domain containing protein, AraC type YP_001559024.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi03166 membrane protein; RBL03398 YP_001559025.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BG11788 multiple sugar transport system permease YP_001559026.1 PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH0482 lipoprotein YP_001559027.1 PFAM: glycosyl hydrolase family 88; KEGG: bsu:BG12852 similar to hypothetical proteins YP_001559028.1 PFAM: conserved hypothetical protein; KEGG: cpr:CPR_0537 conserved hypothetical protein TIGR02336 YP_001559030.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1451 ABC transporter related YP_001559031.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pdi:BDI_1057 dehydrogenase YP_001559032.1 PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin) YP_001559033.1 KEGG: lca:LSEI_1862 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit YP_001559034.1 PFAM: cation transporter; KEGG: cpf:CPF_2143 potassium uptake protein, TrkH family YP_001559035.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: chy:CHY_1574 potassium uptake protein KtrA YP_001559036.1 PFAM: carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: csc:Csac_1090 glycosyltransferase 36 YP_001559037.1 TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: amt:Amet_4016 toxin secretion/phage lysis holin YP_001559038.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_001559039.1 KEGG: ckl:CKL_2512 predicted phosphatase YP_001559040.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: bce:BC4462 septum formation protein Maf YP_001559041.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: csc:Csac_2428 alpha amylase, catalytic region YP_001559042.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: tde:TDE1454 sugar transporter YP_001559043.1 PFAM: glycoside hydrolase clan GH-D; KEGG: tde:TDE1453 alpha-galactosidase YP_001559044.1 PFAM: glycoside hydrolase family 1; KEGG: tde:TDE1882 glycosyl hydrolase, family 1 YP_001559045.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sae:NWMN_2605 cold shock protein CspB YP_001559047.1 PFAM: SCP-like extracellular; KEGG: cdf:CD2681 calcium-chelating exported protein YP_001559048.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: cbe:Cbei_0579 phospholipid/glycerol acyltransferase YP_001559049.1 KEGG: dsy:DSY4335 hypothetical protein YP_001559050.1 PFAM: glycoside hydrolase family 19; KEGG: ath:AT1G02360 chitinase YP_001559051.1 KEGG: cbe:Cbei_4715 hypothetical protein YP_001559055.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_001559056.1 KEGG: tpt:Tpet_1070 arginine biosynthesis bifunctional protein ArgJ; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ YP_001559057.1 KEGG: cje:Cj0226 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_001559058.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: cju:C8J_0205 acetylornithine aminotransferase YP_001559059.1 PFAM: protein of unknown function DUF606; KEGG: cbe:Cbei_5065 protein of unknown function DUF606 YP_001559060.1 KEGG: csc:Csac_1821 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1 YP_001559061.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amt:Amet_2325 two component transcriptional regulator, winged helix family YP_001559062.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: amt:Amet_2326 histidine kinase YP_001559063.1 KEGG: cth:Cthe_2543 spore germination protein-like protein YP_001559064.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; KEGG: bce:BC4322 ComE operon protein 3 YP_001559065.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: tde:TDE1034 magnesium and cobalt transporter YP_001559066.1 PFAM: conserved hypothetical protein; KEGG: cdf:CD2723 hypothetical protein YP_001559067.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cac:CAC0798 phosphatidylserine synthase YP_001559068.1 PFAM: phosphatidylserine decarboxylase-related; KEGG: cac:CAC0799 phosphatidylserine decarboxylase YP_001559069.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: cth:Cthe_1040 DNA polymerase III, delta subunit YP_001559070.1 PFAM: transcriptional regulator PadR family protein; KEGG: gtn:GTNG_0307 predicted transcriptional regulator YP_001559072.1 KEGG: tde:TDE1859 hypothetical protein YP_001559073.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mac:MA1248 UbiE/COQ5 methyltransferase YP_001559074.1 PFAM: helix-turn-helix domain protein; KEGG: dsy:DSY1949 hypothetical protein YP_001559075.1 PFAM: von Willebrand factor type A; KEGG: bra:BRADO1313 hypothetical protein; signal peptide YP_001559076.1 KEGG: cdf:CD2337 hypothetical protein YP_001559077.1 KEGG: bra:BRADO1315 hypothetical protein; signal peptide YP_001559078.1 PFAM: toxic anion resistance family protein; KEGG: cbe:Cbei_0754 toxic anion resistance family protein YP_001559079.1 PFAM: protein of unknown function DUF362; KEGG: drm:Dred_1308 protein of unknown function DUF362 YP_001559080.1 PFAM: ThiJ/PfpI domain protein; KEGG: cbe:Cbei_3829 ThiJ/PfpI domain protein YP_001559081.1 PFAM: nitroreductase; KEGG: cbe:Cbei_3418 nitroreductase YP_001559082.1 PFAM: Ig domain protein group 2 domain protein; KEGG: tva:TVAG_154640 surface antigen BspA-like Pfam: FNIP Pentapeptide_2 PROSITE: SER_RICH YP_001559083.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: amt:Amet_0582 methyl-accepting chemotaxis sensory transducer YP_001559084.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbf:CLI_1432 ABC transporter, ATP-binding protein YP_001559085.1 PFAM: protein of unknown function DUF214; KEGG: cbf:CLI_1431 ABC transporter, permease YP_001559086.1 PFAM: regulatory protein MarR; KEGG: cbf:CLI_2873 transcriptional regulator, MarR family YP_001559087.1 PFAM: ABC transporter related; KEGG: cac:CAC1464 UvrA-like protein, probably involved in MDR transport YP_001559088.1 PFAM: 5-nucleotidase; KEGG: har:HEAR0649 5'-nucleotidase YP_001559089.1 KEGG: cbh:CLC_2688 hypothetical protein YP_001559090.1 KEGG: cbf:CLI_1052 hypothetical protein YP_001559091.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_1022 ABC transporter, ATP-binding protein YP_001559092.1 KEGG: cbh:CLC_1023 hypothetical protein YP_001559093.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amt:Amet_1691 two component transcriptional regulator, winged helix family YP_001559094.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: amt:Amet_1692 integral membrane sensor signal transduction histidine kinase YP_001559095.1 KEGG: tde:TDE0371 hypothetical protein YP_001559097.1 KEGG: bat:BAS2632 hypothetical protein YP_001559098.1 KEGG: dsy:DSY1009 hypothetical protein YP_001559101.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cbe:Cbei_3030 radical SAM domain protein YP_001559102.1 KEGG: mac:MA4292 cell surface protein YP_001559103.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1865 hypothetical protein YP_001559104.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1864 hypothetical protein YP_001559105.1 KEGG: dsy:DSY1863 hypothetical protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001559106.1 KEGG: dsy:DSY1862 hypothetical protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001559107.1 PFAM: extracellular solute-binding protein family 5; KEGG: dsy:DSY1861 hypothetical protein YP_001559108.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bfs:BF1668 ATP-dependent RNA helicase YP_001559109.1 PFAM: YCII-related; KEGG: cpf:CPF_0987 hypothetical protein YP_001559110.1 PFAM: NLP/P60 protein; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: cdf:CD2402 cell wall hydrolase YP_001559112.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: lbu:LBUL_0275 large-conductance mechanosensitive channel YP_001559113.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bca:BCE_5592 ATP-dependent RNA helicase, DEAD/DEAH box family YP_001559114.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cbe:Cbei_4431 response regulator receiver protein YP_001559115.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; Cache domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4430 multi-sensor signal transduction histidine kinase YP_001559116.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00907 D-ribose-binding periplasmic protein YP_001559117.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_C1350 ABC sugar transporter, fused ATPase subunits YP_001559118.1 PFAM: inner-membrane translocator; KEGG: vei:Veis_1087 inner-membrane translocator YP_001559119.1 KEGG: bch:Bcen2424_5037 periplasmic binding protein/LacI transcriptional regulator YP_001559120.1 PFAM: proteinase inhibitor I4 serpin; KEGG: tte:TTE1560 serine protease inhibitor YP_001559121.1 PFAM: proteinase inhibitor I4 serpin; KEGG: tte:TTE1560 serine protease inhibitor YP_001559122.1 KEGG: dsy:DSY1945 hypothetical protein YP_001559124.1 KEGG: bcz:BCZK0849 hypothetical protein YP_001559125.1 PFAM: transcriptional regulator PadR family protein; KEGG: dsy:DSY4371 hypothetical protein YP_001559126.1 KEGG: aha:AHA_2293 GAF domain protein YP_001559127.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3089 ABC transporter related YP_001559128.1 KEGG: ctc:CTC00156 hypothetical protein YP_001559129.1 PFAM: HhH-GPD family protein; 8-oxoguanine DNA glycosylase domain protein; KEGG: cdf:CD0191 DNA glycosylase (DNA repair protein) YP_001559130.1 PFAM: band 7 protein; KEGG: mlo:mll0592 hypothetical protein YP_001559132.1 PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: lsa:LSA1711 beta-galactosidase, large subunit (lactase, large subunit) YP_001559133.1 PFAM: glycoside hydrolase family 42 domain 5 loop region; KEGG: lsa:LSA1710 beta-galactosidase, small subunit (lactase, small subunit) YP_001559134.1 PFAM: aldo/keto reductase; KEGG: sen:SACE_0624 oxidoreductase, aldo/keto reductase family YP_001559135.1 PFAM: glycoside hydrolase family 43; Glycosyl hydrolase family 32 domain protein; KEGG: sco:SCO0118 xylosidase/arabinosidase YP_001559136.1 KEGG: amt:Amet_3803 copper amine oxidase domain protein YP_001559137.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: csc:Csac_0990 transcriptional regulator, DeoR family YP_001559138.1 PFAM: class II aldolase/adducin family protein; KEGG: chy:CHY_1555 L-fuculose phosphate aldolase YP_001559139.1 TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine phosphorylase family 2; KEGG: ctc:CTC01531 purine nucleoside phosphorylase I YP_001559140.1 KEGG: sth:STH2068 methylthioribose-1-phosphate isomerase; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_001559141.1 PFAM: basic membrane lipoprotein; KEGG: cpf:CPF_1832 lipoprotein, BMP family YP_001559142.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_1831 ABC transporter, ATP-binding protein YP_001559143.1 PFAM: inner-membrane translocator; KEGG: cpr:CPR_1550 ABC transporter (permeases)-like protein lmo1390 YP_001559144.1 PFAM: inner-membrane translocator; KEGG: bcy:Bcer98_2440 inner-membrane translocator YP_001559145.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: tte:TTE1593 cytosine deaminase and related metal-dependent hydrolase YP_001559146.1 PFAM: regulatory protein MerR; KEGG: dsy:DSY0175 hypothetical protein YP_001559147.1 KEGG: ckl:CKL_1132 hypothetical protein YP_001559148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pap:PSPA7_2796 acetyltransferase, GNAT family YP_001559149.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: cbf:CLI_0810 transcriptional regulator YP_001559150.1 PFAM: Endoribonuclease L-PSP; KEGG: sph:MGAS10270_Spy1823 translation initiation inhibitor YP_001559151.1 PFAM: domain of unknown function DUF1730; KEGG: cpf:CPF_1527 iron-sulfur cluster-binding protein YP_001559153.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cbe:Cbei_4014 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001559154.1 KEGG: dsy:DSY3609 hypothetical protein YP_001559155.1 PFAM: protein of unknown function DUF434; KEGG: cbe:Cbei_1509 protein of unknown function DUF434 YP_001559156.1 KEGG: cac:CAC0955 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001559159.1 PFAM: inner-membrane translocator; KEGG: fnu:FN1896 ABC transporter integral membrane protein YP_001559160.1 PFAM: inner-membrane translocator; KEGG: fnu:FN1897 ABC transporter integral membrane protein YP_001559161.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fno:Fnod_0051 ABC transporter related YP_001559162.1 KEGG: fno:Fnod_0052 conserved hypothetical lipoprotein YP_001559163.1 KEGG: cbe:Cbei_1773 hydrogenase, Fe-only; TIGRFAM: hydrogenase, Fe-only; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein YP_001559164.1 KEGG: cpe:CPE1425 pyrrolidone carboxylylate peptidase; TIGRFAM: pyrrolidone-carboxylate peptidase; PFAM: peptidase C15 pyroglutamyl peptidase I YP_001559165.1 PFAM: glycoside hydrolase family 5; KEGG: cac:CAC0826 endoglucanase family 5 YP_001559166.1 KEGG: ctc:CTC02010 RNA polymerase sigma factor rpoD YP_001559167.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mac:MA1121 integral membrane protein YP_001559169.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2297 daunorubicin resistance ABC transporter ATP-binding subunit YP_001559170.1 KEGG: aau:AAur_2329 ABC transporter, integral membrane protein YP_001559171.1 KEGG: cpr:CPR_0886 MutS domain V protein YP_001559172.1 KEGG: sha:SH0197 DNA mismatch repair protein MutS YP_001559174.1 TIGRFAM: glycyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: cno:NT01CX_1048 glycyl-tRNA synthetase YP_001559175.1 PFAM: peptidase M56 BlaR1; KEGG: dsy:DSY3484 hypothetical protein YP_001559176.1 PFAM: Penicillinase repressor; KEGG: dsy:DSY3483 hypothetical protein YP_001559177.1 KEGG: btk:BT9727_2690 hypothetical protein YP_001559178.1 PFAM: transcriptional regulator PadR family protein; KEGG: dsy:DSY1094 hypothetical protein YP_001559179.1 KEGG: dsy:DSY1095 hypothetical protein YP_001559180.1 KEGG: cbe:Cbei_1958 hypothetical protein YP_001559181.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: amt:Amet_1217 haloacid dehalogenase domain protein hydrolase YP_001559182.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cdf:CD0146 amidohydrolase YP_001559183.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_0537 two component transcriptional regulator, winged helix family YP_001559184.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cth:Cthe_0538 periplasmic sensor signal transduction histidine kinase YP_001559185.1 PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0539 ABC transporter related protein YP_001559186.1 PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_0540 protein of unknown function DUF214 YP_001559187.1 PFAM: cell wall hydrolase/autolysin; KEGG: gtn:GTNG_2805 N-acetylmuramoyl-L-alanine amidase, sporulationmother cell wall hydrolase YP_001559188.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: cth:Cthe_0042 small GTP-binding protein YP_001559189.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain YP_001559190.1 catalyzes the formation of biotin from dethiobiotin and sulfur YP_001559191.1 PFAM: chemotaxis sensory transducer; Heme NO binding domain protein; KEGG: cac:CAC3243 membrane associated methyl-accepting chemotaxis protein YP_001559192.1 PFAM: Pyrrolo-quinoline quinone; KEGG: cth:Cthe_0739 hypothetical protein YP_001559193.1 PFAM: Pyrrolo-quinoline quinone; KEGG: cth:Cthe_0739 hypothetical protein YP_001559194.1 PFAM: metallophosphoesterase; KEGG: btk:BT9727_3733 calcineurin-like phosphoesterase YP_001559195.1 KEGG: cth:Cthe_0739 hypothetical protein YP_001559196.1 PFAM: oxidoreductase domain protein; KEGG: art:Arth_3674 oxidoreductase domain protein YP_001559200.1 KEGG: tte:TTE2610 histidinol phosphatase and related hydrolases of the PHP family YP_001559201.1 PFAM: Coat F domain protein; KEGG: amt:Amet_0905 coat F domain protein YP_001559203.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: lwe:lwe0750 amidohydrolase YP_001559205.1 KEGG: dsy:DSY4108 hypothetical protein YP_001559207.1 PFAM: integrase family protein; KEGG: cbe:Cbei_1373 phage integrase family protein YP_001559208.1 PFAM: MOFRL domain protein; KEGG: amt:Amet_0678 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_001559209.1 PFAM: Gluconate transporter; Citrate transporter; KEGG: tde:TDE0207 permease, GntP family YP_001559210.1 PFAM: glycoside hydrolase family 11; KEGG: bay:RBAM_033790 XynA YP_001559211.1 PFAM: protein of unknown function DUF323; KEGG: cbe:Cbei_3040 protein of unknown function DUF323 YP_001559212.1 PFAM: transcription activator effector binding; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH0594 transcriptional regulator (AraC/XylS family) YP_001559213.1 PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; KEGG: tpt:Tpet_0863 endo-1,4-beta-xylanase YP_001559214.1 PFAM: aminoglycoside phosphotransferase; KEGG: bat:BAS2405 hypothetical protein YP_001559215.1 PFAM: sugar diacid recognition domain protein; KEGG: btk:BT9727_1189 transcriptional regulator; possible carbohydrate diacid regulator YP_001559216.1 PFAM: helix-turn-helix domain protein; KEGG: btl:BALH_2993 transcriptional regulator YP_001559217.1 KEGG: cth:Cthe_1537 hypothetical protein YP_001559218.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1536 ABC transporter related protein YP_001559219.1 KEGG: cth:Cthe_1535 hypothetical protein YP_001559220.1 PFAM: major facilitator superfamily MFS_1; KEGG: cth:Cthe_2967 major facilitator superfamily MFS_1 YP_001559221.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cbf:CLI_2228 glyoxalase family protein YP_001559222.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_0063 rubredoxin-type Fe(Cys)4 protein YP_001559224.1 PFAM: cytochrome c biogenesis protein transmembrane region; Heavy metal transport/detoxification protein; KEGG: cth:Cthe_1849 heavy metal transport/detoxification protein YP_001559225.1 KEGG: cth:Cthe_1850 hypothetical protein YP_001559226.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1847 two component transcriptional regulator, winged helix family YP_001559227.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ckl:CKL_1494 predicted sensory transduction histidine kinase YP_001559228.1 SMART: transglutaminase domain protein; KEGG: ssa:SSA_0384 hypothetical protein YP_001559229.1 PFAM: oxidoreductase domain protein; aspartate dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: pha:PSHAb0019 dinucleotide-utilizing enzyme YP_001559230.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bvu:BVU_0072 lactate dehydrogenase and related dehydrogenase YP_001559231.1 PFAM: pentapeptide repeat protein; KEGG: mba:Mbar_A3729 hypothetical protein YP_001559232.1 contains C-terminal beta-propeller domain distantly related to WD-40 repeats; KEGG: cth:Cthe_2109 copper amine oxidase-like protein YP_001559233.1 PFAM: glycoside hydrolase family 26; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: cth:Cthe_0032 glycoside hydrolase, family 26 YP_001559234.1 PFAM: regulatory protein ArsR; KEGG: fno:Fnod_1613 regulatory protein ArsR YP_001559236.1 PFAM: GCN5-related N-acetyltransferase YP_001559237.1 KEGG: cbf:CLI_1616 hypothetical protein; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein YP_001559238.1 PFAM: protein of unknown function DUF156; KEGG: dsy:DSY0389 hypothetical protein YP_001559239.1 KEGG: ctc:CTC00436 hypothetical protein YP_001559240.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: spd:SPD_1621 ABC transporter, ATP-binding/permease YP_001559241.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgl:SG0677 ABC transporter ATP-binding component YP_001559242.1 KEGG: lsa:LSA1148 multidrug ABC exporter, ATP-binding and membrane-spanning/permease subunits YP_001559243.1 PFAM: regulatory protein MarR; KEGG: cbe:Cbei_0048 transcriptional regulator, TrmB YP_001559244.1 PFAM: extracellular solute-binding protein family 1; KEGG: cth:Cthe_1588 extracellular solute-binding protein, family 1 YP_001559245.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cth:Cthe_1585 signal transduction histidine kinase, LytS YP_001559246.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cth:Cthe_1584 two component transcriptional regulator, AraC family YP_001559247.1 KEGG: tde:TDE0186 hypothetical protein YP_001559248.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tde:TDE0183 ABC transporter, permease YP_001559249.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tde:TDE0182 ABC transporter, ATP-binding protein YP_001559253.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: blo:BL1114 DNA polymerase V YP_001559254.1 KEGG: lre:Lreu_1305 hypothetical protein YP_001559255.1 KEGG: fno:Fnod_0484 phosphodiesterase, MJ0936 family YP_001559256.1 PFAM: regulatory protein ArsR; KEGG: cbe:Cbei_2108 regulatory protein, ArsR YP_001559257.1 KEGG: dsy:DSY4598 hypothetical protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001559258.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dsy:DSY4672 hypothetical protein YP_001559259.1 PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: dsy:DSY4151 hypothetical protein YP_001559260.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cbe:Cbei_2111 protein tyrosine phosphatase YP_001559261.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ckl:CKL_3374 predicted transcriptional regulator YP_001559262.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: sep:SE0112 pyridoxal-deC YP_001559263.1 KEGG: cdf:CD0664B hypothetical protein YP_001559264.1 KEGG: bha:BH1891 hypothetical protein YP_001559266.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3240 cupin 2, conserved barrel domain protein YP_001559267.1 PFAM: GCN5-related N-acetyltransferase; KEGG: lic:LIC12825 hypothetical protein YP_001559268.1 KEGG: bcl:ABC1976 hypothetical protein YP_001559270.1 KEGG: cbe:Cbei_3228 hypothetical protein YP_001559271.1 PFAM: nitroreductase; KEGG: ckl:CKL_0342 predicted oxidoreductase YP_001559272.1 KEGG: pth:PTH_1521 hypothetical protein YP_001559275.1 KEGG: fnu:FN0847 TPR-repeat-containing proteins YP_001559276.1 PFAM: heat shock protein DnaJ domain protein YP_001559277.1 PFAM: Integrase catalytic region; KEGG: cbe:Cbei_0719 integrase, catalytic region YP_001559278.1 PFAM: transposase IS3/IS911 family protein; KEGG: lga:LGAS_1507 transposase YP_001559280.1 KEGG: amt:Amet_4677 hypothetical protein YP_001559281.1 KEGG: bca:BCE_A0177 hypothetical protein YP_001559282.1 KEGG: bca:BCE_A0176 hypothetical protein YP_001559283.1 PFAM: Protein of unknown function CGGC region; KEGG: cbf:CLI_0908 CGGC domain protein YP_001559284.