-- dump date 20140619_045011 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001557131.1 160878163 5742482 75..1436 1 NC_010001.1 KEGG: cbf:CLI_0001 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase; chromosomal replication initiator protein DnaA 1436 5742482 Cphy_0001 Clostridium phytofermentans ISDg chromosomal replication initiator protein DnaA YP_001557131.1 75 D 357809 CDS YP_001557132.1 160878164 5744062 1849..2961 1 NC_010001.1 KEGG: cth:Cthe_2372 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 2961 5744062 Cphy_0002 Clostridium phytofermentans ISDg DNA polymerase III subunit beta YP_001557132.1 1849 D 357809 CDS YP_001557133.1 160878165 5744063 3099..3314 1 NC_010001.1 PFAM: RNA-binding S4 domain protein; KEGG: art:Arth_1328 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 3314 5744063 Cphy_0003 Clostridium phytofermentans ISDg RNA-binding S4 domain-containing protein YP_001557133.1 3099 D 357809 CDS YP_001557134.1 160878166 5744064 3870..4952 1 NC_010001.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: cpr:CPR_0004 DNA replication and repair protein RecF; DNA replication and repair protein RecF 4952 5744064 Cphy_0004 Clostridium phytofermentans ISDg DNA replication and repair protein RecF YP_001557134.1 3870 D 357809 CDS YP_001557135.1 160878167 5744065 4986..6914 1 NC_010001.1 KEGG: cno:NT01CX_0862 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 6914 5744065 Cphy_0005 Clostridium phytofermentans ISDg DNA gyrase subunit B YP_001557135.1 4986 D 357809 CDS YP_001557136.1 160878168 5744066 6932..9631 1 NC_010001.1 KEGG: amt:Amet_0007 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit A 9631 5744066 Cphy_0006 Clostridium phytofermentans ISDg DNA gyrase subunit A YP_001557136.1 6932 D 357809 CDS YP_001557137.1 160878169 5741484 9911..10753 1 NC_010001.1 KEGG: cth:Cthe_3090 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 10753 5741484 Cphy_0007 Clostridium phytofermentans ISDg tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha YP_001557137.1 9911 D 357809 CDS YP_001557138.1 160878170 5741485 10807..11355 1 NC_010001.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: amt:Amet_3412 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta 11355 5741485 Cphy_0008 Clostridium phytofermentans ISDg tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta YP_001557138.1 10807 D 357809 CDS YP_001557139.1 160878171 5741486 11434..11871 1 NC_010001.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: csc:Csac_2255 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 11871 5741486 Cphy_0009 Clostridium phytofermentans ISDg BadM/Rrf2 family transcriptional regulator YP_001557139.1 11434 D 357809 CDS YP_001557140.1 160878172 5741487 12344..13630 1 NC_010001.1 KEGG: cbe:Cbei_0766 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 13630 5741487 Cphy_0010 Clostridium phytofermentans ISDg O-acetylhomoserine/O-acetylserine sulfhydrylase YP_001557140.1 12344 D 357809 CDS YP_001557141.1 160878173 5741488 13672..14604 1 NC_010001.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cbe:Cbei_4356 cysteine synthase A; cysteine synthase A 14604 5741488 Cphy_0011 Clostridium phytofermentans ISDg cysteine synthase A YP_001557141.1 13672 D 357809 CDS YP_001557142.1 160878174 5744932 22337..23074 1 NC_010001.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 23074 5744932 Cphy_0012 Clostridium phytofermentans ISDg NAD-dependent deacetylase YP_001557142.1 22337 D 357809 CDS YP_001557143.1 160878175 5744933 23329..23982 1 NC_010001.1 KEGG: cbe:Cbei_4645 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase 23982 5744933 Cphy_0013 Clostridium phytofermentans ISDg transaldolase YP_001557143.1 23329 D 357809 CDS YP_001557144.1 160878176 5744934 24186..26168 1 NC_010001.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: ctc:CTC01332 transketolase; transketolase 26168 5744934 Cphy_0014 Clostridium phytofermentans ISDg transketolase YP_001557144.1 24186 D 357809 CDS YP_001557145.1 160878177 5744935 26532..27218 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amt:Amet_1506 two component transcriptional regulator, winged helix family; two component transcriptional regulator 27218 5744935 Cphy_0015 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001557145.1 26532 D 357809 CDS YP_001557146.1 160878178 5744936 27208..28647 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: amt:Amet_1507 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 28647 5744936 Cphy_0016 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001557146.1 27208 D 357809 CDS YP_001557147.1 160878179 5744937 complement(29061..30842) 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cpe:CPE1525 probable ABC transporter; ABC transporter 30842 5744937 Cphy_0017 Clostridium phytofermentans ISDg ABC transporter YP_001557147.1 29061 R 357809 CDS YP_001557148.1 160878180 5744938 complement(30987..32732) 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_2793 ABC transporter related; ABC transporter 32732 5744938 Cphy_0018 Clostridium phytofermentans ISDg ABC transporter YP_001557148.1 30987 R 357809 CDS YP_001557149.1 160878181 5744939 33488..33748 1 NC_010001.1 hypothetical protein 33748 5744939 Cphy_0019 Clostridium phytofermentans ISDg hypothetical protein YP_001557149.1 33488 D 357809 CDS YP_001557150.1 160878182 5744940 33777..34718 1 NC_010001.1 PFAM: RelA/SpoT domain protein; KEGG: lin:lin0794 hypothetical protein; RelA/SpoT domain-containing protein 34718 5744940 Cphy_0020 Clostridium phytofermentans ISDg RelA/SpoT domain-containing protein YP_001557150.1 33777 D 357809 CDS YP_001557151.1 160878183 5744941 complement(34946..35857) 1 NC_010001.1 PFAM: RNA binding S1 domain protein; KEGG: cno:NT01CX_1373 RpsA; RNA-binding S1 domain-containing protein 35857 5744941 Cphy_0021 Clostridium phytofermentans ISDg RNA-binding S1 domain-containing protein YP_001557151.1 34946 R 357809 CDS YP_001557152.1 160878184 5744942 36006..36809 1 NC_010001.1 PFAM: NUDIX hydrolase; KEGG: cth:Cthe_3126 NUDIX hydrolase; NUDIX hydrolase 36809 5744942 Cphy_0022 Clostridium phytofermentans ISDg NUDIX hydrolase YP_001557152.1 36006 D 357809 CDS YP_001557153.1 160878185 5744943 complement(36983..37717) 1 NC_010001.1 KEGG: rci:RCIX1087 hypothetical protein; hypothetical protein 37717 5744943 Cphy_0023 Clostridium phytofermentans ISDg hypothetical protein YP_001557153.1 36983 R 357809 CDS YP_001557154.1 160878186 5744944 38095..39390 1 NC_010001.1 catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 2 39390 5744944 Cphy_0024 Clostridium phytofermentans ISDg aminopeptidase 2 YP_001557154.1 38095 D 357809 CDS YP_001557155.1 160878187 5744945 40543..42537 1 NC_010001.1 TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; tRNA synthetase class I (M); KEGG: cno:NT01CX_0697 methionyl-tRNA synthetase; methionyl-tRNA synthetase 42537 5744945 Cphy_0025 Clostridium phytofermentans ISDg methionyl-tRNA synthetase YP_001557155.1 40543 D 357809 CDS YP_001557156.1 160878188 5744946 complement(42711..42926) 1 NC_010001.1 KEGG: tte:TTE0043 hypothetical protein; hypothetical protein 42926 5744946 Cphy_0026 Clostridium phytofermentans ISDg hypothetical protein YP_001557156.1 42711 R 357809 CDS YP_001557157.1 160878189 5744947 43272..43535 1 NC_010001.1 KEGG: ckl:CKL_3823 hypothetical protein; hypothetical protein 43535 5744947 Cphy_0027 Clostridium phytofermentans ISDg hypothetical protein YP_001557157.1 43272 D 357809 CDS YP_001557158.1 160878190 5744949 44224..44937 1 NC_010001.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: btl:BALH_3033 possible UbiE/COQ5 methyltransferase family; methyltransferase type 11 44937 5744949 Cphy_0029 Clostridium phytofermentans ISDg methyltransferase type 11 YP_001557158.1 44224 D 357809 CDS YP_001557159.1 160878191 5744950 44956..45768 1 NC_010001.1 hypothetical protein 45768 5744950 Cphy_0030 Clostridium phytofermentans ISDg hypothetical protein YP_001557159.1 44956 D 357809 CDS YP_001557160.1 160878192 5744951 46157..47131 1 NC_010001.1 KEGG: cth:Cthe_1340 hypothetical protein; hypothetical protein 47131 5744951 Cphy_0031 Clostridium phytofermentans ISDg hypothetical protein YP_001557160.1 46157 D 357809 CDS YP_001557161.1 160878193 5744952 47419..48633 1 NC_010001.1 PFAM: type II secretion system protein E; KEGG: cth:Cthe_1339 type II secretion system protein E; type II secretion system protein E 48633 5744952 Cphy_0032 Clostridium phytofermentans ISDg type II secretion system protein E YP_001557161.1 47419 D 357809 CDS YP_001557162.1 160878194 5744953 48724..49467 1 NC_010001.1 KEGG: cth:Cthe_1338 Flp pilus assembly protein TadB-like protein; Flp pilus assembly protein TadB-like protein 49467 5744953 Cphy_0033 Clostridium phytofermentans ISDg Flp pilus assembly protein TadB-like protein YP_001557162.1 48724 D 357809 CDS YP_001557163.1 160878195 5744954 49484..50941 1 NC_010001.1 KEGG: cth:Cthe_1337 type II secretion system protein; hypothetical protein 50941 5744954 Cphy_0034 Clostridium phytofermentans ISDg hypothetical protein YP_001557163.1 49484 D 357809 CDS YP_001557164.1 160878196 5744955 51057..51260 1 NC_010001.1 hypothetical protein 51260 5744955 Cphy_0035 Clostridium phytofermentans ISDg hypothetical protein YP_001557164.1 51057 D 357809 CDS YP_001557165.1 160878197 5744956 51273..53756 1 NC_010001.1 KEGG: cth:Cthe_1829 chromosome segregation ATPases-like protein; hypothetical protein 53756 5744956 Cphy_0036 Clostridium phytofermentans ISDg hypothetical protein YP_001557165.1 51273 D 357809 CDS YP_001557166.1 160878198 5744957 53921..54835 1 NC_010001.1 hypothetical protein 54835 5744957 Cphy_0037 Clostridium phytofermentans ISDg hypothetical protein YP_001557166.1 53921 D 357809 CDS YP_001557167.1 160878199 5744958 54915..55349 1 NC_010001.1 PFAM: peptidase A24A prepilin type IV; KEGG: cth:Cthe_1335 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV 55349 5744958 Cphy_0038 Clostridium phytofermentans ISDg peptidase A24A prepilin type IV YP_001557167.1 54915 D 357809 CDS YP_001557168.1 160878200 5744959 55496..56068 1 NC_010001.1 hypothetical protein 56068 5744959 Cphy_0039 Clostridium phytofermentans ISDg hypothetical protein YP_001557168.1 55496 D 357809 CDS YP_001557169.1 160878201 5744960 56324..58066 1 NC_010001.1 PFAM: Forkhead-associated protein; KEGG: cth:Cthe_1334 FHA domain containing protein; FHA domain-containing protein 58066 5744960 Cphy_0040 Clostridium phytofermentans ISDg FHA domain-containing protein YP_001557169.1 56324 D 357809 CDS YP_001557170.1 160878202 5744961 58361..59860 1 NC_010001.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: cbf:CLI_2834 glycerol kinase; glycerol kinase 59860 5744961 Cphy_0041 Clostridium phytofermentans ISDg glycerol kinase YP_001557170.1 58361 D 357809 CDS YP_001557171.1 160878203 5744962 59873..61063 1 NC_010001.1 PFAM: Rhomboid family protein; KEGG: ctc:CTC00530 conserved membrane protein (rhomboid family); rhomboid family protein 61063 5744962 Cphy_0042 Clostridium phytofermentans ISDg rhomboid family protein YP_001557171.1 59873 D 357809 CDS YP_001557172.1 160878204 5744963 61053..62057 1 NC_010001.1 hypothetical protein 62057 5744963 Cphy_0043 Clostridium phytofermentans ISDg hypothetical protein YP_001557172.1 61053 D 357809 CDS YP_001557173.1 160878205 5744964 62196..62465 1 NC_010001.1 KEGG: cth:Cthe_2520 hypothetical protein; hypothetical protein 62465 5744964 Cphy_0044 Clostridium phytofermentans ISDg hypothetical protein YP_001557173.1 62196 D 357809 CDS YP_001557174.1 160878206 5744965 62635..63609 1 NC_010001.1 KEGG: amt:Amet_1444 hypothetical protein; hypothetical protein 63609 5744965 Cphy_0045 Clostridium phytofermentans ISDg hypothetical protein YP_001557174.1 62635 D 357809 CDS YP_001557175.1 160878207 5744966 63796..65364 1 NC_010001.1 KEGG: cth:Cthe_2144 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 65364 5744966 Cphy_0046 Clostridium phytofermentans ISDg DNA polymerase III subunits gamma and tau YP_001557175.1 63796 D 357809 CDS YP_001557176.1 160878208 5744967 65391..65750 1 NC_010001.1 PFAM: conserved hypothetical protein; KEGG: cbe:Cbei_4950 conserved hypothetical protein 103; hypothetical protein 65750 5744967 Cphy_0047 Clostridium phytofermentans ISDg hypothetical protein YP_001557176.1 65391 D 357809 CDS YP_001557177.1 160878209 5744968 66208..66804 1 NC_010001.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 66804 recR 5744968 recR Clostridium phytofermentans ISDg recombination protein RecR YP_001557177.1 66208 D 357809 CDS YP_001557178.1 160878210 5744969 66922..68031 1 NC_010001.1 KEGG: cho:Chro.30409 hypothetical protein; hypothetical protein 68031 5744969 Cphy_0049 Clostridium phytofermentans ISDg hypothetical protein YP_001557178.1 66922 D 357809 CDS YP_001557179.1 160878211 5744970 complement(68096..68689) 1 NC_010001.1 TIGRFAM: sporulation protein YyaC; PFAM: protein of unknown function DUF1256; KEGG: cth:Cthe_2165 protein of unknown function DUF1256; sporulation protein YyaC 68689 5744970 Cphy_0050 Clostridium phytofermentans ISDg sporulation protein YyaC YP_001557179.1 68096 R 357809 CDS YP_001557180.1 160878212 5744971 69062..70372 1 NC_010001.1 PFAM: Peptidoglycan-binding LysM; KEGG: rca:Rcas_0063 peptidoglycan-binding LysM; peptidoglycan-binding LysM 70372 5744971 Cphy_0051 Clostridium phytofermentans ISDg peptidoglycan-binding LysM YP_001557180.1 69062 D 357809 CDS YP_001557181.1 160878213 5744972 70537..71733 1 NC_010001.1 hypothetical protein 71733 5744972 Cphy_0052 Clostridium phytofermentans ISDg hypothetical protein YP_001557181.1 70537 D 357809 CDS YP_001557182.1 160878214 5744973 71737..72438 1 NC_010001.1 KEGG: cth:Cthe_2712 hypothetical protein; hypothetical protein 72438 5744973 Cphy_0053 Clostridium phytofermentans ISDg hypothetical protein YP_001557182.1 71737 D 357809 CDS YP_001557183.1 160878215 5744974 72635..73597 1 NC_010001.1 TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: tde:TDE0157 KHG/KDPG family aldolase/carbohydrate kinase, PfkB family; 2-dehydro-3-deoxyphosphooctonate aldolase 73597 5744974 Cphy_0054 Clostridium phytofermentans ISDg 2-dehydro-3-deoxyphosphooctonate aldolase YP_001557183.1 72635 D 357809 CDS YP_001557184.1 160878216 5744975 73980..75317 1 NC_010001.1 hypothetical protein 75317 5744975 Cphy_0055 Clostridium phytofermentans ISDg hypothetical protein YP_001557184.1 73980 D 357809 CDS YP_001557185.1 160878217 5744983 81998..82324 1 NC_010001.1 hypothetical protein 82324 5744983 Cphy_0056 Clostridium phytofermentans ISDg hypothetical protein YP_001557185.1 81998 D 357809 CDS YP_001557186.1 160878218 5744984 complement(82305..82850) 1 NC_010001.1 hypothetical protein 82850 5744984 Cphy_0057 Clostridium phytofermentans ISDg hypothetical protein YP_001557186.1 82305 R 357809 CDS YP_001557187.1 160878219 5744985 83519..85855 1 NC_010001.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: cbh:CLC_2728 xanthine dehydrogenase family protein, molybdopterin-binding subunit; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 85855 5744985 Cphy_0058 Clostridium phytofermentans ISDg molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001557187.1 83519 D 357809 CDS YP_001557188.1 160878220 5744986 85842..86678 1 NC_010001.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: cbf:CLI_2901 xanthine dehydrogenase family protein, FAD-binding subunit; molybdopterin dehydrogenase FAD-binding 86678 5744986 Cphy_0059 Clostridium phytofermentans ISDg molybdopterin dehydrogenase FAD-binding YP_001557188.1 85842 D 357809 CDS YP_001557189.1 160878221 5744987 86662..87135 1 NC_010001.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: cbf:CLI_0333 xanthine dehydrogenase family protein, iron-sulfur-binding subunit; 2Fe-2S iron-sulfur cluster binding domain-containing protein 87135 5744987 Cphy_0060 Clostridium phytofermentans ISDg 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001557189.1 86662 D 357809 CDS YP_001557190.1 160878222 5744988 87449..87607 1 NC_010001.1 hypothetical protein 87607 5744988 Cphy_0061 Clostridium phytofermentans ISDg hypothetical protein YP_001557190.1 87449 D 357809 CDS YP_001557191.1 160878223 5744989 complement(87739..88626) 1 NC_010001.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 88626 5744989 Cphy_0062 Clostridium phytofermentans ISDg prolipoprotein diacylglyceryl transferase YP_001557191.1 87739 R 357809 CDS YP_001557192.1 160878224 5744990 89122..89832 1 NC_010001.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: bvu:BVU_1472 histidinol phosphatase and related hydrolase of the PHP family; phosphotransferase domain-containing protein 89832 5744990 Cphy_0063 Clostridium phytofermentans ISDg phosphotransferase domain-containing protein YP_001557192.1 89122 D 357809 CDS YP_001557193.1 160878225 5744991 complement(89917..90717) 1 NC_010001.1 PFAM: helix-turn-helix domain protein; KEGG: cbe:Cbei_3749 transcriptional regulator, XRE family; XRE family transcriptional regulator 90717 5744991 Cphy_0064 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001557193.1 89917 R 357809 CDS YP_001557194.1 160878226 5744992 complement(90930..91751) 1 NC_010001.1 PFAM: helix-turn-helix domain protein; KEGG: cpe:CPE0727 hypothetical protein; XRE family transcriptional regulator 91751 5744992 Cphy_0065 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001557194.1 90930 R 357809 CDS YP_001557195.1 160878227 5744993 complement(92474..93670) 1 NC_010001.1 hypothetical protein 93670 5744993 Cphy_0066 Clostridium phytofermentans ISDg hypothetical protein YP_001557195.1 92474 R 357809 CDS YP_001557196.1 160878228 5744994 complement(93690..96077) 1 NC_010001.1 KEGG: tva:TVAG_032240 flocculin, PROSITE: SER_RICH THR_RICH; hypothetical protein 96077 5744994 Cphy_0067 Clostridium phytofermentans ISDg hypothetical protein YP_001557196.1 93690 R 357809 CDS YP_001557197.1 160878229 5744995 96504..98186 1 NC_010001.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: syn:slr0891 N-acetylmuramoyl-L-alanine amidase; cell wall hydrolase/autolysin 98186 5744995 Cphy_0068 Clostridium phytofermentans ISDg cell wall hydrolase/autolysin YP_001557197.1 96504 D 357809 CDS YP_001557198.1 160878230 5744996 98284..98904 1 NC_010001.1 KEGG: cth:Cthe_0079 hypothetical protein; hypothetical protein 98904 5744996 Cphy_0069 Clostridium phytofermentans ISDg hypothetical protein YP_001557198.1 98284 D 357809 CDS YP_001557199.1 160878231 5744997 99198..100577 1 NC_010001.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: cbe:Cbei_0369 peptidase U62, modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase 100577 5744997 Cphy_0070 Clostridium phytofermentans ISDg peptidase U62 modulator of DNA gyrase YP_001557199.1 99198 D 357809 CDS YP_001557200.1 160878232 5744998 100774..102117 1 NC_010001.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: cbe:Cbei_0370 peptidase U62, modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase 102117 5744998 Cphy_0071 Clostridium phytofermentans ISDg peptidase U62 modulator of DNA gyrase YP_001557200.1 100774 D 357809 CDS YP_001557201.1 160878233 5744999 102256..103299 1 NC_010001.1 KEGG: sth:STH2880 hypothetical protein; hypothetical protein 103299 5744999 Cphy_0072 Clostridium phytofermentans ISDg hypothetical protein YP_001557201.1 102256 D 357809 CDS YP_001557202.1 160878234 5745000 103427..103810 1 NC_010001.1 PFAM: regulatory protein GntR HTH; KEGG: cac:CAC0599 transcriptional regulator, GntR family; GntR family transcriptional regulator 103810 5745000 Cphy_0073 Clostridium phytofermentans ISDg GntR family transcriptional regulator YP_001557202.1 103427 D 357809 CDS YP_001557203.1 160878235 5745001 103800..104237 1 NC_010001.1 hypothetical protein 104237 5745001 Cphy_0074 Clostridium phytofermentans ISDg hypothetical protein YP_001557203.1 103800 D 357809 CDS YP_001557204.1 160878236 5745002 104245..105003 1 NC_010001.1 KEGG: efa:EF0300 hypothetical protein; hypothetical protein 105003 5745002 Cphy_0075 Clostridium phytofermentans ISDg hypothetical protein YP_001557204.1 104245 D 357809 CDS YP_001557205.1 160878237 5745003 105399..106172 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bay:RBAM_030540 multidrug ABC transporter, ATPase component; ABC transporter 106172 5745003 Cphy_0076 Clostridium phytofermentans ISDg ABC transporter YP_001557205.1 105399 D 357809 CDS YP_001557206.1 160878238 5745004 106174..107232 1 NC_010001.1 PFAM: ABC-2 type transporter; KEGG: spa:M6_Spy0585 SagH; ABC-2 type transporter 107232 5745004 Cphy_0077 Clostridium phytofermentans ISDg ABC-2 type transporter YP_001557206.1 106174 D 357809 CDS YP_001557207.1 160878239 5745005 107229..108488 1 NC_010001.1 PFAM: ABC-2 type transporter; KEGG: tte:TTE2529 ABC-type multidrug transport system, permease component; ABC-2 type transporter 108488 5745005 Cphy_0078 Clostridium phytofermentans ISDg ABC-2 type transporter YP_001557207.1 107229 D 357809 CDS YP_001557208.1 160878240 5745006 108728..109885 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: bld:BLi04006 YxjM; integral membrane sensor signal transduction histidine kinase 109885 5745006 Cphy_0079 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001557208.1 108728 D 357809 CDS YP_001557209.1 160878241 5745007 109893..110531 1 NC_010001.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bca:BCE_1863 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 110531 5745007 Cphy_0080 Clostridium phytofermentans ISDg two component LuxR family transcriptional regulator YP_001557209.1 109893 D 357809 CDS YP_001557210.1 160878242 5745008 110768..111313 1 NC_010001.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cbe:Cbei_2490 rubrerythrin; rubrerythrin 111313 5745008 Cphy_0081 Clostridium phytofermentans ISDg rubrerythrin YP_001557210.1 110768 D 357809 CDS YP_001557211.1 160878243 5745009 111417..111740 1 NC_010001.1 PFAM: protein of unknown function DUF1540; KEGG: cbe:Cbei_2324 protein of unknown function DUF1540; hypothetical protein 111740 5745009 Cphy_0082 Clostridium phytofermentans ISDg hypothetical protein YP_001557211.1 111417 D 357809 CDS YP_001557212.1 160878244 5745010 111752..112369 1 NC_010001.1 PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin; flavin reductase domain-containing protein 112369 5745010 Cphy_0083 Clostridium phytofermentans ISDg flavin reductase domain-containing protein YP_001557212.1 111752 D 357809 CDS YP_001557213.1 160878245 5745011 112892..113914 1 NC_010001.1 KEGG: ppe:PEPE_1302 D-alanine-D-alanine ligase related ATP-grasp enzyme; TIGRFAM: D-alanine--D-alanine ligase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; RimK domain protein ATP-grasp; D-alanine--D-alanine ligase 113914 5745011 Cphy_0084 Clostridium phytofermentans ISDg D-alanine--D-alanine ligase YP_001557213.1 112892 D 357809 CDS YP_001557214.1 160878246 5745012 114069..115049 1 NC_010001.1 hypothetical protein 115049 5745012 Cphy_0085 Clostridium phytofermentans ISDg hypothetical protein YP_001557214.1 114069 D 357809 CDS YP_001557215.1 160878247 5745013 complement(115163..115348) 1 NC_010001.1 KEGG: cbf:CLI_1824 hypothetical protein; hypothetical protein 115348 5745013 Cphy_0086 Clostridium phytofermentans ISDg hypothetical protein YP_001557215.1 115163 R 357809 CDS YP_001557216.1 160878248 5745014 complement(115437..117140) 1 NC_010001.1 TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: cbe:Cbei_4110 hydrogenase, Fe-only; hydrogenase, Fe-only 117140 5745014 Cphy_0087 Clostridium phytofermentans ISDg hydrogenase, Fe-only YP_001557216.1 115437 R 357809 CDS YP_001557217.1 160878249 5745015 complement(117158..119044) 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: cbe:Cbei_4111 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 119044 5745015 Cphy_0088 Clostridium phytofermentans ISDg NADH dehydrogenase (quinone) YP_001557217.1 117158 R 357809 CDS YP_001557218.1 160878250 5745016 complement(119038..119523) 1 NC_010001.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: cbe:Cbei_4112 NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH dehydrogenase (ubiquinone) 24 kDa subunit 119523 5745016 Cphy_0089 Clostridium phytofermentans ISDg NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_001557218.1 119038 R 357809 CDS YP_001557219.1 160878251 5745017 complement(120033..121487) 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; hydrogenase large subunit domain protein; KEGG: cbe:Cbei_0327 ferredoxin hydrogenase; ferredoxin hydrogenase 121487 5745017 Cphy_0090 Clostridium phytofermentans ISDg ferredoxin hydrogenase YP_001557219.1 120033 R 357809 CDS YP_001557220.1 160878252 5745018 complement(121534..122706) 1 NC_010001.1 PFAM: Stage II sporulation E family protein; KEGG: cth:Cthe_0427 serine phosphatase; Ser/Thr phosphatase 122706 5745018 Cphy_0091 Clostridium phytofermentans ISDg Ser/Thr phosphatase YP_001557220.1 121534 R 357809 CDS YP_001557221.1 160878253 5745019 complement(122755..124488) 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; hydrogenase large subunit domain protein; Fe-S cluster domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: tte:TTE0697 ferredoxin 2; PAS/PAC sensor protein 124488 5745019 Cphy_0092 Clostridium phytofermentans ISDg PAS/PAC sensor protein YP_001557221.1 122755 R 357809 CDS YP_001557222.1 160878254 5745020 complement(124488..124730) 1 NC_010001.1 KEGG: cth:Cthe_0425 hypothetical protein; hypothetical protein 124730 5745020 Cphy_0093 Clostridium phytofermentans ISDg hypothetical protein YP_001557222.1 124488 R 357809 CDS YP_001557223.1 160878255 5745021 complement(124837..125703) 1 NC_010001.1 PFAM: DegV family protein; KEGG: oih:OB2518 hypothetical protein; DegV family protein 125703 5745021 Cphy_0094 Clostridium phytofermentans ISDg DegV family protein YP_001557223.1 124837 R 357809 CDS YP_001557224.1 160878256 5745022 126311..127729 1 NC_010001.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 127729 asnC 5745022 asnC Clostridium phytofermentans ISDg asparaginyl-tRNA synthetase YP_001557224.1 126311 D 357809 CDS YP_001557225.1 160878257 5745023 complement(127890..128408) 1 NC_010001.1 PFAM: protein of unknown function DUF988; KEGG: cbf:CLI_3316 hypothetical protein; hypothetical protein 128408 5745023 Cphy_0096 Clostridium phytofermentans ISDg hypothetical protein YP_001557225.1 127890 R 357809 CDS YP_001557226.1 160878258 5745024 129389..129880 1 NC_010001.1 PFAM: helix-turn-helix domain protein; KEGG: lsl:LSL_1338 DNA-binding protein; XRE family transcriptional regulator 129880 5745024 Cphy_0097 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001557226.1 129389 D 357809 CDS YP_001557227.1 160878259 5745025 complement(130233..131072) 1 NC_010001.1 PFAM: regulatory protein MerR; KEGG: cdf:CD1016 MerR-family transcriptional regulator; MerR family transcriptional regulator 131072 5745025 Cphy_0098 Clostridium phytofermentans ISDg MerR family transcriptional regulator YP_001557227.1 130233 R 357809 CDS YP_001557228.1 160878260 5745026 131424..133151 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD2818 ABC transporter, ATP-binding/permease; ABC transporter related 133151 5745026 Cphy_0099 Clostridium phytofermentans ISDg ABC transporter related YP_001557228.1 131424 D 357809 CDS YP_001557229.1 160878261 5745027 133148..134902 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD2817 ABC transporter, ATP-binding/permease; ABC transporter related 134902 5745027 Cphy_0100 Clostridium phytofermentans ISDg ABC transporter related YP_001557229.1 133148 D 357809 CDS YP_001557230.1 160878262 5744251 complement(135190..136272) 1 NC_010001.1 KEGG: cbe:Cbei_4185 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 136272 5744251 Cphy_0101 Clostridium phytofermentans ISDg metal dependent phosphohydrolase YP_001557230.1 135190 R 357809 CDS YP_001557231.1 160878263 5744252 136465..137550 1 NC_010001.1 PFAM: metallophosphoesterase; KEGG: cth:Cthe_2411 metallophosphoesterase; metallophosphoesterase 137550 5744252 Cphy_0102 Clostridium phytofermentans ISDg metallophosphoesterase YP_001557231.1 136465 D 357809 CDS YP_001557232.1 160878264 5744253 137559..139694 1 NC_010001.1 KEGG: lga:LGAS_1449 DNA repair ATPase; hypothetical protein 139694 5744253 Cphy_0103 Clostridium phytofermentans ISDg hypothetical protein YP_001557232.1 137559 D 357809 CDS YP_001557233.1 160878265 5744254 complement(139859..141028) 1 NC_010001.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 141028 5744254 Cphy_0104 Clostridium phytofermentans ISDg phosphoribosylpyrophosphate synthetase YP_001557233.1 139859 R 357809 CDS YP_001557234.1 160878266 5744255 complement(141256..142260) 1 NC_010001.1 acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 142260 5744255 Cphy_0105 Clostridium phytofermentans ISDg DNA replication protein DnaC YP_001557234.1 141256 R 357809 CDS YP_001557235.1 160878267 5744256 complement(142366..143478) 1 NC_010001.1 TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: tte:TTE2692 hypothetical protein; primosome subunit DnaD 143478 5744256 Cphy_0106 Clostridium phytofermentans ISDg primosome subunit DnaD YP_001557235.1 142366 R 357809 CDS YP_001557236.1 160878268 5744257 complement(143877..145286) 1 NC_010001.1 TIGRFAM: UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: ckl:CKL_0143 MurC; UDP-N-acetylmuramate--L-alanine ligase 145286 5744257 Cphy_0107 Clostridium phytofermentans ISDg UDP-N-acetylmuramate--L-alanine ligase YP_001557236.1 143877 R 357809 CDS YP_001557237.1 160878269 5744259 146427..146708 1 NC_010001.1 PFAM: SpoVG family protein; KEGG: cbf:CLI_3766 stage V sporulation protein G; SpoVG family protein 146708 5744259 Cphy_0109 Clostridium phytofermentans ISDg SpoVG family protein YP_001557237.1 146427 D 357809 CDS YP_001557238.1 160878270 5744260 147354..148388 1 NC_010001.1 PFAM: polysaccharide deacetylase; KEGG: lwe:lwe0378 polysaccharide deacetylase family protein; polysaccharide deacetylase 148388 5744260 Cphy_0110 Clostridium phytofermentans ISDg polysaccharide deacetylase YP_001557238.1 147354 D 357809 CDS YP_001557239.1 160878271 5744261 148828..149403 1 NC_010001.1 PFAM: peptidyl-tRNA hydrolase; KEGG: cac:CAC3217 stage V sporulation protein C, peptidyl-tRNA hydrolase; aminoacyl-tRNA hydrolase 149403 5744261 Cphy_0111 Clostridium phytofermentans ISDg aminoacyl-tRNA hydrolase YP_001557239.1 148828 D 357809 CDS YP_001557240.1 160878272 5744262 149444..152983 1 NC_010001.1 KEGG: tte:TTE2565 Transcription-repair coupling factor - superfamily II helicase; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor 152983 5744262 Cphy_0112 Clostridium phytofermentans ISDg transcription-repair coupling factor YP_001557240.1 149444 D 357809 CDS YP_001557241.1 160878273 5744263 153051..154184 1 NC_010001.1 KEGG: cdf:CD3500 foldase lipoprotein (late stage protein export lipoprotein); hypothetical protein 154184 5744263 Cphy_0113 Clostridium phytofermentans ISDg hypothetical protein YP_001557241.1 153051 D 357809 CDS YP_001557242.1 160878274 5744264 154273..155049 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0410 ABC-type multidrug transport system, ATPase component; ABC transporter 155049 5744264 Cphy_0114 Clostridium phytofermentans ISDg ABC transporter YP_001557242.1 154273 D 357809 CDS YP_001557243.1 160878275 5744265 155051..156268 1 NC_010001.1 PFAM: ABC-2 type transporter; KEGG: tte:TTE0411 ABC-type Na+ efflux pump, permease component; ABC-2 type transporter 156268 5744265 Cphy_0115 Clostridium phytofermentans ISDg ABC-2 type transporter YP_001557243.1 155051 D 357809 CDS YP_001557244.1 160878276 5744266 156368..156760 1 NC_010001.1 PFAM: regulatory protein ArsR; KEGG: fno:Fnod_1613 regulatory protein ArsR; ArsR family transcriptional regulator 156760 5744266 Cphy_0116 Clostridium phytofermentans ISDg ArsR family transcriptional regulator YP_001557244.1 156368 D 357809 CDS YP_001557245.1 160878277 5744267 156810..157454 1 NC_010001.1 PFAM: regulatory protein GntR HTH; TrkA-C domain protein; KEGG: cbe:Cbei_2872 TrkA-C domain protein; TrkA domain-containing protein 157454 5744267 Cphy_0117 Clostridium phytofermentans ISDg TrkA domain-containing protein YP_001557245.1 156810 D 357809 CDS YP_001557246.1 160878278 5744268 158002..159138 1 NC_010001.1 KEGG: cbe:Cbei_2871 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 159138 5744268 Cphy_0118 Clostridium phytofermentans ISDg glycine betaine/L-proline ABC transporter ATPase YP_001557246.1 158002 D 357809 CDS YP_001557247.1 160878279 5744269 159135..160706 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cbe:Cbei_2870 substrate-binding region of ABC-type glycine betaine transport system; substrate-binding region of ABC-type glycine betaine transport system 160706 5744269 Cphy_0119 Clostridium phytofermentans ISDg substrate-binding region of ABC-type glycine betaine transport system YP_001557247.1 159135 D 357809 CDS YP_001557248.1 160878280 5744270 161160..161375 1 NC_010001.1 PFAM: Heavy metal transport/detoxification protein; KEGG: fnu:FN0259 zinc-transporting ATPase; heavy metal transport/detoxification protein 161375 5744270 Cphy_0120 Clostridium phytofermentans ISDg heavy metal transport/detoxification protein YP_001557248.1 161160 D 357809 CDS YP_001557249.1 160878281 5744271 161468..163318 1 NC_010001.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: btk:BT9727_0506 cation-transporting ATPase, P-type; heavy metal translocating P-type ATPase 163318 5744271 Cphy_0121 Clostridium phytofermentans ISDg heavy metal translocating P-type ATPase YP_001557249.1 161468 D 357809 CDS YP_001557250.1 160878282 5744272 163702..164154 1 NC_010001.1 PFAM: NUDIX hydrolase; KEGG: sgo:SGO_0168 hydrolase, NUDIX family; NUDIX hydrolase 164154 5744272 Cphy_0122 Clostridium phytofermentans ISDg NUDIX hydrolase YP_001557250.1 163702 D 357809 CDS YP_001557251.1 160878283 5744273 164245..165132 1 NC_010001.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: lac:LBA1598 glycolate oxidase; FMN-dependent alpha-hydroxy acid dehydrogenase 165132 5744273 Cphy_0123 Clostridium phytofermentans ISDg FMN-dependent alpha-hydroxy acid dehydrogenase YP_001557251.1 164245 D 357809 CDS YP_001557252.1 160878284 5744274 165343..166179 1 NC_010001.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_5936 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 166179 5744274 Cphy_0124 Clostridium phytofermentans ISDg xylose isomerase domain-containing protein YP_001557252.1 165343 D 357809 CDS YP_001557253.1 160878285 5744275 complement(166419..168566) 1 NC_010001.1 PFAM: sulfatase; KEGG: cpf:CPF_1807 hypothetical protein; sulfatase 168566 5744275 Cphy_0125 Clostridium phytofermentans ISDg sulfatase YP_001557253.1 166419 R 357809 CDS YP_001557254.1 160878286 5744276 169161..169955 1 NC_010001.1 KEGG: cno:NT01CX_2290 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 169955 5744276 Cphy_0126 Clostridium phytofermentans ISDg tRNA pseudouridine synthase A YP_001557254.1 169161 D 357809 CDS YP_001557255.1 160878287 5744277 170160..170705 1 NC_010001.1 TIGRFAM: transcriptional regulator, AbrB family; stage V sporulation protein T; PFAM: SpoVT/AbrB domain protein; KEGG: cpe:CPE2482 stage V sprulation protein T; AbrB family transcriptional regulator 170705 5744277 Cphy_0127 Clostridium phytofermentans ISDg AbrB family transcriptional regulator YP_001557255.1 170160 D 357809 CDS YP_001557256.1 160878288 5744278 170950..172281 1 NC_010001.1 PFAM: amino acid permease-associated region; KEGG: sak:SAK_1604 permease, amino acid-polyamine-organocation (APC) family; amino acid permease 172281 5744278 Cphy_0128 Clostridium phytofermentans ISDg amino acid permease YP_001557256.1 170950 D 357809 CDS YP_001557257.1 160878289 5744279 172472..172795 1 NC_010001.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: cth:Cthe_1854 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 172795 5744279 Cphy_0129 Clostridium phytofermentans ISDg methylated-DNA--protein-cysteine methyltransferase YP_001557257.1 172472 D 357809 CDS YP_001557258.1 160878290 5744280 172888..173892 1 NC_010001.1 PFAM: Patatin; KEGG: aha:AHA_2929 patatin; patatin 173892 5744280 Cphy_0130 Clostridium phytofermentans ISDg patatin YP_001557258.1 172888 D 357809 CDS YP_001557259.1 160878291 5744281 174425..176359 1 NC_010001.1 KEGG: dsy:DSY1218 hypothetical protein; hypothetical protein 176359 5744281 Cphy_0131 Clostridium phytofermentans ISDg hypothetical protein YP_001557259.1 174425 D 357809 CDS YP_001557260.1 160878292 5744282 176379..177092 1 NC_010001.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: chy:CHY_0204 tetrapyrrole methylase family protein/MazG family protein; MazG family protein 177092 5744282 Cphy_0132 Clostridium phytofermentans ISDg MazG family protein YP_001557260.1 176379 D 357809 CDS YP_001557261.1 160878293 5744283 177506..177781 1 NC_010001.1 PFAM: histone family protein DNA-binding protein; KEGG: tte:TTE2453 Bacterial nucleoid DNA-binding protein; histone family protein DNA-binding protein 177781 5744283 Cphy_0133 Clostridium phytofermentans ISDg histone family protein DNA-binding protein YP_001557261.1 177506 D 357809 CDS YP_001557262.1 160878294 5744284 177952..178191 1 NC_010001.1 PFAM: RNA-binding S4 domain protein; KEGG: cpf:CPF_2801 S4 domain protein; RNA-binding S4 domain-containing protein 178191 5744284 Cphy_0134 Clostridium phytofermentans ISDg RNA-binding S4 domain-containing protein YP_001557262.1 177952 D 357809 CDS YP_001557263.1 160878295 5744285 178292..178576 1 NC_010001.1 TIGRFAM: sporulation protein YabP; PFAM: YabP family protein; KEGG: cth:Cthe_2659 YabP-like protein; sporulation protein YabP 178576 5744285 Cphy_0135 Clostridium phytofermentans ISDg sporulation protein YabP YP_001557263.1 178292 D 357809 CDS YP_001557264.1 160878296 5744286 178585..179220 1 NC_010001.1 KEGG: amt:Amet_0170 spore cortex biosynthesis protein YabQ; hypothetical protein 179220 5744286 Cphy_0136 Clostridium phytofermentans ISDg hypothetical protein YP_001557264.1 178585 D 357809 CDS YP_001557265.1 160878297 5744287 179261..179506 1 NC_010001.1 PFAM: Septum formation initiator; septum formation initiator 179506 5744287 Cphy_0137 Clostridium phytofermentans ISDg septum formation initiator YP_001557265.1 179261 D 357809 CDS YP_001557266.1 160878298 5744289 180381..181964 1 NC_010001.1 KEGG: cth:Cthe_2681 serine phosphatase; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; protein serine/threonine phosphatase 181964 5744289 Cphy_0138 Clostridium phytofermentans ISDg protein serine/threonine phosphatase YP_001557266.1 180381 D 357809 CDS YP_001557267.1 160878299 5744290 182200..183678 1 NC_010001.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: ckl:CKL_0170 TilS; tRNA(Ile)-lysidine synthetase 183678 5744290 Cphy_0139 Clostridium phytofermentans ISDg tRNA(Ile)-lysidine synthetase YP_001557267.1 182200 D 357809 CDS YP_001557268.1 160878300 5744291 183710..184234 1 NC_010001.1 KEGG: tte:TTE2394 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 184234 5744291 Cphy_0140 Clostridium phytofermentans ISDg hypoxanthine phosphoribosyltransferase YP_001557268.1 183710 D 357809 CDS YP_001557269.1 160878301 5744292 184253..186082 1 NC_010001.1 KEGG: csc:Csac_1210 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 186082 5744292 Cphy_0141 Clostridium phytofermentans ISDg ATP-dependent metalloprotease FtsH YP_001557269.1 184253 D 357809 CDS YP_001557270.1 160878302 5744293 186300..186788 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbh:CLC_1033 acetyltransferase, GNAT family; N-acetyltransferase GCN5 186788 5744293 Cphy_0142 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001557270.1 186300 D 357809 CDS YP_001557271.1 160878303 5744297 187663..189414 1 NC_010001.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ctc:CTC00992 magnesium-protoporphyrin IX monomethyl ester oxidative cyclase; cobalamin B12-binding domain-containing protein 189414 5744297 Cphy_0143 Clostridium phytofermentans ISDg cobalamin B12-binding domain-containing protein YP_001557271.1 187663 D 357809 CDS YP_001557272.1 160878304 5744298 189479..190168 1 NC_010001.1 KEGG: cth:Cthe_1283 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 190168 5744298 Cphy_0144 Clostridium phytofermentans ISDg endonuclease III YP_001557272.1 189479 D 357809 CDS YP_001557273.1 160878305 5744299 190232..190939 1 NC_010001.1 KEGG: cth:Cthe_0996 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 190939 5744299 Cphy_0145 Clostridium phytofermentans ISDg DNA polymerase III subunit epsilon YP_001557273.1 190232 D 357809 CDS YP_001557274.1 160878306 5744300 complement(190986..191600) 1 NC_010001.1 hypothetical protein 191600 5744300 Cphy_0146 Clostridium phytofermentans ISDg hypothetical protein YP_001557274.1 190986 R 357809 CDS YP_001557275.1 160878307 5744301 191877..192836 1 NC_010001.1 PFAM: VanW family protein; KEGG: csc:Csac_1552 VanW family protein; VanW family protein 192836 5744301 Cphy_0147 Clostridium phytofermentans ISDg VanW family protein YP_001557275.1 191877 D 357809 CDS YP_001557276.1 160878308 5744302 193050..194048 1 NC_010001.1 PFAM: AIR synthase related protein domain protein; KEGG: tte:TTE1537 hydrogenase maturation factor; AIR synthase-like protein 194048 5744302 Cphy_0148 Clostridium phytofermentans ISDg AIR synthase-like protein YP_001557276.1 193050 D 357809 CDS YP_001557277.1 160878309 5744303 194082..194564 1 NC_010001.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: csc:Csac_1961 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 194564 5744303 Cphy_0149 Clostridium phytofermentans ISDg AsnC family transcriptional regulator YP_001557277.1 194082 D 357809 CDS YP_001557278.1 160878310 5744304 194561..195721 1 NC_010001.1 PFAM: aminotransferase class I and II; KEGG: cth:Cthe_0363 aminotransferase, class I and II; class I and II aminotransferase 195721 5744304 Cphy_0150 Clostridium phytofermentans ISDg class I and II aminotransferase YP_001557278.1 194561 D 357809 CDS YP_001557279.1 160878311 5744305 195976..196446 1 NC_010001.1 PFAM: CheC domain protein; KEGG: csc:Csac_1295 CheC domain protein; chemotaxis protein CheC 196446 5744305 Cphy_0151 Clostridium phytofermentans ISDg chemotaxis protein CheC YP_001557279.1 195976 D 357809 CDS YP_001557280.1 160878312 5744306 196601..197101 1 NC_010001.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cth:Cthe_0127 RNA methyltransferase, TrmH family, group 2; tRNA/rRNA methyltransferase SpoU 197101 5744306 Cphy_0152 Clostridium phytofermentans ISDg tRNA/rRNA methyltransferase SpoU YP_001557280.1 196601 D 357809 CDS YP_001557281.1 160878313 5744307 197521..199911 1 NC_010001.1 KEGG: cth:Cthe_1014 MutS2 family protein; TIGRFAM: MutS2 family protein; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein; MutS2 family protein 199911 5744307 Cphy_0153 Clostridium phytofermentans ISDg MutS2 family protein YP_001557281.1 197521 D 357809 CDS YP_001557282.1 160878314 5744308 199945..200661 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1288 two component transcriptional regulator, winged helix family; two component transcriptional regulator 200661 5744308 Cphy_0154 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001557282.1 199945 D 357809 CDS YP_001557283.1 160878315 5744309 200702..202090 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE2569 sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 202090 5744309 Cphy_0155 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001557283.1 200702 D 357809 CDS YP_001557284.1 160878316 5744310 202257..203633 1 NC_010001.1 PFAM: PDZ/DHR/GLGF domain protein; KEGG: ckl:CKL_2696 predicted protease; PDZ/DHR/GLGF domain-containing protein 203633 5744310 Cphy_0156 Clostridium phytofermentans ISDg PDZ/DHR/GLGF domain-containing protein YP_001557284.1 202257 D 357809 CDS YP_001557285.1 160878317 5744311 complement(203748..204632) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbh:CLC_0312 acetyltransferase, GNAT family; N-acetyltransferase GCN5 204632 5744311 Cphy_0157 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001557285.1 203748 R 357809 CDS YP_001557286.1 160878318 5744312 204918..205865 1 NC_010001.1 KEGG: sat:SYN_02192 HD-superfamily hydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 205865 5744312 Cphy_0158 Clostridium phytofermentans ISDg metal dependent phosphohydrolase YP_001557286.1 204918 D 357809 CDS YP_001557287.1 160878319 5745028 206112..207518 1 NC_010001.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: amt:Amet_4060 RNA methyltransferase, TrmA family; RNA methyltransferase 207518 5745028 Cphy_0159 Clostridium phytofermentans ISDg RNA methyltransferase YP_001557287.1 206112 D 357809 CDS YP_001557288.1 160878320 5745029 207721..208305 1 NC_010001.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cth:Cthe_1389 metal dependent phosphohydrolase; metal dependent phosphohydrolase 208305 5745029 Cphy_0160 Clostridium phytofermentans ISDg metal dependent phosphohydrolase YP_001557288.1 207721 D 357809 CDS YP_001557289.1 160878321 5745030 208327..208629 1 NC_010001.1 KEGG: bld:BLi04142 YkgB; hypothetical protein 208629 5745030 Cphy_0161 Clostridium phytofermentans ISDg hypothetical protein YP_001557289.1 208327 D 357809 CDS YP_001557290.1 160878322 5745031 208651..209175 1 NC_010001.1 KEGG: dsy:DSY1015 hypothetical protein; hypothetical protein 209175 5745031 Cphy_0162 Clostridium phytofermentans ISDg hypothetical protein YP_001557290.1 208651 D 357809 CDS YP_001557291.1 160878323 5745032 209338..209613 1 NC_010001.1 KEGG: cbe:Cbei_2447 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 209613 5745032 Cphy_0163 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001557291.1 209338 D 357809 CDS YP_001557292.1 160878324 5745033 209694..210575 1 NC_010001.1 PFAM: beta-lactamase domain protein; KEGG: cdf:CD1802 hydrolase; beta-lactamase domain-containing protein 210575 5745033 Cphy_0164 Clostridium phytofermentans ISDg beta-lactamase domain-containing protein YP_001557292.1 209694 D 357809 CDS YP_001557293.1 160878325 5745034 210894..211790 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: ctc:CTC01432 transcriptional regulatory protein; AraC family transcriptional regulator 211790 5745034 Cphy_0165 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001557293.1 210894 D 357809 CDS YP_001557294.1 160878326 5745036 212694..213392 1 NC_010001.1 PFAM: transglutaminase domain protein; KEGG: amt:Amet_3922 hypothetical protein; transglutaminase domain-containing protein 213392 5745036 Cphy_0168 Clostridium phytofermentans ISDg transglutaminase domain-containing protein YP_001557294.1 212694 D 357809 CDS YP_001557295.1 160878327 5745037 complement(213494..213919) 1 NC_010001.1 PFAM: helix-turn-helix domain protein; KEGG: bay:RBAM_012510 Xre; XRE family transcriptional regulator 213919 5745037 Cphy_0169 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001557295.1 213494 R 357809 CDS YP_001557296.1 160878328 5745038 214132..214602 1 NC_010001.1 PFAM: DNA repair protein RadC; KEGG: cpr:CPR_2111 DNA repair protein, RadC family; DNA repair protein RadC 214602 5745038 Cphy_0170 Clostridium phytofermentans ISDg DNA repair protein RadC YP_001557296.1 214132 D 357809 CDS YP_001557297.1 160878329 5745039 complement(214786..216945) 1 NC_010001.1 TIGRFAM: diguanylate cyclase; PFAM: helix-turn-helix- domain containing protein AraC type; GGDEF domain containing protein; KEGG: cbe:Cbei_3076 diguanylate cyclase; AraC family transcriptional regulator 216945 5745039 Cphy_0171 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001557297.1 214786 R 357809 CDS YP_001557298.1 160878330 5745040 217242..218183 1 NC_010001.1 PFAM: helix-turn-helix domain protein; KEGG: spd:SPD_1745 transcriptional regulator PlcR; helix-turn-helix domain-containing protein 218183 5745040 Cphy_0172 Clostridium phytofermentans ISDg helix-turn-helix domain-containing protein YP_001557298.1 217242 D 357809 CDS YP_001557299.1 160878331 5745041 218439..219458 1 NC_010001.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sun:SUN_0557 hypothetical protein; diguanylate cyclase 219458 5745041 Cphy_0173 Clostridium phytofermentans ISDg diguanylate cyclase YP_001557299.1 218439 D 357809 CDS YP_001557300.1 160878332 5745042 219658..219915 1 NC_010001.1 KEGG: llc:LACR_1589 peptidase E; hypothetical protein 219915 5745042 Cphy_0174 Clostridium phytofermentans ISDg hypothetical protein YP_001557300.1 219658 D 357809 CDS YP_001557301.1 160878333 5745043 complement(220274..222049) 1 NC_010001.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen 222049 5745043 Cphy_0175 Clostridium phytofermentans ISDg myosin-cross-reactive antigen YP_001557301.1 220274 R 357809 CDS YP_001557302.1 160878334 5745044 complement(222247..222819) 1 NC_010001.1 PFAM: regulatory protein TetR; KEGG: cbf:CLI_2106 transcriptional regulator, TetR family; TetR family transcriptional regulator 222819 5745044 Cphy_0176 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001557302.1 222247 R 357809 CDS YP_001557303.1 160878335 5745045 223270..223944 1 NC_010001.1 PFAM: protein of unknown function UPF0153; KEGG: cte:CT0872 hypothetical protein; hypothetical protein 223944 5745045 Cphy_0177 Clostridium phytofermentans ISDg hypothetical protein YP_001557303.1 223270 D 357809 CDS YP_001557304.1 160878336 5745046 224031..224828 1 NC_010001.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cdf:CD1963 hypothetical protein; methyltransferase type 11 224828 5745046 Cphy_0178 Clostridium phytofermentans ISDg methyltransferase type 11 YP_001557304.1 224031 D 357809 CDS YP_001557305.1 160878337 5745047 225030..225293 1 NC_010001.1 PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: mla:Mlab_0303 hypothetical protein; ArsR family transcriptional regulator 225293 5745047 Cphy_0179 Clostridium phytofermentans ISDg ArsR family transcriptional regulator YP_001557305.1 225030 D 357809 CDS YP_001557306.1 160878338 5745048 225379..226032 1 NC_010001.1 PFAM: protein of unknown function DUF1648; KEGG: bcl:ABC3712 hypothetical protein; hypothetical protein 226032 5745048 Cphy_0180 Clostridium phytofermentans ISDg hypothetical protein YP_001557306.1 225379 D 357809 CDS YP_001557307.1 160878339 5745049 226406..227530 1 NC_010001.1 PFAM: aminotransferase class V; aminotransferase class I and II; KEGG: gtn:GTNG_2699 cysteine desulfhydrase; class V aminotransferase 227530 5745049 Cphy_0181 Clostridium phytofermentans ISDg class V aminotransferase YP_001557307.1 226406 D 357809 CDS YP_001557308.1 160878340 5745050 227708..228574 1 NC_010001.1 PFAM: PP-loop domain protein; KEGG: cbo:CBO0341 hypothetical protein; PP-loop domain-containing protein 228574 5745050 Cphy_0182 Clostridium phytofermentans ISDg PP-loop domain-containing protein YP_001557308.1 227708 D 357809 CDS YP_001557309.1 160878341 5745051 229100..229969 1 NC_010001.1 PFAM: Radical SAM domain protein; KEGG: mla:Mlab_0619 hypothetical protein; radical SAM domain-containing protein 229969 5745051 Cphy_0183 Clostridium phytofermentans ISDg radical SAM domain-containing protein YP_001557309.1 229100 D 357809 CDS YP_001557310.1 160878342 5745052 230082..230633 1 NC_010001.1 KEGG: cbe:Cbei_3897 hypothetical protein; hypothetical protein 230633 5745052 Cphy_0184 Clostridium phytofermentans ISDg hypothetical protein YP_001557310.1 230082 D 357809 CDS YP_001557311.1 160878343 5745053 230930..231298 1 NC_010001.1 PFAM: regulatory protein GntR HTH; KEGG: lre:Lreu_1332 regulatory protein GntR, HTH; GntR family transcriptional regulator 231298 5745053 Cphy_0185 Clostridium phytofermentans ISDg GntR family transcriptional regulator YP_001557311.1 230930 D 357809 CDS YP_001557312.1 160878344 5745054 231295..232161 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_1248 ABC transporter, ATP-binding protein; ABC transporter 232161 5745054 Cphy_0186 Clostridium phytofermentans ISDg ABC transporter YP_001557312.1 231295 D 357809 CDS YP_001557313.1 160878345 5745055 232161..232895 1 NC_010001.1 KEGG: cbh:CLC_1249 hypothetical protein; hypothetical protein 232895 5745055 Cphy_0187 Clostridium phytofermentans ISDg hypothetical protein YP_001557313.1 232161 D 357809 CDS YP_001557314.1 160878346 5745056 complement(232976..234154) 1 NC_010001.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cac:CAC3332 predicted amidohydrolase (dihydroorothase family); amidohydrolase 234154 5745056 Cphy_0188 Clostridium phytofermentans ISDg amidohydrolase YP_001557314.1 232976 R 357809 CDS YP_001557315.1 160878347 5745057 234483..234971 1 NC_010001.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cbe:Cbei_0409 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 234971 5745057 Cphy_0189 Clostridium phytofermentans ISDg zinc-binding CMP/dCMP deaminase YP_001557315.1 234483 D 357809 CDS YP_001557316.1 160878348 5745058 235186..236616 1 NC_010001.1 PFAM: beta-lactamase; KEGG: pdi:BDI_1500 beta-lactamase class C, 6-aminohexanoate-dimer hydrolase; beta-lactamase 236616 5745058 Cphy_0190 Clostridium phytofermentans ISDg beta-lactamase YP_001557316.1 235186 D 357809 CDS YP_001557317.1 160878349 5745059 236617..238155 1 NC_010001.1 PFAM: glycoside hydrolase family 43; KEGG: bld:BLi00864 xylan beta-1,4-xylosidase; RBL03427; glycoside hydrolase family protein 238155 5745059 Cphy_0191 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001557317.1 236617 D 357809 CDS YP_001557318.1 160878350 5745060 complement(238298..240091) 1 NC_010001.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: ppe:PEPE_1650 ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter 240091 5745060 Cphy_0192 Clostridium phytofermentans ISDg ABC transporter YP_001557318.1 238298 R 357809 CDS YP_001557319.1 160878351 5745061 complement(240094..242037) 1 NC_010001.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: cbe:Cbei_4728 ABC transporter related; ABC transporter 242037 5745061 Cphy_0193 Clostridium phytofermentans ISDg ABC transporter YP_001557319.1 240094 R 357809 CDS YP_001557320.1 160878352 5745062 complement(242049..242735) 1 NC_010001.1 hypothetical protein 242735 5745062 Cphy_0194 Clostridium phytofermentans ISDg hypothetical protein YP_001557320.1 242049 R 357809 CDS YP_001557321.1 160878353 5745063 complement(242919..244052) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: amt:Amet_4746 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 244052 5745063 Cphy_0195 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001557321.1 242919 R 357809 CDS YP_001557322.1 160878354 5745064 complement(244049..244729) 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:CTC01482 transcriptional activator protein; two component transcriptional regulator 244729 5745064 Cphy_0196 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001557322.1 244049 R 357809 CDS YP_001557323.1 160878355 5745065 244835..245491 1 NC_010001.1 hypothetical protein 245491 5745065 Cphy_0197 Clostridium phytofermentans ISDg hypothetical protein YP_001557323.1 244835 D 357809 CDS YP_001557324.1 160878356 5745066 245608..246474 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ctc:CTC01480 conserved protein, ferredoxin-type protein NapH; 4Fe-4S ferredoxin 246474 5745066 Cphy_0198 Clostridium phytofermentans ISDg 4Fe-4S ferredoxin YP_001557324.1 245608 D 357809 CDS YP_001557325.1 160878357 5745067 246458..246991 1 NC_010001.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ctc:CTC01479 hypothetical protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 246991 5745067 Cphy_0199 Clostridium phytofermentans ISDg alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_001557325.1 246458 D 357809 CDS YP_001557326.1 160878358 5745068 complement(247133..248617) 1 NC_010001.1 KEGG: cac:CAC2610 L-fucose isomerase related protein; L-fucose isomerase 248617 5745068 Cphy_0200 Clostridium phytofermentans ISDg L-fucose isomerase YP_001557326.1 247133 R 357809 CDS YP_001557327.1 160878359 5745069 249113..251323 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: csc:Csac_2452 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 251323 5745069 Cphy_0201 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001557327.1 249113 D 357809 CDS YP_001557328.1 160878360 5745070 251342..252022 1 NC_010001.1 PFAM: MgtC/SapB transporter; KEGG: cbe:Cbei_2642 MgtC/SapB transporter; MgtC/SapB transporter 252022 5745070 Cphy_0202 Clostridium phytofermentans ISDg MgtC/SapB transporter YP_001557328.1 251342 D 357809 CDS YP_001557329.1 160878361 5745071 252199..253326 1 NC_010001.1 PFAM: glycosyl hydrolase family 88; KEGG: amt:Amet_0895 glycosyl hydrolase, family 88; glycosyl hydrolase family protein 253326 5745071 Cphy_0203 Clostridium phytofermentans ISDg glycosyl hydrolase family protein YP_001557329.1 252199 D 357809 CDS YP_001557330.1 160878362 5745072 253676..254716 1 NC_010001.1 PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; KEGG: ssp:SSP1089 FKBP-type peptidyl-prolyl cis-trans isomerase; peptidylprolyl isomerase FKBP-type 254716 5745072 Cphy_0204 Clostridium phytofermentans ISDg peptidylprolyl isomerase FKBP-type YP_001557330.1 253676 D 357809 CDS YP_001557331.1 160878363 5745073 complement(254877..255548) 1 NC_010001.1 PFAM: manganese and iron superoxide dismutase; KEGG: cdf:CD1631 superoxide dismutase (Mn); superoxide dismutase 255548 5745073 Cphy_0205 Clostridium phytofermentans ISDg superoxide dismutase YP_001557331.1 254877 R 357809 CDS YP_001557332.1 160878364 5745074 255647..256024 1 NC_010001.1 PFAM: arsenate reductase and related; KEGG: ctc:CTC01181 arsenate reductase; arsenate reductase 256024 5745074 Cphy_0206 Clostridium phytofermentans ISDg arsenate reductase YP_001557332.1 255647 D 357809 CDS YP_001557333.1 160878365 5745075 256191..257048 1 NC_010001.1 KEGG: cdf:CD0306 hypothetical protein; hypothetical protein 257048 5745075 Cphy_0207 Clostridium phytofermentans ISDg hypothetical protein YP_001557333.1 256191 D 357809 CDS YP_001557334.1 160878366 5745076 257050..257670 1 NC_010001.1 PFAM: heat shock protein DnaJ domain protein; KEGG: cbf:CLI_0254 molecular chaperone, DnaJ family; molecular chaperone DnaJ 257670 5745076 Cphy_0208 Clostridium phytofermentans ISDg molecular chaperone DnaJ YP_001557334.1 257050 D 357809 CDS YP_001557335.1 160878367 5745077 257661..258230 1 NC_010001.1 KEGG: cdf:CD0308 hypothetical protein; hypothetical protein 258230 5745077 Cphy_0209 Clostridium phytofermentans ISDg hypothetical protein YP_001557335.1 257661 D 357809 CDS YP_001557336.1 160878368 5745078 258892..259182 1 NC_010001.1 TIGRFAM: sporulation transcriptional regulator SpoIIID; KEGG: cth:Cthe_2618 stage III sporulation protein D, SpoIIID; sporulation transcriptional regulator SpoIIID 259182 5745078 Cphy_0210 Clostridium phytofermentans ISDg sporulation transcriptional regulator SpoIIID YP_001557336.1 258892 D 357809 CDS YP_001557337.1 160878369 5745079 259945..261264 1 NC_010001.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: cbh:CLC_0426 electron transport complex, RnfABCDGE type, C subunit; RnfABCDGE type electron transport complex subunit C 261264 5745079 Cphy_0211 Clostridium phytofermentans ISDg RnfABCDGE type electron transport complex subunit C YP_001557337.1 259945 D 357809 CDS YP_001557338.1 160878370 5745080 261309..262319 1 NC_010001.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: ctc:CTC01020 RnfD/NqrB; RnfABCDGE type electron transport complex subunit D 262319 5745080 Cphy_0212 Clostridium phytofermentans ISDg RnfABCDGE type electron transport complex subunit D YP_001557338.1 261309 D 357809 CDS YP_001557339.1 160878371 5745081 262309..262965 1 NC_010001.1 PFAM: FMN-binding domain protein; KEGG: cdf:CD1139 electron transport complex protein; FMN-binding domain-containing protein 262965 5745081 Cphy_0213 Clostridium phytofermentans ISDg FMN-binding domain-containing protein YP_001557339.1 262309 D 357809 CDS YP_001557340.1 160878372 5745082 262958..263719 1 NC_010001.1 TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: ctc:CTC01022 rnfE/nqrD; RnfABCDGE type electron transport complex subunit E 263719 5745082 Cphy_0214 Clostridium phytofermentans ISDg RnfABCDGE type electron transport complex subunit E YP_001557340.1 262958 D 357809 CDS YP_001557341.1 160878373 5745083 263734..264309 1 NC_010001.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: fnu:FN1592 Na(+)-translocating NADH-quinone reductase subunit D; RnfABCDGE type electron transport complex subunit A 264309 5745083 Cphy_0215 Clostridium phytofermentans ISDg RnfABCDGE type electron transport complex subunit A YP_001557341.1 263734 D 357809 CDS YP_001557342.1 160878374 5745084 264327..265175 1 NC_010001.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: cno:NT01CX_1584 polyferredoxin; RnfABCDGE type electron transport complex subunit B 265175 5745084 Cphy_0216 Clostridium phytofermentans ISDg RnfABCDGE type electron transport complex subunit B YP_001557342.1 264327 D 357809 CDS YP_001557343.1 160878375 5745085 265478..266050 1 NC_010001.1 hypothetical protein 266050 5745085 Cphy_0217 Clostridium phytofermentans ISDg hypothetical protein YP_001557343.1 265478 D 357809 CDS YP_001557344.1 160878376 5745086 266504..268846 1 NC_010001.1 catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides; alpha-xylosidase 268846 5745086 Cphy_0218 Clostridium phytofermentans ISDg alpha-xylosidase YP_001557344.1 266504 D 357809 CDS YP_001557345.1 160878377 5745087 268918..269046 1 NC_010001.1 hypothetical protein 269046 5745087 Cphy_0219 Clostridium phytofermentans ISDg hypothetical protein YP_001557345.1 268918 D 357809 CDS YP_001557346.1 160878378 5745088 269141..271306 1 NC_010001.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: pdi:BDI_3104 glycoside hydrolase family 3, candidate beta-glycosidase; glycoside hydrolase family 3 271306 5745088 Cphy_0220 Clostridium phytofermentans ISDg glycoside hydrolase family 3 YP_001557346.1 269141 D 357809 CDS YP_001557347.1 160878379 5745089 271681..273153 1 NC_010001.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 273153 gltX 5745089 gltX Clostridium phytofermentans ISDg glutamyl-tRNA synthetase YP_001557347.1 271681 D 357809 CDS YP_001557348.1 160878380 5745090 273457..275457 1 NC_010001.1 PFAM: UvrD/REP helicase; KEGG: amt:Amet_2202 UvrD/REP helicase; UvrD/REP helicase 275457 5745090 Cphy_0222 Clostridium phytofermentans ISDg UvrD/REP helicase YP_001557348.1 273457 D 357809 CDS YP_001557349.1 160878381 5745091 complement(275696..276031) 1 NC_010001.1 PFAM: protein of unknown function DUF1292; KEGG: amt:Amet_0705 protein of unknown function DUF1292; hypothetical protein 276031 5745091 Cphy_0223 Clostridium phytofermentans ISDg hypothetical protein YP_001557349.1 275696 R 357809 CDS YP_001557350.1 160878382 5745092 276345..278903 1 NC_010001.1 PFAM: DEAD_2 domain protein; SMART: Helicase-like, DEXD box c2 type; helicase c2; KEGG: cth:Cthe_0289 DEAD_2; DEAD/DEAH box helicase 278903 5745092 Cphy_0224 Clostridium phytofermentans ISDg DEAD/DEAH box helicase YP_001557350.1 276345 D 357809 CDS YP_001557351.1 160878383 5745093 complement(279075..279992) 1 NC_010001.1 PFAM: diacylglycerol kinase catalytic region; KEGG: tva:TVAG_429710 conserved hypothetical protein Pfam: DAGK_cat DAGK_acc; diacylglycerol kinase catalytic subunit 279992 5745093 Cphy_0225 Clostridium phytofermentans ISDg diacylglycerol kinase catalytic subunit YP_001557351.1 279075 R 357809 CDS YP_001557352.1 160878384 5745094 280345..282126 1 NC_010001.1 PFAM: protein of unknown function DUF885; KEGG: slo:Shew_1130 protein of unknown function DUF885; hypothetical protein 282126 5745094 Cphy_0226 Clostridium phytofermentans ISDg hypothetical protein YP_001557352.1 280345 D 357809 CDS YP_001557353.1 160878385 5745095 complement(282192..283226) 1 NC_010001.1 PFAM: PfkB domain protein; KEGG: amt:Amet_1262 PfkB domain protein; ribokinase-like domain-containing protein 283226 5745095 Cphy_0227 Clostridium phytofermentans ISDg ribokinase-like domain-containing protein YP_001557353.1 282192 R 357809 CDS YP_001557354.1 160878386 5745096 283704..284357 1 NC_010001.1 KEGG: nar:Saro_1184 endo alpha-1,4 polygalactosaminidase; hypothetical protein 284357 5745096 Cphy_0228 Clostridium phytofermentans ISDg hypothetical protein YP_001557354.1 283704 D 357809 CDS YP_001557355.1 160878387 5745097 284607..285221 1 NC_010001.