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bpl:BURPS1106A_A2865 cysteine desulfurase YP_001559285.1 PFAM: Rhodanese domain protein; regulatory protein ArsR; KEGG: mba:Mbar_A3427 ArsR family transcriptional regulator YP_001559286.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cac:CAC3420 low specificity L-threonine aldolase YP_001559287.1 PFAM: Patatin; KEGG: cpr:CPR_1546 patatin-like phospholipase family YP_001559288.1 PFAM: CutC family protein; KEGG: bvu:BVU_3897 copper homeostasis protein YP_001559289.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: cbe:Cbei_2737 leucyl aminopeptidase YP_001559290.1 PFAM: protein of unknown function DUF161; KEGG: cdf:CD1950 hypothetical protein YP_001559291.1 PFAM: transglutaminase domain protein; KEGG: pdi:BDI_3332 hypothetical protein YP_001559292.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: csc:Csac_2727 helix-turn-helix-domain containing protein, AraC type YP_001559294.1 PFAM: glutaredoxin 2; KEGG: mhu:Mhun_3231 cytochrome c biogenesis protein, transmembrane region YP_001559295.1 PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: cpe:CPE0324 probable glycosyl hydrolase YP_001559296.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0362 polysaccharide ABC transporter permease YP_001559297.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3119 sugar ABC transporter permease YP_001559298.1 PFAM: extracellular solute-binding protein family 1; KEGG: oih:OB3210 multiple sugar transport system substrate-binding protein YP_001559299.1 KEGG: amt:Amet_1816 hypothetical protein YP_001559300.1 PFAM: integrase family protein; KEGG: cdf:CD1932 tyrosine recombinase YP_001559305.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE1062 ABC transporter, ATP-binding protein, HlyB family YP_001559306.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE1061 ABC transporter, ATP-binding/permease, HlyB family YP_001559307.1 PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein YP_001559308.1 KEGG: lsl:LSL_1787 transposase ISLasa14, IS3 family YP_001559310.1 KEGG: amt:Amet_1757 IstB domain protein ATP-binding protein YP_001559312.1 KEGG: ssp:SSP1089 FKBP-type peptidyl-prolyl cis-trans isomerase YP_001559313.1 KEGG: dsy:DSY2015 hypothetical protein YP_001559314.1 KEGG: bha:BH1891 hypothetical protein YP_001559315.1 KEGG: ldb:Ldb0968 hypothetical protein YP_001559316.1 KEGG: lbu:LBUL_0835 hypothetical protein YP_001559317.1 PFAM: glycosyl transferase family 2; chitin synthase; KEGG: msm:MSMEG_0476 chitin synthase YP_001559318.1 PFAM: polysaccharide deacetylase; KEGG: cdf:CD2598 oligosaccharide deacetylase YP_001559319.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: cth:Cthe_2340 UDP-glucose/GDP-mannose dehydrogenase YP_001559320.1 PFAM: Chloramphenicol phosphotransferase family protein; KEGG: ppr:PBPRA2780 hypothetical protein YP_001559321.1 KEGG: bat:BAS2739 hypothetical protein YP_001559322.1 KEGG: bpu:BPUM_0359 hypothetical protein YP_001559323.1 KEGG: btk:pBT9727_0044 acetyltransferase YP_001559325.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_2735 drug resistance ABC transporter, RA2 family, ATP-binding protein YP_001559326.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: cbf:CLI_2911 florfenicol/chloramphenicol resistance protein YP_001559328.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mac:MA1701 acetyltransferase YP_001559329.1 KEGG: cbe:Cbei_2683 alpha/beta superfamily hydrolase YP_001559330.1 KEGG: tte:TTE1718 thiol-disulfide isomerase and thioredoxins YP_001559331.1 PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: cbf:CLI_2080 hypothetical protein YP_001559332.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; Helix-turn-helix type 11 domain protein; KEGG: bat:BAS2409 hypothetical protein YP_001559333.1 KEGG: ftw:FTW_0523 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_001559334.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_2860 helix-turn-helix-domain containing protein, AraC type YP_001559336.1 KEGG: ckl:CKL_0345 predicted peptidoglycan biosynthesis protein YP_001559338.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_2362 predicted ABC transporter, ATPase component YP_001559339.1 PFAM: regulatory protein GntR HTH; KEGG: cac:CAC0265 transcriptional regulator, GntR family YP_001559340.1 PFAM: Abortive infection protein; KEGG: dsy:DSY1578 hypothetical protein YP_001559341.1 PFAM: GHMP kinase; KEGG: dde:Dde_3653 galactokinase YP_001559343.1 PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3411 helix-turn-helix-domain containing protein, AraC type YP_001559344.1 KEGG: lmf:LMOf2365_0429 internalin YP_001559345.1 PFAM: inner-membrane translocator; KEGG: cpr:CPR_1343 MglC YP_001559346.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fnu:FN1166 galactoside transport ATP-binding protein mglA YP_001559347.1 KEGG: cbe:Cbei_4434 periplasmic binding protein/LacI transcriptional regulator YP_001559348.1 KEGG: cac:CAC3385 hypothetical protein YP_001559349.1 KEGG: cac:CAC3385 hypothetical protein YP_001559350.1 KEGG: cac:CAC3386 hypothetical protein YP_001559353.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00907 D-ribose-binding periplasmic protein YP_001559354.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; Cache domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4430 multi-sensor signal transduction histidine kinase YP_001559355.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cbe:Cbei_4431 response regulator receiver protein YP_001559356.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tde:TDE2474 acetyltransferase, GNAT family YP_001559357.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: amt:Amet_3206 FMN-dependent alpha-hydroxy acid dehydrogenase YP_001559358.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: pmy:Pmen_4206 phosphodiesterase, MJ0936 family YP_001559359.1 PFAM: protein of unknown function DUF187; KEGG: btk:BT9727_0818 conserved hypothetical protein and possible S-layer protein fusion YP_001559360.1 PFAM: cell wall hydrolase/autolysin; copper amine oxidase domain protein; KEGG: amt:Amet_0953 N-acetylmuramoyl-L-alanine amidase YP_001559361.1 PFAM: PP-loop domain protein; KEGG: cth:Cthe_2181 predicted ATPase of the PP-loop superfamily implicated in cell cycle control YP_001559363.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: amt:Amet_0707 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_001559364.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: csc:Csac_0294 N-acylglucosamine 2-epimerase YP_001559365.1 KEGG: cbh:CLC_2573 lipase/acylhydrolase, GDSL family YP_001559366.1 PFAM: glycosidase PH1107-related; KEGG: tma:TM1225 hypothetical protein YP_001559367.1 PFAM: extracellular solute-binding protein family 1; KEGG: cth:Cthe_1046 extracellular solute-binding protein, family 1 YP_001559369.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2413 binding-protein-dependent transport systems inner membrane component YP_001559370.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2414 binding-protein-dependent transport systems inner membrane component YP_001559371.1 KEGG: csc:Csac_2415 hypothetical protein YP_001559372.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2417 binding-protein-dependent transport systems inner membrane component YP_001559373.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2418 binding-protein-dependent transport systems inner membrane component YP_001559374.1 PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_2419 extracellular solute-binding protein, family 1 YP_001559375.1 KEGG: tte:TTE1959 hypothetical protein YP_001559376.1 PFAM: glycoside hydrolase family 26; Carbohydrate binding family 6; KEGG: cth:Cthe_2811 glycoside hydrolase, family 26 YP_001559378.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cbe:Cbei_3881 regulatory protein, LacI YP_001559379.1 KEGG: efa:EF0937 hypothetical protein YP_001559380.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_001559381.1 TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: amt:Amet_2340 SpoIID/LytB domain protein YP_001559383.1 KEGG: plu:plu1458 unnamed protein product; similar to streptomycin adenyltransferase YP_001559384.1 KEGG: cth:Cthe_0350 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_001559385.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001559386.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits YP_001559387.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: amt:Amet_4209 oxidoreductase FAD/NAD(P)-binding domain protein YP_001559388.1 KEGG: tde:TDE0164 hypothetical protein YP_001559389.1 PFAM: peptidase M23B; KEGG: bcl:ABC2951 metalloendopeptidase YP_001559390.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: ckl:CKL_1335 SigE1 YP_001559391.1 PFAM: peptidase U32; KEGG: amt:Amet_2471 peptidase U32 YP_001559392.1 PFAM: O-methyltransferase family 3; KEGG: cbh:CLC_2427 O-methyltransferase family protein YP_001559394.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: cth:Cthe_1302 hypothetical protein YP_001559395.1 PFAM: ferric-uptake regulator; KEGG: cdf:CD1287 ferric uptake regulation protein YP_001559397.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: dsy:DSY2418 hypothetical protein YP_001559398.1 PFAM: protein of unknown function DUF965; KEGG: csc:Csac_1773 protein of unknown function DUF965 YP_001559399.1 KEGG: tte:TTE0962 2-methylthioadenine synthetase; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001559400.1 PFAM: phosphocarrier HPr protein; KEGG: csc:Csac_1846 hypothetical protein YP_001559401.1 TIGRFAM: thiamine biosynthesis/tRNA modification protein ThiI; PFAM: thiamine biosynthesis protein; THUMP domain protein; ExsB family protein; KEGG: cth:Cthe_1063 thiamine biosynthesis/tRNA modification protein ThiI YP_001559402.1 PFAM: aminotransferase class V; KEGG: tte:TTE1663 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes YP_001559403.1 PFAM: protein of unknown function DUF558; KEGG: cth:Cthe_1319 protein of unknown function DUF558 YP_001559404.1 KEGG: cbe:Cbei_4135 pullulanase, type I; TIGRFAM: pullulanase, type I; PFAM: glycoside hydrolase family 13 domain protein; pullanase-associated protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001559406.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: btl:BALH_3631 maltosaccharide ABC transporter, permease YP_001559407.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bca:BCE_4063 maltosaccharide ABC transporter, permease YP_001559408.1 PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA3175 maltose-binding periplasmic protein YP_001559409.1 TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; KEGG: cth:Cthe_1320 ribosomal protein L11 methyltransferase YP_001559410.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: tte:TTE0956 Molecular chaperones (contain C-terminal Zn finger domain) YP_001559411.1 KEGG: cth:Cthe_1322 chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70 YP_001559412.1 PFAM: GrpE protein; KEGG: cth:Cthe_1323 GrpE protein YP_001559413.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: amt:Amet_3050 heat-inducible transcription repressor HrcA YP_001559414.1 KEGG: cdf:CD2464 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001559415.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001559416.1 PFAM: Stage II sporulation P family protein; KEGG: cth:Cthe_1328 stage II sporulation P YP_001559417.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination YP_001559418.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_001559419.1 PFAM: regulatory protein GntR HTH; KEGG: drm:Dred_3243 regulatory protein GntR, HTH YP_001559420.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lbu:LBUL_1588 ABC-type multidrug transport system, ATPase component YP_001559421.1 KEGG: amt:Amet_1325 hypothetical protein YP_001559422.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bvu:BVU_2307 GFO/IDH/MocA-family oxidoreductase YP_001559423.1 KEGG: ckl:CKL_3502 predicted penicillin binding protein YP_001559424.1 PFAM: Penicillinase repressor; KEGG: dsy:DSY0731 hypothetical protein YP_001559425.1 KEGG: cbe:Cbei_2116 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001559427.1 PFAM: thioesterase superfamily protein; KEGG: bha:BH0798 acyl-CoA hydrolase YP_001559428.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein YP_001559429.1 PFAM: deoxynucleoside kinase; KEGG: lin:lin1817 similar to deoxyguanosine kinase/deoxyadenosine kinase(I) subunit YP_001559431.1 KEGG: cpe:CPE1552 pullulanase; TIGRFAM: pullulanase, type I; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001559432.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: lsl:LSL_1568 beta-N-acetylhexosaminidase YP_001559433.1 KEGG: tme:Tmel_1180 GatB/YqeY domain protein YP_001559434.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_001559436.1 PFAM: glycosyl transferase group 1; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: ecc:c3694 hypothetical protein YP_001559437.1 PFAM: diaminopimelate epimerase; KEGG: mmw:Mmwyl1_0680 diaminopimelate epimerase YP_001559438.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cac:CAC2818 AraC-type DNA-binding domain-containing protein, transcriptional regulator YP_001559439.1 PFAM: protein of unknown function DUF214; KEGG: btk:BT9727_3141 ABC transporter, permease YP_001559440.1 KEGG: btk:BT9727_3141 ABC transporter, permease YP_001559441.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gka:GK0615 exo-alpha-1,4-glucosidase YP_001559442.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cbe:Cbei_0735 alpha amylase, catalytic region YP_001559443.1 TIGRFAM: glycogen debranching enzyme; PFAM: Amylo-alpha-16-glucosidase; KEGG: vfi:VF2048 amylo-1,6-glucosidase YP_001559444.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: llm:llmg_0743 alpha-amylase YP_001559445.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF1343 sugar ABC transporter, permease YP_001559446.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF1344 sugar ABC transporter, permease YP_001559447.1 PFAM: extracellular solute-binding protein family 1; KEGG: cdi:DIP0534 sugar-binding secreted protein YP_001559448.1 KEGG: cbe:Cbei_0285 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_001559449.1 amylomaltase; acts to release glucose from maltodextrins YP_001559450.1 PFAM: glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gtn:GTNG_0610 neopullulanase YP_001559451.1 PFAM: regulatory protein LacI; KEGG: bha:BH3692 transcriptional regulator YP_001559452.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive YP_001559453.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: csc:Csac_0443 alanine racemase YP_001559454.1 PFAM: Penicillinase repressor; KEGG: cdf:CD0547 penicillin-binding protein repressor YP_001559455.1 KEGG: dsy:DSY0184 hypothetical protein YP_001559456.1 KEGG: pth:PTH_1818 pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_001559457.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_001559458.1 PFAM: 3-dehydroquinate synthase; KEGG: cth:Cthe_0786 3-dehydroquinate synthase YP_001559459.1 PFAM: DivIVA family protein; KEGG: csc:Csac_1911 DivIVA family protein YP_001559460.1 PFAM: RNA-binding S4 domain protein; KEGG: cdf:CD2620 RNA-binding cell division protein YP_001559461.1 PFAM: protein of unknown function DUF552; KEGG: ssp:SSP1582 hypothetical protein YP_001559462.1 PFAM: alanine racemase domain protein; KEGG: cth:Cthe_0792 protein of unknown function UPF0001 YP_001559463.1 KEGG: tte:TTE1601 membrane-fusion protein YP_001559464.1 PFAM: protein of unknown function DUF378; KEGG: cbf:CLI_0507 hypothetical protein YP_001559465.1 KEGG: amt:Amet_3681 hypothetical protein YP_001559466.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: tte:TTE0925 D-alanyl-D-alanine carboxypeptidase YP_001559467.1 KEGG: csc:Csac_1874 methylglyoxal synthase; TIGRFAM: methylglyoxal synthase; PFAM: MGS domain protein YP_001559468.1 PFAM: cell cycle protein; KEGG: cbf:CLI_0695 rod shape-determining protein RodA YP_001559469.1 TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: csc:Csac_1872 cell division topological specificity factor MinE YP_001559470.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cth:Cthe_0093 septum site-determining protein MinD YP_001559471.1 TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: csc:Csac_1870 septum site-determining protein MinC YP_001559472.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: csc:Csac_1869 peptidoglycan glycosyltransferase YP_001559473.1 KEGG: cth:Cthe_0090 hypothetical protein YP_001559474.1 TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: cth:Cthe_0089 rod shape-determining protein MreC YP_001559475.1 functions in MreBCD complex in some organisms YP_001559476.1 PFAM: DNA repair protein RadC; KEGG: cbh:CLC_2900 DNA repair protein, RadC family YP_001559477.1 KEGG: tte:TTE0895 hypothetical protein YP_001559478.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; Aluminium resistance family protein; KEGG: cth:Cthe_0794 aluminium resistance protein YP_001559479.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_001559480.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: cth:Cthe_0776 DNA mismatch repair protein MutL YP_001559481.1 This protein performs the mismatch recognition step during the DNA repair process YP_001559482.1 PFAM: ribonuclease H; KEGG: esa:ESA_03125 hypothetical protein YP_001559483.1 PFAM: DNA mismatch repair protein MutS domain protein; KEGG: cpr:CPR_0886 MutS domain V protein YP_001559484.1 PFAM: NLP/P60 protein; SH3 type 3 domain protein; KEGG: csc:Csac_1052 NLP/P60 protein YP_001559485.1 TIGRFAM: stage IV sporulation protein A; PFAM: Sporulation stage IV protein A; KEGG: cth:Cthe_1021 stage IV sporulation protein A YP_001559486.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_001559487.1 PFAM: Ribose/galactose isomerase; KEGG: cac:CAC2606 hypothetical protein YP_001559488.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_001559489.1 PFAM: protein of unknown function DUF205; KEGG: cdf:CD2631 hypothetical protein YP_001559490.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001559491.1 PFAM: protein of unknown function DUF512; KEGG: cth:Cthe_1025 protein of unknown function DUF512 YP_001559492.1 PFAM: periplasmic binding protein; KEGG: dsy:DSY3874 hypothetical protein YP_001559493.1 PFAM: transport system permease; ABC-3 protein; KEGG: bpu:BPUM_3521 iron (Fe) ABC superfamily ATP binding cassette transporter, membrane protein YP_001559494.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VPA1652 ATP-binding component of citrate-dependent iron(III) transport protein YP_001559495.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate YP_001559496.1 PFAM: protein of unknown function DUF204; KEGG: cno:NT01CX_0960 hypothetical protein YP_001559497.1 PFAM: protein of unknown function DUF152; KEGG: cth:Cthe_0911 protein of unknown function DUF152 YP_001559498.1 PFAM: protein of unknown function UPF0102; KEGG: cdf:CD1271 hypothetical protein YP_001559499.1 KEGG: csc:Csac_2149 cytoplasmic domain of flagellar protein FhlB-like protein YP_001559500.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_001559501.1 PFAM: GTP-binding protein HSR1-related; KEGG: cth:Cthe_0763 GTP-binding protein YP_001559502.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: ckl:CKL_1407 hypothetical protein YP_001559503.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001559504.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: cpe:CPE1484 hypothetical protein YP_001559505.1 KEGG: cdf:CD1256 tRNA (guanine-n(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_001559506.1 Essential for efficient processing of 16S rRNA YP_001559507.1 KEGG: pth:PTH_1722 predicted RNA binding protein YP_001559508.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_001559509.1 KEGG: cdf:CD1252 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001559510.1 PFAM: helix-turn-helix protein YlxM/p13 family protein; KEGG: ctc:CTC01247 hypothetical protein YP_001559511.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_3364 hypothetical protein YP_001559514.1 KEGG: pto:PTO0127 transporter YP_001559515.1 KEGG: sma:SAV6238 hypothetical protein YP_001559516.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: cac:CAC0851 ortholog YgiD E.coli YP_001559517.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbf:CLI_1070 acetyltransferase, GNAT family YP_001559518.1 PFAM: Aldehyde Dehydrogenase_; KEGG: cbe:Cbei_2282 aldehyde dehydrogenase YP_001559519.1 KEGG: amt:Amet_3947 hypothetical protein YP_001559520.1 KEGG: cpf:CPF_0333 hypothetical protein YP_001559521.1 KEGG: amt:Amet_3944 membrane protein YP_001559522.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: lbl:LBL_2334 rRNA methylase YP_001559523.1 KEGG: cbe:Cbei_2773 hypothetical protein YP_001559524.1 PFAM: helix-turn-helix domain protein; KEGG: cbe:Cbei_3549 transcriptional regulator, XRE family YP_001559525.1 KEGG: dsy:DSY0156 hypothetical protein YP_001559528.1 PFAM: Ig domain protein group 2 domain protein; SMART: transglutaminase domain protein; KEGG: bcz:BCZK0884 S-layer protein YP_001559529.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0397 ABC transporter related protein YP_001559530.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0396 ABC transporter related protein YP_001559531.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cac:CAC2394 transcriptional regulator, LysR family YP_001559532.1 KEGG: pna:Pnap_4854 hypothetical protein YP_001559533.1 PFAM: pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: cth:Cthe_0701 conserved carboxylase region containing protein YP_001559534.1 KEGG: csc:Csac_2482 sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit YP_001559535.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cth:Cthe_0700 biotin/lipoyl attachment protein YP_001559536.1 PFAM: sodium pump decarboxylase gamma subunit YP_001559537.1 PFAM: carboxyl transferase; KEGG: cth:Cthe_0699 carboxyl transferase YP_001559538.1 PFAM: regulatory protein RecX; KEGG: cbe:Cbei_2402 regulatory protein RecX YP_001559539.1 KEGG: cth:Cthe_1050 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase YP_001559540.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cbe:Cbei_3056 BFD domain protein (2Fe-2S)-binding domain protein YP_001559541.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_001559542.1 KEGG: cth:Cthe_0926 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001559543.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: cth:Cthe_0927 chromosome segregation protein SMC YP_001559544.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: amt:Amet_2752 ribonuclease III YP_001559545.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein YP_001559546.1 carries the fatty acid chain in fatty acid biosynthesis YP_001559547.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: cno:NT01CX_2221 fatty acid/phospholipid synthesis protein PlsX YP_001559548.1 PFAM: MCP methyltransferase CheR-type; KEGG: csc:Csac_0981 protein-glutamate O-methyltransferase YP_001559549.1 TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: RNA binding S1 domain protein; LytB protein; KEGG: cth:Cthe_0714 hydroxymethylbutenyl pyrophosphate reductase YP_001559550.1 KEGG: csc:Csac_1889 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_001559551.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; KEGG: cno:NT01CX_2094 NAD(FAD)-utilizing dehydrogenase YP_001559553.1 PFAM: CinA domain protein; KEGG: tte:TTE1375 predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA YP_001559554.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cpr:CPR_1646 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001559555.1 KEGG: tte:TTE1377 2-methylthioadenine synthetase; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001559556.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: cth:Cthe_1093 methenyltetrahydrofolate cyclohydrolase YP_001559557.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: cpr:CPR_0345 cardiolipin synthetase YP_001559558.1 PFAM: aconitate hydratase domain protein; KEGG: dsy:DSY4204 aconitase A YP_001559560.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_0545 MATE efflux family protein YP_001559561.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: amt:Amet_0544 helix-turn-helix-domain containing protein, AraC type YP_001559562.1 KEGG: amt:Amet_4322 hypothetical protein YP_001559563.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cbf:CLI_1505 NADH-dependent butanol dehydrogenase YP_001559564.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_1165 hypothetical protein YP_001559565.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_1164 hypothetical protein YP_001559566.1 PFAM: extracellular solute-binding protein family 1; KEGG: llc:LACR_1435 ABC-type sugar transport system, periplasmic component YP_001559567.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bha:BH1928 transcriptional regulator (LacI family) YP_001559568.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin YP_001559569.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation YP_001559570.1 PFAM: peptidase U4 sporulation factor SpoIIGA; KEGG: bpu:BPUM_1425 stage II sporulation U4 family membrane protease YP_001559571.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: cth:Cthe_0445 cell division protein FtsZ YP_001559572.1 KEGG: cbh:CLC_1498 cell division protein FtsQ YP_001559573.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: tte:TTE1644 UDP-N-acetylglucosamine enolpyruvyl transferase YP_001559574.1 PFAM: cell cycle protein; KEGG: csc:Csac_0924 cell division protein FtsW YP_001559575.1 TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: amt:Amet_2881 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_001559576.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: csc:Csac_0919 stage V sporulation protein D YP_001559577.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: tte:TTE1651 Cell division protein FtsI/penicillin-binding protein 2 YP_001559578.1 PFAM: Septum formation initiator YP_001559579.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: cac:CAC2132 S-adenosyl-methyltransferase YP_001559580.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: tte:TTE1654 MraZ protein YP_001559581.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: csc:Csac_0915 prolipoprotein diacylglyceryl transferase YP_001559582.1 TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein HSR1-related; Protein of unknown function DUF933; KEGG: csc:Csac_1719 GTP-binding protein YchF YP_001559583.1 TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; Thiamin pyrophosphokinase vitamin B1-binding region; KEGG: ctc:CTC01228 thiamin pyrophosphokinase YP_001559584.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: cbe:Cbei_1153 ribulose-phosphate 3-epimerase YP_001559585.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: amt:Amet_2778 ribosome small subunit-dependent GTPase A YP_001559586.1 PFAM: protein of unknown function RIO1; protein kinase; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; KEGG: csc:Csac_2076 protein kinase YP_001559587.1 PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: cth:Cthe_0573 protein serine/threonine phosphatases YP_001559588.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: cpr:CPR_1711 radical SAM enzyme, Cfr family YP_001559589.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: cth:Cthe_0571 sun protein YP_001559590.1 PFAM: peptidase membrane zinc metallopeptidase KEGG: efa:EF2210 hypothetical protein YP_001559591.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: cdf:CD2584 methionyl-tRNA formyltransferase YP_001559592.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001559593.1 KEGG: tte:TTE1508 Primosomal protein N (replication factor Y) - superfamily II helicase; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001559594.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dsy:DSY3693 hypothetical protein YP_001559595.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cth:Cthe_0978 UDP-N-acetylmuramyl-tripeptide synthetases YP_001559596.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: drm:Dred_1457 glycogen/starch synthases, ADP-glucose type YP_001559597.1 TIGRFAM: sporulation transcription factor Spo0A; PFAM: response regulator receiver; Sporulation initiation factor Spo0A; KEGG: cth:Cthe_0812 response regulator receiver protein YP_001559598.1 KEGG: amt:Amet_2512 peptidase S55, sporulation stage IV, protein B; TIGRFAM: stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB; SMART: PDZ/DHR/GLGF domain protein YP_001559599.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: cth:Cthe_0814 DNA repair protein RecN YP_001559600.1 PFAM: Ig domain protein group 2 domain protein; KEGG: cth:Cthe_0056 Ig-like, group 2 YP_001559602.1 KEGG: cdf:CD0476 hypothetical protein YP_001559603.1 PFAM: Chloramphenicol phosphotransferase family protein; KEGG: sma:SAV787 hypothetical protein YP_001559605.1 KEGG: ckl:CKL_0484 hypothetical protein YP_001559606.1 KEGG: btl:BALH_1130 hypothetical protein YP_001559607.1 PFAM: protein of unknown function DUF28; KEGG: cth:Cthe_2075 protein of unknown function DUF28 YP_001559608.1 PFAM: arginine repressor; KEGG: csc:Csac_1897 arginine repressor, ArgR YP_001559609.1 PFAM: ATP-NAD/AcoX kinase; KEGG: cth:Cthe_0816 NAD(+) kinase YP_001559610.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: cdf:CD1208 RNA methyltransferase YP_001559611.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: amt:Amet_2508 deoxyxylulose-5-phosphate synthase YP_001559612.1 PFAM: Polyprenyl synthetase; KEGG: cdf:CD1205 geranyltranstransferase YP_001559613.1 PFAM: Exonuclease VII small subunit; KEGG: efa:EF0980 exodeoxyribonuclease VII, small subunit YP_001559614.1 KEGG: gka:GK2395 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type YP_001559615.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: amt:Amet_2501 NusB antitermination factor YP_001559616.1 PFAM: protein of unknown function DUF322; KEGG: amt:Amet_2500 protein of unknown function DUF322 YP_001559617.1 KEGG: cth:Cthe_0838 hypothetical protein YP_001559618.1 KEGG: cth:Cthe_0839 stage III sporulation protein AG YP_001559619.1 KEGG: cth:Cthe_0840 hypothetical protein YP_001559620.1 KEGG: amt:Amet_2496 sporulation stage III, protein AE YP_001559621.1 TIGRFAM: stage III sporulation protein AD; PFAM: Sporulation stage III protein AD; KEGG: amt:Amet_2495 sporulation stage III, protein AD YP_001559622.1 KEGG: cdf:CD1194 stage III sporulation protein AC YP_001559623.1 KEGG: cth:Cthe_0844 stage III sporulation protein spoIIIAB YP_001559624.1 TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase; KEGG: pth:PTH_1166 hypothetical protein YP_001559625.1 PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: cno:NT01CX_0621 shikimate 5-dehydrogenase YP_001559626.1 PFAM: transcriptional regulator PadR family protein; KEGG: cdf:CD3209 PadR-family transcriptional regulator YP_001559629.1 TIGRFAM: translation elongation factor P; PFAM: Elongation factor P/YeiP protein; Elongation factor KOW domain protein; Elongation factor P; KEGG: cth:Cthe_0847 translation elongation factor P YP_001559630.1 PFAM: creatinase; peptidase M24; KEGG: tte:TTE1280 Xaa-Pro aminopeptidase YP_001559631.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_001559632.1 PFAM: shikimate kinase; KEGG: amt:Amet_0651 chorismate mutase YP_001559633.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; PFAM: HAD-superfamily phosphatase subfamily IIIA; KEGG: cth:Cthe_0855 HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 YP_001559634.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate YP_001559635.1 PFAM: Aldose 1-epimerase; KEGG: tva:TVAG_202440 Aldose 1-epimerase family protein Pfam: Aldose_epim YP_001559636.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: tte:TTE2700 predicted glutamine amidotransferases YP_001559637.1 TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; Miro domain protein; KEGG: cth:Cthe_1794 translation elongation factor G YP_001559638.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: cth:Cthe_1795 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001559639.1 PFAM: amino acid-binding ACT domain protein; Prephenate dehydrogenase; KEGG: cth:Cthe_1796 prephenate dehydrogenase YP_001559640.1 TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: bcy:Bcer98_1242 3-phosphoshikimate 1-carboxyvinyltransferase YP_001559642.1 PFAM: Peptidoglycan-binding LysM YP_001559643.1 KEGG: csc:Csac_2042 SOS-response transcriptional repressor, LexA; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein YP_001559644.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: pth:PTH_0837 uncharacterized homolog of plant iojap protein YP_001559645.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cno:NT01CX_0074 conserved hypothetical protein TIGR00488 YP_001559646.1 KEGG: pth:PTH_0835 nicotinic acid mononucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_001559647.1 PFAM: protein of unknown function UPF0044; KEGG: sar:SAR1672 RNA-binding protein containing KH domain YP_001559648.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; GTP1/OBG domain protein; KEGG: cth:Cthe_0163 GTP1/OBG subdomain containing protein YP_001559649.1 involved in the peptidyltransferase reaction during translation YP_001559650.1 PFAM: protein of unknown function DUF464; KEGG: lsl:LSL_0955 ribosomal protein YP_001559651.1 PFAM: ribosomal protein L21; KEGG: swo:Swol_1613 ribosomal protein L21 YP_001559652.1 PFAM: protein of unknown function DUF45; KEGG: bcz:BCZK0309 conserved hypothetical protein; possible zinc metalloprotease YP_001559653.1 KEGG: mac:MA2899 hypothetical protein YP_001559654.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: csc:Csac_1297 DegV family protein YP_001559655.1 PFAM: regulatory protein MarR; KEGG: efa:EF2886 transcriptional regulator, MarR family YP_001559656.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: cdf:CD1883 AraC-family transcriptional regulator YP_001559657.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cpe:CPE0284 probable transcriptional regulator YP_001559659.1 KEGG: cth:Cthe_1553 hypothetical protein YP_001559660.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cac:CAC3491 protein, related to general stress protein 26(GS26) of B.subtilis (pyridoxinephosphate oxidase family) YP_001559661.1 PFAM: regulatory protein MarR; KEGG: tde:TDE1719 transcriptional regulator, MarR family YP_001559662.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bvu:BVU_3047 transcriptional regulator YP_001559663.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: drm:Dred_2536 ribonuclease, Rne/Rng family YP_001559664.1 KEGG: cth:Cthe_0157 hypothetical protein YP_001559665.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_0156 radical SAM YP_001559667.1 PFAM: glycoside hydrolase family 28; KEGG: bvu:BVU_1985 glycoside hydrolase family 28 YP_001559668.1 KEGG: tte:TTE0796 uncharacterized Fe-S protein YP_001559669.1 PFAM: extracellular solute-binding protein family 1; KEGG: cpe:CPE1030 multiple sugar/glycerol-3P transport system substrate-binding protein YP_001559670.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0795 multiple sugar transport system permease YP_001559671.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2339 ABC transporter, permease YP_001559672.1 PFAM: glycoside hydrolase family 18; SMART: chitinase II; KEGG: bha:BH0916 chitinase YP_001559674.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: swo:Swol_0116 lysyl-tRNA synthetase YP_001559675.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_1438 hypothetical protein YP_001559676.1 KEGG: rbe:RBE_0461 acetyltransferase YP_001559678.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001559680.1 KEGG: cth:Cthe_2451 SNF2-related protein; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SNF2 helicase associated domain protein; SMART: DEAD-like helicases YP_001559681.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: cpf:CPF_1731 sulfate permease, SulP family YP_001559682.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: cth:Cthe_3179 serine-type D-Ala-D-Ala carboxypeptidase YP_001559683.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: cth:Cthe_0688 transcriptional regulator YP_001559684.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: amt:Amet_2531 chromosome segregation and condensation protein ScpA YP_001559686.1 PFAM: metallophosphoesterase; KEGG: cdf:CD1123 phosphoesterase YP_001559687.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: csc:Csac_1744 serine-type D-Ala-D-Ala carboxypeptidase YP_001559688.1 KEGG: cac:CAC3086 protein containing cell adhesion domain YP_001559689.1 PFAM: protein of unknown function DUF214; KEGG: efa:EF1321 permease domain protein YP_001559690.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC0822 ABC transporter, ATP-binding protein YP_001559691.1 KEGG: cno:NT01CX_1499 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain YP_001559692.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_001559693.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: amt:Amet_2523 tyrosine recombinase XerD YP_001559694.1 PFAM: protein of unknown function DUF95 transmembrane; KEGG: bce:BC4092 stage II sporulation protein M YP_001559695.1 PFAM: NUDIX hydrolase; KEGG: tte:TTE1310 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_001559696.1 PFAM: Ig domain protein group 2 domain protein; KEGG: cth:Cthe_0056 Ig-like, group 2 YP_001559697.1 KEGG: ckl:CKL_2277 predicted transposase YP_001559698.1 KEGG: cth:Cthe_1091 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; YmdA/YtgF protein; PFAM: KH type 1 domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KH domain protein YP_001559699.1 KEGG: cdf:CD1986 radical SAM protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001559700.1 TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase_; KEGG: tte:TTE1278 Gamma-glutamyl phosphate reductase YP_001559701.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: cno:NT01CX_1657 5-formyltetrahydrofolate cyclo-ligase family protein YP_001559702.1 PFAM: protein of unknown function DUF896; KEGG: bld:BLi02035 YnzC YP_001559703.1 KEGG: cbe:Cbei_0024 glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase YP_001559704.1 KEGG: cbh:CLC_3373 oxidoreductase, FAD-binding YP_001559705.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: drm:Dred_1437 HI0933 family protein YP_001559706.1 KEGG: tte:TTE1137 hypothetical protein YP_001559707.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: amt:Amet_1383 polysaccharide biosynthesis protein YP_001559708.1 KEGG: cth:Cthe_0155 hypothetical protein YP_001559709.1 PFAM: protein of unknown function UPF0054; KEGG: cno:NT01CX_0046 hypothetical protein YP_001559710.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ckl:CKL_0912 predicted membrane-associated hydrolase YP_001559711.1 PFAM: PhoH family protein; KEGG: tte:TTE0970 Phosphate starvation-inducible protein PhoH, predicted ATPase YP_001559712.1 PFAM: stage IV sporulation YqfD; KEGG: bcy:Bcer98_3032 stage IV sporulation YqfD YP_001559713.1 PFAM: protein of unknown function DUF1429; KEGG: amt:Amet_3035 protein of unknown function DUF1429 YP_001559714.1 PFAM: nitrogen regulatory protein P-II; KEGG: amt:Amet_3184 nitrogen regulatory protein P-II YP_001559715.1 PFAM: protein of unknown function DUF1538; KEGG: cbo:CBO2972 membrane protein YP_001559716.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001559717.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001559718.1 PFAM: Ig domain protein group 2 domain protein; KEGG: cth:Cthe_0056 Ig-like, group 2 YP_001559719.1 KEGG: cth:Cthe_0996 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, epsilon subunit; DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; Exonuclease RNase T and DNA polymerase III; SMART: phosphoesterase PHP domain protein; Exonuclease YP_001559720.1 KEGG: cth:Cthe_0997 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein YP_001559721.1 KEGG: cth:Cthe_0998 membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein YP_001559722.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001559723.1 PFAM: phosphatidate cytidylyltransferase; KEGG: cth:Cthe_1000 phosphatidate cytidylyltransferase YP_001559724.1 KEGG: csc:Csac_2355 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_001559725.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001559726.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: cth:Cthe_1004 uridylate kinase YP_001559727.1 KEGG: mmu:100043744 similar to retinitis pigmentosa GTPase regulator YP_001559728.1 PFAM: regulatory protein ArsR; KEGG: gur:Gura_3531 regulatory protein, ArsR YP_001559730.1 KEGG: sat:SYN_02020 nitroreductase family protein YP_001559731.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lmf:LMOf2365_0426 glyoxalase family protein YP_001559732.1 PFAM: glycoside hydrolase family 43; KEGG: bvu:BVU_1983 glycoside hydrolase family 43, candidate beta-xylosidase/alpha-L-arabinofuranosidase YP_001559733.1 KEGG: cno:NT01CX_2100 flavodoxin YP_001559734.1 PFAM: protein of unknown function DUF861 cupin_3; Ethanolamine utilisation EutQ family protein; KEGG: cdf:CD1925 ethanolamine/propanediol utilization protein YP_001559735.1 PFAM: Ethanolamine utilisation protein EutH; KEGG: cdf:CD1924 ethanolamine/propanediol transporter YP_001559736.1 PFAM: microcompartments protein; KEGG: cdf:CD1923 ethanolamine/propanediol utilization protein YP_001559737.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cpf:CPF_0900 ethanolamine utilization protein EutN YP_001559738.1 KEGG: cdf:CD1921 ethanolamine utilization/propanediol conserved hypothetical protein YP_001559739.1 PFAM: Propanediol utilization protein; KEGG: cpe:CPE0905 probable propanediol utilization protein YP_001559740.1 PFAM: cobalamin adenosyltransferase; KEGG: cpf:CPF_0897 ethanolamine utilization cobalamin adenosyltransferase YP_001559741.1 PFAM: microcompartments protein; KEGG: efa:EF1623 microcompartment protein YP_001559742.1 TIGRFAM: acetaldehyde dehydrogenase (acetylating); PFAM: Aldehyde Dehydrogenase_; KEGG: cdf:CD1917 ethanolamine/propanediol utilisation aldehyde-alcohol dehydrogenase YP_001559743.1 PFAM: microcompartments protein; KEGG: ckl:CKL_0845 predicted microcompartment shellprotein YP_001559744.1 PFAM: microcompartments protein; KEGG: cdf:CD1915 ethanolamine/propanediol utilization protein YP_001559745.1 catalyzes the formation of acetaldehyde from ethanolamine YP_001559746.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: cpf:CPF_0891 ethanolamine ammonia-lyase, large subunit YP_001559747.1 ethanolamine utilization protein EutA YP_001559748.1 TIGRFAM: ethanolamine utilization protein, EutP; KEGG: cpf:CPF_0887 ethanolamine utilization protein, EutP YP_001559749.1 PFAM: microcompartments protein; KEGG: cdf:CD1908 ethanolamine/propanediol utilization protein YP_001559750.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cpf:CPF_0885 alcohol dehydrogenase, iron-containing YP_001559751.1 KEGG: tde:TDE1697 phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase YP_001559752.1 PFAM: AraC protein arabinose-binding/dimerisation; KEGG: cbe:Cbei_4840 helix-turn-helix-domain containing protein, AraC type YP_001559753.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_4840 helix-turn-helix-domain containing protein, AraC type YP_001559754.1 KEGG: bcl:ABC0558 sugar ABC transporter substrate-binding protein YP_001559755.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0557 sugar ABC transporter permease YP_001559756.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease YP_001559757.1 PFAM: aldo/keto reductase; KEGG: cbe:Cbei_3974 aldo/keto reductase YP_001559758.1 PFAM: protein of unknown function DUF303 acetylesterase ; glycoside hydrolase family 2 sugar binding; KEGG: csc:Csac_0206 protein of unknown function DUF303, acetylesterase YP_001559759.1 TIGRFAM: diaminopimelate dehydrogenase; KEGG: cth:Cthe_0922 diaminopimelate dehydrogenase YP_001559760.1 PFAM: Aldose 1-epimerase; KEGG: dge:Dgeo_2023 aldose 1-epimerase YP_001559761.1 PFAM: regulatory protein MarR; KEGG: amt:Amet_2072 transcriptional regulator, MarR family YP_001559762.1 PFAM: glutathione peroxidase; KEGG: fnu:FN2007 glutathione peroxidase YP_001559763.1 PFAM: glutathione peroxidase; KEGG: cpf:CPF_0904 glutathione peroxidase YP_001559764.1 PFAM: transcription factor CarD; KEGG: cdf:CD3037 regulatory protein YP_001559765.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: ctc:CTC02286 threonyl-tRNA synthetase YP_001559766.1 KEGG: amt:Amet_3774 periplasmic binding protein YP_001559767.1 PFAM: regulatory protein TetR; KEGG: cbh:CLC_0816 transcriptional regulator YP_001559768.1 KEGG: cbh:CLC_0817 hypothetical protein YP_001559769.1 PFAM: extracellular solute-binding protein family 3; KEGG: sgo:SGO_0982 amino acid ABC transporter, amino acid-binding protein YP_001559770.1 PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_2512 ABC transporter related YP_001559771.