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: amt:Amet_3127 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 285221 5745097 Cphy_0229 Clostridium phytofermentans ISDg ECF subfamily RNA polymerase sigma-24 factor YP_001557355.1 284607 D 357809 CDS YP_001557356.1 160878388 5745098 285208..285843 1 NC_010001.1 hypothetical protein 285843 5745098 Cphy_0230 Clostridium phytofermentans ISDg hypothetical protein YP_001557356.1 285208 D 357809 CDS YP_001557357.1 160878389 5745099 285891..287309 1 NC_010001.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: cno:NT01CX_1336 alginate O-acetylation protein; membrane bound O-acyl transferase MBOAT family protein 287309 5745099 Cphy_0231 Clostridium phytofermentans ISDg membrane bound O-acyl transferase MBOAT family protein YP_001557357.1 285891 D 357809 CDS YP_001557358.1 160878390 5745100 287321..288520 1 NC_010001.1 KEGG: ctc:CTC00591 hypothetical protein; hypothetical protein 288520 5745100 Cphy_0232 Clostridium phytofermentans ISDg hypothetical protein YP_001557358.1 287321 D 357809 CDS YP_001557359.1 160878391 5745101 complement(288696..289409) 1 NC_010001.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: oih:OB0869 1-acyl-sn-glycerol-3-phosphate acetyltransferase; phospholipid/glycerol acyltransferase 289409 5745101 Cphy_0233 Clostridium phytofermentans ISDg phospholipid/glycerol acyltransferase YP_001557359.1 288696 R 357809 CDS YP_001557360.1 160878392 5745102 complement(289502..290617) 1 NC_010001.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: csc:Csac_0883 RNA polymerase, sigma 70 subunit, RpoD family; RpoD family RNA polymerase sigma factor 290617 5745102 Cphy_0234 Clostridium phytofermentans ISDg RpoD family RNA polymerase sigma factor YP_001557360.1 289502 R 357809 CDS YP_001557361.1 160878393 5745103 291402..291824 1 NC_010001.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 291824 rpsL 5745103 rpsL Clostridium phytofermentans ISDg 30S ribosomal protein S12 YP_001557361.1 291402 D 357809 CDS YP_001557362.1 160878394 5745104 292063..292533 1 NC_010001.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 292533 5745104 Cphy_0236 Clostridium phytofermentans ISDg 30S ribosomal protein S7 YP_001557362.1 292063 D 357809 CDS YP_001557363.1 160878395 5745105 292844..294961 1 NC_010001.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 294961 5745105 Cphy_0237 Clostridium phytofermentans ISDg elongation factor G YP_001557363.1 292844 D 357809 CDS YP_001557364.1 160878396 5745106 295200..296393 1 NC_010001.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 296393 5745106 Cphy_0238 Clostridium phytofermentans ISDg elongation factor Tu YP_001557364.1 295200 D 357809 CDS YP_001557365.1 160878397 5745107 296631..297458 1 NC_010001.1 hypothetical protein 297458 5745107 Cphy_0239 Clostridium phytofermentans ISDg hypothetical protein YP_001557365.1 296631 D 357809 CDS YP_001557366.1 160878398 5745108 297866..299836 1 NC_010001.1 PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cdf:CD1616 signaling protein; diguanylate cyclase/phosphodiesterase 299836 5745108 Cphy_0240 Clostridium phytofermentans ISDg diguanylate cyclase/phosphodiesterase YP_001557366.1 297866 D 357809 CDS YP_001557367.1 160878399 5745109 complement(299816..300436) 1 NC_010001.1 hypothetical protein 300436 5745109 Cphy_0241 Clostridium phytofermentans ISDg hypothetical protein YP_001557367.1 299816 R 357809 CDS YP_001557368.1 160878400 5745110 300818..301807 1 NC_010001.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; KEGG: cth:Cthe_2619 cell shape determining protein, MreB/Mrl family; rod shape-determining protein MreB 301807 5745110 Cphy_0242 Clostridium phytofermentans ISDg rod shape-determining protein MreB YP_001557368.1 300818 D 357809 CDS YP_001557369.1 160878401 5745111 301931..302704 1 NC_010001.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: pth:PTH_2067 flagellar hook protein FlgE; flagellar basal body rod protein 302704 5745111 Cphy_0243 Clostridium phytofermentans ISDg flagellar basal body rod protein YP_001557369.1 301931 D 357809 CDS YP_001557370.1 160878402 5745112 302817..303632 1 NC_010001.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_2621 protein of unknown function DUF1078-like protein; hypothetical protein 303632 5745112 Cphy_0244 Clostridium phytofermentans ISDg hypothetical protein YP_001557370.1 302817 D 357809 CDS YP_001557371.1 160878403 5745113 303737..304081 1 NC_010001.1 KEGG: cth:Cthe_2622 hypothetical protein; hypothetical protein 304081 5745113 Cphy_0245 Clostridium phytofermentans ISDg hypothetical protein YP_001557371.1 303737 D 357809 CDS YP_001557372.1 160878404 5745114 304326..306554 1 NC_010001.1 KEGG: amt:Amet_0722 helicase, RecD/TraA family; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase; recombinase D 306554 5745114 Cphy_0246 Clostridium phytofermentans ISDg recombinase D YP_001557372.1 304326 D 357809 CDS YP_001557373.1 160878405 5745115 306745..307665 1 NC_010001.1 KEGG: bfs:BF3922 hypothetical protein; hypothetical protein 307665 5745115 Cphy_0247 Clostridium phytofermentans ISDg hypothetical protein YP_001557373.1 306745 D 357809 CDS YP_001557374.1 160878406 5745116 307688..308425 1 NC_010001.1 KEGG: tte:TTE0490 predicted amidophosphoribosyltransferases; amidophosphoribosyltransferase 308425 5745116 Cphy_0248 Clostridium phytofermentans ISDg amidophosphoribosyltransferase YP_001557374.1 307688 D 357809 CDS YP_001557375.1 160878407 5745117 308496..308897 1 NC_010001.1 KEGG: cth:Cthe_2247 regulatory protein, MerR; hypothetical protein 308897 5745117 Cphy_0249 Clostridium phytofermentans ISDg hypothetical protein YP_001557375.1 308496 D 357809 CDS YP_001557376.1 160878408 5745118 complement(309186..310025) 1 NC_010001.1 PFAM: RNA binding S1 domain protein; KEGG: cbh:CLC_1722 RNA-binding protein; RNA-binding S1 domain-containing protein 310025 5745118 Cphy_0250 Clostridium phytofermentans ISDg RNA-binding S1 domain-containing protein YP_001557376.1 309186 R 357809 CDS YP_001557377.1 160878409 5745119 complement(310038..310751) 1 NC_010001.1 PFAM: acyl-ACP thioesterase; KEGG: cbf:CLI_3859 acyl-ACP thioesterase family protein; acyl-ACP thioesterase 310751 5745119 Cphy_0251 Clostridium phytofermentans ISDg acyl-ACP thioesterase YP_001557377.1 310038 R 357809 CDS YP_001557378.1 160878410 5745120 311051..312250 1 NC_010001.1 PFAM: Abortive infection protein; KEGG: amt:Amet_1623 abortive infection protein; abortive infection protein 312250 5745120 Cphy_0252 Clostridium phytofermentans ISDg abortive infection protein YP_001557378.1 311051 D 357809 CDS YP_001557379.1 160878411 5745121 complement(312240..312416) 1 NC_010001.1 KEGG: amt:Amet_0741 hypothetical protein; hypothetical protein 312416 5745121 Cphy_0253 Clostridium phytofermentans ISDg hypothetical protein YP_001557379.1 312240 R 357809 CDS YP_001557380.1 160878412 5744177 312520..313446 1 NC_010001.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; KEGG: tte:TTE2220 thioredoxin reductase; thioredoxin reductase 313446 5744177 Cphy_0254 Clostridium phytofermentans ISDg thioredoxin reductase YP_001557380.1 312520 D 357809 CDS YP_001557381.1 160878413 5744178 314508..315044 1 NC_010001.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: cac:CAC2847 ribosome-associated protein Y (PSrp-1); sigma 54 modulation protein/ribosomal protein S30EA 315044 5744178 Cphy_0255 Clostridium phytofermentans ISDg sigma 54 modulation protein/ribosomal protein S30EA YP_001557381.1 314508 D 357809 CDS YP_001557382.1 160878414 5744179 315431..318007 1 NC_010001.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: helicase domain protein; SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: csc:Csac_1325 preprotein translocase, SecA subunit; Preprotein translocase subunit SecA 318007 5744179 Cphy_0256 Clostridium phytofermentans ISDg Preprotein translocase subunit SecA YP_001557382.1 315431 D 357809 CDS YP_001557383.1 160878415 5744180 318278..319279 1 NC_010001.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: cth:Cthe_0365 peptide chain release factor 2; peptide chain release factor 2 319279 5744180 Cphy_0257 Clostridium phytofermentans ISDg peptide chain release factor 2 YP_001557383.1 318278 D 357809 CDS YP_001557384.1 160878416 5744181 319531..319989 1 NC_010001.1 PFAM: CheW domain protein; KEGG: maq:Maqu_1966 CheW protein; chemotaxis protein CheW 319989 5744181 Cphy_0258 Clostridium phytofermentans ISDg chemotaxis protein CheW YP_001557384.1 319531 D 357809 CDS YP_001557385.1 160878417 5744182 320208..322196 1 NC_010001.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 322196 5744182 Cphy_0259 Clostridium phytofermentans ISDg excinuclease ABC subunit B YP_001557385.1 320208 D 357809 CDS YP_001557386.1 160878418 5744183 322207..325050 1 NC_010001.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: cth:Cthe_0311 excinuclease ABC, A subunit; excinuclease ABC subunit A 325050 5744183 Cphy_0260 Clostridium phytofermentans ISDg excinuclease ABC subunit A YP_001557386.1 322207 D 357809 CDS YP_001557387.1 160878419 5744184 325091..325672 1 NC_010001.1 KEGG: ppd:Ppro_1070 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 325672 5744184 Cphy_0261 Clostridium phytofermentans ISDg metal dependent phosphohydrolase YP_001557387.1 325091 D 357809 CDS YP_001557388.1 160878420 5744185 complement(325777..326940) 1 NC_010001.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dps:DP1647 flavoprotein; beta-lactamase domain-containing protein 326940 5744185 Cphy_0262 Clostridium phytofermentans ISDg beta-lactamase domain-containing protein YP_001557388.1 325777 R 357809 CDS YP_001557389.1 160878421 5744186 327680..329335 1 NC_010001.1 PFAM: von Willebrand factor type A; KEGG: cth:Cthe_3075 von Willebrand factor, type A; von Willebrand factor type A 329335 5744186 Cphy_0263 Clostridium phytofermentans ISDg von Willebrand factor type A YP_001557389.1 327680 D 357809 CDS YP_001557390.1 160878422 5744187 329775..331298 1 NC_010001.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 331298 guaA 5744187 guaA Clostridium phytofermentans ISDg GMP synthase YP_001557390.1 329775 D 357809 CDS YP_001557391.1 160878423 5744188 332463..332927 1 NC_010001.1 KEGG: sbl:Sbal_2840 hypothetical protein; hypothetical protein 332927 5744188 Cphy_0265 Clostridium phytofermentans ISDg hypothetical protein YP_001557391.1 332463 D 357809 CDS YP_001557392.1 160878424 5744189 332911..333495 1 NC_010001.1 hypothetical protein 333495 5744189 Cphy_0266 Clostridium phytofermentans ISDg hypothetical protein YP_001557392.1 332911 D 357809 CDS YP_001557393.1 160878425 5744190 333780..335354 1 NC_010001.1 KEGG: fps:FP1566 probable modification methyltransferase; modification methyltransferase 335354 5744190 Cphy_0267 Clostridium phytofermentans ISDg modification methyltransferase YP_001557393.1 333780 D 357809 CDS YP_001557394.1 160878426 5744191 335347..337563 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; KEGG: pfo:Pfl_4625 histidine kinase; histidine kinase 337563 5744191 Cphy_0268 Clostridium phytofermentans ISDg histidine kinase YP_001557394.1 335347 D 357809 CDS YP_001557395.1 160878427 5744192 337553..338248 1 NC_010001.1 hypothetical protein 338248 5744192 Cphy_0269 Clostridium phytofermentans ISDg hypothetical protein YP_001557395.1 337553 D 357809 CDS YP_001557396.1 160878428 5744193 338241..339011 1 NC_010001.1 KEGG: pfo:Pfl_4627 HNH endonuclease; hypothetical protein 339011 5744193 Cphy_0270 Clostridium phytofermentans ISDg hypothetical protein YP_001557396.1 338241 D 357809 CDS YP_001557397.1 160878429 5744194 339345..339923 1 NC_010001.1 hypothetical protein 339923 5744194 Cphy_0271 Clostridium phytofermentans ISDg hypothetical protein YP_001557397.1 339345 D 357809 CDS YP_001557398.1 160878430 5744195 340147..340566 1 NC_010001.1 hypothetical protein 340566 5744195 Cphy_0272 Clostridium phytofermentans ISDg hypothetical protein YP_001557398.1 340147 D 357809 CDS YP_001557399.1 160878431 5744196 341024..341944 1 NC_010001.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dsy:DSY0147 hypothetical protein; filamentation induced by cAMP protein fic 341944 5744196 Cphy_0273 Clostridium phytofermentans ISDg filamentation induced by cAMP protein fic YP_001557399.1 341024 D 357809 CDS YP_001557400.1 160878432 5744197 342030..343130 1 NC_010001.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: amt:Amet_3776 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 343130 5744197 Cphy_0274 Clostridium phytofermentans ISDg S-adenosyl-methyltransferase MraW YP_001557400.1 342030 D 357809 CDS YP_001557401.1 160878433 5744198 343239..344069 1 NC_010001.1 PFAM: helix-turn-helix domain protein; KEGG: mla:Mlab_0650 hypothetical protein; XRE family transcriptional regulator 344069 5744198 Cphy_0275 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001557401.1 343239 D 357809 CDS YP_001557402.1 160878434 5744199 complement(344532..345398) 1 NC_010001.1 PFAM: regulatory protein MerR; KEGG: dsy:DSY1016 hypothetical protein; MerR family transcriptional regulator 345398 5744199 Cphy_0276 Clostridium phytofermentans ISDg MerR family transcriptional regulator YP_001557402.1 344532 R 357809 CDS YP_001557403.1 160878435 5744200 345854..346531 1 NC_010001.1 PFAM: protein of unknown function DUF1275; KEGG: lmo:lmo0450 hypothetical protein; hypothetical protein 346531 5744200 Cphy_0277 Clostridium phytofermentans ISDg hypothetical protein YP_001557403.1 345854 D 357809 CDS YP_001557404.1 160878436 5744201 346628..347287 1 NC_010001.1 KEGG: gur:Gura_2911 hypothetical protein; hypothetical protein 347287 5744201 Cphy_0278 Clostridium phytofermentans ISDg hypothetical protein YP_001557404.1 346628 D 357809 CDS YP_001557405.1 160878437 5744202 complement(347574..348416) 1 NC_010001.1 KEGG: cbe:Cbei_4038 hypothetical protein; hypothetical protein 348416 5744202 Cphy_0279 Clostridium phytofermentans ISDg hypothetical protein YP_001557405.1 347574 R 357809 CDS YP_001557406.1 160878438 5744203 complement(348483..349025) 1 NC_010001.1 KEGG: cac:CAC3435 hypothetical protein; hypothetical protein 349025 5744203 Cphy_0280 Clostridium phytofermentans ISDg hypothetical protein YP_001557406.1 348483 R 357809 CDS YP_001557407.1 160878439 5744204 349185..349946 1 NC_010001.1 PFAM: purine or other phosphorylase family 1; KEGG: sgo:SGO_0487 phosphorylase, Pnp/UDP family; purine phosphorylase family 1 349946 5744204 Cphy_0281 Clostridium phytofermentans ISDg purine phosphorylase family 1 YP_001557407.1 349185 D 357809 CDS YP_001557408.1 160878440 5744205 350094..351305 1 NC_010001.1 hypothetical protein 351305 5744205 Cphy_0282 Clostridium phytofermentans ISDg hypothetical protein YP_001557408.1 350094 D 357809 CDS YP_001557409.1 160878441 5744206 351565..352659 1 NC_010001.1 KEGG: mlo:mlr7467 hypothetical protein; hypothetical protein 352659 5744206 Cphy_0283 Clostridium phytofermentans ISDg hypothetical protein YP_001557409.1 351565 D 357809 CDS YP_001557410.1 160878442 5744207 complement(352773..353978) 1 NC_010001.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: ljo:LJ1010 trigger factor; FKBP-type peptidylprolyl isomerase 353978 5744207 Cphy_0284 Clostridium phytofermentans ISDg FKBP-type peptidylprolyl isomerase YP_001557410.1 352773 R 357809 CDS YP_001557411.1 160878443 5744208 354430..356565 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_4017 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 356565 5744208 Cphy_0285 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001557411.1 354430 D 357809 CDS YP_001557412.1 160878444 5744209 356849..357376 1 NC_010001.1 KEGG: ctc:CTC01413 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase 357376 5744209 Cphy_0286 Clostridium phytofermentans ISDg methylated-DNA--protein-cysteine methyltransferase YP_001557412.1 356849 D 357809 CDS YP_001557413.1 160878445 5744210 357478..358032 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: lsl:LSL_0634 phosphinothricin N-acetyltransferase; N-acetyltransferase GCN5 358032 5744210 Cphy_0287 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001557413.1 357478 D 357809 CDS YP_001557414.1 160878446 5744211 complement(358277..359431) 1 NC_010001.1 PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 unsaturated glucuronyl hydrolase; glycosyl hydrolase family protein 359431 5744211 Cphy_0288 Clostridium phytofermentans ISDg glycosyl hydrolase family protein YP_001557414.1 358277 R 357809 CDS YP_001557415.1 160878447 5744212 complement(359443..360273) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120663 permease component of ABC transporter; binding-protein-dependent transport system inner membrane protein 360273 5744212 Cphy_0289 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557415.1 359443 R 357809 CDS YP_001557416.1 160878448 5744213 complement(360288..361181) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2233 ABC transporter, permease; binding-protein-dependent transport systems inner membrane component 361181 5744213 Cphy_0290 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001557416.1 360288 R 357809 CDS YP_001557417.1 160878449 5744214 complement(361234..362583) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: rle:pRL120659 substrate-binding component of ABC transporter; extracellular solute-binding protein 362583 5744214 Cphy_0291 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001557417.1 361234 R 357809 CDS YP_001557418.1 160878450 5744215 362867..364387 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4458 histidine kinase internal region; signal transduction histidine kinase, LytS 364387 5744215 Cphy_0292 Clostridium phytofermentans ISDg signal transduction histidine kinase, LytS YP_001557418.1 362867 D 357809 CDS YP_001557419.1 160878451 5744216 364406..366004 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: tte:TTE0288 CheY-like receiver domains; two component AraC family transcriptional regulator 366004 5744216 Cphy_0293 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001557419.1 364406 D 357809 CDS YP_001557420.1 160878452 5744217 366262..366486 1 NC_010001.1 hypothetical protein 366486 5744217 Cphy_0294 Clostridium phytofermentans ISDg hypothetical protein YP_001557420.1 366262 D 357809 CDS YP_001557421.1 160878453 5744218 complement(366857..369103) 1 NC_010001.1 PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; KEGG: cno:NT01CX_0861 DNA gyrase, A subunit; DNA topoisomerase 369103 5744218 Cphy_0295 Clostridium phytofermentans ISDg DNA topoisomerase YP_001557421.1 366857 R 357809 CDS YP_001557422.1 160878454 5744219 complement(369348..371276) 1 NC_010001.1 KEGG: gka:GK0005 DNA gyrase subunit B; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA topoisomerase 371276 5744219 Cphy_0296 Clostridium phytofermentans ISDg DNA topoisomerase YP_001557422.1 369348 R 357809 CDS YP_001557423.1 160878455 5744220 371897..374809 1 NC_010001.1 PFAM: glycosyl transferase family 2; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: bld:BLi03816 hypothetical protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 374809 5744220 Cphy_0297 Clostridium phytofermentans ISDg CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_001557423.1 371897 D 357809 CDS YP_001557424.1 160878456 5744221 374809..375912 1 NC_010001.1 KEGG: amt:Amet_0211 hypothetical protein; hypothetical protein 375912 5744221 Cphy_0298 Clostridium phytofermentans ISDg hypothetical protein YP_001557424.1 374809 D 357809 CDS YP_001557425.1 160878457 5744222 375937..376965 1 NC_010001.1 PFAM: glycosyl transferase family 2; KEGG: lsa:LSA1519 teichoic acid/polysaccharide glycosyl transferase, family 2; glycosyl transferase family protein 376965 5744222 Cphy_0299 Clostridium phytofermentans ISDg glycosyl transferase family protein YP_001557425.1 375937 D 357809 CDS YP_001557426.1 160878458 5744223 377015..377401 1 NC_010001.1 KEGG: lin:lin1076 highly similar to glycerol-3-phosphate cytidylyltransferase (gct), CDP-glycerol pyrophosphorylase (teichoic acid biosynthesis protein D); TIGRFAM: cytidyltransferase-related domain protein; glycerol-3-phosphate cytidylyltransferase; PFAM: cytidylyltransferase; glycerol-3-phosphate cytidylyltransferase 377401 5744223 Cphy_0300 Clostridium phytofermentans ISDg glycerol-3-phosphate cytidylyltransferase YP_001557426.1 377015 D 357809 CDS YP_001557427.1 160878459 5744224 377579..378751 1 NC_010001.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: lmf:LMOf2365_1103 teichoic acid biosynthesis domain protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 378751 5744224 Cphy_0301 Clostridium phytofermentans ISDg CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_001557427.1 377579 D 357809 CDS YP_001557428.1 160878460 5744225 379217..380476 1 NC_010001.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: drm:Dred_3249 Orn/DAP/Arg decarboxylase 2; Orn/DAP/Arg decarboxylase 2 380476 5744225 Cphy_0302 Clostridium phytofermentans ISDg Orn/DAP/Arg decarboxylase 2 YP_001557428.1 379217 D 357809 CDS YP_001557429.1 160878461 5744226 381033..381305 1 NC_010001.1 PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: csc:Csac_1662 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM 381305 5744226 Cphy_0303 Clostridium phytofermentans ISDg anti-sigma-28 factor FlgM YP_001557429.1 381033 D 357809 CDS YP_001557430.1 160878462 5744227 381357..381872 1 NC_010001.1 KEGG: cth:Cthe_2245 hypothetical protein; hypothetical protein 381872 5744227 Cphy_0304 Clostridium phytofermentans ISDg hypothetical protein YP_001557430.1 381357 D 357809 CDS YP_001557431.1 160878463 5744228 381918..383780 1 NC_010001.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_2244 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 383780 5744228 Cphy_0305 Clostridium phytofermentans ISDg flagellar hook-associated protein FlgK YP_001557431.1 381918 D 357809 CDS YP_001557432.1 160878464 5744229 383872..385713 1 NC_010001.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: amt:Amet_0727 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 385713 5744229 Cphy_0306 Clostridium phytofermentans ISDg flagellar hook-associated protein FlgK YP_001557432.1 383872 D 357809 CDS YP_001557433.1 160878465 5744230 385771..387315 1 NC_010001.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: csc:Csac_1665 flagellar hook-associated protein 3; flagellar hook-associated protein 3 387315 5744230 Cphy_0307 Clostridium phytofermentans ISDg flagellar hook-associated protein 3 YP_001557433.1 385771 D 357809 CDS YP_001557434.1 160878466 5744231 387427..387897 1 NC_010001.1 PFAM: protein of unknown function DUF180; KEGG: cth:Cthe_2240 protein of unknown function DUF180; hypothetical protein 387897 5744231 Cphy_0308 Clostridium phytofermentans ISDg hypothetical protein YP_001557434.1 387427 D 357809 CDS YP_001557435.1 160878467 5744232 387891..388109 1 NC_010001.1 PFAM: carbon storage regulator; KEGG: lbl:LBL_0100 carbon storage regulator protein A; carbon storage regulator CsrA 388109 5744232 Cphy_0309 Clostridium phytofermentans ISDg carbon storage regulator CsrA YP_001557435.1 387891 D 357809 CDS YP_001557436.1 160878468 5744233 388399..388887 1 NC_010001.1 hypothetical protein 388887 5744233 Cphy_0310 Clostridium phytofermentans ISDg hypothetical protein YP_001557436.1 388399 D 357809 CDS YP_001557437.1 160878469 5744234 389103..389477 1 NC_010001.1 PFAM: flagellar protein FlaG protein; KEGG: csc:Csac_1698 flagellar protein FlaG protein; flagellar protein FlaG protein 389477 5744234 Cphy_0311 Clostridium phytofermentans ISDg flagellar protein FlaG protein YP_001557437.1 389103 D 357809 CDS YP_001557438.1 160878470 5744235 389492..391567 1 NC_010001.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: drm:Dred_2418 flagellar hook-associated 2 domain protein; flagellar hook-associated 2 domain-containing protein 391567 5744235 Cphy_0312 Clostridium phytofermentans ISDg flagellar hook-associated 2 domain-containing protein YP_001557438.1 389492 D 357809 CDS YP_001557439.1 160878471 5744236 391596..391976 1 NC_010001.1 PFAM: flagellar protein FliS; KEGG: cth:Cthe_2217 flagellar protein FliS; flagellar protein FliS 391976 5744236 Cphy_0313 Clostridium phytofermentans ISDg flagellar protein FliS YP_001557439.1 391596 D 357809 CDS YP_001557440.1 160878472 5744237 392121..392591 1 NC_010001.1 KEGG: cth:Cthe_2216 hypothetical protein; hypothetical protein 392591 5744237 Cphy_0314 Clostridium phytofermentans ISDg hypothetical protein YP_001557440.1 392121 D 357809 CDS YP_001557441.1 160878473 5744238 392760..393596 1 NC_010001.1 PFAM: flagellin domain protein; KEGG: cbh:CLC_2604 flagellin; flagellin domain-containing protein 393596 5744238 Cphy_0315 Clostridium phytofermentans ISDg flagellin domain-containing protein YP_001557441.1 392760 D 357809 CDS YP_001557442.1 160878474 5744239 393775..394935 1 NC_010001.1 KEGG: cbe:Cbei_2712 FliB family protein; FliB family protein 394935 5744239 Cphy_0316 Clostridium phytofermentans ISDg FliB family protein YP_001557442.1 393775 D 357809 CDS YP_001557443.1 160878475 5744240 395189..396976 1 NC_010001.1 hypothetical protein 396976 5744240 Cphy_0317 Clostridium phytofermentans ISDg hypothetical protein YP_001557443.1 395189 D 357809 CDS YP_001557444.1 160878476 5744241 397096..398499 1 NC_010001.1 KEGG: sfu:Sfum_0268 amidophosphoribosyltransferase; amidophosphoribosyltransferase 398499 5744241 Cphy_0318 Clostridium phytofermentans ISDg amidophosphoribosyltransferase YP_001557444.1 397096 D 357809 CDS YP_001557445.1 160878477 5744242 398539..399117 1 NC_010001.1 PFAM: glycerol-3-phosphate responsive antiterminator; KEGG: spe:Spro_2465 glycerol-3-phosphate responsive antiterminator, GlpP; glycerol-3-phosphate responsive antiterminator GlpP 399117 5744242 Cphy_0319 Clostridium phytofermentans ISDg glycerol-3-phosphate responsive antiterminator GlpP YP_001557445.1 398539 D 357809 CDS YP_001557446.1 160878478 5744243 399661..401118 1 NC_010001.1 PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ctc:CTC02436 glycerol-3-phosphate dehydrogenase; FAD dependent oxidoreductase 401118 5744243 Cphy_0320 Clostridium phytofermentans ISDg FAD dependent oxidoreductase YP_001557446.1 399661 D 357809 CDS YP_001557447.1 160878479 5744244 401119..402381 1 NC_010001.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC02435 sarcosine oxidase alpha subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 402381 5744244 Cphy_0321 Clostridium phytofermentans ISDg FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001557447.1 401119 D 357809 CDS YP_001557448.1 160878480 5744245 402394..402762 1 NC_010001.1 PFAM: protein of unknown function DUF1667; KEGG: ctc:CTC02434 hypothetical protein; hypothetical protein 402762 5744245 Cphy_0322 Clostridium phytofermentans ISDg hypothetical protein YP_001557448.1 402394 D 357809 CDS YP_001557449.1 160878481 5744246 402853..403878 1 NC_010001.1 PFAM: glycosyl transferase family 2; KEGG: cdf:CD3350 glycosyl transferase; glycosyl transferase family protein 403878 5744246 Cphy_0323 Clostridium phytofermentans ISDg glycosyl transferase family protein YP_001557449.1 402853 D 357809 CDS YP_001557450.1 160878482 5744247 404066..404515 1 NC_010001.1 PFAM: peptidase A8 signal peptidase II; KEGG: chy:CHY_1506 signal peptidase II; peptidase A8 signal peptidase II 404515 5744247 Cphy_0324 Clostridium phytofermentans ISDg peptidase A8 signal peptidase II YP_001557450.1 404066 D 357809 CDS YP_001557451.1 160878483 5744248 complement(404694..406298) 1 NC_010001.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 406298 pyrG 5744248 pyrG Clostridium phytofermentans ISDg CTP synthetase YP_001557451.1 404694 R 357809 CDS YP_001557452.1 160878484 5744249 406898..408943 1 NC_010001.1 KEGG: cbe:Cbei_3037 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 408943 5744249 Cphy_0326 Clostridium phytofermentans ISDg ATP-dependent metalloprotease FtsH YP_001557452.1 406898 D 357809 CDS YP_001557453.1 160878485 5744250 409162..411048 1 NC_010001.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 411048 uvrC 5744250 uvrC Clostridium phytofermentans ISDg excinuclease ABC subunit C YP_001557453.1 409162 D 357809 CDS YP_001557454.1 160878486 5742174 411257..412186 1 NC_010001.1 TIGRFAM: HPr(Ser) kinase/phosphatase; PFAM: HPr serine kinase domain protein; KEGG: cth:Cthe_0110 HPr kinase; HPr kinase 412186 5742174 Cphy_0328 Clostridium phytofermentans ISDg HPr kinase YP_001557454.1 411257 D 357809 CDS YP_001557455.1 160878487 5742175 412380..413318 1 NC_010001.1 TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; ATPase BadF/BadG/BcrA/BcrD type; KEGG: cac:CAC2613 transcriptional regulators of NagC/XylR family; ROK family glucokinase 413318 5742175 Cphy_0329 Clostridium phytofermentans ISDg ROK family glucokinase YP_001557455.1 412380 D 357809 CDS YP_001557456.1 160878488 5742176 413478..414410 1 NC_010001.1 KEGG: tte:TTE1836 UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 414410 5742176 Cphy_0330 Clostridium phytofermentans ISDg UDP-N-acetylenolpyruvoylglucosamine reductase YP_001557456.1 413478 D 357809 CDS YP_001557457.1 160878489 5742177 414428..415309 1 NC_010001.1 PFAM: conserved hypothetical protein; KEGG: cac:CAC0511 predicted P-loop containing kinase, similar to B.subtilis YvcJ; hypothetical protein 415309 5742177 Cphy_0331 Clostridium phytofermentans ISDg hypothetical protein YP_001557457.1 414428 D 357809 CDS YP_001557458.1 160878490 5742178 415316..416257 1 NC_010001.1 PFAM: protein of unknown function DUF199; KEGG: tte:TTE1821 hypothetical protein; hypothetical protein 416257 5742178 Cphy_0332 Clostridium phytofermentans ISDg hypothetical protein YP_001557458.1 415316 D 357809 CDS YP_001557459.1 160878491 5742179 416274..416531 1 NC_010001.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: oih:OB2465 catabolite repression HPr-like protein; phosphotransferase system, phosphocarrier protein HPr 416531 5742179 Cphy_0333 Clostridium phytofermentans ISDg phosphotransferase system, phosphocarrier protein HPr YP_001557459.1 416274 D 357809 CDS YP_001557460.1 160878492 5742180 416855..418246 1 NC_010001.1 KEGG: sha:SH0302 hypothetical protein; hypothetical protein 418246 5742180 Cphy_0334 Clostridium phytofermentans ISDg hypothetical protein YP_001557460.1 416855 D 357809 CDS YP_001557461.1 160878493 5742181 418448..422008 1 NC_010001.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE 422008 dnaE 5742181 dnaE Clostridium phytofermentans ISDg DNA polymerase III DnaE YP_001557461.1 418448 D 357809 CDS YP_001557462.1 160878494 5742182 422399..423424 1 NC_010001.1 KEGG: csc:Csac_1830 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase; 6-phosphofructokinase 423424 5742182 Cphy_0336 Clostridium phytofermentans ISDg 6-phosphofructokinase YP_001557462.1 422399 D 357809 CDS YP_001557463.1 160878495 5742183 423685..425433 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC01811 multidrug resistance ABC transporter ATP-binding and permease; ABC transporter 425433 5742183 Cphy_0337 Clostridium phytofermentans ISDg ABC transporter YP_001557463.1 423685 D 357809 CDS YP_001557464.1 160878496 5742184 425701..427869 1 NC_010001.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: mmp:MMP1127 RNA binding S1; RNA-binding S1 domain-containing protein 427869 5742184 Cphy_0338 Clostridium phytofermentans ISDg RNA-binding S1 domain-containing protein YP_001557464.1 425701 D 357809 CDS YP_001557465.1 160878497 5742185 428277..429278 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi01385 transmembrane lipoprotein; RBL02385; binding-protein-dependent transport system inner membrane protein 429278 5742185 Cphy_0339 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557465.1 428277 D 357809 CDS YP_001557466.1 160878498 5742186 429392..430300 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi01386 transmembrane lipoprotein; RBL02384; binding-protein-dependent transport systems inner membrane component 430300 5742186 Cphy_0340 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001557466.1 429392 D 357809 CDS YP_001557467.1 160878499 5742187 430405..432018 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: bld:BLi01384 lipoprotein; RBL02387; extracellular solute-binding protein 432018 5742187 Cphy_0341 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001557467.1 430405 D 357809 CDS YP_001557468.1 160878500 5742188 432371..434707 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH0483 transcriptional regulator (AraC/XylS family); AraC family transcriptional regulator 434707 5742188 Cphy_0342 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001557468.1 432371 D 357809 CDS YP_001557469.1 160878501 5742189 434803..437214 1 NC_010001.1 PFAM: FG-GAP repeat protein; KEGG: bha:BH1114 hypothetical protein; FG-GAP repeat-containing protein 437214 5742189 Cphy_0343 Clostridium phytofermentans ISDg FG-GAP repeat-containing protein YP_001557469.1 434803 D 357809 CDS YP_001557470.1 160878502 5742190 437841..438587 1 NC_010001.1 KEGG: cno:NT01CX_0505 hypothetical protein; membrane protein-like protein 438587 5742190 Cphy_0344 Clostridium phytofermentans ISDg membrane protein-like protein YP_001557470.1 437841 D 357809 CDS YP_001557471.1 160878503 5742191 438772..439278 1 NC_010001.1 KEGG: bsu:BG10173 unknown; hypothetical protein 439278 5742191 Cphy_0345 Clostridium phytofermentans ISDg hypothetical protein YP_001557471.1 438772 D 357809 CDS YP_001557472.1 160878504 5742192 439293..439724 1 NC_010001.1 PFAM: protein of unknown function UPF0079; KEGG: cth:Cthe_1776 protein of unknown function UPF0079; hypothetical protein 439724 5742192 Cphy_0346 Clostridium phytofermentans ISDg hypothetical protein YP_001557472.1 439293 D 357809 CDS YP_001557473.1 160878505 5742193 439847..440572 1 NC_010001.1 PFAM: peptidase M22 glycoprotease; KEGG: cth:Cthe_1775 peptidase M22, glycoprotease; peptidase M22 glycoprotease 440572 5742193 Cphy_0347 Clostridium phytofermentans ISDg peptidase M22 glycoprotease YP_001557473.1 439847 D 357809 CDS YP_001557474.1 160878506 5742194 440559..440993 1 NC_010001.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: csc:Csac_0216 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 440993 5742194 Cphy_0348 Clostridium phytofermentans ISDg ribosomal-protein-alanine acetyltransferase YP_001557474.1 440559 D 357809 CDS YP_001557475.1 160878507 5742195 441107..441349 1 NC_010001.1 hypothetical protein 441349 5742195 Cphy_0349 Clostridium phytofermentans ISDg hypothetical protein YP_001557475.1 441107 D 357809 CDS YP_001557476.1 160878508 5742196 441620..442534 1 NC_010001.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 442534 5742196 Cphy_0350 Clostridium phytofermentans ISDg ribonuclease Z YP_001557476.1 441620 D 357809 CDS YP_001557477.1 160878509 5742197 442647..443312 1 NC_010001.1 hypothetical protein 443312 5742197 Cphy_0351 Clostridium phytofermentans ISDg hypothetical protein YP_001557477.1 442647 D 357809 CDS YP_001557478.1 160878510 5742198 443491..444552 1 NC_010001.1 KEGG: cno:NT01CX_0478 metalloendopeptidase, , glycoprotease family; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase 444552 5742198 Cphy_0352 Clostridium phytofermentans ISDg glycoprotease family metalloendopeptidase YP_001557478.1 443491 D 357809 CDS YP_001557479.1 160878511 5742199 444624..445325 1 NC_010001.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: cno:NT01CX_1092 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 445325 5742199 Cphy_0353 Clostridium phytofermentans ISDg 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001557479.1 444624 D 357809 CDS YP_001557480.1 160878512 5742214 452927..453502 1 NC_010001.1 KEGG: ddi:DDBDRAFT_0169480 hypothetical protein; hypothetical protein 453502 5742214 Cphy_0354 Clostridium phytofermentans ISDg hypothetical protein YP_001557480.1 452927 D 357809 CDS YP_001557481.1 160878513 5742215 complement(453674..454273) 1 NC_010001.1 PFAM: protein of unknown function DUF340 membrane; KEGG: cbf:CLI_1203 hypothetical protein; hypothetical protein 454273 5742215 Cphy_0355 Clostridium phytofermentans ISDg hypothetical protein YP_001557481.1 453674 R 357809 CDS YP_001557482.1 160878514 5742216 complement(454276..454560) 1 NC_010001.1 hypothetical protein 454560 5742216 Cphy_0356 Clostridium phytofermentans ISDg hypothetical protein YP_001557482.1 454276 R 357809 CDS YP_001557483.1 160878515 5742217 455633..457405 1 NC_010001.1 KEGG: tte:TTE2422 hypothetical protein; hypothetical protein 457405 5742217 Cphy_0357 Clostridium phytofermentans ISDg hypothetical protein YP_001557483.1 455633 D 357809 CDS YP_001557484.1 160878516 5742218 457661..458350 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpf:CPF_1192 DNA-binding response regulator; two component transcriptional regulator 458350 5742218 Cphy_0358 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001557484.1 457661 D 357809 CDS YP_001557485.1 160878517 5742219 458494..459414 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3668 ABC transporter related; ABC transporter 459414 5742219 Cphy_0359 Clostridium phytofermentans ISDg ABC transporter YP_001557485.1 458494 D 357809 CDS YP_001557486.1 160878518 5742220 459407..460231 1 NC_010001.1 KEGG: cac:CAC2733 uncharacterized conserved membrane protein; hypothetical protein 460231 5742220 Cphy_0360 Clostridium phytofermentans ISDg hypothetical protein YP_001557486.1 459407 D 357809 CDS YP_001557487.1 160878519 5742221 460345..461238 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cbf:CLI_0866 sensor histidine kinase; histidine kinase 461238 5742221 Cphy_0361 Clostridium phytofermentans ISDg histidine kinase YP_001557487.1 460345 D 357809 CDS YP_001557488.1 160878520 5742222 complement(461569..463122) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BG12964 ABC transport system ATP-binding protein; ABC transporter 463122 5742222 Cphy_0362 Clostridium phytofermentans ISDg ABC transporter YP_001557488.1 461569 R 357809 CDS YP_001557489.1 160878521 5742223 463437..463946 1 NC_010001.1 hypothetical protein 463946 5742223 Cphy_0363 Clostridium phytofermentans ISDg hypothetical protein YP_001557489.1 463437 D 357809 CDS YP_001557490.1 160878522 5742224 complement(464091..464651) 1 NC_010001.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: ypi:YpsIP31758_3467 gpr1/fun34/YaaH family protein; GPR1/FUN34/yaaH family protein 464651 5742224 Cphy_0364 Clostridium phytofermentans ISDg GPR1/FUN34/yaaH family protein YP_001557490.1 464091 R 357809 CDS YP_001557491.1 160878523 5742225 465733..466035 1 NC_010001.1 PFAM: Rhodanese domain protein; KEGG: tde:TDE0839 rhodanese-like domain protein; rhodanese domain-containing protein 466035 5742225 Cphy_0365 Clostridium phytofermentans ISDg rhodanese domain-containing protein YP_001557491.1 465733 D 357809 CDS YP_001557492.1 160878524 5742226 466188..467330 1 NC_010001.1 PFAM: RNA methylase; KEGG: cno:NT01CX_2091 nucleic acid methylase; RNA methylase 467330 5742226 Cphy_0366 Clostridium phytofermentans ISDg RNA methylase YP_001557492.1 466188 D 357809 CDS YP_001557493.1 160878525 5742227 complement(467424..468344) 1 NC_010001.1 PFAM: alpha/beta hydrolase fold; KEGG: tde:TDE2146 hydrolase, alpha/beta fold family; alpha/beta hydrolase 468344 5742227 Cphy_0367 Clostridium phytofermentans ISDg alpha/beta hydrolase YP_001557493.1 467424 R 357809 CDS YP_001557494.1 160878526 5742228 468619..470043 1 NC_010001.1 PFAM: cell wall hydrolase/autolysin; KEGG: csc:Csac_1532 cell wall hydrolase/autolysin; cell wall hydrolase/autolysin 470043 5742228 Cphy_0368 Clostridium phytofermentans ISDg cell wall hydrolase/autolysin YP_001557494.1 468619 D 357809 CDS YP_001557495.1 160878527 5742229 470342..470923 1 NC_010001.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: cth:Cthe_0189 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 470923 5742229 Cphy_0369 Clostridium phytofermentans ISDg RdgB/HAM1 family non-canonical purine NTP pyrophosphatase YP_001557495.1 470342 D 357809 CDS YP_001557496.1 160878528 5742230 470940..471434 1 NC_010001.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: tte:TTE0621 predicted phosphoesterase; phosphodiesterase 471434 5742230 Cphy_0370 Clostridium phytofermentans ISDg phosphodiesterase YP_001557496.1 470940 D 357809 CDS YP_001557497.1 160878529 5742239 472717..473262 1 NC_010001.1 TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: bld:BLi00848 intracellular protease/amidase, ThiJ family; RBL01553; DJ-1 family protein 473262 5742239 Cphy_0371 Clostridium phytofermentans ISDg DJ-1 family protein YP_001557497.1 472717 D 357809 CDS YP_001557498.1 160878530 5742240 473354..474736 1 NC_010001.1 hypothetical protein 474736 5742240 Cphy_0372 Clostridium phytofermentans ISDg hypothetical protein YP_001557498.1 473354 D 357809 CDS YP_001557499.1 160878531 5742241 complement(474739..476121) 1 NC_010001.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: dsy:DSY4985 hypothetical protein; amino acid carrier protein 476121 5742241 Cphy_0373 Clostridium phytofermentans ISDg amino acid carrier protein YP_001557499.1 474739 R 357809 CDS YP_001557500.1 160878532 5742242 476696..476917 1 NC_010001.1 PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cbf:CLI_2367 small, acid-soluble spore protein; small acid-soluble spore protein alpha/beta type 476917 5742242 Cphy_0374 Clostridium phytofermentans ISDg small acid-soluble spore protein alpha/beta type YP_001557500.1 476696 D 357809 CDS YP_001557501.1 160878533 5742243 477102..478448 1 NC_010001.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: bcy:Bcer98_0150 phosphoglucosamine mutase; phosphoglucosamine mutase 478448 5742243 Cphy_0375 Clostridium phytofermentans ISDg phosphoglucosamine mutase YP_001557501.1 477102 D 357809 CDS YP_001557502.1 160878534 5742244 478875..480161 1 NC_010001.1 TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; trigger factor domain; KEGG: cth:Cthe_2739 trigger factor; trigger factor 480161 5742244 Cphy_0376 Clostridium phytofermentans ISDg trigger factor YP_001557502.1 478875 D 357809 CDS YP_001557503.1 160878535 5742245 480272..480853 1 NC_010001.1 KEGG: cbf:CLI_3370 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP 480853 5742245 Cphy_0377 Clostridium phytofermentans ISDg ATP-dependent Clp protease, proteolytic subunit ClpP YP_001557503.1 480272 D 357809 CDS YP_001557504.1 160878536 5742246 480918..482219 1 NC_010001.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 482219 clpX 5742246 clpX Clostridium phytofermentans ISDg ATP-dependent protease ATP-binding subunit ClpX YP_001557504.1 480918 D 357809 CDS YP_001557505.1 160878537 5742247 482373..484802 1 NC_010001.1 KEGG: amt:Amet_1072 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 484802 5742247 Cphy_0379 Clostridium phytofermentans ISDg ATP-dependent protease La YP_001557505.1 482373 D 357809 CDS YP_001557506.1 160878538 5742248 485065..485670 1 NC_010001.1 PFAM: GTP-binding protein HSR1-related; KEGG: cdf:CD3300 probable GTP-binding protein; GTP-binding protein HSR1-related 485670 5742248 Cphy_0380 Clostridium phytofermentans ISDg GTP-binding protein HSR1-related YP_001557506.1 485065 D 357809 CDS YP_001557507.1 160878539 5742249 486104..487459 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pfu:PF0824 hypothetical protein; MATE efflux family protein 487459 5742249 Cphy_0381 Clostridium phytofermentans ISDg MATE efflux family protein YP_001557507.1 486104 D 357809 CDS YP_001557508.1 160878540 5742250 488237..489733 1 NC_010001.1 PFAM: chemotaxis sensory transducer; KEGG: cbh:CLC_0609 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 489733 5742250 Cphy_0382 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001557508.1 488237 D 357809 CDS YP_001557509.1 160878541 5742251 complement(489955..490506) 1 NC_010001.1 hypothetical protein 490506 5742251 Cphy_0383 Clostridium phytofermentans ISDg hypothetical protein YP_001557509.1 489955 R 357809 CDS YP_001557510.1 160878542 5742252 complement(490581..491561) 1 NC_010001.1 PFAM: protein of unknown function DUF939; KEGG: cbh:CLC_1112 hypothetical protein; hypothetical protein 491561 5742252 Cphy_0384 Clostridium phytofermentans ISDg hypothetical protein YP_001557510.1 490581 R 357809 CDS YP_001557511.1 160878543 5742253 491883..494183 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bcl:ABC1143 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 494183 5742253 Cphy_0385 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001557511.1 491883 D 357809 CDS YP_001557512.1 160878544 5742254 494649..497018 1 NC_010001.1 hypothetical protein 497018 5742254 Cphy_0386 Clostridium phytofermentans ISDg hypothetical protein YP_001557512.1 494649 D 357809 CDS YP_001557513.1 160878545 5742255 497116..498111 1 NC_010001.1 KEGG: ckl:CKL_0518 hypothetical protein; hypothetical protein 498111 5742255 Cphy_0387 Clostridium phytofermentans ISDg hypothetical protein YP_001557513.1 497116 D 357809 CDS YP_001557514.1 160878546 5742256 complement(498254..499144) 1 NC_010001.1 PFAM: oxidoreductase domain protein; KEGG: bth:BT_3586 dehydrogenase; oxidoreductase domain-containing protein 499144 5742256 Cphy_0388 Clostridium phytofermentans ISDg oxidoreductase domain-containing protein YP_001557514.1 498254 R 357809 CDS YP_001557515.1 160878547 5742257 complement(499306..500217) 1 NC_010001.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: fjo:Fjoh_4335 protein of unknown function DUF6, transmembrane; hypothetical protein 500217 5742257 Cphy_0389 Clostridium phytofermentans ISDg hypothetical protein YP_001557515.1 499306 R 357809 CDS YP_001557516.1 160878548 5742258 complement(500301..501620) 1 NC_010001.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: cno:NT01CX_1200 amidohydrolase; amidohydrolase 501620 5742258 Cphy_0390 Clostridium phytofermentans ISDg amidohydrolase YP_001557516.1 500301 R 357809 CDS YP_001557517.1 160878549 5742259 complement(501779..502831) 1 NC_010001.1 KEGG: rba:RB7999 hypothetical protein; hypothetical protein 502831 5742259 Cphy_0391 Clostridium phytofermentans ISDg hypothetical protein YP_001557517.1 501779 R 357809 CDS YP_001557518.1 160878550 5742260 complement(502831..503847) 1 NC_010001.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: rba:RB7998 hypothetical protein; NAD-dependent epimerase/dehydratase 503847 5742260 Cphy_0392 Clostridium phytofermentans ISDg NAD-dependent epimerase/dehydratase YP_001557518.1 502831 R 357809 CDS YP_001557519.1 160878551 5742261 504230..505210 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3119 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein 505210 5742261 Cphy_0393 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557519.1 504230 D 357809 CDS YP_001557520.1 160878552 5742262 505226..506137 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3118 sugar ABC transporter permease; binding-protein-dependent transport systems inner membrane component 506137 5742262 Cphy_0394 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001557520.1 505226 D 357809 CDS YP_001557521.1 160878553 5742263 506211..507890 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC0358 multiple sugar transport system substrate-binding protein; extracellular solute-binding protein 507890 5742263 Cphy_0395 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001557521.1 506211 D 357809 CDS YP_001557522.1 160878554 5742264 507971..509302 1 NC_010001.1 hypothetical protein 509302 5742264 Cphy_0396 Clostridium phytofermentans ISDg hypothetical protein YP_001557522.1 507971 D 357809 CDS YP_001557523.1 160878555 5742265 509392..510393 1 NC_010001.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sco:SCO0663 2-hydroxyacid-family dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 510393 5742265 Cphy_0397 Clostridium phytofermentans ISDg D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit YP_001557523.1 509392 D 357809 CDS YP_001557524.1 160878556 5742266 510532..511797 1 NC_010001.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bca:BCE_1902 oxidoreductase family protein; oxidoreductase domain-containing protein 511797 5742266 Cphy_0398 Clostridium phytofermentans ISDg oxidoreductase domain-containing protein YP_001557524.1 510532 D 357809 CDS YP_001557525.1 160878557 5742267 511866..513032 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cpf:CPF_1025 acetyltransferase, GNAT family; N-acetyltransferase GCN5 513032 5742267 Cphy_0399 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001557525.1 511866 D 357809 CDS YP_001557526.1 160878558 5742268 513123..513443 1 NC_010001.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: lip:LI0589 sec-independent protein secretion pathway components; sec-independent translocation protein mttA/Hcf106 513443 5742268 Cphy_0400 Clostridium phytofermentans ISDg sec-independent translocation protein mttA/Hcf106 YP_001557526.1 513123 D 357809 CDS YP_001557527.1 160878559 5742269 513617..513796 1 NC_010001.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pth:PTH_1709 sec-independent protein secretion pathway components; sec-independent translocation protein mttA/Hcf106 513796 5742269 Cphy_0401 Clostridium phytofermentans ISDg sec-independent translocation protein mttA/Hcf106 YP_001557527.1 513617 D 357809 CDS YP_001557528.1 160878560 5742270 513786..514592 1 NC_010001.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: chy:CHY_0863 sec-independent protein translocase TatC; Sec-independent protein translocase subunit TatC 514592 5742270 Cphy_0402 Clostridium phytofermentans ISDg Sec-independent protein translocase subunit TatC YP_001557528.1 513786 D 357809 CDS YP_001557529.1 160878561 5742271 514812..515024 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cth:Cthe_2979 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 515024 5742271 Cphy_0403 Clostridium phytofermentans ISDg 4Fe-4S ferredoxin YP_001557529.1 514812 D 357809 CDS YP_001557530.1 160878562 5742272 515021..515602 1 NC_010001.1 KEGG: cdf:CD0628 hypothetical protein; hypothetical protein 515602 5742272 Cphy_0404 Clostridium phytofermentans ISDg hypothetical protein YP_001557530.1 515021 D 357809 CDS YP_001557531.1 160878563 5742273 515791..516495 1 NC_010001.1 PFAM: polysaccharide deacetylase; KEGG: cth:Cthe_1903 polysaccharide deacetylase; polysaccharide deacetylase 516495 5742273 Cphy_0405 Clostridium phytofermentans ISDg polysaccharide deacetylase YP_001557531.1 515791 D 357809 CDS YP_001557532.1 160878564 5742274 complement(516832..517254) 1 NC_010001.1 PFAM: histidine triad (HIT) protein; KEGG: cbe:Cbei_4080 histidine triad (HIT) protein; histidine triad (HIT) protein 517254 5742274 Cphy_0406 Clostridium phytofermentans ISDg histidine triad (HIT) protein YP_001557532.1 516832 R 357809 CDS YP_001557533.1 160878565 5742275 complement(517327..517848) 1 NC_010001.1 KEGG: cdf:CD3250 hypothetical protein; hypothetical protein 517848 5742275 Cphy_0407 Clostridium phytofermentans ISDg hypothetical protein YP_001557533.1 517327 R 357809 CDS YP_001557534.1 160878566 5745168 complement(517863..518804) 1 NC_010001.1 KEGG: cno:NT01CX_1004 radical SAM protein, TIGR01212 family; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 518804 5745168 Cphy_0408 Clostridium phytofermentans ISDg radical SAM protein YP_001557534.1 517863 R 357809 CDS YP_001557535.1 160878567 5745169 complement(518974..520125) 1 NC_010001.1 PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: cbf:CLI_0318 malic enzyme; malate dehydrogenase 520125 5745169 Cphy_0409 Clostridium phytofermentans ISDg malate dehydrogenase YP_001557535.1 518974 R 357809 CDS YP_001557536.1 160878568 5745170 520544..522496 1 NC_010001.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 522496 rho 5745170 rho Clostridium phytofermentans ISDg transcription termination factor Rho YP_001557536.1 520544 D 357809 CDS YP_001557537.1 160878569 5745171 522664..522876 1 NC_010001.1 PFAM: ribosomal protein L31; KEGG: bpu:BPUM_3350 ribosomal protein L31; 50S ribosomal protein L31 522876 5745171 Cphy_0411 Clostridium phytofermentans ISDg 50S ribosomal protein L31 YP_001557537.1 522664 D 357809 CDS YP_001557538.1 160878570 5745172 522996..524594 1 NC_010001.1 PFAM: protein of unknown function DUF1385; KEGG: sth:STH72 hypothetical protein; hypothetical protein 524594 5745172 Cphy_0412 Clostridium phytofermentans ISDg hypothetical protein YP_001557538.1 522996 D 357809 CDS YP_001557539.1 160878571 5745173 524625..525464 1 NC_010001.1 TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; KEGG: amt:Amet_0330 modification methylase, HemK family; protein-(glutamine-N5) methyltransferase 525464 5745173 Cphy_0413 Clostridium phytofermentans ISDg protein-(glutamine-N5) methyltransferase YP_001557539.1 524625 D 357809 CDS YP_001557540.1 160878572 5745174 525835..526911 1 NC_010001.1 TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: cdf:CD3484 peptide chain release factor 1; peptide chain release factor 1 526911 5745174 Cphy_0414 Clostridium phytofermentans ISDg peptide chain release factor 1 YP_001557540.1 525835 D 357809 CDS YP_001557541.1 160878573 5745175 527112..528479 1 NC_010001.1 PFAM: cation transporter; KEGG: lsl:LSL_0068 potassium uptake protein KtrB; H(+)-transporting two-sector ATPase 528479 5745175 Cphy_0415 Clostridium phytofermentans ISDg H(+)-transporting two-sector ATPase YP_001557541.1 527112 D 357809 CDS YP_001557542.1 160878574 5745176 528520..529173 1 NC_010001.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: cpf:CPF_2142 potassium uptake protein; TrkA domain-containing protein 529173 5745176 Cphy_0416 Clostridium phytofermentans ISDg TrkA domain-containing protein YP_001557542.1 528520 D 357809 CDS YP_001557543.1 160878575 5745177 529257..530051 1 NC_010001.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cth:Cthe_1222 RNA methyltransferase, TrmH family, group 3; tRNA/rRNA methyltransferase SpoU 530051 5745177 Cphy_0417 Clostridium phytofermentans ISDg tRNA/rRNA methyltransferase SpoU YP_001557543.1 529257 D 357809 CDS YP_001557544.1 160878576 5745178 530556..532223 1 NC_010001.1 KEGG: ddi:DDB_0232136 villin; hypothetical protein 532223 5745178 Cphy_0418 Clostridium phytofermentans ISDg hypothetical protein YP_001557544.1 530556 D 357809 CDS YP_001557545.1 160878577 5745179 532429..533778 1 NC_010001.1 PFAM: phosphoglucose isomerase (PGI); KEGG: gka:GK2924 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 533778 5745179 Cphy_0419 Clostridium phytofermentans ISDg glucose-6-phosphate isomerase YP_001557545.1 532429 D 357809 CDS YP_001557546.1 160878578 5745180 534111..535304 1 NC_010001.1 PFAM: Patatin; KEGG: amt:Amet_4656 patatin; patatin 535304 5745180 Cphy_0420 Clostridium phytofermentans ISDg patatin YP_001557546.1 534111 D 357809 CDS YP_001557547.1 160878579 5745181 535450..536388 1 NC_010001.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: bld:BLi04164 ornithine carbamoyltransferase; ornithine carbamoyltransferase 536388 5745181 Cphy_0421 Clostridium phytofermentans ISDg ornithine carbamoyltransferase YP_001557547.1 535450 D 357809 CDS YP_001557548.1 160878580 5745182 536737..537597 1 NC_010001.1 KEGG: sde:Sde_3902 heavy metal efflux pump CzcA; hypothetical protein 537597 5745182 Cphy_0422 Clostridium phytofermentans ISDg hypothetical protein YP_001557548.1 536737 D 357809 CDS YP_001557549.1 160878581 5745183 537817..538140 1 NC_010001.1 hypothetical protein 538140 5745183 Cphy_0423 Clostridium phytofermentans ISDg hypothetical protein YP_001557549.1 537817 D 357809 CDS YP_001557550.1 160878582 5745184 538204..538971 1 NC_010001.1 TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: cth:Cthe_2588 transcriptional acitvator, Baf family; Baf family transcriptional activator 538971 5745184 Cphy_0424 Clostridium phytofermentans ISDg Baf family transcriptional activator YP_001557550.1 538204 D 357809 CDS YP_001557551.1 160878583 5745185 539001..539975 1 NC_010001.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: tte:TTE0344 predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family; NifR3 family TIM-barrel protein 539975 5745185 Cphy_0425 Clostridium phytofermentans ISDg NifR3 family TIM-barrel protein YP_001557551.1 539001 D 357809 CDS YP_001557552.1 160878584 5745186 540343..541431 1 NC_010001.1 catalyzes the formation of aspartate semialdehyde from aspartyl phosphate; aspartate-semialdehyde dehydrogenase 541431 5745186 Cphy_0426 Clostridium phytofermentans ISDg aspartate-semialdehyde dehydrogenase YP_001557552.1 540343 D 357809 CDS YP_001557553.1 160878585 5745187 complement(541638..542369) 1 NC_010001.1 hypothetical protein 542369 5745187 Cphy_0427 Clostridium phytofermentans ISDg hypothetical protein YP_001557553.1 541638 R 357809 CDS YP_001557554.1 160878586 5745188 complement(542541..544196) 1 NC_010001.1 hypothetical protein 544196 5745188 Cphy_0428 Clostridium phytofermentans ISDg hypothetical protein YP_001557554.1 542541 R 357809 CDS YP_001557555.1 160878587 5745189 complement(544531..545874) 1 NC_010001.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: sth:STH226 uracil permease; uracil-xanthine permease 545874 5745189 Cphy_0429 Clostridium phytofermentans ISDg uracil-xanthine permease YP_001557555.1 544531 R 357809 CDS YP_001557556.1 160878588 5745190 547250..549745 1 NC_010001.1 PFAM: carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: cth:Cthe_0275 glycosyltransferase 36; glycosyltransferase 549745 5745190 Cphy_0430 Clostridium phytofermentans ISDg glycosyltransferase YP_001557556.1 547250 D 357809 CDS YP_001557557.1 160878589 5745191 550144..551712 1 NC_010001.1 PFAM: extracellular solute-binding protein family 5; KEGG: fnu:FN1359 dipeptide-binding protein; extracellular solute-binding protein 551712 5745191 Cphy_0431 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001557557.1 550144 D 357809 CDS YP_001557558.1 160878590 5745192 551801..552742 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL0227 transmembrane component of ABC transporter; binding-protein-dependent transport systems inner membrane component 552742 5745192 Cphy_0432 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001557558.1 551801 D 357809 CDS YP_001557559.1 160878591 5745193 552764..553552 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB3067 oligopeptide ABC transporter permease; binding-protein-dependent transport systems inner membrane component 553552 5745193 Cphy_0433 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001557559.1 552764 D 357809 CDS YP_001557560.1 160878592 5745194 553633..555201 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chu:CHU_0463 ABC transporter, ATP-binding protein; ABC transporter 555201 5745194 Cphy_0434 Clostridium phytofermentans ISDg ABC transporter YP_001557560.1 553633 D 357809 CDS YP_001557561.1 160878593 5745195 555303..555656 1 NC_010001.1 KEGG: cbe:Cbei_2981 hypothetical protein; hypothetical protein 555656 5745195 Cphy_0435 Clostridium phytofermentans ISDg hypothetical protein YP_001557561.1 555303 D 357809 CDS YP_001557562.1 160878594 5745196 555968..557662 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mba:Mbar_A0989 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 557662 5745196 Cphy_0436 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001557562.1 555968 D 357809 CDS YP_001557563.1 160878595 5745197 557869..558348 1 NC_010001.1 PFAM: ferric-uptake regulator; KEGG: cbf:CLI_2623 transcriptional regulator, Fur family; ferric uptake regulator family protein 558348 5745197 Cphy_0437 Clostridium phytofermentans ISDg ferric uptake regulator family protein YP_001557563.1 557869 D 357809 CDS YP_001557564.1 160878596 5745198 558894..559904 1 NC_010001.1 PFAM: periplasmic solute binding protein; KEGG: lmf:LMOf2365_0168 zinc ABC transporter, zinc-binding protein; periplasmic solute binding protein 559904 5745198 Cphy_0438 Clostridium phytofermentans ISDg periplasmic solute binding protein YP_001557564.1 558894 D 357809 CDS YP_001557565.1 160878597 5745199 559906..560619 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sun:SUN_1062 Mn2+/Zn2+ ABC transporter, ATP-binding protein; ABC transporter 560619 5745199 Cphy_0439 Clostridium phytofermentans ISDg ABC transporter YP_001557565.1 559906 D 357809 CDS YP_001557566.1 160878598 5745200 560616..561461 1 NC_010001.1 PFAM: ABC-3 protein; inner-membrane translocator; KEGG: gur:Gura_0048 ABC-3 protein; ABC-3 protein 561461 5745200 Cphy_0440 Clostridium phytofermentans ISDg ABC-3 protein YP_001557566.1 560616 D 357809 CDS YP_001557567.1 160878599 5745201 561500..562153 1 NC_010001.1 hypothetical protein 562153 5745201 Cphy_0441 Clostridium phytofermentans ISDg hypothetical protein YP_001557567.1 561500 D 357809 CDS YP_001557568.1 160878600 5745202 562582..564438 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0836 ABC-type multidrug/protein/lipid transport system, ATPase component; ABC transporter 564438 5745202 Cphy_0442 Clostridium phytofermentans ISDg ABC transporter YP_001557568.1 562582 D 357809 CDS YP_001557569.1 160878601 5745203 564450..566216 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0835 ABC-type multidrug/protein/lipid transport system, ATPase component; ABC transporter 566216 5745203 Cphy_0443 Clostridium phytofermentans ISDg ABC transporter YP_001557569.1 564450 D 357809 CDS YP_001557570.1 160878602 5745204 566471..567052 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbe:Cbei_1948 hypothetical protein; N-acetyltransferase GCN5 567052 5745204 Cphy_0444 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001557570.1 566471 D 357809 CDS YP_001557571.1 160878603 5745205 567284..568786 1 NC_010001.1 PFAM: SCP-like extracellular; KEGG: cth:Cthe_0779 copper amine oxidase-like protein; SCP-like extracellular 568786 5745205 Cphy_0445 Clostridium phytofermentans ISDg SCP-like extracellular YP_001557571.1 567284 D 357809 CDS YP_001557572.1 160878604 5745206 569177..570013 1 NC_010001.1 PFAM: beta-lactamase domain protein; KEGG: cbf:CLI_2342 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 570013 5745206 Cphy_0446 Clostridium phytofermentans ISDg beta-lactamase domain-containing protein YP_001557572.1 569177 D 357809 CDS YP_001557573.1 160878605 5745207 570388..570882 1 NC_010001.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: lsl:LSL_0495 bacterial protein translation initiation factor 3 (IF-3); translation initiation factor IF-3 570882 5745207 Cphy_0447 Clostridium phytofermentans ISDg translation initiation factor IF-3 YP_001557573.1 570388 D 357809 CDS YP_001557574.1 160878606 5745208 570973..571170 1 NC_010001.1 PFAM: ribosomal protein L35; KEGG: cbf:CLI_3194 ribosomal protein L35; 50S ribosomal protein L35 571170 rpmI 5745208 rpmI Clostridium phytofermentans ISDg 50S ribosomal protein L35 YP_001557574.1 570973 D 357809 CDS YP_001557575.1 160878607 5745209 571198..571554 1 NC_010001.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 571554 rplT 5745209 rplT Clostridium phytofermentans ISDg 50S ribosomal protein L20 YP_001557575.1 571198 D 357809 CDS YP_001557576.1 160878608 5745210 571881..574442 1 NC_010001.1 hypothetical protein 574442 5745210 Cphy_0450 Clostridium phytofermentans ISDg hypothetical protein YP_001557576.1 571881 D 357809 CDS YP_001557577.1 160878609 5745211 574524..576572 1 NC_010001.1 KEGG: tet:TTHERM_00245510 Phage tail fiber repeat family protein Pfam: Drf_FH1 PROSITE: ASN_RICH HIS_RICH THR_RICH; hypothetical protein 576572 5745211 Cphy_0451 Clostridium phytofermentans ISDg hypothetical protein YP_001557577.1 574524 D 357809 CDS YP_001557578.1 160878610 5745212 576883..577551 1 NC_010001.1 KEGG: cbf:CLI_0630 hypothetical protein; hypothetical protein 577551 5745212 Cphy_0452 Clostridium phytofermentans ISDg hypothetical protein YP_001557578.1 576883 D 357809 CDS YP_001557579.1 160878611 5745213 577548..578456 1 NC_010001.1 KEGG: tde:TDE1862 hypothetical protein; hypothetical protein 578456 5745213 Cphy_0453 Clostridium phytofermentans ISDg hypothetical protein YP_001557579.1 577548 D 357809 CDS YP_001557580.1 160878612 5745214 578474..578797 1 NC_010001.1 KEGG: dsy:DSY4222 hypothetical protein; hypothetical protein 578797 5745214 Cphy_0454 Clostridium phytofermentans ISDg hypothetical protein YP_001557580.1 578474 D 357809 CDS YP_001557581.1 160878613 5745215 579149..580342 1 NC_010001.1 PFAM: aminotransferase class I and II; KEGG: cbf:CLI_1497 aminotransferase, classes I and II; class I and II aminotransferase 580342 5745215 Cphy_0455 Clostridium phytofermentans ISDg class I and II aminotransferase YP_001557581.1 579149 D 357809 CDS YP_001557582.1 160878614 5745216 580553..581356 1 NC_010001.1 KEGG: csc:Csac_1076 glycoside hydrolase, family 48; hypothetical protein 581356 5745216 Cphy_0456 Clostridium phytofermentans ISDg hypothetical protein YP_001557582.1 580553 D 357809 CDS YP_001557583.1 160878615 5745217 581798..585355 1 NC_010001.1 hypothetical protein 585355 5745217 Cphy_0457 Clostridium phytofermentans ISDg hypothetical protein YP_001557583.1 581798 D 357809 CDS YP_001557584.1 160878616 5745218 585371..586633 1 NC_010001.1 hypothetical protein 586633 5745218 Cphy_0458 Clostridium phytofermentans ISDg hypothetical protein YP_001557584.1 585371 D 357809 CDS YP_001557585.1 160878617 5745219 586714..587550 1 NC_010001.1 hypothetical protein 587550 5745219 Cphy_0459 Clostridium phytofermentans ISDg hypothetical protein YP_001557585.1 586714 D 357809 CDS YP_001557586.1 160878618 5745220 587565..588851 1 NC_010001.1 KEGG: mst:Msp_1095 DNA double-strand break repair protein Rad50; hypothetical protein 588851 5745220 Cphy_0460 Clostridium phytofermentans ISDg hypothetical protein YP_001557586.1 587565 D 357809 CDS YP_001557587.1 160878619 5745221 complement(589088..589747) 1 NC_010001.1 KEGG: bha:BH0719 transcriptional regulator (TetR/AcrR family); TetR family transcriptional regulator 589747 5745221 Cphy_0461 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001557587.1 589088 R 357809 CDS YP_001557588.1 160878620 5745222 590029..591552 1 NC_010001.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: pdi:BDI_2305 hypothetical protein; NAD-dependent epimerase/dehydratase 591552 5745222 Cphy_0462 Clostridium phytofermentans ISDg NAD-dependent epimerase/dehydratase YP_001557588.1 590029 D 357809 CDS YP_001557589.1 160878621 5745223 complement(591657..592304) 1 NC_010001.1 alkyl hydroperoxidase; catalyze the reduction of hydrogen peroxide to water and the reduction of alkyl hydroperoxides to the corresponding alcohols; peroxiredoxin 592304 5745223 Cphy_0463 Clostridium phytofermentans ISDg peroxiredoxin YP_001557589.1 591657 R 357809 CDS YP_001557590.1 160878622 5745224 complement(592816..593595) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_2657 transcriptional regulator, AraC family; AraC family transcriptional regulator 593595 5745224 Cphy_0464 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001557590.1 592816 R 357809 CDS YP_001557591.1 160878623 5745225 593931..594581 1 NC_010001.1 KEGG: bha:BH0709 hypothetical protein; hypothetical protein 594581 5745225 Cphy_0465 Clostridium phytofermentans ISDg hypothetical protein YP_001557591.1 593931 D 357809 CDS YP_001557592.1 160878624 5745226 594661..595767 1 NC_010001.1 PFAM: oxidoreductase domain protein; KEGG: rca:Rcas_4405 oxidoreductase domain protein; oxidoreductase domain-containing protein 595767 5745226 Cphy_0466 Clostridium phytofermentans ISDg oxidoreductase domain-containing protein YP_001557592.1 594661 D 357809 CDS YP_001557593.1 160878625 5745227 596301..597020 1 NC_010001.1 KEGG: cbe:Cbei_3248 hypothetical protein; hypothetical protein 597020 5745227 Cphy_0467 Clostridium phytofermentans ISDg hypothetical protein YP_001557593.1 596301 D 357809 CDS YP_001557594.1 160878626 5745228 597010..597909 1 NC_010001.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: cpf:CPF_0871 transposase, IS605 OrfB family; IS605 family transposase OrfB 597909 5745228 Cphy_0468 Clostridium phytofermentans ISDg IS605 family transposase OrfB YP_001557594.1 597010 D 357809 CDS YP_001557595.1 160878627 5745229 598077..598439 1 NC_010001.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dsy:DSY4986 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 598439 5745229 Cphy_0469 Clostridium phytofermentans ISDg glyoxalase/bleomycin resistance protein/dioxygenase YP_001557595.1 598077 D 357809 CDS YP_001557596.1 160878628 5745230 598623..598913 1 NC_010001.1 hypothetical protein 598913 5745230 Cphy_0470 Clostridium phytofermentans ISDg hypothetical protein YP_001557596.1 598623 D 357809 CDS YP_001557597.1 160878629 5745231 599021..599428 1 NC_010001.1 hypothetical protein 599428 5745231 Cphy_0471 Clostridium phytofermentans ISDg hypothetical protein YP_001557597.1 599021 D 357809 CDS YP_001557598.1 160878630 5745232 599953..602631 1 NC_010001.1 TIGRFAM: valyl-tRNA synthetase; KEGG: cth:Cthe_0324 valyl-tRNA synthetase; valyl-tRNA synthetase 602631 5745232 Cphy_0472 Clostridium phytofermentans ISDg valyl-tRNA synthetase YP_001557598.1 599953 D 357809 CDS YP_001557599.1 160878631 5745233 602764..604167 1 NC_010001.1 PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 protein of unknown function DUF342; hypothetical protein 604167 5745233 Cphy_0473 Clostridium phytofermentans ISDg hypothetical protein YP_001557599.1 602764 D 357809 CDS YP_001557600.1 160878632 5745234 604694..604831 1 NC_010001.1 hypothetical protein 604831 5745234 Cphy_0474 Clostridium phytofermentans ISDg hypothetical protein YP_001557600.1 604694 D 357809 CDS YP_001557601.1 160878633 5745235 604922..606331 1 NC_010001.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cth:Cthe_1383 tetratricopeptide TPR_2; hypothetical protein 606331 5745235 Cphy_0475 Clostridium phytofermentans ISDg hypothetical protein YP_001557601.1 604922 D 357809 CDS YP_001557602.1 160878634 5745236 606468..606851 1 NC_010001.1 TIGRFAM: anti-anti-sigma factor; anti-sigma F factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: amt:Amet_2212 anti-sigma-factor antagonist; anti-sigma-factor antagonist 606851 5745236 Cphy_0476 Clostridium phytofermentans ISDg anti-sigma-factor antagonist YP_001557602.1 606468 D 357809 CDS YP_001557603.1 160878635 5745237 606901..607374 1 NC_010001.1 binds to sigma F preventing its association with RNA polymerase during sporulation; anti-sigma F factor 607374 5745237 Cphy_0477 Clostridium phytofermentans ISDg anti-sigma F factor YP_001557603.1 606901 D 357809 CDS YP_001557604.1 160878636 5745238 607410..608126 1 NC_010001.1 TIGRFAM: RNA polymerase sigma-F factor; RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: amt:Amet_2214 RNA polymerase, sigma 28 subunit, FliA/WhiG family; FliA/WhiG family RNA polymerase sigma factor 608126 5745238 Cphy_0478 Clostridium phytofermentans ISDg FliA/WhiG family RNA polymerase sigma factor YP_001557604.1 607410 D 357809 CDS YP_001557605.1 160878637 5745239 608639..609142 1 NC_010001.1 TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein; KEGG: drm:Dred_1106 SpoVA protein; stage V sporulation protein AC 609142 5745239 Cphy_0479 Clostridium phytofermentans ISDg stage V sporulation protein AC YP_001557605.1 608639 D 357809 CDS YP_001557606.1 160878638 5745240 609211..610278 1 NC_010001.1 TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein; KEGG: amt:Amet_2220 stage V sporulation AD family protein; stage V sporulation protein AD 610278 5745240 Cphy_0480 Clostridium phytofermentans ISDg stage V sporulation protein AD YP_001557606.1 609211 D 357809 CDS YP_001557607.1 160878639 5745241 610291..610647 1 NC_010001.1 TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein; KEGG: tte:TTE1321 sporulation protein; stage V sporulation protein AE 610647 5745241 Cphy_0481 Clostridium phytofermentans ISDg stage V sporulation protein AE YP_001557607.1 610291 D 357809 CDS YP_001557608.1 160878640 5745242 611142..611612 1 NC_010001.1 KEGG: sde:Sde_3238 hypothetical protein; hypothetical protein 611612 5745242 Cphy_0482 Clostridium phytofermentans ISDg hypothetical protein YP_001557608.1 611142 D 357809 CDS YP_001557609.1 160878641 5745243 612076..612411 1 NC_010001.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: ppr:PBPRB1735 hypothetical protein; cupin 612411 5745243 Cphy_0483 Clostridium phytofermentans ISDg cupin YP_001557609.1 612076 D 357809 CDS YP_001557610.1 160878642 5745244 612448..613455 1 NC_010001.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cac:CAC0393 KDG operon repressor (gene kdgR), LacI family; LacI family transcriptional regulator 613455 5745244 Cphy_0484 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001557610.1 612448 D 357809 CDS YP_001557611.1 160878643 5745245 613468..614448 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, multiple sugar transport system permease; binding-protein-dependent transport system inner membrane protein 614448 5745245 Cphy_0485 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557611.1 613468 D 357809 CDS YP_001557612.1 160878644 5745246 614460..615353 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3561 AlgM2, multiple sugar transport system permease; binding-protein-dependent transport system inner membrane protein 615353 5745246 Cphy_0486 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557612.1 614460 D 357809 CDS YP_001557613.1 160878645 5745247 615427..617103 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_3560 AlgQ1, multiple sugar transport system substrate-binding protein; extracellular solute-binding protein 617103 5745247 Cphy_0487 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001557613.1 615427 D 357809 CDS YP_001557614.1 160878646 5745248 617267..619552 1 NC_010001.1 PFAM: Heparinase II/III family protein; KEGG: atc:AGR_L_3558 hypothetical protein; heparinase II/III family protein 619552 5745248 Cphy_0488 Clostridium phytofermentans ISDg heparinase II/III family protein YP_001557614.1 617267 D 357809 CDS YP_001557615.1 160878647 5745249 619572..621440 1 NC_010001.1 PFAM: Heparinase II/III family protein; KEGG: ypi:YpsIP31758_3577 heparinase II/III-like family protein; heparinase II/III family protein 621440 5745249 Cphy_0489 Clostridium phytofermentans ISDg heparinase II/III family protein YP_001557615.1 619572 D 357809 CDS YP_001557616.1 160878648 5743404 621481..622278 1 NC_010001.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 622278 5743404 Cphy_0490 Clostridium phytofermentans ISDg gluconate 5-dehydrogenase YP_001557616.1 621481 D 357809 CDS YP_001557617.1 160878649 5743405 622395..623030 1 NC_010001.1 PFAM: Ribose/galactose isomerase; KEGG: cbe:Cbei_3370 ribose/galactose isomerase; hypothetical protein 623030 5743405 Cphy_0491 Clostridium phytofermentans ISDg hypothetical protein YP_001557617.1 622395 D 357809 CDS YP_001557618.1 160878650 5743406 623046..627716 1 NC_010001.1 PFAM: Peptidoglycan-binding LysM; Ig domain protein group 2 domain protein; Alginate lyase 2; KEGG: pau:PA14_41500 lyase; alginate lyase 2 627716 5743406 Cphy_0492 Clostridium phytofermentans ISDg alginate lyase 2 YP_001557618.1 623046 D 357809 CDS YP_001557619.1 160878651 5743407 627945..630125 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_0287 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 630125 5743407 Cphy_0493 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001557619.1 627945 D 357809 CDS YP_001557620.1 160878652 5743408 630357..631754 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: gtn:GTNG_0824 sugar transport system sugar-binding protein; extracellular solute-binding protein 631754 5743408 Cphy_0494 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001557620.1 630357 D 357809 CDS YP_001557621.1 160878653 5743409 631901..633715 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4458 histidine kinase internal region; histidine kinase internal region 633715 5743409 Cphy_0495 Clostridium phytofermentans ISDg histidine kinase internal region YP_001557621.1 631901 D 357809 CDS YP_001557622.1 160878654 5743410 633810..635441 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cbe:Cbei_4431 response regulator receiver protein; two component AraC family transcriptional regulator 635441 5743410 Cphy_0496 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001557622.1 633810 D 357809 CDS YP_001557623.1 160878655 5743411 complement(635568..638291) 1 NC_010001.1 PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: cno:NT01CX_1810 penicillin-binding protein 1A/1B; glycosyl transferase family protein 638291 5743411 Cphy_0497 Clostridium phytofermentans ISDg glycosyl transferase family protein YP_001557623.1 635568 R 357809 CDS YP_001557624.1 160878656 5743412 complement(638612..641344) 1 NC_010001.1 PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: cno:NT01CX_1810 penicillin-binding protein 1A/1B; glycosyl transferase family protein 641344 5743412 Cphy_0498 Clostridium phytofermentans ISDg glycosyl transferase family protein YP_001557624.1 638612 R 357809 CDS YP_001557625.1 160878657 5743413 complement(641556..642212) 1 NC_010001.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: gka:GK3152 hypothetical protein; hypothetical protein 642212 5743413 Cphy_0499 Clostridium phytofermentans ISDg hypothetical protein YP_001557625.1 641556 R 357809 CDS YP_001557626.1 160878658 5743414 642483..643010 1 NC_010001.1 PFAM: VanZ family protein; KEGG: cbh:CLC_2550 VanZ family protein; VanZ family protein 643010 5743414 Cphy_0500 Clostridium phytofermentans ISDg VanZ family protein YP_001557626.1 642483 D 357809 CDS YP_001557627.1 160878659 5743415 complement(643059..643232) 1 NC_010001.1 KEGG: pdi:BDI_1526 hypothetical protein; hypothetical protein 643232 5743415 Cphy_0501 Clostridium phytofermentans ISDg hypothetical protein YP_001557627.1 643059 R 357809 CDS YP_001557628.1 160878660 5743416 643428..644762 1 NC_010001.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: chy:CHY_2201 ATPase, AAA family; recombination factor protein RarA 644762 5743416 Cphy_0502 Clostridium phytofermentans ISDg recombination factor protein RarA YP_001557628.1 643428 D 357809 CDS YP_001557629.1 160878661 5743417 644853..645194 1 NC_010001.1 hypothetical protein 645194 5743417 Cphy_0503 Clostridium phytofermentans ISDg hypothetical protein YP_001557629.1 644853 D 357809 CDS YP_001557630.1 160878662 5743418 645905..646405 1 NC_010001.1 PFAM: SEC-C motif domain protein; KEGG: cno:NT01CX_0951 hypothetical protein; hypothetical protein 646405 5743418 Cphy_0504 Clostridium phytofermentans ISDg hypothetical protein YP_001557630.1 645905 D 357809 CDS YP_001557631.1 160878663 5743419 646539..647039 1 NC_010001.1 KEGG: bth:BT_4765 hypothetical protein; hypothetical protein 647039 5743419 Cphy_0505 Clostridium phytofermentans ISDg hypothetical protein YP_001557631.1 646539 D 357809 CDS YP_001557632.1 160878664 5743420 647014..647556 1 NC_010001.1 hypothetical protein 647556 5743420 Cphy_0506 Clostridium phytofermentans ISDg hypothetical protein YP_001557632.1 647014 D 357809 CDS YP_001557633.1 160878665 5743421 648281..648649 1 NC_010001.1 hypothetical protein 648649 5743421 Cphy_0507 Clostridium phytofermentans ISDg hypothetical protein YP_001557633.1 648281 D 357809 CDS YP_001557634.1 160878666 5743422 649202..649936 1 NC_010001.1 hypothetical protein 649936 5743422 Cphy_0508 Clostridium phytofermentans ISDg hypothetical protein YP_001557634.1 649202 D 357809 CDS YP_001557635.1 160878667 5743423 complement(650047..650415) 1 NC_010001.1 KEGG: cac:CAC1316 predicted membrane protein; membrane protein 650415 5743423 Cphy_0509 Clostridium phytofermentans ISDg membrane protein YP_001557635.1 650047 R 357809 CDS YP_001557636.1 160878668 5743424 complement(650678..651022) 1 NC_010001.1 PFAM: helix-turn-helix domain protein; KEGG: chy:CHY_1697 prophage LambdaCh01, repressor protein; XRE family transcriptional regulator 651022 5743424 Cphy_0510 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001557636.1 650678 R 357809 CDS YP_001557637.1 160878669 5743425 651219..652691 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cth:Cthe_0806 PAS/PAC sensor hybrid histidine kinase; PAS/PAC sensor signal transduction histidine kinase 652691 5743425 Cphy_0511 Clostridium phytofermentans ISDg PAS/PAC sensor signal transduction histidine kinase YP_001557637.1 651219 D 357809 CDS YP_001557638.1 160878670 5743426 652706..653812 1 NC_010001.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: gme:Gmet_2999 response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase 653812 5743426 Cphy_0512 Clostridium phytofermentans ISDg response regulator receiver modulated metal dependent phosphohydrolase YP_001557638.1 652706 D 357809 CDS YP_001557639.1 160878671 5743427 654074..655546 1 NC_010001.1 KEGG: amt:Amet_4521 hypothetical protein; hypothetical protein 655546 5743427 Cphy_0513 Clostridium phytofermentans ISDg hypothetical protein YP_001557639.1 654074 D 357809 CDS YP_001557640.1 160878672 5743428 655666..656220 1 NC_010001.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: cbe:Cbei_1302 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 656220 5743428 Cphy_0514 Clostridium phytofermentans ISDg ECF subfamily RNA polymerase sigma-24 factor YP_001557640.1 655666 D 357809 CDS YP_001557641.1 160878673 5743429 656236..656652 1 NC_010001.1 hypothetical protein 656652 5743429 Cphy_0515 Clostridium phytofermentans ISDg hypothetical protein YP_001557641.1 656236 D 357809 CDS YP_001557642.1 160878674 5743430 656934..657851 1 NC_010001.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: cth:Cthe_0935 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 657851 5743430 Cphy_0516 Clostridium phytofermentans ISDg malonyl CoA-acyl carrier protein transacylase YP_001557642.1 656934 D 357809 CDS YP_001557643.1 160878675 5743431 657952..658692 1 NC_010001.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bha:BH2491 3-oxoacyl-(acyl-carrier protein) reductase; 3-oxoacyl-ACP reductase 658692 5743431 Cphy_0517 Clostridium phytofermentans ISDg 3-oxoacyl-ACP reductase YP_001557643.1 657952 D 357809 CDS YP_001557644.1 160878676 5743432 658744..659979 1 NC_010001.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: cbf:CLI_3824 3-oxoacyl-(acyl-carrier-protein) synthase II; 3-oxoacyl-ACP synthase 659979 5743432 Cphy_0518 Clostridium phytofermentans ISDg 3-oxoacyl-ACP synthase YP_001557644.1 658744 D 357809 CDS YP_001557645.1 160878677 5743433 660000..660431 1 NC_010001.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sgo:SGO_1691 acetyl-CoA carboxylase, biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 660431 5743433 Cphy_0519 Clostridium phytofermentans ISDg acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_001557645.1 660000 D 357809 CDS YP_001557646.1 160878678 5743434 660574..660999 1 NC_010001.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: cbh:CLC_3575 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 660999 5743434 Cphy_0520 Clostridium phytofermentans ISDg beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YP_001557646.1 660574 D 357809 CDS YP_001557647.1 160878679 5743435 661081..662427 1 NC_010001.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: cbf:CLI_3821 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 662427 5743435 Cphy_0521 Clostridium phytofermentans ISDg acetyl-CoA carboxylase, biotin carboxylase YP_001557647.1 661081 D 357809 CDS YP_001557648.1 160878680 5743436 662529..663455 1 NC_010001.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: cac:CAC3569 acetyl-CoA carboxylase beta subunit; acetyl-CoA carboxylase, carboxyl transferase subunit beta 663455 5743436 Cphy_0522 Clostridium phytofermentans ISDg acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_001557648.1 662529 D 357809 CDS YP_001557649.1 160878681 5743437 663483..664382 1 NC_010001.1 KEGG: cac:CAC3568 acetyl-CoA carboxylase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 664382 5743437 Cphy_0523 Clostridium phytofermentans ISDg acetyl-CoA carboxylase, carboxyl transferase subunit alpha YP_001557649.1 663483 D 357809 CDS YP_001557650.1 160878682 5743438 664806..665345 1 NC_010001.1 PFAM: Rubrerythrin; KEGG: cdf:CD0825 rubrerythrin; rubrerythrin 665345 5743438 Cphy_0524 Clostridium phytofermentans ISDg rubrerythrin YP_001557650.1 664806 D 357809 CDS YP_001557651.1 160878683 5743439 complement(665552..667120) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cpf:CPF_0555 DNA-binding response regulator, AraC family; two component AraC family transcriptional regulator 667120 5743439 Cphy_0525 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001557651.1 665552 R 357809 CDS YP_001557652.1 160878684 5743440 complement(667117..668901) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4458 histidine kinase internal region; histidine kinase internal region 668901 5743440 Cphy_0526 Clostridium phytofermentans ISDg histidine kinase internal region YP_001557652.1 667117 R 357809 CDS YP_001557653.1 160878685 5743441 669186..670076 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120664 permease component of ABC transporter; binding-protein-dependent transport systems inner membrane component 670076 5743441 Cphy_0527 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001557653.1 669186 D 357809 CDS YP_001557654.1 160878686 5743442 670088..670933 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120663 permease component of ABC transporter; binding-protein-dependent transport systems inner membrane component 670933 5743442 Cphy_0528 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001557654.1 670088 D 357809 CDS YP_001557655.1 160878687 5743443 671066..672460 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: efa:EF2234 sugar ABC transporter, sugar-binding protein; extracellular solute-binding protein 672460 5743443 Cphy_0529 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001557655.1 671066 D 357809 CDS YP_001557656.1 160878688 5743444 672748..674523 1 NC_010001.1 PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: sit:TM1040_3871 beta-glucuronidase; beta-galactosidase 674523 5743444 Cphy_0530 Clostridium phytofermentans ISDg beta-galactosidase YP_001557656.1 672748 D 357809 CDS YP_001557657.1 160878689 5743445 674706..676121 1 NC_010001.1 PFAM: glycoside hydrolase family 43; KEGG: cth:Cthe_1271 carbohydrate binding family 6; alpha-N-arabinofuranosidase 676121 5743445 Cphy_0531 Clostridium phytofermentans ISDg alpha-N-arabinofuranosidase YP_001557657.1 674706 D 357809 CDS YP_001557658.1 160878690 5743446 676231..677979 1 NC_010001.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cdf:CD2247 germination-specific protease; peptidase S8/S53 subtilisin kexin sedolisin 677979 5743446 Cphy_0532 Clostridium phytofermentans ISDg peptidase S8/S53 subtilisin kexin sedolisin YP_001557658.1 676231 D 357809 CDS YP_001557659.1 160878691 5743447 678258..679514 1 NC_010001.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cth:Cthe_2680 peptidase S41; TPR repeat-containing protein 679514 5743447 Cphy_0533 Clostridium phytofermentans ISDg TPR repeat-containing protein YP_001557659.1 678258 D 357809 CDS YP_001557660.1 160878692 5743448 679533..680795 1 NC_010001.1 TIGRFAM: small GTP-binding protein; GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: tte:TTE1127 GTPases; GTP-binding protein HflX 680795 5743448 Cphy_0534 Clostridium phytofermentans ISDg GTP-binding protein HflX YP_001557660.1 679533 D 357809 CDS YP_001557661.1 160878693 5743449 681064..683466 1 NC_010001.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 683466 5743449 Cphy_0535 Clostridium phytofermentans ISDg anaerobic ribonucleoside triphosphate reductase YP_001557661.1 681064 D 357809 CDS YP_001557662.1 160878694 5743450 683808..685622 1 NC_010001.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cdf:CD3625 signaling protein; diguanylate cyclase 685622 5743450 Cphy_0536 Clostridium phytofermentans ISDg diguanylate cyclase YP_001557662.1 683808 D 357809 CDS YP_001557663.1 160878695 5743451 685938..687008 1 NC_010001.1 TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: cth:Cthe_0856 branched-chain amino acid aminotransferase; branched-chain amino acid aminotransferase 687008 5743451 Cphy_0537 Clostridium phytofermentans ISDg branched-chain amino acid aminotransferase YP_001557663.1 685938 D 357809 CDS YP_001557664.1 160878696 5743452 687149..688120 1 NC_010001.1 PFAM: polysaccharide deacetylase; KEGG: ckl:CKL_0600 predicted polysaccharide deacetylase; polysaccharide deacetylase 688120 5743452 Cphy_0538 Clostridium phytofermentans ISDg polysaccharide deacetylase YP_001557664.1 687149 D 357809 CDS YP_001557665.1 160878697 5743453 complement(688261..689655) 1 NC_010001.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cdf:CD0551 spore cortex-lytic enzyme pre-pro-form ( spore peptidoglycan hydrolase); peptidoglycan binding domain-containing protein 689655 5743453 Cphy_0539 Clostridium phytofermentans ISDg peptidoglycan binding domain-containing protein YP_001557665.1 688261 R 357809 CDS YP_001557666.1 160878698 5743454 690089..691351 1 NC_010001.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 691351 5743454 Cphy_0540 Clostridium phytofermentans ISDg carbamoyl phosphate synthase small subunit YP_001557666.1 690089 D 357809 CDS YP_001557667.1 160878699 5743455 691351..694551 1 NC_010001.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 694551 carB 5743455 carB Clostridium phytofermentans ISDg carbamoyl phosphate synthase large subunit YP_001557667.1 691351 D 357809 CDS YP_001557668.1 160878700 5743456 complement(694720..695130) 1 NC_010001.1 hypothetical protein 695130 5743456 Cphy_0542 Clostridium phytofermentans ISDg hypothetical protein YP_001557668.1 694720 R 357809 CDS YP_001557669.1 160878701 5743457 complement(695551..698313) 1 NC_010001.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cdf:CD3373 magnesium transporting ATPase, P-type; magnesium-translocating P-type ATPase 698313 5743457 Cphy_0543 Clostridium phytofermentans ISDg magnesium-translocating P-type ATPase YP_001557669.1 695551 R 357809 CDS YP_001557670.1 160878702 5743458 complement(698717..699220) 1 NC_010001.1 PFAM: transcriptional regulator domain protein; KEGG: cdf:CD3376 transcriptional regulator; winged helix family two component response transcriptional regulator 699220 5743458 Cphy_0544 Clostridium phytofermentans ISDg winged helix family two component response transcriptional regulator YP_001557670.1 698717 R 357809 CDS YP_001557671.1 160878703 5743459 699850..701943 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: amt:Amet_0212 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 701943 5743459 Cphy_0545 Clostridium phytofermentans ISDg 4Fe-4S ferredoxin YP_001557671.1 699850 D 357809 CDS YP_001557672.1 160878704 5743460 702304..704553 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: amt:Amet_0212 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 704553 5743460 Cphy_0546 Clostridium phytofermentans ISDg 4Fe-4S ferredoxin YP_001557672.1 702304 D 357809 CDS YP_001557673.1 160878705 5743461 704732..705256 1 NC_010001.1 KEGG: cno:NT01CX_1843 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; adenine phosphoribosyltransferase 705256 5743461 Cphy_0547 Clostridium phytofermentans ISDg adenine phosphoribosyltransferase YP_001557673.1 704732 D 357809 CDS YP_001557674.1 160878706 5743462 705501..707942 1 NC_010001.1 KEGG: cth:Cthe_1344 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 707942 5743462 Cphy_0548 Clostridium phytofermentans ISDg (p)ppGpp synthetase I SpoT/RelA YP_001557674.1 705501 D 357809 CDS YP_001557675.1 160878707 5743463 708053..708703 1 NC_010001.1 PFAM: beta-lactamase domain protein; KEGG: chy:CHY_2221 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 708703 5743463 Cphy_0549 Clostridium phytofermentans ISDg beta-lactamase domain-containing protein YP_001557675.1 708053 D 357809 CDS YP_001557676.1 160878708 5743464 708704..710179 1 NC_010001.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 710179 5743464 Cphy_0550 Clostridium phytofermentans ISDg coproporphyrinogen III oxidase YP_001557676.1 708704 D 357809 CDS YP_001557677.1 160878709 5743465 710182..710904 1 NC_010001.1 KEGG: chy:CHY_1969 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 710904 5743465 Cphy_0551 Clostridium phytofermentans ISDg metal dependent phosphohydrolase YP_001557677.1 710182 D 357809 CDS YP_001557678.1 160878710 5743466 711008..712261 1 NC_010001.1 KEGG: cbe:Cbei_1544 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; histidyl-tRNA synthetase 712261 5743466 Cphy_0552 Clostridium phytofermentans ISDg histidyl-tRNA synthetase YP_001557678.1 711008 D 357809 CDS YP_001557679.1 160878711 5743467 712412..714208 1 NC_010001.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: csc:Csac_0677 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 714208 5743467 Cphy_0553 Clostridium phytofermentans ISDg aspartyl-tRNA synthetase YP_001557679.1 712412 D 357809 CDS YP_001557680.1 160878712 5743468 714315..714527 1 NC_010001.1 PFAM: protein of unknown function DUF1294; KEGG: cbh:CLC_2171 hypothetical protein; hypothetical protein 714527 5743468 Cphy_0554 Clostridium phytofermentans ISDg hypothetical protein YP_001557680.1 714315 D 357809 CDS YP_001557681.1 160878713 5743469 714687..714887 1 NC_010001.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: amt:Amet_1627 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 714887 5743469 Cphy_0555 Clostridium phytofermentans ISDg cold-shock DNA-binding domain-containing protein YP_001557681.1 714687 D 357809 CDS YP_001557682.1 160878714 5743470 715212..716273 1 NC_010001.1 PFAM: Aldose 1-epimerase; KEGG: cbe:Cbei_4465 aldose 1-epimerase; aldose 1-epimerase 716273 5743470 Cphy_0556 Clostridium phytofermentans ISDg aldose 1-epimerase YP_001557682.1 715212 D 357809 CDS YP_001557683.1 160878715 5743471 complement(716430..717059) 1 NC_010001.1 KEGG: smu:SMU.1673 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; uracil phosphoribosyltransferase 717059 5743471 Cphy_0557 Clostridium phytofermentans ISDg uracil phosphoribosyltransferase YP_001557683.1 716430 R 357809 CDS YP_001557684.1 160878716 5743472 717390..718490 1 NC_010001.1 PFAM: response regulator receiver; KEGG: dar:Daro_0240 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal:Hpt; response regulator receiver protein 718490 5743472 Cphy_0558 Clostridium phytofermentans ISDg response regulator receiver protein YP_001557684.1 717390 D 357809 CDS YP_001557685.1 160878717 5743473 718855..719307 1 NC_010001.1 hypothetical protein 719307 5743473 Cphy_0559 Clostridium phytofermentans ISDg hypothetical protein YP_001557685.1 718855 D 357809 CDS YP_001557686.1 160878718 5743474 719941..720960 1 NC_010001.1 PFAM: periplasmic binding protein; KEGG: cth:Cthe_1754 periplasmic binding protein; periplasmic binding protein 720960 5743474 Cphy_0560 Clostridium phytofermentans ISDg periplasmic binding protein YP_001557686.1 719941 D 357809 CDS YP_001557687.1 160878719 5743475 721033..722073 1 NC_010001.1 PFAM: transport system permease; ABC-3 protein; KEGG: ctc:CTC00784 iron(III) dicitrate transport system permease fecD; transport system permease 722073 5743475 Cphy_0561 Clostridium phytofermentans ISDg transport system permease YP_001557687.1 721033 D 357809 CDS YP_001557688.1 160878720 5743476 722075..722869 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC00783 ferric enterobactin transport ATP-binding protein fepC; ABC transporter 722869 5743476 Cphy_0562 Clostridium phytofermentans ISDg ABC transporter YP_001557688.1 722075 D 357809 CDS YP_001557689.1 160878721 5743477 723380..725623 1 NC_010001.1 PFAM: S-layer domain protein; Propeptide PepSY amd peptidase M4; KEGG: cth:Cthe_2168 propeptide, PepSY amd peptidase M4; S-layer domain-containing protein 725623 5743477 Cphy_0563 Clostridium phytofermentans ISDg S-layer domain-containing protein YP_001557689.1 723380 D 357809 CDS YP_001557690.1 160878722 5743478 726147..726944 1 NC_010001.1 KEGG: sak:SAK_0197 adaptor protein; negative regulator of genetic competence sporulation and motility-like protein 726944 5743478 Cphy_0564 Clostridium phytofermentans ISDg negative regulator of genetic competence sporulation and motility-like protein YP_001557690.1 726147 D 357809 CDS YP_001557691.1 160878723 5743479 complement(727142..728317) 1 NC_010001.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 728317 5743479 Cphy_0565 Clostridium phytofermentans ISDg transposase IS204/IS1001/IS1096/IS1165 family protein YP_001557691.1 727142 R 357809 CDS YP_001557692.1 160878724 5743480 728797..730155 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC0542 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 730155 5743480 Cphy_0566 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001557692.1 728797 D 357809 CDS YP_001557693.1 160878725 5743481 complement(730286..731383) 1 NC_010001.1 KEGG: bha:BH3294 hypothetical protein; hypothetical protein 731383 5743481 Cphy_0567 Clostridium phytofermentans ISDg hypothetical protein YP_001557693.1 730286 R 357809 CDS YP_001557694.1 160878726 5743482 complement(731604..732623) 1 NC_010001.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: apl:APL_0819 HTH-type transcriptional repressor PurR; LacI family transcriptional regulator 732623 5743482 Cphy_0568 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001557694.1 731604 R 357809 CDS YP_001557695.1 160878727 5743483 733282..734193 1 NC_010001.1 KEGG: cpf:CPF_1411 hypothetical protein; hypothetical protein 734193 5743483 Cphy_0569 Clostridium phytofermentans ISDg hypothetical protein YP_001557695.1 733282 D 357809 CDS YP_001557696.1 160878728 5743484 734224..735336 1 NC_010001.1 KEGG: cpe:CPE1200 hypothetical protein; hypothetical protein 735336 5743484 Cphy_0570 Clostridium phytofermentans ISDg hypothetical protein YP_001557696.1 734224 D 357809 CDS YP_001557697.1 160878729 5743485 735349..736362 1 NC_010001.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: bcy:Bcer98_3965 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 736362 5743485 Cphy_0571 Clostridium phytofermentans ISDg UDP-glucose 4-epimerase YP_001557697.1 735349 D 357809 CDS YP_001557698.1 160878730 5743486 complement(736501..737403) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: cth:Cthe_2212 transcriptional regulator, AraC family; AraC family transcriptional regulator 737403 5743486 Cphy_0572 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001557698.1 736501 R 357809 CDS YP_001557699.1 160878731 5743487 737574..738956 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: pac:PPA0085 periplasmic protein; extracellular solute-binding protein 738956 5743487 Cphy_0573 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001557699.1 737574 D 357809 CDS YP_001557700.1 160878732 5743488 739199..740089 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA0086 permease; binding-protein-dependent transport system inner membrane protein 740089 5743488 Cphy_0574 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557700.1 739199 D 357809 CDS YP_001557701.1 160878733 5743489 740100..740978 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA0087 permease; binding-protein-dependent transport system inner membrane protein 740978 5743489 Cphy_0575 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557701.1 740100 D 357809 CDS YP_001557702.1 160878734 5743490 740986..741162 1 NC_010001.1 hypothetical protein 741162 5743490 Cphy_0576 Clostridium phytofermentans ISDg hypothetical protein YP_001557702.1 740986 D 357809 CDS YP_001557703.1 160878735 5743491 741481..743652 1 NC_010001.1 PFAM: conserved hypothetical protein; KEGG: cpr:CPR_0537 conserved hypothetical protein TIGR02336; hypothetical protein 743652 5743491 Cphy_0577 Clostridium phytofermentans ISDg hypothetical protein YP_001557703.1 741481 D 357809 CDS YP_001557704.1 160878736 5743492 complement(743784..745598) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: bld:BLi00440 ABC transporter (permease); RBL00398; histidine kinase internal region 745598 5743492 Cphy_0578 Clostridium phytofermentans ISDg histidine kinase internal region YP_001557704.1 743784 R 357809 CDS YP_001557705.1 160878737 5743493 complement(745624..747219) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_0684 response regulator receiver protein; two component AraC family transcriptional regulator 747219 5743493 Cphy_0579 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001557705.1 745624 R 357809 CDS YP_001557706.1 160878738 5743494 747501..749027 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component; ABC transporter 749027 5743494 Cphy_0580 Clostridium phytofermentans ISDg ABC transporter YP_001557706.1 747501 D 357809 CDS YP_001557707.1 160878739 5743495 749024..750025 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: sme:SMc03000 permease ABC transporter protein; monosaccharide-transporting ATPase 750025 5743495 Cphy_0581 Clostridium phytofermentans ISDg monosaccharide-transporting ATPase YP_001557707.1 749024 D 357809 CDS YP_001557708.1 160878740 5743496 750028..751044 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: ent:Ent638_4073 inner-membrane translocator; monosaccharide-transporting ATPase 751044 5743496 Cphy_0582 Clostridium phytofermentans ISDg monosaccharide-transporting ATPase YP_001557708.1 750028 D 357809 CDS YP_001557709.1 160878741 5743497 751114..752217 1 NC_010001.1 KEGG: ret:RHE_PE00289 probable sugar ABC transporter, substrate-binding protein; sugar ABC transporter, substrate-binding protein 752217 5743497 Cphy_0583 Clostridium phytofermentans ISDg sugar ABC transporter, substrate-binding protein YP_001557709.1 751114 D 357809 CDS YP_001557710.1 160878742 5743498 752520..754019 1 NC_010001.1 KEGG: rha:RHA1_ro04091 L-arabinose isomerase; L-arabinose isomerase 754019 5743498 Cphy_0584 Clostridium phytofermentans ISDg L-arabinose isomerase YP_001557710.1 752520 D 357809 CDS YP_001557711.1 160878743 5743499 754629..756218 1 NC_010001.1 hypothetical protein 756218 5743499 Cphy_0585 Clostridium phytofermentans ISDg hypothetical protein YP_001557711.1 754629 D 357809 CDS YP_001557712.1 160878744 5743500 756187..758133 1 NC_010001.1 KEGG: tva:TVAG_289620 hypothetical protein Pfam: PspA_IM30 TFIIS_M UVR DUF526 Filament FH2 DUF593; hypothetical protein 758133 5743500 Cphy_0586 Clostridium phytofermentans ISDg hypothetical protein YP_001557712.1 756187 D 357809 CDS YP_001557713.1 160878745 5743501 758138..759193 1 NC_010001.1 hypothetical protein 759193 5743501 Cphy_0587 Clostridium phytofermentans ISDg hypothetical protein YP_001557713.1 758138 D 357809 CDS YP_001557714.1 160878746 5743502 759190..764469 1 NC_010001.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: ava:Ava_3253 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 764469 5743502 Cphy_0588 Clostridium phytofermentans ISDg DEAD/DEAH box helicase YP_001557714.1 759190 D 357809 CDS YP_001557715.1 160878747 5743503 765034..765657 1 NC_010001.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: surface protein from Gram-positive cocci anchor region; cell wall anchor domain-containing protein 765657 5743503 Cphy_0589 Clostridium phytofermentans ISDg cell wall anchor domain-containing protein YP_001557715.1 765034 D 357809 CDS YP_001557716.1 160878748 5743504 765825..766865 1 NC_010001.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: gtn:GTNG_2017 transcriptional regulator; LacI family transcriptional regulator 766865 5743504 Cphy_0590 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001557716.1 765825 D 357809 CDS YP_001557717.1 160878749 5743505 767507..769447 1 NC_010001.1 PFAM: protein of unknown function DUF1680; KEGG: csc:Csac_0717 protein of unknown function DUF1680; hypothetical protein 769447 5743505 Cphy_0591 Clostridium phytofermentans ISDg hypothetical protein YP_001557717.1 767507 D 357809 CDS YP_001557718.1 160878750 5743506 769518..770888 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC1213 sugar ABC transporter substrate-binding protein; extracellular solute-binding protein 770888 5743506 Cphy_0592 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001557718.1 769518 D 357809 CDS YP_001557719.1 160878751 5743507 771053..771979 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1214 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein 771979 5743507 Cphy_0593 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557719.1 771053 D 357809 CDS YP_001557720.1 160878752 5743508 771976..772857 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1215 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein 772857 5743508 Cphy_0594 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557720.1 771976 D 357809 CDS YP_001557721.1 160878753 5743509 773196..774245 1 NC_010001.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cno:NT01CX_0161 catabolite control protein A; LacI family transcriptional regulator 774245 5743509 Cphy_0595 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001557721.1 773196 D 357809 CDS YP_001557722.1 160878754 5743510 774242..775282 1 NC_010001.1 PFAM: conserved hypothetical protein; KEGG: oih:OB3234 hypothetical protein; hypothetical protein 775282 5743510 Cphy_0596 Clostridium phytofermentans ISDg hypothetical protein YP_001557722.1 774242 D 357809 CDS YP_001557723.1 160878755 5743511 775387..775866 1 NC_010001.1 KEGG: dsy:DSY0991 hypothetical protein; hypothetical protein 775866 5743511 Cphy_0597 Clostridium phytofermentans ISDg hypothetical protein YP_001557723.1 775387 D 357809 CDS YP_001557724.1 160878756 5743512 775882..777390 1 NC_010001.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: oih:OB3268 hypothetical protein; hypothetical protein 777390 5743512 Cphy_0598 Clostridium phytofermentans ISDg hypothetical protein YP_001557724.1 775882 D 357809 CDS YP_001557725.1 160878757 5743513 777384..778535 1 NC_010001.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC0605 oxidoreductase; oxidoreductase domain-containing protein 778535 5743513 Cphy_0599 Clostridium phytofermentans ISDg oxidoreductase domain-containing protein YP_001557725.1 777384 D 357809 CDS YP_001557726.1 160878758 5743514 778554..779642 1 NC_010001.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC3277 dehydrogenase; oxidoreductase domain-containing protein 779642 5743514 Cphy_0600 Clostridium phytofermentans ISDg oxidoreductase domain-containing protein YP_001557726.1 778554 D 357809 CDS YP_001557727.1 160878759 5743515 779904..780683 1 NC_010001.1 PFAM: polysaccharide deacetylase; KEGG: amt:Amet_1617 polysaccharide deacetylase; polysaccharide deacetylase 780683 5743515 Cphy_0601 Clostridium phytofermentans ISDg polysaccharide deacetylase YP_001557727.1 779904 D 357809 CDS YP_001557728.1 160878760 5743516 781036..781242 1 NC_010001.1 KEGG: cdf:CD2245A hypothetical protein; hypothetical protein 781242 5743516 Cphy_0602 Clostridium phytofermentans ISDg hypothetical protein YP_001557728.1 781036 D 357809 CDS YP_001557729.1 160878761 5743517 781259..784795 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cdf:CD2682 pyruvate-flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 784795 5743517 Cphy_0603 Clostridium phytofermentans ISDg pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_001557729.1 781259 D 357809 CDS YP_001557730.1 160878762 5743518 785091..786692 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY0350 hypothetical protein; methyl-accepting chemotaxis sensory transducer 786692 5743518 Cphy_0604 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001557730.1 785091 D 357809 CDS YP_001557731.1 160878763 5743519 787055..787765 1 NC_010001.1 PFAM: chemotaxis sensory transducer; KEGG: cbe:Cbei_4772 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 787765 5743519 Cphy_0605 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001557731.1 787055 D 357809 CDS YP_001557732.1 160878764 5743520 787824..788648 1 NC_010001.1 TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine phosphorylase family 2; KEGG: cdf:CD1224 purine nucleoside phosphorylase; inosine guanosine and xanthosine phosphorylase family protein 788648 5743520 Cphy_0606 Clostridium phytofermentans ISDg inosine guanosine and xanthosine phosphorylase family protein YP_001557732.1 787824 D 357809 CDS YP_001557733.1 160878765 5743521 788898..790718 1 NC_010001.1 PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: cpe:CPE0981 probable beta-N-acetylhexosaminidase; glycoside hydrolase family protein 790718 5743521 Cphy_0607 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001557733.1 788898 D 357809 CDS YP_001557734.1 160878766 5743522 complement(791082..792257) 1 NC_010001.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 792257 5743522 Cphy_0608 Clostridium phytofermentans ISDg transposase IS204/IS1001/IS1096/IS1165 family protein YP_001557734.1 791082 R 357809 CDS YP_001557735.1 160878767 5743523 complement(792393..794711) 1 NC_010001.1 KEGG: gka:GK0328 hypothetical protein; hypothetical protein 794711 5743523 Cphy_0609 Clostridium phytofermentans ISDg hypothetical protein YP_001557735.1 792393 R 357809 CDS YP_001557736.1 160878768 5743524 complement(795189..795758) 1 NC_010001.1 PFAM: regulatory protein TetR; KEGG: lin:lin0482 hypothetical protein; TetR family transcriptional regulator 795758 5743524 Cphy_0610 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001557736.1 795189 R 357809 CDS YP_001557737.1 160878769 5743525 796122..796259 1 NC_010001.1 KEGG: oih:OB3246 hypothetical protein; hypothetical protein 796259 5743525 Cphy_0611 Clostridium phytofermentans ISDg hypothetical protein YP_001557737.1 796122 D 357809 CDS YP_001557738.1 160878770 5743526 complement(796578..797663) 1 NC_010001.1 PFAM: VanZ family protein; KEGG: bcy:Bcer98_0210 VanZ family protein; VanZ family protein 797663 5743526 Cphy_0612 Clostridium phytofermentans ISDg VanZ family protein YP_001557738.1 796578 R 357809 CDS YP_001557739.1 160878771 5743527 798037..798591 1 NC_010001.1 PFAM: chemotaxis sensory transducer; KEGG: ckl:CKL_3118 predicted methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 798591 5743527 Cphy_0613 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001557739.1 798037 D 357809 CDS YP_001557740.1 160878772 5743528 798942..800231 1 NC_010001.1 PFAM: chemotaxis sensory transducer; KEGG: gur:Gura_3394 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 800231 5743528 Cphy_0614 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001557740.1 798942 D 357809 CDS YP_001557741.1 160878773 5743529 800570..801004 1 NC_010001.1 hypothetical protein 801004 5743529 Cphy_0615 Clostridium phytofermentans ISDg hypothetical protein YP_001557741.1 800570 D 357809 CDS YP_001557742.1 160878774 5743530 801007..801984 1 NC_010001.1 hypothetical protein 801984 5743530 Cphy_0616 Clostridium phytofermentans ISDg hypothetical protein YP_001557742.1 801007 D 357809 CDS YP_001557743.1 160878775 5743531 complement(802351..804156) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4963 integral membrane sensor signal transduction histidine kinase; signal transduction histidine kinase, LytS 804156 5743531 Cphy_0617 Clostridium phytofermentans ISDg signal transduction histidine kinase, LytS YP_001557743.1 802351 R 357809 CDS YP_001557744.1 160878776 5743532 complement(804146..804922) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: sgo:SGO_1175 response regulator; two component AraC family transcriptional regulator 804922 5743532 Cphy_0618 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001557744.1 804146 R 357809 CDS YP_001557745.1 160878777 5741668 805147..806538 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: amt:Amet_0896 extracellular solute-binding protein, family 1; extracellular solute-binding protein 806538 5741668 Cphy_0619 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001557745.1 805147 D 357809 CDS YP_001557746.1 160878778 5741669 806729..807646 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2403 binding-protein-dependent transport system, inner membrane component; binding-protein-dependent transport system inner membrane protein 807646 5741669 Cphy_0620 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557746.1 806729 D 357809 CDS YP_001557747.1 160878779 5741670 807636..808505 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_0898 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 808505 5741670 Cphy_0621 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001557747.1 807636 D 357809 CDS YP_001557748.1 160878780 5741671 808851..809189 1 NC_010001.1 SMART: DNA mismatch repair protein MutS domain protein; KEGG: cdf:CD3408 DNA mismatch repair protein; DNA mismatch repair protein MutS domain-containing protein 809189 5741671 Cphy_0622 Clostridium phytofermentans ISDg DNA mismatch repair protein MutS domain-containing protein YP_001557748.1 808851 D 357809 CDS YP_001557749.1 160878781 5741672 809475..810185 1 NC_010001.1 KEGG: rba:RB3971 hypothetical protein-signal peptide and transmembrane prediction; hypothetical protein 810185 5741672 Cphy_0623 Clostridium phytofermentans ISDg hypothetical protein YP_001557749.1 809475 D 357809 CDS YP_001557750.1 160878782 5741673 810523..812793 1 NC_010001.1 PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; KEGG: cth:Cthe_1838 glycoside hydrolase, family 10; endo-1,4-beta-xylanase 812793 5741673 Cphy_0624 Clostridium phytofermentans ISDg endo-1,4-beta-xylanase YP_001557750.1 810523 D 357809 CDS YP_001557751.1 160878783 5741674 complement(813011..813778) 1 NC_010001.1 PFAM: esterase; KEGG: cdf:CD2204 probable esterase; esterase 813778 5741674 Cphy_0625 Clostridium phytofermentans ISDg esterase YP_001557751.1 813011 R 357809 CDS YP_001557752.1 160878784 5741675 complement(813769..814512) 1 NC_010001.1 KEGG: lmo:lmo2433 similar to acetylesterase; hypothetical protein 814512 5741675 Cphy_0626 Clostridium phytofermentans ISDg hypothetical protein YP_001557752.1 813769 R 357809 CDS YP_001557753.1 160878785 5741676 814818..815546 1 NC_010001.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pdi:BDI_1529 hypothetical protein; phosphotransferase domain-containing protein 815546 5741676 Cphy_0627 Clostridium phytofermentans ISDg phosphotransferase domain-containing protein YP_001557753.1 814818 D 357809 CDS YP_001557754.1 160878786 5741677 815782..817113 1 NC_010001.1 KEGG: csc:Csac_1211 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; glutamine synthetase, type I 817113 5741677 Cphy_0628 Clostridium phytofermentans ISDg glutamine synthetase, type I YP_001557754.1 815782 D 357809 CDS YP_001557755.1 160878787 5741678 817143..817685 1 NC_010001.1 PFAM: ANTAR domain protein; KEGG: cbe:Cbei_4205 response regulator receiver and ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein 817685 5741678 Cphy_0629 Clostridium phytofermentans ISDg response regulator receiver/ANTAR domain-containing protein YP_001557755.1 817143 D 357809 CDS YP_001557756.1 160878788 5741679 817872..818786 1 NC_010001.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 818786 dapF 5741679 dapF Clostridium phytofermentans ISDg diaminopimelate epimerase YP_001557756.1 817872 D 357809 CDS YP_001557757.1 160878789 5741680 818903..820117 1 NC_010001.1 catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis; L,L-diaminopimelate aminotransferase 820117 5741680 Cphy_0631 Clostridium phytofermentans ISDg L,L-diaminopimelate aminotransferase YP_001557757.1 818903 D 357809 CDS YP_001557758.1 160878790 5741681 complement(820360..822993) 1 NC_010001.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cth:Cthe_2666 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase 822993 5741681 Cphy_0632 Clostridium phytofermentans ISDg P-type HAD superfamily ATPase YP_001557758.1 820360 R 357809 CDS YP_001557759.1 160878791 5741682 823692..824708 1 NC_010001.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: bcz:pE33L466_0245 possible microcin immunity protein; peptidase U61 LD-carboxypeptidase A 824708 5741682 Cphy_0633 Clostridium phytofermentans ISDg peptidase U61 LD-carboxypeptidase A YP_001557759.1 823692 D 357809 CDS YP_001557760.1 160878792 5741683 825182..825424 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bth:BT_4143 iron-sulfur cluster binding protein; 4Fe-4S ferredoxin 825424 5741683 Cphy_0634 Clostridium phytofermentans ISDg 4Fe-4S ferredoxin YP_001557760.1 825182 D 357809 CDS YP_001557761.1 160878793 5741684 825614..828028 1 NC_010001.1 PFAM: sulfatase; KEGG: btl:BALH_4730 sulfatase; sulfatase 828028 5741684 Cphy_0635 Clostridium phytofermentans ISDg sulfatase YP_001557761.1 825614 D 357809 CDS YP_001557762.1 160878794 5741685 828528..829865 1 NC_010001.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: amt:Amet_3390 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 829865 5741685 Cphy_0636 Clostridium phytofermentans ISDg aspartyl-tRNA synthetase YP_001557762.1 828528 D 357809 CDS YP_001557763.1 160878795 5741686 829957..830244 1 NC_010001.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: cth:Cthe_1033 glutamyl-tRNA(Gln) amidotransferase, C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C 830244 5741686 Cphy_0637 Clostridium phytofermentans ISDg glutamyl-tRNA(Gln) amidotransferase subunit C YP_001557763.1 829957 D 357809 CDS YP_001557764.1 160878796 5741687 830291..831775 1 NC_010001.1 KEGG: cth:Cthe_1032 glutamyl-tRNA(Gln) amidotransferase, A subunit; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; glutamyl-tRNA(Gln) amidotransferase subunit A 831775 5741687 Cphy_0638 Clostridium phytofermentans ISDg glutamyl-tRNA(Gln) amidotransferase subunit A YP_001557764.1 830291 D 357809 CDS YP_001557765.1 160878797 5741688 831997..833433 1 NC_010001.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: csc:Csac_0910 glutamyl-tRNA(Gln) amidotransferase, B subunit; glutamyl-tRNA(Gln) amidotransferase subunit B 833433 5741688 Cphy_0639 Clostridium phytofermentans ISDg glutamyl-tRNA(Gln) amidotransferase subunit B YP_001557765.1 831997 D 357809 CDS YP_001557766.1 160878798 5741689 833739..834131 1 NC_010001.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 834131 5741689 Cphy_0640 Clostridium phytofermentans ISDg type IV pilus assembly PilZ YP_001557766.1 833739 D 357809 CDS YP_001557767.1 160878799 5741690 complement(834256..835263) 1 NC_010001.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: tde:TDE0027 DHH superfamily protein, subfamily 1; phosphoesterase domain-containing protein 835263 5741690 Cphy_0641 Clostridium phytofermentans ISDg phosphoesterase domain-containing protein YP_001557767.1 834256 R 357809 CDS YP_001557768.1 160878800 5741691 complement(835392..835676) 1 NC_010001.1 KEGG: cac:CAC3685 predicted membrane protein; membrane protein 835676 5741691 Cphy_0642 Clostridium phytofermentans ISDg membrane protein YP_001557768.1 835392 R 357809 CDS YP_001557769.1 160878801 5741692 836075..837631 1 NC_010001.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 837631 purH 5741692 purH Clostridium phytofermentans ISDg bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001557769.1 836075 D 357809 CDS YP_001557770.1 160878802 5741693 complement(837749..837949) 1 NC_010001.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sae:NWMN_1313 major cold-shock protein CspA; cold-shock DNA-binding domain-containing protein 837949 5741693 Cphy_0644 Clostridium phytofermentans ISDg cold-shock DNA-binding domain-containing protein YP_001557770.1 837749 R 357809 CDS YP_001557771.1 160878803 5741694 838382..841360 1 NC_010001.1 PFAM: peptidase M16 domain protein; Peptidase M16C associated domain protein; KEGG: cbf:CLI_3481 peptidase; peptidase M16C associated domain-containing protein 841360 5741694 Cphy_0645 Clostridium phytofermentans ISDg peptidase M16C associated domain-containing protein YP_001557771.1 838382 D 357809 CDS YP_001557772.1 160878804 5741695 841551..842468 1 NC_010001.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: bha:BH1367 GTP-binding protein (Era/ThdF family); GTP-binding protein Era 842468 5741695 Cphy_0646 Clostridium phytofermentans ISDg GTP-binding protein Era YP_001557772.1 841551 D 357809 CDS YP_001557773.1 160878805 5743763 842815..843555 1 NC_010001.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: amt:Amet_3024 DNA repair protein RecO; DNA repair protein RecO 843555 5743763 Cphy_0647 Clostridium phytofermentans ISDg DNA repair protein RecO YP_001557773.1 842815 D 357809 CDS YP_001557774.1 160878806 5743764 843851..845239 1 NC_010001.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 845239 5743764 Cphy_0648 Clostridium phytofermentans ISDg glycyl-tRNA synthetase YP_001557774.1 843851 D 357809 CDS YP_001557775.1 160878807 5743765 complement(845450..846625) 1 NC_010001.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 846625 5743765 Cphy_0649 Clostridium phytofermentans ISDg transposase IS204/IS1001/IS1096/IS1165 family protein YP_001557775.1 845450 R 357809 CDS YP_001557776.1 160878808 5743766 complement(846752..847411) 1 NC_010001.1 PFAM: lipolytic protein G-D-S-L family; KEGG: csc:Csac_0779 lipolytic enzyme, G-D-S-L family; GDSL family lipase 847411 5743766 Cphy_0650 Clostridium phytofermentans ISDg GDSL family lipase YP_001557776.1 846752 R 357809 CDS YP_001557777.1 160878809 5743767 848249..850870 1 NC_010001.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 850870 5743767 Cphy_0651 Clostridium phytofermentans ISDg pyruvate phosphate dikinase YP_001557777.1 848249 D 357809 CDS YP_001557778.1 160878810 5743768 complement(850982..851158) 1 NC_010001.1 KEGG: bfs:BF2692 hypothetical membrane protein; hypothetical protein 851158 5743768 Cphy_0652 Clostridium phytofermentans ISDg hypothetical protein YP_001557778.1 850982 R 357809 CDS YP_001557779.1 160878811 5743769 851671..852957 1 NC_010001.1 PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ooe:OEOE_1670 H+/gluconate symporter or related permease; citrate transporter 852957 5743769 Cphy_0653 Clostridium phytofermentans ISDg citrate transporter YP_001557779.1 851671 D 357809 CDS YP_001557780.1 160878812 5743770 853053..855179 1 NC_010001.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: tte:TTE2591 N-methylhydaintoinase A; hydantoinase/oxoprolinase 855179 5743770 Cphy_0654 Clostridium phytofermentans ISDg hydantoinase/oxoprolinase YP_001557780.1 853053 D 357809 CDS YP_001557781.1 160878813 5743771 855418..856191 1 NC_010001.1 PFAM: regulatory protein GntR HTH; KEGG: cbe:Cbei_4085 transcriptional regulator, GntR family; GntR family transcriptional regulator 856191 5743771 Cphy_0655 Clostridium phytofermentans ISDg GntR family transcriptional regulator YP_001557781.1 855418 D 357809 CDS YP_001557782.1 160878814 5743772 856268..857362 1 NC_010001.1 KEGG: pat:Patl_3646 phosphomannose isomerase-like; phosphomannose isomerase-like protein 857362 5743772 Cphy_0656 Clostridium phytofermentans ISDg phosphomannose isomerase-like protein YP_001557782.1 856268 D 357809 CDS YP_001557783.1 160878815 5743773 857904..858521 1 NC_010001.1 PFAM: regulatory protein TetR; KEGG: tde:TDE0332 transcriptional regulator, TetR family; TetR family transcriptional regulator 858521 5743773 Cphy_0657 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001557783.1 857904 D 357809 CDS YP_001557784.1 160878816 5743774 858547..859488 1 NC_010001.1 KEGG: pmy:Pmen_4204 hypothetical protein; hypothetical protein 859488 5743774 Cphy_0658 Clostridium phytofermentans ISDg hypothetical protein YP_001557784.1 858547 D 357809 CDS YP_001557785.1 160878817 5743775 859616..860446 1 NC_010001.1 hypothetical protein 860446 5743775 Cphy_0659 Clostridium phytofermentans ISDg hypothetical protein YP_001557785.1 859616 D 357809 CDS YP_001557786.1 160878818 5743776 860487..861326 1 NC_010001.1 PFAM: beta-lactamase domain protein; KEGG: tma:TM1295 hypothetical protein; beta-lactamase domain-containing protein 861326 5743776 Cphy_0660 Clostridium phytofermentans ISDg beta-lactamase domain-containing protein YP_001557786.1 860487 D 357809 CDS YP_001557787.1 160878819 5743777 861319..862434 1 NC_010001.1 KEGG: sus:Acid_2910 hypothetical protein; esterase/lipase-like protein 862434 5743777 Cphy_0661 Clostridium phytofermentans ISDg esterase/lipase-like protein YP_001557787.1 861319 D 357809 CDS YP_001557788.1 160878820 5743778 862473..864716 1 NC_010001.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: cth:Cthe_1256 glycoside hydrolase, family 3-like protein; glycoside hydrolase family 3 864716 5743778 Cphy_0662 Clostridium phytofermentans ISDg glycoside hydrolase family 3 YP_001557788.1 862473 D 357809 CDS YP_001557789.1 160878821 5743779 complement(864876..866546) 1 NC_010001.1 KEGG: csc:Csac_0358 ABC-type sugar transport system periplasmic component-like protein; ABC-type sugar transport system periplasmic component-like protein 866546 5743779 Cphy_0663 Clostridium phytofermentans ISDg ABC-type sugar transport system periplasmic component-like protein YP_001557789.1 864876 R 357809 CDS YP_001557790.1 160878822 5743780 866795..867769 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein 867769 5743780 Cphy_0664 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557790.1 866795 D 357809 CDS YP_001557791.1 160878823 5743781 867787..868674 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0362 polysaccharide ABC transporter permease; binding-protein-dependent transport systems inner membrane component 868674 5743781 Cphy_0665 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001557791.1 867787 D 357809 CDS YP_001557792.1 160878824 5743782 868759..871452 1 NC_010001.1 KEGG: bvu:BVU_0177 glycoside hydrolase family 28; hypothetical protein 871452 5743782 Cphy_0666 Clostridium phytofermentans ISDg hypothetical protein YP_001557792.1 868759 D 357809 CDS YP_001557793.1 160878825 5743783 871581..872183 1 NC_010001.1 PFAM: regulatory protein TetR; KEGG: sus:Acid_2363 transcriptional regulator, TetR family; TetR family transcriptional regulator 872183 5743783 Cphy_0667 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001557793.1 871581 D 357809 CDS YP_001557794.1 160878826 5743784 873253..873825 1 NC_010001.1 hypothetical protein 873825 5743784 Cphy_0668 Clostridium phytofermentans ISDg hypothetical protein YP_001557794.1 873253 D 357809 CDS YP_001557795.1 160878827 5743785 873964..874098 1 NC_010001.1 KEGG: bay:RBAM_036080 GalE; UDP-glucose 4-epimerase-like protein 874098 5743785 Cphy_0669 Clostridium phytofermentans ISDg UDP-glucose 4-epimerase-like protein YP_001557795.1 873964 D 357809 CDS YP_001557796.1 160878828 5743786 874314..874826 1 NC_010001.1 KEGG: pdi:BDI_2612 hypothetical protein; hypothetical protein 874826 5743786 Cphy_0670 Clostridium phytofermentans ISDg hypothetical protein YP_001557796.1 874314 D 357809 CDS YP_001557797.1 160878829 5743787 875177..876115 1 NC_010001.1 PFAM: Methyltransferase type 11; KEGG: rca:Rcas_1539 magnesium protoporphyrin O-methyltransferase; methyltransferase type 11 876115 5743787 Cphy_0671 Clostridium phytofermentans ISDg methyltransferase type 11 YP_001557797.1 875177 D 357809 CDS YP_001557798.1 160878830 5743788 876268..876849 1 NC_010001.1 KEGG: ckl:CKL_2492 hypothetical protein; TetR family transcriptional regulator 876849 5743788 Cphy_0672 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001557798.1 876268 D 357809 CDS YP_001557799.1 160878831 5743789 876846..877607 1 NC_010001.1 PFAM: Abortive infection protein; KEGG: cef:CE0449 hypothetical protein; abortive infection protein 877607 5743789 Cphy_0673 Clostridium phytofermentans ISDg abortive infection protein YP_001557799.1 876846 D 357809 CDS YP_001557800.1 160878832 5743790 877705..878502 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bsu:BG12132 similar to transcriptional regulator (AraC/XylS family); AraC family transcriptional regulator 878502 5743790 Cphy_0674 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001557800.1 877705 D 357809 CDS YP_001557801.1 160878833 5743791 879014..879808 1 NC_010001.1 KEGG: dsy:DSY2128 hypothetical protein; hypothetical protein 879808 5743791 Cphy_0675 Clostridium phytofermentans ISDg hypothetical protein YP_001557801.1 879014 D 357809 CDS YP_001557802.1 160878834 5743792 880172..880723 1 NC_010001.1 KEGG: bcz:BCZK1145 acetyltransferase, GNAT family; hypothetical protein 880723 5743792 Cphy_0676 Clostridium phytofermentans ISDg hypothetical protein YP_001557802.1 880172 D 357809 CDS YP_001557803.1 160878835 5743793 880830..883178 1 NC_010001.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: efa:EF1519 cation-transporting ATPase, E1-E2 family; P-type HAD superfamily ATPase 883178 5743793 Cphy_0677 Clostridium phytofermentans ISDg P-type HAD superfamily ATPase YP_001557803.1 880830 D 357809 CDS YP_001557804.1 160878836 5743794 883324..883950 1 NC_010001.