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ste:STER_1541 ABC-type amino acid transport system, permease component YP_001559772.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgo:SGO_0985 amino acid ABC transporter, permease SP0711 YP_001559773.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0487 ABC transporter, ATP-binding protein YP_001559774.1 KEGG: tde:TDE0486 membrane protein YP_001559775.1 PFAM: protein of unknown function DUF990; KEGG: tde:TDE0485 membrane protein YP_001559776.1 KEGG: cbf:CLI_3233 hypothetical protein YP_001559777.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cbf:CLI_3234 radical SAM domain protein YP_001559778.1 PFAM: ribonuclease BN; KEGG: cbe:Cbei_4879 ribonuclease BN YP_001559779.1 TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; Translation elongation factor EFTs/EF1B dimerisation; KEGG: ctc:CTC01262 protein translation elongation factor TS YP_001559780.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001559781.1 KEGG: bpu:BPUM_2222 hypothetical protein YP_001559782.1 KEGG: mmu:20957 synaptonemal complex protein 1 YP_001559784.1 PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 protein of unknown function DUF342 YP_001559785.1 KEGG: lic:LIC11380 RNA polymerase sigma-28 factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2 YP_001559787.1 stimulates methylation of MCP proteins; PFAM: CheD family protein; KEGG: bha:BH2433 methylation of methyl-accepting chemotaxis protein YP_001559788.1 PFAM: CheC domain protein; KEGG: cth:Cthe_0492 CheC, inhibitor of MCP methylation YP_001559789.1 PFAM: CheW domain protein; KEGG: cth:Cthe_0491 CheW protein YP_001559790.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: cth:Cthe_0490 CheA signal transduction histidine kinases YP_001559791.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: cth:Cthe_0489 response regulator receiver modulated CheB methylesterase YP_001559792.1 PFAM: type IV pilus assembly PilZ; KEGG: csc:Csac_1280 type IV pilus assembly PilZ YP_001559793.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cth:Cthe_0487 cobyrinic acid a,c-diamide synthase YP_001559794.1 PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; KEGG: cth:Cthe_0486 GTP-binding signal recognition particle SRP54, G-domain YP_001559795.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: cth:Cthe_0485 flagellar biosynthesis protein FlhA YP_001559796.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: cno:NT01CX_1918 flagellar biosynthetic protein FlhB YP_001559797.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: csc:Csac_1275 flagellar biosynthetic protein FliR YP_001559798.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: cvi:CV_3125 flagellar biosynthetic protein FliQ YP_001559799.1 KEGG: swo:Swol_0865 flagellar biosynthetic protein; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein YP_001559800.1 KEGG: tte:TTE1427 flagellar protein FliO/FliZ YP_001559801.1 PFAM: response regulator receiver; KEGG: csc:Csac_1271 response regulator receiver protein YP_001559802.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 CheC, inhibitor of MCP methylation YP_001559803.1 PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: cth:Cthe_0477 flagellar motor switch protein FliM YP_001559805.1 PFAM: OmpA/MotB domain protein; KEGG: dsy:DSY0295 hypothetical protein YP_001559806.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: amt:Amet_2714 MotA/TolQ/ExbB proton channel YP_001559807.1 PFAM: flagellar FlbD family protein; KEGG: tte:TTE1432 uncharacterized protein, possibly involved in motility YP_001559808.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_0474 protein of unknown function DUF1078-like protein YP_001559809.1 TIGRFAM: flagellar operon protein; KEGG: cth:Cthe_0473 flagellar operon protein YP_001559810.1 PFAM: flagellar hook capping protein; KEGG: cth:Cthe_0472 flagellar hook capping protein YP_001559811.1 PFAM: flagellar hook-length control protein; KEGG: cth:Cthe_0471 flagellar hook-length control protein YP_001559812.1 KEGG: cth:Cthe_0470 hypothetical protein YP_001559813.1 TIGRFAM: flagellar export protein FliJ; KEGG: cth:Cthe_0469 flagellar export protein FliJ YP_001559814.1 KEGG: cth:Cthe_0468 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase YP_001559815.1 KEGG: cth:Cthe_0467 flagellar biosynthesis/type III secretory pathway protein-like protein YP_001559816.1 PFAM: flagellar motor switch protein FliG; KEGG: cth:Cthe_0466 flagellar motor switch protein FliG YP_001559817.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; KEGG: csc:Csac_1257 flagellar M-ring protein FliF YP_001559818.1 PFAM: flagellar hook-basal body complex protein FliE; KEGG: fno:Fnod_1716 flagellar hook-basal body complex subunit FliE YP_001559819.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_0463 flagellar basal-body rod protein FlgC YP_001559820.1 TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: amt:Amet_2728 flagellar basal-body rod protein FlgB YP_001559821.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_001559822.1 KEGG: ckl:CKL_1415 hypothetical protein; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein YP_001559823.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: gme:Gmet_0890 smf protein YP_001559824.1 KEGG: tte:TTE1455 predicted ATPase with chaperone activity; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase YP_001559825.1 PFAM: ATP-cone domain protein; KEGG: cth:Cthe_0450 ribonucleotide reductase regulator NrdR-like protein YP_001559826.1 TIGRFAM: sporulation protein, YlmC/YmxH family; KEGG: cth:Cthe_0449 hypothetical protein YP_001559827.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: dsy:DSY4185 hypothetical protein YP_001559828.1 KEGG: ckl:CKL_2277 predicted transposase YP_001559829.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cbe:Cbei_0450 xylose isomerase domain protein TIM barrel YP_001559830.1 PFAM: polysaccharide deacetylase; KEGG: cac:CAC0358 predicted xylanase/chitin deacetylase YP_001559831.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpu:BPUM_2666 ABC superfamily ATP binding cassette transporter, membrane protein YP_001559832.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2531 binding-protein-dependent transport systems inner membrane component YP_001559833.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3316 extracellular solute-binding protein, family 1 YP_001559834.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_4431 response regulator receiver protein YP_001559835.1 PFAM: lipolytic protein G-D-S-L family; KEGG: bld:BLi04100 hypothetical protein YP_001559836.1 PFAM: glycoside hydrolase family 28; KEGG: amt:Amet_0899 glycoside hydrolase, family 28 YP_001559837.1 PFAM: glycosyl hydrolase family 88; KEGG: amt:Amet_0895 glycosyl hydrolase, family 88 YP_001559838.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate YP_001559839.1 PFAM: PfkB domain protein; KEGG: bth:BT_0488 2-dehydro-3-deoxygluconokinase YP_001559840.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: bth:BT_0486 altronate hydrolase YP_001559841.1 catalyzes the formation of D-tagaturonate from D-altronate YP_001559842.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: yen:YE1255 regulatory protein YP_001559843.1 PFAM: Glucuronate isomerase; KEGG: cbe:Cbei_1832 glucuronate isomerase YP_001559844.1 KEGG: ret:RHE_PF00314 hypothetical protein YP_001559849.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001559850.1 involved in the allosteric regulation of aspartate carbamoyltransferase YP_001559851.1 PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: dsy:DSY0205 hypothetical protein YP_001559852.1 PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: oih:OB2060 hypothetical protein YP_001559853.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: oih:OB2059 hypothetical conserved protein YP_001559855.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_03105 histone acetyltransferase HPA2/related acetyltransferase YP_001559856.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: cth:Cthe_3039 cell divisionFtsK/SpoIIIE YP_001559857.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_001559858.1 PFAM: peptidase S14 ClpP; KEGG: cth:Cthe_1097 peptidase S14, ClpP YP_001559859.1 KEGG: bfs:BF3351 cysteine biosynthesis related protein; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_001559860.1 PFAM: peptidase M16 domain protein; KEGG: cth:Cthe_0419 peptidase M16-like protein YP_001559861.1 PFAM: sugar-specific permease EIIA 1 domain; KEGG: lpl:lp_3229 beta-glucosides PTS, EIIBCA YP_001559862.1 KEGG: cth:Cthe_0418 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein YP_001559863.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cth:Cthe_1384 FolC bifunctional protein YP_001559864.1 KEGG: ctc:CTC01689 hypothetical protein YP_001559865.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_1419 MATE efflux family protein YP_001559866.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_001559867.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: cno:NT01CX_1154 Na/Pi cotransporter family protein YP_001559868.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bce:BC0583 transcriptional regulator, GntR family / aminotransferase class-I YP_001559869.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: cth:Cthe_0987 riboflavin biosynthesis protein RibF YP_001559870.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: cth:Cthe_0988 tRNA pseudouridine synthase B YP_001559871.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cbe:Cbei_1204 phosphoesterase, RecJ domain protein YP_001559872.1 PFAM: ribosome-binding factor A; KEGG: tte:TTE1392 ribosome-binding factor A YP_001559873.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Miro domain protein; KEGG: dsy:DSY2517 hypothetical protein YP_001559874.1 PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: cdf:CD1308 ribosomal protein YP_001559875.1 PFAM: protein of unknown function DUF448; KEGG: cbe:Cbei_1200 protein of unknown function DUF448 YP_001559876.1 TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; NusA domain protein; KEGG: tte:TTE1396 transcription terminator YP_001559877.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_001559878.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; KEGG: cpf:CPF_0664 BirA bifunctional protein YP_001559879.1 PFAM: Rubrerythrin; KEGG: cdf:CD2845 rubrerythrin YP_001559881.1 TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: cth:Cthe_2889 phosphoribosyl-AMP cyclohydrolase YP_001559882.1 KEGG: cth:Cthe_2887 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein YP_001559883.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: cth:Cthe_2884 imidazoleglycerol-phosphate dehydratase YP_001559884.1 PFAM: histidinol dehydrogenase; KEGG: cth:Cthe_2882 histidinol dehydrogenase YP_001559885.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_001559886.1 PFAM: tRNA synthetase class II (G H P and S); KEGG: cth:Cthe_2880 histidyl-tRNA synthetase YP_001559887.1 PFAM: Recombination protein U; KEGG: gka:GK2167 recombination protein U (penicillin-binding protein related factor A) YP_001559888.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cpf:CPF_1414 pseudouridine synthase, RluA family YP_001559889.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tva:TVAG_463690 haloacid dehalogenase-like hydrolase family protein Pfam: Hydrolase YP_001559890.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: lmo:lmo2342 pseudouridylate synthase YP_001559891.1 PFAM: Fmu (Sun) domain protein; KEGG: cth:Cthe_3160 RNA methylase, NOL1/NOP2/sun family YP_001559892.1 PFAM: RelA/SpoT domain protein; KEGG: amt:Amet_3678 RelA/SpoT domain protein YP_001559893.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cno:NT01CX_0361 cell envelope-related transcriptional attenuator YP_001559894.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cpr:CPR_0598 cell envelope-related transcriptional attenuator domain family YP_001559895.1 KEGG: cpe:CPE2148 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001559896.1 PFAM: protein of unknown function DUF711; KEGG: mla:Mlab_1030 hypothetical protein YP_001559897.1 ACT domain-containing protein YP_001559898.1 PFAM: beta-lactamase domain protein; KEGG: cdf:CD3651 metallo-beta-lactamase superfamily protein YP_001559899.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: cth:Cthe_1282 diguanylate cyclase with GAF sensor YP_001559900.1 KEGG: ctc:CTC00985 cell division protein FtsA YP_001559901.1 KEGG: tte:TTE0875 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_001559902.1 KEGG: cth:Cthe_0886 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2 YP_001559904.1 KEGG: dme:Dmel_CG2839 CG2839 YP_001559905.1 KEGG: cbf:CLI_0985 hypothetical protein YP_001559906.1 PFAM: glycosyl transferase family 2; KEGG: chy:CHY_0980 glycosyl transferase, group 2 family YP_001559907.1 KEGG: ctc:CTC00440 alpha-clostripain-like protein YP_001559908.1 KEGG: bps:BPSS1434 membrane-anchored cell surface protein YP_001559909.1 PFAM: glycosyl transferase family 2; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: amt:Amet_3406 glycosyl transferase, family 2 YP_001559910.1 PFAM: glycosyl transferase group 1; TPR repeat-containing protein; KEGG: dsy:DSY4437 hypothetical protein YP_001559912.1 PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_C1281 glycosyl transferase YP_001559913.1 PFAM: glycosyl transferase family 2; Methyltransferase type 11; Methyltransferase type 12; KEGG: cbe:Cbei_2586 glycosyl transferase, family 2 YP_001559914.1 PFAM: Rubrerythrin; KEGG: cac:CAC3002 uncharacterized consrved protein, YHJR B.subtilis family YP_001559915.1 KEGG: cbf:CLI_0985 hypothetical protein YP_001559916.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpf:CPF_2886 serine protease C YP_001559917.1 PFAM: cell wall hydrolase/autolysin; KEGG: tte:TTE2424 N-acetylmuramoyl-L-alanine amidase YP_001559918.1 PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: tte:TTE1266 leader peptidase (prepilin peptidase) / N-methyltransferase YP_001559919.1 KEGG: spi:MGAS10750_Spy0312 pyruvate formate-lyase activating enzyme; TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein YP_001559920.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit YP_001559922.1 KEGG: bcy:Bcer98_0431 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: pyruvate formate-lyase PFL YP_001559923.1 PFAM: Domain of unknown function DUF1846; KEGG: spm:spyM18_1356 hypothetical protein YP_001559924.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: cth:Cthe_2810 Na/Pi-cotransporter II-related protein YP_001559925.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cth:Cthe_1599 multi-sensor signal transduction histidine kinase YP_001559926.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1600 two component transcriptional regulator, winged helix family YP_001559927.1 KEGG: ctc:CTC00912 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001559928.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sus:Acid_6283 integral membrane sensor signal transduction histidine kinase YP_001559929.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: cth:Cthe_1601 phosphate uptake regulator, PhoU YP_001559930.1 KEGG: mta:Moth_0114 phosphate transport system permease 1; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001559931.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_0606 phosphate ABC transporter, permease YP_001559932.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VVA0370 ABC-type phosphate transport system, permease component YP_001559933.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: drm:Dred_2106 phosphate binding protein YP_001559934.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cdf:CD1476 signaling protein YP_001559935.1 PFAM: Peptidoglycan-binding LysM; KEGG: mtc:MT0291.4 hypothetical protein YP_001559936.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cth:Cthe_1329 CoA-substrate-specific enzyme activase YP_001559937.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: pth:PTH_0142 hypothetical protein YP_001559938.1 TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: gka:GK3421 uracil-DNA glycosylase YP_001559939.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001559940.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001559941.1 KEGG: ehi:82.t00025 viral A-type inclusion protein repeat, Pfam: Nha1_C DUF148 ERM Prefoldin_2 WXG100 Vicilin_N TBPIP Myosin_tail_1 Filament YscO Bacillus_HBL EzrA DUF948 Rab5-bind Laminin_I MpPF2 Vps51 MSG Spectrin LMP PROSITE: GLU_RICH LYS_RICH YP_001559942.1 PFAM: response regulator receiver; CheW domain protein; KEGG: amt:Amet_2732 CheW protein YP_001559943.1 PFAM: aminotransferase class V; KEGG: cbe:Cbei_0585 cysteine desulfurase YP_001559944.1 KEGG: cbf:CLI_0727 hypothetical protein YP_001559945.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_001559946.1 transports degraded pectin products into the bacterial cell YP_001559947.1 PFAM: glycoside hydrolase family 4; KEGG: csc:Csac_2748 glycoside hydrolase, family 4 YP_001559948.1 PFAM: NLP/P60 protein; KEGG: cno:NT01CX_2157 N-acetylmuramoyl-L-alanine amidase CwlL precursor (cellwall hydrolase) (autolysin) YP_001559949.1 TIGRFAM: phage holin, LL-H family; PFAM: holin LL-H; KEGG: amt:Amet_2546 hypothetical protein YP_001559950.1 KEGG: cno:NT01CX_1180 hypothetical protein YP_001559953.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cbe:Cbei_1732 integral membrane sensor signal transduction histidine kinase YP_001559954.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbe:Cbei_1731 two component transcriptional regulator, winged helix family YP_001559956.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: lbr:LVIS_1174 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family YP_001559957.1 PFAM: thymidine kinase; KEGG: hdu:HD1473 thymidine kinase YP_001559958.1 PFAM: helix-turn-helix domain protein; KEGG: btk:BT9727_1061 probable transcriptional regulator YP_001559959.1 PFAM: response regulator receiver; KEGG: cdf:CD0533 chemotaxis protein YP_001559961.1 KEGG: cth:Cthe_1311 signal transduction histidine kinase regulating citrate/malate metabolism YP_001559962.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sae:NWMN_2605 cold shock protein CspB YP_001559963.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_001559964.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: tte:TTE0985 tmRNA-binding protein YP_001559965.1 KEGG: ctc:CTC00384 exoribonuclease II; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein YP_001559966.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: csc:Csac_1317 preprotein translocase, SecG subunit YP_001559967.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_001559968.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cpf:CPF_1409 MATE efflux family protein YP_001559969.1 PFAM: protein of unknown function DUF6 transmembrane; sugar transport family protein; KEGG: cbh:CLC_0948 drug/metabolite transporter, DMT family YP_001559970.1 KEGG: tde:TDE2413 hypothetical protein YP_001559971.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_001559972.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_001559973.1 KEGG: fth:FTH_1121 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_001559974.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: ana:alr2975 signal peptidase I YP_001559975.1 KEGG: cbh:CLC_2291 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_001559976.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: amt:Amet_2789 DNA-directed RNA polymerase, omega subunit YP_001559977.1 PFAM: protein of unknown function DUF370; KEGG: bay:RBAM_015500 YlzA YP_001559978.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: cpr:CPR_1721 conserved hypothetical protein TIGR00255 YP_001559979.1 KEGG: cbe:Cbei_2464 GTPase (G3E family)-like protein YP_001559980.1 PFAM: cobalamin synthesis protein P47K; KEGG: cbe:Cbei_2463 cobalamin synthesis protein, P47K YP_001559981.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cdf:CD1666 glycerophosphoryl diester phosphodiesterase YP_001559982.1 PFAM: major facilitator superfamily MFS_1; KEGG: pab:PAB2174 hypothetical protein YP_001559983.1 KEGG: mba:Mbar_A0504 hypothetical protein YP_001559984.1 PFAM: glycosyl transferase family 2; KEGG: pth:PTH_1466 glycosyltransferases YP_001559985.1 KEGG: msi:Msm_1502 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like YP_001559986.1 KEGG: cth:Cthe_2151 hypothetical protein YP_001559987.1 KEGG: amt:Amet_2770 ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001559988.1 PFAM: Dak phosphatase; KEGG: amt:Amet_2771 Dak phosphatase YP_001559989.1 PFAM: protein of unknown function DUF322; KEGG: oih:OB1515 hypothetical protein YP_001559990.1 PFAM: ribosomal protein L28; KEGG: swo:Swol_0757 50S ribosomal protein L28 YP_001559991.1 KEGG: swo:Swol_1906 hypothetical protein YP_001559992.1 KEGG: tva:TVAG_264660 hypothetical protein Pfam: RNA_polI_A34 MAP7 FYDLN_acid PROSITE: ASP_RICH GLU_RICH LYS_RICH YP_001559994.1 KEGG: tte:TTE1994 hypothetical protein YP_001559996.1 KEGG: oih:OB2135 ABC-2 type transport system permease YP_001559997.1 KEGG: cdf:CD3394 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_001559998.1 KEGG: cno:NT01CX_0663 hypothetical protein YP_001559999.1 PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein YP_001560000.1 KEGG: csc:Csac_2251 histidinol phosphate phosphatase HisJ family; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein YP_001560001.1 PFAM: protein of unknown function DUF925; KEGG: cps:CPS_3132 hypothetical protein YP_001560002.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001560003.1 TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein; KEGG: amt:Amet_2454 nitrogen-fixing NifU domain protein YP_001560004.1 KEGG: cth:Cthe_0720 aminotransferase, class V; TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001560005.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: cth:Cthe_2688 polysaccharide biosynthesis protein YP_001560006.1 KEGG: gsu:GSU2377 hypothetical protein YP_001560008.1 PFAM: cytochrome P450; KEGG: cac:CAC3330 cytochrome P450 family protein, YBDT B.subtilis ortholog YP_001560009.1 PFAM: helix-turn-helix domain protein; KEGG: dsy:DSY3594 hypothetical protein YP_001560010.1 KEGG: dsy:DSY3591 hypothetical protein YP_001560011.1 KEGG: bad:BAD_0608 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_001560012.1 PFAM: amine oxidase; KEGG: cbe:Cbei_4105 amine oxidase YP_001560013.1 KEGG: bth:BT_4485 hypothetical protein YP_001560014.1 PFAM: protein of unknown function DUF419; KEGG: bay:RBAM_005300 hypothetical protein YP_001560016.1 PFAM: protein of unknown function DUF1565; KEGG: sde:Sde_2946 hypothetical protein YP_001560017.1 KEGG: spd:SPD_0495 hypothetical protein YP_001560019.