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: sep:SE1109 hypothetical protein; phosphoesterase PA-phosphatase related 883950 5743794 Cphy_0678 Clostridium phytofermentans ISDg phosphoesterase PA-phosphatase related YP_001557804.1 883324 D 357809 CDS YP_001557805.1 160878837 5743795 884053..884589 1 NC_010001.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sth:STH1741 RNA polymerase ECF-type sigma factor; ECF subfamily RNA polymerase sigma-24 factor 884589 5743795 Cphy_0679 Clostridium phytofermentans ISDg ECF subfamily RNA polymerase sigma-24 factor YP_001557805.1 884053 D 357809 CDS YP_001557806.1 160878838 5743796 884854..885786 1 NC_010001.1 KEGG: ctc:CTC00666 hypothetical protein; hypothetical protein 885786 5743796 Cphy_0680 Clostridium phytofermentans ISDg hypothetical protein YP_001557806.1 884854 D 357809 CDS YP_001557807.1 160878839 5743797 885976..886977 1 NC_010001.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: cth:Cthe_1803 cobalamin (vitamin B12) biosynthesis CbiM protein; cobalamin (vitamin B12) biosynthesis CbiM protein 886977 5743797 Cphy_0681 Clostridium phytofermentans ISDg cobalamin (vitamin B12) biosynthesis CbiM protein YP_001557807.1 885976 D 357809 CDS YP_001557808.1 160878840 5743798 complement(887062..888000) 1 NC_010001.1 PFAM: Urea transporter; KEGG: ssp:SSP0266 hypothetical protein; Urea transporter 888000 5743798 Cphy_0682 Clostridium phytofermentans ISDg Urea transporter YP_001557808.1 887062 R 357809 CDS YP_001557809.1 160878841 5743799 complement(888100..888924) 1 NC_010001.1 PFAM: Urease accessory protein UreD; KEGG: bca:BCE_3658 urease accessory protein UreD; urease accessory protein UreD 888924 5743799 Cphy_0683 Clostridium phytofermentans ISDg urease accessory protein UreD YP_001557809.1 888100 R 357809 CDS YP_001557810.1 160878842 5743800 complement(888928..889539) 1 NC_010001.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: bca:BCE_3659 urease accessory protein UreG; urease accessory protein UreG 889539 5743800 Cphy_0684 Clostridium phytofermentans ISDg urease accessory protein UreG YP_001557810.1 888928 R 357809 CDS YP_001557811.1 160878843 5743801 complement(889606..890292) 1 NC_010001.1 PFAM: Urease accessory protein UreF; KEGG: gka:GK1928 urease accessory protein; urease accessory protein UreF 890292 5743801 Cphy_0685 Clostridium phytofermentans ISDg urease accessory protein UreF YP_001557811.1 889606 R 357809 CDS YP_001557812.1 160878844 5743802 complement(890285..890740) 1 NC_010001.1 involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 890740 ureE 5743802 ureE Clostridium phytofermentans ISDg urease accessory protein UreE YP_001557812.1 890285 R 357809 CDS YP_001557813.1 160878845 5743803 complement(890756..892468) 1 NC_010001.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 892468 ureC 5743803 ureC Clostridium phytofermentans ISDg urease subunit alpha YP_001557813.1 890756 R 357809 CDS YP_001557814.1 160878846 5743804 complement(892470..892790) 1 NC_010001.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta 892790 ureB 5743804 ureB Clostridium phytofermentans ISDg urease subunit beta YP_001557814.1 892470 R 357809 CDS YP_001557815.1 160878847 5743805 complement(892809..893111) 1 NC_010001.1 KEGG: gka:GK1932 urease gamma subunit; TIGRFAM: urease, gamma subunit; PFAM: Urease gamma subunit region; urease subunit gamma 893111 5743805 Cphy_0689 Clostridium phytofermentans ISDg urease subunit gamma YP_001557815.1 892809 R 357809 CDS YP_001557816.1 160878848 5743806 893808..894158 1 NC_010001.1 PFAM: protein of unknown function DUF156; KEGG: dsy:DSY0389 hypothetical protein; hypothetical protein 894158 5743806 Cphy_0690 Clostridium phytofermentans ISDg hypothetical protein YP_001557816.1 893808 D 357809 CDS YP_001557817.1 160878849 5743807 894200..894973 1 NC_010001.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cth:Cthe_1802 cobalt ABC transporter, inner membrane subunit CbiQ; cobalt ABC transporter permease 894973 5743807 Cphy_0691 Clostridium phytofermentans ISDg cobalt ABC transporter permease YP_001557817.1 894200 D 357809 CDS YP_001557818.1 160878850 5743808 895224..895958 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1801 ABC transporter related protein; ABC transporter 895958 5743808 Cphy_0692 Clostridium phytofermentans ISDg ABC transporter YP_001557818.1 895224 D 357809 CDS YP_001557819.1 160878851 5743809 complement(896088..896864) 1 NC_010001.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bfr:BF1755 hypothetical protein; endonuclease/exonuclease/phosphatase 896864 5743809 Cphy_0693 Clostridium phytofermentans ISDg endonuclease/exonuclease/phosphatase YP_001557819.1 896088 R 357809 CDS YP_001557820.1 160878852 5743810 complement(896904..900245) 1 NC_010001.1 KEGG: efa:EF1239 hypothetical protein; hypothetical protein 900245 5743810 Cphy_0694 Clostridium phytofermentans ISDg hypothetical protein YP_001557820.1 896904 R 357809 CDS YP_001557821.1 160878853 5743811 900644..901510 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2725 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 901510 5743811 Cphy_0695 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557821.1 900644 D 357809 CDS YP_001557822.1 160878854 5743812 901526..902437 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2724 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 902437 5743812 Cphy_0696 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557822.1 901526 D 357809 CDS YP_001557823.1 160878855 5743813 902506..904050 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: lmf:LMOf2365_2031 ABC transporter, substrate-binding protein; extracellular solute-binding protein 904050 5743813 Cphy_0697 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001557823.1 902506 D 357809 CDS YP_001557824.1 160878856 5743814 904124..905161 1 NC_010001.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cno:NT01CX_0963 catabolite control protein A; LacI family transcriptional regulator 905161 5743814 Cphy_0698 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001557824.1 904124 D 357809 CDS YP_001557825.1 160878857 5743815 905298..907529 1 NC_010001.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: efa:EF1238 glycosyl hydrolase, family 3; glycoside hydrolase family 3 907529 5743815 Cphy_0699 Clostridium phytofermentans ISDg glycoside hydrolase family 3 YP_001557825.1 905298 D 357809 CDS YP_001557826.1 160878858 5743816 complement(907805..908227) 1 NC_010001.1 PFAM: protein of unknown function DUF296; KEGG: ctc:CTC01209 hypothetical protein; hypothetical protein 908227 5743816 Cphy_0700 Clostridium phytofermentans ISDg hypothetical protein YP_001557826.1 907805 R 357809 CDS YP_001557827.1 160878859 5743817 908541..909215 1 NC_010001.1 KEGG: swo:Swol_2178 hypothetical protein; hypothetical protein 909215 5743817 Cphy_0701 Clostridium phytofermentans ISDg hypothetical protein YP_001557827.1 908541 D 357809 CDS YP_001557828.1 160878860 5743818 909243..909911 1 NC_010001.1 KEGG: swo:Swol_2179 hypothetical protein; hypothetical protein 909911 5743818 Cphy_0702 Clostridium phytofermentans ISDg hypothetical protein YP_001557828.1 909243 D 357809 CDS YP_001557829.1 160878861 5743819 909941..911932 1 NC_010001.1 PFAM: Spore coat protein CotH; KEGG: mla:Mlab_1597 hypothetical protein; spore coat protein CotH 911932 5743819 Cphy_0703 Clostridium phytofermentans ISDg spore coat protein CotH YP_001557829.1 909941 D 357809 CDS YP_001557830.1 160878862 5743820 911972..912658 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE0774 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; two component transcriptional regulator 912658 5743820 Cphy_0704 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001557830.1 911972 D 357809 CDS YP_001557831.1 160878863 5743821 912662..913960 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cpf:CPF_2640 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 913960 5743821 Cphy_0705 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001557831.1 912662 D 357809 CDS YP_001557832.1 160878864 5743822 914234..914629 1 NC_010001.1 PFAM: LrgA family protein; KEGG: ckl:CKL_2031 hypothetical protein; LrgA family protein 914629 5743822 Cphy_0706 Clostridium phytofermentans ISDg LrgA family protein YP_001557832.1 914234 D 357809 CDS YP_001557833.1 160878865 5743823 914626..915318 1 NC_010001.1 PFAM: LrgB family protein; KEGG: cbe:Cbei_5006 LrgB family protein; LrgB family protein 915318 5743823 Cphy_0707 Clostridium phytofermentans ISDg LrgB family protein YP_001557833.1 914626 D 357809 CDS YP_001557834.1 160878866 5743824 915405..919550 1 NC_010001.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: dsy:DSY3774 hypothetical protein; DEAD/DEAH box helicase 919550 5743824 Cphy_0708 Clostridium phytofermentans ISDg DEAD/DEAH box helicase YP_001557834.1 915405 D 357809 CDS YP_001557835.1 160878867 5743825 complement(919637..920515) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bcl:ABC3285 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 920515 5743825 Cphy_0709 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001557835.1 919637 R 357809 CDS YP_001557836.1 160878868 5743826 920894..921913 1 NC_010001.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: bth:BT_0730 mRNA-binding protein; NAD-dependent epimerase/dehydratase 921913 5743826 Cphy_0710 Clostridium phytofermentans ISDg NAD-dependent epimerase/dehydratase YP_001557836.1 920894 D 357809 CDS YP_001557837.1 160878869 5743827 complement(922139..924019) 1 NC_010001.1 PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: tde:TDE1730 glycosyl hydrolase, family 2; glycoside hydrolase family protein 924019 5743827 Cphy_0711 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001557837.1 922139 R 357809 CDS YP_001557838.1 160878870 5743828 924369..925250 1 NC_010001.1 KEGG: cpf:CPF_0825 hypothetical protein; hypothetical protein 925250 5743828 Cphy_0712 Clostridium phytofermentans ISDg hypothetical protein YP_001557838.1 924369 D 357809 CDS YP_001557839.1 160878871 5743829 925284..926060 1 NC_010001.1 PFAM: zinc/iron permease; KEGG: cbf:CLI_1259 zinc transporter, ZIP family; zinc/iron permease 926060 5743829 Cphy_0713 Clostridium phytofermentans ISDg zinc/iron permease YP_001557839.1 925284 D 357809 CDS YP_001557840.1 160878872 5743830 926191..926694 1 NC_010001.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: tte:TTE2373 transcription elongation factor; GreA/GreB family elongation factor 926694 5743830 Cphy_0714 Clostridium phytofermentans ISDg GreA/GreB family elongation factor YP_001557840.1 926191 D 357809 CDS YP_001557841.1 160878873 5743831 926840..927283 1 NC_010001.1 hypothetical protein 927283 5743831 Cphy_0715 Clostridium phytofermentans ISDg hypothetical protein YP_001557841.1 926840 D 357809 CDS YP_001557842.1 160878874 5743832 927316..929520 1 NC_010001.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: dsy:DSY2459 hypothetical protein; SecD/SecF family protein-export membrane protein 929520 5743832 Cphy_0716 Clostridium phytofermentans ISDg SecD/SecF family protein-export membrane protein YP_001557842.1 927316 D 357809 CDS YP_001557843.1 160878875 5743833 929781..930629 1 NC_010001.1 PFAM: protein of unknown function DUF368; KEGG: cth:Cthe_2510 protein of unknown function DUF368; hypothetical protein 930629 5743833 Cphy_0717 Clostridium phytofermentans ISDg hypothetical protein YP_001557843.1 929781 D 357809 CDS YP_001557844.1 160878876 5743834 complement(931839..932423) 1 NC_010001.1 KEGG: pin:Ping_0445 membrane protein involved in colicin uptake-like protein; hypothetical protein 932423 5743834 Cphy_0718 Clostridium phytofermentans ISDg hypothetical protein YP_001557844.1 931839 R 357809 CDS YP_001557845.1 160878877 5743835 complement(933494..934186) 1 NC_010001.1 PFAM: protein of unknown function DUF421; KEGG: dsy:DSY1538 hypothetical protein; hypothetical protein 934186 5743835 Cphy_0719 Clostridium phytofermentans ISDg hypothetical protein YP_001557845.1 933494 R 357809 CDS YP_001557846.1 160878878 5743836 complement(934410..934784) 1 NC_010001.1 KEGG: ret:RHE_PC00112 hypothetical protein; flavin-nucleotide-binding protein-like protein 934784 5743836 Cphy_0720 Clostridium phytofermentans ISDg flavin-nucleotide-binding protein-like protein YP_001557846.1 934410 R 357809 CDS YP_001557847.1 160878879 5743837 934969..936231 1 NC_010001.1 KEGG: rno:305567 similar to Hypothetical protein CBG23547 (predicted); hypothetical protein 936231 5743837 Cphy_0721 Clostridium phytofermentans ISDg hypothetical protein YP_001557847.1 934969 D 357809 CDS YP_001557848.1 160878880 5743838 936471..936635 1 NC_010001.1 PFAM: protein of unknown function DUF1540; KEGG: cbe:Cbei_3713 protein of unknown function DUF1540; hypothetical protein 936635 5743838 Cphy_0722 Clostridium phytofermentans ISDg hypothetical protein YP_001557848.1 936471 D 357809 CDS YP_001557849.1 160878881 5743839 complement(936761..937480) 1 NC_010001.1 hypothetical protein 937480 5743839 Cphy_0723 Clostridium phytofermentans ISDg hypothetical protein YP_001557849.1 936761 R 357809 CDS YP_001557850.1 160878882 5743840 complement(937631..938890) 1 NC_010001.1 PFAM: NLP/P60 protein; SH3 type 3 domain protein; KEGG: lsa:LSA0106 hypothetical cell surface protein precursor; NLP/P60 protein 938890 5743840 Cphy_0724 Clostridium phytofermentans ISDg NLP/P60 protein YP_001557850.1 937631 R 357809 CDS YP_001557851.1 160878883 5743841 complement(939094..940941) 1 NC_010001.1 hypothetical protein 940941 5743841 Cphy_0725 Clostridium phytofermentans ISDg hypothetical protein YP_001557851.1 939094 R 357809 CDS YP_001557852.1 160878884 5743842 941104..941436 1 NC_010001.1 PFAM: arsenate reductase and related; KEGG: cno:NT01CX_2298 arsenate reductase-like protein; arsenate reductase 941436 5743842 Cphy_0726 Clostridium phytofermentans ISDg arsenate reductase YP_001557852.1 941104 D 357809 CDS YP_001557853.1 160878885 5743843 941610..942236 1 NC_010001.1 PFAM: protein of unknown function DUF161; KEGG: cbe:Cbei_3126 membrane -like protein; hypothetical protein 942236 5743843 Cphy_0727 Clostridium phytofermentans ISDg hypothetical protein YP_001557853.1 941610 D 357809 CDS YP_001557854.1 160878886 5743844 complement(942250..942648) 1 NC_010001.1 hypothetical protein 942648 5743844 Cphy_0728 Clostridium phytofermentans ISDg hypothetical protein YP_001557854.1 942250 R 357809 CDS YP_001557855.1 160878887 5743845 complement(943159..943824) 1 NC_010001.1 TIGRFAM: proton-coupled thiamine transporter YuaJ; PFAM: Beta tubulin, autoregulation binding site; KEGG: tte:TTE2512 hypothetical protein; proton-coupled thiamine transporter YuaJ 943824 5743845 Cphy_0729 Clostridium phytofermentans ISDg proton-coupled thiamine transporter YuaJ YP_001557855.1 943159 R 357809 CDS YP_001557856.1 160878888 5743846 complement(944280..945086) 1 NC_010001.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_4501 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 945086 5743846 Cphy_0730 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001557856.1 944280 R 357809 CDS YP_001557857.1 160878889 5743847 945272..946234 1 NC_010001.1 PFAM: transport system permease; KEGG: bcl:ABC2895 enterochelin ABC transporter permease; transport system permease 946234 5743847 Cphy_0731 Clostridium phytofermentans ISDg transport system permease YP_001557857.1 945272 D 357809 CDS YP_001557858.1 160878890 5743848 946231..947199 1 NC_010001.1 PFAM: transport system permease; KEGG: bcy:Bcer98_0360 transport system permease; transport system permease 947199 5743848 Cphy_0732 Clostridium phytofermentans ISDg transport system permease YP_001557858.1 946231 D 357809 CDS YP_001557859.1 160878891 5743849 947196..947954 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_0361 ABC transporter-related protein; ABC transporter 947954 5743849 Cphy_0733 Clostridium phytofermentans ISDg ABC transporter YP_001557859.1 947196 D 357809 CDS YP_001557860.1 160878892 5743850 948342..949388 1 NC_010001.1 PFAM: periplasmic binding protein; KEGG: bcy:Bcer98_0362 periplasmic binding protein; periplasmic binding protein 949388 5743850 Cphy_0734 Clostridium phytofermentans ISDg periplasmic binding protein YP_001557860.1 948342 D 357809 CDS YP_001557861.1 160878893 5743851 complement(949585..950220) 1 NC_010001.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: dsy:DSY1195 hypothetical protein; redoxin domain-containing protein 950220 5743851 Cphy_0735 Clostridium phytofermentans ISDg redoxin domain-containing protein YP_001557861.1 949585 R 357809 CDS YP_001557862.1 160878894 5743852 complement(950367..951035) 1 NC_010001.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dsy:DSY1196 probable cytochrome c biogenesis protein CcdA; cytochrome c biogenesis protein transmembrane region 951035 5743852 Cphy_0736 Clostridium phytofermentans ISDg cytochrome c biogenesis protein transmembrane region YP_001557862.1 950367 R 357809 CDS YP_001557863.1 160878895 5743853 951365..951799 1 NC_010001.1 PFAM: Rhodanese domain protein; KEGG: cbh:CLC_1184 phage shock protein; rhodanese domain-containing protein 951799 5743853 Cphy_0737 Clostridium phytofermentans ISDg rhodanese domain-containing protein YP_001557863.1 951365 D 357809 CDS YP_001557864.1 160878896 5743854 complement(951910..952290) 1 NC_010001.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: cbe:Cbei_0557 transcriptional regulator, MerR family; MerR family transcriptional regulator 952290 5743854 Cphy_0738 Clostridium phytofermentans ISDg MerR family transcriptional regulator YP_001557864.1 951910 R 357809 CDS YP_001557865.1 160878897 5743855 952692..953006 1 NC_010001.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dsy:DSY2429 hypothetical protein; thioredoxin 953006 5743855 Cphy_0739 Clostridium phytofermentans ISDg thioredoxin YP_001557865.1 952692 D 357809 CDS YP_001557866.1 160878898 5743856 complement(953159..953833) 1 NC_010001.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: cdf:CD0629 transcriptional regulator; Crp/FNR family transcriptional regulator 953833 5743856 Cphy_0740 Clostridium phytofermentans ISDg Crp/FNR family transcriptional regulator YP_001557866.1 953159 R 357809 CDS YP_001557867.1 160878899 5743857 954274..956016 1 NC_010001.1 TIGRFAM: pyruvate kinase; PFAM: PEP-utilising protein mobile region; Pyruvate kinase barrel; Pyruvate kinase alpha/beta; KEGG: csc:Csac_1831 pyruvate kinase; pyruvate kinase 956016 5743857 Cphy_0741 Clostridium phytofermentans ISDg pyruvate kinase YP_001557867.1 954274 D 357809 CDS YP_001557868.1 160878900 5743858 complement(956207..956944) 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: lmf:LMOf2365_2658 DNA-binding response regulator KdpE; two component transcriptional regulator 956944 5743858 Cphy_0742 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001557868.1 956207 R 357809 CDS YP_001557869.1 160878901 5743859 complement(957026..958054) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dsy:DSY4737 hypothetical protein; integral membrane sensor signal transduction histidine kinase 958054 5743859 Cphy_0743 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001557869.1 957026 R 357809 CDS YP_001557870.1 160878902 5743860 958422..960350 1 NC_010001.1 KEGG: csc:Csac_0633 ATP-dependent endonuclease of the OLD family-like protein; ATP-dependent OLD family endonuclease 960350 5743860 Cphy_0744 Clostridium phytofermentans ISDg ATP-dependent OLD family endonuclease YP_001557870.1 958422 D 357809 CDS YP_001557871.1 160878903 5743861 960533..961483 1 NC_010001.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: cbe:Cbei_2532 peptidase U61, LD-carboxypeptidase A; peptidase U61 LD-carboxypeptidase A 961483 5743861 Cphy_0745 Clostridium phytofermentans ISDg peptidase U61 LD-carboxypeptidase A YP_001557871.1 960533 D 357809 CDS YP_001557872.1 160878904 5743862 961569..962723 1 NC_010001.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: cth:Cthe_0898 metal dependent phosphohydrolase; metal dependent phosphohydrolase 962723 5743862 Cphy_0746 Clostridium phytofermentans ISDg metal dependent phosphohydrolase YP_001557872.1 961569 D 357809 CDS YP_001557873.1 160878905 5743863 962917..963900 1 NC_010001.1 TIGRFAM: C_GCAxxG_C_C family protein; PFAM: GCN5-related N-acetyltransferase; KEGG: bcl:ABC4050 hypothetical protein; C_GCAxxG_C_C family protein 963900 5743863 Cphy_0747 Clostridium phytofermentans ISDg C_GCAxxG_C_C family protein YP_001557873.1 962917 D 357809 CDS YP_001557874.1 160878906 5743864 964360..966318 1 NC_010001.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: cbe:Cbei_0293 threonyl-tRNA synthetase; threonyl-tRNA synthetase 966318 5743864 Cphy_0748 Clostridium phytofermentans ISDg threonyl-tRNA synthetase YP_001557874.1 964360 D 357809 CDS YP_001557875.1 160878907 5743865 966486..968486 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbf:CLI_0474 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 968486 5743865 Cphy_0749 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001557875.1 966486 D 357809 CDS YP_001557876.1 160878908 5743866 968580..969635 1 NC_010001.1 PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; KEGG: cth:Cthe_2739 trigger factor; peptidylprolyl isomerase FKBP-type 969635 5743866 Cphy_0750 Clostridium phytofermentans ISDg peptidylprolyl isomerase FKBP-type YP_001557876.1 968580 D 357809 CDS YP_001557877.1 160878909 5743867 969857..971278 1 NC_010001.1 PFAM: GerA spore germination protein; KEGG: cpe:CPE0984 stage V sporulation protein AF; GerA spore germination protein 971278 5743867 Cphy_0751 Clostridium phytofermentans ISDg GerA spore germination protein YP_001557877.1 969857 D 357809 CDS YP_001557878.1 160878910 5743868 971491..972207 1 NC_010001.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 972207 deoD 5743868 deoD Clostridium phytofermentans ISDg purine nucleoside phosphorylase YP_001557878.1 971491 D 357809 CDS YP_001557879.1 160878911 5743869 972312..973007 1 NC_010001.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 973007 5743869 Cphy_0753 Clostridium phytofermentans ISDg deoxyribose-phosphate aldolase YP_001557879.1 972312 D 357809 CDS YP_001557880.1 160878912 5743870 973056..973583 1 NC_010001.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; Cytidine and deoxycytidylate deaminase zinc-binding domain protein; KEGG: cth:Cthe_1582 cytidine deaminase; cytidine deaminase 973583 5743870 Cphy_0754 Clostridium phytofermentans ISDg cytidine deaminase YP_001557880.1 973056 D 357809 CDS YP_001557881.1 160878913 5743871 973946..975109 1 NC_010001.1 PFAM: basic membrane lipoprotein; KEGG: dsy:DSY1171 hypothetical protein; basic membrane lipoprotein 975109 5743871 Cphy_0755 Clostridium phytofermentans ISDg basic membrane lipoprotein YP_001557881.1 973946 D 357809 CDS YP_001557882.1 160878914 5743872 975211..976740 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1170 hypothetical protein; ABC transporter 976740 5743872 Cphy_0756 Clostridium phytofermentans ISDg ABC transporter YP_001557882.1 975211 D 357809 CDS YP_001557883.1 160878915 5743873 976744..978171 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: dsy:DSY1169 hypothetical protein; inner-membrane translocator 978171 5743873 Cphy_0757 Clostridium phytofermentans ISDg inner-membrane translocator YP_001557883.1 976744 D 357809 CDS YP_001557884.1 160878916 5743874 978171..979124 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: dsy:DSY1168 hypothetical protein; inner-membrane translocator 979124 5743874 Cphy_0758 Clostridium phytofermentans ISDg inner-membrane translocator YP_001557884.1 978171 D 357809 CDS YP_001557885.1 160878917 5743875 complement(979218..980723) 1 NC_010001.1 PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: fnu:FN0061 thermostable carboxypeptidase 1; carboxypeptidase Taq 980723 5743875 Cphy_0759 Clostridium phytofermentans ISDg carboxypeptidase Taq YP_001557885.1 979218 R 357809 CDS YP_001557886.1 160878918 5743876 981285..982148 1 NC_010001.1 PFAM: protein of unknown function DUF161; KEGG: cbe:Cbei_3252 protein of unknown function DUF161; hypothetical protein 982148 5743876 Cphy_0760 Clostridium phytofermentans ISDg hypothetical protein YP_001557886.1 981285 D 357809 CDS YP_001557887.1 160878919 5743877 982643..983851 1 NC_010001.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 983851 5743877 Cphy_0761 Clostridium phytofermentans ISDg tyrosyl-tRNA synthetase YP_001557887.1 982643 D 357809 CDS YP_001557888.1 160878920 5743878 983970..985172 1 NC_010001.1 hypothetical protein 985172 5743878 Cphy_0762 Clostridium phytofermentans ISDg hypothetical protein YP_001557888.1 983970 D 357809 CDS YP_001557889.1 160878921 5743881 985767..986411 1 NC_010001.1 hypothetical protein 986411 5743881 Cphy_0763 Clostridium phytofermentans ISDg hypothetical protein YP_001557889.1 985767 D 357809 CDS YP_001557890.1 160878922 5743882 986994..988166 1 NC_010001.1 PFAM: basic membrane lipoprotein; KEGG: cno:NT01CX_0401 membrane protein, Bmp family; basic membrane lipoprotein 988166 5743882 Cphy_0764 Clostridium phytofermentans ISDg basic membrane lipoprotein YP_001557890.1 986994 D 357809 CDS YP_001557891.1 160878923 5743883 988605..990140 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0400 ABC transporter, ATP-binding protein; ABC transporter 990140 5743883 Cphy_0765 Clostridium phytofermentans ISDg ABC transporter YP_001557891.1 988605 D 357809 CDS YP_001557892.1 160878924 5743884 990133..991233 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0399 branched-chain amino acid transport system / permease component; inner-membrane translocator 991233 5743884 Cphy_0766 Clostridium phytofermentans ISDg inner-membrane translocator YP_001557892.1 990133 D 357809 CDS YP_001557893.1 160878925 5743885 991233..992192 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0398 branched-chain amino acid transport system / permease component; inner-membrane translocator 992192 5743885 Cphy_0767 Clostridium phytofermentans ISDg inner-membrane translocator YP_001557893.1 991233 D 357809 CDS YP_001557894.1 160878926 5743886 complement(992375..993160) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: cbe:Cbei_4358 transcriptional regulator, AraC family; AraC family transcriptional regulator 993160 5743886 Cphy_0768 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001557894.1 992375 R 357809 CDS YP_001557895.1 160878927 5743887 993285..994607 1 NC_010001.1 PFAM: glycoside hydrolase family 4; KEGG: cbe:Cbei_4359 glycoside hydrolase, family 4; glycoside hydrolase family protein 994607 5743887 Cphy_0769 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001557895.1 993285 D 357809 CDS YP_001557896.1 160878928 5745250 994704..995759 1 NC_010001.1 KEGG: fjo:Fjoh_4231 hypothetical protein; hypothetical protein 995759 5745250 Cphy_0770 Clostridium phytofermentans ISDg hypothetical protein YP_001557896.1 994704 D 357809 CDS YP_001557897.1 160878929 5745251 995811..996878 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bsu:BG12848 two-component response regulator. potential cognate sensor kinase is YesM; two component AraC family transcriptional regulator 996878 5745251 Cphy_0771 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001557897.1 995811 D 357809 CDS YP_001557898.1 160878930 5745252 996904..998826 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: bld:BLi00440 ABC transporter (permease); RBL00398; integral membrane sensor signal transduction histidine kinase 998826 5745252 Cphy_0772 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001557898.1 996904 D 357809 CDS YP_001557899.1 160878931 5745253 999105..1000040 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB2090 hypothetical conserved protein; binding-protein-dependent transport system inner membrane protein 1000040 5745253 Cphy_0773 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557899.1 999105 D 357809 CDS YP_001557900.1 160878932 5745254 1000095..1000940 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0481 ABC transporter (permiase); binding-protein-dependent transport systems inner membrane component 1000940 5745254 Cphy_0774 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001557900.1 1000095 D 357809 CDS YP_001557901.1 160878933 5745255 1001005..1002576 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC1144 sugar ABC transporter substrate-binding protein; extracellular solute-binding protein 1002576 5745255 Cphy_0775 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001557901.1 1001005 D 357809 CDS YP_001557902.1 160878934 5745256 1002623..1003717 1 NC_010001.1 PFAM: glycosyl hydrolase family 88; KEGG: bcl:ABC3274 unsaturated glucuronyl hydrolase; glycosyl hydrolase family protein 1003717 5745256 Cphy_0776 Clostridium phytofermentans ISDg glycosyl hydrolase family protein YP_001557902.1 1002623 D 357809 CDS YP_001557903.1 160878935 5745257 1003733..1004680 1 NC_010001.1 hypothetical protein 1004680 5745257 Cphy_0777 Clostridium phytofermentans ISDg hypothetical protein YP_001557903.1 1003733 D 357809 CDS YP_001557904.1 160878936 5745258 1004791..1005084 1 NC_010001.1 KEGG: ppd:Ppro_2620 beta-lactamase domain protein; beta-lactamase domain-containing protein 1005084 5745258 Cphy_0778 Clostridium phytofermentans ISDg beta-lactamase domain-containing protein YP_001557904.1 1004791 D 357809 CDS YP_001557905.1 160878937 5745259 1005379..1006206 1 NC_010001.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: bfs:BF0163 haloacid dehalogenase-like hydrolase; cof family hydrolase 1006206 5745259 Cphy_0779 Clostridium phytofermentans ISDg cof family hydrolase YP_001557905.1 1005379 D 357809 CDS YP_001557906.1 160878938 5745260 complement(1006228..1006698) 1 NC_010001.1 KEGG: cbe:Cbei_3228 hypothetical protein; hypothetical protein 1006698 5745260 Cphy_0780 Clostridium phytofermentans ISDg hypothetical protein YP_001557906.1 1006228 R 357809 CDS YP_001557907.1 160878939 5745261 complement(1006946..1007644) 1 NC_010001.1 PFAM: protein of unknown function DUF955; KEGG: cbe:Cbei_3960 protein of unknown function DUF955; hypothetical protein 1007644 5745261 Cphy_0781 Clostridium phytofermentans ISDg hypothetical protein YP_001557907.1 1006946 R 357809 CDS YP_001557908.1 160878940 5745262 complement(1007660..1007986) 1 NC_010001.1 PFAM: helix-turn-helix domain protein; KEGG: bce:BC3704 LexA repressor; XRE family transcriptional regulator 1007986 5745262 Cphy_0782 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001557908.1 1007660 R 357809 CDS YP_001557909.1 160878941 5745263 1008212..1008709 1 NC_010001.1 KEGG: drm:Dred_2611 hypothetical protein; hypothetical protein 1008709 5745263 Cphy_0783 Clostridium phytofermentans ISDg hypothetical protein YP_001557909.1 1008212 D 357809 CDS YP_001557910.1 160878942 5745264 1009795..1010211 1 NC_010001.1 hypothetical protein 1010211 5745264 Cphy_0784 Clostridium phytofermentans ISDg hypothetical protein YP_001557910.1 1009795 D 357809 CDS YP_001557911.1 160878943 5745265 1010397..1011677 1 NC_010001.1 KEGG: cdf:CD2910 phage protein; phage protein 1011677 5745265 Cphy_0785 Clostridium phytofermentans ISDg phage protein YP_001557911.1 1010397 D 357809 CDS YP_001557912.1 160878944 5745266 1011690..1012169 1 NC_010001.1 KEGG: cdf:CD2909 phage protein; phage protein 1012169 5745266 Cphy_0786 Clostridium phytofermentans ISDg phage protein YP_001557912.1 1011690 D 357809 CDS YP_001557913.1 160878945 5745267 1012405..1012833 1 NC_010001.1 PFAM: XkdN-like protein; KEGG: cdf:CD2908 phage protein; XkdN-like protein 1012833 5745267 Cphy_0787 Clostridium phytofermentans ISDg XkdN-like protein YP_001557913.1 1012405 D 357809 CDS YP_001557914.1 160878946 5745268 1013019..1015619 1 NC_010001.1 TIGRFAM: phage tape measure protein; KEGG: cth:Cthe_2488 phage tape measure protein; phage tape measure protein 1015619 5745268 Cphy_0788 Clostridium phytofermentans ISDg phage tape measure protein YP_001557914.1 1013019 D 357809 CDS YP_001557915.1 160878947 5745269 1015630..1016487 1 NC_010001.1 PFAM: Peptidoglycan-binding LysM; KEGG: cdf:CD2904 phage cell wall hydrolase; peptidoglycan-binding LysM 1016487 5745269 Cphy_0789 Clostridium phytofermentans ISDg peptidoglycan-binding LysM YP_001557915.1 1015630 D 357809 CDS YP_001557916.1 160878948 5745270 1016502..1017458 1 NC_010001.1 KEGG: cdf:CD2903 phage cell wall hydrolase; phage cell wall hydrolase 1017458 5745270 Cphy_0790 Clostridium phytofermentans ISDg phage cell wall hydrolase YP_001557916.1 1016502 D 357809 CDS YP_001557917.1 160878949 5745271 1017451..1017768 1 NC_010001.1 KEGG: dsy:DSY3951 hypothetical protein; hypothetical protein 1017768 5745271 Cphy_0791 Clostridium phytofermentans ISDg hypothetical protein YP_001557917.1 1017451 D 357809 CDS YP_001557918.1 160878950 5745272 1017765..1018157 1 NC_010001.1 KEGG: cdf:CD2901 phage protein; phage protein 1018157 5745272 Cphy_0792 Clostridium phytofermentans ISDg phage protein YP_001557918.1 1017765 D 357809 CDS YP_001557919.1 160878951 5745273 1018157..1019230 1 NC_010001.1 KEGG: cdf:CD2900 phage tail protein; phage tail protein 1019230 5745273 Cphy_0793 Clostridium phytofermentans ISDg phage tail protein YP_001557919.1 1018157 D 357809 CDS YP_001557920.1 160878952 5745274 1019220..1019759 1 NC_010001.1 KEGG: cdf:CD2899 phage protein; hypothetical protein 1019759 5745274 Cphy_0794 Clostridium phytofermentans ISDg hypothetical protein YP_001557920.1 1019220 D 357809 CDS YP_001557921.1 160878953 5745275 1019764..1020864 1 NC_010001.1 hypothetical protein 1020864 5745275 Cphy_0795 Clostridium phytofermentans ISDg hypothetical protein YP_001557921.1 1019764 D 357809 CDS YP_001557922.1 160878954 5745276 1020876..1022141 1 NC_010001.1 hypothetical protein 1022141 5745276 Cphy_0796 Clostridium phytofermentans ISDg hypothetical protein YP_001557922.1 1020876 D 357809 CDS YP_001557923.1 160878955 5745277 1022153..1022530 1 NC_010001.1 hypothetical protein 1022530 5745277 Cphy_0797 Clostridium phytofermentans ISDg hypothetical protein YP_001557923.1 1022153 D 357809 CDS YP_001557924.1 160878956 5745278 1022767..1023249 1 NC_010001.1 TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: bha:BH0965 unknown conserved protein; toxin secretion/phage lysis holin 1023249 5745278 Cphy_0798 Clostridium phytofermentans ISDg toxin secretion/phage lysis holin YP_001557924.1 1022767 D 357809 CDS YP_001557925.1 160878957 5745279 1023242..1023892 1 NC_010001.1 KEGG: dsy:DSY4643 hypothetical protein; hypothetical protein 1023892 5745279 Cphy_0799 Clostridium phytofermentans ISDg hypothetical protein YP_001557925.1 1023242 D 357809 CDS YP_001557926.1 160878958 5745280 complement(1024017..1024262) 1 NC_010001.1 hypothetical protein 1024262 5745280 Cphy_0800 Clostridium phytofermentans ISDg hypothetical protein YP_001557926.1 1024017 R 357809 CDS YP_001557927.1 160878959 5745281 1024756..1025178 1 NC_010001.1 hypothetical protein 1025178 5745281 Cphy_0801 Clostridium phytofermentans ISDg hypothetical protein YP_001557927.1 1024756 D 357809 CDS YP_001557928.1 160878960 5745282 complement(1025368..1026192) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: drm:Dred_1834 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1026192 5745282 Cphy_0802 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557928.1 1025368 R 357809 CDS YP_001557929.1 160878961 5745283 complement(1026189..1026971) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbf:CLI_3310 ABC transporter, ATP-binding protein; ABC transporter 1026971 5745283 Cphy_0803 Clostridium phytofermentans ISDg ABC transporter YP_001557929.1 1026189 R 357809 CDS YP_001557930.1 160878962 5745284 1028119..1029336 1 NC_010001.1 KEGG: mac:MA3471 hypothetical protein; hypothetical protein 1029336 5745284 Cphy_0804 Clostridium phytofermentans ISDg hypothetical protein YP_001557930.1 1028119 D 357809 CDS YP_001557931.1 160878963 5745285 1029458..1031935 1 NC_010001.1 PFAM: extracellular solute-binding protein family 5; KEGG: bcy:Bcer98_0219 extracellular solute-binding protein family 5; extracellular solute-binding protein 1031935 5745285 Cphy_0805 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001557931.1 1029458 D 357809 CDS YP_001557932.1 160878964 5745286 1032036..1033040 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC0177 oligopeptide transport permease; binding-protein-dependent transport system inner membrane protein 1033040 5745286 Cphy_0806 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557932.1 1032036 D 357809 CDS YP_001557933.1 160878965 5745287 1033053..1034102 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE2524 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; binding-protein-dependent transport system inner membrane protein 1034102 5745287 Cphy_0807 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557933.1 1033053 D 357809 CDS YP_001557934.1 160878966 5745288 1034115..1035296 1 NC_010001.1 KEGG: cpr:CPR_2255 oligopeptide ABC transporter, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1035296 5745288 Cphy_0808 Clostridium phytofermentans ISDg oligopeptide/dipeptide ABC transporter ATPase YP_001557934.1 1034115 D 357809 CDS YP_001557935.1 160878967 5745289 1035289..1036257 1 NC_010001.1 KEGG: cac:CAC0180 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1036257 5745289 Cphy_0809 Clostridium phytofermentans ISDg oligopeptide/dipeptide ABC transporter ATPase YP_001557935.1 1035289 D 357809 CDS YP_001557936.1 160878968 5745290 1036632..1036952 1 NC_010001.1 hypothetical protein 1036952 5745290 Cphy_0810 Clostridium phytofermentans ISDg hypothetical protein YP_001557936.1 1036632 D 357809 CDS YP_001557937.1 160878969 5745291 1037328..1037885 1 NC_010001.1 hypothetical protein 1037885 5745291 Cphy_0811 Clostridium phytofermentans ISDg hypothetical protein YP_001557937.1 1037328 D 357809 CDS YP_001557938.1 160878970 5745292 1038064..1040445 1 NC_010001.1 PFAM: extracellular solute-binding protein family 5; KEGG: tte:TTE2522 ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components; extracellular solute-binding protein 1040445 5745292 Cphy_0812 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001557938.1 1038064 D 357809 CDS YP_001557939.1 160878971 5745293 1040714..1041700 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC0177 oligopeptide transport permease; binding-protein-dependent transport system inner membrane protein 1041700 5745293 Cphy_0813 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557939.1 1040714 D 357809 CDS YP_001557940.1 160878972 5745294 1041784..1043595 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_2256 oligopeptide ABC transporter, permease component; binding-protein-dependent transport system inner membrane protein 1043595 5745294 Cphy_0814 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557940.1 1041784 D 357809 CDS YP_001557941.1 160878973 5745295 1043605..1044765 1 NC_010001.1 KEGG: cpr:CPR_2255 oligopeptide ABC transporter, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1044765 5745295 Cphy_0815 Clostridium phytofermentans ISDg oligopeptide/dipeptide ABC transporter ATPase YP_001557941.1 1043605 D 357809 CDS YP_001557942.1 160878974 5745296 1044767..1045786 1 NC_010001.1 KEGG: tte:TTE2526 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1045786 5745296 Cphy_0816 Clostridium phytofermentans ISDg oligopeptide/dipeptide ABC transporter ATPase YP_001557942.1 1044767 D 357809 CDS YP_001557943.1 160878975 5745297 1046130..1046675 1 NC_010001.1 hypothetical protein 1046675 5745297 Cphy_0817 Clostridium phytofermentans ISDg hypothetical protein YP_001557943.1 1046130 D 357809 CDS YP_001557944.1 160878976 5745298 1047126..1048745 1 NC_010001.1 PFAM: Radical SAM domain protein; KEGG: dsy:DSY2535 hypothetical protein; radical SAM domain-containing protein 1048745 5745298 Cphy_0818 Clostridium phytofermentans ISDg radical SAM domain-containing protein YP_001557944.1 1047126 D 357809 CDS YP_001557945.1 160878977 5745299 1048941..1049783 1 NC_010001.1 KEGG: drm:Dred_1283 hypothetical protein; hypothetical protein 1049783 5745299 Cphy_0819 Clostridium phytofermentans ISDg hypothetical protein YP_001557945.1 1048941 D 357809 CDS YP_001557946.1 160878978 5745300 1049776..1050588 1 NC_010001.1 KEGG: cbf:CLI_1135 hypothetical protein; hypothetical protein 1050588 5745300 Cphy_0820 Clostridium phytofermentans ISDg hypothetical protein YP_001557946.1 1049776 D 357809 CDS YP_001557947.1 160878979 5745301 1050649..1050906 1 NC_010001.1 KEGG: ddi:DDBDRAFT_0186922 hypothetical protein; hypothetical protein 1050906 5745301 Cphy_0821 Clostridium phytofermentans ISDg hypothetical protein YP_001557947.1 1050649 D 357809 CDS YP_001557948.1 160878980 5745302 complement(1050966..1052156) 1 NC_010001.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tte:TTE1983 predicted phosphatase/phosphohexomutase; HAD family hydrolase 1052156 5745302 Cphy_0822 Clostridium phytofermentans ISDg HAD family hydrolase YP_001557948.1 1050966 R 357809 CDS YP_001557949.1 160878981 5741696 1052389..1052733 1 NC_010001.1 KEGG: cbe:Cbei_4812 hypothetical protein; hypothetical protein 1052733 5741696 Cphy_0823 Clostridium phytofermentans ISDg hypothetical protein YP_001557949.1 1052389 D 357809 CDS YP_001557950.1 160878982 5741697 complement(1052739..1053182) 1 NC_010001.1 KEGG: cth:Cthe_0359 hypothetical protein; hypothetical protein 1053182 5741697 Cphy_0824 Clostridium phytofermentans ISDg hypothetical protein YP_001557950.1 1052739 R 357809 CDS YP_001557951.1 160878983 5741698 1053497..1053994 1 NC_010001.1 PFAM: adenylate cyclase; KEGG: pdi:BDI_3761 hypothetical protein; adenylate cyclase 1053994 5741698 Cphy_0825 Clostridium phytofermentans ISDg adenylate cyclase YP_001557951.1 1053497 D 357809 CDS YP_001557952.1 160878984 5741699 1054316..1055650 1 NC_010001.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1055650 5741699 Cphy_0826 Clostridium phytofermentans ISDg glutamate dehydrogenase YP_001557952.1 1054316 D 357809 CDS YP_001557953.1 160878985 5741700 complement(1055896..1057131) 1 NC_010001.1 PFAM: Spore germination protein; KEGG: ctc:CTC01778 spore germination protein KB; spore germination protein 1057131 5741700 Cphy_0827 Clostridium phytofermentans ISDg spore germination protein YP_001557953.1 1055896 R 357809 CDS YP_001557954.1 160878986 5741701 complement(1057121..1058326) 1 NC_010001.1 KEGG: ctc:CTC01777 spore germination protein KC; hypothetical protein 1058326 5741701 Cphy_0828 Clostridium phytofermentans ISDg hypothetical protein YP_001557954.1 1057121 R 357809 CDS YP_001557955.1 160878987 5741702 complement(1058365..1059843) 1 NC_010001.1 PFAM: GerA spore germination protein; KEGG: ctc:CTC01776 spore germination protein KA; GerA spore germination protein 1059843 5741702 Cphy_0829 Clostridium phytofermentans ISDg GerA spore germination protein YP_001557955.1 1058365 R 357809 CDS YP_001557956.1 160878988 5741703 complement(1060164..1061153) 1 NC_010001.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: dsy:DSY1195 hypothetical protein; redoxin domain-containing protein 1061153 5741703 Cphy_0830 Clostridium phytofermentans ISDg redoxin domain-containing protein YP_001557956.1 1060164 R 357809 CDS YP_001557957.1 160878989 5741704 complement(1061183..1061857) 1 NC_010001.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dsy:DSY1196 probable cytochrome c biogenesis protein CcdA; cytochrome c biogenesis protein transmembrane region 1061857 5741704 Cphy_0831 Clostridium phytofermentans ISDg cytochrome c biogenesis protein transmembrane region YP_001557957.1 1061183 R 357809 CDS YP_001557958.1 160878990 5741705 complement(1062345..1063100) 1 NC_010001.1 PFAM: protein of unknown function DUF218; KEGG: cno:NT01CX_1576 hypothetical protein; hypothetical protein 1063100 5741705 Cphy_0832 Clostridium phytofermentans ISDg hypothetical protein YP_001557958.1 1062345 R 357809 CDS YP_001557959.1 160878991 5741706 1063868..1064716 1 NC_010001.1 hypothetical protein 1064716 5741706 Cphy_0833 Clostridium phytofermentans ISDg hypothetical protein YP_001557959.1 1063868 D 357809 CDS YP_001557960.1 160878992 5741707 1064721..1065623 1 NC_010001.1 hypothetical protein 1065623 5741707 Cphy_0834 Clostridium phytofermentans ISDg hypothetical protein YP_001557960.1 1064721 D 357809 CDS YP_001557961.1 160878993 5741708 1065620..1066297 1 NC_010001.1 hypothetical protein 1066297 5741708 Cphy_0835 Clostridium phytofermentans ISDg hypothetical protein YP_001557961.1 1065620 D 357809 CDS YP_001557962.1 160878994 5741709 1066299..1067153 1 NC_010001.1 hypothetical protein 1067153 5741709 Cphy_0836 Clostridium phytofermentans ISDg hypothetical protein YP_001557962.1 1066299 D 357809 CDS YP_001557963.1 160878995 5741710 1067143..1068885 1 NC_010001.1 SMART: AAA ATPase; KEGG: hdu:HD1304 tight adherence protein A; ATPase AAA 1068885 5741710 Cphy_0837 Clostridium phytofermentans ISDg ATPase AAA YP_001557963.1 1067143 D 357809 CDS YP_001557964.1 160878996 5741711 1068882..1070417 1 NC_010001.1 hypothetical protein 1070417 5741711 Cphy_0838 Clostridium phytofermentans ISDg hypothetical protein YP_001557964.1 1068882 D 357809 CDS YP_001557965.1 160878997 5741712 1070451..1070855 1 NC_010001.1 hypothetical protein 1070855 5741712 Cphy_0839 Clostridium phytofermentans ISDg hypothetical protein YP_001557965.1 1070451 D 357809 CDS YP_001557966.1 160878998 5741713 1071166..1071606 1 NC_010001.1 hypothetical protein 1071606 5741713 Cphy_0840 Clostridium phytofermentans ISDg hypothetical protein YP_001557966.1 1071166 D 357809 CDS YP_001557967.1 160878999 5741714 1071887..1072348 1 NC_010001.1 hypothetical protein 1072348 5741714 Cphy_0841 Clostridium phytofermentans ISDg hypothetical protein YP_001557967.1 1071887 D 357809 CDS YP_001557968.1 160879000 5741715 1072350..1072832 1 NC_010001.1 hypothetical protein 1072832 5741715 Cphy_0842 Clostridium phytofermentans ISDg hypothetical protein YP_001557968.1 1072350 D 357809 CDS YP_001557969.1 160879001 5741716 1072878..1074005 1 NC_010001.1 hypothetical protein 1074005 5741716 Cphy_0843 Clostridium phytofermentans ISDg hypothetical protein YP_001557969.1 1072878 D 357809 CDS YP_001557970.1 160879002 5741717 1074172..1075491 1 NC_010001.1 hypothetical protein 1075491 5741717 Cphy_0844 Clostridium phytofermentans ISDg hypothetical protein YP_001557970.1 1074172 D 357809 CDS YP_001557971.1 160879003 5741718 1075493..1079431 1 NC_010001.1 hypothetical protein 1079431 5741718 Cphy_0845 Clostridium phytofermentans ISDg hypothetical protein YP_001557971.1 1075493 D 357809 CDS YP_001557972.1 160879004 5741719 1081497..1082285 1 NC_010001.1 KEGG: cth:Cthe_2278 extracellular solute-binding protein, family 3; amino acid ABC transporter periplasmic protein 1082285 5741719 Cphy_0847 Clostridium phytofermentans ISDg amino acid ABC transporter periplasmic protein YP_001557972.1 1081497 D 357809 CDS YP_001557973.1 160879005 5741720 1082551..1083258 1 NC_010001.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shw:Sputw3181_0917 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 1083258 5741720 Cphy_0848 Clostridium phytofermentans ISDg polar amino acid ABC transporter inner membrane subunit YP_001557973.1 1082551 D 357809 CDS YP_001557974.1 160879006 5741721 1083248..1083991 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1675 ABC transporter related; ABC transporter 1083991 5741721 Cphy_0849 Clostridium phytofermentans ISDg ABC transporter YP_001557974.1 1083248 D 357809 CDS YP_001557975.1 160879007 5741722 complement(1084122..1085408) 1 NC_010001.1 KEGG: ctc:CTC00469 predicted transglutaminase/protease; hypothetical protein 1085408 5741722 Cphy_0850 Clostridium phytofermentans ISDg hypothetical protein YP_001557975.1 1084122 R 357809 CDS YP_001557976.1 160879008 5741723 1086121..1086771 1 NC_010001.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: ssa:SSA_0217 two-component system transcriptional regulator (CheY domain and HTH-like DNA-binding domain); two component LuxR family transcriptional regulator 1086771 5741723 Cphy_0851 Clostridium phytofermentans ISDg two component LuxR family transcriptional regulator YP_001557976.1 1086121 D 357809 CDS YP_001557977.1 160879009 5741724 1086893..1087585 1 NC_010001.1 hypothetical protein 1087585 5741724 Cphy_0852 Clostridium phytofermentans ISDg hypothetical protein YP_001557977.1 1086893 D 357809 CDS YP_001557978.1 160879010 5741725 1087601..1089319 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; KEGG: cac:CAC1454 membrane associated histidine kinase-like ATPase; signal transduction histidine kinase 1089319 5741725 Cphy_0853 Clostridium phytofermentans ISDg signal transduction histidine kinase YP_001557978.1 1087601 D 357809 CDS YP_001557979.1 160879011 5741726 1089598..1090047 1 NC_010001.1 PFAM: regulatory protein MarR; transcriptional regulator TrmB; KEGG: dsy:DSY0085 hypothetical protein; transcriptional regulator TrmB 1090047 5741726 Cphy_0854 Clostridium phytofermentans ISDg transcriptional regulator TrmB YP_001557979.1 1089598 D 357809 CDS YP_001557980.1 160879012 5741727 1090050..1092317 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_1784 predicted transport protein; ABC transporter related 1092317 5741727 Cphy_0855 Clostridium phytofermentans ISDg ABC transporter related YP_001557980.1 1090050 D 357809 CDS YP_001557981.1 160879013 5741728 1092314..1094194 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2513 ABC-type multidrug/protein/lipid transport system, ATPase component; ABC transporter 1094194 5741728 Cphy_0856 Clostridium phytofermentans ISDg ABC transporter YP_001557981.1 1092314 D 357809 CDS YP_001557982.1 160879014 5741729 1094446..1097148 1 NC_010001.1 KEGG: bhe:BH00920 cyclic beta 1-2 glucan synthetase; cellulase 1097148 5741729 Cphy_0857 Clostridium phytofermentans ISDg cellulase YP_001557982.1 1094446 D 357809 CDS YP_001557983.1 160879015 5741730 1097657..1098994 1 NC_010001.1 PFAM: glycoside hydrolase family 30; KEGG: csc:Csac_2513 glucosylceramidase; glycoside hydrolase family protein 1098994 5741730 Cphy_0858 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001557983.1 1097657 D 357809 CDS YP_001557984.1 160879016 5741731 1099142..1099768 1 NC_010001.1 KEGG: cdf:CD3500 foldase lipoprotein (late stage protein export lipoprotein); hypothetical protein 1099768 5741731 Cphy_0859 Clostridium phytofermentans ISDg hypothetical protein YP_001557984.1 1099142 D 357809 CDS YP_001557985.1 160879017 5741732 1099884..1100825 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2554 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1100825 5741732 Cphy_0860 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557985.1 1099884 D 357809 CDS YP_001557986.1 160879018 5741733 1100837..1101745 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2553 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1101745 5741733 Cphy_0861 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001557986.1 1100837 D 357809 CDS YP_001557987.1 160879019 5741734 1101768..1103474 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_2552 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1103474 5741734 Cphy_0862 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001557987.1 1101768 D 357809 CDS YP_001557988.1 160879020 5741735 1103665..1105464 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: csc:Csac_2551 integral membrane sensor signal transduction histidine kinase; histidine kinase internal region 1105464 5741735 Cphy_0863 Clostridium phytofermentans ISDg histidine kinase internal region YP_001557988.1 1103665 D 357809 CDS YP_001557989.1 160879021 5741736 1105480..1106991 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_2550 response regulator receiver protein; two component AraC family transcriptional regulator 1106991 5741736 Cphy_0864 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001557989.1 1105480 D 357809 CDS YP_001557990.1 160879022 5741737 1107042..1110134 1 NC_010001.1 KEGG: fno:Fnod_0956 hypothetical protein; hypothetical protein 1110134 5741737 Cphy_0865 Clostridium phytofermentans ISDg hypothetical protein YP_001557990.1 1107042 D 357809 CDS YP_001557991.1 160879023 5741738 1110773..1111921 1 NC_010001.1 PFAM: beta-lactamase; KEGG: sil:SPO1641 beta-lactamase; beta-lactamase 1111921 5741738 Cphy_0866 Clostridium phytofermentans ISDg beta-lactamase YP_001557991.1 1110773 D 357809 CDS YP_001557992.1 160879024 5741739 1112355..1113065 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbe:Cbei_2117 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1113065 5741739 Cphy_0867 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001557992.1 1112355 D 357809 CDS YP_001557993.1 160879025 5741740 1113087..1115621 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cbe:Cbei_2118 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1115621 5741740 Cphy_0868 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001557993.1 1113087 D 357809 CDS YP_001557994.1 160879026 5741741 complement(1115859..1116722) 1 NC_010001.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cpe:CPE0026 hypothetical protein; degV family protein 1116722 5741741 Cphy_0869 Clostridium phytofermentans ISDg degV family protein YP_001557994.1 1115859 R 357809 CDS YP_001557995.1 160879027 5741742 1117321..1117461 1 NC_010001.1 KEGG: cth:Cthe_0907 hypothetical protein; hypothetical protein 1117461 5741742 Cphy_0870 Clostridium phytofermentans ISDg hypothetical protein YP_001557995.1 1117321 D 357809 CDS YP_001557996.1 160879028 5741743 1117774..1119243 1 NC_010001.1 PFAM: Radical SAM domain protein; KEGG: cth:Cthe_0906 radical SAM; radical SAM domain-containing protein 1119243 5741743 Cphy_0871 Clostridium phytofermentans ISDg radical SAM domain-containing protein YP_001557996.1 1117774 D 357809 CDS YP_001557997.1 160879029 5741744 1119304..1119924 1 NC_010001.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: csc:Csac_2481 methyltransferase type 11; methyltransferase type 12 1119924 5741744 Cphy_0872 Clostridium phytofermentans ISDg methyltransferase type 12 YP_001557997.1 1119304 D 357809 CDS YP_001557998.1 160879030 5741745 1120236..1120874 1 NC_010001.1 hypothetical protein 1120874 5741745 Cphy_0873 Clostridium phytofermentans ISDg hypothetical protein YP_001557998.1 1120236 D 357809 CDS YP_001557999.1 160879031 5741746 complement(1121176..1123458) 1 NC_010001.1 KEGG: afm:AFUA_3G12590 conserved hypothetical protein; hypothetical protein 1123458 5741746 Cphy_0874 Clostridium phytofermentans ISDg hypothetical protein YP_001557999.1 1121176 R 357809 CDS YP_001558000.1 160879032 5741747 1123806..1125716 1 NC_010001.1 PFAM: glycoside hydrolase family 43; KEGG: bld:BLi00864 xylan beta-1,4-xylosidase; RBL03427; glycoside hydrolase family protein 1125716 5741747 Cphy_0875 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001558000.1 1123806 D 357809 CDS YP_001558001.1 160879033 5741748 1125956..1127734 1 NC_010001.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cbe:Cbei_4321 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 1127734 5741748 Cphy_0876 Clostridium phytofermentans ISDg single-stranded-DNA-specific exonuclease RecJ YP_001558001.1 1125956 D 357809 CDS YP_001558002.1 160879034 5741749 1127968..1128282 1 NC_010001.1 hypothetical protein 1128282 5741749 Cphy_0877 Clostridium phytofermentans ISDg hypothetical protein YP_001558002.1 1127968 D 357809 CDS YP_001558003.1 160879035 5741750 complement(1128407..1129267) 1 NC_010001.1 KEGG: cbe:Cbei_1909 membrane -like protein; hypothetical protein 1129267 5741750 Cphy_0878 Clostridium phytofermentans ISDg hypothetical protein YP_001558003.1 1128407 R 357809 CDS YP_001558004.1 160879036 5741751 1129734..1130480 1 NC_010001.1 KEGG: cpe:CPE0991 tRNA-pseudouridine synthase I; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 1130480 5741751 Cphy_0879 Clostridium phytofermentans ISDg tRNA pseudouridine synthase A YP_001558004.1 1129734 D 357809 CDS YP_001558005.1 160879037 5741752 1130690..1131088 1 NC_010001.1 PFAM: NUDIX hydrolase; KEGG: ecs:ECs3139 hypothetical protein; NUDIX hydrolase 1131088 5741752 Cphy_0880 Clostridium phytofermentans ISDg NUDIX hydrolase YP_001558005.1 1130690 D 357809 CDS YP_001558006.1 160879038 5741753 1131164..1132444 1 NC_010001.1 KEGG: amt:Amet_4213 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3; dihydroorotase, multifunctional complex type 1132444 5741753 Cphy_0881 Clostridium phytofermentans ISDg dihydroorotase, multifunctional complex type YP_001558006.1 1131164 D 357809 CDS YP_001558007.1 160879039 5741754 1132706..1133635 1 NC_010001.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: amt:Amet_4212 orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 1133635 5741754 Cphy_0882 Clostridium phytofermentans ISDg orotidine 5'-phosphate decarboxylase YP_001558007.1 1132706 D 357809 CDS YP_001558008.1 160879040 5741755 1133655..1135010 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_2656 MATE efflux family protein; MATE efflux family protein 1135010 5741755 Cphy_0883 Clostridium phytofermentans ISDg MATE efflux family protein YP_001558008.1 1133655 D 357809 CDS YP_001558009.1 160879041 5741756 complement(1135340..1135951) 1 NC_010001.1 PFAM: SNARE associated Golgi protein; KEGG: cdf:CD0314 hypothetical protein; hypothetical protein 1135951 5741756 Cphy_0884 Clostridium phytofermentans ISDg hypothetical protein YP_001558009.1 1135340 R 357809 CDS YP_001558010.1 160879042 5741757 1136104..1137153 1 NC_010001.1 KEGG: lwe:lwe2206 CoiA-like family protein; competence protein-like protein 1137153 5741757 Cphy_0885 Clostridium phytofermentans ISDg competence protein-like protein YP_001558010.1 1136104 D 357809 CDS YP_001558011.1 160879043 5741758 1137184..1138152 1 NC_010001.1 KEGG: llc:LACR_1479 hypothetical protein; hypothetical protein 1138152 5741758 Cphy_0886 Clostridium phytofermentans ISDg hypothetical protein YP_001558011.1 1137184 D 357809 CDS YP_001558012.1 160879044 5741759 complement(1138291..1138560) 1 NC_010001.1 hypothetical protein 1138560 5741759 Cphy_0887 Clostridium phytofermentans ISDg hypothetical protein YP_001558012.1 1138291 R 357809 CDS YP_001558013.1 160879045 5741760 complement(1138603..1139820) 1 NC_010001.1 KEGG: pfa:PF13_0097 hypothetical protein; hypothetical protein 1139820 5741760 Cphy_0888 Clostridium phytofermentans ISDg hypothetical protein YP_001558013.1 1138603 R 357809 CDS YP_001558014.1 160879046 5741761 complement(1139974..1140453) 1 NC_010001.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1140453 5741761 Cphy_0889 Clostridium phytofermentans ISDg S-ribosylhomocysteinase YP_001558014.1 1139974 R 357809 CDS YP_001558015.1 160879047 5741763 1141276..1141920 1 NC_010001.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cdf:CD2573 probable hydrolase; hydrolase 1141920 5741763 Cphy_0891 Clostridium phytofermentans ISDg hydrolase YP_001558015.1 1141276 D 357809 CDS YP_001558016.1 160879048 5741764 1142074..1143030 1 NC_010001.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: cno:NT01CX_0980 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 1143030 5741764 Cphy_0892 Clostridium phytofermentans ISDg D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit YP_001558016.1 1142074 D 357809 CDS YP_001558017.1 160879049 5741765 complement(1143168..1144637) 1 NC_010001.1 PFAM: Catalase domain protein; KEGG: bce:BC1155 catalase; catalase 1144637 5741765 Cphy_0893 Clostridium phytofermentans ISDg catalase YP_001558017.1 1143168 R 357809 CDS YP_001558018.1 160879050 5741766 complement(1144874..1145986) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: cth:Cthe_0747 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1145986 5741766 Cphy_0894 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001558018.1 1144874 R 357809 CDS YP_001558019.1 160879051 5741767 complement(1146011..1146823) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_0748 binding-protein-dependent transport systems inner membrane component; ornithine carbamoyltransferase 1146823 5741767 Cphy_0895 Clostridium phytofermentans ISDg ornithine carbamoyltransferase YP_001558019.1 1146011 R 357809 CDS YP_001558020.1 160879052 5741768 complement(1146817..1147710) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1462 hypothetical protein; binding-protein-dependent transport system inner membrane protein 1147710 5741768 Cphy_0896 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001558020.1 1146817 R 357809 CDS YP_001558021.1 160879053 5741769 complement(1147703..1148779) 1 NC_010001.1 KEGG: cth:Cthe_0750 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 1148779 5741769 Cphy_0897 Clostridium phytofermentans ISDg spermidine/putrescine ABC transporter ATPase YP_001558021.1 1147703 R 357809 CDS YP_001558022.1 160879054 5741770 complement(1148791..1149330) 1 NC_010001.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: cth:Cthe_0751 transcriptional regulator, XRE family with cupin sensor; XRE family transcriptional regulator 1149330 5741770 Cphy_0898 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001558022.1 1148791 R 357809 CDS YP_001558023.1 160879055 5741771 1149784..1150539 1 NC_010001.1 KEGG: cth:Cthe_2569 hypothetical protein; hypothetical protein 1150539 5741771 Cphy_0899 Clostridium phytofermentans ISDg hypothetical protein YP_001558023.1 1149784 D 357809 CDS YP_001558024.1 160879056 5741772 complement(1150709..1152709) 1 NC_010001.1 PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_3249 drug resistance ABC transporter, ATP-binding protein; ABC transporter 1152709 5741772 Cphy_0900 Clostridium phytofermentans ISDg ABC transporter YP_001558024.1 1150709 R 357809 CDS YP_001558025.1 160879057 5741773 1153271..1153918 1 NC_010001.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 1153918 5741773 Cphy_0901 Clostridium phytofermentans ISDg redox-sensing transcriptional repressor Rex YP_001558025.1 1153271 D 357809 CDS YP_001558026.1 160879058 5741774 1153915..1154682 1 NC_010001.1 KEGG: cth:Cthe_2695 hypothetical protein; hypothetical protein 1154682 5741774 Cphy_0902 Clostridium phytofermentans ISDg hypothetical protein YP_001558026.1 1153915 D 357809 CDS YP_001558027.1 160879059 5741775 1154707..1155075 1 NC_010001.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: cno:NT01CX_1261 holo-(acyl-carrier-protein) synthase; holo-acyl-carrier-protein synthase 1155075 5741775 Cphy_0903 Clostridium phytofermentans ISDg holo-acyl-carrier-protein synthase YP_001558027.1 1154707 D 357809 CDS YP_001558028.1 160879060 5741776 1155089..1156636 1 NC_010001.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: tte:TTE2170 predicted sugar kinase; carbohydrate kinase 1156636 5741776 Cphy_0904 Clostridium phytofermentans ISDg carbohydrate kinase YP_001558028.1 1155089 D 357809 CDS YP_001558029.1 160879061 5741777 1156629..1157798 1 NC_010001.1 KEGG: cbe:Cbei_2758 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 1157798 5741777 Cphy_0905 Clostridium phytofermentans ISDg alanine racemase YP_001558029.1 1156629 D 357809 CDS YP_001558030.1 160879062 5741778 1157877..1158278 1 NC_010001.1 PFAM: PemK family protein; KEGG: cth:Cthe_2699 transcriptional modulator of MazE/toxin, MazF; transcriptional modulator of MazE/toxin MazF 1158278 5741778 Cphy_0906 Clostridium phytofermentans ISDg transcriptional modulator of MazE/toxin MazF YP_001558030.1 1157877 D 357809 CDS YP_001558031.1 160879063 5741779 1158767..1160230 1 NC_010001.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cbf:CLI_2985 CBS/transporter-associated domain protein; hypothetical protein 1160230 5741779 Cphy_0907 Clostridium phytofermentans ISDg hypothetical protein YP_001558031.1 1158767 D 357809 CDS YP_001558032.1 160879064 5741780 1161112..1161885 1 NC_010001.1 PFAM: protein of unknown function DUF1212; KEGG: cbe:Cbei_1867 protein of unknown function DUF1212; hypothetical protein 1161885 5741780 Cphy_0908 Clostridium phytofermentans ISDg hypothetical protein YP_001558032.1 1161112 D 357809 CDS YP_001558033.1 160879065 5741781 1161882..1162484 1 NC_010001.1 KEGG: csc:Csac_2063 hypothetical protein; hypothetical protein 1162484 5741781 Cphy_0909 Clostridium phytofermentans ISDg hypothetical protein YP_001558033.1 1161882 D 357809 CDS YP_001558034.1 160879066 5741782 1162542..1163021 1 NC_010001.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 1163021 5741782 Cphy_0910 Clostridium phytofermentans ISDg rRNA large subunit methyltransferase YP_001558034.1 1162542 D 357809 CDS YP_001558035.1 160879067 5741783 1163265..1163804 1 NC_010001.1 hypothetical protein 1163804 5741783 Cphy_0911 Clostridium phytofermentans ISDg hypothetical protein YP_001558035.1 1163265 D 357809 CDS YP_001558036.1 160879068 5741784 1164154..1164624 1 NC_010001.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cpf:CPF_1092 RNA polymerase sigma-70 factor, ECF family; ECF subfamily RNA polymerase sigma-24 factor 1164624 5741784 Cphy_0912 Clostridium phytofermentans ISDg ECF subfamily RNA polymerase sigma-24 factor YP_001558036.1 1164154 D 357809 CDS YP_001558037.1 160879069 5741785 1164629..1165360 1 NC_010001.1 KEGG: cpf:CPF_1093 hypothetical protein; hypothetical protein 1165360 5741785 Cphy_0913 Clostridium phytofermentans ISDg hypothetical protein YP_001558037.1 1164629 D 357809 CDS YP_001558038.1 160879070 5741786 1165361..1166233 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_1094 ABC transporter, ATP-binding protein; ABC transporter 1166233 5741786 Cphy_0914 Clostridium phytofermentans ISDg ABC transporter YP_001558038.1 1165361 D 357809 CDS YP_001558039.1 160879071 5741787 1166236..1167501 1 NC_010001.1 KEGG: cpf:CPF_1095 hypothetical protein; hypothetical protein 1167501 5741787 Cphy_0915 Clostridium phytofermentans ISDg hypothetical protein YP_001558039.1 1166236 D 357809 CDS YP_001558040.1 160879072 5741788 1167513..1168667 1 NC_010001.1 KEGG: cpf:CPF_1096 hypothetical protein; hypothetical protein 1168667 5741788 Cphy_0916 Clostridium phytofermentans ISDg hypothetical protein YP_001558040.1 1167513 D 357809 CDS YP_001558041.1 160879073 5741789 1169148..1169756 1 NC_010001.1 KEGG: cbh:CLC_1692 hypothetical protein; hypothetical protein 1169756 5741789 Cphy_0917 Clostridium phytofermentans ISDg hypothetical protein YP_001558041.1 1169148 D 357809 CDS YP_001558042.1 160879074 5741790 complement(1170206..1171381) 1 NC_010001.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1171381 5741790 Cphy_0918 Clostridium phytofermentans ISDg transposase IS204/IS1001/IS1096/IS1165 family protein YP_001558042.1 1170206 R 357809 CDS YP_001558043.1 160879075 5741791 1171893..1173095 1 NC_010001.1 KEGG: bsu:BG13636 hypothetical protein; hypothetical protein 1173095 5741791 Cphy_0919 Clostridium phytofermentans ISDg hypothetical protein YP_001558043.1 1171893 D 357809 CDS YP_001558044.1 160879076 5741792 1173304..1174317 1 NC_010001.1 hypothetical protein 1174317 5741792 Cphy_0920 Clostridium phytofermentans ISDg hypothetical protein YP_001558044.1 1173304 D 357809 CDS YP_001558045.1 160879077 5741793 1174857..1175444 1 NC_010001.1 KEGG: cph:Cpha266_1604 hypothetical protein; hypothetical protein 1175444 5741793 Cphy_0921 Clostridium phytofermentans ISDg hypothetical protein YP_001558045.1 1174857 D 357809 CDS YP_001558046.1 160879078 5741795 1175807..1177324 1 NC_010001.1 KEGG: cno:NT01CX_1720 hypothetical protein; hypothetical protein 1177324 5741795 Cphy_0923 Clostridium phytofermentans ISDg hypothetical protein YP_001558046.1 1175807 D 357809 CDS YP_001558047.1 160879079 5741796 1177514..1178329 1 NC_010001.1 hypothetical protein 1178329 5741796 Cphy_0924 Clostridium phytofermentans ISDg hypothetical protein YP_001558047.1 1177514 D 357809 CDS YP_001558048.1 160879080 5741797 1178997..1180382 1 NC_010001.1 KEGG: bba:Bd3697 hypothetical protein; hypothetical protein 1180382 5741797 Cphy_0925 Clostridium phytofermentans ISDg hypothetical protein YP_001558048.1 1178997 D 357809 CDS YP_001558049.1 160879081 5741798 1180801..1180953 1 NC_010001.1 hypothetical protein 1180953 5741798 Cphy_0926 Clostridium phytofermentans ISDg hypothetical protein YP_001558049.1 1180801 D 357809 CDS YP_001558050.1 160879082 5741799 1181187..1181795 1 NC_010001.1 KEGG: cbh:CLC_1692 hypothetical protein; hypothetical protein 1181795 5741799 Cphy_0927 Clostridium phytofermentans ISDg hypothetical protein YP_001558050.1 1181187 D 357809 CDS YP_001558051.1 160879083 5741800 complement(1182272..1184572) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bsu:BG13838 similar to transcriptional regulator (AraC/XylS family); AraC family transcriptional regulator 1184572 5741800 Cphy_0928 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001558051.1 1182272 R 357809 CDS YP_001558052.1 160879084 5741801 1184776..1185768 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi03166 membrane protein; RBL03398; binding-protein-dependent transport system inner membrane protein 1185768 5741801 Cphy_0929 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001558052.1 1184776 D 357809 CDS YP_001558053.1 160879085 5741802 1185782..1186666 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0557 sugar ABC transporter permease; binding-protein-dependent transport systems inner membrane component 1186666 5741802 Cphy_0930 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001558053.1 1185782 D 357809 CDS YP_001558054.1 160879086 5741803 1186734..1188368 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: bld:BLi03168 similar to lipoprotein; RBL03402; extracellular solute-binding protein 1188368 5741803 Cphy_0931 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001558054.1 1186734 D 357809 CDS YP_001558055.1 160879087 5741804 1188484..1190736 1 NC_010001.1 PFAM: polysaccharide lyase family 8; polysaccharide lyase family 8 domain protein; KEGG: bth:BT_2964 chondroitinase AC precursor; polysaccharide lyase family protein 8 1190736 5741804 Cphy_0932 Clostridium phytofermentans ISDg polysaccharide lyase family protein 8 YP_001558055.1 1188484 D 357809 CDS YP_001558056.1 160879088 5741805 1190798..1191850 1 NC_010001.1 KEGG: fjo:Fjoh_4231 hypothetical protein; hypothetical protein 1191850 5741805 Cphy_0933 Clostridium phytofermentans ISDg hypothetical protein YP_001558056.1 1190798 D 357809 CDS YP_001558057.1 160879089 5741806 1191923..1193098 1 NC_010001.1 PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 unsaturated glucuronyl hydrolase; glycosyl hydrolase family protein 1193098 5741806 Cphy_0934 Clostridium phytofermentans ISDg glycosyl hydrolase family protein YP_001558057.1 1191923 D 357809 CDS YP_001558058.1 160879090 5741807 1193390..1195306 1 NC_010001.1 KEGG: abu:Abu_1539 conserved hypothetical protein; HD superfamily phosphohydrolase-like protein 1195306 5741807 Cphy_0935 Clostridium phytofermentans ISDg HD superfamily phosphohydrolase-like protein YP_001558058.1 1193390 D 357809 CDS YP_001558059.1 160879091 5741808 1195303..1195659 1 NC_010001.1 KEGG: bcl:ABC1987 hypothetical protein; hypothetical protein 1195659 5741808 Cphy_0936 Clostridium phytofermentans ISDg hypothetical protein YP_001558059.1 1195303 D 357809 CDS YP_001558060.1 160879092 5741809 1196101..1197840 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1553 ABC transporter related; ABC transporter 1197840 5741809 Cphy_0937 Clostridium phytofermentans ISDg ABC transporter YP_001558060.1 1196101 D 357809 CDS YP_001558061.1 160879093 5741810 1198305..1200728 1 NC_010001.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: gka:GK2842 leucyl-tRNA synthetase; leucyl-tRNA synthetase 1200728 5741810 Cphy_0938 Clostridium phytofermentans ISDg leucyl-tRNA synthetase YP_001558061.1 1198305 D 357809 CDS YP_001558062.1 160879094 5741811 1201209..1205180 1 NC_010001.1 KEGG: mba:Mbar_A1995 cell surface protein; hypothetical protein 1205180 5741811 Cphy_0939 Clostridium phytofermentans ISDg hypothetical protein YP_001558062.1 1201209 D 357809 CDS YP_001558063.1 160879095 5741812 1205467..1205925 1 NC_010001.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: dsy:DSY2792 hypothetical protein; ECF subfamily RNA polymerase sigma-24 factor 1205925 5741812 Cphy_0940 Clostridium phytofermentans ISDg ECF subfamily RNA polymerase sigma-24 factor YP_001558063.1 1205467 D 357809 CDS YP_001558064.1 160879096 5741813 1205922..1206647 1 NC_010001.1 KEGG: cno:NT01CX_1307 hypothetical protein; hypothetical protein 1206647 5741813 Cphy_0941 Clostridium phytofermentans ISDg hypothetical protein YP_001558064.1 1205922 D 357809 CDS YP_001558065.1 160879097 5741815 1207442..1208062 1 NC_010001.1 KEGG: dsy:DSY2794 hypothetical protein; hypothetical protein 1208062 5741815 Cphy_0944 Clostridium phytofermentans ISDg hypothetical protein YP_001558065.1 1207442 D 357809 CDS YP_001558066.1 160879098 5741816 1208352..1212347 1 NC_010001.1 KEGG: mac:MA4292 cell surface protein; hypothetical protein 1212347 5741816 Cphy_0945 Clostridium phytofermentans ISDg hypothetical protein YP_001558066.1 1208352 D 357809 CDS YP_001558067.1 160879099 5741817 1212923..1213483 1 NC_010001.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ldb:Ldb1881 RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 factor 1213483 5741817 Cphy_0946 Clostridium phytofermentans ISDg ECF subfamily RNA polymerase sigma-24 factor YP_001558067.1 1212923 D 357809 CDS YP_001558068.1 160879100 5743888 1213480..1214445 1 NC_010001.1 hypothetical protein 1214445 5743888 Cphy_0947 Clostridium phytofermentans ISDg hypothetical protein YP_001558068.1 1213480 D 357809 CDS YP_001558069.1 160879101 5743889 complement(1214641..1214853) 1 NC_010001.1 hypothetical protein 1214853 5743889 Cphy_0948 Clostridium phytofermentans ISDg hypothetical protein YP_001558069.1 1214641 R 357809 CDS YP_001558070.1 160879102 5743890 1215221..1215385 1 NC_010001.1 KEGG: btl:BALH_1875 lactoylglutathione lyase; lactoylglutathione lyase 1215385 5743890 Cphy_0949 Clostridium phytofermentans ISDg lactoylglutathione lyase YP_001558070.1 1215221 D 357809 CDS YP_001558071.1 160879103 5743891 1215463..1215990 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbe:Cbei_3606 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1215990 5743891 Cphy_0950 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001558071.1 1215463 D 357809 CDS YP_001558072.1 160879104 5743892 1216038..1216271 1 NC_010001.1 hypothetical protein 1216271 5743892 Cphy_0951 Clostridium phytofermentans ISDg hypothetical protein YP_001558072.1 1216038 D 357809 CDS YP_001558073.1 160879105 5743893 1216313..1216840 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ssa:SSA_1614 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1216840 5743893 Cphy_0952 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001558073.1 1216313 D 357809 CDS YP_001558074.1 160879106 5743894 1216928..1217344 1 NC_010001.1 KEGG: cdf:CD0593 hypothetical protein; hypothetical protein 1217344 5743894 Cphy_0953 Clostridium phytofermentans ISDg hypothetical protein YP_001558074.1 1216928 D 357809 CDS YP_001558075.1 160879107 5743895 1217507..1217698 1 NC_010001.1 PFAM: helix-turn-helix domain protein; KEGG: spb:M28_Spy1636 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 1217698 5743895 Cphy_0954 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001558075.1 1217507 D 357809 CDS YP_001558076.1 160879108 5743896 1217945..1218907 1 NC_010001.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: fnu:FN1967 hypothetical protein; xylose isomerase domain-containing protein 1218907 5743896 Cphy_0955 Clostridium phytofermentans ISDg xylose isomerase domain-containing protein YP_001558076.1 1217945 D 357809 CDS YP_001558077.1 160879109 5743897 1219342..1221117 1 NC_010001.1 catalyzes a two-step reaction, first charging an alanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1221117 5743897 Cphy_0956 Clostridium phytofermentans ISDg alanyl-tRNA synthetase YP_001558077.1 1219342 D 357809 CDS YP_001558078.1 160879110 5743898 1221625..1223472 1 NC_010001.1 KEGG: oih:OB1084 hypothetical protein; ATPase of the ABC class-like protein 1223472 5743898 Cphy_0957 Clostridium phytofermentans ISDg ATPase of the ABC class-like protein YP_001558078.1 1221625 D 357809 CDS YP_001558079.1 160879111 5743899 1223811..1225289 1 NC_010001.1 PFAM: Aldehyde Dehydrogenase_; KEGG: cbe:Cbei_0729 aldehyde dehydrogenase; aldehyde dehydrogenase 1225289 5743899 Cphy_0958 Clostridium phytofermentans ISDg aldehyde dehydrogenase YP_001558079.1 1223811 D 357809 CDS YP_001558080.1 160879112 5743900 complement(1225473..1226627) 1 NC_010001.1 KEGG: ade:Adeh_1850 hypothetical protein; hypothetical protein 1226627 5743900 Cphy_0959 Clostridium phytofermentans ISDg hypothetical protein YP_001558080.1 1225473 R 357809 CDS YP_001558081.1 160879113 5743901 1227082..1227720 1 NC_010001.1 PFAM: HhH-GPD family protein; KEGG: pca:Pcar_0009 endo III-related endonuclease; DNA-(apurinic or apyrimidinic site) lyase 1227720 5743901 Cphy_0960 Clostridium phytofermentans ISDg DNA-(apurinic or apyrimidinic site) lyase YP_001558081.1 1227082 D 357809 CDS YP_001558082.1 160879114 5743902 1228402..1230327 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_0247 ABC transporter-related protein; ABC transporter 1230327 5743902 Cphy_0961 Clostridium phytofermentans ISDg ABC transporter YP_001558082.1 1228402 D 357809 CDS YP_001558083.1 160879115 5743903 1230609..1231184 1 NC_010001.1 KEGG: cbe:Cbei_4079 hypothetical protein; hypothetical protein 1231184 5743903 Cphy_0962 Clostridium phytofermentans ISDg hypothetical protein YP_001558083.1 1230609 D 357809 CDS YP_001558084.1 160879116 5743904 1231159..1231836 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbe:Cbei_2249 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1231836 5743904 Cphy_0963 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001558084.1 1231159 D 357809 CDS YP_001558085.1 160879117 5743905 1231914..1232909 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cbe:Cbei_2250 histidine kinase; integral membrane sensor signal transduction histidine kinase 1232909 5743905 Cphy_0964 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001558085.1 1231914 D 357809 CDS YP_001558086.1 160879118 5743906 complement(1233227..1233841) 1 NC_010001.1 KEGG: btk:BT9727_2543 possible uridine kinase; uridine kinase 1233841 5743906 Cphy_0965 Clostridium phytofermentans ISDg uridine kinase YP_001558086.1 1233227 R 357809 CDS YP_001558087.1 160879119 5743907 1234462..1234827 1 NC_010001.1 hypothetical protein 1234827 5743907 Cphy_0966 Clostridium phytofermentans ISDg hypothetical protein YP_001558087.1 1234462 D 357809 CDS YP_001558088.1 160879120 5743908 1235059..1235976 1 NC_010001.1 KEGG: cdf:CD1511 hypothetical protein; hypothetical protein 1235976 5743908 Cphy_0967 Clostridium phytofermentans ISDg hypothetical protein YP_001558088.1 1235059 D 357809 CDS YP_001558089.1 160879121 5743909 1236682..1237503 1 NC_010001.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_4919 nitroreductase; nitroreductase 1237503 5743909 Cphy_0968 Clostridium phytofermentans ISDg nitroreductase YP_001558089.1 1236682 D 357809 CDS YP_001558090.1 160879122 5743910 complement(1237636..1238337) 1 NC_010001.1 KEGG: cpr:CPR_0544 cysteine-rich domain family; hypothetical protein 1238337 5743910 Cphy_0969 Clostridium phytofermentans ISDg hypothetical protein YP_001558090.1 1237636 R 357809 CDS YP_001558091.1 160879123 5743911 complement(1238364..1239662) 1 NC_010001.1 KEGG: cac:CAC0729 hypothetical protein; hypothetical protein 1239662 5743911 Cphy_0970 Clostridium phytofermentans ISDg hypothetical protein YP_001558091.1 1238364 R 357809 CDS YP_001558092.1 160879124 5743912 1239888..1240298 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cdf:CD3352 AraC-family transcriptional regulator; AraC family transcriptional regulator 1240298 5743912 Cphy_0971 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001558092.1 1239888 D 357809 CDS YP_001558093.1 160879125 5743913 1240295..1240876 1 NC_010001.1 PFAM: peptidase S14 ClpP; KEGG: cpr:CPR_1385 ATP-dependent Clp protease, proteolytic subunit ClpP; endopeptidase Clp 1240876 5743913 Cphy_0972 Clostridium phytofermentans ISDg endopeptidase Clp YP_001558093.1 1240295 D 357809 CDS YP_001558094.1 160879126 5743914 1241144..1242187 1 NC_010001.1 PFAM: alpha/beta hydrolase fold; KEGG: bcz:BCZK2148 hydrolase, alpha/beta fold family; alpha/beta hydrolase 1242187 5743914 Cphy_0973 Clostridium phytofermentans ISDg alpha/beta hydrolase YP_001558094.1 1241144 D 357809 CDS YP_001558095.1 160879127 5743915 1242595..1243308 1 NC_010001.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: cdf:CD1089 two-component response regulator; LytTR family two component transcriptional regulator 1243308 5743915 Cphy_0974 Clostridium phytofermentans ISDg LytTR family two component transcriptional regulator YP_001558095.1 1242595 D 357809 CDS YP_001558096.1 160879128 5743916 1243305..1244033 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; KEGG: cbh:CLC_1104 sensor histidine kinase; signal transduction histidine kinase regulating citrate/malate metabolism 1244033 5743916 Cphy_0975 Clostridium phytofermentans ISDg signal transduction histidine kinase regulating citrate/malate metabolism YP_001558096.1 1243305 D 357809 CDS YP_001558097.1 160879129 5743918 1245274..1246302 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH2664 ABC transporter ATP-binding protein; ABC transporter 1246302 5743918 Cphy_0978 Clostridium phytofermentans ISDg ABC transporter YP_001558097.1 1245274 D 357809 CDS YP_001558098.1 160879130 5743919 1246284..1247090 1 NC_010001.1 PFAM: protein of unknown function DUF990; KEGG: cpr:CPR_0171 ABC transporter, permease; hypothetical protein 1247090 5743919 Cphy_0979 Clostridium phytofermentans ISDg hypothetical protein YP_001558098.1 1246284 D 357809 CDS YP_001558099.1 160879131 5743920 1247094..1247906 1 NC_010001.1 PFAM: protein of unknown function DUF990; KEGG: gtn:GTNG_0486 ABC transporter (permease); hypothetical protein 1247906 5743920 Cphy_0980 Clostridium phytofermentans ISDg hypothetical protein YP_001558099.1 1247094 D 357809 CDS YP_001558100.1 160879132 5743921 1248022..1248516 1 NC_010001.1 KEGG: tde:TDE1724 hypothetical protein; hypothetical protein 1248516 5743921 Cphy_0981 Clostridium phytofermentans ISDg hypothetical protein YP_001558100.1 1248022 D 357809 CDS YP_001558101.1 160879133 5743922 1249131..1249883 1 NC_010001.1 KEGG: cac:CAC0222 exodeoxyribonuclease (exoA); TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III 1249883 5743922 Cphy_0982 Clostridium phytofermentans ISDg exodeoxyribonuclease III YP_001558101.1 1249131 D 357809 CDS YP_001558102.1 160879134 5743923 1250202..1250948 1 NC_010001.1 KEGG: cpe:CPE0798 hypothetical protein; hypothetical protein 1250948 5743923 Cphy_0983 Clostridium phytofermentans ISDg hypothetical protein YP_001558102.1 1250202 D 357809 CDS YP_001558103.1 160879135 5743924 1251218..1251655 1 NC_010001.1 hypothetical protein 1251655 5743924 Cphy_0984 Clostridium phytofermentans ISDg hypothetical protein YP_001558103.1 1251218 D 357809 CDS YP_001558104.1 160879136 5743925 1251841..1251975 1 NC_010001.1 KEGG: cno:NT01CX_2017 hypothetical protein; hypothetical protein 1251975 5743925 Cphy_0985 Clostridium phytofermentans ISDg hypothetical protein YP_001558104.1 1251841 D 357809 CDS YP_001558105.1 160879137 5743926 1252151..1252393 1 NC_010001.1 hypothetical protein 1252393 5743926 Cphy_0986 Clostridium phytofermentans ISDg hypothetical protein YP_001558105.1 1252151 D 357809 CDS YP_001558106.1 160879138 5743927 1252420..1252794 1 NC_010001.1 PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin); desulfoferrodoxin ferrous iron-binding region 1252794 5743927 Cphy_0987 Clostridium phytofermentans ISDg desulfoferrodoxin ferrous iron-binding region YP_001558106.1 1252420 D 357809 CDS YP_001558107.1 160879139 5743928 1253183..1253779 1 NC_010001.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: cpf:CPF_0793 flavodoxin family protein; NAD(P)H dehydrogenase (quinone) 1253779 5743928 Cphy_0988 Clostridium phytofermentans ISDg NAD(P)H dehydrogenase (quinone) YP_001558107.1 1253183 D 357809 CDS YP_001558108.1 160879140 5743929 complement(1253941..1255362) 1 NC_010001.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bha:BH0578 transcriptional regulator (GntR family); transcriptional regulator 1255362 5743929 Cphy_0989 Clostridium phytofermentans ISDg transcriptional regulator YP_001558108.1 1253941 R 357809 CDS YP_001558109.1 160879141 5743930 1255469..1256275 1 NC_010001.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: bay:RBAM_035260 ThiD; phosphomethylpyrimidine kinase 1256275 5743930 Cphy_0990 Clostridium phytofermentans ISDg phosphomethylpyrimidine kinase YP_001558109.1 1255469 D 357809 CDS YP_001558110.1 160879142 5743931 1256464..1257372 1 NC_010001.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: cbh:CLC_0926 hypothetical protein; helix-turn-helix type 11 domain-containing protein 1257372 5743931 Cphy_0991 Clostridium phytofermentans ISDg helix-turn-helix type 11 domain-containing protein YP_001558110.1 1256464 D 357809 CDS YP_001558111.1 160879143 5743932 1257421..1257705 1 NC_010001.1 KEGG: cdf:CD1724 hypothetical protein; hypothetical protein 1257705 5743932 Cphy_0992 Clostridium phytofermentans ISDg hypothetical protein YP_001558111.1 1257421 D 357809 CDS YP_001558112.1 160879144 5743933 1257746..1258468 1 NC_010001.1 KEGG: amt:Amet_3507 hypothetical protein; hypothetical protein 1258468 5743933 Cphy_0993 Clostridium phytofermentans ISDg hypothetical protein YP_001558112.1 1257746 D 357809 CDS YP_001558113.1 160879145 5743934 1258596..1258880 1 NC_010001.1 KEGG: dsy:DSY1050 hypothetical protein; hypothetical protein 1258880 5743934 Cphy_0994 Clostridium phytofermentans ISDg hypothetical protein YP_001558113.1 1258596 D 357809 CDS YP_001558114.1 160879146 5743935 1258979..1259263 1 NC_010001.1 KEGG: dsy:DSY1051 hypothetical protein; hypothetical protein 1259263 5743935 Cphy_0995 Clostridium phytofermentans ISDg hypothetical protein YP_001558114.1 1258979 D 357809 CDS YP_001558115.1 160879147 5743936 complement(1259490..1260455) 1 NC_010001.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ssp:SSP1638 lipase; alpha/beta hydrolase 1260455 5743936 Cphy_0996 Clostridium phytofermentans ISDg alpha/beta hydrolase YP_001558115.1 1259490 R 357809 CDS YP_001558116.1 160879148 5743937 1260824..1262278 1 NC_010001.1 PFAM: protein of unknown function UPF0061; KEGG: cbh:CLC_1238 hypothetical protein; hypothetical protein 1262278 5743937 Cphy_0997 Clostridium phytofermentans ISDg hypothetical protein YP_001558116.1 1260824 D 357809 CDS YP_001558117.1 160879149 5743938 1262609..1263250 1 NC_010001.1 PFAM: protein of unknown function UPF0126; KEGG: lla:L169795 hypothetical protein; hypothetical protein 1263250 5743938 Cphy_0998 Clostridium phytofermentans ISDg hypothetical protein YP_001558117.1 1262609 D 357809 CDS YP_001558118.1 160879150 5743939 1263506..1264033 1 NC_010001.1 KEGG: amt:Amet_2129 hypothetical protein; hypothetical protein 1264033 5743939 Cphy_0999 Clostridium phytofermentans ISDg hypothetical protein YP_001558118.1 1263506 D 357809 CDS YP_001558119.1 160879151 5743940 1264310..1265803 1 NC_010001.1 PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cpf:CPF_1242 dicarboxylate transporter; C4-dicarboxylate anaerobic carrier 1265803 5743940 Cphy_1000 Clostridium phytofermentans ISDg C4-dicarboxylate anaerobic carrier YP_001558119.1 1264310 D 357809 CDS YP_001558120.1 160879152 5743941 1265962..1266237 1 NC_010001.1 hypothetical protein 1266237 5743941 Cphy_1001 Clostridium phytofermentans ISDg hypothetical protein YP_001558120.1 1265962 D 357809 CDS YP_001558121.1 160879153 5743942 1266349..1266879 1 NC_010001.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: cbh:CLC_2702 2'-5' RNA ligase; 2'-5' RNA ligase 1266879 5743942 Cphy_1002 Clostridium phytofermentans ISDg 2'-5' RNA ligase YP_001558121.1 1266349 D 357809 CDS YP_001558122.1 160879154 5743943 1267185..1268915 1 NC_010001.1 PFAM: FMN-binding domain protein; KEGG: dsy:DSY1155 probable chlorophenol reductive dehalogenase; FMN-binding domain-containing protein 1268915 5743943 Cphy_1003 Clostridium phytofermentans ISDg FMN-binding domain-containing protein YP_001558122.1 1267185 D 357809 CDS YP_001558123.1 160879155 5743944 1269352..1270377 1 NC_010001.1 PFAM: regulatory protein ArsR; KEGG: sgo:SGO_1596 transcription regulator; ArsR family transcriptional regulator 1270377 5743944 Cphy_1004 Clostridium phytofermentans ISDg ArsR family transcriptional regulator YP_001558123.1 1269352 D 357809 CDS YP_001558124.1 160879156 5743945 1270677..1271450 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tko:TK2026 ABC-type multidrug transport system, ATPase component; ABC transporter 1271450 5743945 Cphy_1005 Clostridium phytofermentans ISDg ABC transporter YP_001558124.1 1270677 D 357809 CDS YP_001558125.1 160879157 5743946 1271631..1272413 1 NC_010001.1 PFAM: ABC-2 type transporter; KEGG: mst:Msp_0196 ABC-type multidrug transport system, permease; ABC-2 type transporter 1272413 5743946 Cphy_1006 Clostridium phytofermentans ISDg ABC-2 type transporter YP_001558125.1 1271631 D 357809 CDS YP_001558126.1 160879158 5743947 1272518..1273297 1 NC_010001.1 PFAM: ABC-2 type transporter; KEGG: tpt:Tpet_1474 ABC-2 type transporter; ABC-2 type transporter 1273297 5743947 Cphy_1007 Clostridium phytofermentans ISDg ABC-2 type transporter YP_001558126.1 1272518 D 357809 CDS YP_001558127.1 160879159 5743948 1273642..1274403 1 NC_010001.1 PFAM: regulatory protein MerR; TipAS antibiotic-recognition domain protein; KEGG: dsy:DSY4240 hypothetical protein; MerR family transcriptional regulator 1274403 5743948 Cphy_1008 Clostridium phytofermentans ISDg MerR family transcriptional regulator YP_001558127.1 1273642 D 357809 CDS YP_001558128.1 160879160 5743949 1274886..1276127 1 NC_010001.1 PFAM: tRNA synthetase class II (G H P and S); KEGG: kra:Krad_0299 histidine--tRNA ligase; histidine--tRNA ligase 1276127 5743949 Cphy_1009 Clostridium phytofermentans ISDg histidine--tRNA ligase YP_001558128.1 1274886 D 357809 CDS YP_001558129.1 160879161 5743950 1276704..1277816 1 NC_010001.1 PFAM: helix-turn-helix domain protein; KEGG: mac:MA0999 hypothetical protein; XRE family transcriptional regulator 1277816 5743950 Cphy_1010 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001558129.1 1276704 D 357809 CDS YP_001558130.1 160879162 5743951 1278019..1278399 1 NC_010001.1 hypothetical protein 1278399 5743951 Cphy_1011 Clostridium phytofermentans ISDg hypothetical protein YP_001558130.1 1278019 D 357809 CDS YP_001558131.1 160879163 5743952 complement(1278635..1279747) 1 NC_010001.1 PFAM: regulatory protein GntR HTH; KEGG: gtn:GTNG_1824 transcriptional regulator; regulatory protein GntR HTH 1279747 5743952 Cphy_1012 Clostridium phytofermentans ISDg regulatory protein GntR HTH YP_001558131.1 1278635 R 357809 CDS YP_001558132.1 160879164 5743953 1280007..1281491 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: bay:RBAM_029660 YurO; extracellular solute-binding protein 1281491 5743953 Cphy_1013 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001558132.1 1280007 D 357809 CDS YP_001558133.1 160879165 5743954 1281508..1282416 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE2416 ABC-type sugar transport systems, permease components; binding-protein-dependent transport system inner membrane protein 1282416 5743954 Cphy_1014 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001558133.1 1281508 D 357809 CDS YP_001558134.1 160879166 5741851 1282416..1283258 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcz:BCZK1636 sugar ABC transporter, permease; binding-protein-dependent transport system inner membrane protein 1283258 5741851 Cphy_1015 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001558134.1 1282416 D 357809 CDS YP_001558135.1 160879167 5741852 1283280..1284356 1 NC_010001.1 hypothetical protein 1284356 5741852 Cphy_1016 Clostridium phytofermentans ISDg hypothetical protein YP_001558135.1 1283280 D 357809 CDS YP_001558136.1 160879168 5741853 1284374..1285231 1 NC_010001.1 hypothetical protein 1285231 5741853 Cphy_1017 Clostridium phytofermentans ISDg hypothetical protein YP_001558136.1 1284374 D 357809 CDS YP_001558137.1 160879169 5741854 1285247..1287442 1 NC_010001.1 hypothetical protein 1287442 5741854 Cphy_1018 Clostridium phytofermentans ISDg hypothetical protein YP_001558137.1 1285247 D 357809 CDS YP_001558138.1 160879170 5741855 1287569..1289839 1 NC_010001.1 PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: lwe:lwe2763 glycosyl transferase, family 65; Kojibiose phosphorylase 1289839 5741855 Cphy_1019 Clostridium phytofermentans ISDg Kojibiose phosphorylase YP_001558138.1 1287569 D 357809 CDS YP_001558139.1 160879171 5741856 1289839..1291104 1 NC_010001.1 hypothetical protein 1291104 5741856 Cphy_1020 Clostridium phytofermentans ISDg hypothetical protein YP_001558139.1 1289839 D 357809 CDS YP_001558140.1 160879172 5741857 1291233..1291862 1 NC_010001.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cac:CAC2614 beta-phosphoglucomutase; beta-phosphoglucomutase 1291862 5741857 Cphy_1021 Clostridium phytofermentans ISDg beta-phosphoglucomutase YP_001558140.1 1291233 D 357809 CDS YP_001558141.1 160879173 5741858 1292305..1293624 1 NC_010001.1 PFAM: Na+/H+ antiporter NhaC; KEGG: cbf:CLI_3587 Na+/H+ antiporter family protein; Na+/H+ antiporter NhaC 1293624 5741858 Cphy_1022 Clostridium phytofermentans ISDg Na+/H+ antiporter NhaC YP_001558141.1 1292305 D 357809 CDS YP_001558142.1 160879174 5741859 1294163..1294945 1 NC_010001.1 hypothetical protein 1294945 5741859 Cphy_1023 Clostridium phytofermentans ISDg hypothetical protein YP_001558142.1 1294163 D 357809 CDS YP_001558143.1 160879175 5741860 1295073..1295747 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: chy:CHY_0092 DNA-binding response regulator; two component transcriptional regulator 1295747 5741860 Cphy_1024 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001558143.1 1295073 D 357809 CDS YP_001558144.1 160879176 5741861 1295798..1297027 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: chy:CHY_0091 sensor histidine kinase; histidine kinase 1297027 5741861 Cphy_1025 Clostridium phytofermentans ISDg histidine kinase YP_001558144.1 1295798 D 357809 CDS YP_001558145.1 160879177 5741862 1297198..1297953 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:BCZK2229 ABC transporter, ATP-binding protein; ABC transporter 1297953 5741862 Cphy_1026 Clostridium phytofermentans ISDg ABC transporter YP_001558145.1 1297198 D 357809 CDS YP_001558146.1 160879178 5741863 1297956..1300316 1 NC_010001.1 PFAM: protein of unknown function DUF214; KEGG: bcz:BCZK2228 ABC transporter, permease; hypothetical protein 1300316 5741863 Cphy_1027 Clostridium phytofermentans ISDg hypothetical protein YP_001558146.1 1297956 D 357809 CDS YP_001558147.1 160879179 5741864 complement(1300463..1301665) 1 NC_010001.1 PFAM: sodium/glutamate symporter; KEGG: cno:NT01CX_2103 sodium/glutamate symporter; sodium/glutamate symporter 1301665 5741864 Cphy_1028 Clostridium phytofermentans ISDg sodium/glutamate symporter YP_001558147.1 1300463 R 357809 CDS YP_001558148.1 160879180 5741865 complement(1301846..1303036) 1 NC_010001.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: tva:TVAG_422780 alcohol dehydrogensae, Pfam: Fe-ADH DHQ_synthase PROSITE: COPPER_BLUE ADH_IRON_1; iron-containing alcohol dehydrogenase 1303036 5741865 Cphy_1029 Clostridium phytofermentans ISDg iron-containing alcohol dehydrogenase YP_001558148.1 1301846 R 357809 CDS YP_001558149.1 160879181 5741866 1303422..1303622 1 NC_010001.1 KEGG: cac:CAC1006 MutT-like (NUDIX) hydrolase; hypothetical protein 1303622 5741866 Cphy_1030 Clostridium phytofermentans ISDg hypothetical protein YP_001558149.1 1303422 D 357809 CDS YP_001558150.1 160879182 5741867 1303651..1304244 1 NC_010001.1 hypothetical protein 1304244 5741867 Cphy_1031 Clostridium phytofermentans ISDg hypothetical protein YP_001558150.1 1303651 D 357809 CDS YP_001558151.1 160879183 5741868 1304261..1305217 1 NC_010001.1 PFAM: PfkB domain protein; KEGG: cbh:CLC_1712 kinase, PfkB family; ribokinase-like domain-containing protein 1305217 5741868 Cphy_1032 Clostridium phytofermentans ISDg ribokinase-like domain-containing protein YP_001558151.1 1304261 D 357809 CDS YP_001558152.1 160879184 5741869 1305814..1306302 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tde:TDE2748 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1306302 5741869 Cphy_1033 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001558152.1 1305814 D 357809 CDS YP_001558153.1 160879185 5741870 1306797..1307354 1 NC_010001.1 PFAM: NUDIX hydrolase; KEGG: lbu:LBUL_1555 NUDIX family hydrolase; NUDIX hydrolase 1307354 5741870 Cphy_1034 Clostridium phytofermentans ISDg NUDIX hydrolase YP_001558153.1 1306797 D 357809 CDS YP_001558154.1 160879186 5741871 1307566..1309035 1 NC_010001.1 PFAM: chemotaxis sensory transducer; KEGG: ctc:CTC01155 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1309035 5741871 Cphy_1035 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001558154.1 1307566 D 357809 CDS YP_001558155.1 160879187 5741872 1309148..1309444 1 NC_010001.1 hypothetical protein 1309444 5741872 Cphy_1036 Clostridium phytofermentans ISDg hypothetical protein YP_001558155.1 1309148 D 357809 CDS YP_001558156.1 160879188 5741873 1310081..1311613 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: btl:BALH_4611 ABC transporter, ATP-binding protein; ABC transporter 1311613 5741873 Cphy_1037 Clostridium phytofermentans ISDg ABC transporter YP_001558156.1 1310081 D 357809 CDS YP_001558157.1 160879189 5741874 complement(1311750..1312103) 1 NC_010001.1 hypothetical protein 1312103 5741874 Cphy_1038 Clostridium phytofermentans ISDg hypothetical protein YP_001558157.1 1311750 R 357809 CDS YP_001558158.1 160879190 5741875 complement(1312192..1313139) 1 NC_010001.1 PFAM: protein of unknown function DUF161; KEGG: tte:TTE2159 hypothetical protein; hypothetical protein 1313139 5741875 Cphy_1039 Clostridium phytofermentans ISDg hypothetical protein YP_001558158.1 1312192 R 357809 CDS YP_001558159.1 160879191 5741876 1313619..1314086 1 NC_010001.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: lac:LBA0722 protein-tyrosine phosphatase; protein tyrosine phosphatase 1314086 5741876 Cphy_1040 Clostridium phytofermentans ISDg protein tyrosine phosphatase YP_001558159.1 1313619 D 357809 CDS YP_001558160.1 160879192 5741877 1314142..1314855 1 NC_010001.1 PFAM: pseudouridine synthase; KEGG: cdf:CD3582 pseudouridylate synthase; pseudouridine synthase 1314855 5741877 Cphy_1041 Clostridium phytofermentans ISDg pseudouridine synthase YP_001558160.1 1314142 D 357809 CDS YP_001558161.1 160879193 5741878 1315052..1315261 1 NC_010001.1 hypothetical protein 1315261 5741878 Cphy_1042 Clostridium phytofermentans ISDg hypothetical protein YP_001558161.1 1315052 D 357809 CDS YP_001558162.1 160879194 5741879 1315254..1316147 1 NC_010001.1 PFAM: Radical SAM domain protein; KEGG: cbe:Cbei_1527 radical SAM domain protein; radical SAM domain-containing protein 1316147 5741879 Cphy_1043 Clostridium phytofermentans ISDg radical SAM domain-containing protein YP_001558162.1 1315254 D 357809 CDS YP_001558163.1 160879195 5741880 1316291..1316473 1 NC_010001.1 hypothetical protein 1316473 5741880 Cphy_1044 Clostridium phytofermentans ISDg hypothetical protein YP_001558163.1 1316291 D 357809 CDS YP_001558164.1 160879196 5741881 1316927..1317427 1 NC_010001.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cth:Cthe_1438 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1317427 5741881 Cphy_1045 Clostridium phytofermentans ISDg ECF subfamily RNA polymerase sigma-24 factor YP_001558164.1 1316927 D 357809 CDS YP_001558165.1 160879197 5741882 1317414..1318310 1 NC_010001.1 KEGG: cth:Cthe_1437 hypothetical protein; hypothetical protein 1318310 5741882 Cphy_1046 Clostridium phytofermentans ISDg hypothetical protein YP_001558165.1 1317414 D 357809 CDS YP_001558166.1 160879198 5741883 1318430..1318669 1 NC_010001.1 TIGRFAM: holin, SPP1 family; PFAM: Holin SPP1 family protein; KEGG: lla:L16574 holin; SPP1 family holin 1318669 5741883 Cphy_1047 Clostridium phytofermentans ISDg SPP1 family holin YP_001558166.1 1318430 D 357809 CDS YP_001558167.1 160879199 5741884 1319045..1320175 1 NC_010001.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC3276 dehydrogenase; oxidoreductase domain-containing protein 1320175 5741884 Cphy_1048 Clostridium phytofermentans ISDg oxidoreductase domain-containing protein YP_001558167.1 1319045 D 357809 CDS YP_001558168.1 160879200 5741885 1320187..1321158 1 NC_010001.1 PFAM: aldo/keto reductase; KEGG: ava:Ava_4145 aldo/keto reductase; aldo/keto reductase 1321158 5741885 Cphy_1049 Clostridium phytofermentans ISDg aldo/keto reductase YP_001558168.1 1320187 D 357809 CDS YP_001558169.1 160879201 5741886 1321179..1322210 1 NC_010001.1 PFAM: aldo/keto reductase; KEGG: cbe:Cbei_3134 aldo/keto reductase; aldo/keto reductase 1322210 5741886 Cphy_1050 Clostridium phytofermentans ISDg aldo/keto reductase YP_001558169.1 1321179 D 357809 CDS YP_001558170.1 160879202 5741887 complement(1322411..1323727) 1 NC_010001.1 PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cdf:CD2663 signaling protein; diguanylate cyclase/phosphodiesterase 1323727 5741887 Cphy_1051 Clostridium phytofermentans ISDg diguanylate cyclase/phosphodiesterase YP_001558170.1 1322411 R 357809 CDS YP_001558171.1 160879203 5741888 1323957..1324958 1 NC_010001.1 PFAM: protein of unknown function DUF1113; KEGG: bad:BAD_0916 hypothetical protein; hypothetical protein 1324958 5741888 Cphy_1052 Clostridium phytofermentans ISDg hypothetical protein YP_001558171.1 1323957 D 357809 CDS YP_001558172.1 160879204 5741889 1325075..1326331 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cth:Cthe_0298 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1326331 5741889 Cphy_1053 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001558172.1 1325075 D 357809 CDS YP_001558173.1 160879205 5741890 1326734..1327660 1 NC_010001.1 KEGG: csc:Csac_0437 hypothetical protein; hypothetical protein 1327660 5741890 Cphy_1054 Clostridium phytofermentans ISDg hypothetical protein YP_001558173.1 1326734 D 357809 CDS YP_001558174.1 160879206 5741891 1327816..1329480 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component; ABC transporter 1329480 5741891 Cphy_1055 Clostridium phytofermentans ISDg ABC transporter YP_001558174.1 1327816 D 357809 CDS YP_001558175.1 160879207 5741892 1329474..1331114 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component; ABC transporter related 1331114 5741892 Cphy_1056 Clostridium phytofermentans ISDg ABC transporter related YP_001558175.1 1329474 D 357809 CDS YP_001558176.1 160879208 5741893 1331318..1332256 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpe:CPE0707 probable ABC transporter; ABC transporter 1332256 5741893 Cphy_1057 Clostridium phytofermentans ISDg ABC transporter YP_001558176.1 1331318 D 357809 CDS YP_001558177.1 160879209 5741894 1332237..1333574 1 NC_010001.1 KEGG: sab:SAB2218c probable membrane protein; ABC-type Na+ efflux pump permease component-like protein 1333574 5741894 Cphy_1058 Clostridium phytofermentans ISDg ABC-type Na+ efflux pump permease component-like protein YP_001558177.1 1332237 D 357809 CDS YP_001558178.1 160879210 5741895 1333598..1334971 1 NC_010001.1 KEGG: bay:RBAM_010140 YhaP; Na+ efflux pump permease-like protein 1334971 5741895 Cphy_1059 Clostridium phytofermentans ISDg Na+ efflux pump permease-like protein YP_001558178.1 1333598 D 357809 CDS YP_001558179.1 160879211 5741896 1335283..1336341 1 NC_010001.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: smd:Smed_5753 regulatory protein LacI; LacI family transcriptional regulator 1336341 5741896 Cphy_1060 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001558179.1 1335283 D 357809 CDS YP_001558180.1 160879212 5741897 1336470..1337546 1 NC_010001.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 1337546 5741897 Cphy_1061 Clostridium phytofermentans ISDg mannonate dehydratase YP_001558180.1 1336470 D 357809 CDS YP_001558181.1 160879213 5741898 1337568..1339187 1 NC_010001.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: amt:Amet_3783 mannitol dehydrogenase, C-terminal domain; mannitol dehydrogenase 1339187 5741898 Cphy_1062 Clostridium phytofermentans ISDg mannitol dehydrogenase YP_001558181.1 1337568 D 357809 CDS YP_001558182.1 160879214 5741899 1339609..1343400 1 NC_010001.1 KEGG: bth:BT_0447 S-layer related protein precursor, sialic acid-specific 9-O-acetylesterase; hypothetical protein 1343400 5741899 Cphy_1063 Clostridium phytofermentans ISDg hypothetical protein YP_001558182.1 1339609 D 357809 CDS YP_001558183.1 160879215 5741900 complement(1343506..1344645) 1 NC_010001.1 PFAM: metallophosphoesterase; KEGG: cac:CAC3027 predicted phosphohydrolase; metallophosphoesterase 1344645 5741900 Cphy_1064 Clostridium phytofermentans ISDg metallophosphoesterase YP_001558183.1 1343506 R 357809 CDS YP_001558184.1 160879216 5741901 1344844..1345083 1 NC_010001.1 hypothetical protein 1345083 5741901 Cphy_1065 Clostridium phytofermentans ISDg hypothetical protein YP_001558184.1 1344844 D 357809 CDS YP_001558185.1 160879217 5741902 1345519..1347243 1 NC_010001.1 PFAM: Na+/H+ antiporter NhaC; KEGG: drm:Dred_1645 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 1347243 5741902 Cphy_1066 Clostridium phytofermentans ISDg Na+/H+ antiporter NhaC YP_001558185.1 1345519 D 357809 CDS YP_001558186.1 160879218 5741903 1348080..1349441 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pho:PH0577 damage-inducible protein; MATE efflux family protein 1349441 5741903 Cphy_1067 Clostridium phytofermentans ISDg MATE efflux family protein YP_001558186.1 1348080 D 357809 CDS YP_001558187.1 160879219 5741904 1349837..1352344 1 NC_010001.1 KEGG: dsy:DSY3435 hypothetical protein; phosphate ABC transporter periplasmic component-like protein 1352344 5741904 Cphy_1068 Clostridium phytofermentans ISDg phosphate ABC transporter periplasmic component-like protein YP_001558187.1 1349837 D 357809 CDS YP_001558188.1 160879220 5741905 1352436..1353353 1 NC_010001.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cbe:Cbei_3435 protein of unknown function DUF6, transmembrane; hypothetical protein 1353353 5741905 Cphy_1069 Clostridium phytofermentans ISDg hypothetical protein YP_001558188.1 1352436 D 357809 CDS YP_001558189.1 160879221 5741906 1353365..1354357 1 NC_010001.1 PFAM: protein of unknown function DUF161; KEGG: ctc:CTC02511 transporter; hypothetical protein 1354357 5741906 Cphy_1070 Clostridium phytofermentans ISDg hypothetical protein YP_001558189.1 1353365 D 357809 CDS YP_001558190.1 160879222 5741907 1354865..1357051 1 NC_010001.1 PFAM: glycoside hydrolase family 26; type 3a cellulose-binding domain protein; Carbohydrate binding family 6; KEGG: chu:CHU_0353 CHU large protein; candidate b-mannanase, glycoside hydrolase family 26 protein; glycoside hydrolase family protein 1357051 5741907 Cphy_1071 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001558190.1 1354865 D 357809 CDS YP_001558191.1 160879223 5741909 1358682..1360004 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: cgt:cgR_2367 hypothetical protein; extracellular solute-binding protein 1360004 5741909 Cphy_1074 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001558191.1 1358682 D 357809 CDS YP_001558192.1 160879224 5741910 1360064..1360906 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cgb:cg2704 ABC-type sugar transport system, permease component; binding-protein-dependent transport systems inner membrane component 1360906 5741910 Cphy_1075 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001558192.1 1360064 D 357809 CDS YP_001558193.1 160879225 5741911 1360906..1361769 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cgt:cgR_2364 hypothetical protein; binding-protein-dependent transport system inner membrane protein 1361769 5741911 Cphy_1076 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001558193.1 1360906 D 357809 CDS YP_001558194.1 160879226 5741912 1361911..1362948 1 NC_010001.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cno:NT01CX_0963 catabolite control protein A; LacI family transcriptional regulator 1362948 5741912 Cphy_1077 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001558194.1 1361911 D 357809 CDS YP_001558195.1 160879227 5741913 1362979..1363560 1 NC_010001.1 hypothetical protein 1363560 5741913 Cphy_1078 Clostridium phytofermentans ISDg hypothetical protein YP_001558195.1 1362979 D 357809 CDS YP_001558196.1 160879228 5741914 1363890..1364750 1 NC_010001.1 KEGG: dsy:DSY0724 hypothetical protein; hypothetical protein 1364750 5741914 Cphy_1079 Clostridium phytofermentans ISDg hypothetical protein YP_001558196.1 1363890 D 357809 CDS YP_001558197.1 160879229 5741915 1364747..1365703 1 NC_010001.1 PFAM: peptidase U32; KEGG: eba:ebA5191 conserved hypothetical protein, predicted peptidase U32 family; peptidase U32 1365703 5741915 Cphy_1080 Clostridium phytofermentans ISDg peptidase U32 YP_001558197.1 1364747 D 357809 CDS YP_001558198.1 160879230 5741916 complement(1365705..1367327) 1 NC_010001.1 KEGG: mlo:mll9509 regulatory components of sensory transduction system; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase 1367327 5741916 Cphy_1081 Clostridium phytofermentans ISDg diguanylate cyclase YP_001558198.1 1365705 R 357809 CDS YP_001558199.1 160879231 5741917 complement(1367343..1368686) 1 NC_010001.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mmw:Mmwyl1_2733 periplasmic ligand-binding sensor protein; diguanylate cyclase 1368686 5741917 Cphy_1082 Clostridium phytofermentans ISDg diguanylate cyclase YP_001558199.1 1367343 R 357809 CDS YP_001558200.1 160879232 5741918 1368929..1369690 1 NC_010001.1 PFAM: ABC transporter related; KEGG: cpr:CPR_0053 antibiotic ABC transporter, ATP-binding protein; ABC transporter 1369690 5741918 Cphy_1083 Clostridium phytofermentans ISDg ABC transporter YP_001558200.1 1368929 D 357809 CDS YP_001558201.1 160879233 5741919 1369861..1371309 1 NC_010001.1 PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: amt:Amet_4762 peptidase M1, membrane alanine aminopeptidase-like protein; peptidase M1 membrane alanine aminopeptidase 1371309 5741919 Cphy_1084 Clostridium phytofermentans ISDg peptidase M1 membrane alanine aminopeptidase YP_001558201.1 1369861 D 357809 CDS YP_001558202.1 160879234 5741920 1371406..1371780 1 NC_010001.1 PFAM: protein of unknown function DUF419; KEGG: pdi:BDI_2564 hypothetical protein; hypothetical protein 1371780 5741920 Cphy_1085 Clostridium phytofermentans ISDg hypothetical protein YP_001558202.1 1371406 D 357809 CDS YP_001558203.1 160879235 5741921 1372561..1373088 1 NC_010001.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: cbe:Cbei_1736 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1373088 5741921 Cphy_1086 Clostridium phytofermentans ISDg ECF subfamily RNA polymerase sigma-24 factor YP_001558203.1 1372561 D 357809 CDS YP_001558204.1 160879236 5741922 1373171..1374694 1 NC_010001.1 hypothetical protein 1374694 5741922 Cphy_1087 Clostridium phytofermentans ISDg hypothetical protein YP_001558204.1 1373171 D 357809 CDS YP_001558205.1 160879237 5741923 complement(1375287..1376570) 1 NC_010001.1 KEGG: bpu:BPUM_2114 possible aminotransferase; GntR family transcriptional regulator 1376570 5741923 Cphy_1088 Clostridium phytofermentans ISDg GntR family transcriptional regulator YP_001558205.1 1375287 R 357809 CDS YP_001558206.1 160879238 5741924 1377396..1378889 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: dsy:DSY1083 hypothetical protein; extracellular solute-binding protein 1378889 5741924 Cphy_1089 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001558206.1 1377396 D 357809 CDS YP_001558207.1 160879239 5741925 1378977..1379861 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1078 hypothetical protein; binding-protein-dependent transport systems inner membrane component 1379861 5741925 Cphy_1090 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001558207.1 1378977 D 357809 CDS YP_001558208.1 160879240 5741926 1379875..1380771 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_2125 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1380771 5741926 Cphy_1091 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001558208.1 1379875 D 357809 CDS YP_001558209.1 160879241 5741927 1380786..1381442 1 NC_010001.1 KEGG: dsy:DSY1080 hypothetical protein; hypothetical protein 1381442 5741927 Cphy_1092 Clostridium phytofermentans ISDg hypothetical protein YP_001558209.1 1380786 D 357809 CDS YP_001558210.1 160879242 5741928 1382755..1384071 1 NC_010001.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: btk:BT9727_1674 GTP-binding protein; GTP-binding protein HflX 1384071 5741928 Cphy_1093 Clostridium phytofermentans ISDg GTP-binding protein HflX YP_001558210.1 1382755 D 357809 CDS YP_001558211.1 160879243 5741929 1384261..1384773 1 NC_010001.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: amt:Amet_3812 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1384773 5741929 Cphy_1094 Clostridium phytofermentans ISDg ECF subfamily RNA polymerase sigma-24 factor YP_001558211.1 1384261 D 357809 CDS YP_001558212.1 160879244 5741930 1384766..1385512 1 NC_010001.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: gvi:glr2481 signal peptidase I; signal peptidase I 1385512 5741930 Cphy_1095 Clostridium phytofermentans ISDg signal peptidase I YP_001558212.1 1384766 D 357809 CDS YP_001558213.1 160879245 5741931 1385537..1386148 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bce:BC4940 ABC transporter ATP-binding protein; ABC transporter 1386148 5741931 Cphy_1096 Clostridium phytofermentans ISDg ABC transporter YP_001558213.1 1385537 D 357809 CDS YP_001558214.1 160879246 5741932 1386162..1386935 1 NC_010001.1 PFAM: conserved hypothetical protein; KEGG: btk:BT9727_4653 probable membrane protein; hypothetical protein 1386935 5741932 Cphy_1097 Clostridium phytofermentans ISDg hypothetical protein YP_001558214.1 1386162 D 357809 CDS YP_001558215.1 160879247 5741933 1387170..1388618 1 NC_010001.1 PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cpf:CPF_0767 iron-sulfur cluster-binding protein, rieske family; FAD dependent oxidoreductase 1388618 5741933 Cphy_1098 Clostridium phytofermentans ISDg FAD dependent oxidoreductase YP_001558215.1 1387170 D 357809 CDS YP_001558216.1 160879248 5741934 1388945..1389466 1 NC_010001.1 KEGG: cbe:Cbei_2796 Mug G:T/U mismatch-specific DNA glycosylase; G:T/U mismatch-specific DNA glycosylase 1389466 5741934 Cphy_1099 Clostridium phytofermentans ISDg G:T/U mismatch-specific DNA glycosylase YP_001558216.1 1388945 D 357809 CDS YP_001558217.1 160879249 5741935 1389516..1390538 1 NC_010001.1 PFAM: peptidase M42 family protein; KEGG: cpe:CPE0995 probable glucanase; peptidase M42 family protein 1390538 5741935 Cphy_1100 Clostridium phytofermentans ISDg peptidase M42 family protein YP_001558217.1 1389516 D 357809 CDS YP_001558218.1 160879250 5741936 complement(1390675..1391097) 1 NC_010001.1 hypothetical protein 1391097 5741936 Cphy_1101 Clostridium phytofermentans ISDg hypothetical protein YP_001558218.1 1390675 R 357809 CDS YP_001558219.1 160879251 5741937 complement(1391306..1392175) 1 NC_010001.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cac:CAC3466 transcriptional regulator, LysR family; LysR family transcriptional regulator 1392175 5741937 Cphy_1102 Clostridium phytofermentans ISDg LysR family transcriptional regulator YP_001558219.1 1391306 R 357809 CDS YP_001558220.1 160879252 5741938 1392551..1393522 1 NC_010001.1 PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: blo:BL1740 probable oxidoreductase; oxidoreductase domain-containing protein 1393522 5741938 Cphy_1103 Clostridium phytofermentans ISDg oxidoreductase domain-containing protein YP_001558220.1 1392551 D 357809 CDS YP_001558221.1 160879253 5741939 complement(1394178..1395782) 1 NC_010001.1 SMART: Parallel beta-helix repeat; KEGG: oih:OB0217 hypothetical protein; parallel beta-helix repeat-containing protein 1395782 5741939 Cphy_1104 Clostridium phytofermentans ISDg parallel beta-helix repeat-containing protein YP_001558221.1 1394178 R 357809 CDS YP_001558222.1 160879254 5741940 1396495..1397562 1 NC_010001.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: cac:CAC1372 cobalamin biosynthesis enzyme CobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1397562 5741940 Cphy_1105 Clostridium phytofermentans ISDg nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_001558222.1 1396495 D 357809 CDS YP_001558223.1 160879255 5741941 1397559..1398119 1 NC_010001.1 KEGG: cpr:CPR_1109 hypothetical protein; hypothetical protein 1398119 5741941 Cphy_1106 Clostridium phytofermentans ISDg hypothetical protein YP_001558223.1 1397559 D 357809 CDS YP_001558224.1 160879256 5741942 1398085..1398870 1 NC_010001.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cbe:Cbei_1265 cobalamin-5-phosphate synthase CobS; cobalamin-5-phosphate synthase CobS 1398870 5741942 Cphy_1107 Clostridium phytofermentans ISDg cobalamin-5-phosphate synthase CobS YP_001558224.1 1398085 D 357809 CDS YP_001558225.1 160879257 5741943 1398848..1399264 1 NC_010001.1 KEGG: cpr:CPR_1111 cobalamin biosynthesis protein CobU, , truncation; hypothetical protein 1399264 5741943 Cphy_1108 Clostridium phytofermentans ISDg hypothetical protein YP_001558225.1 1398848 D 357809 CDS YP_001558226.1 160879258 5741944 1399242..1399874 1 NC_010001.1 PFAM: Phosphoglycerate mutase; KEGG: cpf:CPF_1293 phosphoglycerate mutase family protein; phosphoglycerate mutase 1399874 5741944 Cphy_1109 Clostridium phytofermentans ISDg phosphoglycerate mutase YP_001558226.1 1399242 D 357809 CDS YP_001558227.1 160879259 5741945 1399902..1400921 1 NC_010001.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: cpr:CPR_1113 cobalamin biosynthesis protein CobD; cobalamin biosynthesis protein CobD 1400921 5741945 Cphy_1110 Clostridium phytofermentans ISDg cobalamin biosynthesis protein CobD YP_001558227.1 1399902 D 357809 CDS YP_001558228.1 160879260 5741946 1401078..1402166 1 NC_010001.1 PFAM: aminotransferase class I and II; KEGG: cpe:CPE1040 probable Thr-phospho decarboxylase; class I and II aminotransferase 1402166 5741946 Cphy_1111 Clostridium phytofermentans ISDg class I and II aminotransferase YP_001558228.1 1401078 D 357809 CDS YP_001558229.1 160879261 5741947 1402184..1403725 1 NC_010001.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1403725 5741947 Cphy_1112 Clostridium phytofermentans ISDg cobyric acid synthase YP_001558229.1 1402184 D 357809 CDS YP_001558230.1 160879262 5741948 1403722..1404246 1 NC_010001.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: cbe:Cbei_1263 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 1404246 5741948 Cphy_1113 Clostridium phytofermentans ISDg ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_001558230.1 1403722 D 357809 CDS YP_001558231.1 160879263 5741949 1404266..1404820 1 NC_010001.1 PFAM: NADPH-dependent FMN reductase; KEGG: dsy:DSY1214 hypothetical protein; NADPH-dependent FMN reductase 1404820 5741949 Cphy_1114 Clostridium phytofermentans ISDg NADPH-dependent FMN reductase YP_001558231.1 1404266 D 357809 CDS YP_001558232.1 160879264 5741950 1405544..1406821 1 NC_010001.1 KEGG: cbf:CLI_0591 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; seryl-tRNA synthetase 1406821 5741950 Cphy_1115 Clostridium phytofermentans ISDg seryl-tRNA synthetase YP_001558232.1 1405544 D 357809 CDS YP_001558233.1 160879265 5741951 1407094..1408464 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cpe:CPE0864 hypothetical protein; MATE efflux family protein 1408464 5741951 Cphy_1116 Clostridium phytofermentans ISDg MATE efflux family protein YP_001558233.1 1407094 D 357809 CDS YP_001558234.1 160879266 5741952 1408609..1409586 1 NC_010001.1 TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: cbe:Cbei_4903 L-lactate dehydrogenase; L-lactate dehydrogenase 1409586 5741952 Cphy_1117 Clostridium phytofermentans ISDg L-lactate dehydrogenase YP_001558234.1 1408609 D 357809 CDS YP_001558235.1 160879267 5741953 1410194..1411819 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC0558 sugar ABC transporter substrate-binding protein; extracellular solute-binding protein 1411819 5741953 Cphy_1118 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001558235.1 1410194 D 357809 CDS YP_001558236.1 160879268 5741954 1411890..1412846 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein 1412846 5741954 Cphy_1119 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001558236.1 1411890 D 357809 CDS YP_001558237.1 160879269 5741955 1412857..1413726 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1455 ABC transporter permease; binding-protein-dependent transport systems inner membrane component 1413726 5741955 Cphy_1120 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001558237.1 1412857 D 357809 CDS YP_001558238.1 160879270 5741956 1413748..1414641 1 NC_010001.1 TIGRFAM: glucokinase regulatory-like protein; PFAM: sugar isomerase (SIS); KEGG: plu:plu0403 hypothetical protein; RpiR family transcriptional regulator 1414641 5741956 Cphy_1121 Clostridium phytofermentans ISDg RpiR family transcriptional regulator YP_001558238.1 1413748 D 357809 CDS YP_001558239.1 160879271 5741957 complement(1414707..1415564) 1 NC_010001.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: amt:Amet_4190 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 1415564 5741957 Cphy_1122 Clostridium phytofermentans ISDg RpiR family transcriptional regulator YP_001558239.1 1414707 R 357809 CDS YP_001558240.1 160879272 5741958 complement(1415584..1416768) 1 NC_010001.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1416768 anmK 5741958 anmK Clostridium phytofermentans ISDg anhydro-N-acetylmuramic acid kinase YP_001558240.1 1415584 R 357809 CDS YP_001558241.1 160879273 5741959 1416904..1418049 1 NC_010001.1 PFAM: conserved hypothetical protein; KEGG: cac:CAC0185 uncharacterized membrane protein, YBBC B.subtilis ortholog; hypothetical protein 1418049 5741959 Cphy_1124 Clostridium phytofermentans ISDg hypothetical protein YP_001558241.1 1416904 D 357809 CDS YP_001558242.1 160879274 5741960 1418251..1419804 1 NC_010001.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: tte:TTE0215 Beta-glucosidase-related glycosidases; glycoside hydrolase family 3 1419804 5741960 Cphy_1125 Clostridium phytofermentans ISDg glycoside hydrolase family 3 YP_001558242.1 1418251 D 357809 CDS YP_001558243.1 160879275 5741961 1419857..1420798 1 NC_010001.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cac:CAC0183 transcriptional regulators of NagC/XylR (ROK) family, sugar kinase; BadF/BadG/BcrA/BcrD type ATPase 1420798 5741961 Cphy_1126 Clostridium phytofermentans ISDg BadF/BadG/BcrA/BcrD type ATPase YP_001558243.1 1419857 D 357809 CDS YP_001558244.1 160879276 5741962 1420791..1421288 1 NC_010001.1 KEGG: bcl:ABC0535 hypothetical protein; hypothetical protein 1421288 5741962 Cphy_1127 Clostridium phytofermentans ISDg hypothetical protein YP_001558244.1 1420791 D 357809 CDS YP_001558245.1 160879277 5741963 1421795..1422781 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH1197 ABC transporter ATP-binding protein; ABC transporter 1422781 5741963 Cphy_1128 Clostridium phytofermentans ISDg ABC transporter YP_001558245.1 1421795 D 357809 CDS YP_001558246.1 160879278 5741964 1422828..1423619 1 NC_010001.1 KEGG: sth:STH1198 ABC transporter permease; ABC transporter permease-like protein 1423619 5741964 Cphy_1129 Clostridium phytofermentans ISDg ABC transporter permease-like protein YP_001558246.1 1422828 D 357809 CDS YP_001558247.1 160879279 5741965 1423603..1424397 1 NC_010001.1 PFAM: protein of unknown function DUF990; KEGG: sth:STH1199 hypothetical protein; hypothetical protein 1424397 5741965 Cphy_1130 Clostridium phytofermentans ISDg hypothetical protein YP_001558247.1 1423603 D 357809 CDS YP_001558248.1 160879280 5741966 1424436..1424684 1 NC_010001.1 hypothetical protein 1424684 5741966 Cphy_1131 Clostridium phytofermentans ISDg hypothetical protein YP_001558248.1 1424436 D 357809 CDS YP_001558249.1 160879281 5741967 complement(1424925..1425929) 1 NC_010001.1 KEGG: rle:RL0518 solute-binding component of ABC transporter; solute-binding component of ABC transporter 1425929 5741967 Cphy_1132 Clostridium phytofermentans ISDg solute-binding component of ABC transporter YP_001558249.1 1424925 R 357809 CDS YP_001558250.1 160879282 5741968 complement(1426063..1427142) 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: ctc:CTC00906 ribose transport system permease rbsC; monosaccharide-transporting ATPase 1427142 5741968 Cphy_1133 Clostridium phytofermentans ISDg monosaccharide-transporting ATPase YP_001558250.1 1426063 R 357809 CDS YP_001558251.1 160879283 5741969 complement(1427155..1428675) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component; ABC transporter 1428675 5741969 Cphy_1134 Clostridium phytofermentans ISDg ABC transporter YP_001558251.1 1427155 R 357809 CDS YP_001558252.1 160879284 5741970 complement(1429296..1429883) 1 NC_010001.1 KEGG: btk:BT9727_0312 conserved hypothetical protein, possible methyltransferase; hypothetical protein 1429883 5741970 Cphy_1135 Clostridium phytofermentans ISDg hypothetical protein YP_001558252.1 1429296 R 357809 CDS YP_001558253.1 160879285 5741971 1430300..1432699 1 NC_010001.1 KEGG: nmu:Nmul_A0328 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1432699 5741971 Cphy_1136 Clostridium phytofermentans ISDg PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001558253.1 1430300 D 357809 CDS YP_001558254.1 160879286 5741972 1433004..1433864 1 NC_010001.1 PFAM: NUDIX hydrolase; Zinc ribbon NADH pyrophosphatase; KEGG: lpl:lp_3123 pyrophosphatase (); NUDIX hydrolase 1433864 5741972 Cphy_1137 Clostridium phytofermentans ISDg NUDIX hydrolase YP_001558254.1 1433004 D 357809 CDS YP_001558255.1 160879287 5741973 complement(1434207..1435286) 1 NC_010001.