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: ppe:PEPE_0535 superfamily II DNA/RNA helicase, SNF2 family YP_001560020.1 KEGG: bad:BAD_1231 hypothetical protein YP_001560021.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: mbu:Mbur_1539 DNA-cytosine methyltransferase YP_001560022.1 PFAM: homoserine O-succinyltransferase; KEGG: bha:BH2280 homoserine O-succinyltransferase YP_001560023.1 KEGG: cac:CAC2673 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase YP_001560024.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cpe:CPE2313 pseudouridylate synthase YP_001560028.1 KEGG: cbf:CLI_1258 hypothetical protein YP_001560029.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cth:Cthe_0408 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_001560030.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_001560031.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cno:NT01CX_0467 glutamate synthase, small subunit YP_001560032.1 KEGG: cth:Cthe_0556 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase YP_001560033.1 PFAM: ATP-binding region ATPase domain protein; KEGG: amt:Amet_0102 signal transduction histidine kinase regulating citrate/malate metabolism YP_001560034.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: amt:Amet_3563 two component transcriptional regulator, LytTR family YP_001560035.1 PFAM: band 7 protein; KEGG: fnu:FN1549 stomatin like protein YP_001560036.1 PFAM: protein of unknown function DUF107; KEGG: aau:AAur_2191 integral membrane protein YP_001560037.1 KEGG: san:gbs0669 hypothetical protein YP_001560038.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: cpf:CPF_1412 ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_001560039.1 KEGG: cpf:CPF_1567 hypothetical protein YP_001560040.1 KEGG: dsy:DSY4643 hypothetical protein YP_001560041.1 TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: cth:Cthe_1704 toxin secretion/phage lysis holin YP_001560043.1 KEGG: tva:TVAG_050640 BNR/Asp-box repeat family protein YP_001560044.1 KEGG: ckl:CKL_3246 hypothetical protein YP_001560045.1 KEGG: cdf:CD2899 phage protein YP_001560046.1 PFAM: Baseplate J family protein; KEGG: cdf:CD2900 phage tail protein YP_001560047.1 KEGG: cdf:CD2901 phage protein YP_001560048.1 KEGG: dsy:DSY3951 hypothetical protein YP_001560049.1 KEGG: cdf:CD2903 phage cell wall hydrolase YP_001560050.1 PFAM: Peptidoglycan-binding LysM; KEGG: cdf:CD2904 phage cell wall hydrolase YP_001560051.1 KEGG: cbo:CBO1737 phage protein YP_001560052.1 PFAM: XkdN-like protein; KEGG: cdf:CD2908 phage protein YP_001560053.1 KEGG: cdf:CD2909 phage protein YP_001560054.1 KEGG: cdf:CD2910 phage protein YP_001560055.1 KEGG: cdf:CD2910A hypothetical protein YP_001560056.1 KEGG: cdf:CD2911 phage protein YP_001560057.1 KEGG: cdf:CD2912 phage protein YP_001560058.1 KEGG: cdf:CD2913 phage protein YP_001560059.1 KEGG: cbf:CLI_2413 hypothetical protein YP_001560060.1 KEGG: cbf:CLI_2414 phage coat protein YP_001560061.1 KEGG: cno:NT01CX_2174 scaffold protein YP_001560062.1 KEGG: lin:lin0103 hypothetical protein YP_001560064.1 KEGG: cpf:CPF_0953 hypothetical protein YP_001560065.1 TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7; KEGG: cdf:CD2920 phage protein YP_001560066.1 TIGRFAM: phage portal protein, SPP1 family; PFAM: portal protein SPP1; KEGG: lga:LGAS_0668 phage portal protein, SPP1 GP6-like YP_001560067.1 TIGRFAM: phage uncharacterized protein; KEGG: cbf:CLI_2421 hypothetical protein YP_001560068.1 KEGG: bha:BH3534 hypothetical protein YP_001560071.1 KEGG: drm:Dred_2611 hypothetical protein YP_001560073.1 KEGG: pgi:PG0854 hypothetical protein YP_001560080.1 KEGG: drm:Dred_2613 superfamily II helicase and inactivated derivatives-like protein YP_001560081.1 PFAM: zinc finger CHC2-family protein; KEGG: ppd:Ppro_0215 zinc finger, CHC2-family protein YP_001560083.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cno:NT01CX_0884 single-stranded DNA binding protein YP_001560084.1 KEGG: sgl:SG0930 hypothetical protein YP_001560085.1 KEGG: tva:TVAG_368940 Kelch motif family protein Pfam: RhoGEF Kelch_1 Kelch_2 RNA_polI_A34 U79_P34 TolA DUF1217 PROSITE: PENTAXIN GLU_RICH LYS_RICH DH_2 YP_001560087.1 SMART: metal-dependent phosphohydrolase HD region; KEGG: cac:CAC1938 predicted HD superfamily hydrolase YP_001560088.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: oih:OB0045 transcriptional pleiotropic regulator of transition state genes YP_001560089.1 KEGG: lsl:LSL_1861 phage-related DNA binding protein YP_001560090.1 PFAM: helix-turn-helix domain protein; KEGG: bce:BC3704 LexA repressor YP_001560091.1 PFAM: protein of unknown function DUF955 YP_001560093.1 PFAM: Resolvase domain; Recombinase; KEGG: cdf:CD2952 phage site-specific recombinase YP_001560094.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; KEGG: tte:TTE0030 Cation transport ATPases YP_001560095.1 PFAM: thioesterase superfamily protein; KEGG: smu:SMU.795 conserved hypothetical protein; probable esterase YP_001560096.1 PFAM: conserved hypothetical protein; KEGG: lbu:LBUL_0756 hypothetical protein YP_001560097.1 PFAM: enolase; KEGG: cth:Cthe_0143 phosphopyruvate hydratase YP_001560098.1 PFAM: protein of unknown function DUF1058; cell wall hydrolase SleB; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: cdf:CD3563 spore cortex-lytic enzyme YP_001560099.1 PFAM: GCN5-related N-acetyltransferase; KEGG: drm:Dred_2229 hypothetical protein YP_001560100.1 KEGG: dsy:DSY1282 hypothetical protein YP_001560101.1 PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; KEGG: cpr:CPR_2131 CBS domain protein YP_001560102.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: cpe:CPE0690 argininosuccinate lyase YP_001560103.1 KEGG: bcz:BCZK4583 conserved hypothetical protein; possible permease YP_001560104.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:BCZK4584 ABC transporter, ATP-binding protein YP_001560105.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: cbe:Cbei_4674 glycoside hydrolase, family 3 domain protein YP_001560106.1 PFAM: glycoside hydrolase family 10; KEGG: csc:Csac_2408 endo-1,4-beta-xylanase YP_001560107.1 PFAM: glycoside hydrolase family 43; KEGG: oih:OB2087 arabinofuranosidase YP_001560108.1 PFAM: SufBD protein; KEGG: cdf:CD3607 hypothetical protein YP_001560109.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD3608 ABC transporter, ATP-binding protein YP_001560110.1 KEGG: cac:CAC2917 acetyl esterase family enzyme YP_001560111.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cno:NT01CX_1509 integral membrane protein with CBS domains YP_001560112.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: cbf:CLI_1211 magnesium transporter YP_001560113.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dsy:DSY3438 hypothetical protein YP_001560114.1 PFAM: protein of unknown function DUF134; KEGG: csc:Csac_0224 protein of unknown function DUF134 YP_001560115.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_1760 MATE efflux family protein YP_001560116.1 KEGG: amt:Amet_3402 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase; Acetohydroxy acid isomeroreductase catalytic domain protein YP_001560117.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: cbe:Cbei_0212 acetolactate synthase, small subunit YP_001560118.1 PFAM: Heparinase II/III family protein; KEGG: cpr:CPR_0402 hypothetical protein YP_001560119.1 PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: cpe:CPE0324 probable glycosyl hydrolase YP_001560120.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: rsh:Rsph17029_1581 PHP C-terminal domain protein YP_001560121.1 PFAM: major facilitator superfamily MFS_1; KEGG: dps:DP1499 related to glycerol-3-phosphate transporter YP_001560122.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: rsh:Rsph17029_1581 PHP C-terminal domain protein YP_001560123.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PF00303 sugar ABC transporter, substrate-binding protein YP_001560124.1 SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: bvu:BVU_0535 glycoside hydrolase family 29, candidate alpha-L-fucosidase YP_001560125.1 PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 unsaturated glucuronyl hydrolase YP_001560126.1 PFAM: conserved hypothetical protein; KEGG: cpf:CPF_0553 conserved hypothetical protein TIGR02336 YP_001560127.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0318 sugar ABC transporter permease YP_001560128.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2233 ABC transporter, permease YP_001560129.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: bld:BLi00440 ABC transporter (permease); RBL00398 YP_001560130.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_0684 response regulator receiver protein YP_001560131.1 KEGG: dsy:DSY3902 hypothetical protein YP_001560132.1 PFAM: ApbE family lipoprotein; KEGG: cpf:CPF_2491 ApbE family protein YP_001560133.1 PFAM: adenylosuccinate synthetase; KEGG: deb:DehaBAV1_0867 adenylosuccinate synthase YP_001560134.1 KEGG: mpt:Mpe_B0284 dUTP diphosphatase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_001560135.1 catalyzes the removal of amino acids from the N termini of peptides YP_001560136.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cth:Cthe_0553 transcriptional regulator, LysR family YP_001560137.1 PFAM: Aldehyde Dehydrogenase_; KEGG: tde:TDE2512 aldehyde dehydrogenase (NADP) family protein YP_001560138.1 PFAM: protein of unknown function DUF188; KEGG: cac:CAC2825 uncharacterized conserved protein, YQXD B.subtilis ortholog YP_001560139.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001560140.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: cth:Cthe_1249 amidophosphoribosyltransferase YP_001560141.1 KEGG: csc:Csac_1999 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase YP_001560142.1 PFAM: protein of unknown function DUF1653; KEGG: cac:CAC1208 hypothetical protein YP_001560144.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: llm:llmg_0282 anaerobic ribonucleoside-triphosphate reductase activating protein YP_001560145.1 PFAM: regulatory protein MerR; KEGG: dsy:DSY0175 hypothetical protein YP_001560146.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001560147.1 TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: cbe:Cbei_4408 carboxynorspermidine decarboxylase YP_001560148.1 PFAM: Saccharopine dehydrogenase; KEGG: bha:BH3957 hypothetical protein YP_001560149.1 TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: cpe:CPE0551 probable agmatinase YP_001560150.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_001560151.1 PFAM: aminotransferase class V; Orn/Lys/Arg decarboxylase major region; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Orn/Lys/Arg decarboxylase domain protein; KEGG: dsy:DSY0236 hypothetical protein YP_001560152.1 PFAM: glycoside hydrolase clan GH-D; KEGG: csc:Csac_1118 glycoside hydrolase, clan GH-D YP_001560153.1 PFAM: CBS domain containing protein; KEGG: cdf:CD1356 regulatory protein YP_001560155.1 KEGG: amt:Amet_1218 domain of unknown function DUF1893 YP_001560156.1 KEGG: cbh:CLC_0541 hypothetical protein YP_001560157.1 PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tte:TTE2520 predicted oxidoreductases of the aldo/keto reductase family YP_001560158.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: tte:TTE0576 subtilisin-like serine protease YP_001560159.1 PFAM: peptidase M23B; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: cth:Cthe_0734 peptidase M23B YP_001560162.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpe:CPE0834 probable ABC transporter YP_001560163.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_0829 ABC transporter, ATP-binding protein YP_001560164.1 PFAM: regulatory protein ArsR; KEGG: bay:RBAM_027430 NrsE YP_001560165.1 PFAM: polysaccharide deacetylase; KEGG: bsu:BG13184 similar to endo-1,4-beta-xylanase YP_001560166.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex YP_001560167.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex YP_001560168.1 PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: cth:Cthe_2267 sodium-transporting two-sector ATPase YP_001560169.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex YP_001560170.1 PFAM: H+transporting two-sector ATPase C (AC39) subunit; KEGG: cth:Cthe_2265 H+-transporting two-sector ATPase, C (AC39) subunit YP_001560171.1 PFAM: H+transporting two-sector ATPase E subunit; KEGG: cbf:CLI_2693 V-type ATPase, E subunit YP_001560172.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits YP_001560173.1 PFAM: V-type ATPase 116 kDa subunit; KEGG: cth:Cthe_2262 V-type ATPase, 116 kDa subunit YP_001560175.1 PFAM: protein of unknown function DUF1312; KEGG: aeh:Mlg_0352 hypothetical protein YP_001560176.1 KEGG: bsu:BG12861 hypothetical protein YP_001560177.1 PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: bfr:BF1741 beta-galactosidase YP_001560178.1 KEGG: mmq:MmarC5_0860 amino acid-binding ACT domain protein YP_001560179.1 KEGG: mmz:MmarC7_1742 phenylacetate--CoA ligase YP_001560180.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: ckl:CKL_1659 predicted transposase YP_001560181.1 PFAM: amino acid-binding ACT domain protein; KEGG: drm:Dred_2883 amino acid-binding ACT domain protein YP_001560182.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: cth:Cthe_0614 pyruvate ferredoxin/flavodoxin oxidoreductase YP_001560183.1 TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: cth:Cthe_0613 thiamine pyrophosphate enzyme-like TPP-binding YP_001560184.1 PFAM: protein of unknown function DUF1113; KEGG: cdf:CD2159 hypothetical protein YP_001560185.1 PFAM: Na+/solute symporter; KEGG: cth:Cthe_0612 SSS sodium solute transporter superfamily YP_001560186.1 KEGG: mmq:MmarC5_1515 phenylacetate--CoA ligase YP_001560187.1 KEGG: mmu:100039486 similar to keratin associated protein 6-2 YP_001560188.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001560189.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY3380 hypothetical protein YP_001560190.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cth:Cthe_3159 transcriptional regulator, GntR family YP_001560191.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: mtp:Mthe_0549 isocitrate dehydrogenase (NAD(+)) YP_001560192.1 PFAM: pyruvate carboxyltransferase; KEGG: cth:Cthe_3157 pyruvate carboxyltransferase YP_001560193.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: amt:Amet_3812 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001560194.1 KEGG: amt:Amet_3811 hypothetical protein YP_001560195.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_001560196.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_001560197.1 PFAM: glycosyl transferase family 2; KEGG: spd:SPD_0321 glycosyl transferase, group 2 family protein YP_001560198.1 PFAM: glycosyl transferase family 2; KEGG: spt:SPA0786 rhamnosyltransferase YP_001560199.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: spi:MGAS10750_Spy0250 oligopeptide transport ATP-binding protein OppF YP_001560200.1 KEGG: spi:MGAS10750_Spy0249 oligopeptide transport ATP-binding protein OppD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001560201.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spi:MGAS10750_Spy0248 oligopeptide transport system permease OppC YP_001560202.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sae:NWMN_0856 oligopeptide transport system permease YP_001560203.1 PFAM: extracellular solute-binding protein family 5; KEGG: spi:MGAS10750_Spy0246 oligopeptide-binding protein OppA YP_001560204.1 PFAM: glycoside hydrolase family 25; KEGG: cbf:CLI_0852 glycosyl hydrolase, family 25 YP_001560205.1 KEGG: swo:Swol_0934 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_001560206.1 PFAM: sodium/hydrogen exchanger; KEGG: cdf:CD0657 Na(+)/H(+) antiporter YP_001560207.1 PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: cbe:Cbei_2232 serine dehydratase alpha chain YP_001560208.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: cdf:CD2120 2-nitropropane dioxygenase YP_001560209.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cbe:Cbei_3741 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_001560210.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0028 ABC transporter, ATP-binding protein, HlyB family YP_001560211.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpr:CPR_0817 antibiotic ABC transporter, ATP-binding protein YP_001560212.1 KEGG: tde:TDE0032 histidine kinase-related ATPase YP_001560213.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: tde:TDE0033 DNA-binding response regulator YP_001560214.1 KEGG: cbo:CBO2129 hypothetical protein YP_001560215.1 KEGG: cbe:Cbei_2369 AAA ATPase YP_001560216.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_1771 rubrerythrin YP_001560217.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_001560218.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cbe:Cbei_4042 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein YP_001560219.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ckl:CKL_3663 hypothetical protein YP_001560220.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi02251 hypothetical protein YP_001560221.1 PFAM: metallophosphoesterase; KEGG: cbe:Cbei_0077 metallophosphoesterase YP_001560222.1 PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: xla:100037187 hypothetical protein LOC100037187 YP_001560223.1 KEGG: lla:L65707 unknown protein YP_001560226.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: dsy:DSY0076 hypothetical protein YP_001560227.1 PFAM: NUDIX hydrolase; KEGG: mac:MA1648 MutT/NUDIX family protein YP_001560228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cpf:CPF_1157 acetyltransferase, GNAT family YP_001560229.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tth:TTC0848 acetyltransferase YP_001560230.1 PFAM: NUDIX hydrolase; KEGG: smu:SMU.561c hydrolase (MutT family) YP_001560232.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: cdf:CD1883 AraC-family transcriptional regulator YP_001560234.1 KEGG: cpf:CPF_0144 hypothetical protein YP_001560235.1 KEGG: bth:BT_2346 iron-sulfur cluster-binding protein YP_001560236.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: cbh:CLC_0768 transcriptional regulator, AraC family YP_001560237.1 catalyzes the formation of inosine from adenosine YP_001560238.1 KEGG: ssv:SSU98_1061 hypothetical protein YP_001560239.1 PFAM: integrase family protein; KEGG: tte:TTE2127 integrase YP_001560240.1 KEGG: mla:Mlab_1274 nitrogenase subunit NifH (ATPase)-like protein YP_001560241.1 KEGG: spb:M28_Spy1740 translation initiation inhibitor YP_001560242.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: cac:CAC3514 reverse transcriptase/maturase family protein YP_001560243.1 PFAM: cyclic nucleotide-binding; KEGG: cth:Cthe_0034 cyclic nucleotide-binding protein YP_001560244.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cth:Cthe_0035 4Fe-4S ferredoxin, iron-sulfur binding YP_001560245.1 KEGG: bce:BC2977 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_001560246.1 PFAM: Methyltransferase type 11; KEGG: mma:MM_0449 SAM-dependent methyltransferase YP_001560247.1 PFAM: RbsD or FucU transport; KEGG: cpf:CPF_1050 fucose operon protein FucU YP_001560248.1 PFAM: carbohydrate kinase FGGY; KEGG: cpf:CPF_1049 L-fuculokinase YP_001560249.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose YP_001560250.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: cpf:CPF_1047 transcriptional regulator, AraC family YP_001560252.1 PFAM: glycosyl hydrolase 67 C-teriminal domain protein; Glycosyl hydrolase 67 middle domain protein; KEGG: bha:BH1061 alpha-glucuronidase YP_001560253.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_4840 helix-turn-helix-domain containing protein, AraC type YP_001560254.1 PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: cth:Cthe_2197 carbohydrate binding family 6 YP_001560255.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: ckl:CKL_2513 hypothetical protein YP_001560256.1 KEGG: cbe:Cbei_4073 regulatory protein, LuxR YP_001560257.1 KEGG: rxy:Rxyl_1168 peptidase M29, aminopeptidase II YP_001560258.1 PFAM: transcriptional regulator PadR family protein; KEGG: ctc:CTC00619 regulatory protein (PadR family) YP_001560259.1 KEGG: ctc:CTC00620 hypothetical protein YP_001560260.1 PFAM: branched-chain amino acid transport; KEGG: bsu:BG11916 branched-chain amino acid transport protein YP_001560261.1 PFAM: AzlC family protein; KEGG: bsu:BG11915 branched-chain amino acid transport protein YP_001560262.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: cbh:CLC_2103 O-acetyltransferase family protein YP_001560263.1 KEGG: blo:BL1242 hypothetical protein YP_001560264.1 KEGG: llm:llmg_2248 abortive phage resistance YP_001560265.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: sfu:Sfum_0306 2-isopropylmalate synthase YP_001560266.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_001560267.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_2056 MATE efflux family protein YP_001560268.1 PFAM: transcription activator effector binding; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_2042 transcription activator, effector binding YP_001560269.1 PFAM: Integrase catalytic region; KEGG: cbe:Cbei_0719 integrase, catalytic region YP_001560270.1 PFAM: transposase IS3/IS911 family protein; KEGG: lga:LGAS_1507 transposase YP_001560271.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: cth:Cthe_0568 methionyl-tRNA formyltransferase YP_001560273.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bha:BH0355 hypothetical protein YP_001560274.1 KEGG: dsy:DSY1735 hypothetical protein YP_001560275.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: dsy:DSY1233 hypothetical protein YP_001560276.1 PFAM: Domain of unknown function DUF1905; KEGG: dsy:DSY1232 hypothetical protein YP_001560277.1 KEGG: dsy:DSY1232 hypothetical protein YP_001560278.1 KEGG: bcz:pE33L466_0246 hypothetical protein YP_001560279.1 KEGG: rca:Rcas_0978 hypothetical protein YP_001560280.1 KEGG: cth:Cthe_0378 hypothetical protein YP_001560284.