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: cth:Cthe_1516 ribosome small subunit-dependent GTPase A; ribosome small subunit-dependent GTPase A 1435286 5741973 Cphy_1138 Clostridium phytofermentans ISDg ribosome small subunit-dependent GTPase A YP_001558255.1 1434207 R 357809 CDS YP_001558256.1 160879288 5741974 1436166..1437491 1 NC_010001.1 PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: cpf:CPF_0770 aspartyl-tRNA synthetase; tRNA synthetase class II (D K and N) 1437491 5741974 Cphy_1139 Clostridium phytofermentans ISDg tRNA synthetase class II (D K and N) YP_001558256.1 1436166 D 357809 CDS YP_001558257.1 160879289 5741975 1437798..1438955 1 NC_010001.1 PFAM: lipolytic protein G-D-S-L family; KEGG: cth:Cthe_0797 glycoside hydrolase, family 5; GDSL family lipase 1438955 5741975 Cphy_1140 Clostridium phytofermentans ISDg GDSL family lipase YP_001558257.1 1437798 D 357809 CDS YP_001558258.1 160879290 5741976 1439136..1440095 1 NC_010001.1 KEGG: amt:Amet_3459 hypothetical protein; hypothetical protein 1440095 5741976 Cphy_1141 Clostridium phytofermentans ISDg hypothetical protein YP_001558258.1 1439136 D 357809 CDS YP_001558259.1 160879291 5742865 1440284..1440844 1 NC_010001.1 KEGG: dsy:DSY1749 hypothetical protein; hypothetical protein 1440844 5742865 Cphy_1142 Clostridium phytofermentans ISDg hypothetical protein YP_001558259.1 1440284 D 357809 CDS YP_001558260.1 160879292 5742866 1440909..1441574 1 NC_010001.1 KEGG: amt:Amet_2169 hypothetical protein; hypothetical protein 1441574 5742866 Cphy_1143 Clostridium phytofermentans ISDg hypothetical protein YP_001558260.1 1440909 D 357809 CDS YP_001558261.1 160879293 5742867 1441559..1442980 1 NC_010001.1 PFAM: band 7 protein; KEGG: amt:Amet_2170 band 7 protein; hypothetical protein 1442980 5742867 Cphy_1144 Clostridium phytofermentans ISDg hypothetical protein YP_001558261.1 1441559 D 357809 CDS YP_001558262.1 160879294 5742868 1443071..1444669 1 NC_010001.1 PFAM: carbohydrate kinase FGGY; KEGG: cbe:Cbei_4452 carbohydrate kinase, FGGY; carbohydrate kinase FGGY 1444669 5742868 Cphy_1145 Clostridium phytofermentans ISDg carbohydrate kinase FGGY YP_001558262.1 1443071 D 357809 CDS YP_001558263.1 160879295 5742869 1444810..1446213 1 NC_010001.1 TIGRFAM: rhamnulokinase; PFAM: carbohydrate kinase FGGY; KEGG: cbe:Cbei_0445 rhamnulokinase; rhamnulokinase 1446213 5742869 Cphy_1146 Clostridium phytofermentans ISDg rhamnulokinase YP_001558263.1 1444810 D 357809 CDS YP_001558264.1 160879296 5742870 1446441..1447691 1 NC_010001.1 catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase 1447691 5742870 Cphy_1147 Clostridium phytofermentans ISDg L-rhamnose isomerase YP_001558264.1 1446441 D 357809 CDS YP_001558265.1 160879297 5742871 1447986..1448957 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_0442 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 1448957 5742871 Cphy_1148 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001558265.1 1447986 D 357809 CDS YP_001558266.1 160879298 5742872 1448957..1449271 1 NC_010001.1 TIGRFAM: L-rhamnose 1-epimerase; PFAM: protein of unknown function DUF718; KEGG: cbe:Cbei_0452 L-rhamnose 1-epimerase; L-rhamnose 1-epimerase 1449271 5742872 Cphy_1149 Clostridium phytofermentans ISDg L-rhamnose 1-epimerase YP_001558266.1 1448957 D 357809 CDS YP_001558267.1 160879299 5742873 1449953..1450252 1 NC_010001.1 PFAM: protein of unknown function DUF77; KEGG: dsy:DSY4448 hypothetical protein; hypothetical protein 1450252 5742873 Cphy_1150 Clostridium phytofermentans ISDg hypothetical protein YP_001558267.1 1449953 D 357809 CDS YP_001558268.1 160879300 5742874 1450218..1450982 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY4447 hypothetical protein; binding-protein-dependent transport systems inner membrane component 1450982 5742874 Cphy_1151 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001558268.1 1450218 D 357809 CDS YP_001558269.1 160879301 5742875 1451136..1452158 1 NC_010001.1 PFAM: NMT1/THI5 like domain protein; KEGG: dsy:DSY4446 hypothetical protein; NMT1/THI5-like domain-containing protein 1452158 5742875 Cphy_1152 Clostridium phytofermentans ISDg NMT1/THI5-like domain-containing protein YP_001558269.1 1451136 D 357809 CDS YP_001558270.1 160879302 5742876 1452167..1452907 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY4445 hypothetical protein; ABC transporter 1452907 5742876 Cphy_1153 Clostridium phytofermentans ISDg ABC transporter YP_001558270.1 1452167 D 357809 CDS YP_001558271.1 160879303 5742877 1453274..1455127 1 NC_010001.1 KEGG: cac:CAC2687 RecQ protein, superfamily II DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 1455127 5742877 Cphy_1154 Clostridium phytofermentans ISDg ATP-dependent DNA helicase RecQ YP_001558271.1 1453274 D 357809 CDS YP_001558272.1 160879304 5742878 1455562..1461411 1 NC_010001.1 PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: cpe:CPE1368 hypothetical protein; OB-fold tRNA/helicase-type nucleic acid binding-protein 1461411 5742878 Cphy_1155 Clostridium phytofermentans ISDg OB-fold tRNA/helicase-type nucleic acid binding-protein YP_001558272.1 1455562 D 357809 CDS YP_001558273.1 160879305 5742879 1461517..1462674 1 NC_010001.1 PFAM: YibE/F family protein; KEGG: ckl:CKL_1697 hypothetical protein; YibE/F family protein 1462674 5742879 Cphy_1156 Clostridium phytofermentans ISDg YibE/F family protein YP_001558273.1 1461517 D 357809 CDS YP_001558274.1 160879306 5742880 1463388..1470152 1 NC_010001.1 PFAM: nucleic acid binding OB-fold tRNA/helicase-type; SMART: Ig domain protein group 2 domain protein; KEGG: cpe:CPE1368 hypothetical protein; nucleic acid binding OB-fold tRNA/helicase-type 1470152 5742880 Cphy_1157 Clostridium phytofermentans ISDg nucleic acid binding OB-fold tRNA/helicase-type YP_001558274.1 1463388 D 357809 CDS YP_001558275.1 160879307 5742881 complement(1470229..1470873) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mac:MA1701 acetyltransferase; N-acetyltransferase GCN5 1470873 5742881 Cphy_1158 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001558275.1 1470229 R 357809 CDS YP_001558276.1 160879308 5742882 complement(1471287..1471604) 1 NC_010001.1 hypothetical protein 1471604 5742882 Cphy_1159 Clostridium phytofermentans ISDg hypothetical protein YP_001558276.1 1471287 R 357809 CDS YP_001558277.1 160879309 5742883 1472040..1473704 1 NC_010001.1 PFAM: DNA mismatch repair protein MutS domain protein; KEGG: cpr:CPR_0886 MutS domain V protein; DNA mismatch repair protein MutS domain-containing protein 1473704 5742883 Cphy_1160 Clostridium phytofermentans ISDg DNA mismatch repair protein MutS domain-containing protein YP_001558277.1 1472040 D 357809 CDS YP_001558278.1 160879310 5742884 complement(1474017..1474178) 1 NC_010001.1 KEGG: cpf:CPF_1453 heavy-metal-associated domain protein; heavy metal-binding domain-containing protein 1474178 5742884 Cphy_1161 Clostridium phytofermentans ISDg heavy metal-binding domain-containing protein YP_001558278.1 1474017 R 357809 CDS YP_001558279.1 160879311 5742885 complement(1474250..1474462) 1 NC_010001.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: cbf:CLI_1767 cold shock protein; cold-shock DNA-binding domain-containing protein 1474462 5742885 Cphy_1162 Clostridium phytofermentans ISDg cold-shock DNA-binding domain-containing protein YP_001558279.1 1474250 R 357809 CDS YP_001558280.1 160879312 5742886 1475031..1476437 1 NC_010001.1 PFAM: glycoside hydrolase family 5; KEGG: cth:Cthe_2872 glycoside hydrolase, family 5; cellulase 1476437 5742886 Cphy_1163 Clostridium phytofermentans ISDg cellulase YP_001558280.1 1475031 D 357809 CDS YP_001558281.1 160879313 5742887 1476825..1477616 1 NC_010001.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 1477616 5742887 Cphy_1164 Clostridium phytofermentans ISDg gluconate 5-dehydrogenase YP_001558281.1 1476825 D 357809 CDS YP_001558282.1 160879314 5742888 complement(1477822..1478658) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: cpr:CPR_0474 transcriptional regulator, AraC family; AraC family transcriptional regulator 1478658 5742888 Cphy_1165 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001558282.1 1477822 R 357809 CDS YP_001558283.1 160879315 5742889 1479120..1480112 1 NC_010001.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cbe:Cbei_4420 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 1480112 5742889 Cphy_1166 Clostridium phytofermentans ISDg UDP-glucose 4-epimerase YP_001558283.1 1479120 D 357809 CDS YP_001558284.1 160879316 5742890 1480142..1481731 1 NC_010001.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 1481731 5742890 Cphy_1167 Clostridium phytofermentans ISDg galactose-1-phosphate uridylyltransferase YP_001558284.1 1480142 D 357809 CDS YP_001558285.1 160879317 5742891 complement(1481693..1482493) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_2943 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 1482493 5742891 Cphy_1168 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001558285.1 1481693 R 357809 CDS YP_001558286.1 160879318 5742892 1482901..1484400 1 NC_010001.1 PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: gtn:GTNG_1791 alpha-L-arabinofuranosidase; alpha-N-arabinofuranosidase 1484400 5742892 Cphy_1169 Clostridium phytofermentans ISDg alpha-N-arabinofuranosidase YP_001558286.1 1482901 D 357809 CDS YP_001558287.1 160879319 5742893 1484900..1485490 1 NC_010001.1 hypothetical protein 1485490 5742893 Cphy_1170 Clostridium phytofermentans ISDg hypothetical protein YP_001558287.1 1484900 D 357809 CDS YP_001558288.1 160879320 5742894 1485517..1485879 1 NC_010001.1 hypothetical protein 1485879 5742894 Cphy_1171 Clostridium phytofermentans ISDg hypothetical protein YP_001558288.1 1485517 D 357809 CDS YP_001558289.1 160879321 5742895 1486134..1487822 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_4466 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1487822 5742895 Cphy_1172 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001558289.1 1486134 D 357809 CDS YP_001558290.1 160879322 5742896 1488340..1488792 1 NC_010001.1 hypothetical protein 1488792 5742896 Cphy_1173 Clostridium phytofermentans ISDg hypothetical protein YP_001558290.1 1488340 D 357809 CDS YP_001558291.1 160879323 5742897 1489322..1491925 1 NC_010001.1 KEGG: cno:NT01CX_0498 pyruvate formate-lyase; TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; pyruvate formate-lyase 1491925 5742897 Cphy_1174 Clostridium phytofermentans ISDg pyruvate formate-lyase YP_001558291.1 1489322 D 357809 CDS YP_001558292.1 160879324 5742898 1491961..1492752 1 NC_010001.1 KEGG: cno:NT01CX_0497 pyruvate formate-lyase; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein; glycyl-radical activating family protein 1492752 5742898 Cphy_1175 Clostridium phytofermentans ISDg glycyl-radical activating family protein YP_001558292.1 1491961 D 357809 CDS YP_001558293.1 160879325 5742899 1492951..1493310 1 NC_010001.1 PFAM: microcompartments protein; KEGG: ckl:CKL_3417 hypothetical protein; microcompartments protein 1493310 5742899 Cphy_1176 Clostridium phytofermentans ISDg microcompartments protein YP_001558293.1 1492951 D 357809 CDS YP_001558294.1 160879326 5742900 1493642..1494436 1 NC_010001.1 PFAM: class II aldolase/adducin family protein; KEGG: cpf:CPF_1051 L-fuculose phosphate aldolase; class II aldolase/adducin family protein 1494436 5742900 Cphy_1177 Clostridium phytofermentans ISDg class II aldolase/adducin family protein YP_001558294.1 1493642 D 357809 CDS YP_001558295.1 160879327 5742901 1494484..1495872 1 NC_010001.1 PFAM: Aldehyde Dehydrogenase_; KEGG: rru:Rru_A0914 aldehyde dehydrogenase; aldehyde dehydrogenase 1495872 5742901 Cphy_1178 Clostridium phytofermentans ISDg aldehyde dehydrogenase YP_001558295.1 1494484 D 357809 CDS YP_001558296.1 160879328 5742902 1495895..1497094 1 NC_010001.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ooe:OEOE_0394 threonine dehydrogenase or related Zn-dependent dehydrogenase; alcohol dehydrogenase 1497094 5742902 Cphy_1179 Clostridium phytofermentans ISDg alcohol dehydrogenase YP_001558296.1 1495895 D 357809 CDS YP_001558297.1 160879329 5742903 1497110..1497424 1 NC_010001.1 PFAM: microcompartments protein; KEGG: spc:Sputcn32_0210 microcompartments protein; microcompartments protein 1497424 5742903 Cphy_1180 Clostridium phytofermentans ISDg microcompartments protein YP_001558297.1 1497110 D 357809 CDS YP_001558298.1 160879330 5742904 1497514..1497816 1 NC_010001.1 PFAM: microcompartments protein; KEGG: aha:AHA_1336 bacterial microcompartments family protein; microcompartments protein 1497816 5742904 Cphy_1181 Clostridium phytofermentans ISDg microcompartments protein YP_001558298.1 1497514 D 357809 CDS YP_001558299.1 160879331 5742905 1497843..1498337 1 NC_010001.1 PFAM: microcompartments protein; KEGG: ckl:CKL_1072 predicted microcompartment protein; microcompartments protein 1498337 5742905 Cphy_1182 Clostridium phytofermentans ISDg microcompartments protein YP_001558299.1 1497843 D 357809 CDS YP_001558300.1 160879332 5742906 1498518..1499159 1 NC_010001.1 PFAM: Propanediol utilization protein; KEGG: tma:TM0375 hypothetical protein; propanediol utilization protein 1499159 5742906 Cphy_1183 Clostridium phytofermentans ISDg propanediol utilization protein YP_001558300.1 1498518 D 357809 CDS YP_001558301.1 160879333 5742907 1499200..1499460 1 NC_010001.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: lwe:lwe1121 ethanolamine and carbon dioxide metabolism; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 1499460 5742907 Cphy_1184 Clostridium phytofermentans ISDg ethanolamine utilization protein EutN/carboxysome structural protein Ccml YP_001558301.1 1499200 D 357809 CDS YP_001558302.1 160879334 5742908 1499464..1500792 1 NC_010001.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: ecw:EcE24377A_2294 propanediol utilization protein PduS; respiratory-chain NADH dehydrogenase domain-containing protein 1500792 5742908 Cphy_1185 Clostridium phytofermentans ISDg respiratory-chain NADH dehydrogenase domain-containing protein YP_001558302.1 1499464 D 357809 CDS YP_001558303.1 160879335 5742909 1500877..1501425 1 NC_010001.1 PFAM: microcompartments protein; KEGG: drm:Dred_3269 microcompartments protein; microcompartments protein 1501425 5742909 Cphy_1186 Clostridium phytofermentans ISDg microcompartments protein YP_001558303.1 1500877 D 357809 CDS YP_001558304.1 160879336 5742910 1501898..1502671 1 NC_010001.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: cbe:Cbei_0453 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 1502671 5742910 Cphy_1187 Clostridium phytofermentans ISDg DeoR family transcriptional regulator YP_001558304.1 1501898 D 357809 CDS YP_001558305.1 160879337 5743287 1502817..1505510 1 NC_010001.1 PFAM: TPR repeat-containing protein; peptidase S41; RDD domain containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cth:Cthe_2680 peptidase S41; peptidase S41 1505510 5743287 Cphy_1188 Clostridium phytofermentans ISDg peptidase S41 YP_001558305.1 1502817 D 357809 CDS YP_001558306.1 160879338 5743288 1506141..1507238 1 NC_010001.1 PFAM: peptidase domain protein; peptidase domain-containing protein 1507238 5743288 Cphy_1189 Clostridium phytofermentans ISDg peptidase domain-containing protein YP_001558306.1 1506141 D 357809 CDS YP_001558307.1 160879339 5743289 1507360..1507611 1 NC_010001.1 KEGG: dsy:DSY0345 hypothetical protein; hypothetical protein 1507611 5743289 Cphy_1190 Clostridium phytofermentans ISDg hypothetical protein YP_001558307.1 1507360 D 357809 CDS YP_001558308.1 160879340 5743290 complement(1507722..1508087) 1 NC_010001.1 PFAM: iron dependent repressor; KEGG: cbe:Cbei_3088 iron dependent repressor; DtxR family iron dependent repressor 1508087 5743290 Cphy_1191 Clostridium phytofermentans ISDg DtxR family iron dependent repressor YP_001558308.1 1507722 R 357809 CDS YP_001558309.1 160879341 5743291 1508346..1508567 1 NC_010001.1 PFAM: FeoA family protein; KEGG: cbe:Cbei_4198 FeoA family protein; FeoA family protein 1508567 5743291 Cphy_1192 Clostridium phytofermentans ISDg FeoA family protein YP_001558309.1 1508346 D 357809 CDS YP_001558310.1 160879342 5743292 1508633..1508854 1 NC_010001.1 PFAM: FeoA family protein; KEGG: cbe:Cbei_4197 FeoA family protein; FeoA family protein 1508854 5743292 Cphy_1193 Clostridium phytofermentans ISDg FeoA family protein YP_001558310.1 1508633 D 357809 CDS YP_001558311.1 160879343 5743293 1509047..1511191 1 NC_010001.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: dsy:DSY2320 ferrous iron transport protein B; ferrous iron transport protein B 1511191 5743293 Cphy_1194 Clostridium phytofermentans ISDg ferrous iron transport protein B YP_001558311.1 1509047 D 357809 CDS YP_001558312.1 160879344 5743294 1511472..1511957 1 NC_010001.1 KEGG: spe:Spro_1236 ferric uptake regulator, Fur family; ferric uptake regulator family protein 1511957 5743294 Cphy_1195 Clostridium phytofermentans ISDg ferric uptake regulator family protein YP_001558312.1 1511472 D 357809 CDS YP_001558313.1 160879345 5743295 1511954..1512241 1 NC_010001.1 KEGG: cbe:Cbei_3087 hypothetical protein; hypothetical protein 1512241 5743295 Cphy_1196 Clostridium phytofermentans ISDg hypothetical protein YP_001558313.1 1511954 D 357809 CDS YP_001558314.1 160879346 5743296 1512878..1514881 1 NC_010001.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cno:NT01CX_0071 D-alanyl-D-alanine carboxypeptidase; peptidoglycan binding domain-containing protein 1514881 5743296 Cphy_1197 Clostridium phytofermentans ISDg peptidoglycan binding domain-containing protein YP_001558314.1 1512878 D 357809 CDS YP_001558315.1 160879347 5743297 1515105..1515992 1 NC_010001.1 KEGG: bca:BCE_5388 hypothetical protein; hypothetical protein 1515992 5743297 Cphy_1198 Clostridium phytofermentans ISDg hypothetical protein YP_001558315.1 1515105 D 357809 CDS YP_001558316.1 160879348 5743298 1516055..1516924 1 NC_010001.1 KEGG: mma:MM_0768 glycosyltransferase; glycosyltransferase 1516924 5743298 Cphy_1199 Clostridium phytofermentans ISDg glycosyltransferase YP_001558316.1 1516055 D 357809 CDS YP_001558317.1 160879349 5743299 1517016..1517669 1 NC_010001.1 hypothetical protein 1517669 5743299 Cphy_1200 Clostridium phytofermentans ISDg hypothetical protein YP_001558317.1 1517016 D 357809 CDS YP_001558318.1 160879350 5743300 1517785..1519074 1 NC_010001.1 KEGG: spd:SPD_0319 undecaprenylphosphate glucosephosphotransferase Cps2E; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 1519074 5743300 Cphy_1201 Clostridium phytofermentans ISDg exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_001558318.1 1517785 D 357809 CDS YP_001558319.1 160879351 5743301 1519203..1519721 1 NC_010001.1 PFAM: Oligosaccharide biosynthesis protein Alg14 like; KEGG: cth:Cthe_1360 polysaccharide biosynthesis protein CpsF; oligosaccharide biosynthesis protein Alg14-like protein 1519721 5743301 Cphy_1202 Clostridium phytofermentans ISDg oligosaccharide biosynthesis protein Alg14-like protein YP_001558319.1 1519203 D 357809 CDS YP_001558320.1 160879352 5743302 1519718..1520227 1 NC_010001.1 PFAM: Glycosyltransferase 28 domain; KEGG: cth:Cthe_1359 glycosyltransferase 28-like protein; glycosyltransferase family 28 protein 1520227 5743302 Cphy_1203 Clostridium phytofermentans ISDg glycosyltransferase family 28 protein YP_001558320.1 1519718 D 357809 CDS YP_001558321.1 160879353 5743303 1520250..1521479 1 NC_010001.1 PFAM: glycosyl transferase group 1; KEGG: cth:Cthe_1357 glycosyl transferase, group 1; glycosyl transferase group 1 1521479 5743303 Cphy_1204 Clostridium phytofermentans ISDg glycosyl transferase group 1 YP_001558321.1 1520250 D 357809 CDS YP_001558322.1 160879354 5743304 1521488..1522399 1 NC_010001.1 KEGG: cth:Cthe_1356 glycosyltransferase; glycosyltransferase 1522399 5743304 Cphy_1205 Clostridium phytofermentans ISDg glycosyltransferase YP_001558322.1 1521488 D 357809 CDS YP_001558323.1 160879355 5743305 1522421..1523494 1 NC_010001.1 PFAM: glycosyl transferase group 1; KEGG: cth:Cthe_1357 glycosyl transferase, group 1; group 1 glycosyl transferase 1523494 5743305 Cphy_1206 Clostridium phytofermentans ISDg group 1 glycosyl transferase YP_001558323.1 1522421 D 357809 CDS YP_001558324.1 160879356 5743306 1523507..1524619 1 NC_010001.1 KEGG: pdi:BDI_0432 hexapeptide transferase family protein; hexapeptide transferase family protein 1524619 5743306 Cphy_1207 Clostridium phytofermentans ISDg hexapeptide transferase family protein YP_001558324.1 1523507 D 357809 CDS YP_001558325.1 160879357 5743307 1524656..1525936 1 NC_010001.1 PFAM: O-antigen polymerase; KEGG: bca:BCE_5389 O-antigen polymerase (wzy); O-antigen polymerase 1525936 5743307 Cphy_1208 Clostridium phytofermentans ISDg O-antigen polymerase YP_001558325.1 1524656 D 357809 CDS YP_001558326.1 160879358 5743308 1525949..1527427 1 NC_010001.1 PFAM: polysaccharide biosynthesis protein; KEGG: gvi:gll3709 polysaccharide transporter, PST family; polysaccharide biosynthesis protein 1527427 5743308 Cphy_1209 Clostridium phytofermentans ISDg polysaccharide biosynthesis protein YP_001558326.1 1525949 D 357809 CDS YP_001558327.1 160879359 5743309 1527470..1528762 1 NC_010001.1 KEGG: drm:Dred_3027 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 1528762 5743309 Cphy_1210 Clostridium phytofermentans ISDg nucleotide sugar dehydrogenase YP_001558327.1 1527470 D 357809 CDS YP_001558328.1 160879360 5743310 1528897..1529910 1 NC_010001.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mla:Mlab_0897 hypothetical protein; NAD-dependent epimerase/dehydratase 1529910 5743310 Cphy_1211 Clostridium phytofermentans ISDg NAD-dependent epimerase/dehydratase YP_001558328.1 1528897 D 357809 CDS YP_001558329.1 160879361 5743311 1529939..1530664 1 NC_010001.1 PFAM: PHP domain protein; KEGG: ssa:SSA_2224 phosphotyrosine-protein phosphatase; protein-tyrosine-phosphatase 1530664 5743311 Cphy_1212 Clostridium phytofermentans ISDg protein-tyrosine-phosphatase YP_001558329.1 1529939 D 357809 CDS YP_001558330.1 160879362 5743312 1530685..1532133 1 NC_010001.1 KEGG: cth:Cthe_1363 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; exopolysaccharide tyrosine-protein kinase 1532133 5743312 Cphy_1213 Clostridium phytofermentans ISDg exopolysaccharide tyrosine-protein kinase YP_001558330.1 1530685 D 357809 CDS YP_001558331.1 160879363 5743313 complement(1532403..1532984) 1 NC_010001.1 KEGG: oih:OB0250 hypothetical protein; hypothetical protein 1532984 5743313 Cphy_1214 Clostridium phytofermentans ISDg hypothetical protein YP_001558331.1 1532403 R 357809 CDS YP_001558332.1 160879364 5743314 complement(1533079..1534347) 1 NC_010001.1 KEGG: amt:Amet_1520 hypothetical protein; hypothetical protein 1534347 5743314 Cphy_1215 Clostridium phytofermentans ISDg hypothetical protein YP_001558332.1 1533079 R 357809 CDS YP_001558333.1 160879365 5743315 complement(1534424..1534588) 1 NC_010001.1 KEGG: cbe:Cbei_2367 ribose 5-phosphate isomerase; ribose 5-phosphate isomerase 1534588 5743315 Cphy_1216 Clostridium phytofermentans ISDg ribose 5-phosphate isomerase YP_001558333.1 1534424 R 357809 CDS YP_001558334.1 160879366 5743316 1535116..1535502 1 NC_010001.1 KEGG: bxe:Bxe_A3319 hypothetical protein; hypothetical protein 1535502 5743316 Cphy_1217 Clostridium phytofermentans ISDg hypothetical protein YP_001558334.1 1535116 D 357809 CDS YP_001558335.1 160879367 5743317 1536445..1538409 1 NC_010001.1 PFAM: DNA mismatch repair protein MutS domain protein; SMART: MutS III domain protein; KEGG: cbe:Cbei_2115 DNA mismatch repair protein MutS domain protein; DNA mismatch repair protein MutS domain-containing protein 1538409 5743317 Cphy_1218 Clostridium phytofermentans ISDg DNA mismatch repair protein MutS domain-containing protein YP_001558335.1 1536445 D 357809 CDS YP_001558336.1 160879368 5743318 1538568..1539884 1 NC_010001.1 KEGG: amt:Amet_3796 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; xylose isomerase 1539884 5743318 Cphy_1219 Clostridium phytofermentans ISDg xylose isomerase YP_001558336.1 1538568 D 357809 CDS YP_001558337.1 160879369 5743319 1540388..1541281 1 NC_010001.1 KEGG: mac:MA4292 cell surface protein; hypothetical protein 1541281 5743319 Cphy_1220 Clostridium phytofermentans ISDg hypothetical protein YP_001558337.1 1540388 D 357809 CDS YP_001558338.1 160879370 5743320 1541304..1543175 1 NC_010001.1 KEGG: pfa:PFE0325w hypothetical protein; hypothetical protein 1543175 5743320 Cphy_1221 Clostridium phytofermentans ISDg hypothetical protein YP_001558338.1 1541304 D 357809 CDS YP_001558339.1 160879371 5743321 1543165..1544682 1 NC_010001.1 SMART: AAA ATPase; KEGG: sun:SUN_1058 hypothetical protein; ATPase AAA 1544682 5743321 Cphy_1222 Clostridium phytofermentans ISDg ATPase AAA YP_001558339.1 1543165 D 357809 CDS YP_001558340.1 160879372 5743322 complement(1545011..1546171) 1 NC_010001.1 PFAM: ABC-2 type transporter; KEGG: tde:TDE0696 membrane protein; ABC-2 type transporter 1546171 5743322 Cphy_1223 Clostridium phytofermentans ISDg ABC-2 type transporter YP_001558340.1 1545011 R 357809 CDS YP_001558341.1 160879373 5743323 complement(1546158..1547300) 1 NC_010001.1 PFAM: ABC-2 type transporter; KEGG: blo:BL0900 hypothetical protein; ABC-2 type transporter 1547300 5743323 Cphy_1224 Clostridium phytofermentans ISDg ABC-2 type transporter YP_001558341.1 1546158 R 357809 CDS YP_001558342.1 160879374 5743324 complement(1547312..1548244) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_1042 probable ATP binding protein of ABC transporter; ABC transporter 1548244 5743324 Cphy_1225 Clostridium phytofermentans ISDg ABC transporter YP_001558342.1 1547312 R 357809 CDS YP_001558343.1 160879375 5743325 1548842..1549732 1 NC_010001.1 TIGRFAM: methyltransferase; KEGG: oih:OB1239 hypothetical protein; methyltransferase 1549732 5743325 Cphy_1226 Clostridium phytofermentans ISDg methyltransferase YP_001558343.1 1548842 D 357809 CDS YP_001558344.1 160879376 5744832 1549735..1550889 1 NC_010001.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cbh:CLC_0782 cystathionine beta-lyase; cystathionine gamma-synthase 1550889 5744832 Cphy_1227 Clostridium phytofermentans ISDg cystathionine gamma-synthase YP_001558344.1 1549735 D 357809 CDS YP_001558345.1 160879377 5744833 1551030..1551938 1 NC_010001.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cth:Cthe_1560 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent protein beta subunit 1551938 5744833 Cphy_1228 Clostridium phytofermentans ISDg pyridoxal-5'-phosphate-dependent protein beta subunit YP_001558345.1 1551030 D 357809 CDS YP_001558346.1 160879378 5744834 1552260..1553165 1 NC_010001.1 PFAM: regulatory protein MarR; regulatory protein LysR; KEGG: swo:Swol_0935 LysR-type transcriptional regulator; MarR family transcriptional regulator 1553165 5744834 Cphy_1229 Clostridium phytofermentans ISDg MarR family transcriptional regulator YP_001558346.1 1552260 D 357809 CDS YP_001558347.1 160879379 5744835 1553670..1554713 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: efa:EF2082 ABC transporter, ATP-binding protein; ABC transporter 1554713 5744835 Cphy_1230 Clostridium phytofermentans ISDg ABC transporter YP_001558347.1 1553670 D 357809 CDS YP_001558348.1 160879380 5744836 1554697..1555377 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_3893 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1555377 5744836 Cphy_1231 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001558348.1 1554697 D 357809 CDS YP_001558349.1 160879381 5744837 1555390..1556349 1 NC_010001.1 TIGRFAM: L-lactate dehydrogenase; PFAM: UBA/THIF-type NAD/FAD binding protein; Lactate/malate dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase; KEGG: cbe:Cbei_2789 L-lactate dehydrogenase; L-lactate dehydrogenase 1556349 5744837 Cphy_1232 Clostridium phytofermentans ISDg L-lactate dehydrogenase YP_001558349.1 1555390 D 357809 CDS YP_001558350.1 160879382 5744838 1556433..1557260 1 NC_010001.1 PFAM: NLPA lipoprotein; KEGG: efa:EF2080 lipoprotein, YaeC family; NLPA lipoprotein 1557260 5744838 Cphy_1233 Clostridium phytofermentans ISDg NLPA lipoprotein YP_001558350.1 1556433 D 357809 CDS YP_001558351.1 160879383 5744839 1557321..1558700 1 NC_010001.1 PFAM: FAD linked oxidase domain protein; KEGG: cno:NT01CX_1612 glycolate oxidase, subunit GlcD; FAD linked oxidase domain-containing protein 1558700 5744839 Cphy_1234 Clostridium phytofermentans ISDg FAD linked oxidase domain-containing protein YP_001558351.1 1557321 D 357809 CDS YP_001558352.1 160879384 5744840 1558778..1559959 1 NC_010001.1 PFAM: aminotransferase class I and II; KEGG: cth:Cthe_2793 aminotransferase, class I and II; class I and II aminotransferase 1559959 5744840 Cphy_1235 Clostridium phytofermentans ISDg class I and II aminotransferase YP_001558352.1 1558778 D 357809 CDS YP_001558353.1 160879385 5744842 1560165..1560710 1 NC_010001.1 TIGRFAM: metal dependent phophohydrolase; KEGG: cbh:CLC_0680 HDIG domain protein; metal dependent phophohydrolase 1560710 5744842 Cphy_1236 Clostridium phytofermentans ISDg metal dependent phophohydrolase YP_001558353.1 1560165 D 357809 CDS YP_001558354.1 160879386 5744843 1561213..1562964 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_3147 ABC transporter related protein; ABC transporter 1562964 5744843 Cphy_1237 Clostridium phytofermentans ISDg ABC transporter YP_001558354.1 1561213 D 357809 CDS YP_001558355.1 160879387 5744844 1562954..1564849 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_3148 ABC transporter related protein; ABC transporter 1564849 5744844 Cphy_1238 Clostridium phytofermentans ISDg ABC transporter YP_001558355.1 1562954 D 357809 CDS YP_001558356.1 160879388 5744845 1565060..1566136 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: tde:TDE0148 histidine kinase-related ATPase; integral membrane sensor signal transduction histidine kinase 1566136 5744845 Cphy_1239 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001558356.1 1565060 D 357809 CDS YP_001558357.1 160879389 5744846 1566225..1566848 1 NC_010001.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: tde:TDE0149 DNA-binding response regulator; two component LuxR family transcriptional regulator 1566848 5744846 Cphy_1240 Clostridium phytofermentans ISDg two component LuxR family transcriptional regulator YP_001558357.1 1566225 D 357809 CDS YP_001558358.1 160879390 5744847 1566938..1567600 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ckl:CKL_3394 hypothetical protein; two component transcriptional regulator 1567600 5744847 Cphy_1241 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001558358.1 1566938 D 357809 CDS YP_001558359.1 160879391 5744848 1567627..1568622 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cdf:CD1960 two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1568622 5744848 Cphy_1242 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001558359.1 1567627 D 357809 CDS YP_001558360.1 160879392 5744849 1568748..1569437 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spj:MGAS2096_Spy1111 ABC transporter ATP-binding protein; ABC transporter 1569437 5744849 Cphy_1243 Clostridium phytofermentans ISDg ABC transporter YP_001558360.1 1568748 D 357809 CDS YP_001558361.1 160879393 5744850 1569430..1571748 1 NC_010001.1 PFAM: protein of unknown function DUF214; KEGG: cdf:CD2533 ABC transporter, permease; hypothetical protein 1571748 5744850 Cphy_1244 Clostridium phytofermentans ISDg hypothetical protein YP_001558361.1 1569430 D 357809 CDS YP_001558362.1 160879394 5744851 1571956..1573083 1 NC_010001.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: ctc:CTC00578 exonuclease sbcD; nuclease SbcCD subunit D 1573083 5744851 Cphy_1245 Clostridium phytofermentans ISDg nuclease SbcCD subunit D YP_001558362.1 1571956 D 357809 CDS YP_001558363.1 160879395 5744852 1573127..1576243 1 NC_010001.1 PFAM: SMC domain protein; KEGG: ctc:CTC00579 exonuclease sbcC; SMC domain-containing protein 1576243 5744852 Cphy_1246 Clostridium phytofermentans ISDg SMC domain-containing protein YP_001558363.1 1573127 D 357809 CDS YP_001558364.1 160879396 5744853 complement(1576393..1577199) 1 NC_010001.1 KEGG: cac:CAC2572 possible aminoglycoside phosphotransferase (protein kinase related), diverged; hypothetical protein 1577199 5744853 Cphy_1247 Clostridium phytofermentans ISDg hypothetical protein YP_001558364.1 1576393 R 357809 CDS YP_001558365.1 160879397 5744854 complement(1577527..1578117) 1 NC_010001.1 involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme; dipicolinate synthase subunit B 1578117 spoVFB 5744854 spoVFB Clostridium phytofermentans ISDg dipicolinate synthase subunit B YP_001558365.1 1577527 R 357809 CDS YP_001558366.1 160879398 5744855 complement(1578134..1579018) 1 NC_010001.1 catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance; dipicolinate synthase subunit A 1579018 5744855 Cphy_1249 Clostridium phytofermentans ISDg dipicolinate synthase subunit A YP_001558366.1 1578134 R 357809 CDS YP_001558367.1 160879399 5744856 1579431..1580060 1 NC_010001.1 PFAM: Phosphoglycerate mutase; KEGG: pth:PTH_1315 fructose-2,6-bisphosphatase; phosphoglycerate mutase 1580060 5744856 Cphy_1250 Clostridium phytofermentans ISDg phosphoglycerate mutase YP_001558367.1 1579431 D 357809 CDS YP_001558368.1 160879400 5744857 complement(1580100..1580870) 1 NC_010001.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; KEGG: cpf:CPF_0719 HAD hydrolase, IIB family; cof family hydrolase 1580870 5744857 Cphy_1251 Clostridium phytofermentans ISDg cof family hydrolase YP_001558368.1 1580100 R 357809 CDS YP_001558369.1 160879401 5744858 1581246..1582583 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: msi:Msm_0152 Na+-driven multidrug efflux pump (MATE family), NorM; MATE efflux family protein 1582583 5744858 Cphy_1252 Clostridium phytofermentans ISDg MATE efflux family protein YP_001558369.1 1581246 D 357809 CDS YP_001558370.1 160879402 5744859 1582741..1583919 1 NC_010001.1 PFAM: metallophosphoesterase; KEGG: bcl:ABC0966 nucleotidase; metallophosphoesterase 1583919 5744859 Cphy_1253 Clostridium phytofermentans ISDg metallophosphoesterase YP_001558370.1 1582741 D 357809 CDS YP_001558371.1 160879403 5744860 1584256..1585329 1 NC_010001.1 PFAM: lipolytic protein G-D-S-L family; KEGG: cth:Cthe_0797 glycoside hydrolase, family 5; GDSL family lipase 1585329 5744860 Cphy_1254 Clostridium phytofermentans ISDg GDSL family lipase YP_001558371.1 1584256 D 357809 CDS YP_001558372.1 160879404 5744861 complement(1585436..1585960) 1 NC_010001.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cno:NT01CX_0653 peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl isomerase 1585960 5744861 Cphy_1255 Clostridium phytofermentans ISDg peptidyl-prolyl isomerase YP_001558372.1 1585436 R 357809 CDS YP_001558373.1 160879405 5744862 1586394..1587647 1 NC_010001.1 PFAM: protein of unknown function DUF1063; KEGG: tde:TDE2144 hypothetical protein; hypothetical protein 1587647 5744862 Cphy_1256 Clostridium phytofermentans ISDg hypothetical protein YP_001558373.1 1586394 D 357809 CDS YP_001558374.1 160879406 5744863 1587695..1588855 1 NC_010001.1 PFAM: Extracellular ligand-binding receptor; KEGG: amt:Amet_4119 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1588855 5744863 Cphy_1257 Clostridium phytofermentans ISDg extracellular ligand-binding receptor YP_001558374.1 1587695 D 357809 CDS YP_001558375.1 160879407 5744864 1588942..1589817 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: amt:Amet_4118 inner-membrane translocator; inner-membrane translocator 1589817 5744864 Cphy_1258 Clostridium phytofermentans ISDg inner-membrane translocator YP_001558375.1 1588942 D 357809 CDS YP_001558376.1 160879408 5744865 1589822..1590895 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: amt:Amet_4117 inner-membrane translocator; inner-membrane translocator 1590895 5744865 Cphy_1259 Clostridium phytofermentans ISDg inner-membrane translocator YP_001558376.1 1589822 D 357809 CDS YP_001558377.1 160879409 5744866 1590919..1591689 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4116 ABC transporter related; ABC transporter 1591689 5744866 Cphy_1260 Clostridium phytofermentans ISDg ABC transporter YP_001558377.1 1590919 D 357809 CDS YP_001558378.1 160879410 5744867 1591682..1592389 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4115 ABC transporter related; ABC transporter 1592389 5744867 Cphy_1261 Clostridium phytofermentans ISDg ABC transporter YP_001558378.1 1591682 D 357809 CDS YP_001558379.1 160879411 5744868 1592405..1593403 1 NC_010001.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 1593403 5744868 Cphy_1262 Clostridium phytofermentans ISDg dihydroxyacetone kinase subunit DhaK YP_001558379.1 1592405 D 357809 CDS YP_001558380.1 160879412 5744869 1593416..1594063 1 NC_010001.1 TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: amt:Amet_4113 dihydroxyacetone kinase, L subunit; dihydroxyacetone kinase subunit DhaL 1594063 5744869 Cphy_1263 Clostridium phytofermentans ISDg dihydroxyacetone kinase subunit DhaL YP_001558380.1 1593416 D 357809 CDS YP_001558381.1 160879413 5744870 1594143..1594628 1 NC_010001.1 KEGG: amt:Amet_4120 hypothetical protein; hypothetical protein 1594628 5744870 Cphy_1264 Clostridium phytofermentans ISDg hypothetical protein YP_001558381.1 1594143 D 357809 CDS YP_001558382.1 160879414 5744871 1594834..1596525 1 NC_010001.1 PFAM: helix-turn-helix Fis-type; Resolvase helix-turn-helix domain protein; KEGG: amt:Amet_4111 sigma54 specific transcriptional regulator, Fis family; Fis family transcriptional regulator 1596525 5744871 Cphy_1265 Clostridium phytofermentans ISDg Fis family transcriptional regulator YP_001558382.1 1594834 D 357809 CDS YP_001558383.1 160879415 5744872 1596867..1597529 1 NC_010001.1 hypothetical protein 1597529 5744872 Cphy_1266 Clostridium phytofermentans ISDg hypothetical protein YP_001558383.1 1596867 D 357809 CDS YP_001558384.1 160879416 5744873 1597743..1598132 1 NC_010001.1 hypothetical protein 1598132 5744873 Cphy_1267 Clostridium phytofermentans ISDg hypothetical protein YP_001558384.1 1597743 D 357809 CDS YP_001558385.1 160879417 5744874 complement(1598302..1598955) 1 NC_010001.1 hypothetical protein 1598955 5744874 Cphy_1268 Clostridium phytofermentans ISDg hypothetical protein YP_001558385.1 1598302 R 357809 CDS YP_001558386.1 160879418 5744875 1599234..1600040 1 NC_010001.1 hypothetical protein 1600040 5744875 Cphy_1269 Clostridium phytofermentans ISDg hypothetical protein YP_001558386.1 1599234 D 357809 CDS YP_001558387.1 160879419 5744876 1600203..1600520 1 NC_010001.1 PFAM: transcriptional regulator PadR family protein; KEGG: tde:TDE1858 transcriptional regulator, PadR family; PadR-like family transcriptional regulator 1600520 5744876 Cphy_1270 Clostridium phytofermentans ISDg PadR-like family transcriptional regulator YP_001558387.1 1600203 D 357809 CDS YP_001558388.1 160879420 5744877 1600521..1601426 1 NC_010001.1 KEGG: tde:TDE1860 hypothetical protein; hypothetical protein 1601426 5744877 Cphy_1271 Clostridium phytofermentans ISDg hypothetical protein YP_001558388.1 1600521 D 357809 CDS YP_001558389.1 160879421 5744878 1601423..1602289 1 NC_010001.1 KEGG: tde:TDE1862 hypothetical protein; hypothetical protein 1602289 5744878 Cphy_1272 Clostridium phytofermentans ISDg hypothetical protein YP_001558389.1 1601423 D 357809 CDS YP_001558390.1 160879422 5744879 1602328..1602504 1 NC_010001.1 PFAM: PspC domain protein; KEGG: cac:CAC2659 stress-responsive transcriptional regulator PspC; phage shock protein C, PspC 1602504 5744879 Cphy_1273 Clostridium phytofermentans ISDg phage shock protein C, PspC YP_001558390.1 1602328 D 357809 CDS YP_001558391.1 160879423 5744880 1602923..1604707 1 NC_010001.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1604707 argS 5744880 argS Clostridium phytofermentans ISDg arginyl-tRNA synthetase YP_001558391.1 1602923 D 357809 CDS YP_001558392.1 160879424 5744881 1604941..1606257 1 NC_010001.1 PFAM: protein of unknown function DUF815; SMART: AAA ATPase; KEGG: mst:Msp_1313 predicted ATPase; hypothetical protein 1606257 5744881 Cphy_1275 Clostridium phytofermentans ISDg hypothetical protein YP_001558392.1 1604941 D 357809 CDS YP_001558393.1 160879425 5744882 1606560..1607687 1 NC_010001.1 KEGG: pna:Pnap_3735 hypothetical protein; hypothetical protein 1607687 5744882 Cphy_1276 Clostridium phytofermentans ISDg hypothetical protein YP_001558393.1 1606560 D 357809 CDS YP_001558394.1 160879426 5744883 complement(1607799..1608065) 1 NC_010001.1 KEGG: cbe:Cbei_2068 glutaredoxin-like protein; glutaredoxin-like protein 1608065 5744883 Cphy_1277 Clostridium phytofermentans ISDg glutaredoxin-like protein YP_001558394.1 1607799 R 357809 CDS YP_001558395.1 160879427 5744884 1608257..1608940 1 NC_010001.1 KEGG: pth:PTH_2361 predicted secreted protein; hypothetical protein 1608940 5744884 Cphy_1278 Clostridium phytofermentans ISDg hypothetical protein YP_001558395.1 1608257 D 357809 CDS YP_001558396.1 160879428 5744885 1609133..1609510 1 NC_010001.1 PFAM: regulatory protein GntR HTH; KEGG: drm:Dred_1515 regulatory protein GntR, HTH; GntR family transcriptional regulator 1609510 5744885 Cphy_1279 Clostridium phytofermentans ISDg GntR family transcriptional regulator YP_001558396.1 1609133 D 357809 CDS YP_001558397.1 160879429 5744886 1609598..1610284 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbf:CLI_0638 ABC transporter, ATP-binding protein; ABC transporter 1610284 5744886 Cphy_1280 Clostridium phytofermentans ISDg ABC transporter YP_001558397.1 1609598 D 357809 CDS YP_001558398.1 160879430 5744887 1610306..1611049 1 NC_010001.1 KEGG: cno:NT01CX_0786 hypothetical protein; hypothetical protein 1611049 5744887 Cphy_1281 Clostridium phytofermentans ISDg hypothetical protein YP_001558398.1 1610306 D 357809 CDS YP_001558399.1 160879431 5744888 complement(1611056..1611481) 1 NC_010001.1 hypothetical protein 1611481 5744888 Cphy_1282 Clostridium phytofermentans ISDg hypothetical protein YP_001558399.1 1611056 R 357809 CDS YP_001558400.1 160879432 5744889 1611686..1612924 1 NC_010001.1 PFAM: conserved hypothetical protein; KEGG: dsy:DSY4682 hypothetical protein; hypothetical protein 1612924 5744889 Cphy_1283 Clostridium phytofermentans ISDg hypothetical protein YP_001558400.1 1611686 D 357809 CDS YP_001558401.1 160879433 5744890 1613051..1613686 1 NC_010001.1 KEGG: gtn:GTNG_1989 hypothetical protein; hypothetical protein 1613686 5744890 Cphy_1284 Clostridium phytofermentans ISDg hypothetical protein YP_001558401.1 1613051 D 357809 CDS YP_001558402.1 160879434 5744891 1613797..1614369 1 NC_010001.1 hypothetical protein 1614369 5744891 Cphy_1285 Clostridium phytofermentans ISDg hypothetical protein YP_001558402.1 1613797 D 357809 CDS YP_001558403.1 160879435 5744892 1614415..1615575 1 NC_010001.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 1615575 5744892 Cphy_1286 Clostridium phytofermentans ISDg trans-2-enoyl-CoA reductase YP_001558403.1 1614415 D 357809 CDS YP_001558404.1 160879436 5744893 1615659..1616342 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bca:BCE_2749 transcription response regulator-like protein; two component transcriptional regulator 1616342 5744893 Cphy_1287 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001558404.1 1615659 D 357809 CDS YP_001558405.1 160879437 5744894 1616339..1617916 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: efa:EF2298 sensor histidine kinase VanSB; integral membrane sensor signal transduction histidine kinase 1617916 5744894 Cphy_1288 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001558405.1 1616339 D 357809 CDS YP_001558406.1 160879438 5744895 1618232..1619131 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lme:LEUM_0415 ABC-type multidrug transport system, ATPase component; ABC transporter 1619131 5744895 Cphy_1289 Clostridium phytofermentans ISDg ABC transporter YP_001558406.1 1618232 D 357809 CDS YP_001558407.1 160879439 5744896 1619112..1619900 1 NC_010001.1 PFAM: ABC-2 type transporter; KEGG: lme:LEUM_0416 hypothetical protein; ABC-2 type transporter 1619900 5744896 Cphy_1290 Clostridium phytofermentans ISDg ABC-2 type transporter YP_001558407.1 1619112 D 357809 CDS YP_001558408.1 160879440 5744897 1620273..1620806 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bpu:BPUM_0138 ribosomal protein acetyltransferase; N-acetyltransferase GCN5 1620806 5744897 Cphy_1291 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001558408.1 1620273 D 357809 CDS YP_001558409.1 160879441 5744898 1620790..1621257 1 NC_010001.1 KEGG: bsu:BG12539 hypothetical protein; hypothetical protein 1621257 5744898 Cphy_1292 Clostridium phytofermentans ISDg hypothetical protein YP_001558409.1 1620790 D 357809 CDS YP_001558410.1 160879442 5744899 complement(1621422..1622306) 1 NC_010001.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cbe:Cbei_0517 transcriptional regulator, LysR family; LysR family transcriptional regulator 1622306 5744899 Cphy_1293 Clostridium phytofermentans ISDg LysR family transcriptional regulator YP_001558410.1 1621422 R 357809 CDS YP_001558411.1 160879443 5744900 1622469..1622972 1 NC_010001.1 PFAM: nitroreductase; KEGG: cac:CAC1551 nitroreductase family protein; nitroreductase 1622972 5744900 Cphy_1294 Clostridium phytofermentans ISDg nitroreductase YP_001558411.1 1622469 D 357809 CDS YP_001558412.1 160879444 5744901 1623053..1623280 1 NC_010001.1 hypothetical protein 1623280 5744901 Cphy_1295 Clostridium phytofermentans ISDg hypothetical protein YP_001558412.1 1623053 D 357809 CDS YP_001558413.1 160879445 5744902 complement(1623300..1623773) 1 NC_010001.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: dsy:DSY1235 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 1623773 5744902 Cphy_1296 Clostridium phytofermentans ISDg pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001558413.1 1623300 R 357809 CDS YP_001558414.1 160879446 5744903 1623912..1625354 1 NC_010001.1 PFAM: regulatory protein GntR HTH; KEGG: dsy:DSY1236 hypothetical protein; GntR family transcriptional regulator 1625354 5744903 Cphy_1297 Clostridium phytofermentans ISDg GntR family transcriptional regulator YP_001558414.1 1623912 D 357809 CDS YP_001558415.1 160879447 5744905 complement(1625565..1626725) 1 NC_010001.1 KEGG: bce:BC3450 hypothetical membrane spanning protein; hypothetical protein 1626725 5744905 Cphy_1299 Clostridium phytofermentans ISDg hypothetical protein YP_001558415.1 1625565 R 357809 CDS YP_001558416.1 160879448 5744906 1626827..1627501 1 NC_010001.1 PFAM: cyclic nucleotide-binding; KEGG: cbh:CLC_1580 cyclic nucleotide-binding domain protein; cyclic nucleotide-binding protein 1627501 5744906 Cphy_1300 Clostridium phytofermentans ISDg cyclic nucleotide-binding protein YP_001558416.1 1626827 D 357809 CDS YP_001558417.1 160879449 5744907 complement(1627659..1628696) 1 NC_010001.1 PFAM: Pectinesterase; KEGG: cac:CAC3373 pectin methylesterase; pectinesterase 1628696 5744907 Cphy_1301 Clostridium phytofermentans ISDg pectinesterase YP_001558417.1 1627659 R 357809 CDS YP_001558418.1 160879450 5744908 1629279..1630811 1 NC_010001.1 PFAM: RNA methylase; KEGG: rca:Rcas_2582 RNA methylase; RNA methylase 1630811 5744908 Cphy_1302 Clostridium phytofermentans ISDg RNA methylase YP_001558418.1 1629279 D 357809 CDS YP_001558419.1 160879451 5744909 1630880..1631782 1 NC_010001.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 1631782 5744909 Cphy_1303 Clostridium phytofermentans ISDg endonuclease IV YP_001558419.1 1630880 D 357809 CDS YP_001558420.1 160879452 5744910 1631948..1632982 1 NC_010001.1 KEGG: pla:Plav_0415 hypothetical protein; hypothetical protein 1632982 5744910 Cphy_1304 Clostridium phytofermentans ISDg hypothetical protein YP_001558420.1 1631948 D 357809 CDS YP_001558421.1 160879453 5744911 1633167..1633946 1 NC_010001.1 KEGG: ssv:SSU98_0050 hypothetical protein; hypothetical protein 1633946 5744911 Cphy_1305 Clostridium phytofermentans ISDg hypothetical protein YP_001558421.1 1633167 D 357809 CDS YP_001558422.1 160879454 5744912 1633960..1634880 1 NC_010001.1 KEGG: cbf:CLI_0627 hypothetical protein; hypothetical protein 1634880 5744912 Cphy_1306 Clostridium phytofermentans ISDg hypothetical protein YP_001558422.1 1633960 D 357809 CDS YP_001558423.1 160879455 5744913 1634993..1635727 1 NC_010001.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: cth:Cthe_3110 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD binding protein 1635727 5744913 Cphy_1307 Clostridium phytofermentans ISDg UBA/THIF-type NAD/FAD binding protein YP_001558423.1 1634993 D 357809 CDS YP_001558424.1 160879456 5744914 1636790..1640047 1 NC_010001.1 PFAM: APHP domain protein; KEGG: fjo:Fjoh_3203 Ig domain protein, group 2 domain protein; APHP domain-containing protein 1640047 5744914 Cphy_1308 Clostridium phytofermentans ISDg APHP domain-containing protein YP_001558424.1 1636790 D 357809 CDS YP_001558425.1 160879457 5744915 1640550..1641230 1 NC_010001.1 PFAM: Vitamin B12 dependent methionine synthase activation region; KEGG: amt:Amet_3374 vitamin B12 dependent methionine synthase, activation region; vitamin B12 dependent methionine synthase activation region 1641230 5744915 Cphy_1309 Clostridium phytofermentans ISDg vitamin B12 dependent methionine synthase activation region YP_001558425.1 1640550 D 357809 CDS YP_001558426.1 160879458 5744916 complement(1641409..1642101) 1 NC_010001.1 PFAM: YhhN family protein; KEGG: tme:Tmel_1642 YhhN family protein; hypothetical protein 1642101 5744916 Cphy_1310 Clostridium phytofermentans ISDg hypothetical protein YP_001558426.1 1641409 R 357809 CDS YP_001558427.1 160879459 5744917 complement(1642247..1642690) 1 NC_010001.1 PFAM: protein of unknown function DUF523; KEGG: cac:CAC2339 uncharacterized protein, YBBK B.subtilis ortholog; hypothetical protein 1642690 5744917 Cphy_1311 Clostridium phytofermentans ISDg hypothetical protein YP_001558427.1 1642247 R 357809 CDS YP_001558428.1 160879460 5744918 1643002..1643706 1 NC_010001.1 PFAM: protein of unknown function DUF45; KEGG: cpf:CPF_0800 hypothetical protein; hypothetical protein 1643706 5744918 Cphy_1312 Clostridium phytofermentans ISDg hypothetical protein YP_001558428.1 1643002 D 357809 CDS YP_001558429.1 160879461 5744919 1643820..1644518 1 NC_010001.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cbe:Cbei_0309 GntR domain protein; regulatory protein GntR HTH 1644518 5744919 Cphy_1313 Clostridium phytofermentans ISDg regulatory protein GntR HTH YP_001558429.1 1643820 D 357809 CDS YP_001558430.1 160879462 5744920 complement(1644959..1646134) 1 NC_010001.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1646134 5744920 Cphy_1314 Clostridium phytofermentans ISDg transposase IS204/IS1001/IS1096/IS1165 family protein YP_001558430.1 1644959 R 357809 CDS YP_001558431.1 160879463 5744921 1646353..1647141 1 NC_010001.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: cbe:Cbei_0310 electron transfer flavoprotein, alpha/beta-subunit-like protein; electron transfer flavoprotein alpha/beta-subunit 1647141 5744921 Cphy_1315 Clostridium phytofermentans ISDg electron transfer flavoprotein alpha/beta-subunit YP_001558431.1 1646353 D 357809 CDS YP_001558432.1 160879464 5744922 1647155..1648360 1 NC_010001.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: cbe:Cbei_0311 electron transfer flavoprotein, alpha subunit-like protein; electron transfer flavoprotein alpha subunit 1648360 5744922 Cphy_1316 Clostridium phytofermentans ISDg electron transfer flavoprotein alpha subunit YP_001558432.1 1647155 D 357809 CDS YP_001558433.1 160879465 5744923 1648378..1649763 1 NC_010001.1 PFAM: FAD linked oxidase domain protein; KEGG: cbe:Cbei_0312 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 1649763 5744923 Cphy_1317 Clostridium phytofermentans ISDg FAD linked oxidase domain-containing protein YP_001558433.1 1648378 D 357809 CDS YP_001558434.1 160879466 5743705 complement(1649861..1651192) 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_2056 MATE efflux family protein; MATE efflux family protein 1651192 5743705 Cphy_1318 Clostridium phytofermentans ISDg MATE efflux family protein YP_001558434.1 1649861 R 357809 CDS YP_001558435.1 160879467 5743706 complement(1651275..1651745) 1 NC_010001.1 hypothetical protein 1651745 5743706 Cphy_1319 Clostridium phytofermentans ISDg hypothetical protein YP_001558435.1 1651275 R 357809 CDS YP_001558436.1 160879468 5743707 1652242..1652442 1 NC_010001.1 PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cbf:CLI_2367 small, acid-soluble spore protein; small acid-soluble spore protein alpha/beta type 1652442 5743707 Cphy_1320 Clostridium phytofermentans ISDg small acid-soluble spore protein alpha/beta type YP_001558436.1 1652242 D 357809 CDS YP_001558437.1 160879469 5743708 1652972..1653529 1 NC_010001.1 TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein; KEGG: cdf:CD2559 hypothetical protein; methyltransferase 1653529 5743708 Cphy_1321 Clostridium phytofermentans ISDg methyltransferase YP_001558437.1 1652972 D 357809 CDS YP_001558438.1 160879470 5743709 1653563..1654054 1 NC_010001.1 KEGG: tte:TTE1486 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 1654054 5743709 Cphy_1322 Clostridium phytofermentans ISDg pantetheine-phosphate adenylyltransferase YP_001558438.1 1653563 D 357809 CDS YP_001558439.1 160879471 5743710 1654056..1654724 1 NC_010001.1 KEGG: tte:TTE1485 archaeal/vacuolar-type H+-ATPase subunit H; hypothetical protein 1654724 5743710 Cphy_1323 Clostridium phytofermentans ISDg hypothetical protein YP_001558439.1 1654056 D 357809 CDS YP_001558440.1 160879472 5743711 complement(1654847..1655935) 1 NC_010001.1 PFAM: nucleoside recognition domain protein; KEGG: tte:TTE1484 hypothetical protein; nucleoside recognition domain-containing protein 1655935 5743711 Cphy_1324 Clostridium phytofermentans ISDg nucleoside recognition domain-containing protein YP_001558440.1 1654847 R 357809 CDS YP_001558441.1 160879473 5743712 complement(1655986..1657239) 1 NC_010001.1 PFAM: protein of unknown function DUF795; KEGG: amt:Amet_2764 protein of unknown function DUF795; hypothetical protein 1657239 5743712 Cphy_1325 Clostridium phytofermentans ISDg hypothetical protein YP_001558441.1 1655986 R 357809 CDS YP_001558442.1 160879474 5743713 1657582..1658577 1 NC_010001.1 KEGG: cth:Cthe_1029 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; phosphate acetyltransferase 1658577 5743713 Cphy_1326 Clostridium phytofermentans ISDg phosphate acetyltransferase YP_001558442.1 1657582 D 357809 CDS YP_001558443.1 160879475 5743714 1658810..1659997 1 NC_010001.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1659997 5743714 Cphy_1327 Clostridium phytofermentans ISDg acetate kinase YP_001558443.1 1658810 D 357809 CDS YP_001558444.1 160879476 5743715 1660204..1660731 1 NC_010001.1 PFAM: protein of unknown function DUF177; KEGG: cac:CAC1744 predicted Zn-finger-like protein, possible nucleic acid binding; hypothetical protein 1660731 5743715 Cphy_1328 Clostridium phytofermentans ISDg hypothetical protein YP_001558444.1 1660204 D 357809 CDS YP_001558445.1 160879477 5743716 1660735..1660920 1 NC_010001.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: chy:CHY_1453 ribosomal protein L32; 50S ribosomal protein L32 1660920 5743716 Cphy_1329 Clostridium phytofermentans ISDg 50S ribosomal protein L32 YP_001558445.1 1660735 D 357809 CDS YP_001558446.1 160879478 5743717 complement(1661074..1662252) 1 NC_010001.1 KEGG: cac:CAC0978 possible elongation subunit of DNA-dependent DNA polymerase; exonuclease-like protein 1662252 5743717 Cphy_1330 Clostridium phytofermentans ISDg exonuclease-like protein YP_001558446.1 1661074 R 357809 CDS YP_001558447.1 160879479 5743718 1662522..1664081 1 NC_010001.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: dsy:DSY4076 hypothetical protein; phospholipase D/transphosphatidylase 1664081 5743718 Cphy_1331 Clostridium phytofermentans ISDg phospholipase D/transphosphatidylase YP_001558447.1 1662522 D 357809 CDS YP_001558448.1 160879480 5743719 1664100..1664351 1 NC_010001.1 KEGG: cth:Cthe_2247 regulatory protein, MerR; regulatory protein MerR 1664351 5743719 Cphy_1332 Clostridium phytofermentans ISDg regulatory protein MerR YP_001558448.1 1664100 D 357809 CDS YP_001558449.1 160879481 5743720 1664452..1665063 1 NC_010001.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1665063 ruvA 5743720 ruvA Clostridium phytofermentans ISDg Holliday junction DNA helicase RuvA YP_001558449.1 1664452 D 357809 CDS YP_001558450.1 160879482 5743721 1665084..1666094 1 NC_010001.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1666094 ruvB 5743721 ruvB Clostridium phytofermentans ISDg Holliday junction DNA helicase RuvB YP_001558450.1 1665084 D 357809 CDS YP_001558451.1 160879483 5743722 1666260..1666673 1 NC_010001.1 PFAM: protein of unknown function DUF710; KEGG: cth:Cthe_2088 protein of unknown function DUF710; hypothetical protein 1666673 5743722 Cphy_1335 Clostridium phytofermentans ISDg hypothetical protein YP_001558451.1 1666260 D 357809 CDS YP_001558452.1 160879484 5743723 1667018..1669471 1 NC_010001.1 PFAM: peptidase U32; KEGG: ctc:CTC02275 protease; peptidase U32 1669471 5743723 Cphy_1336 Clostridium phytofermentans ISDg peptidase U32 YP_001558452.1 1667018 D 357809 CDS YP_001558453.1 160879485 5743724 1669623..1672541 1 NC_010001.1 PFAM: cell cycle protein; penicillin-binding protein transpeptidase; KEGG: ckl:CKL_3568 predicted peptidoglycan synthetase; penicillin-binding protein transpeptidase 1672541 5743724 Cphy_1337 Clostridium phytofermentans ISDg penicillin-binding protein transpeptidase YP_001558453.1 1669623 D 357809 CDS YP_001558454.1 160879486 5743725 1672882..1673334 1 NC_010001.1 PFAM: NUDIX hydrolase; KEGG: cdf:CD3398 DNA repair protein (nucleotide pyrophosphatase); NUDIX hydrolase 1673334 5743725 Cphy_1338 Clostridium phytofermentans ISDg NUDIX hydrolase YP_001558454.1 1672882 D 357809 CDS YP_001558455.1 160879487 5743726 1673474..1674133 1 NC_010001.1 hypothetical protein 1674133 5743726 Cphy_1339 Clostridium phytofermentans ISDg hypothetical protein YP_001558455.1 1673474 D 357809 CDS YP_001558456.1 160879488 5743727 1674206..1674457 1 NC_010001.1 KEGG: cbf:CLI_0911 hypothetical protein; hypothetical protein 1674457 5743727 Cphy_1340 Clostridium phytofermentans ISDg hypothetical protein YP_001558456.1 1674206 D 357809 CDS YP_001558457.1 160879489 5743728 complement(1674560..1674841) 1 NC_010001.1 KEGG: cth:Cthe_0851 hypothetical protein; hypothetical protein 1674841 5743728 Cphy_1341 Clostridium phytofermentans ISDg hypothetical protein YP_001558457.1 1674560 R 357809 CDS YP_001558458.1 160879490 5743729 1675200..1675709 1 NC_010001.1 PFAM: GtrA family protein; KEGG: ldb:Ldb1931 teichoic acid glycosylation protein; GtrA family protein 1675709 5743729 Cphy_1342 Clostridium phytofermentans ISDg GtrA family protein YP_001558458.1 1675200 D 357809 CDS YP_001558459.1 160879491 5743730 1675739..1676941 1 NC_010001.1 PFAM: RNA methylase; protein of unknown function Met10; KEGG: cpr:CPR_2555 methyltransferase; RNA methylase 1676941 5743730 Cphy_1343 Clostridium phytofermentans ISDg RNA methylase YP_001558459.1 1675739 D 357809 CDS YP_001558460.1 160879492 5743731 complement(1677124..1678152) 1 NC_010001.1 KEGG: cth:Cthe_0634 serine/threonine protein kinase; hypothetical protein 1678152 5743731 Cphy_1344 Clostridium phytofermentans ISDg hypothetical protein YP_001558460.1 1677124 R 357809 CDS YP_001558461.1 160879493 5743732 1678757..1679896 1 NC_010001.1 PFAM: prephenate dehydratase; Chorismate mutase; KEGG: ckl:CKL_0789 PheA; prephenate dehydratase 1679896 5743732 Cphy_1345 Clostridium phytofermentans ISDg prephenate dehydratase YP_001558461.1 1678757 D 357809 CDS YP_001558462.1 160879494 5743733 1680034..1681560 1 NC_010001.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: bld:BLi01390 serine protease Do (heat-shock protein); RBL00645; peptidase S1 and S6 chymotrypsin/Hap 1681560 5743733 Cphy_1346 Clostridium phytofermentans ISDg peptidase S1 and S6 chymotrypsin/Hap YP_001558462.1 1680034 D 357809 CDS YP_001558463.1 160879495 5743734 1681633..1682625 1 NC_010001.1 PFAM: NMT1/THI5 like domain protein; KEGG: cth:Cthe_2575 hypothetical protein; NMT1/THI5-like domain-containing protein 1682625 5743734 Cphy_1347 Clostridium phytofermentans ISDg NMT1/THI5-like domain-containing protein YP_001558463.1 1681633 D 357809 CDS YP_001558464.1 160879496 5743736 1683258..1683596 1 NC_010001.1 PFAM: protein of unknown function DUF970; KEGG: cpr:CPR_2445 hypothetical protein; hypothetical protein 1683596 5743736 Cphy_1349 Clostridium phytofermentans ISDg hypothetical protein YP_001558464.1 1683258 D 357809 CDS YP_001558465.1 160879497 5743737 complement(1683866..1684975) 1 NC_010001.1 PFAM: acyltransferase 3; KEGG: ckl:CKL_3622 hypothetical protein; acyltransferase 1684975 5743737 Cphy_1350 Clostridium phytofermentans ISDg acyltransferase YP_001558465.1 1683866 R 357809 CDS YP_001558466.1 160879498 5743738 complement(1685464..1685871) 1 NC_010001.1 hypothetical protein 1685871 5743738 Cphy_1351 Clostridium phytofermentans ISDg hypothetical protein YP_001558466.1 1685464 R 357809 CDS YP_001558467.1 160879499 5743739 complement(1686019..1688442) 1 NC_010001.1 PFAM: UvrD/REP helicase; KEGG: cth:Cthe_2876 ATP-dependent DNA helicase PcrA; UvrD/REP helicase 1688442 5743739 Cphy_1352 Clostridium phytofermentans ISDg UvrD/REP helicase YP_001558467.1 1686019 R 357809 CDS YP_001558468.1 160879500 5743740 1688857..1689495 1 NC_010001.1 PFAM: Domain of unknown function DUF1836; KEGG: cbf:CLI_1672 hypothetical protein; hypothetical protein 1689495 5743740 Cphy_1353 Clostridium phytofermentans ISDg hypothetical protein YP_001558468.1 1688857 D 357809 CDS YP_001558469.1 160879501 5743741 complement(1689650..1689967) 1 NC_010001.1 TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor; KEGG: tte:TTE0603 hypothetical protein; TrpR-like protein YerC/YecD 1689967 5743741 Cphy_1354 Clostridium phytofermentans ISDg TrpR-like protein YerC/YecD YP_001558469.1 1689650 R 357809 CDS YP_001558470.1 160879502 5743742 1690386..1691777 1 NC_010001.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: methyltransferase small; (Uracil-5)-methyltransferase; KEGG: amt:Amet_3671 RNA methyltransferase, TrmA family; RNA methyltransferase 1691777 5743742 Cphy_1355 Clostridium phytofermentans ISDg RNA methyltransferase YP_001558470.1 1690386 D 357809 CDS YP_001558471.1 160879503 5743743 1692134..1694635 1 NC_010001.1 PFAM: beta-lactamase domain protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mbu:Mbur_2318 tetratricopeptide protein; beta-lactamase domain-containing protein 1694635 5743743 Cphy_1356 Clostridium phytofermentans ISDg beta-lactamase domain-containing protein YP_001558471.1 1692134 D 357809 CDS YP_001558472.1 160879504 5743745 1695458..1695589 1 NC_010001.1 KEGG: sma:SAV1809 dipeptidase; hypothetical protein 1695589 5743745 Cphy_1358 Clostridium phytofermentans ISDg hypothetical protein YP_001558472.1 1695458 D 357809 CDS YP_001558473.1 160879505 5743746 1696110..1696454 1 NC_010001.1 PFAM: regulatory protein ArsR; KEGG: dsy:DSY1048 hypothetical protein; ArsR family transcriptional regulator 1696454 5743746 Cphy_1359 Clostridium phytofermentans ISDg ArsR family transcriptional regulator YP_001558473.1 1696110 D 357809 CDS YP_001558474.1 160879506 5743747 1696515..1697222 1 NC_010001.1 KEGG: dsy:DSY1049 hypothetical protein; hypothetical protein 1697222 5743747 Cphy_1360 Clostridium phytofermentans ISDg hypothetical protein YP_001558474.1 1696515 D 357809 CDS YP_001558475.1 160879507 5743748 1697552..1698742 1 NC_010001.1 KEGG: dsy:DSY3684 hypothetical protein; hypothetical protein 1698742 5743748 Cphy_1361 Clostridium phytofermentans ISDg hypothetical protein YP_001558475.1 1697552 D 357809 CDS YP_001558476.1 160879508 5743749 complement(1699084..1702356) 1 NC_010001.1 PFAM: protein of unknown function DUF214; KEGG: lmf:LMOf2365_1233 ABC transporter, permease; hypothetical protein 1702356 5743749 Cphy_1362 Clostridium phytofermentans ISDg hypothetical protein YP_001558476.1 1699084 R 357809 CDS YP_001558477.1 160879509 5743750 complement(1702350..1703054) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC0822 ABC transporter, ATP-binding protein; ABC transporter 1703054 5743750 Cphy_1363 Clostridium phytofermentans ISDg ABC transporter YP_001558477.1 1702350 R 357809 CDS YP_001558478.1 160879510 5743751 1703262..1703882 1 NC_010001.1 PFAM: regulatory protein TetR; KEGG: cbe:Cbei_3107 transcriptional regulator, TetR family; TetR family transcriptional regulator 1703882 5743751 Cphy_1364 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001558478.1 1703262 D 357809 CDS YP_001558479.1 160879511 5742315 1704206..1704727 1 NC_010001.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: cbh:CLC_0313 RibD domain protein; deaminase-reductase domain-containing protein 1704727 5742315 Cphy_1365 Clostridium phytofermentans ISDg deaminase-reductase domain-containing protein YP_001558479.1 1704206 D 357809 CDS YP_001558480.1 160879512 5742316 complement(1704795..1706663) 1 NC_010001.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mst:Msp_0678 predicted cation transport ATPase; heavy metal translocating P-type ATPase 1706663 5742316 Cphy_1366 Clostridium phytofermentans ISDg heavy metal translocating P-type ATPase YP_001558480.1 1704795 R 357809 CDS YP_001558481.1 160879513 5742317 1706829..1707374 1 NC_010001.1 PFAM: regulatory protein TetR; KEGG: sgo:SGO_0088 transcription regulator, AcrR family; TetR family transcriptional regulator 1707374 5742317 Cphy_1367 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001558481.1 1706829 D 357809 CDS YP_001558482.1 160879514 5742318 1708044..1709255 1 NC_010001.1 KEGG: cth:Cthe_2525 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; glutamyl-tRNA reductase 1709255 5742318 Cphy_1368 Clostridium phytofermentans ISDg glutamyl-tRNA reductase YP_001558482.1 1708044 D 357809 CDS YP_001558483.1 160879515 5742319 1709268..1709735 1 NC_010001.1 TIGRFAM: siroheme synthase; KEGG: cth:Cthe_2526 precorrin-2 oxidase / ferrochelatase; siroheme synthase 1709735 5742319 Cphy_1369 Clostridium phytofermentans ISDg siroheme synthase YP_001558483.1 1709268 D 357809 CDS YP_001558484.1 160879516 5742320 1709741..1710628 1 NC_010001.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1710628 hemC 5742320 hemC Clostridium phytofermentans ISDg porphobilinogen deaminase YP_001558484.1 1709741 D 357809 CDS YP_001558485.1 160879517 5742321 1710625..1712133 1 NC_010001.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: cth:Cthe_2528 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 1712133 5742321 Cphy_1371 Clostridium phytofermentans ISDg uroporphyrin-III C-methyltransferase YP_001558485.1 1710625 D 357809 CDS YP_001558486.1 160879518 5742322 1712170..1713165 1 NC_010001.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1713165 5742322 Cphy_1372 Clostridium phytofermentans ISDg delta-aminolevulinic acid dehydratase YP_001558486.1 1712170 D 357809 CDS YP_001558487.1 160879519 5742323 1713165..1714448 1 NC_010001.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1714448 5742323 Cphy_1373 Clostridium phytofermentans ISDg glutamate-1-semialdehyde aminotransferase YP_001558487.1 1713165 D 357809 CDS YP_001558488.1 160879520 5742324 1714606..1715763 1 NC_010001.1 TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: amt:Amet_0070 cobalamin biosynthesis protein CbiD; cobalamin biosynthesis protein CbiD 1715763 5742324 Cphy_1374 Clostridium phytofermentans ISDg cobalamin biosynthesis protein CbiD YP_001558488.1 1714606 D 357809 CDS YP_001558489.1 160879521 5742325 1715739..1716422 1 NC_010001.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ckl:CKL_0727 CbiL; precorrin-2 C20-methyltransferase 1716422 5742325 Cphy_1375 Clostridium phytofermentans ISDg precorrin-2 C20-methyltransferase YP_001558489.1 1715739 D 357809 CDS YP_001558490.1 160879522 5742326 1716424..1717182 1 NC_010001.1 KEGG: lmf:LMOf2365_1206 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C11-methyltransferase 1717182 5742326 Cphy_1376 Clostridium phytofermentans ISDg precorrin-4 C11-methyltransferase YP_001558490.1 1716424 D 357809 CDS YP_001558491.1 160879523 5742327 1717296..1718351 1 NC_010001.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: tde:TDE0615 cobalamin biosynthesis protein CbiG; cobalamin (vitamin B12) biosynthesis protein CbiG 1718351 5742327 Cphy_1377 Clostridium phytofermentans ISDg cobalamin (vitamin B12) biosynthesis protein CbiG YP_001558491.1 1717296 D 357809 CDS YP_001558492.1 160879524 5742328 1718348..1719076 1 NC_010001.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mta:Moth_1094 precorrin-3B C17-methyltransferase; precorrin-3B C17-methyltransferase 1719076 5742328 Cphy_1378 Clostridium phytofermentans ISDg precorrin-3B C17-methyltransferase YP_001558492.1 1718348 D 357809 CDS YP_001558493.1 160879525 5742329 1719119..1721086 1 NC_010001.1 TIGRFAM: precorrin-6x reductase; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Precorrin-6x reductase CbiJ/CobK; KEGG: ctc:CTC00734 precorrin-6B methylase/decarboxylase cbiT/cbiE; precorrin-6x reductase 1721086 5742329 Cphy_1379 Clostridium phytofermentans ISDg precorrin-6x reductase YP_001558493.1 1719119 D 357809 CDS YP_001558494.1 160879526 5742330 1721101..1722459 1 NC_010001.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: tte:TTE0375 Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 1722459 5742330 Cphy_1380 Clostridium phytofermentans ISDg cobyrinic acid a,c-diamide synthase YP_001558494.1 1721101 D 357809 CDS YP_001558495.1 160879527 5742331 1722496..1723020 1 NC_010001.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: cbe:Cbei_1263 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 1723020 5742331 Cphy_1381 Clostridium phytofermentans ISDg ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_001558495.1 1722496 D 357809 CDS YP_001558496.1 160879528 5742332 1723033..1723677 1 NC_010001.1 PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: amt:Amet_0069 precorrin-8X methylmutase CbiC/CobH; precorrin-8X methylmutase CbiC/CobH 1723677 5742332 Cphy_1382 Clostridium phytofermentans ISDg precorrin-8X methylmutase CbiC/CobH YP_001558496.1 1723033 D 357809 CDS YP_001558497.1 160879529 5742333 1724327..1725226 1 NC_010001.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cbe:Cbei_3712 cobalt ABC transporter, inner membrane subunit CbiQ; cobalt ABC transporter permease 1725226 5742333 Cphy_1383 Clostridium phytofermentans ISDg cobalt ABC transporter permease YP_001558497.1 1724327 D 357809 CDS YP_001558498.1 160879530 5742334 1725247..1726098 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3711 ABC transporter related; ABC transporter 1726098 5742334 Cphy_1384 Clostridium phytofermentans ISDg ABC transporter YP_001558498.1 1725247 D 357809 CDS YP_001558499.1 160879531 5742335 1726169..1726921 1 NC_010001.1 TIGRFAM: cobalamin biosynthesis protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: cbe:Cbei_3710 cobalamin biosynthesis protein CbiM; cobalamin biosynthesis protein CbiM 1726921 5742335 Cphy_1385 Clostridium phytofermentans ISDg cobalamin biosynthesis protein CbiM YP_001558499.1 1726169 D 357809 CDS YP_001558500.1 160879532 5742336 1726921..1727253 1 NC_010001.1 PFAM: Cobalt transport protein CbiN; KEGG: cbe:Cbei_3709 cobalt/cobalamin transport protein CbiN; cobalt transport protein CbiN 1727253 5742336 Cphy_1386 Clostridium phytofermentans ISDg cobalt transport protein CbiN YP_001558500.1 1726921 D 357809 CDS YP_001558501.1 160879533 5742337 1727421..1728206 1 NC_010001.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; anaerobic cobalt chelatase; KEGG: cno:NT01CX_0573 anaerobic cobalt chelatase; anaerobic cobalt chelatase 1728206 5742337 Cphy_1387 Clostridium phytofermentans ISDg anaerobic cobalt chelatase YP_001558501.1 1727421 D 357809 CDS YP_001558502.1 160879534 5742338 1728440..1729198 1 NC_010001.1 KEGG: ddi:DDBDRAFT_0218024 hypothetical protein; hypothetical protein 1729198 5742338 Cphy_1388 Clostridium phytofermentans ISDg hypothetical protein YP_001558502.1 1728440 D 357809 CDS YP_001558503.1 160879535 5742339 1729257..1729592 1 NC_010001.1 hypothetical protein 1729592 5742339 Cphy_1389 Clostridium phytofermentans ISDg hypothetical protein YP_001558503.1 1729257 D 357809 CDS YP_001558504.1 160879536 5742340 1729845..1730771 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lin:lin0218 similar to sugar ABC transporters, permeases; binding-protein-dependent transport systems inner membrane component 1730771 5742340 Cphy_1390 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001558504.1 1729845 D 357809 CDS YP_001558505.1 160879537 5742341 1730803..1731633 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00317 probable sugar ABC transporter, permease; binding-protein-dependent transport systems inner membrane component 1731633 5742341 Cphy_1391 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001558505.1 1730803 D 357809 CDS YP_001558506.1 160879538 5742342 1731696..1733045 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: cpe:CPE0371 conserved hypothetical protein; extracellular solute-binding protein 1733045 5742342 Cphy_1392 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001558506.1 1731696 D 357809 CDS YP_001558507.1 160879539 5742343 1733168..1734928 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cbe:Cbei_1382 histidine kinase internal region; histidine kinase internal region 1734928 5742343 Cphy_1393 Clostridium phytofermentans ISDg histidine kinase internal region YP_001558507.1 1733168 D 357809 CDS YP_001558508.1 160879540 5742344 1734977..1736548 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cpf:CPF_2344 DNA-binding response regulator, AraC family; two component AraC family transcriptional regulator 1736548 5742344 Cphy_1394 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001558508.1 1734977 D 357809 CDS YP_001558509.1 160879541 5742345 1736693..1738969 1 NC_010001.1 KEGG: afm:AFUA_3G12590 conserved hypothetical protein; hypothetical protein 1738969 5742345 Cphy_1395 Clostridium phytofermentans ISDg hypothetical protein YP_001558509.1 1736693 D 357809 CDS YP_001558510.1 160879542 5742346 1739448..1740800 1 NC_010001.1 PFAM: sodium:dicarboxylate symporter; KEGG: cpr:CPR_1019 sodium:dicarboxylate symporter family protein; sodium:dicarboxylate symporter 1740800 5742346 Cphy_1396 Clostridium phytofermentans ISDg sodium:dicarboxylate symporter YP_001558510.1 1739448 D 357809 CDS YP_001558511.1 160879543 5742347 complement(1740898..1741143) 1 NC_010001.1 hypothetical protein 1741143 5742347 Cphy_1397 Clostridium phytofermentans ISDg hypothetical protein YP_001558511.1 1740898 R 357809 CDS YP_001558512.1 160879544 5742348 1741796..1742128 1 NC_010001.1 hypothetical protein 1742128 5742348 Cphy_1398 Clostridium phytofermentans ISDg hypothetical protein YP_001558512.1 1741796 D 357809 CDS YP_001558513.1 160879545 5742349 1742125..1743120 1 NC_010001.1 KEGG: csc:Csac_2163 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein; dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein 1743120 5742349 Cphy_1399 Clostridium phytofermentans ISDg dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein YP_001558513.1 1742125 D 357809 CDS YP_001558514.1 160879546 5742350 1743270..1743755 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbf:CLI_2651 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1743755 5742350 Cphy_1400 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001558514.1 1743270 D 357809 CDS YP_001558515.1 160879547 5742351 1744116..1744316 1 NC_010001.1 hypothetical protein 1744316 5742351 Cphy_1401 Clostridium phytofermentans ISDg hypothetical protein YP_001558515.1 1744116 D 357809 CDS YP_001558516.1 160879548 5742352 1744371..1744859 1 NC_010001.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bce:BC2431 PhnB protein; 3-demethylubiquinone-9 3-methyltransferase 1744859 5742352 Cphy_1402 Clostridium phytofermentans ISDg 3-demethylubiquinone-9 3-methyltransferase YP_001558516.1 1744371 D 357809 CDS YP_001558517.1 160879549 5742353 1745089..1746060 1 NC_010001.1 PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: oih:OB0252 oxidoreductase; glycosyl hydrolase BNR repeat-containing glycosyl hydrolase 1746060 5742353 Cphy_1403 Clostridium phytofermentans ISDg glycosyl hydrolase BNR repeat-containing glycosyl hydrolase YP_001558517.1 1745089 D 357809 CDS YP_001558518.1 160879550 5742354 complement(1746592..1747128) 1 NC_010001.1 KEGG: cbf:CLI_3543 flavoredoxin; flavoredoxin 1747128 5742354 Cphy_1404 Clostridium phytofermentans ISDg flavoredoxin YP_001558518.1 1746592 R 357809 CDS YP_001558519.1 160879551 5742355 1747233..1747550 1 NC_010001.1 PFAM: helix-turn-helix HxlR type; KEGG: cbf:CLI_3542 transcriptional regulator; HxlR family transcriptional regulator 1747550 5742355 Cphy_1405 Clostridium phytofermentans ISDg HxlR family transcriptional regulator YP_001558519.1 1747233 D 357809 CDS YP_001558520.1 160879552 5742356 1747940..1748317 1 NC_010001.1 KEGG: cpr:CPR_0884 hypothetical protein; hypothetical protein 1748317 5742356 Cphy_1406 Clostridium phytofermentans ISDg hypothetical protein YP_001558520.1 1747940 D 357809 CDS YP_001558521.1 160879553 5742357 1748378..1748872 1 NC_010001.1 hypothetical protein 1748872 5742357 Cphy_1407 Clostridium phytofermentans ISDg hypothetical protein YP_001558521.1 1748378 D 357809 CDS YP_001558522.1 160879554 5742358 1748850..1749191 1 NC_010001.1 KEGG: sep:SE0117 ABC transporter (ATP-binding protein); ABC transporter ATP-binding protein 1749191 5742358 Cphy_1408 Clostridium phytofermentans ISDg ABC transporter ATP-binding protein YP_001558522.1 1748850 D 357809 CDS YP_001558523.1 160879555 5742359 1749318..1750049 1 NC_010001.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dsy:DSY4360 hypothetical protein; methyltransferase type 11 1750049 5742359 Cphy_1409 Clostridium phytofermentans ISDg methyltransferase type 11 YP_001558523.1 1749318 D 357809 CDS YP_001558524.1 160879556 5742360 1750400..1751233 1 NC_010001.1 PFAM: regulatory protein MerR; KEGG: cbf:CLI_2168 transcriptional regulator, MerR family; MerR family transcriptional regulator 1751233 5742360 Cphy_1410 Clostridium phytofermentans ISDg MerR family transcriptional regulator YP_001558524.1 1750400 D 357809 CDS YP_001558525.1 160879557 5742361 1751684..1751974 1 NC_010001.1 PFAM: microcompartments protein; KEGG: cbf:CLI_2149 bacterial microcompartments family protein; microcompartments protein 1751974 5742361 Cphy_1411 Clostridium phytofermentans ISDg microcompartments protein YP_001558525.1 1751684 D 357809 CDS YP_001558526.1 160879558 5742362 1751974..1752990 1 NC_010001.1 KEGG: amt:Amet_3840 membrane spanning protein; membrane spanning protein 1752990 5742362 Cphy_1412 Clostridium phytofermentans ISDg membrane spanning protein YP_001558526.1 1751974 D 357809 CDS YP_001558527.1 160879559 5742363 1752995..1753282 1 NC_010001.1 KEGG: dde:Dde_3289 hypothetical protein; hypothetical protein 1753282 5742363 Cphy_1413 Clostridium phytofermentans ISDg hypothetical protein YP_001558527.1 1752995 D 357809 CDS YP_001558528.1 160879560 5742364 1753303..1753599 1 NC_010001.1 PFAM: microcompartments protein; KEGG: cbf:CLI_2164 bacterial microcompartments family protein; microcompartments protein 1753599 5742364 Cphy_1414 Clostridium phytofermentans ISDg microcompartments protein YP_001558528.1 1753303 D 357809 CDS YP_001558529.1 160879561 5742365 1753617..1753925 1 NC_010001.1 PFAM: microcompartments protein; KEGG: amt:Amet_3837 microcompartments protein; microcompartments protein 1753925 5742365 Cphy_1415 Clostridium phytofermentans ISDg microcompartments protein YP_001558529.1 1753617 D 357809 CDS YP_001558530.1 160879562 5742366 1753956..1755491 1 NC_010001.1 KEGG: cbh:CLC_2061 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 1755491 5742366 Cphy_1416 Clostridium phytofermentans ISDg aldehyde dehydrogenase YP_001558530.1 1753956 D 357809 CDS YP_001558531.1 160879563 5742367 1755519..1758065 1 NC_010001.1 PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; KEGG: cbf:CLI_2161 formate acetyltransferase; formate C-acetyltransferase 1758065 5742367 Cphy_1417 Clostridium phytofermentans ISDg formate C-acetyltransferase YP_001558531.1 1755519 D 357809 CDS YP_001558532.1 160879564 5742368 1758088..1759035 1 NC_010001.1 KEGG: cbh:CLC_2059 glycyl-radical enzyme activating family protein; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Radical SAM domain protein; glycyl-radical activating family protein 1759035 5742368 Cphy_1418 Clostridium phytofermentans ISDg glycyl-radical activating family protein YP_001558532.1 1758088 D 357809 CDS YP_001558533.1 160879565 5742369 1759053..1759394 1 NC_010001.1 PFAM: microcompartments protein; KEGG: ctc:CTC01447 ethanolamine utilization protein eutS; microcompartments protein 1759394 5742369 Cphy_1419 Clostridium phytofermentans ISDg microcompartments protein YP_001558533.1 1759053 D 357809 CDS YP_001558534.1 160879566 5742370 1759391..1759822 1 NC_010001.1 KEGG: cbh:CLC_2057 GTP-binding protein, EutP/PduV family; EutP/PduV family GTP-binding protein 1759822 5742370 Cphy_1420 Clostridium phytofermentans ISDg EutP/PduV family GTP-binding protein YP_001558534.1 1759391 D 357809 CDS YP_001558535.1 160879567 5742371 1759845..1760981 1 NC_010001.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: ctc:CTC02182 alcetaldehyde dehydrogenase or NADPH-dependent butanol dehydrogenase; iron-containing alcohol dehydrogenase 1760981 5742371 Cphy_1421 Clostridium phytofermentans ISDg iron-containing alcohol dehydrogenase YP_001558535.1 1759845 D 357809 CDS YP_001558536.1 160879568 5742372 1760981..1761616 1 NC_010001.1 KEGG: cbh:CLC_2056 hypothetical protein; hypothetical protein 1761616 5742372 Cphy_1422 Clostridium phytofermentans ISDg hypothetical protein YP_001558536.1 1760981 D 357809 CDS YP_001558537.1 160879569 5742373 1761598..1762443 1 NC_010001.1 TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: cbh:CLC_2055 ethanolamine utilization protein EutJ family protein; ethanolamine utilization protein EutJ family protein 1762443 5742373 Cphy_1423 Clostridium phytofermentans ISDg ethanolamine utilization protein EutJ family protein YP_001558537.1 1761598 D 357809 CDS YP_001558538.1 160879570 5742374 1762457..1762762 1 NC_010001.1 PFAM: microcompartments protein; KEGG: drm:Dred_3272 microcompartments protein; microcompartments protein 1762762 5742374 Cphy_1424 Clostridium phytofermentans ISDg microcompartments protein YP_001558538.1 1762457 D 357809 CDS YP_001558539.1 160879571 5742375 1762756..1763019 1 NC_010001.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cbh:CLC_2053 polyhedral organelle formation protein; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 1763019 5742375 Cphy_1425 Clostridium phytofermentans ISDg ethanolamine utilization protein EutN/carboxysome structural protein Ccml YP_001558539.1 1762756 D 357809 CDS YP_001558540.1 160879572 5742376 1763035..1763664 1 NC_010001.1 PFAM: protein of unknown function DUF861 cupin_3; Ethanolamine utilisation EutQ family protein; Cupin 2 conserved barrel domain protein; KEGG: cbf:CLI_2153 ethanolamine utilization protein EutQ-like protein; ethanolamine utilisation EutQ family protein 1763664 5742376 Cphy_1426 Clostridium phytofermentans ISDg ethanolamine utilisation EutQ family protein YP_001558540.1 1763035 D 357809 CDS YP_001558541.1 160879573 5742377 1763676..1764362 1 NC_010001.1 PFAM: microcompartments protein; KEGG: cbh:CLC_2051 bacterial microcompartments family protein; microcompartments protein 1764362 5742377 Cphy_1427 Clostridium phytofermentans ISDg microcompartments protein YP_001558541.1 1763676 D 357809 CDS YP_001558542.1 160879574 5742378 1764393..1765940 1 NC_010001.1 TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: cbh:CLC_2050 acetaldehyde dehydrogenase (acetylating); acetaldehyde dehydrogenase 1765940 5742378 Cphy_1428 Clostridium phytofermentans ISDg acetaldehyde dehydrogenase YP_001558542.1 1764393 D 357809 CDS YP_001558543.1 160879575 5742379 1765969..1766604 1 NC_010001.1 PFAM: Propanediol utilization protein; KEGG: cbf:CLI_2150 propanediol utilization protein PduL-like protein; propanediol utilization protein 1766604 5742379 Cphy_1429 Clostridium phytofermentans ISDg propanediol utilization protein YP_001558543.1 1765969 D 357809 CDS YP_001558544.1 160879576 5742380 1766648..1766932 1 NC_010001.1 PFAM: microcompartments protein; KEGG: cbf:CLI_2149 bacterial microcompartments family protein; microcompartments protein 1766932 5742380 Cphy_1430 Clostridium phytofermentans ISDg microcompartments protein YP_001558544.1 1766648 D 357809 CDS YP_001558545.1 160879577 5742381 complement(1767122..1767364) 1 NC_010001.1 hypothetical protein 1767364 5742381 Cphy_1431 Clostridium phytofermentans ISDg hypothetical protein YP_001558545.1 1767122 R 357809 CDS YP_001558546.1 160879578 5742382 1767590..1768153 1 NC_010001.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ckl:CKL_0584 hypothetical protein; isoprenylcysteine carboxyl methyltransferase 1768153 5742382 Cphy_1432 Clostridium phytofermentans ISDg isoprenylcysteine carboxyl methyltransferase YP_001558546.1 1767590 D 357809 CDS YP_001558547.1 160879579 5742383 1768578..1769135 1 NC_010001.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: bce:BC2182 histidinol-phosphatase; HAD superfamily hydrolase 1769135 5742383 Cphy_1433 Clostridium phytofermentans ISDg HAD superfamily hydrolase YP_001558547.1 1768578 D 357809 CDS YP_001558548.1 160879580 5742384 1769381..1769956 1 NC_010001.1 PFAM: protein of unknown function DUF1349; KEGG: sma:SAV6390 hypothetical protein; hypothetical protein 1769956 5742384 Cphy_1434 Clostridium phytofermentans ISDg hypothetical protein YP_001558548.1 1769381 D 357809 CDS YP_001558549.1 160879581 5742385 1770444..1771535 1 NC_010001.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cbe:Cbei_3373 peptidoglycan-binding domain 1 protein; peptidoglycan binding domain-containing protein 1771535 5742385 Cphy_1435 Clostridium phytofermentans ISDg peptidoglycan binding domain-containing protein YP_001558549.1 1770444 D 357809 CDS YP_001558550.1 160879582 5742386 complement(1771908..1772750) 1 NC_010001.1 hypothetical protein 1772750 5742386 Cphy_1436 Clostridium phytofermentans ISDg hypothetical protein YP_001558550.1 1771908 R 357809 CDS YP_001558551.1 160879583 5742387 1775076..1775894 1 NC_010001.1 hypothetical protein 1775894 5742387 Cphy_1437 Clostridium phytofermentans ISDg hypothetical protein YP_001558551.1 1775076 D 357809 CDS YP_001558552.1 160879584 5742388 complement(1776094..1777269) 1 NC_010001.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1777269 5742388 Cphy_1438 Clostridium phytofermentans ISDg transposase IS204/IS1001/IS1096/IS1165 family protein YP_001558552.1 1776094 R 357809 CDS YP_001558553.1 160879585 5742389 complement(1777512..1779119) 1 NC_010001.1 PFAM: transposase IS4 family protein; KEGG: cpr:CPR_0485 ISCpe5, transposase; transposase IS4 family protein 1779119 5742389 Cphy_1439 Clostridium phytofermentans ISDg transposase IS4 family protein YP_001558553.1 1777512 R 357809 CDS YP_001558554.1 160879586 5742390 complement(1779244..1780071) 1 NC_010001.1 PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: dsy:DSY4643 hypothetical protein; peptidoglycan binding domain-containing protein 1780071 5742390 Cphy_1440 Clostridium phytofermentans ISDg peptidoglycan binding domain-containing protein YP_001558554.1 1779244 R 357809 CDS YP_001558555.1 160879587 5742391 1780507..1780962 1 NC_010001.1 PFAM: protein of unknown function DUF1349; KEGG: sco:SCO1870 hypothetical protein; hypothetical protein 1780962 5742391 Cphy_1441 Clostridium phytofermentans ISDg hypothetical protein YP_001558555.1 1780507 D 357809 CDS YP_001558556.1 160879588 5742393 1781737..1782627 1 NC_010001.1 KEGG: bca:BCE_2511 ABC transporter, permease; ABC transporter permease 1782627 5742393 Cphy_1443 Clostridium phytofermentans ISDg ABC transporter permease YP_001558556.1 1781737 D 357809 CDS YP_001558557.1 160879589 5742394 1782627..1784963 1 NC_010001.1 PFAM: protein of unknown function DUF214; KEGG: bcz:BCZK2228 ABC transporter, permease; hypothetical protein 1784963 5742394 Cphy_1444 Clostridium phytofermentans ISDg hypothetical protein YP_001558557.1 1782627 D 357809 CDS YP_001558558.1 160879590 5742395 1784975..1785742 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: btl:BALH_2221 ABC transporter, ATP-binding protein; ABC transporter 1785742 5742395 Cphy_1445 Clostridium phytofermentans ISDg ABC transporter YP_001558558.1 1784975 D 357809 CDS YP_001558559.1 160879591 5742396 complement(1785864..1787213) 1 NC_010001.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: cbf:CLI_2079 transcriptional regulator, GntR family/aminotransferase, classes I and II; transcriptional regulator 1787213 5742396 Cphy_1446 Clostridium phytofermentans ISDg transcriptional regulator YP_001558559.1 1785864 R 357809 CDS YP_001558560.1 160879592 5742397 1787325..1788239 1 NC_010001.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cbh:CLC_1960 hypothetical protein; hypothetical protein 1788239 5742397 Cphy_1447 Clostridium phytofermentans ISDg hypothetical protein YP_001558560.1 1787325 D 357809 CDS YP_001558561.1 160879593 5742398 1788560..1789609 1 NC_010001.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: llm:llmg_0312 phosphonate ABC transporter, phosphonate-binding protein PhnD; phosphonate ABC transporter, periplasmic phosphonate-binding protein 1789609 5742398 Cphy_1448 Clostridium phytofermentans ISDg phosphonate ABC transporter, periplasmic phosphonate-binding protein YP_001558561.1 1788560 D 357809 CDS YP_001558562.1 160879594 5742399 1789748..1790512 1 NC_010001.1 KEGG: lla:L97415 phosphonate ABC transporter ATP-binding protein; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate ABC transporter ATP-binding protein 1790512 5742399 Cphy_1449 Clostridium phytofermentans ISDg phosphonate ABC transporter ATP-binding protein YP_001558562.1 1789748 D 357809 CDS YP_001558563.1 160879595 5742400 1790509..1791330 1 NC_010001.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_0314 phosphonate transport system permease PhnB; phosphonate ABC transporter, inner membrane subunit 1791330 5742400 Cphy_1450 Clostridium phytofermentans ISDg phosphonate ABC transporter, inner membrane subunit YP_001558563.1 1790509 D 357809 CDS YP_001558564.1 160879596 5742401 1791345..1792154 1 NC_010001.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_0315 phosphonate ABC transporter permease; phosphonate ABC transporter, inner membrane subunit 1792154 5742401 Cphy_1451 Clostridium phytofermentans ISDg phosphonate ABC transporter, inner membrane subunit YP_001558564.1 1791345 D 357809 CDS YP_001558565.1 160879597 5742402 1792326..1793861 1 NC_010001.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: bcy:Bcer98_2341 5'-nucleotidase domain protein; 5'-nucleotidase 1793861 5742402 Cphy_1452 Clostridium phytofermentans ISDg 5'-nucleotidase YP_001558565.1 1792326 D 357809 CDS YP_001558566.1 160879598 5742403 1793961..1794647 1 NC_010001.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: tte:TTE0993 Glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 1794647 5742403 Cphy_1453 Clostridium phytofermentans ISDg glycerophosphoryl diester phosphodiesterase YP_001558566.1 1793961 D 357809 CDS YP_001558567.1 160879599 5742404 1794648..1795652 1 NC_010001.1 PFAM: regulatory protein LacI; KEGG: cpf:CPF_1547 transcriptional regulator, LacI family; LacI family transcriptional regulator 1795652 5742404 Cphy_1454 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001558567.1 1794648 D 357809 CDS YP_001558568.1 160879600 5742405 1795903..1797531 1 NC_010001.1 KEGG: dsy:DSY1960 hypothetical protein; hypothetical protein 1797531 5742405 Cphy_1455 Clostridium phytofermentans ISDg hypothetical protein YP_001558568.1 1795903 D 357809 CDS YP_001558569.1 160879601 5742406 complement(1797744..1798364) 1 NC_010001.1 KEGG: mbb:BCG_2012 hypothetical protein; hypothetical protein 1798364 5742406 Cphy_1456 Clostridium phytofermentans ISDg hypothetical protein YP_001558569.1 1797744 R 357809 CDS YP_001558570.1 160879602 5742407 complement(1798453..1799430) 1 NC_010001.1 PFAM: beta-lactamase; KEGG: ckl:CKL_0345 predicted peptidoglycan biosynthesis protein; beta-lactamase 1799430 5742407 Cphy_1457 Clostridium phytofermentans ISDg beta-lactamase YP_001558570.1 1798453 R 357809 CDS YP_001558571.1 160879603 5742408 complement(1799557..1800042) 1 NC_010001.1 PFAM: regulatory protein MerR; KEGG: cpr:CPR_0445 transcriptional regulator, MerR family; MerR family transcriptional regulator 1800042 5742408 Cphy_1458 Clostridium phytofermentans ISDg MerR family transcriptional regulator YP_001558571.1 1799557 R 357809 CDS YP_001558572.1 160879604 5742409 complement(1800584..1801462) 1 NC_010001.1 KEGG: amt:Amet_2318 L-serine dehydratase, iron-sulfur-dependent, alpha subunit; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: serine dehydratase alpha chain; L-serine dehydratase, iron-sulfur-dependent subunit alpha 1801462 5742409 Cphy_1459 Clostridium phytofermentans ISDg L-serine dehydratase, iron-sulfur-dependent subunit alpha YP_001558572.1 1800584 R 357809 CDS YP_001558573.1 160879605 5742410 complement(1801472..1802140) 1 NC_010001.1 TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: amino acid-binding ACT domain protein; serine dehydratase beta chain; KEGG: tte:TTE1008 L-serine deaminase; L-serine dehydratase, iron-sulfur-dependent subunit beta 1802140 5742410 Cphy_1460 Clostridium phytofermentans ISDg L-serine dehydratase, iron-sulfur-dependent subunit beta YP_001558573.1 1801472 R 357809 CDS YP_001558574.1 160879606 5742411 complement(1802168..1803382) 1 NC_010001.1 PFAM: sodium:dicarboxylate symporter; KEGG: cdf:CD2693 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 1803382 5742411 Cphy_1461 Clostridium phytofermentans ISDg sodium:dicarboxylate symporter YP_001558574.1 1802168 R 357809 CDS YP_001558575.1 160879607 5742412 1804148..1804426 1 NC_010001.1 KEGG: cbe:Cbei_0358 hypothetical protein; hypothetical protein 1804426 5742412 Cphy_1462 Clostridium phytofermentans ISDg hypothetical protein YP_001558575.1 1804148 D 357809 CDS YP_001558576.1 160879608 5742413 1804648..1805961 1 NC_010001.1 PFAM: GTPase EngC; KEGG: cdf:CD3368A hypothetical protein; GTPase EngC 1805961 5742413 Cphy_1463 Clostridium phytofermentans ISDg GTPase EngC YP_001558576.1 1804648 D 357809 CDS YP_001558577.1 160879609 5742414 1806408..1806950 1 NC_010001.1 PFAM: carbonic anhydrase; KEGG: bvu:BVU_0341 hypothetical protein; carbonic anhydrase 1806950 5742414 Cphy_1464 Clostridium phytofermentans ISDg carbonic anhydrase YP_001558577.1 1806408 D 357809 CDS YP_001558578.1 160879610 5742415 1807159..1808109 1 NC_010001.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ckl:CKL_0436 SerA; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 1808109 5742415 Cphy_1465 Clostridium phytofermentans ISDg D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit YP_001558578.1 1807159 D 357809 CDS YP_001558579.1 160879611 5742416 1808433..1809905 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cbe:Cbei_1804 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1809905 5742416 Cphy_1466 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001558579.1 1808433 D 357809 CDS YP_001558580.1 160879612 5742417 1809907..1810596 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: chy:CHY_0092 DNA-binding response regulator; two component transcriptional regulator 1810596 5742417 Cphy_1467 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001558580.1 1809907 D 357809 CDS YP_001558581.1 160879613 5742418 1810822..1811781 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afu:AF1136 ABC-2 type transport system ATP-binding protein; ABC transporter 1811781 5742418 Cphy_1468 Clostridium phytofermentans ISDg ABC transporter YP_001558581.1 1810822 D 357809 CDS YP_001558582.1 160879614 5742419 1811778..1812542 1 NC_010001.1 PFAM: ABC-2 type transporter; KEGG: cbe:Cbei_3825 ABC transporter permease; ABC-2 type transporter 1812542 5742419 Cphy_1469 Clostridium phytofermentans ISDg ABC-2 type transporter YP_001558582.1 1811778 D 357809 CDS YP_001558583.1 160879615 5742420 1812539..1813093 1 NC_010001.1 hypothetical protein 1813093 5742420 Cphy_1470 Clostridium phytofermentans ISDg hypothetical protein YP_001558583.1 1812539 D 357809 CDS YP_001558584.1 160879616 5742421 1813126..1814313 1 NC_010001.1 PFAM: protein of unknown function DUF347; KEGG: rha:RHA1_ro08567 hypothetical protein; hypothetical protein 1814313 5742421 Cphy_1471 Clostridium phytofermentans ISDg hypothetical protein YP_001558584.1 1813126 D 357809 CDS YP_001558585.1 160879617 5742422 complement(1814482..1815366) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_3990 transcription activator, effector binding; AraC family transcriptional regulator 1815366 5742422 Cphy_1472 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001558585.1 1814482 R 357809 CDS YP_001558586.1 160879618 5742423 1815592..1816737 1 NC_010001.1 PFAM: esterase; KEGG: sru:SRU_2005 esterase superfamily; esterase 1816737 5742423 Cphy_1473 Clostridium phytofermentans ISDg esterase YP_001558586.1 1815592 D 357809 CDS YP_001558587.1 160879619 5742424 1817390..1819093 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cbe:Cbei_3119 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1819093 5742424 Cphy_1474 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001558587.1 1817390 D 357809 CDS YP_001558588.1 160879620 5742425 complement(1819291..1820217) 1 NC_010001.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: cbf:CLI_1602 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 1820217 5742425 Cphy_1475 Clostridium phytofermentans ISDg C4-dicarboxylate transporter/malic acid transport protein YP_001558588.1 1819291 R 357809 CDS YP_001558589.1 160879621 5742426 complement(1820233..1820706) 1 NC_010001.1 TIGRFAM: C_GCAxxG_C_C family protein; KEGG: cdf:CD3018 hypothetical protein; C_GCAxxG_C_C family protein 1820706 5742426 Cphy_1476 Clostridium phytofermentans ISDg C_GCAxxG_C_C family protein YP_001558589.1 1820233 R 357809 CDS YP_001558590.1 160879622 5742427 1821004..1821903 1 NC_010001.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cdf:CD1079 LysR-family transcriptional regulator; LysR family transcriptional regulator 1821903 5742427 Cphy_1477 Clostridium phytofermentans ISDg LysR family transcriptional regulator YP_001558590.1 1821004 D 357809 CDS YP_001558591.1 160879623 5742428 1822057..1823082 1 NC_010001.1 PFAM: molybdopterin binding domain; KEGG: cbe:Cbei_1988 molybdopterin binding domain; molybdopterin binding domain-containing protein 1823082 5742428 Cphy_1478 Clostridium phytofermentans ISDg molybdopterin binding domain-containing protein YP_001558591.1 1822057 D 357809 CDS YP_001558592.1 160879624 5742429 1823097..1823588 1 NC_010001.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: cpf:CPF_2340 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C 1823588 5742429 Cphy_1479 Clostridium phytofermentans ISDg molybdenum cofactor biosynthesis protein C YP_001558592.1 1823097 D 357809 CDS YP_001558593.1 160879625 5742430 1823691..1824689 1 NC_010001.1 KEGG: cbe:Cbei_1989 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 1824689 5742430 Cphy_1480 Clostridium phytofermentans ISDg molybdenum cofactor biosynthesis protein A YP_001558593.1 1823691 D 357809 CDS YP_001558594.1 160879626 5742431 1824695..1825627 1 NC_010001.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MOSC domain containing protein; KEGG: cpr:CPR_2055 molybdenum cofactor synthesis protein; molybdenum cofactor synthesis domain-containing protein 1825627 5742431 Cphy_1481 Clostridium phytofermentans ISDg molybdenum cofactor synthesis domain-containing protein YP_001558594.1 1824695 D 357809 CDS YP_001558595.1 160879627 5742432 1825678..1826556 1 NC_010001.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: efa:EF1397 molybdenum ABC transporter, molybdenum-binding protein; molybdenum ABC transporter, periplasmic molybdate-binding protein 1826556 5742432 Cphy_1482 Clostridium phytofermentans ISDg molybdenum ABC transporter, periplasmic molybdate-binding protein YP_001558595.1 1825678 D 357809 CDS YP_001558596.1 160879628 5742433 1826681..1827346 1 NC_010001.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msi:Msm_1610 molybdate ABC transporter, permease component, ModC; molybdate ABC transporter inner membrane subunit 1827346 5742433 Cphy_1483 Clostridium phytofermentans ISDg molybdate ABC transporter inner membrane subunit YP_001558596.1 1826681 D 357809 CDS YP_001558597.1 160879629 5742434 1827451..1828626 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msi:Msm_1611 molybdate ABC transporter, ATPase component; ABC transporter 1828626 5742434 Cphy_1484 Clostridium phytofermentans ISDg ABC transporter YP_001558597.1 1827451 D 357809 CDS YP_001558598.1 160879630 5742435 1828657..1829781 1 NC_010001.1 PFAM: protein of unknown function DUF182; KEGG: dsy:DSY0877 hypothetical protein; hypothetical protein 1829781 5742435 Cphy_1485 Clostridium phytofermentans ISDg hypothetical protein YP_001558598.1 1828657 D 357809 CDS YP_001558599.1 160879631 5742436 1829925..1830947 1 NC_010001.1 KEGG: dsy:DSY4694 hypothetical protein; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein domain protein; selenide, water dikinase 1830947 5742436 Cphy_1486 Clostridium phytofermentans ISDg selenide, water dikinase YP_001558599.1 1829925 D 357809 CDS YP_001558600.1 160879632 5742437 1831098..1831769 1 NC_010001.1 PFAM: SirA family protein; KEGG: cdf:CD3667 hypothetical protein; SirA family protein 1831769 5742437 Cphy_1487 Clostridium phytofermentans ISDg SirA family protein YP_001558600.1 1831098 D 357809 CDS YP_001558601.1 160879633 5742438 1831953..1832798 1 NC_010001.1 KEGG: cbh:CLC_2789 hypothetical protein; hypothetical protein 1832798 5742438 Cphy_1488 Clostridium phytofermentans ISDg hypothetical protein YP_001558601.1 1831953 D 357809 CDS YP_001558602.1 160879634 5742439 1832814..1833953 1 NC_010001.1 KEGG: tte:TTE2789 selenocysteine lyase; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; glycine hydroxymethyltransferase; cysteine desulfurase 1833953 5742439 Cphy_1489 Clostridium phytofermentans ISDg cysteine desulfurase YP_001558602.1 1832814 D 357809 CDS YP_001558603.1 160879635 5742440 1833964..1834200 1 NC_010001.1 hypothetical protein 1834200 5742440 Cphy_1490 Clostridium phytofermentans ISDg hypothetical protein YP_001558603.1 1833964 D 357809 CDS YP_001558604.1 160879636 5744313 1834253..1834996 1 NC_010001.1 KEGG: tva:TVAG_164520 conserved hypothetical protein; hypothetical protein 1834996 5744313 Cphy_1491 Clostridium phytofermentans ISDg hypothetical protein YP_001558604.1 1834253 D 357809 CDS YP_001558605.1 160879637 5744314 1835240..1835905 1 NC_010001.1 PFAM: YheO domain protein; KEGG: efa:EF0096 hypothetical protein; hypothetical protein 1835905 5744314 Cphy_1492 Clostridium phytofermentans ISDg hypothetical protein YP_001558605.1 1835240 D 357809 CDS YP_001558606.1 160879638 5744315 1836361..1836735 1 NC_010001.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: cbe:Cbei_0471 endoribonuclease L-PSP; endoribonuclease L-PSP 1836735 5744315 Cphy_1493 Clostridium phytofermentans ISDg endoribonuclease L-PSP YP_001558606.1 1836361 D 357809 CDS YP_001558607.1 160879639 5744316 1837065..1838402 1 NC_010001.1 in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS; chlorohydrolase/aminohydrolase 1838402 5744316 Cphy_1494 Clostridium phytofermentans ISDg chlorohydrolase/aminohydrolase YP_001558607.1 1837065 D 357809 CDS YP_001558608.1 160879640 5744317 1838455..1840137 1 NC_010001.1 KEGG: efa:EF2581 oxidoreductase, pyridine nucleotide-disulfide family; hypothetical protein 1840137 5744317 Cphy_1495 Clostridium phytofermentans ISDg hypothetical protein YP_001558608.1 1838455 D 357809 CDS YP_001558609.1 160879641 5744318 1840384..1841757 1 NC_010001.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 1841757 5744318 Cphy_1496 Clostridium phytofermentans ISDg phenylhydantoinase YP_001558609.1 1840384 D 357809 CDS YP_001558610.1 160879642 5744319 1841927..1844488 1 NC_010001.1 TIGRFAM: selenium-dependent molybdenum hydroxylase 1; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: cbe:Cbei_1982 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; selenium-dependent molybdenum hydroxylase 1 1844488 5744319 Cphy_1497 Clostridium phytofermentans ISDg selenium-dependent molybdenum hydroxylase 1 YP_001558610.1 1841927 D 357809 CDS YP_001558611.1 160879643 5744320 1844555..1845838 1 NC_010001.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: efa:EF2573 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 1845838 5744320 Cphy_1498 Clostridium phytofermentans ISDg xanthine/uracil/vitamin C permease YP_001558611.1 1844555 D 357809 CDS YP_001558612.1 160879644 5744321 1846092..1847312 1 NC_010001.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 1847312 5744321 Cphy_1499 Clostridium phytofermentans ISDg diaminopropionate ammonia-lyase YP_001558612.1 1846092 D 357809 CDS YP_001558613.1 160879645 5744322 1847407..1848591 1 NC_010001.1 Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; peptidase 1848591 5744322 Cphy_1500 Clostridium phytofermentans ISDg peptidase YP_001558613.1 1847407 D 357809 CDS YP_001558614.1 160879646 5744323 1848945..1850408 1 NC_010001.1 PFAM: D-aminoacylase domain protein; Amidohydrolase 3; KEGG: drm:Dred_0263 N-acyl-D-amino-acid deacylase; N-acyl-D-glutamate deacylase 1850408 5744323 Cphy_1501 Clostridium phytofermentans ISDg N-acyl-D-glutamate deacylase YP_001558614.1 1848945 D 357809 CDS YP_001558615.1 160879647 5744324 complement(1850685..1851185) 1 NC_010001.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: bfr:BF3573 peptide methionine sulfoxide reductase; peptide methionine sulfoxide reductase 1851185 5744324 Cphy_1502 Clostridium phytofermentans ISDg peptide methionine sulfoxide reductase YP_001558615.1 1850685 R 357809 CDS YP_001558616.1 160879648 5744325 complement(1851557..1852435) 1 NC_010001.1 PFAM: glucose-inhibited division protein A; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cth:Cthe_1945 thioredoxin-disulfide reductase; thioredoxin-disulfide reductase 1852435 5744325 Cphy_1503 Clostridium phytofermentans ISDg thioredoxin-disulfide reductase YP_001558616.1 1851557 R 357809 CDS YP_001558617.1 160879649 5744326 1852676..1853956 1 NC_010001.1 PFAM: protein of unknown function DUF1576; KEGG: amt:Amet_4320 protein of unknown function DUF1576; hypothetical protein 1853956 5744326 Cphy_1504 Clostridium phytofermentans ISDg hypothetical protein YP_001558617.1 1852676 D 357809 CDS YP_001558618.1 160879650 5744327 1853953..1854306 1 NC_010001.1 KEGG: amt:Amet_4319 hypothetical protein; hypothetical protein 1854306 5744327 Cphy_1505 Clostridium phytofermentans ISDg hypothetical protein YP_001558618.1 1853953 D 357809 CDS YP_001558619.1 160879651 5744328 1854463..1855635 1 NC_010001.1 PFAM: NUDIX hydrolase; KEGG: mma:MM_2810 hypothetical protein; NUDIX hydrolase 1855635 5744328 Cphy_1506 Clostridium phytofermentans ISDg NUDIX hydrolase YP_001558619.1 1854463 D 357809 CDS YP_001558620.1 160879652 5744329 1855688..1856224 1 NC_010001.1 PFAM: protein of unknown function DUF74; KEGG: ckl:CKL_2433 hypothetical protein; hypothetical protein 1856224 5744329 Cphy_1507 Clostridium phytofermentans ISDg hypothetical protein YP_001558620.1 1855688 D 357809 CDS YP_001558621.1 160879653 5744330 1856701..1857324 1 NC_010001.1 KEGG: cbe:Cbei_1845 hypothetical protein; hypothetical protein 1857324 5744330 Cphy_1508 Clostridium phytofermentans ISDg hypothetical protein YP_001558621.1 1856701 D 357809 CDS YP_001558622.1 160879654 5744331 1857328..1857891 1 NC_010001.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cac:CAC0760 uncharacterized conserved protein, YTFE family, possibly metal-binding; hemerythrin HHE cation binding domain-containing protein 1857891 5744331 Cphy_1509 Clostridium phytofermentans ISDg hemerythrin HHE cation binding domain-containing protein YP_001558622.1 1857328 D 357809 CDS YP_001558623.1 160879655 5744332 1858460..1860022 1 NC_010001.1 PFAM: glycoside hydrolase family 10; KEGG: cth:Cthe_0912 glycoside hydrolase, family 10; endo-1,4-beta-xylanase 1860022 5744332 Cphy_1510 Clostridium phytofermentans ISDg endo-1,4-beta-xylanase YP_001558623.1 1858460 D 357809 CDS YP_001558624.1 160879656 5744333 1860368..1860739 1 NC_010001.1 KEGG: lme:LEUM_1913 hypothetical protein; hypothetical protein 1860739 5744333 Cphy_1511 Clostridium phytofermentans ISDg hypothetical protein YP_001558624.1 1860368 D 357809 CDS YP_001558625.1 160879657 5744334 1860777..1861352 1 NC_010001.1 PFAM: Rhomboid family protein; KEGG: cth:Cthe_0259 rhomboid-like protein; rhomboid family protein 1861352 5744334 Cphy_1512 Clostridium phytofermentans ISDg rhomboid family protein YP_001558625.1 1860777 D 357809 CDS YP_001558626.1 160879658 5744335 1861516..1862085 1 NC_010001.1 PFAM: regulatory protein TetR; KEGG: cac:CAC1668 transcriptional regulator, AcrR family; TetR family transcriptional regulator 1862085 5744335 Cphy_1513 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001558626.1 1861516 D 357809 CDS YP_001558627.1 160879659 5744336 1862596..1864533 1 NC_010001.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tte:TTE2131 NADH:flavin oxidoreductase, Old Yellow enzyme family; NADH:flavin oxidoreductase 1864533 5744336 Cphy_1514 Clostridium phytofermentans ISDg NADH:flavin oxidoreductase YP_001558627.1 1862596 D 357809 CDS YP_001558628.1 160879660 5744337 complement(1864660..1864956) 1 NC_010001.1 KEGG: cbe:Cbei_4414 hypothetical protein; hypothetical protein 1864956 5744337 Cphy_1515 Clostridium phytofermentans ISDg hypothetical protein YP_001558628.1 1864660 R 357809 CDS YP_001558629.1 160879661 5744338 1865404..1866213 1 NC_010001.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: cdf:CD2101 FAD-binding subunit of oxidoreductase; molybdopterin dehydrogenase FAD-binding 1866213 5744338 Cphy_1516 Clostridium phytofermentans ISDg molybdopterin dehydrogenase FAD-binding YP_001558629.1 1865404 D 357809 CDS YP_001558630.1 160879662 5744339 1866203..1866673 1 NC_010001.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: drm:Dred_2775 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1866673 5744339 Cphy_1517 Clostridium phytofermentans ISDg 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001558630.1 1866203 D 357809 CDS YP_001558631.1 160879663 5744340 1866673..1868967 1 NC_010001.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: drm:Dred_2776 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 1868967 5744340 Cphy_1518 Clostridium phytofermentans ISDg molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001558631.1 1866673 D 357809 CDS YP_001558632.1 160879664 5744341 1868957..1869568 1 NC_010001.1 KEGG: sso:SSO2432 hypothetical protein; hypothetical protein 1869568 5744341 Cphy_1519 Clostridium phytofermentans ISDg hypothetical protein YP_001558632.1 1868957 D 357809 CDS YP_001558633.1 160879665 5744342 1869750..1871774 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: tte:TTE0448 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1871774 5744342 Cphy_1520 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001558633.1 1869750 D 357809 CDS YP_001558634.1 160879666 5744343 1871977..1872732 1 NC_010001.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 1872732 nagB 5744343 nagB Clostridium phytofermentans ISDg glucosamine-6-phosphate deaminase YP_001558634.1 1871977 D 357809 CDS YP_001558635.1 160879667 5744344 complement(1872887..1873198) 1 NC_010001.1 KEGG: cbe:Cbei_3840 hypothetical protein; hypothetical protein 1873198 5744344 Cphy_1522 Clostridium phytofermentans ISDg hypothetical protein YP_001558635.1 1872887 R 357809 CDS YP_001558636.1 160879668 5744345 complement(1873259..1874320) 1 NC_010001.1 KEGG: ngo:NGO0355 hypothetical protein; hypothetical protein 1874320 5744345 Cphy_1523 Clostridium phytofermentans ISDg hypothetical protein YP_001558636.1 1873259 R 357809 CDS YP_001558637.1 160879669 5744346 1874838..1875101 1 NC_010001.1 KEGG: btl:BALH_1616 hypothetical protein; hypothetical protein 1875101 5744346 Cphy_1524 Clostridium phytofermentans ISDg hypothetical protein YP_001558637.1 1874838 D 357809 CDS YP_001558638.1 160879670 5744347 1875401..1875937 1 NC_010001.1 hypothetical protein 1875937 5744347 Cphy_1525 Clostridium phytofermentans ISDg hypothetical protein YP_001558638.1 1875401 D 357809 CDS YP_001558639.1 160879671 5744348 1875994..1876290 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rca:Rcas_2701 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1876290 5744348 Cphy_1526 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001558639.1 1875994 D 357809 CDS YP_001558640.1 160879672 5744349 1876583..1877041 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: llm:llmg_1669 acetyltransferase; N-acetyltransferase GCN5 1877041 5744349 Cphy_1527 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001558640.1 1876583 D 357809 CDS YP_001558641.1 160879673 5744350 complement(1877364..1878218) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_4840 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 1878218 5744350 Cphy_1528 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001558641.1 1877364 R 357809 CDS YP_001558642.1 160879674 5744351 1878477..1879796 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: cbe:Cbei_4680 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1879796 5744351 Cphy_1529 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001558642.1 1878477 D 357809 CDS YP_001558643.1 160879675 5744352 1879890..1880777 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2543 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1880777 5744352 Cphy_1530 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001558643.1 1879890 D 357809 CDS YP_001558644.1 160879676 5744353 1880788..1881615 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2542 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1881615 5744353 Cphy_1531 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001558644.1 1880788 D 357809 CDS YP_001558645.1 160879677 5744354 1881755..1882096 1 NC_010001.1 PFAM: Domain of unknown function DUF1801; KEGG: rci:RCIX1712 hypothetical protein; hypothetical protein 1882096 5744354 Cphy_1532 Clostridium phytofermentans ISDg hypothetical protein YP_001558645.1 1881755 D 357809 CDS YP_001558646.1 160879678 5744355 1882261..1882824 1 NC_010001.1 KEGG: cdf:CD2540 NADH oxidase; NADH oxidase 1882824 5744355 Cphy_1533 Clostridium phytofermentans ISDg NADH oxidase YP_001558646.1 1882261 D 357809 CDS YP_001558647.1 160879679 5744356 1883171..1884274 1 NC_010001.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: lca:LSEI_2779 metal-dependent hydrolase; endonuclease/exonuclease/phosphatase 1884274 5744356 Cphy_1534 Clostridium phytofermentans ISDg endonuclease/exonuclease/phosphatase YP_001558647.1 1883171 D 357809 CDS YP_001558648.1 160879680 5744357 1884626..1886500 1 NC_010001.1 KEGG: amt:Amet_1714 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; arginyl-tRNA synthetase 1886500 5744357 Cphy_1535 Clostridium phytofermentans ISDg arginyl-tRNA synthetase YP_001558648.1 1884626 D 357809 CDS YP_001558649.1 160879681 5744358 1886669..1887664 1 NC_010001.1 PFAM: NUDIX hydrolase; GCN5-related N-acetyltransferase; KEGG: dsy:DSY4332 hypothetical protein; NUDIX hydrolase 1887664 5744358 Cphy_1536 Clostridium phytofermentans ISDg NUDIX hydrolase YP_001558649.1 1886669 D 357809 CDS YP_001558650.1 160879682 5744359 1887677..1888474 1 NC_010001.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ctc:CTC00693 conserved protein, endonuclease-like; xylose isomerase domain-containing protein 1888474 5744359 Cphy_1537 Clostridium phytofermentans ISDg xylose isomerase domain-containing protein YP_001558650.1 1887677 D 357809 CDS YP_001558651.1 160879683 5744360 1888747..1889829 1 NC_010001.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: ckl:CKL_1774 GcvT; glycine cleavage system T protein 1889829 5744360 Cphy_1538 Clostridium phytofermentans ISDg glycine cleavage system T protein YP_001558651.1 1888747 D 357809 CDS YP_001558652.1 160879684 5744361 1889855..1890238 1 NC_010001.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 1890238 5744361 Cphy_1539 Clostridium phytofermentans ISDg glycine cleavage system protein H YP_001558652.1 1889855 D 357809 CDS YP_001558653.1 160879685 5744362 1890252..1891571 1 NC_010001.1 PFAM: glycine cleavage system P-protein; KEGG: ckl:CKL_1772 GcvPA; glycine dehydrogenase 1891571 5744362 Cphy_1540 Clostridium phytofermentans ISDg glycine dehydrogenase YP_001558653.1 1890252 D 357809 CDS YP_001558654.1 160879686 5744363 1891576..1893036 1 NC_010001.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 1893036 5744363 Cphy_1541 Clostridium phytofermentans ISDg glycine dehydrogenase subunit 2 YP_001558654.1 1891576 D 357809 CDS YP_001558655.1 160879687 5744364 1893020..1894018 1 NC_010001.1 TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: ckl:CKL_1770 LplA; lipoyltransferase and lipoate-protein ligase 1894018 5744364 Cphy_1542 Clostridium phytofermentans ISDg lipoyltransferase and lipoate-protein ligase YP_001558655.1 1893020 D 357809 CDS YP_001558656.1 160879688 5744365 1894237..1895649 1 NC_010001.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: ckl:CKL_1769 BfmBC; dihydrolipoamide dehydrogenase 1895649 5744365 Cphy_1543 Clostridium phytofermentans ISDg dihydrolipoamide dehydrogenase YP_001558656.1 1894237 D 357809 CDS YP_001558657.1 160879689 5744366 1896045..1897952 1 NC_010001.1 SMART: helicase c2; KEGG: amt:Amet_3769 helicase C2; helicase c2 1897952 5744366 Cphy_1544 Clostridium phytofermentans ISDg helicase c2 YP_001558657.1 1896045 D 357809 CDS YP_001558658.1 160879690 5744367 1898031..1898312 1 NC_010001.1 PFAM: protein of unknown function DUF503; KEGG: cbf:CLI_2969 hypothetical protein; hypothetical protein 1898312 5744367 Cphy_1545 Clostridium phytofermentans ISDg hypothetical protein YP_001558658.1 1898031 D 357809 CDS YP_001558659.1 160879691 5744368 complement(1898594..1899421) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_1324 transcriptional regulator; AraC family transcriptional regulator 1899421 5744368 Cphy_1546 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001558659.1 1898594 R 357809 CDS YP_001558660.1 160879692 5744369 1899632..1901068 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_1357 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1901068 5744369 Cphy_1547 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001558660.1 1899632 D 357809 CDS YP_001558661.1 160879693 5744370 1901146..1902138 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2553 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1902138 5744370 Cphy_1548 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001558661.1 1901146 D 357809 CDS YP_001558662.1 160879694 5744371 1902250..1904037 1 NC_010001.1 KEGG: efa:EF1234 ABC transporter, substrate-binding protein; hypothetical protein 1904037 5744371 Cphy_1549 Clostridium phytofermentans ISDg hypothetical protein YP_001558662.1 1902250 D 357809 CDS YP_001558663.1 160879695 5744372 1904098..1904709 1 NC_010001.1 KEGG: llm:llmg_1837 hypothetical protein; hypothetical protein 1904709 5744372 Cphy_1550 Clostridium phytofermentans ISDg hypothetical protein YP_001558663.1 1904098 D 357809 CDS YP_001558664.1 160879696 5744373 1904727..1905401 1 NC_010001.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: det:DET0533 HAD-superfamily hydrolase, subfamily IA; HAD family hydrolase 1905401 5744373 Cphy_1551 Clostridium phytofermentans ISDg HAD family hydrolase YP_001558664.1 1904727 D 357809 CDS YP_001558665.1 160879697 5744374 complement(1905605..1905943) 1 NC_010001.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: ckl:CKL_0346 hypothetical protein; cupin 1905943 5744374 Cphy_1552 Clostridium phytofermentans ISDg cupin YP_001558665.1 1905605 R 357809 CDS YP_001558666.1 160879698 5744375 complement(1905958..1906143) 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dsy:DSY1868 hypothetical protein; 4Fe-4S ferredoxin 1906143 5744375 Cphy_1553 Clostridium phytofermentans ISDg 4Fe-4S ferredoxin YP_001558666.1 1905958 R 357809 CDS YP_001558667.1 160879699 5744376 1906256..1907188 1 NC_010001.1 PFAM: helix-turn-helix domain protein; KEGG: bcy:Bcer98_3869 helix-turn-helix domain protein; XRE family transcriptional regulator 1907188 5744376 Cphy_1554 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001558667.1 1906256 D 357809 CDS YP_001558668.1 160879700 5744377 1907640..1913306 1 NC_010001.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: surface protein from Gram-positive cocci anchor region; Cna B domain protein; Collagen binding domain protein; KEGG: bha:BH2014 hypothetical protein; cell wall anchor domain-containing protein 1913306 5744377 Cphy_1555 Clostridium phytofermentans ISDg cell wall anchor domain-containing protein YP_001558668.1 1907640 D 357809 CDS YP_001558669.1 160879701 5744378 1913686..1914504 1 NC_010001.1 PFAM: transglutaminase domain protein; KEGG: cno:NT01CX_0209 transglutaminase-like enzyme, cysteine protease; transglutaminase domain-containing protein 1914504 5744378 Cphy_1556 Clostridium phytofermentans ISDg transglutaminase domain-containing protein YP_001558669.1 1913686 D 357809 CDS YP_001558670.1 160879702 5744379 complement(1914670..1915326) 1 NC_010001.1 KEGG: dsy:DSY0637 hypothetical protein; hypothetical protein 1915326 5744379 Cphy_1557 Clostridium phytofermentans ISDg hypothetical protein YP_001558670.1 1914670 R 357809 CDS YP_001558671.1 160879703 5744380 complement(1915316..1916203) 1 NC_010001.1 PFAM: DegV family protein; KEGG: dsy:DSY0636 hypothetical protein; DegV family protein 1916203 5744380 Cphy_1558 Clostridium phytofermentans ISDg DegV family protein YP_001558671.1 1915316 R 357809 CDS YP_001558672.1 160879704 5744381 1916737..1917444 1 NC_010001.1 hypothetical protein 1917444 5744381 Cphy_1559 Clostridium phytofermentans ISDg hypothetical protein YP_001558672.1 1916737 D 357809 CDS YP_001558673.1 160879705 5744382 1917456..1918169 1 NC_010001.1 KEGG: spj:MGAS2096_Spy1119 hypothetical protein; hypothetical protein 1918169 5744382 Cphy_1560 Clostridium phytofermentans ISDg hypothetical protein YP_001558673.1 1917456 D 357809 CDS YP_001558674.1 160879706 5744383 complement(1918294..1918998) 1 NC_010001.1 PFAM: regulatory protein GntR HTH; KEGG: chy:CHY_0434 transcriptional regulator, GntR family; regulatory protein GntR HTH 1918998 5744383 Cphy_1561 Clostridium phytofermentans ISDg regulatory protein GntR HTH YP_001558674.1 1918294 R 357809 CDS YP_001558675.1 160879707 5744384 1919275..1920270 1 NC_010001.1 KEGG: cbf:CLI_0519 hypothetical protein; hypothetical protein 1920270 5744384 Cphy_1562 Clostridium phytofermentans ISDg hypothetical protein YP_001558675.1 1919275 D 357809 CDS YP_001558676.1 160879708 5744385 1920371..1921045 1 NC_010001.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: cbh:CLC_0506 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 1921045 5744385 Cphy_1563 Clostridium phytofermentans ISDg hydrogenase nickel incorporation protein HypB YP_001558676.1 1920371 D 357809 CDS YP_001558677.1 160879709 5744386 1921125..1923800 1 NC_010001.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbo:CBO0432 pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin 1923800 5744386 Cphy_1564 Clostridium phytofermentans ISDg 4Fe-4S ferredoxin YP_001558677.1 1921125 D 357809 CDS YP_001558678.1 160879710 5744387 1923808..1924149 1 NC_010001.1 PFAM: hydrogenase expression/synthesis HypA; KEGG: cbf:CLI_0518 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA 1924149 5744387 Cphy_1565 Clostridium phytofermentans ISDg hydrogenase nickel incorporation protein HypA YP_001558678.1 1923808 D 357809 CDS YP_001558679.1 160879711 5744388 complement(1924529..1926922) 1 NC_010001.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cdf:CD1659 probable cation-transporting ATPase; P-type HAD superfamily ATPase 1926922 5744388 Cphy_1566 Clostridium phytofermentans ISDg P-type HAD superfamily ATPase YP_001558679.1 1924529 R 357809 CDS YP_001558680.1 160879712 5744389 complement(1927344..1928687) 1 NC_010001.1 KEGG: cno:NT01CX_2046 hypothetical protein; hypothetical protein 1928687 5744389 Cphy_1567 Clostridium phytofermentans ISDg hypothetical protein YP_001558680.1 1927344 R 357809 CDS YP_001558681.1 160879713 5744390 1928946..1929713 1 NC_010001.1 PFAM: protein of unknown function DUF328; KEGG: ppe:PEPE_1842 hypothetical protein; hypothetical protein 1929713 5744390 Cphy_1568 Clostridium phytofermentans ISDg hypothetical protein YP_001558681.1 1928946 D 357809 CDS YP_001558682.1 160879714 5744391 1929694..1930146 1 NC_010001.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cdf:CD1822 thiol peroxidase (bacterioferritin comigratory protein); alkyl hydroperoxide reductase 1930146 5744391 Cphy_1569 Clostridium phytofermentans ISDg alkyl hydroperoxide reductase YP_001558682.1 1929694 D 357809 CDS YP_001558683.1 160879715 5744392 complement(1930359..1930871) 1 NC_010001.1 PFAM: Ferritin Dps family protein; KEGG: dsy:DSY1172 hypothetical protein; ferritin Dps family protein 1930871 5744392 Cphy_1570 Clostridium phytofermentans ISDg ferritin Dps family protein YP_001558683.1 1930359 R 357809 CDS YP_001558684.1 160879716 5744393 1931101..1932780 1 NC_010001.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cac:CAC3245 subtilisin like protease (two fused domains); peptidase S8/S53 subtilisin kexin sedolisin 1932780 5744393 Cphy_1571 Clostridium phytofermentans ISDg peptidase S8/S53 subtilisin kexin sedolisin YP_001558684.1 1931101 D 357809 CDS YP_001558685.1 160879717 5744394 1932859..1934538 1 NC_010001.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpf:CPF_2368 subtilase family protein; peptidase S8/S53 subtilisin kexin sedolisin 1934538 5744394 Cphy_1572 Clostridium phytofermentans ISDg peptidase S8/S53 subtilisin kexin sedolisin YP_001558685.1 1932859 D 357809 CDS YP_001558686.1 160879718 5744395 1934628..1936307 1 NC_010001.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: ctc:CTC02345 serine-type protease; peptidase S8/S53 subtilisin kexin sedolisin 1936307 5744395 Cphy_1573 Clostridium phytofermentans ISDg peptidase S8/S53 subtilisin kexin sedolisin YP_001558686.1 1934628 D 357809 CDS YP_001558687.1 160879719 5744396 1936556..1938238 1 NC_010001.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: ctc:CTC02345 serine-type protease; peptidase S8/S53 subtilisin kexin sedolisin 1938238 5744396 Cphy_1574 Clostridium phytofermentans ISDg peptidase S8/S53 subtilisin kexin sedolisin YP_001558687.1 1936556 D 357809 CDS YP_001558688.1 160879720 5744397 1938361..1940046 1 NC_010001.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpe:CPE2561 probable Ser-type protease; peptidase S8/S53 subtilisin kexin sedolisin 1940046 5744397 Cphy_1575 Clostridium phytofermentans ISDg peptidase S8/S53 subtilisin kexin sedolisin YP_001558688.1 1938361 D 357809 CDS YP_001558689.1 160879721 5744398 1940148..1941827 1 NC_010001.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpr:CPR_2070 subtilase family protein; peptidase S8/S53 subtilisin kexin sedolisin 1941827 5744398 Cphy_1576 Clostridium phytofermentans ISDg peptidase S8/S53 subtilisin kexin sedolisin YP_001558689.1 1940148 D 357809 CDS YP_001558690.1 160879722 5744399 1941975..1942256 1 NC_010001.1 hypothetical protein 1942256 5744399 Cphy_1577 Clostridium phytofermentans ISDg hypothetical protein YP_001558690.1 1941975 D 357809 CDS YP_001558691.1 160879723 5744400 1942457..1943335 1 NC_010001.1 PFAM: ROK family protein; KEGG: gka:GK3204 fructokinase; ROK family protein 1943335 5744400 Cphy_1578 Clostridium phytofermentans ISDg ROK family protein YP_001558691.1 1942457 D 357809 CDS YP_001558692.1 160879724 5744401 1943545..1944048 1 NC_010001.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cdf:CD1558 RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 factor 1944048 5744401 Cphy_1579 Clostridium phytofermentans ISDg ECF subfamily RNA polymerase sigma-24 factor YP_001558692.1 1943545 D 357809 CDS YP_001558693.1 160879725 5744402 1944041..1944952 1 NC_010001.1 KEGG: lbu:LBUL_1746 hypothetical protein; hypothetical protein 1944952 5744402 Cphy_1580 Clostridium phytofermentans ISDg hypothetical protein YP_001558693.1 1944041 D 357809 CDS YP_001558694.1 160879726 5744403 1945393..1946445 1 NC_010001.1 KEGG: tte:TTE0286 periplasmic sugar-binding proteins; ABC-type sugar transport system periplasmic component-like protein 1946445 5744403 Cphy_1581 Clostridium phytofermentans ISDg ABC-type sugar transport system periplasmic component-like protein YP_001558694.1 1945393 D 357809 CDS YP_001558695.1 160879727 5744404 1946429..1947925 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: tte:TTE0287 predicted ATPase; signal transduction histidine kinase LytS 1947925 5744404 Cphy_1582 Clostridium phytofermentans ISDg signal transduction histidine kinase LytS YP_001558695.1 1946429 D 357809 CDS YP_001558696.1 160879728 5744405 1947918..1949519 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: tte:TTE0288 CheY-like receiver domains; two component AraC family transcriptional regulator 1949519 5744405 Cphy_1583 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001558696.1 1947918 D 357809 CDS YP_001558697.1 160879729 5744406 1949516..1950559 1 NC_010001.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0289 Periplasmic sugar-binding proteins; periplasmic binding protein/LacI transcriptional regulator 1950559 5744406 Cphy_1584 Clostridium phytofermentans ISDg periplasmic binding protein/LacI transcriptional regulator YP_001558697.1 1949516 D 357809 CDS YP_001558698.1 160879730 5744407 1950754..1951821 1 NC_010001.1 KEGG: amt:Amet_3799 solute-binding component of ABC transporter; solute-binding component of ABC transporter 1951821 5744407 Cphy_1585 Clostridium phytofermentans ISDg solute-binding component of ABC transporter YP_001558698.1 1950754 D 357809 CDS YP_001558699.1 160879731 5744408 1951989..1953530 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gtn:GTNG_1800 L-arabinose transport, ATP binding protein; ABC transporter 1953530 5744408 Cphy_1586 Clostridium phytofermentans ISDg ABC transporter YP_001558699.1 1951989 D 357809 CDS YP_001558700.1 160879732 5744409 1953534..1954712 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: amt:Amet_3797 monosaccharide-transporting ATPase; monosaccharide-transporting ATPase 1954712 5744409 Cphy_1587 Clostridium phytofermentans ISDg monosaccharide-transporting ATPase YP_001558700.1 1953534 D 357809 CDS YP_001558701.1 160879733 5744410 1954999..1956150 1 NC_010001.1 PFAM: SEC-C motif domain protein; KEGG: oih:OB1032 hypothetical protein; SecC motif-containing protein 1956150 5744410 Cphy_1588 Clostridium phytofermentans ISDg SecC motif-containing protein YP_001558701.1 1954999 D 357809 CDS YP_001558702.1 160879734 5744411 1956776..1957882 1 NC_010001.1 KEGG: bce:BC0396 hypothetical protein; hypothetical protein 1957882 5744411 Cphy_1589 Clostridium phytofermentans ISDg hypothetical protein YP_001558702.1 1956776 D 357809 CDS YP_001558703.1 160879735 5744412 1958047..1959417 1 NC_010001.1 KEGG: bcy:Bcer98_0514 helix-turn-helix domain protein; XRE family transcriptional regulator 1959417 5744412 Cphy_1590 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001558703.1 1958047 D 357809 CDS YP_001558704.1 160879736 5744413 1959583..1960827 1 NC_010001.1 PFAM: major facilitator superfamily MFS_1; KEGG: tme:Tmel_0369 major facilitator superfamily MFS_1; major facilitator transporter 1960827 5744413 Cphy_1591 Clostridium phytofermentans ISDg major facilitator transporter YP_001558704.1 1959583 D 357809 CDS YP_001558705.1 160879737 5744414 1961088..1962812 1 NC_010001.