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: btk:BT9727_3018 conserved hypothetical protein, possible microcin C7 self-immunity protein YP_001560285.1 PFAM: GCN5-related N-acetyltransferase; KEGG: wsu:WS1543 conserved hypothetical protein-acetyltransferase, including N-acetylase of ribosomal proteins YP_001560286.1 KEGG: blo:BL0186 possible esterase YP_001560288.1 KEGG: bfr:BF1721 hypothetical protein YP_001560289.1 PFAM: GCN5-related N-acetyltransferase YP_001560290.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mba:Mbar_A2327 methylase YP_001560291.1 PFAM: TM2 domain containing protein?; KEGG: ddi:DDBDRAFT_0204471 hypothetical protein YP_001560293.1 PFAM: aminoglycoside phosphotransferase; KEGG: syn:sll1119 hypothetical protein YP_001560294.1 KEGG: ckl:CKL_4052 hypothetical protein YP_001560295.1 PFAM: glycoside hydrolase family 5; cellulose-binding family II; KEGG: bha:BH0603 endo-beta-1,4-glucanase (celulase B) YP_001560296.1 KEGG: ehi:82.t00025 viral A-type inclusion protein repeat, Pfam: Nha1_C DUF148 ERM Prefoldin_2 WXG100 Vicilin_N TBPIP Myosin_tail_1 Filament YscO Bacillus_HBL EzrA DUF948 Rab5-bind Laminin_I MpPF2 Vps51 MSG Spectrin LMP PROSITE: GLU_RICH LYS_RICH YP_001560297.1 PFAM: GCN5-related N-acetyltransferase; KEGG: lca:LSEI_2784 predicted acetyltransferase YP_001560298.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: tte:TTE1617 glycerol 3-phosphate dehydrogenase YP_001560299.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: csc:Csac_2452 methyl-accepting chemotaxis sensory transducer YP_001560300.1 PFAM: glycoside hydrolase family 8; KEGG: bha:BH2105 xylanase Y YP_001560301.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2113 ABC transporter (permease) YP_001560302.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2112 transmembrane lipoprotein YP_001560303.1 KEGG: bha:BH2111 multiple sugar transport system substrate-binding protein YP_001560304.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bha:BH2109 hypothetical protein YP_001560305.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: bha:BH2110 hypothetical protein YP_001560307.1 KEGG: cbh:CLC_2720 transposase YP_001560308.1 KEGG: cbe:Cbei_0719 integrase, catalytic region YP_001560309.1 PFAM: transposase IS3/IS911 family protein; KEGG: lga:LGAS_1507 transposase YP_001560310.1 PFAM: glycoside hydrolase family 28; KEGG: fjo:Fjoh_3114 glycoside hydrolase, family 28 YP_001560311.1 PFAM: Protein of unknown function DUF895, eukaryotic; major facilitator superfamily MFS_1; KEGG: ckl:CKL_0592 predicted transporter protein YP_001560312.1 PFAM: transcription activator effector binding; KEGG: cac:CAC0426 transcriptional regulator (HTH_ARAC-domain) YP_001560313.1 KEGG: cdf:CD1883 AraC-family transcriptional regulator YP_001560314.1 PFAM: Domain of unknown function DUF1801; KEGG: lbl:LBL_1943 hypothetical protein YP_001560315.1 PFAM: ribonucleotide reductase; KEGG: cno:NT01CX_2365 ribonucleoside-diphosphate reductase, beta subunit YP_001560316.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001560319.1 PFAM: nitroreductase; KEGG: mma:MM_1584 NADPH-flavin oxidoreductase YP_001560320.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cbf:CLI_0887 glyoxalase family protein YP_001560321.1 PFAM: Abortive infection protein; KEGG: tde:TDE1871 hypothetical protein YP_001560322.1 KEGG: cpe:CPE0748 hypothetical protein YP_001560323.1 KEGG: ctc:CTC00494 internalin A-like protein/ S-layer protein YP_001560324.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbh:CLC_1455 acetyltransferase, GNAT family YP_001560325.1 KEGG: amt:Amet_3811 hypothetical protein YP_001560326.1 PFAM: GCN5-related N-acetyltransferase; KEGG: btk:BT9727_2822 zwittermicin A-resistance protein YP_001560327.1 PFAM: Creatininase; KEGG: syn:sll0596 hypothetical protein YP_001560328.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: btk:BT9727_2277 hypothetical protein YP_001560329.1 KEGG: hne:HNE_2897 hypothetical protein YP_001560330.1 KEGG: btk:BT9727_4626 hypothetical protein YP_001560332.1 PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: cpf:CPF_1103 glycosyl hydrolase, family 20 YP_001560333.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3316 extracellular solute-binding protein, family 1 YP_001560334.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0557 sugar ABC transporter permease YP_001560335.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, multiple sugar transport system permease YP_001560336.1 KEGG: tte:TTE2589 hypothetical protein YP_001560337.1 KEGG: tte:TTE2593 hypothetical protein YP_001560338.1 KEGG: tte:TTE2592 hypothetical protein YP_001560339.1 PFAM: ROK family protein; KEGG: tte:TTE1926 transcriptional regulator YP_001560340.1 KEGG: sth:STH2880 hypothetical protein YP_001560342.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_2241 cupin 2, conserved barrel domain protein YP_001560343.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mac:MA1158 acetyltransferase (GNAT) family protein YP_001560348.1 PFAM: nitroreductase; KEGG: mth:MTH933 hypothetical protein YP_001560349.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: lmo:lmo0109 hypothetical protein YP_001560350.1 PFAM: protein of unknown function UPF0118; KEGG: cpr:CPR_0707 probable permease YP_001560351.1 PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: cth:Cthe_0645 homocysteine S-methyltransferase YP_001560352.1 PFAM: metallophosphoesterase; KEGG: bce:BC2070 serine/threonine protein phosphatase YP_001560353.1 KEGG: cbe:Cbei_1494 hypothetical protein YP_001560354.1 KEGG: cac:CAC2564 hypothetical protein YP_001560355.1 PFAM: Collagen triple helix repeat; KEGG: bat:BAS1130 hypothetical protein YP_001560356.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pdi:BDI_3848 phosphatase, HAD family YP_001560357.1 PFAM: Ig domain protein group 2 domain protein; KEGG: cac:CAC3086 protein containing cell adhesion domain YP_001560359.1 PFAM: inner-membrane translocator; KEGG: dsy:DSY1168 hypothetical protein YP_001560360.1 PFAM: inner-membrane translocator; KEGG: dsy:DSY1169 hypothetical protein YP_001560361.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1170 hypothetical protein YP_001560362.1 PFAM: basic membrane lipoprotein; KEGG: dsy:DSY1171 hypothetical protein YP_001560364.1 KEGG: pcu:pc1997 UDP-N-acetylglucosamine diphosphorylase YP_001560365.1 KEGG: amt:Amet_1141 DNA topoisomerase, type IA, central domain protein; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein YP_001560366.1 PFAM: protein of unknown function DUF1121; KEGG: csc:Csac_1051 protein of unknown function DUF1121 YP_001560367.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001560368.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cpf:CPF_0030 DegV family protein YP_001560369.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_2056 MATE efflux family protein YP_001560370.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0765 Periplasmic sugar-binding proteins YP_001560371.1 PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0163 ribose ABC transporter, permease YP_001560372.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component YP_001560373.1 KEGG: cpr:CPR_1601 ribose transport ATP-binding protein RbsA YP_001560374.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: csc:Csac_2533 integral membrane sensor signal transduction histidine kinase YP_001560375.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_0124 response regulator receiver protein YP_001560376.1 KEGG: cth:Cthe_0760 hypothetical protein YP_001560377.1 TIGRFAM: integral membrane protein TIGR01906; PFAM: Integral membrane protein 1906; KEGG: cbf:CLI_3471 integral membrane protein TIGR01906 YP_001560379.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein YP_001560380.1 KEGG: csc:Csac_1713 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_001560381.1 KEGG: csc:Csac_1712 hypothetical protein YP_001560382.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: cth:Cthe_2892 chaperonin GroEL YP_001560383.1 PFAM: chaperonin Cpn10; KEGG: cno:NT01CX_0463 chaperonin, 10 kDa YP_001560384.1 PFAM: VanZ family protein; KEGG: gtn:GTNG_0437 hypothetical protein YP_001560385.1 KEGG: cth:Cthe_2069 hypothetical protein YP_001560386.1 KEGG: cno:NT01CX_1368 hypothetical protein YP_001560387.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001560388.1 PFAM: cell wall hydrolase SleB; KEGG: bca:BCE_3795 cell wall hydrolase YP_001560389.1 KEGG: cth:Cthe_1219 hypothetical protein YP_001560390.1 KEGG: bat:BAS4429 hypothetical protein YP_001560391.1 TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: amt:Amet_1063 oligoendopeptidase, PepF/M3 family YP_001560392.1 KEGG: dsy:DSY3139 fumarate reductase flavoprotein subunit; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001560393.1 KEGG: cha:CHAB381_0623 capsule biosynthesis protein YP_001560394.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: bay:RBAM_030470 YvsG YP_001560396.1 PFAM: Phosphoglycerate mutase; KEGG: lac:LBA1065 phosphoglycerate mutase YP_001560397.1 PFAM: regulatory protein MerR; MCP methyltransferase CheR-type; NodS family protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: lga:LGAS_1137 predicted transcriptional regulator YP_001560398.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cpf:CPF_0600 dTDP-glucose 4,6-dehydratase YP_001560399.1 PFAM: protein of unknown function DUF218; KEGG: cpf:CPF_1089 hypothetical protein YP_001560402.1 PFAM: coagulation factor 5/8 type domain protein; KEGG: sma:SAV1723 mycodextranase YP_001560403.1 KEGG: aor:AO090138000086 predicted protein Pfam: Glyco_hydro_49 Glyco_hydro_28 Zn_clus Fungal_trans BCNT PROSITE: ZN2_CY6_FUNGAL_1 ZN2_CY6_FUNGAL_2 YP_001560404.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cac:CAC2614 beta-phosphoglucomutase YP_001560405.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cbe:Cbei_1439 regulatory protein, LacI YP_001560406.1 PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: ana:all4989 hypothetical protein YP_001560407.1 PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; KEGG: cac:CAC2685 trehalose/maltose hydrolase (phosphorylase) YP_001560408.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO7011 membrane transport protein. YP_001560409.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1726 ABC transporter permease YP_001560410.1 PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV1727 sugar-binding lipoprotein precursor YP_001560411.1 SMART: regulatory protein MarR; KEGG: cpr:CPR_0509 transcriptional regulator, MarR family YP_001560412.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ctc:CTC02405 Na+ driven multidrug efflux pump YP_001560413.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001560414.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cdf:CD0055 tRNA/rRNA methyltransferase YP_001560415.1 PFAM: ribonuclease III; KEGG: cth:Cthe_2061 hypothetical protein YP_001560416.1 TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; KEGG: cdf:CD0052 cysteinyl-tRNA synthetase YP_001560417.1 TIGRFAM: serine O-acetyltransferase; KEGG: csc:Csac_0707 serine O-acetyltransferase YP_001560418.1 KEGG: cpf:CPF_2616 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase YP_001560419.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: tte:TTE0288 CheY-like receiver domains YP_001560421.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: bha:BH1908 glucan 1,4-beta-glucosidase YP_001560422.1 KEGG: cdf:CD3324 hypothetical protein YP_001560423.1 PFAM: protein of unknown function DUF214; KEGG: csc:Csac_0506 protein of unknown function DUF214 YP_001560424.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_0507 ABC transporter related YP_001560425.1 PFAM: ATP-binding region ATPase domain protein; KEGG: csc:Csac_0508 integral membrane sensor signal transduction histidine kinase YP_001560426.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: csc:Csac_0509 two component transcriptional regulator, winged helix family YP_001560427.1 PFAM: aminoglycoside phosphotransferase; KEGG: cac:CAC2572 possible aminoglycoside phosphotransferase (protein kinase related), diverged YP_001560428.1 KEGG: aeh:Mlg_2687 regulator of chromosome condensation, RCC1 YP_001560429.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cbe:Cbei_1736 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001560430.1 PFAM: Phosphoglycerate mutase; KEGG: cme:CMA037C hypothetical protein Pfam: PGAM YP_001560431.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cdf:CD1666 glycerophosphoryl diester phosphodiesterase YP_001560432.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: vpa:VPA0110 phosphatase YP_001560433.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: lin:lin0464 hypothetical protein YP_001560434.1 PFAM: peptidase S51 dipeptidase E; KEGG: abu:Abu_0883 peptidase, S51 family YP_001560435.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: ctc:CTC02002 DegV protein YP_001560436.1 PFAM: DegV family protein; KEGG: cno:NT01CX_0895 DegV family protein YP_001560437.1 PFAM: phosphofructokinase; KEGG: cth:Cthe_0347 phosphofructokinase YP_001560438.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: dsy:DSY2917 hypothetical protein YP_001560439.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: cth:Cthe_2714 acetolactate synthase, large subunit, biosynthetic type YP_001560440.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001560441.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_001560442.1 KEGG: cac:CAC1655 bifunctional enzyme phosphoribosylformylglycinamidine (FGAM) synthase (synthetase domain/glutamine amidotransferase domain); TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein YP_001560443.1 PFAM: glycosyl transferase family 4; KEGG: tde:TDE2249 phospho-N-acetylmuramoyl-pentapeptide-transferase YP_001560444.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cth:Cthe_0553 transcriptional regulator, LysR family YP_001560445.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: cbe:Cbei_4345 succinylglutamate desuccinylase/aspartoacylase YP_001560446.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: cbe:Cbei_4346 succinylglutamate desuccinylase/aspartoacylase YP_001560447.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_001560448.1 KEGG: ckl:CKL_2159 LeuC; TIGRFAM: homoaconitate hydratase family protein; 3-isopropylmalate dehydratase, large subunit; 3-isopropylmalate dehydratase; PFAM: aconitate hydratase domain protein YP_001560450.1 KEGG: amt:Amet_3455 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_001560451.1 KEGG: bpu:BPUM_2481 possible glyoxalase YP_001560452.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tde:TDE1878 hydrolase, haloacid dehalogenase-like family YP_001560453.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cbe:Cbei_1959 transcriptional regulator, LysR family YP_001560454.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: oih:OB0896 A/G-specific adenine glycosylase YP_001560456.1 PFAM: transglutaminase domain protein; KEGG: cth:Cthe_1056 transglutaminase-like protein YP_001560457.1 PFAM: protein of unknown function DUF58; KEGG: cth:Cthe_1055 protein of unknown function DUF58 YP_001560458.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: tte:TTE2215 MoxR-like ATPases YP_001560459.1 Cellulase; PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: csc:Csac_1076 glycoside hydrolase, family 48 YP_001560460.1 PFAM: glycoside hydrolase family 48; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: csc:Csac_1076 glycoside hydrolase, family 48 YP_001560461.1 molecular chaperone YP_001560463.1 KEGG: bvu:BVU_3384 hypothetical protein YP_001560464.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BG13270 ABC transport system ATP-binding protein YP_001560465.1 KEGG: tva:TVAG_154640 surface antigen BspA-like Pfam: FNIP Pentapeptide_2 PROSITE: SER_RICH YP_001560466.1 PFAM: glutamine synthetase catalytic region; KEGG: cth:Cthe_0863 glutamine synthetase, catalytic region YP_001560467.1 PFAM: MscS Mechanosensitive ion channel; KEGG: cps:CPS_4603 mechanosensitive ion channel family protein YP_001560468.1 PFAM: protein of unknown function DUF624; KEGG: tte:TTE1959 hypothetical protein YP_001560469.1 KEGG: cdf:CD2491 mannose-6-phosphate isomerase; TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I YP_001560470.1 PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: sak:SAK_1047 methyltransferase domain protein YP_001560471.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1825 ABC-type multidrug/protein/lipid transport system, ATPase YP_001560472.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC2393 uncharacterized ABC transporter, ATPase component YP_001560473.1 TIGRFAM: xanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: cno:NT01CX_0402 xanthine phosphoribosyltransferase YP_001560474.1 PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dsy:DSY4683 hypothetical protein YP_001560475.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_001560479.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: cbf:CLI_0422 PAP2 family protein YP_001560480.1 PFAM: glycoside hydrolase family 16; Carbohydrate-binding CenC domain protein; Ig domain protein group 2 domain protein; KEGG: cth:Cthe_2809 glycoside hydrolase, family 16 YP_001560481.1 PFAM: Formamidopyrimidine-DNA glycolase, H2TH DNA binding; KEGG: pdi:BDI_2011 formamidopyrimidine-DNA glycosylase YP_001560482.1 PFAM: FAD linked oxidase domain protein; KEGG: tde:TDE0138 alkyldihydroxyacetonephosphate synthase YP_001560483.1 PFAM: carbohydrate kinase FGGY; KEGG: fno:Fnod_0555 carbohydrate kinase FGGY YP_001560484.1 PFAM: protein of unknown function DUF1667; KEGG: cac:CAC1324 uncharacterized predected metal-binding protein YP_001560485.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tde:TDE0135 pyridine nucleotide-disulphide oxidoreductase family protein YP_001560486.1 PFAM: FAD dependent oxidoreductase; transport-associated; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: tde:TDE0134 oxidoreductase, FAD-dependent YP_001560487.1 PFAM: regulatory protein TetR; KEGG: dsy:DSY1100 hypothetical protein YP_001560488.1 PFAM: glycoside hydrolase family 4; KEGG: csc:Csac_2748 glycoside hydrolase, family 4 YP_001560489.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: amt:Amet_0544 helix-turn-helix-domain containing protein, AraC type YP_001560490.1 PFAM: glycoside hydrolase family 43; KEGG: bha:BH3683 xylan beta-1,4-xylosidase YP_001560491.1 KEGG: sus:Acid_0267 hypothetical protein YP_001560492.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1119 multiple sugar transport system permease YP_001560493.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0386 lactose ABC transporter permease YP_001560494.1 PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC0385 lactose ABC transporter substrate-binding protein YP_001560496.1 PFAM: glycoside hydrolase family 30; KEGG: stm:STM4426 activated by transcription factor SsrB, similar to Homo sapiens lysosomal glucosyl ceramidase YP_001560497.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_2545 response regulator receiver protein YP_001560498.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: csc:Csac_2517 integral membrane sensor signal transduction histidine kinase YP_001560499.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE2347 sugar permeases YP_001560500.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2515 binding-protein-dependent transport systems inner membrane component YP_001560501.1 PFAM: extracellular solute-binding protein family 1; KEGG: tte:TTE2345 sugar-binding periplasmic proteins/domains YP_001560502.1 KEGG: oih:OB1036 hypothetical protein YP_001560503.1 KEGG: mma:MM_2848 hypothetical protein YP_001560504.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_001560505.1 TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase; KEGG: lac:LBA1687 L-asparaginase YP_001560506.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: amt:Amet_4299 glucosamine--fructose-6-phosphate aminotransferase, isomerizing YP_001560507.1 KEGG: tva:TVAG_216880 PH domain containing protein Pfam: PH TolA Extensin_2 PROSITE: ARG_RICH GLN_RICH GLU_RICH PRO_RICH PH_DOMAIN YP_001560508.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: bpu:BPUM_1772 possible phospholipase D YP_001560509.1 PFAM: Hsp33 protein; KEGG: tte:TTE1737 disulfide bond chaperones of the HSP33 family YP_001560510.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cth:Cthe_1855 methyltransferase type 11 YP_001560511.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: amt:Amet_0591 xylulokinase YP_001560512.1 PFAM: ROK family protein; KEGG: cdf:CD3066 xylose repressor YP_001560513.1 PFAM: diacylglycerol kinase catalytic region; KEGG: oih:OB0767 hypothetical protein YP_001560514.1 KEGG: cth:Cthe_1856 small acid-soluble spore protein beta YP_001560515.1 TIGRFAM: recombination helicase AddA; PFAM: UvrD/REP helicase; KEGG: cpf:CPF_0025 ATP-dependent nuclease, subunit A YP_001560516.1 TIGRFAM: ATP-dependent nuclease subunit B; KEGG: cno:NT01CX_1235 ATP-dependent deoxyribonuclease subunit B YP_001560518.1 TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; KEGG: cbe:Cbei_1044 NAD+ synthetase YP_001560519.1 PFAM: Radical SAM domain protein; KEGG: cno:NT01CX_1001 uncharacterized Fe-S protein YP_001560520.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dsy:DSY1197 hypothetical protein YP_001560521.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dsy:DSY1198 hypothetical protein YP_001560522.1 PFAM: Ig domain protein group 2 domain protein; KEGG: cac:CAC2107 contains cell adhesion domain YP_001560523.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: cdf:CD2543 polysaccharide O-acetylase YP_001560524.1 KEGG: cdf:CD2542 hypothetical protein YP_001560525.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein YP_001560526.1 PFAM: metallophosphoesterase; KEGG: sak:SAK_1901 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic precursor protein YP_001560527.1 KEGG: cdf:CD2800 hypothetical protein YP_001560528.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cth:Cthe_2747 PHP-like protein YP_001560529.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: cdf:CD2801 protein translocase subunit YP_001560530.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_001560531.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; SEC-C motif domain protein; KEGG: dsy:DSY2339 hypothetical protein YP_001560532.1 TIGRFAM: V-type ATPase, D subunit; PFAM: H+transporting two-sector ATPase D subunit; KEGG: ctc:CTC02326 V-type sodium ATP synthase subunit D YP_001560533.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex YP_001560534.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex YP_001560536.1 PFAM: Vacuolar H+transporting two-sector ATPase F subunit; KEGG: mth:MTH956 ATP synthase, subunit F YP_001560537.1 PFAM: H+transporting two-sector ATPase C subunit; KEGG: ctc:CTC02330 V-type sodium ATP synthase subunit K YP_001560538.1 PFAM: V-type ATPase 116 kDa subunit; KEGG: ctc:CTC02331 V-type sodium ATP synthase subunit I YP_001560539.1 PFAM: H+transporting two-sector ATPase C (AC39) subunit; KEGG: ctc:CTC02332 V-type sodium ATP synthase subunit C YP_001560541.1 catalyzes the formation of asparagine from aspartate and ammonia YP_001560542.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: amt:Amet_1575 methyl-accepting chemotaxis sensory transducer YP_001560543.1 PFAM: integrase family protein; KEGG: cth:Cthe_2286 phage integrase YP_001560544.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbf:CLI_2170 MATE efflux family protein YP_001560545.1 PFAM: FAD dependent oxidoreductase; KEGG: cbe:Cbei_1910 FAD dependent oxidoreductase YP_001560546.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC1600 methyl-accepting chemotaxis-like protein (chemotaxis sensory transducer) YP_001560547.1 PFAM: Pyrrolo-quinoline quinone; KEGG: cth:Cthe_0739 hypothetical protein YP_001560549.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001560551.1 PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1789 ATPase AAA-2 YP_001560552.1 PFAM: ATP:guanido phosphotransferase; KEGG: cth:Cthe_1790 ATP:guanido phosphotransferase YP_001560553.1 PFAM: UvrB/UvrC protein; KEGG: csc:Csac_2369 UvrB/UvrC protein YP_001560554.1 PFAM: regulatory protein GntR HTH; KEGG: swo:Swol_1390 transcriptional regulator, GntR family YP_001560555.1 KEGG: sth:STH2197 S-layer associated protein YP_001560556.1 PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: cpf:CPF_1439 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain protein, possible enterotoxin YP_001560557.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_001560558.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: cth:Cthe_1247 phosphoribosylglycinamide formyltransferase YP_001560559.1 KEGG: btl:BALH_0290 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_001560560.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: drm:Dred_2967 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001560561.1 KEGG: tpt:Tpet_0474 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_001560562.1 KEGG: tme:Tmel_0149 peptidase M29, aminopeptidase II YP_001560564.1 PFAM: VanZ family protein; KEGG: cac:CAC0829 uncharacterized conserved membrane protein, similar to MDR (VANZ) ORF of Enterococcus YP_001560565.1 PFAM: Ig domain protein group 2 domain protein; KEGG: dsy:DSY0726 hypothetical protein YP_001560566.1 KEGG: cth:Cthe_0215 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit YP_001560567.1 TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: cbe:Cbei_1573 phenylalanyl-tRNA synthetase, alpha subunit YP_001560568.1 PFAM: ribonuclease BN; KEGG: cpr:CPR_0272 YihY family protein YP_001560569.1 TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: fnu:FN0806 SpoIID homolog YP_001560570.1 KEGG: mta:Moth_1919 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_001560571.1 PFAM: dihydrodipicolinate reductase; KEGG: cth:Cthe_0963 dihydrodipicolinate reductase YP_001560572.1 KEGG: tte:TTE0832 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_001560573.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_001560574.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: cth:Cthe_1007 GTP-binding protein TypA YP_001560575.1 TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ctc:CTC00423 peptidase T YP_001560576.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: cth:Cthe_3110 UBA/ThiF-type NAD/FAD binding fold YP_001560577.1 KEGG: cpr:CPR_0353 prophage ps3 protein 01 YP_001560578.1 TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118; KEGG: cth:Cthe_1013 protein of unknown function UPF0118 YP_001560579.1 PFAM: ABC-3 protein; KEGG: fnu:FN1810 manganese transport system membrane protein mntB YP_001560580.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_0077 zinc ABC transporter, ATP-binding protein YP_001560581.1 PFAM: periplasmic solute binding protein; KEGG: cth:Cthe_0547 periplasmic solute binding protein YP_001560582.1 PFAM: protein of unknown function DUF368; KEGG: oih:OB0592 hypothetical protein YP_001560583.1 PFAM: acyltransferase 3; KEGG: sgl:SG0764 hypothetical protein YP_001560584.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: lsl:LSL_0995 UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase YP_001560585.1 KEGG: dsy:DSY3328 hypothetical protein YP_001560586.1 PFAM: O-antigen polymerase; KEGG: fjo:Fjoh_2813 O-antigen polymerase YP_001560587.1 PFAM: polysaccharide biosynthesis protein; KEGG: bth:BT_0390 O-antigen export protein YP_001560588.1 KEGG: ana:all4429 similar to hemolytic protein HlpA YP_001560589.1 PFAM: glycosyl transferase group 1; KEGG: eba:ebA5884 hypothetical protein YP_001560590.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: fps:FP1285 FnlC protein involved in UDP-L-FucpNAc biosynthesis (a nucleotide sugar precursor for antigen-O biosynthesis) probable UDP-2-acetamino-2,6-dideoxy-L-talose 2-epimerase YP_001560591.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: drm:Dred_3032 NAD-dependent epimerase/dehydratase YP_001560592.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: drm:Dred_3033 polysaccharide biosynthesis protein CapD YP_001560593.1 PFAM: glycosyl transferase group 1; KEGG: pdi:BDI_0575 glycosyltransferase family 4 YP_001560594.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: bha:BH3715 UDP-glucose 4-epimerase (galactowaldenases) YP_001560595.1 PFAM: sugar transferase; KEGG: amt:Amet_0201 sugar transferase YP_001560596.1 PFAM: integrase family protein; KEGG: mta:Moth_1796 phage integrase YP_001560597.1 PFAM: Ig domain protein group 2 domain protein; KEGG: bcy:Bcer98_0714 Ig domain protein group 2 domain protein YP_001560598.1 PFAM: Ig domain protein group 2 domain protein; KEGG: bat:BAS0841 S-layer protein SAP YP_001560599.1 KEGG: cac:CAC0999 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_001560600.1 PFAM: cell wall hydrolase SleB; KEGG: cno:NT01CX_1494 LysM-repeat proteins and domains YP_001560602.1 KEGG: pth:PTH_0772 hypothetical membrane protein YP_001560603.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_1723 ABC transporter ATP-binding protein YP_001560604.1 KEGG: csc:Csac_0698 hypothetical protein YP_001560605.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: btk:BT9727_4582 sensor histidine kinase YP_001560606.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbf:CLI_0437 DNA-binding response regulator YP_001560607.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: cth:Cthe_0332 phosphoribulokinase/uridine kinase YP_001560608.1 PFAM: protein of unknown function DUF633; KEGG: cac:CAC1302 predicted SAM-dependent methyltransferase YP_001560609.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: Bacterio-opsin activator HTH domain protein; sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: cth:Cthe_0895 RNA polymerase, sigma 38 subunit, RpoS YP_001560610.1 KEGG: cth:Cthe_0896 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein YP_001560611.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_001560612.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: btl:BALH_4382 ferrous iron transport protein B YP_001560613.1 PFAM: FeoA family protein YP_001560614.1 KEGG: cbe:Cbei_3296 hypothetical protein YP_001560615.1 KEGG: cbe:Cbei_3297 hypothetical protein YP_001560616.1 PFAM: response regulator receiver; KEGG: cth:Cthe_0805 response regulator receiver protein YP_001560617.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_001560618.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001560619.1 KEGG: cbe:Cbei_4066 hypothetical protein YP_001560620.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pth:PTH_0073 ABC-type branched-chain amino acid transport systems, ATPase component YP_001560621.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_0446 ATP binding protein of ABC transporter for branched-chain amino acids YP_001560622.1 PFAM: inner-membrane translocator; KEGG: drm:Dred_2238 inner-membrane translocator YP_001560623.1 PFAM: inner-membrane translocator; KEGG: dsy:DSY5025 hypothetical protein YP_001560624.1 PFAM: Extracellular ligand-binding receptor; KEGG: fnu:FN1432 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein YP_001560626.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpe:CPE2561 probable Ser-type protease YP_001560627.1 KEGG: cac:CAC2045 secreted protein containing domain of murein hydrolase (MltA homolog) YP_001560628.1 binds and unfolds substrates as part of the ClpXP protease YP_001560629.1 KEGG: cbe:Cbei_4697 Zn-finger containing protein YP_001560630.1 KEGG: dsy:DSY3322 hypothetical protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase YP_001560631.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: chy:CHY_0655 serine protease Do YP_001560632.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: cpe:CPE0482 probable glycero-phosphotransferase YP_001560633.1 KEGG: lca:LSEI_1134 glycosyltransferase YP_001560634.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msi:Msm_1326 polysaccharide/polyol phosphate ABC transporter, ATPase component YP_001560635.1 PFAM: ABC-2 type transporter; KEGG: mst:Msp_0204 predicted ABC-type polysaccharide/polyol phosphate export system, permease YP_001560636.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: cac:CAC0273 2-isopropylmalate synthase YP_001560637.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: ajs:Ajs_0296 phosphotransferase system, phosphocarrier protein HPr YP_001560638.1 KEGG: tte:TTE2207 hypothetical protein YP_001560639.1 PFAM: protein of unknown function DUF147; KEGG: csc:Csac_1183 protein of unknown function DUF147 YP_001560642.1 KEGG: gka:GKP06 hypothetical protein YP_001560643.1 PFAM: beta-lactamase domain protein; KEGG: ctc:CTC00821 ComE-like protein, metallo beta-lactamase superfamily hydrolase YP_001560644.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: csc:Csac_0828 lysyl-tRNA synthetase YP_001560645.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001560646.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cno:NT01CX_1854 pyruvate:ferredoxin (flavodoxin) oxidoreductase YP_001560649.1 KEGG: bha:BH3360 hypothetical protein YP_001560650.1 PFAM: transcriptional regulator PadR family protein; KEGG: amt:Amet_1565 transcriptional regulator, PadR-like family YP_001560651.1 KEGG: bth:BT_0449 conserved hypothetical protein, S-layer related protein precursor YP_001560652.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: tte:TTE2419 transcriptional regulator YP_001560653.1 PFAM: N-acetylmannosamine-6-phosphate epimerase; KEGG: fnu:FN1476 N-acetylmannosamine-6-phosphate 2-epimerase YP_001560654.1 KEGG: tte:TTE2409 hypothetical protein YP_001560655.1 KEGG: sco:SCO0628 secreted protein YP_001560656.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0557 sugar ABC transporter permease YP_001560657.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gtn:GTNG_1772 hypothetical protein YP_001560658.1 KEGG: bcl:ABC1144 sugar ABC transporter substrate-binding protein YP_001560659.1 PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: spd:SPD_1969 glycosyl hydrolase-related protein YP_001560660.1 KEGG: bth:BT_3593 hypothetical protein YP_001560661.1 PFAM: ROK family protein; KEGG: fnu:FN1474 N-acetylmannosamine kinase YP_001560662.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mba:Mbar_A3165 Fe-S oxidoreductase YP_001560664.1 KEGG: lin:lin2245 similar to ABC transporter (membrane protein) YP_001560665.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lmf:LMOf2365_2171 ABC transporter, ATP-binding protein YP_001560666.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: bay:RBAM_037310 hypothetical protein YP_001560667.1 KEGG: abu:Abu_1032 peptidase, M50 family YP_001560668.1 PFAM: protein of unknown function DUF181; KEGG: abu:Abu_1484 conserved hypothetical protein YP_001560669.1 KEGG: smr:Smar_1521 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_001560670.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: cdf:CD1011 glucosamine-6-phosphate deaminase YP_001560671.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ctc:CTC02458 cobalt-zinc-cadmium resistance protein CzcD YP_001560672.1 PFAM: NADPH-dependent FMN reductase; KEGG: mbn:Mboo_0948 NADPH-dependent FMN reductase YP_001560673.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: oih:OB2557 transcriptional regulator YP_001560674.1 PFAM: Ricin B lectin; glycosyl hydrolase 53 domain protein; KEGG: eca:ECA0852 exported plant proteoglycan hydrolase YP_001560676.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2724 lactose transport system permease YP_001560677.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2725 lactose transport system permease YP_001560678.1 PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA0848 sugar ABC transporter, periplasmic binding protein YP_001560679.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: tte:TTE0448 methyl-accepting chemotaxis protein YP_001560681.1 KEGG: mgr:MGG_11654 predicted protein YP_001560682.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ckl:CKL_1000 RpoE YP_001560683.1 KEGG: cpf:CPF_1765 hypothetical protein YP_001560684.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; KEGG: cpr:CPR_0581 peptide chain release factor 3 YP_001560685.1 PFAM: ABC-2 type transporter; KEGG: lpl:lp_1334 ABC transporter, permease YP_001560686.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB0247 ABC transporter ATP-binding protein YP_001560687.1 PFAM: LytTr DNA-binding region; KEGG: bcy:Bcer98_3804 LytTr DNA-binding region YP_001560688.1 KEGG: csc:Csac_0991 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein YP_001560689.1 PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: csc:Csac_0993 homoserine dehydrogenase YP_001560690.1 PFAM: amino acid-binding ACT domain protein; KEGG: amt:Amet_0565 amino acid-binding ACT YP_001560691.1 PFAM: protein of unknown function DUF1232; KEGG: cbe:Cbei_2722 protein of unknown function DUF1232 YP_001560692.1 KEGG: cth:Cthe_1857 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001560693.1 PFAM: peptidase M23B; KEGG: tte:TTE1975 membrane proteins related to metalloendopeptidase YP_001560694.1 PFAM: protein of unknown function DUF214; KEGG: ctc:CTC02509 cell division protein ftsX YP_001560695.1 KEGG: cth:Cthe_1860 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase YP_001560696.1 KEGG: cth:Cthe_1861 transcriptional regulator, CdaR YP_001560697.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein YP_001560698.1 PFAM: protein of unknown function DUF161; KEGG: cth:Cthe_2703 protein of unknown function DUF161 YP_001560699.1 KEGG: pth:PTH_2777 hypothetical membrane protein YP_001560700.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ckl:CKL_0780 predicted short-chain dehydrogenase YP_001560701.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tde:TDE0450 hypothetical protein YP_001560702.1 PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY1968 hypothetical protein YP_001560703.1 KEGG: btl:BALH_2620 aminoglycoside N3'-acetyltransferase YP_001560704.1 PFAM: glycoside hydrolase family 43; KEGG: bad:BAD_0301 pyridine nucleotide-disulphide oxidoreductase YP_001560705.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: llc:LACR_1474 3-oxoacyl-acyl carrier protein reductase YP_001560706.1 PFAM: sodium/hydrogen exchanger; KEGG: cbh:CLC_1237 transporter, monovalent cation:proton antiporter-2 (CPA2) family YP_001560707.1 PFAM: regulatory protein TetR; KEGG: cbh:CLC_1236 transcriptional regulator, TetR family YP_001560708.1 PFAM: Amidohydrolase 3; KEGG: btk:BT9727_4230 N-acyl-D-amino-acid deacylase family protein YP_001560709.1 PFAM: regulatory protein MerR; KEGG: cbo:CBO0895 transcriptional regulator YP_001560711.1 KEGG: blo:BL0186 possible esterase YP_001560712.1 KEGG: mlo:mll3789 weak similarity to chloramphenicol phosphotransferase YP_001560713.1 forms a direct contact with the tRNA during translation YP_001560714.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001560715.1 KEGG: cbe:Cbei_3786 integral membrane sensor signal transduction histidine kinase YP_001560716.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: cbe:Cbei_3785 two component transcriptional regulator, LuxR family YP_001560718.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_4728 ABC transporter related YP_001560719.1 PFAM: protein of unknown function DUF214; KEGG: vfi:VFA0736 ABC transporter permease YP_001560720.1 KEGG: cth:Cthe_2939 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_001560721.1 PFAM: cobalt transport protein; KEGG: cdf:CD0102 ABC transporter, permease YP_001560722.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4446 ABC transporter related YP_001560723.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_2683 cobalt ABC transporter, ATP-binding protein YP_001560724.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001560725.1 KEGG: cth:Cthe_2932 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase alpha subunit domain protein; RNA polymerase dimerisation; RNA polymerase insert; SMART: RNA polymerase RpoA/D/Rpb3-type YP_001560726.1 PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: drm:Dred_0242 RNA-binding S4 domain protein YP_001560727.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001560728.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001560729.1 PFAM: ribosomal protein L36; KEGG: csc:Csac_2263 ribosomal protein L36 YP_001560730.1 TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1 IF1 family protein; KEGG: cth:Cthe_2927 translation initiation factor IF-1 YP_001560731.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: tte:TTE2270 methionine aminopeptidase YP_001560732.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001560733.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: amt:Amet_4458 preprotein translocase, SecY subunit YP_001560734.1 late assembly protein YP_001560735.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001560736.1 TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG: cth:Cthe_2920 ribosomal protein S5-like protein YP_001560737.1 binds 5S rRNA along with protein L5 and L25 YP_001560738.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001560739.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001560740.1 PFAM: ribosomal protein S14; KEGG: amt:Amet_4465 ribosomal protein S14 YP_001560741.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_001560742.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001560743.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001560744.1 PFAM: ribosomal protein S17; KEGG: cth:Cthe_2912 ribosomal protein S17 YP_001560745.1 one of the stabilizing components for the large ribosomal subunit YP_001560746.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001560747.1 KEGG: gka:GK0112 30S ribosomal protein S3 (BS2); TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein YP_001560748.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001560749.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001560750.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001560751.1 PFAM: Ribosomal protein L25/L23; KEGG: cdf:CD0075 50S ribosomal protein L23 YP_001560752.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001560753.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001560754.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001560755.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: csc:Csac_2452 methyl-accepting chemotaxis sensory transducer YP_001560756.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: msu:MS0567 hypothetical protein YP_001560757.1 KEGG: cdf:CD3581 hypothetical protein YP_001560758.1 PFAM: PspA/IM30 family protein; KEGG: dsy:DSY1913 hypothetical protein YP_001560759.1 KEGG: dsy:DSY1914 hypothetical protein YP_001560760.1 KEGG: dsy:DSY1915 hypothetical protein YP_001560761.1 KEGG: bay:RBAM_006610 YdjI YP_001560762.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pap:PSPA7_3441 hypothetical protein YP_001560763.1 PFAM: BioY protein; KEGG: cbe:Cbei_1913 BioY protein YP_001560764.1 KEGG: cac:CAC2331 DTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_001560765.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: drm:Dred_3036 dTDP-4-dehydrorhamnose reductase YP_001560766.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cbe:Cbei_4754 dTDP-glucose 4,6-dehydratase YP_001560767.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cbe:Cbei_4756 glucose-1-phosphate thymidylyltransferase YP_001560768.1 KEGG: amt:Amet_0211 hypothetical protein YP_001560769.1 KEGG: cbe:Cbei_1903 fructose-1,6-bisphosphate aldolase, class II; TIGRFAM: ketose-bisphosphate aldolase; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II YP_001560771.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: sth:STH2919 phosphatase YP_001560772.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001560773.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 3; KEGG: cth:Cthe_2724 DNA-directed RNA polymerase, beta subunit YP_001560774.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cth:Cthe_2666 ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_001560775.1 PFAM: major facilitator superfamily MFS_1; KEGG: amt:Amet_3781 major facilitator superfamily MFS_1 YP_001560776.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001560777.1 PFAM: ribosomal protein L10; KEGG: cbe:Cbei_0142 ribosomal protein L10 YP_001560778.1 PFAM: ribosomal protein L1; KEGG: cth:Cthe_2721 ribosomal protein L1 YP_001560779.1 PFAM: ribosomal protein L11; KEGG: cdf:CD0061 50S ribosomal protein L11 YP_001560780.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KEGG: cth:Cthe_2719 NusG antitermination factor YP_001560781.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein YP_001560782.1 PFAM: ribosomal protein L33; KEGG: amt:Amet_4493 ribosomal protein L33 YP_001560783.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: amt:Amet_2816 response regulator receiver protein YP_001560784.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Ig domain protein group 2 domain protein; KEGG: cpv:cgd6_4840 serine protease, subtilase family, signal peptide YP_001560785.1 TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: cth:Cthe_2452 oligoendopeptidase F YP_001560786.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bha:BH1928 transcriptional regulator (LacI family) YP_001560787.1 PFAM: Heptaprenyl diphosphate synthase component I; KEGG: cno:NT01CX_0720 hypothetical protein YP_001560788.1 PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_3172 protein of unknown function DUF214 YP_001560789.1 KEGG: yli:YALI0B09867g hypothetical protein YP_001560790.1 KEGG: cth:Cthe_3171 S-layer domain-like protein YP_001560791.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_0366 ABC transporter related YP_001560792.1 KEGG: pdi:BDI_1616 hypothetical protein YP_001560793.1 PFAM: transglutaminase domain protein; KEGG: cth:Cthe_1056 transglutaminase-like protein YP_001560794.1 PFAM: protein of unknown function DUF58; KEGG: cth:Cthe_1055 protein of unknown function DUF58 YP_001560795.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: pho:PH0776 methanol dehydrogenase regulatory protein YP_001560796.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dsy:DSY1521 hypothetical protein YP_001560799.1 PFAM: regulatory protein MerR; KEGG: dsy:DSY0175 hypothetical protein YP_001560800.1 KEGG: sun:SUN_2457 hypothetical protein YP_001560801.1 KEGG: ckl:CKL_2980 hypothetical protein YP_001560802.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: bcl:ABC1433 two-component response regulator YP_001560804.1 PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: tme:Tmel_1315 D-tyrosyl-tRNA(Tyr) deacylase YP_001560805.1 KEGG: tte:TTE0463 Phosphopentomutase; TIGRFAM: phosphopentomutase; PFAM: metalloenzyme domain protein; Phosphopentomutase domain protein YP_001560806.1 KEGG: ckl:CKL_2512 predicted phosphatase YP_001560807.1 PFAM: glycosyl transferase family 2; KEGG: cac:CAC1488 glycosyltransferase involved in cell wall biogenesis YP_001560809.1 KEGG: cpe:CPE1049 hypothetical protein YP_001560811.1 PFAM: ATP-binding region ATPase domain protein; KEGG: mta:Moth_1138 histidine kinase YP_001560812.1 PFAM: histidine triad (HIT) protein; KEGG: bha:BH1189 Hit-like protein involved in cell-cycle regulation YP_001560813.1 KEGG: ctc:CTC01743 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain YP_001560814.1 KEGG: bvu:BVU_3470 hypothetical protein YP_001560815.1 PFAM: purine or other phosphorylase family 1; KEGG: cdf:CD2611 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_001560816.1 PFAM: 3H domain protein; Helix-turn-helix type 11 domain protein; KEGG: tte:TTE0520 hypothetical protein YP_001560817.1 KEGG: amt:Amet_0021 phosphotransferase system, EIIC YP_001560818.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: ctc:CTC01815 phosphoesterase YP_001560819.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: mla:Mlab_1047 hypothetical protein YP_001560820.1 KEGG: tte:TTE0157 hypothetical protein YP_001560821.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: bha:BH3753 ATP synthase epsilon subunit YP_001560822.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001560823.1 KEGG: amt:Amet_0352 ATP synthase F1, gamma subunit; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit YP_001560824.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001560825.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: pth:PTH_2815 F0F1-type ATP synthase, delta subunit YP_001560826.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: cdf:CD3472 ATP synthase B chain YP_001560827.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_001560828.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: amt:Amet_0346 ATP synthase F0, A subunit YP_001560829.1 KEGG: amt:Amet_0345 hypothetical protein YP_001560830.1 KEGG: sat:SYN_00586 hypothetical membrane protein YP_001560831.1 KEGG: cpr:CPR_2173 ribose 5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase YP_001560832.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sha:SH0920 low molecular weight protein-tyrosine-phosphatase YP_001560833.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: cbf:CLI_0197 SUA5/YciO/YrdC/YwlC family protein YP_001560834.1 PFAM: cell wall hydrolase/autolysin; KEGG: cdf:CD0106 germination-specific N-acetylmuramoyl-L-alanine amidase YP_001560835.1 PFAM: glycoside hydrolase family 18; SMART: chitinase II; KEGG: cth:Cthe_2895 glycoside hydrolase, family 18 YP_001560837.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: cac:CAC0404 serine/threonine protein kinase fused to TPR repeats domain YP_001560838.1 KEGG: cth:Cthe_0085 negative regulator of genetic competence YP_001560839.1 KEGG: cth:Cthe_3092 conserved hypothetical protein, CF-27 family YP_001560840.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cno:NT01CX_0756 ferredoxin YP_001560841.1 SMART: regulatory protein MerR; KEGG: swo:Swol_0385 transcriptional regulator, MerR family YP_001560842.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: cth:Cthe_2256 replicative DNA helicase YP_001560843.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001560844.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cth:Cthe_2258 phosphoesterase, RecJ-like protein YP_001560845.1 PFAM: PT repeat-containing protein; KEGG: hwa:HQ1193A probable cell surface glycoprotein YP_001560848.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_2520 MATE efflux family protein YP_001560850.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cbe:Cbei_4660 transcriptional regulator, GntR family YP_001560852.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: tte:TTE2591 N-methylhydaintoinase A YP_001560853.1 PFAM: Citrate transporter; KEGG: ooe:OEOE_0129 H+/gluconate symporter YP_001560857.1 KEGG: pin:Ping_1307 predicted antifreeze protein type I YP_001560858.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001560859.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cth:Cthe_2186 single-strand binding protein YP_001560860.1 PFAM: ribosomal protein S6; KEGG: mta:Moth_0128 ribosomal protein S6 YP_001560861.1 PFAM: protein of unknown function DUF951; KEGG: sth:STH3322 hypothetical protein YP_001560862.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: cac:CAC0882 predicted membrane protein, hemolysin III homolog YP_001560863.1 PFAM: peptidase M23B; KEGG: amt:Amet_0360 peptidase M23B YP_001560864.1 PFAM: protein of unknown function DUF990; KEGG: tde:TDE0485 membrane protein YP_001560865.1 KEGG: tde:TDE0486 membrane protein YP_001560866.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0487 ABC transporter, ATP-binding protein YP_001560867.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: lwe:lwe0099 ABC transporter, ATP-binding/permease YP_001560868.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: lwe:lwe0098 ABC transporter, ATP-binding/permease YP_001560869.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cpe:CPE0284 probable transcriptional regulator YP_001560870.1 KEGG: cdf:CD1007 hypothetical protein YP_001560871.1 PFAM: glycoside hydrolase family 31; KEGG: cpf:CPF_2648 glycosyl hydrolase, family 31 YP_001560872.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_3119 flavin reductase-like, FMN-binding YP_001560873.1 TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: cbo:CBO0416 probable acyltransferase YP_001560875.1 PFAM: Domain of unknown function DUF1934; KEGG: tte:TTE2534 hypothetical protein YP_001560876.1 KEGG: csc:Csac_1373 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_001560877.1 KEGG: cth:Cthe_1938 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; D-alanine--D-alanine ligase domain protein YP_001560878.1 TIGRFAM: stage II sporulation protein R; PFAM: Sporulation stage II protein R; KEGG: cbh:CLC_0174 stage II sporulation protein R YP_001560879.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_001560880.1 PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_2402 peptidoglycan-binding LysM YP_001560881.1 KEGG: amt:Amet_0774 hypothetical protein YP_001560882.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: tte:TTE0889 predicted metal-dependent phosphoesterase (PHP family) YP_001560883.1 KEGG: tte:TTE0888 hypothetical protein YP_001560884.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: tte:TTE0887 ferredoxin 2 YP_001560885.1 KEGG: cth:Cthe_0334 anti-sigma regulatory factor, serine/threonine protein kinase YP_001560886.1 PFAM: DRTGG domain protein; KEGG: cth:Cthe_0333 hypothetical protein YP_001560887.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: cth:Cthe_0338 NADH-quinone oxidoreductase, E subunit YP_001560888.1 PFAM: ATP-binding region ATPase domain protein; KEGG: pdi:BDI_1092 hypothetical protein YP_001560889.1 KEGG: csc:Csac_1862 hypothetical protein YP_001560890.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: csc:Csac_1863 NADH dehydrogenase (quinone) YP_001560891.1 TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: cth:Cthe_0342 hydrogenase, Fe-only YP_001560894.1 KEGG: cdf:CD1903 lipoprotein signal peptidase YP_001560895.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bat:BAS3058 spermine/spermidine acetyltransferase YP_001560896.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tte:TTE0367 MoxR-like ATPases YP_001560897.1 PFAM: protein of unknown function DUF58; KEGG: csc:Csac_0672 protein of unknown function DUF58 YP_001560900.1 PFAM: protein of unknown function DUF1021; KEGG: cth:Cthe_2401 protein of unknown function DUF1021 YP_001560901.1 PFAM: ferric-uptake regulator; KEGG: chy:CHY_1135 transcriptional regulator, Fur family YP_001560902.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cdf:CD1474 ruberythrin YP_001560903.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bsu:BG12973 similar to hypothetical proteins YP_001560904.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cno:NT01CX_0997 ATP-dependent RNA helicase YP_001560905.1 KEGG: sfu:Sfum_0263 ATPase AAA-2 domain protein; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase YP_001560906.1 PFAM: PGAP1 family protein; KEGG: oih:OB2742 hypothetical protein YP_001560907.1 PFAM: band 7 protein; KEGG: cth:Cthe_0666 HflC protein YP_001560908.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: cth:Cthe_0665 HflK protein YP_001560909.1 KEGG: rno:679495 hypothetical protein LOC679495 YP_001560910.1 TIGRFAM: spore coat protein, CotS family; KEGG: ctc:CTC00273 spore coat protein YP_001560912.1 KEGG: cdf:CD2186 phage-related hypothetical protein YP_001560913.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: ctc:CTC01205 tRNA nucleotidyltransferase (CCA-adding enzyme) YP_001560914.1 PFAM: lipolytic protein G-D-S-L family; KEGG: ctc:CTC01503 phospholipase-subfamily protein YP_001560915.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cbe:Cbei_4096 GntR domain protein YP_001560916.1 PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: cbe:Cbei_4095 dihydroxy-acid dehydratase YP_001560917.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: gtn:GTNG_1835 low-affinity gluconate transporter YP_001560918.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_001560920.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate YP_001560921.1 PFAM: regulatory protein MarR; KEGG: dsy:DSY0928 hypothetical protein YP_001560922.1 TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; KEGG: amt:Amet_0094 nicotinate phosphoribosyltransferase YP_001560923.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001560924.1 TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118; KEGG: tte:TTE0022 predicted permease YP_001560925.1 KEGG: msi:Msm_0734 cytidylate kinase, Cmk YP_001560926.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1490 hypothetical protein YP_001560927.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1489 hypothetical protein YP_001560928.1 KEGG: cth:Cthe_1411 tryptophan synthase, alpha subunit; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain YP_001560929.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001560930.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: cac:CAC3159 phosphoribosylanthranilate isomerase YP_001560931.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_001560932.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001560933.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: cth:Cthe_0874 glutamine amidotransferase of anthranilate synthase YP_001560934.1 KEGG: msi:Msm_1146 anthranilate/para-aminobenzoate synthase component I, TrpE; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like YP_001560935.1 KEGG: lbl:LBL_1556 endoflagellar biosynthesis chaperone YP_001560936.1 PFAM: flagellin domain protein; KEGG: drm:Dred_2433 flagellin domain protein YP_001560937.1 KEGG: pfa:PF11_0507 antigen 332 YP_001560938.1 PFAM: protein of unknown function DUF885; KEGG: lbl:LBL_0029 hypothetical protein YP_001560939.1 KEGG: fno:Fnod_1444 phosphoenolpyruvate carboxykinase (ATP) YP_001560940.1 PFAM: carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: vch:VC0612 cellobiose/cellodextrin-phosphorylase YP_001560941.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: vpa:VP2488 phosphoglucomutase/phosphomannomutase YP_001560942.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein YP_001560943.1 PFAM: histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: csc:Csac_0683 histidine kinase internal region YP_001560944.1 PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_0682 extracellular solute-binding protein, family 1 YP_001560945.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0775 sugar ABC transporter permease YP_001560946.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0776 sugar ABC transporter permease YP_001560947.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bcl:ABC3646 two-component response regulator YP_001560948.1 PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; KEGG: tpt:Tpet_0863 endo-1,4-beta-xylanase YP_001560949.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1189 ABC transporter related protein YP_001560950.1 PFAM: protein of unknown function DUF990; KEGG: cth:Cthe_1188 protein of unknown function DUF990 YP_001560951.1 PFAM: protein of unknown function DUF990; KEGG: cth:Cthe_1187 protein of unknown function DUF990 YP_001560952.1 PFAM: beta-lactamase; KEGG: bay:RBAM_014410 MlnI YP_001560953.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cno:NT01CX_2117 methyl-accepting chemotaxis protein YP_001560954.1 KEGG: fnu:FN1023 5-Nitroimidazole antibiotic resistance protein YP_001560955.1 PFAM: Fibronectin type III domain protein; KEGG: bha:BH0494 exopolygalacturonate lyase YP_001560956.1 KEGG: dsy:DSY1488 hypothetical protein YP_001560957.1 KEGG: cbe:Cbei_4440 hypothetical protein YP_001560958.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC0321 response regulator (CheY-like domain, HTH domain) YP_001560959.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cac:CAC0317 sensory transduction histidine kinase YP_001560960.1 PFAM: S-adenosylmethionine synthetase; KEGG: bpu:BPUM_2686 methionine adenosyltransferase YP_001560961.1 PFAM: Heavy metal transport/detoxification protein YP_001560962.1 PFAM: protein of unknown function DUF156; KEGG: dsy:DSY2565 hypothetical protein YP_001560963.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY4510 hypothetical protein YP_001560964.1 KEGG: cth:Cthe_0898 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001560965.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: csc:Csac_1198 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001560966.1 PFAM: shikimate kinase; KEGG: mem:Memar_2255 shikimate kinase YP_001560967.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: bvu:BVU_3339 flavoredoxin YP_001560968.1 KEGG: ctc:CTC00234 cell wall hydrolase YP_001560969.1 KEGG: tva:TVAG_244940 viral A-type inclusion protein, Pfam: DUF2013 Spectrin DUF1945 EzrA Vicilin_N Myosin_tail_1 ATG16 HrpB7 Tektin DUF869 KAR9 Pox_A_type_inc Prefoldin_2 Rad50_zn_hook Hemerythrin Filament Microtub_assoc SF-assemblin Apolipoprotein MpPF2 BRE1 Phage_GP20 PROSITE: GLU_RICH YP_001560970.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC2932 ABC-type MDR transporter, ATPase component YP_001560971.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC01847 fumarate reductase flavoprotein subunit YP_001560972.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: ctc:CTC01848 two-component sensor kinase YesM YP_001560973.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: ctc:CTC01849 transcriptional regulatory protein YP_001560974.1 KEGG: cpr:CPR_0357 hypothetical protein YP_001560975.1 KEGG: cpr:CPR_0356 hypothetical protein YP_001560976.1 KEGG: bce:BC0947 hypothetical protein YP_001560977.1 PFAM: cyclic nucleotide-binding; KEGG: swo:Swol_0580 hypothetical protein YP_001560978.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cno:NT01CX_0361 cell envelope-related transcriptional attenuator YP_001560979.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bha:BH0033 Cu binding protein (Mn oxidation) YP_001560980.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: amt:Amet_1388 anaerobic ribonucleoside-triphosphate reductase activating protein YP_001560981.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bca:BCE_4217 ribosomal-protein-alanine acetyltransferase YP_001560982.1 KEGG: tva:TVAG_244940 viral A-type inclusion protein, Pfam: DUF2013 Spectrin DUF1945 EzrA Vicilin_N Myosin_tail_1 ATG16 HrpB7 Tektin DUF869 KAR9 Pox_A_type_inc Prefoldin_2 Rad50_zn_hook Hemerythrin Filament Microtub_assoc SF-assemblin Apolipoprotein MpPF2 BRE1 Phage_GP20 PROSITE: GLU_RICH YP_001560983.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD1405 ABC transporter, ATP-binding protein YP_001560984.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC3648 acetyltransferase (with duplicated domains), possibly RimI-like protein YP_001560985.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: amt:Amet_0138 dimethyladenosine transferase YP_001560986.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: cno:NT01CX_0686 hydrolase, TatD family YP_001560987.1 KEGG: cbf:CLI_1758 fructose-1-phosphate kinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein YP_001560989.1 PFAM: regulatory protein GntR HTH; KEGG: ckl:CKL_0385 transcriptional regulator YP_001560990.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_0384 predicted ABC transporter, ATPase component YP_001560991.1 KEGG: ckl:CKL_0383 predicted transporter protein YP_001560992.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: ckl:CKL_0307 Pts1 YP_001560993.1 PFAM: nucleoside recognition domain protein; KEGG: cth:Cthe_2098 nucleoside recognition YP_001560994.1 KEGG: bha:BH1574 spore maturation protein YP_001560995.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: swo:Swol_0047 transcription regulator AbrB YP_001560996.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cth:Cthe_2101 protein of unknown function UPF0011 YP_001560997.1 PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: amt:Amet_0090 methyltransferase small YP_001560998.1 PFAM: PSP1 domain protein; KEGG: ckl:CKL_3792 predicted peptidase YP_001560999.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: amt:Amet_0084 DNA polymerase III, delta prime subunit YP_001561000.1 PFAM: protein of unknown function DUF327; KEGG: cth:Cthe_2106 protein of unknown function DUF327 YP_001561001.1 SMART: guanylate kinase/L-type calcium channel region; KEGG: cpr:CPR_2447 guanylate kinase-like protein YP_001561002.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: amt:Amet_0081 Orn/Lys/Arg decarboxylase, major region YP_001561003.1 KEGG: bld:BLi03141 similar to proteins; RBL00993; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase YP_001561004.1 KEGG: mgr:MGG_04749 predicted protein YP_001561005.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: sat:SYN_00045 thioredoxin YP_001561006.1 PFAM: protein of unknown function UPF0118; KEGG: amt:Amet_4632 protein of unknown function UPF0118 YP_001561007.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: dsy:DSY4185 hypothetical protein YP_001561008.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: ckl:CKL_1659 predicted transposase YP_001561010.1 PFAM: protein of unknown function DUF159; KEGG: csc:Csac_0196 protein of unknown function DUF159 YP_001561011.1 PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase_; KEGG: cth:Cthe_0423 iron-containing alcohol dehydrogenase YP_001561012.1 PFAM: ABC transporter related; KEGG: bay:RBAM_009350 YhcH YP_001561013.1 PFAM: aminoglycoside phosphotransferase; KEGG: cth:Cthe_0424 aminoglycoside phosphotransferase YP_001561014.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source YP_001561015.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: tte:TTE0925 D-alanyl-D-alanine carboxypeptidase YP_001561018.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: cbe:Cbei_2514 metal dependent phosphohydrolase YP_001561019.1 KEGG: cbf:CLI_3882 hypothetical protein YP_001561020.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cbh:CLC_3637 stage 0 sporulation protein J YP_001561021.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: tte:TTE2791 ATPases involved in chromosome partitioning YP_001561022.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: cth:Cthe_1267 two component transcriptional regulator, LuxR family YP_001561023.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: cth:Cthe_1268 histidine kinase YP_001561024.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tpt:Tpet_1016 GCN5-related N-acetyltransferase YP_001561025.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: cth:Cthe_2363 methyltransferase GidB YP_001561026.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001561027.1 TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: ctc:CTC00098 thiophene and furan oxidation protein thdF YP_001561028.1 PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: cbh:CLC_3643 jag protein YP_001561029.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: ckl:CKL_3476 hypothetical protein YP_001561030.1 PFAM: protein of unknown function DUF37; KEGG: sth:STH3339 alpha-hemolysin YP_001561031.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_001561032.1 in Escherichia coli transcription of this gene is enhanced by polyamines