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen 1962812 5744414 Cphy_1592 Clostridium phytofermentans ISDg myosin-cross-reactive antigen YP_001558705.1 1961088 D 357809 CDS YP_001558706.1 160879738 5744415 complement(1963131..1964513) 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cpf:CPF_1409 MATE efflux family protein; MATE efflux family protein 1964513 5744415 Cphy_1593 Clostridium phytofermentans ISDg MATE efflux family protein YP_001558706.1 1963131 R 357809 CDS YP_001558707.1 160879739 5744416 1964825..1965385 1 NC_010001.1 KEGG: pth:PTH_0265 hypothetical membrane protein; hypothetical protein 1965385 5744416 Cphy_1594 Clostridium phytofermentans ISDg hypothetical protein YP_001558707.1 1964825 D 357809 CDS YP_001558708.1 160879740 5744417 1965566..1966474 1 NC_010001.1 hypothetical protein 1966474 5744417 Cphy_1595 Clostridium phytofermentans ISDg hypothetical protein YP_001558708.1 1965566 D 357809 CDS YP_001558709.1 160879741 5744418 1966899..1969457 1 NC_010001.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: pin:Ping_2107 glycoside hydrolase, family 3 domain protein; glycoside hydrolase family 3 1969457 5744418 Cphy_1596 Clostridium phytofermentans ISDg glycoside hydrolase family 3 YP_001558709.1 1966899 D 357809 CDS YP_001558710.1 160879742 5744419 1969774..1970778 1 NC_010001.1 NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; 2,3-diketo-L-gulonate reductase 1970778 5744419 Cphy_1597 Clostridium phytofermentans ISDg 2,3-diketo-L-gulonate reductase YP_001558710.1 1969774 D 357809 CDS YP_001558711.1 160879743 5744420 1971446..1972876 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC3007 ATPase component of MDR-type ABC transporter, two ATPase domains; ABC transporter 1972876 5744420 Cphy_1598 Clostridium phytofermentans ISDg ABC transporter YP_001558711.1 1971446 D 357809 CDS YP_001558712.1 160879744 5744421 1973255..1974241 1 NC_010001.1 KEGG: tva:TVAG_216960 viral A-type inclusion protein, Pfam: NHR2 Rab5-bind BRE1 FlaC_arch Prefoldin_2 Laminin_I M EzrA IL6 DUF827 Syntaxin Erp_C HrpB7 DUF904 DUF1978 DUF972 Osmo_CC K-box bZIP_2 Fez1 Vicilin_N Apolipoprotein Spectrin Myosin_tail_1 Phage_GP20 Filament MAP65_ASE1 Tropomyosin Tup_N PspA_IM30 MAP7 PROSITE: GLU_RICH LYS_RICH GAT; hypothetical protein 1974241 5744421 Cphy_1599 Clostridium phytofermentans ISDg hypothetical protein YP_001558712.1 1973255 D 357809 CDS YP_001558713.1 160879745 5744422 1974864..1975601 1 NC_010001.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: cpr:CPR_0486 DNA-binding response regulator; LytTR family two component transcriptional regulator 1975601 5744422 Cphy_1600 Clostridium phytofermentans ISDg LytTR family two component transcriptional regulator YP_001558713.1 1974864 D 357809 CDS YP_001558714.1 160879746 5744423 1975622..1976962 1 NC_010001.1 KEGG: cpr:CPR_0487 sensor histidine kinase; signal transduction histidine kinase regulating citrate/malate metabolism 1976962 5744423 Cphy_1601 Clostridium phytofermentans ISDg signal transduction histidine kinase regulating citrate/malate metabolism YP_001558714.1 1975622 D 357809 CDS YP_001558715.1 160879747 5744424 complement(1977172..1978428) 1 NC_010001.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ckl:CKL_1537 hypothetical protein; PAS/PAC sensor-containing diguanylate cyclase 1978428 5744424 Cphy_1602 Clostridium phytofermentans ISDg PAS/PAC sensor-containing diguanylate cyclase YP_001558715.1 1977172 R 357809 CDS YP_001558716.1 160879748 5744425 complement(1978474..1978995) 1 NC_010001.1 PFAM: 4-vinyl reductase 4VR; KEGG: gur:Gura_0328 4-vinyl reductase, 4VR; 4-vinyl reductase 4VR 1978995 5744425 Cphy_1603 Clostridium phytofermentans ISDg 4-vinyl reductase 4VR YP_001558716.1 1978474 R 357809 CDS YP_001558717.1 160879749 5744426 1979453..1979737 1 NC_010001.1 PFAM: regulatory protein LuxR; KEGG: cps:CPS_1932 DNA-binding response regulator; LuxR family transcriptional regulator 1979737 5744426 Cphy_1604 Clostridium phytofermentans ISDg LuxR family transcriptional regulator YP_001558717.1 1979453 D 357809 CDS YP_001558718.1 160879750 5744427 1979970..1980269 1 NC_010001.1 KEGG: mba:Mbar_A0863 hypothetical protein; hypothetical protein 1980269 5744427 Cphy_1605 Clostridium phytofermentans ISDg hypothetical protein YP_001558718.1 1979970 D 357809 CDS YP_001558719.1 160879751 5744428 1980311..1980604 1 NC_010001.1 hypothetical protein 1980604 5744428 Cphy_1606 Clostridium phytofermentans ISDg hypothetical protein YP_001558719.1 1980311 D 357809 CDS YP_001558720.1 160879752 5744429 complement(1980672..1981040) 1 NC_010001.1 KEGG: cdf:CD0634 hypothetical protein; hypothetical protein 1981040 5744429 Cphy_1607 Clostridium phytofermentans ISDg hypothetical protein YP_001558720.1 1980672 R 357809 CDS YP_001558721.1 160879753 5744430 1981367..1981924 1 NC_010001.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: amt:Amet_1400 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 1981924 5744430 Cphy_1608 Clostridium phytofermentans ISDg CDP-alcohol phosphatidyltransferase YP_001558721.1 1981367 D 357809 CDS YP_001558722.1 160879754 5744431 complement(1982218..1983036) 1 NC_010001.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: cdf:CD1516 MerR-family transcriptional activator; MerR family transcriptional regulator 1983036 5744431 Cphy_1609 Clostridium phytofermentans ISDg MerR family transcriptional regulator YP_001558722.1 1982218 R 357809 CDS YP_001558723.1 160879755 5744432 1983350..1983982 1 NC_010001.1 PFAM: protein of unknown function DUF161; KEGG: cdf:CD1590 hypothetical protein; hypothetical protein 1983982 5744432 Cphy_1610 Clostridium phytofermentans ISDg hypothetical protein YP_001558723.1 1983350 D 357809 CDS YP_001558724.1 160879756 5744433 1984075..1985223 1 NC_010001.1 KEGG: cpf:CPF_1146 hypothetical protein; hypothetical protein 1985223 5744433 Cphy_1611 Clostridium phytofermentans ISDg hypothetical protein YP_001558724.1 1984075 D 357809 CDS YP_001558725.1 160879757 5744434 1985551..1989780 1 NC_010001.1 PFAM: Pectate lyase/Amb allergen; KEGG: cac:CAC0804 pectate lyase related protein, secreted; Pectate lyase/Amb allergen 1989780 5744434 Cphy_1612 Clostridium phytofermentans ISDg Pectate lyase/Amb allergen YP_001558725.1 1985551 D 357809 CDS YP_001558726.1 160879758 5744435 1990158..1990991 1 NC_010001.1 PFAM: regulatory protein MerR; KEGG: amt:Amet_0478 transcriptional regulator, MerR family; MerR family transcriptional regulator 1990991 5744435 Cphy_1613 Clostridium phytofermentans ISDg MerR family transcriptional regulator YP_001558726.1 1990158 D 357809 CDS YP_001558727.1 160879759 5744436 1991341..1991967 1 NC_010001.1 PFAM: glycosyl transferase family 51; KEGG: bpu:BPUM_0957 penicillin-binding protein 2C; glycosyl transferase family protein 1991967 5744436 Cphy_1614 Clostridium phytofermentans ISDg glycosyl transferase family protein YP_001558727.1 1991341 D 357809 CDS YP_001558728.1 160879760 5744438 1994587..1994985 1 NC_010001.1 PFAM: NUDIX hydrolase; KEGG: msi:Msm_0691 mutator MutT protein (NUDIX domain); NUDIX hydrolase 1994985 5744438 Cphy_1617 Clostridium phytofermentans ISDg NUDIX hydrolase YP_001558728.1 1994587 D 357809 CDS YP_001558729.1 160879761 5744439 1995126..1997270 1 NC_010001.1 KEGG: mgr:MGG_03407 hypothetical protein Pfam: Glyco_hydro_67N; hypothetical protein 1997270 5744439 Cphy_1618 Clostridium phytofermentans ISDg hypothetical protein YP_001558729.1 1995126 D 357809 CDS YP_001558730.1 160879762 5744440 complement(1997583..1997972) 1 NC_010001.1 hypothetical protein 1997972 5744440 Cphy_1619 Clostridium phytofermentans ISDg hypothetical protein YP_001558730.1 1997583 R 357809 CDS YP_001558731.1 160879763 5744441 1998403..1999086 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ckl:CKL_3005 predicted transcriptional regulator; two component transcriptional regulator 1999086 5744441 Cphy_1620 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001558731.1 1998403 D 357809 CDS YP_001558732.1 160879764 5744442 1999092..2000402 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ckl:CKL_3004 predicted sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2000402 5744442 Cphy_1621 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001558732.1 1999092 D 357809 CDS YP_001558733.1 160879765 5744443 2000607..2000990 1 NC_010001.1 hypothetical protein 2000990 5744443 Cphy_1622 Clostridium phytofermentans ISDg hypothetical protein YP_001558733.1 2000607 D 357809 CDS YP_001558734.1 160879766 5744444 2001079..2002623 1 NC_010001.1 PFAM: protein of unknown function DUF214; KEGG: amt:Amet_4745 protein of unknown function DUF214; hypothetical protein 2002623 5744444 Cphy_1623 Clostridium phytofermentans ISDg hypothetical protein YP_001558734.1 2001079 D 357809 CDS YP_001558735.1 160879767 5744445 2002633..2003304 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4744 ABC transporter related; ABC transporter 2003304 5744445 Cphy_1624 Clostridium phytofermentans ISDg ABC transporter YP_001558735.1 2002633 D 357809 CDS YP_001558736.1 160879768 5744446 complement(2003438..2004127) 1 NC_010001.1 PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; KEGG: btk:BT9727_2276 methyltransferase; methyltransferase type 12 2004127 5744446 Cphy_1625 Clostridium phytofermentans ISDg methyltransferase type 12 YP_001558736.1 2003438 R 357809 CDS YP_001558737.1 160879769 5744447 2004412..2005554 1 NC_010001.1 PFAM: acyl-protein synthetase LuxE; KEGG: plu:plu4181 hypothetical protein; acyl-protein synthetase LuxE 2005554 5744447 Cphy_1626 Clostridium phytofermentans ISDg acyl-protein synthetase LuxE YP_001558737.1 2004412 D 357809 CDS YP_001558738.1 160879770 5744448 2005551..2006798 1 NC_010001.1 PFAM: acyl-CoA reductase; KEGG: pen:PSEEN0622 hypothetical protein; acyl-CoA reductase 2006798 5744448 Cphy_1627 Clostridium phytofermentans ISDg acyl-CoA reductase YP_001558738.1 2005551 D 357809 CDS YP_001558739.1 160879771 5744449 2006810..2007739 1 NC_010001.1 hypothetical protein 2007739 5744449 Cphy_1628 Clostridium phytofermentans ISDg hypothetical protein YP_001558739.1 2006810 D 357809 CDS YP_001558740.1 160879772 5744450 complement(2007830..2008420) 1 NC_010001.1 hypothetical protein 2008420 5744450 Cphy_1629 Clostridium phytofermentans ISDg hypothetical protein YP_001558740.1 2007830 R 357809 CDS YP_001558741.1 160879773 5744451 complement(2008475..2009668) 1 NC_010001.1 PFAM: aldo/keto reductase; KEGG: cbe:Cbei_2676 aldo/keto reductase; aldo/keto reductase 2009668 5744451 Cphy_1630 Clostridium phytofermentans ISDg aldo/keto reductase YP_001558741.1 2008475 R 357809 CDS YP_001558742.1 160879774 5744452 2009889..2010590 1 NC_010001.1 PFAM: protein of unknown function DUF1037; KEGG: bcl:ABC1573 trehalose utilization protein; hypothetical protein 2010590 5744452 Cphy_1631 Clostridium phytofermentans ISDg hypothetical protein YP_001558742.1 2009889 D 357809 CDS YP_001558743.1 160879775 5744453 2010991..2013102 1 NC_010001.1 KEGG: ctc:CTC02460 ATP-dependent DNA helicase rep; ATP-dependent DNA helicase rep 2013102 5744453 Cphy_1632 Clostridium phytofermentans ISDg ATP-dependent DNA helicase rep YP_001558743.1 2010991 D 357809 CDS YP_001558744.1 160879776 5744454 2013355..2013987 1 NC_010001.1 PFAM: regulatory protein TetR; KEGG: ckl:CKL_0067 hypothetical protein; TetR family transcriptional regulator 2013987 5744454 Cphy_1633 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001558744.1 2013355 D 357809 CDS YP_001558745.1 160879777 5744455 2013974..2014867 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bld:BLi00349 ABC-2 type transport system ATP-binding protein; ABC transporter 2014867 5744455 Cphy_1634 Clostridium phytofermentans ISDg ABC transporter YP_001558745.1 2013974 D 357809 CDS YP_001558746.1 160879778 5744456 2014860..2015660 1 NC_010001.1 KEGG: bca:BCE_1989 membrane protein; hypothetical protein 2015660 5744456 Cphy_1635 Clostridium phytofermentans ISDg hypothetical protein YP_001558746.1 2014860 D 357809 CDS YP_001558747.1 160879779 5744457 2016021..2017391 1 NC_010001.1 PFAM: chemotaxis sensory transducer; KEGG: mag:amb3192 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2017391 5744457 Cphy_1636 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001558747.1 2016021 D 357809 CDS YP_001558748.1 160879780 5744458 complement(2017524..2018096) 1 NC_010001.1 PFAM: protein of unknown function DUF204; KEGG: cju:C8J_0163 integral membrane protein; hypothetical protein 2018096 5744458 Cphy_1637 Clostridium phytofermentans ISDg hypothetical protein YP_001558748.1 2017524 R 357809 CDS YP_001558749.1 160879781 5744459 2018690..2018911 1 NC_010001.1 hypothetical protein 2018911 5744459 Cphy_1638 Clostridium phytofermentans ISDg hypothetical protein YP_001558749.1 2018690 D 357809 CDS YP_001558750.1 160879782 5744460 complement(2019044..2020744) 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY3742 hypothetical protein; methyl-accepting chemotaxis sensory transducer 2020744 5744460 Cphy_1639 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001558750.1 2019044 R 357809 CDS YP_001558751.1 160879783 5744461 2021389..2022114 1 NC_010001.1 PFAM: glycoside hydrolase family 12; KEGG: sma:SAV2571 hypothetical protein; hypothetical protein 2022114 5744461 Cphy_1640 Clostridium phytofermentans ISDg hypothetical protein YP_001558751.1 2021389 D 357809 CDS YP_001558752.1 160879784 5744462 2023075..2023380 1 NC_010001.1 KEGG: afw:Anae109_3838 metallophosphoesterase; metallophosphoesterase 2023380 5744462 Cphy_1641 Clostridium phytofermentans ISDg metallophosphoesterase YP_001558752.1 2023075 D 357809 CDS YP_001558753.1 160879785 5744463 2023528..2024505 1 NC_010001.1 KEGG: ani:AN4890.2 hypothetical protein; hypothetical protein 2024505 5744463 Cphy_1642 Clostridium phytofermentans ISDg hypothetical protein YP_001558753.1 2023528 D 357809 CDS YP_001558754.1 160879786 5744464 complement(2024682..2025863) 1 NC_010001.1 KEGG: tte:TTE0723 Lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; lysine 2,3-aminomutase YodO family protein 2025863 5744464 Cphy_1643 Clostridium phytofermentans ISDg lysine 2,3-aminomutase YodO family protein YP_001558754.1 2024682 R 357809 CDS YP_001558755.1 160879787 5744465 complement(2025880..2026923) 1 NC_010001.1 PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; KEGG: mxa:MXAN_4097 D-alanine-D-alanine ligase family protein; D-alanine--D-alanine ligase 2026923 5744465 Cphy_1644 Clostridium phytofermentans ISDg D-alanine--D-alanine ligase YP_001558755.1 2025880 R 357809 CDS YP_001558756.1 160879788 5744466 2027497..2028747 1 NC_010001.1 KEGG: cdf:CD3350 glycosyl transferase; hypothetical protein 2028747 5744466 Cphy_1645 Clostridium phytofermentans ISDg hypothetical protein YP_001558756.1 2027497 D 357809 CDS YP_001558757.1 160879789 5744467 complement(2029101..2029397) 1 NC_010001.1 KEGG: ppu:PP_1193 hypothetical protein; hypothetical protein 2029397 5744467 Cphy_1646 Clostridium phytofermentans ISDg hypothetical protein YP_001558757.1 2029101 R 357809 CDS YP_001558758.1 160879790 5744468 2029651..2030550 1 NC_010001.1 PFAM: protein of unknown function UPF0074; regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: cac:CAC3494 transcription regulator, YOBV B.subtilis homolog; helix-turn-helix type 11 domain-containing protein 2030550 5744468 Cphy_1647 Clostridium phytofermentans ISDg helix-turn-helix type 11 domain-containing protein YP_001558758.1 2029651 D 357809 CDS YP_001558759.1 160879791 5744469 2030764..2031045 1 NC_010001.1 PFAM: Domain of unknown function DUF1905; KEGG: dsy:DSY1231 hypothetical protein; hypothetical protein 2031045 5744469 Cphy_1648 Clostridium phytofermentans ISDg hypothetical protein YP_001558759.1 2030764 D 357809 CDS YP_001558760.1 160879792 5744470 2031152..2031319 1 NC_010001.1 KEGG: cbe:Cbei_4140 hypothetical protein; hypothetical protein 2031319 5744470 Cphy_1649 Clostridium phytofermentans ISDg hypothetical protein YP_001558760.1 2031152 D 357809 CDS YP_001558761.1 160879793 5744471 2031316..2032047 1 NC_010001.1 KEGG: cbf:CLI_1187 HD domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 2032047 5744471 Cphy_1650 Clostridium phytofermentans ISDg metal dependent phosphohydrolase YP_001558761.1 2031316 D 357809 CDS YP_001558762.1 160879794 5744472 2032316..2033584 1 NC_010001.1 PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_0838 major facilitator family transporter; major facilitator transporter 2033584 5744472 Cphy_1651 Clostridium phytofermentans ISDg major facilitator transporter YP_001558762.1 2032316 D 357809 CDS YP_001558763.1 160879795 5744473 2033850..2035121 1 NC_010001.1 PFAM: glycoside hydrolase family 18; Peptidoglycan-binding LysM; SMART: chitinase II; KEGG: cno:NT01CX_1510 spore peptidogylcan hydrolase; peptidoglycan-binding LysM 2035121 5744473 Cphy_1652 Clostridium phytofermentans ISDg peptidoglycan-binding LysM YP_001558763.1 2033850 D 357809 CDS YP_001558764.1 160879796 5744474 2035516..2035947 1 NC_010001.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: ctc:CTC02359 hemerythrin-like domain protein DcrH; hemerythrin-like metal-binding protein 2035947 5744474 Cphy_1653 Clostridium phytofermentans ISDg hemerythrin-like metal-binding protein YP_001558764.1 2035516 D 357809 CDS YP_001558765.1 160879797 5744475 2036308..2037972 1 NC_010001.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: protein of unknown function Met10; conserved hypothetical protein; (Uracil-5)-methyltransferase; KEGG: cth:Cthe_1751 RNA methyltransferase, TrmA family; RNA methyltransferase 2037972 5744475 Cphy_1654 Clostridium phytofermentans ISDg RNA methyltransferase YP_001558765.1 2036308 D 357809 CDS YP_001558766.1 160879798 5744476 2038041..2038259 1 NC_010001.1 KEGG: ckl:CKL_0533 hypothetical protein; hypothetical protein 2038259 5744476 Cphy_1655 Clostridium phytofermentans ISDg hypothetical protein YP_001558766.1 2038041 D 357809 CDS YP_001558767.1 160879799 5744477 2038430..2039125 1 NC_010001.1 PFAM: DSBA oxidoreductase; KEGG: efa:EF1088 hypothetical protein; DSBA oxidoreductase 2039125 5744477 Cphy_1656 Clostridium phytofermentans ISDg DSBA oxidoreductase YP_001558767.1 2038430 D 357809 CDS YP_001558768.1 160879800 5744478 2039427..2040191 1 NC_010001.1 KEGG: bth:BT_2376 hypothetical protein; hypothetical protein 2040191 5744478 Cphy_1657 Clostridium phytofermentans ISDg hypothetical protein YP_001558768.1 2039427 D 357809 CDS YP_001558769.1 160879801 5744479 2040473..2041585 1 NC_010001.1 PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pth:PTH_2686 predicted oxidoreductases; aldo/keto reductase 2041585 5744479 Cphy_1658 Clostridium phytofermentans ISDg aldo/keto reductase YP_001558769.1 2040473 D 357809 CDS YP_001558770.1 160879802 5744480 2041739..2042551 1 NC_010001.1 PFAM: alpha/beta hydrolase fold; KEGG: cbf:CLI_0921 non-haem haloperoxidase family protein; alpha/beta hydrolase 2042551 5744480 Cphy_1659 Clostridium phytofermentans ISDg alpha/beta hydrolase YP_001558770.1 2041739 D 357809 CDS YP_001558771.1 160879803 5744481 2042568..2043632 1 NC_010001.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cbe:Cbei_3316 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 2043632 5744481 Cphy_1660 Clostridium phytofermentans ISDg NADH:flavin oxidoreductase YP_001558771.1 2042568 D 357809 CDS YP_001558772.1 160879804 5741492 complement(2043831..2044175) 1 NC_010001.1 PFAM: helix-turn-helix HxlR type; KEGG: cbe:Cbei_3137 transcriptional regulator, HxlR family; HxlR family transcriptional regulator 2044175 5741492 Cphy_1661 Clostridium phytofermentans ISDg HxlR family transcriptional regulator YP_001558772.1 2043831 R 357809 CDS YP_001558773.1 160879805 5741493 2044365..2044691 1 NC_010001.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3138 cupin 2, conserved barrel domain protein; cupin 2044691 5741493 Cphy_1662 Clostridium phytofermentans ISDg cupin YP_001558773.1 2044365 D 357809 CDS YP_001558774.1 160879806 5741494 2044731..2045111 1 NC_010001.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bld:BLi04061 YwbC; glyoxalase/bleomycin resistance protein/dioxygenase 2045111 5741494 Cphy_1663 Clostridium phytofermentans ISDg glyoxalase/bleomycin resistance protein/dioxygenase YP_001558774.1 2044731 D 357809 CDS YP_001558775.1 160879807 5741495 2045639..2045971 1 NC_010001.1 hypothetical protein 2045971 5741495 Cphy_1664 Clostridium phytofermentans ISDg hypothetical protein YP_001558775.1 2045639 D 357809 CDS YP_001558776.1 160879808 5741496 2045989..2046309 1 NC_010001.1 KEGG: dvl:Dvul_2626 hypothetical protein; hypothetical protein 2046309 5741496 Cphy_1665 Clostridium phytofermentans ISDg hypothetical protein YP_001558776.1 2045989 D 357809 CDS YP_001558777.1 160879809 5741497 2046953..2047750 1 NC_010001.1 KEGG: chy:CHY_2116 phosphate ABC transporter, ATP-binding protein PstB; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase 2047750 5741497 Cphy_1666 Clostridium phytofermentans ISDg phosphate ABC transporter ATPase YP_001558777.1 2046953 D 357809 CDS YP_001558778.1 160879810 5741498 2047894..2048733 1 NC_010001.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_1610 phosphate binding protein; phosphate binding protein 2048733 5741498 Cphy_1667 Clostridium phytofermentans ISDg phosphate binding protein YP_001558778.1 2047894 D 357809 CDS YP_001558779.1 160879811 5741499 2048730..2049575 1 NC_010001.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_1611 phosphate ABC transporter, inner membrane subunit PstC; phosphate ABC transporter, inner membrane subunit PstC 2049575 5741499 Cphy_1668 Clostridium phytofermentans ISDg phosphate ABC transporter, inner membrane subunit PstC YP_001558779.1 2048730 D 357809 CDS YP_001558780.1 160879812 5741500 2049583..2050419 1 NC_010001.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_1612 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter, inner membrane subunit PstA 2050419 5741500 Cphy_1669 Clostridium phytofermentans ISDg phosphate ABC transporter, inner membrane subunit PstA YP_001558780.1 2049583 D 357809 CDS YP_001558781.1 160879813 5741501 2050430..2051191 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: deb:DehaBAV1_0229 phosphate ABC transporter, ATPase subunit; ABC transporter 2051191 5741501 Cphy_1670 Clostridium phytofermentans ISDg ABC transporter YP_001558781.1 2050430 D 357809 CDS YP_001558782.1 160879814 5741502 2051237..2051890 1 NC_010001.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: amt:Amet_4620 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU 2051890 5741502 Cphy_1671 Clostridium phytofermentans ISDg phosphate uptake regulator PhoU YP_001558782.1 2051237 D 357809 CDS YP_001558783.1 160879815 5741503 complement(2052087..2052590) 1 NC_010001.1 PFAM: protein of unknown function DUF985; KEGG: cbf:CLI_0821 hypothetical protein; hypothetical protein 2052590 5741503 Cphy_1672 Clostridium phytofermentans ISDg hypothetical protein YP_001558783.1 2052087 R 357809 CDS YP_001558784.1 160879816 5741504 complement(2052787..2053758) 1 NC_010001.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: cbf:CLI_3343 GIY-YIG domain protein; excinuclease ABC subunit C 2053758 5741504 Cphy_1673 Clostridium phytofermentans ISDg excinuclease ABC subunit C YP_001558784.1 2052787 R 357809 CDS YP_001558785.1 160879817 5741505 complement(2054043..2055077) 1 NC_010001.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tde:TDE2369 hypothetical protein; redoxin domain-containing protein 2055077 5741505 Cphy_1674 Clostridium phytofermentans ISDg redoxin domain-containing protein YP_001558785.1 2054043 R 357809 CDS YP_001558786.1 160879818 5741506 complement(2055095..2055943) 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cdf:CD1872 iron-sulfur-binding membrane protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2055943 5741506 Cphy_1675 Clostridium phytofermentans ISDg 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_001558786.1 2055095 R 357809 CDS YP_001558787.1 160879819 5741507 2056682..2057341 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC1506 response regulator (CheY-like receiver domain and a HTH); two component transcriptional regulator 2057341 5741507 Cphy_1676 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001558787.1 2056682 D 357809 CDS YP_001558788.1 160879820 5741508 2057338..2058771 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cac:CAC1507 sensory transduction histidine kinase (with HAMP domain); integral membrane sensor signal transduction histidine kinase 2058771 5741508 Cphy_1677 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001558788.1 2057338 D 357809 CDS YP_001558789.1 160879821 5741509 2058755..2059531 1 NC_010001.1 hypothetical protein 2059531 5741509 Cphy_1678 Clostridium phytofermentans ISDg hypothetical protein YP_001558789.1 2058755 D 357809 CDS YP_001558790.1 160879822 5741510 2059856..2060530 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amt:Amet_1917 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2060530 5741510 Cphy_1679 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001558790.1 2059856 D 357809 CDS YP_001558791.1 160879823 5741511 2060527..2061597 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: amt:Amet_1918 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2061597 5741511 Cphy_1680 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001558791.1 2060527 D 357809 CDS YP_001558792.1 160879824 5741512 2061728..2063485 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1261 hypothetical protein; ABC transporter 2063485 5741512 Cphy_1681 Clostridium phytofermentans ISDg ABC transporter YP_001558792.1 2061728 D 357809 CDS YP_001558793.1 160879825 5741513 2063482..2065323 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1260 hypothetical protein; ABC transporter 2065323 5741513 Cphy_1682 Clostridium phytofermentans ISDg ABC transporter YP_001558793.1 2063482 D 357809 CDS YP_001558794.1 160879826 5741514 2065548..2066213 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: amt:Amet_1428 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 2066213 5741514 Cphy_1683 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001558794.1 2065548 D 357809 CDS YP_001558795.1 160879827 5741515 complement(2066377..2067711) 1 NC_010001.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: chu:CHU_1815 selenocysteine lyase; SufS subfamily cysteine desulfurase 2067711 5741515 Cphy_1684 Clostridium phytofermentans ISDg SufS subfamily cysteine desulfurase YP_001558795.1 2066377 R 357809 CDS YP_001558796.1 160879828 5741516 complement(2067701..2068645) 1 NC_010001.1 KEGG: chu:CHU_1814 hypothetical protein; hypothetical protein 2068645 5741516 Cphy_1685 Clostridium phytofermentans ISDg hypothetical protein YP_001558796.1 2067701 R 357809 CDS YP_001558797.1 160879829 5741517 complement(2068969..2070048) 1 NC_010001.1 KEGG: cbf:CLI_0723 hypothetical protein; hypothetical protein 2070048 5741517 Cphy_1686 Clostridium phytofermentans ISDg hypothetical protein YP_001558797.1 2068969 R 357809 CDS YP_001558798.1 160879830 5741518 2070592..2071602 1 NC_010001.1 PFAM: polysaccharide deacetylase; KEGG: sde:Sde_3061 xylanase/chitin deacetylase-like; polysaccharide deacetylase 2071602 5741518 Cphy_1687 Clostridium phytofermentans ISDg polysaccharide deacetylase YP_001558798.1 2070592 D 357809 CDS YP_001558799.1 160879831 5741519 2071762..2073555 1 NC_010001.1 PFAM: glycosyl hydrolase BNR repeat-containing protein; Two component regulator propeller; KEGG: sfu:Sfum_3494 hypothetical protein; two component regulator propeller domain-containing protein 2073555 5741519 Cphy_1688 Clostridium phytofermentans ISDg two component regulator propeller domain-containing protein YP_001558799.1 2071762 D 357809 CDS YP_001558800.1 160879832 5741520 2074008..2075246 1 NC_010001.1 PFAM: sodium/hydrogen exchanger; KEGG: cbh:CLC_2648 transporter, monovalent cation:proton antiporter-2 (CPA2) family; sodium/hydrogen exchanger 2075246 5741520 Cphy_1689 Clostridium phytofermentans ISDg sodium/hydrogen exchanger YP_001558800.1 2074008 D 357809 CDS YP_001558801.1 160879833 5741521 2075282..2075632 1 NC_010001.1 KEGG: cth:Cthe_1401 hypothetical protein; hypothetical protein 2075632 5741521 Cphy_1690 Clostridium phytofermentans ISDg hypothetical protein YP_001558801.1 2075282 D 357809 CDS YP_001558802.1 160879834 5741522 2075841..2076455 1 NC_010001.1 hypothetical protein 2076455 5741522 Cphy_1691 Clostridium phytofermentans ISDg hypothetical protein YP_001558802.1 2075841 D 357809 CDS YP_001558803.1 160879835 5741523 2076631..2076984 1 NC_010001.1 KEGG: cbh:CLC_0359 transcriptional regulator, AraC family; AraC family transcriptional regulator 2076984 5741523 Cphy_1692 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001558803.1 2076631 D 357809 CDS YP_001558804.1 160879836 5741524 2077186..2077641 1 NC_010001.1 hypothetical protein 2077641 5741524 Cphy_1693 Clostridium phytofermentans ISDg hypothetical protein YP_001558804.1 2077186 D 357809 CDS YP_001558805.1 160879837 5741525 complement(2078054..2081500) 1 NC_010001.1 PFAM: Collagen triple helix repeat; KEGG: mlo:mlr0587 hypothetical glycine-rich protein; triple helix repeat-containing collagen 2081500 5741525 Cphy_1694 Clostridium phytofermentans ISDg triple helix repeat-containing collagen YP_001558805.1 2078054 R 357809 CDS YP_001558806.1 160879838 5741526 complement(2081574..2082656) 1 NC_010001.1 PFAM: glycosyl transferase family 2; KEGG: cdf:CD3350 glycosyl transferase; glycosyl transferase family protein 2082656 5741526 Cphy_1695 Clostridium phytofermentans ISDg glycosyl transferase family protein YP_001558806.1 2081574 R 357809 CDS YP_001558807.1 160879839 5741527 2082909..2083400 1 NC_010001.1 PFAM: regulatory protein MarR; Penicillinase repressor; KEGG: amt:Amet_1479 transcriptional regulator, TrmB; MarR family transcriptional regulator 2083400 5741527 Cphy_1696 Clostridium phytofermentans ISDg MarR family transcriptional regulator YP_001558807.1 2082909 D 357809 CDS YP_001558808.1 160879840 5741528 2083585..2084766 1 NC_010001.1 KEGG: fnu:FN1538 arsenical pump-driving ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA 2084766 5741528 Cphy_1697 Clostridium phytofermentans ISDg arsenite-activated ATPase ArsA YP_001558808.1 2083585 D 357809 CDS YP_001558809.1 160879841 5741529 2084993..2086150 1 NC_010001.1 PFAM: Anion-transporting ATPase; KEGG: fnu:FN1537 arsenical pump-driving ATPase; arsenite-transporting ATPase 2086150 5741529 Cphy_1698 Clostridium phytofermentans ISDg arsenite-transporting ATPase YP_001558809.1 2084993 D 357809 CDS YP_001558810.1 160879842 5741530 2086195..2087451 1 NC_010001.1 PFAM: condensation domain protein; phosphopantetheine-binding; KEGG: bbt:BBta_1089 non-ribosomal peptide synthase; phosphopantetheine-binding protein 2087451 5741530 Cphy_1699 Clostridium phytofermentans ISDg phosphopantetheine-binding protein YP_001558810.1 2086195 D 357809 CDS YP_001558811.1 160879843 5741531 2087735..2087974 1 NC_010001.1 KEGG: cbh:CLC_0903 non-haem haloperoxidase family protein; non-heme haloperoxidase family protein 2087974 5741531 Cphy_1700 Clostridium phytofermentans ISDg non-heme haloperoxidase family protein YP_001558811.1 2087735 D 357809 CDS YP_001558812.1 160879844 5741532 complement(2088021..2088395) 1 NC_010001.1 KEGG: spe:Spro_2493 cysteine desulfurase, SufS subfamily; SufS subfamily cysteine desulfurase 2088395 5741532 Cphy_1701 Clostridium phytofermentans ISDg SufS subfamily cysteine desulfurase YP_001558812.1 2088021 R 357809 CDS YP_001558813.1 160879845 5741533 complement(2088404..2088520) 1 NC_010001.1 hypothetical protein 2088520 5741533 Cphy_1702 Clostridium phytofermentans ISDg hypothetical protein YP_001558813.1 2088404 R 357809 CDS YP_001558814.1 160879846 5741534 complement(2088779..2089852) 1 NC_010001.1 KEGG: cbf:CLI_0723 hypothetical protein; hypothetical protein 2089852 5741534 Cphy_1703 Clostridium phytofermentans ISDg hypothetical protein YP_001558814.1 2088779 R 357809 CDS YP_001558815.1 160879847 5741535 complement(2090169..2091248) 1 NC_010001.1 KEGG: cbf:CLI_0723 hypothetical protein; hypothetical protein 2091248 5741535 Cphy_1704 Clostridium phytofermentans ISDg hypothetical protein YP_001558815.1 2090169 R 357809 CDS YP_001558816.1 160879848 5741536 2091851..2092915 1 NC_010001.1 hypothetical protein 2092915 5741536 Cphy_1705 Clostridium phytofermentans ISDg hypothetical protein YP_001558816.1 2091851 D 357809 CDS YP_001558817.1 160879849 5741537 2092890..2095226 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: csc:Csac_2727 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 2095226 5741537 Cphy_1706 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001558817.1 2092890 D 357809 CDS YP_001558818.1 160879850 5741538 2095571..2097463 1 NC_010001.1 KEGG: ani:AN4010.2 hypothetical protein; hypothetical protein 2097463 5741538 Cphy_1707 Clostridium phytofermentans ISDg hypothetical protein YP_001558818.1 2095571 D 357809 CDS YP_001558819.1 160879851 5741539 2097665..2099221 1 NC_010001.1 KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein; extracellular solute-binding protein 2099221 5741539 Cphy_1708 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001558819.1 2097665 D 357809 CDS YP_001558820.1 160879852 5741540 2099418..2100341 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2339 ABC transporter, permease; binding-protein-dependent transport system inner membrane protein 2100341 5741540 Cphy_1709 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001558820.1 2099418 D 357809 CDS YP_001558821.1 160879853 5741541 2100360..2101262 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2338 ABC transporter, permease; binding-protein-dependent transport systems inner membrane component 2101262 5741541 Cphy_1710 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001558821.1 2100360 D 357809 CDS YP_001558822.1 160879854 5741462 2101420..2103282 1 NC_010001.1 KEGG: bvu:BVU_0121 glycoside hydrolase family 28; endopygalactorunase-like protein 2103282 5741462 Cphy_1711 Clostridium phytofermentans ISDg endopygalactorunase-like protein YP_001558822.1 2101420 D 357809 CDS YP_001558823.1 160879855 5741463 2103332..2104336 1 NC_010001.1 KEGG: tpt:Tpet_1741 esterase/lipase-like protein; esterase/lipase-like protein 2104336 5741463 Cphy_1712 Clostridium phytofermentans ISDg esterase/lipase-like protein YP_001558823.1 2103332 D 357809 CDS YP_001558824.1 160879856 5741464 complement(2104536..2105900) 1 NC_010001.1 PFAM: coagulation factor 5/8 type domain protein; KEGG: mxa:MXAN_5269 S1D (lysyl endopeptidase) subfamily C-terminal domain protein; coagulation factor 5/8 type domain-containing protein 2105900 5741464 Cphy_1713 Clostridium phytofermentans ISDg coagulation factor 5/8 type domain-containing protein YP_001558824.1 2104536 R 357809 CDS YP_001558825.1 160879857 5741465 2106148..2109003 1 NC_010001.1 PFAM: coagulation factor 5/8 type domain protein; PKD domain containing protein; glycoside hydrolase family 85; KEGG: cpf:CPF_0285 endo-beta-N-acetylglucosaminidase; glycoside hydrolase family protein 2109003 5741465 Cphy_1714 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001558825.1 2106148 D 357809 CDS YP_001558826.1 160879858 5741466 2109418..2110368 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2339 ABC transporter, permease; binding-protein-dependent transport system inner membrane protein 2110368 5741466 Cphy_1715 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001558826.1 2109418 D 357809 CDS YP_001558827.1 160879859 5741467 2110380..2111312 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_2050 sugar transport system (permease) (binding protein dependent transporter); binding-protein-dependent transport system inner membrane protein 2111312 5741467 Cphy_1716 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001558827.1 2110380 D 357809 CDS YP_001558828.1 160879860 5741468 2111371..2112876 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein; extracellular solute-binding protein 2112876 5741468 Cphy_1717 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001558828.1 2111371 D 357809 CDS YP_001558829.1 160879861 5741469 2113177..2114133 1 NC_010001.1 PFAM: glycosidase PH1107-related; KEGG: bfs:BF1316 hypothetical protein; glycosidase PH1107-like protein 2114133 5741469 Cphy_1718 Clostridium phytofermentans ISDg glycosidase PH1107-like protein YP_001558829.1 2113177 D 357809 CDS YP_001558830.1 160879862 5741470 2114171..2115454 1 NC_010001.1 PFAM: conserved hypothetical protein; KEGG: bha:BH0790 hypothetical protein; hypothetical protein 2115454 5741470 Cphy_1719 Clostridium phytofermentans ISDg hypothetical protein YP_001558830.1 2114171 D 357809 CDS YP_001558831.1 160879863 5741471 2115625..2118756 1 NC_010001.1 PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; Glycoside hydrolase family 38 central region; KEGG: gka:GK1902 alpha-D-mannosidase; glycoside hydrolase family protein 2118756 5741471 Cphy_1720 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001558831.1 2115625 D 357809 CDS YP_001558832.1 160879864 5741472 2118995..2120716 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cpr:CPR_2057 sensor histidine kinase; histidine kinase internal region 2120716 5741472 Cphy_1721 Clostridium phytofermentans ISDg histidine kinase internal region YP_001558832.1 2118995 D 357809 CDS YP_001558833.1 160879865 5741473 2120709..2122235 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cpr:CPR_2056 DNA-binding response regulator, AraC family; two component AraC family transcriptional regulator 2122235 5741473 Cphy_1722 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001558833.1 2120709 D 357809 CDS YP_001558834.1 160879866 5741474 2122313..2123833 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein; extracellular solute-binding protein 2123833 5741474 Cphy_1723 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001558834.1 2122313 D 357809 CDS YP_001558835.1 160879867 5741475 2123969..2125384 1 NC_010001.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_2413 MATE efflux family protein; multi anti extrusion protein MatE 2125384 5741475 Cphy_1724 Clostridium phytofermentans ISDg multi anti extrusion protein MatE YP_001558835.1 2123969 D 357809 CDS YP_001558836.1 160879868 5741476 2125527..2125907 1 NC_010001.1 PFAM: Domain of unknown function DUF1801; hypothetical protein 2125907 5741476 Cphy_1725 Clostridium phytofermentans ISDg hypothetical protein YP_001558836.1 2125527 D 357809 CDS YP_001558837.1 160879869 5741477 2126093..2127109 1 NC_010001.1 hypothetical protein 2127109 5741477 Cphy_1726 Clostridium phytofermentans ISDg hypothetical protein YP_001558837.1 2126093 D 357809 CDS YP_001558838.1 160879870 5741478 2127262..2127525 1 NC_010001.1 KEGG: cbh:CLC_0444 hypothetical protein; hypothetical protein 2127525 5741478 Cphy_1727 Clostridium phytofermentans ISDg hypothetical protein YP_001558838.1 2127262 D 357809 CDS YP_001558839.1 160879871 5741479 2127956..2128729 1 NC_010001.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: swo:Swol_1122 hypothetical protein; Ku protein 2128729 5741479 Cphy_1728 Clostridium phytofermentans ISDg Ku protein YP_001558839.1 2127956 D 357809 CDS YP_001558840.1 160879872 5741480 2128734..2131175 1 NC_010001.1 TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: mRNA capping enzyme; DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: dsy:DSY0616 hypothetical protein; DNA ligase D 2131175 5741480 Cphy_1729 Clostridium phytofermentans ISDg DNA ligase D YP_001558840.1 2128734 D 357809 CDS YP_001558841.1 160879873 5741481 2131517..2133430 1 NC_010001.1 PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); KEGG: cth:Cthe_3024 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 2133430 5741481 Cphy_1730 Clostridium phytofermentans ISDg NADH dehydrogenase (quinone) YP_001558841.1 2131517 D 357809 CDS YP_001558842.1 160879874 5741482 2133430..2134290 1 NC_010001.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: cth:Cthe_3023 respiratory-chain NADH dehydrogenase, subunit 1; respiratory-chain NADH dehydrogenase subunit 1 2134290 5741482 Cphy_1731 Clostridium phytofermentans ISDg respiratory-chain NADH dehydrogenase subunit 1 YP_001558842.1 2133430 D 357809 CDS YP_001558843.1 160879875 5741483 2134384..2134818 1 NC_010001.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cth:Cthe_3022 NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit 2134818 5741483 Cphy_1732 Clostridium phytofermentans ISDg NADH ubiquinone oxidoreductase 20 kDa subunit YP_001558843.1 2134384 D 357809 CDS YP_001558844.1 160879876 5741407 2134871..2135224 1 NC_010001.1 KEGG: cth:Cthe_3021 Ech hydrogenase, subunit EchD; ech hydrogenase, subunit EchD 2135224 5741407 Cphy_1733 Clostridium phytofermentans ISDg ech hydrogenase, subunit EchD YP_001558844.1 2134871 D 357809 CDS YP_001558845.1 160879877 5741408 2135224..2136303 1 NC_010001.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: cth:Cthe_3020 NADH dehydrogenase (ubiquinone); NADH-ubiquinone oxidoreductase chain 49kDa 2136303 5741408 Cphy_1734 Clostridium phytofermentans ISDg NADH-ubiquinone oxidoreductase chain 49kDa YP_001558845.1 2135224 D 357809 CDS YP_001558846.1 160879878 5741409 2136423..2136785 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cth:Cthe_3019 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 2136785 5741409 Cphy_1735 Clostridium phytofermentans ISDg 4Fe-4S ferredoxin YP_001558846.1 2136423 D 357809 CDS YP_001558847.1 160879879 5741410 2136755..2137093 1 NC_010001.1 PFAM: hydrogenase expression/synthesis HypA; KEGG: cth:Cthe_3018 hydrogenase expression/synthesis, HypA; hydrogenase nickel incorporation protein HypA 2137093 5741410 Cphy_1736 Clostridium phytofermentans ISDg hydrogenase nickel incorporation protein HypA YP_001558847.1 2136755 D 357809 CDS YP_001558848.1 160879880 5741411 2137135..2137785 1 NC_010001.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: cth:Cthe_3017 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 2137785 5741411 Cphy_1737 Clostridium phytofermentans ISDg hydrogenase nickel incorporation protein HypB YP_001558848.1 2137135 D 357809 CDS YP_001558849.1 160879881 5741412 2137812..2140190 1 NC_010001.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: cth:Cthe_3016 (NiFe) hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF 2140190 5741412 Cphy_1738 Clostridium phytofermentans ISDg (NiFe) hydrogenase maturation protein HypF YP_001558849.1 2137812 D 357809 CDS YP_001558850.1 160879882 5741413 2140251..2140478 1 NC_010001.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: cth:Cthe_3015 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF 2140478 5741413 Cphy_1739 Clostridium phytofermentans ISDg hydrogenase assembly chaperone HypC/HupF YP_001558850.1 2140251 D 357809 CDS YP_001558851.1 160879883 5741414 2140465..2141511 1 NC_010001.1 PFAM: hydrogenase formation HypD protein; KEGG: cth:Cthe_3014 hydrogenase formation HypD protein; hydrogenase formation HypD protein 2141511 5741414 Cphy_1740 Clostridium phytofermentans ISDg hydrogenase formation HypD protein YP_001558851.1 2140465 D 357809 CDS YP_001558852.1 160879884 5741415 2141595..2142572 1 NC_010001.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cth:Cthe_3013 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 2142572 5741415 Cphy_1741 Clostridium phytofermentans ISDg hydrogenase expression/formation protein HypE YP_001558852.1 2141595 D 357809 CDS YP_001558853.1 160879885 5741416 complement(2142860..2144422) 1 NC_010001.1 KEGG: cac:CA_P0121 Leu-rich protein family protein, YaeG (E.coli) homolog; transcriptional regulator CdaR 2144422 5741416 Cphy_1742 Clostridium phytofermentans ISDg transcriptional regulator CdaR YP_001558853.1 2142860 R 357809 CDS YP_001558854.1 160879886 5741417 2144616..2147429 1 NC_010001.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Acetoacetate decarboxylase; KEGG: cac:CAC1044 NADH:flavin oxidoreductase, possible NADH oxidase; NADH:flavin oxidoreductase 2147429 5741417 Cphy_1743 Clostridium phytofermentans ISDg NADH:flavin oxidoreductase YP_001558854.1 2144616 D 357809 CDS YP_001558855.1 160879887 5741418 2147485..2148261 1 NC_010001.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: drm:Dred_3003 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2148261 5741418 Cphy_1744 Clostridium phytofermentans ISDg short-chain dehydrogenase/reductase SDR YP_001558855.1 2147485 D 357809 CDS YP_001558856.1 160879888 5741419 2148570..2149625 1 NC_010001.1 KEGG: lpf:lpl1156 methylated-DNA-[protein]-cysteine S-methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Ada metal-binding domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SMART: helix-turn-helix- domain containing protein AraC type; methylated-DNA--protein-cysteine methyltransferase 2149625 5741419 Cphy_1745 Clostridium phytofermentans ISDg methylated-DNA--protein-cysteine methyltransferase YP_001558856.1 2148570 D 357809 CDS YP_001558857.1 160879889 5741420 2149901..2150887 1 NC_010001.1 KEGG: cbe:Cbei_1278 hypothetical protein; 3-carboxymuconate cyclase 2150887 5741420 Cphy_1746 Clostridium phytofermentans ISDg 3-carboxymuconate cyclase YP_001558857.1 2149901 D 357809 CDS YP_001558858.1 160879890 5741421 2151434..2156131 1 NC_010001.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: bcl:ABC0752 minor extracellular serine protease; peptidase S8/S53 subtilisin kexin sedolisin 2156131 5741421 Cphy_1747 Clostridium phytofermentans ISDg peptidase S8/S53 subtilisin kexin sedolisin YP_001558858.1 2151434 D 357809 CDS YP_001558859.1 160879891 5741422 2156301..2156885 1 NC_010001.1 hypothetical protein 2156885 5741422 Cphy_1748 Clostridium phytofermentans ISDg hypothetical protein YP_001558859.1 2156301 D 357809 CDS YP_001558860.1 160879892 5741423 complement(2157079..2157615) 1 NC_010001.1 hypothetical protein 2157615 5741423 Cphy_1749 Clostridium phytofermentans ISDg hypothetical protein YP_001558860.1 2157079 R 357809 CDS YP_001558861.1 160879893 5741424 2158070..2159029 1 NC_010001.1 PFAM: glycosyl hydrolase family 88; KEGG: cne:CNL06720 hypothetical protein; glycosyl hydrolase family protein 2159029 5741424 Cphy_1750 Clostridium phytofermentans ISDg glycosyl hydrolase family protein YP_001558861.1 2158070 D 357809 CDS YP_001558862.1 160879894 5741425 2159506..2160132 1 NC_010001.1 PFAM: NADPH-dependent FMN reductase; KEGG: cbf:CLI_3546 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 2160132 5741425 Cphy_1751 Clostridium phytofermentans ISDg NADPH-dependent FMN reductase YP_001558862.1 2159506 D 357809 CDS YP_001558863.1 160879895 5741426 2160241..2161086 1 NC_010001.1 PFAM: aldo/keto reductase; KEGG: cbf:CLI_3545 oxidoreductase, aldo/keto reductase family; 2,5-didehydrogluconate reductase 2161086 5741426 Cphy_1752 Clostridium phytofermentans ISDg 2,5-didehydrogluconate reductase YP_001558863.1 2160241 D 357809 CDS YP_001558864.1 160879896 5741427 complement(2161296..2162033) 1 NC_010001.1 PFAM: aminotransferase class V; KEGG: cdf:CD3032 aminotransferase; class V aminotransferase 2162033 5741427 Cphy_1753 Clostridium phytofermentans ISDg class V aminotransferase YP_001558864.1 2161296 R 357809 CDS YP_001558865.1 160879897 5741428 complement(2162021..2162371) 1 NC_010001.1 KEGG: cdf:CD3032 aminotransferase; aminotransferase 2162371 5741428 Cphy_1754 Clostridium phytofermentans ISDg aminotransferase YP_001558865.1 2162021 R 357809 CDS YP_001558866.1 160879898 5741429 2162543..2162995 1 NC_010001.1 PFAM: regulatory protein MarR; KEGG: ctc:CTC01897 transcriptional regulator, MarR family; MarR family transcriptional regulator 2162995 5741429 Cphy_1755 Clostridium phytofermentans ISDg MarR family transcriptional regulator YP_001558866.1 2162543 D 357809 CDS YP_001558867.1 160879899 5741430 2162992..2163567 1 NC_010001.1 PFAM: cyclase family protein; KEGG: ctc:CTC01896 polyketide cyclase; cyclase family protein 2163567 5741430 Cphy_1756 Clostridium phytofermentans ISDg cyclase family protein YP_001558867.1 2162992 D 357809 CDS YP_001558868.1 160879900 5741431 complement(2163877..2164755) 1 NC_010001.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ckl:CKL_3374 predicted transcriptional regulator; LysR family transcriptional regulator 2164755 5741431 Cphy_1757 Clostridium phytofermentans ISDg LysR family transcriptional regulator YP_001558868.1 2163877 R 357809 CDS YP_001558869.1 160879901 5741432 2164874..2166220 1 NC_010001.1 PFAM: sodium:neurotransmitter symporter; KEGG: fnu:FN1989 sodium-dependent tyrosine transporter; sodium:neurotransmitter symporter 2166220 5741432 Cphy_1758 Clostridium phytofermentans ISDg sodium:neurotransmitter symporter YP_001558869.1 2164874 D 357809 CDS YP_001558870.1 160879902 5741433 complement(2166419..2167096) 1 NC_010001.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ctc:CTC01925 2-haloalkanoic acid dehalogenase I; hydrolase 2167096 5741433 Cphy_1759 Clostridium phytofermentans ISDg hydrolase YP_001558870.1 2166419 R 357809 CDS YP_001558871.1 160879903 5741434 complement(2167112..2167738) 1 NC_010001.1 KEGG: ctc:CTC01924 membrane spanning protein; membrane spanning protein 2167738 5741434 Cphy_1760 Clostridium phytofermentans ISDg membrane spanning protein YP_001558871.1 2167112 R 357809 CDS YP_001558872.1 160879904 5741435 2167838..2168455 1 NC_010001.1 PFAM: cyclic nucleotide-binding; KEGG: ctc:CTC01923 catabolite gene activator; cyclic nucleotide-binding protein 2168455 5741435 Cphy_1761 Clostridium phytofermentans ISDg cyclic nucleotide-binding protein YP_001558872.1 2167838 D 357809 CDS YP_001558873.1 160879905 5741436 2168688..2169272 1 NC_010001.1 KEGG: bha:BH0317 hypothetical protein; TetR family transcriptional regulator 2169272 5741436 Cphy_1762 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001558873.1 2168688 D 357809 CDS YP_001558874.1 160879906 5741437 2169265..2170761 1 NC_010001.1 PFAM: FAD dependent oxidoreductase; KEGG: mhu:Mhun_2065 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2170761 5741437 Cphy_1763 Clostridium phytofermentans ISDg FAD dependent oxidoreductase YP_001558874.1 2169265 D 357809 CDS YP_001558875.1 160879907 5741438 2170853..2171395 1 NC_010001.1 PFAM: protein of unknown function DUF1697; KEGG: det:DET1387 hypothetical protein; hypothetical protein 2171395 5741438 Cphy_1764 Clostridium phytofermentans ISDg hypothetical protein YP_001558875.1 2170853 D 357809 CDS YP_001558876.1 160879908 5741439 2171662..2172333 1 NC_010001.1 PFAM: isochorismatase hydrolase; KEGG: cth:Cthe_1178 isochorismatase hydrolase; isochorismatase hydrolase 2172333 5741439 Cphy_1765 Clostridium phytofermentans ISDg isochorismatase hydrolase YP_001558876.1 2171662 D 357809 CDS YP_001558877.1 160879909 5741440 2172334..2172660 1 NC_010001.1 PFAM: TfoX domain protein; KEGG: cbf:CLI_0805 TfoX domain protein; TfoX domain-containing protein 2172660 5741440 Cphy_1766 Clostridium phytofermentans ISDg TfoX domain-containing protein YP_001558877.1 2172334 D 357809 CDS YP_001558878.1 160879910 5741441 complement(2172848..2173201) 1 NC_010001.1 hypothetical protein 2173201 5741441 Cphy_1767 Clostridium phytofermentans ISDg hypothetical protein YP_001558878.1 2172848 R 357809 CDS YP_001558879.1 160879911 5741442 2173688..2175943 1 NC_010001.1 KEGG: cbe:Cbei_0751 PTS system, glucose subfamily, IIA subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; PTS system, glucose subfamily, IIA subunit 2175943 5741442 Cphy_1768 Clostridium phytofermentans ISDg PTS system, glucose subfamily, IIA subunit YP_001558879.1 2173688 D 357809 CDS YP_001558880.1 160879912 5741443 2176081..2176338 1 NC_010001.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: blo:BL0412 histidine-containing phosphocarrier protein (Hpr protein) of Pts transport system; phosphotransferase system, phosphocarrier protein HPr 2176338 5741443 Cphy_1769 Clostridium phytofermentans ISDg phosphotransferase system, phosphocarrier protein HPr YP_001558880.1 2176081 D 357809 CDS YP_001558881.1 160879913 5741444 2176394..2178028 1 NC_010001.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: blo:BL0411 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 2178028 5741444 Cphy_1770 Clostridium phytofermentans ISDg phosphoenolpyruvate-protein phosphotransferase YP_001558881.1 2176394 D 357809 CDS YP_001558882.1 160879914 5741445 2178381..2178704 1 NC_010001.1 hypothetical protein 2178704 5741445 Cphy_1771 Clostridium phytofermentans ISDg hypothetical protein YP_001558882.1 2178381 D 357809 CDS YP_001558883.1 160879915 5741447 complement(2180350..2183319) 1 NC_010001.1 hypothetical protein 2183319 5741447 Cphy_1774 Clostridium phytofermentans ISDg hypothetical protein YP_001558883.1 2180350 R 357809 CDS YP_001558884.1 160879916 5741448 complement(2183504..2189857) 1 NC_010001.1 PFAM: coagulation factor 5/8 type domain protein; S-layer domain protein; KEGG: cbe:Cbei_2675 coagulation factor 5/8 type domain protein; S-layer domain-containing protein 2189857 5741448 Cphy_1775 Clostridium phytofermentans ISDg S-layer domain-containing protein YP_001558884.1 2183504 R 357809 CDS YP_001558885.1 160879917 5741449 complement(2190317..2190892) 1 NC_010001.1 KEGG: cbe:Cbei_2858 hypothetical protein; hypothetical protein 2190892 5741449 Cphy_1776 Clostridium phytofermentans ISDg hypothetical protein YP_001558885.1 2190317 R 357809 CDS YP_001558886.1 160879918 5741450 complement(2191211..2192206) 1 NC_010001.1 KEGG: swo:Swol_1838 hypothetical protein; hypothetical protein 2192206 5741450 Cphy_1777 Clostridium phytofermentans ISDg hypothetical protein YP_001558886.1 2191211 R 357809 CDS YP_001558887.1 160879919 5741451 2192309..2192749 1 NC_010001.1 KEGG: dsy:DSY1202 hypothetical protein; hypothetical protein 2192749 5741451 Cphy_1778 Clostridium phytofermentans ISDg hypothetical protein YP_001558887.1 2192309 D 357809 CDS YP_001558888.1 160879920 5741452 complement(2192857..2193663) 1 NC_010001.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; anaerobic cobalt chelatase; KEGG: tde:TDE2656 cobalt chelatase; anaerobic cobalt chelatase 2193663 5741452 Cphy_1779 Clostridium phytofermentans ISDg anaerobic cobalt chelatase YP_001558888.1 2192857 R 357809 CDS YP_001558889.1 160879921 5741453 complement(2193934..2194968) 1 NC_010001.1 PFAM: conserved hypothetical protein; KEGG: cbf:CLI_0435 hypothetical protein; hypothetical protein 2194968 5741453 Cphy_1780 Clostridium phytofermentans ISDg hypothetical protein YP_001558889.1 2193934 R 357809 CDS YP_001558890.1 160879922 5741454 complement(2195067..2196020) 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: cdf:CD1796 nitrite and sulfite reductase subunit; nitrite and sulfite reductase 4Fe-4S region 2196020 5741454 Cphy_1781 Clostridium phytofermentans ISDg nitrite and sulfite reductase 4Fe-4S region YP_001558890.1 2195067 R 357809 CDS YP_001558891.1 160879923 5741455 complement(2196182..2197801) 1 NC_010001.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cdf:CD1797 pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2197801 5741455 Cphy_1782 Clostridium phytofermentans ISDg FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001558891.1 2196182 R 357809 CDS YP_001558892.1 160879924 5741456 2197991..2198899 1 NC_010001.1 PFAM: regulatory protein MarR; regulatory protein LysR; LysR substrate-binding; KEGG: cdf:CD1798 LysR-family transcriptional regulator; MarR family transcriptional regulator 2198899 5741456 Cphy_1783 Clostridium phytofermentans ISDg MarR family transcriptional regulator YP_001558892.1 2197991 D 357809 CDS YP_001558893.1 160879925 5741457 2199381..2200622 1 NC_010001.1 KEGG: cth:Cthe_2525 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; glutamyl-tRNA reductase 2200622 5741457 Cphy_1784 Clostridium phytofermentans ISDg glutamyl-tRNA reductase YP_001558893.1 2199381 D 357809 CDS YP_001558894.1 160879926 5741458 2200671..2201126 1 NC_010001.1 TIGRFAM: siroheme synthase; KEGG: cth:Cthe_2526 precorrin-2 oxidase / ferrochelatase; siroheme synthase 2201126 5741458 Cphy_1785 Clostridium phytofermentans ISDg siroheme synthase YP_001558894.1 2200671 D 357809 CDS YP_001558895.1 160879927 5741459 2201182..2202087 1 NC_010001.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 2202087 hemC 5741459 hemC Clostridium phytofermentans ISDg porphobilinogen deaminase YP_001558895.1 2201182 D 357809 CDS YP_001558896.1 160879928 5741460 2202084..2203577 1 NC_010001.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: cth:Cthe_2528 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 2203577 5741460 Cphy_1787 Clostridium phytofermentans ISDg uroporphyrin-III C-methyltransferase YP_001558896.1 2202084 D 357809 CDS YP_001558897.1 160879929 5741461 2203765..2204748 1 NC_010001.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 2204748 5741461 Cphy_1788 Clostridium phytofermentans ISDg delta-aminolevulinic acid dehydratase YP_001558897.1 2203765 D 357809 CDS YP_001558898.1 160879930 5743078 2204748..2206028 1 NC_010001.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 2206028 5743078 Cphy_1789 Clostridium phytofermentans ISDg glutamate-1-semialdehyde aminotransferase YP_001558898.1 2204748 D 357809 CDS YP_001558899.1 160879931 5743079 2206410..2206877 1 NC_010001.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: cbe:Cbei_3628 DNA binding domain, excisionase family; DNA binding domain-containing protein 2206877 5743079 Cphy_1790 Clostridium phytofermentans ISDg DNA binding domain-containing protein YP_001558899.1 2206410 D 357809 CDS YP_001558900.1 160879932 5743080 2206918..2207283 1 NC_010001.1 KEGG: btk:BT9727_2493 hypothetical protein; hypothetical protein 2207283 5743080 Cphy_1791 Clostridium phytofermentans ISDg hypothetical protein YP_001558900.1 2206918 D 357809 CDS YP_001558901.1 160879933 5743081 2207779..2209167 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: pac:PPA0085 periplasmic protein; extracellular solute-binding protein 2209167 5743081 Cphy_1792 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001558901.1 2207779 D 357809 CDS YP_001558902.1 160879934 5743082 2209241..2210020 1 NC_010001.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cdf:CD0691 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2210020 5743082 Cphy_1793 Clostridium phytofermentans ISDg short-chain dehydrogenase/reductase SDR YP_001558902.1 2209241 D 357809 CDS YP_001558903.1 160879935 5743084 complement(2210715..2211404) 1 NC_010001.1 hypothetical protein 2211404 5743084 Cphy_1795 Clostridium phytofermentans ISDg hypothetical protein YP_001558903.1 2210715 R 357809 CDS YP_001558904.1 160879936 5743085 2212085..2212777 1 NC_010001.1 PFAM: beta-lactamase domain protein; KEGG: cbe:Cbei_3495 beta-lactamase domain protein; beta-lactamase domain-containing protein 2212777 5743085 Cphy_1796 Clostridium phytofermentans ISDg beta-lactamase domain-containing protein YP_001558904.1 2212085 D 357809 CDS YP_001558905.1 160879937 5743086 2213030..2213542 1 NC_010001.1 KEGG: cno:NT01CX_1075 hypothetical protein; hypothetical protein 2213542 5743086 Cphy_1797 Clostridium phytofermentans ISDg hypothetical protein YP_001558905.1 2213030 D 357809 CDS YP_001558906.1 160879938 5743087 2213800..2214297 1 NC_010001.1 KEGG: cha:CHAB381_0329 mercuric transport protein periplasmic component; mercuric transport periplasmic protein 2214297 5743087 Cphy_1798 Clostridium phytofermentans ISDg mercuric transport periplasmic protein YP_001558906.1 2213800 D 357809 CDS YP_001558907.1 160879939 5743088 complement(2214443..2216098) 1 NC_010001.1 PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; SMART: chitinase II; KEGG: sco:SCO5003 chitinase A precursor; glycoside hydrolase family protein 2216098 5743088 Cphy_1799 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001558907.1 2214443 R 357809 CDS YP_001558908.1 160879940 5743089 complement(2216331..2218289) 1 NC_010001.1 PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; SMART: chitinase II; KEGG: cbe:Cbei_2830 glycoside hydrolase, family 18; glycoside hydrolase family protein 2218289 5743089 Cphy_1800 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001558908.1 2216331 R 357809 CDS YP_001558909.1 160879941 5743090 2219386..2221623 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lwe:lwe2070 UvrABC system protein A; ABC transporter 2221623 5743090 Cphy_1801 Clostridium phytofermentans ISDg ABC transporter YP_001558909.1 2219386 D 357809 CDS YP_001558910.1 160879942 5743091 complement(2221794..2223398) 1 NC_010001.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; KEGG: blo:BL1038 possible calcium-transporting ATPase 10, plasma membrane-type; P-type HAD superfamily ATPase 2223398 5743091 Cphy_1802 Clostridium phytofermentans ISDg P-type HAD superfamily ATPase YP_001558910.1 2221794 R 357809 CDS YP_001558911.1 160879943 5743092 2223909..2225213 1 NC_010001.1 KEGG: ckl:CKL_2277 predicted transposase; transposase 2225213 5743092 Cphy_1803 Clostridium phytofermentans ISDg transposase YP_001558911.1 2223909 D 357809 CDS YP_001558912.1 160879944 5743093 complement(2225682..2228213) 1 NC_010001.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mba:Mbar_A2103 magnesium transport P-type atpase; P-type HAD superfamily ATPase 2228213 5743093 Cphy_1804 Clostridium phytofermentans ISDg P-type HAD superfamily ATPase YP_001558912.1 2225682 R 357809 CDS YP_001558913.1 160879945 5743094 complement(2228494..2229168) 1 NC_010001.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF1232; KEGG: ckl:CKL_1607 transcriptional regulator; XRE family transcriptional regulator 2229168 5743094 Cphy_1805 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001558913.1 2228494 R 357809 CDS YP_001558914.1 160879946 5743095 2229469..2231334 1 NC_010001.1 TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: cbf:CLI_1148 conserved repeat domain protein; hypothetical protein 2231334 5743095 Cphy_1806 Clostridium phytofermentans ISDg hypothetical protein YP_001558914.1 2229469 D 357809 CDS YP_001558915.1 160879947 5743096 2231766..2232170 1 NC_010001.1 PFAM: Domain of unknown function DUF1801; KEGG: reu:Reut_B4111 hypothetical protein; hypothetical protein 2232170 5743096 Cphy_1807 Clostridium phytofermentans ISDg hypothetical protein YP_001558915.1 2231766 D 357809 CDS YP_001558916.1 160879948 5743097 2232772..2232987 1 NC_010001.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cac:CAC0669 hypothetical protein; BFD/(2Fe-2S)-binding domain-containing protein 2232987 5743097 Cphy_1808 Clostridium phytofermentans ISDg BFD/(2Fe-2S)-binding domain-containing protein YP_001558916.1 2232772 D 357809 CDS YP_001558917.1 160879949 5743098 2233626..2234207 1 NC_010001.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: tte:TTE1982 ribosomal protein L25 (general stress protein Ctc); ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 2234207 5743098 Cphy_1809 Clostridium phytofermentans ISDg ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_001558917.1 2233626 D 357809 CDS YP_001558918.1 160879950 5743099 complement(2234673..2236013) 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbf:CLI_2014 MATE efflux family protein; MATE efflux family protein 2236013 5743099 Cphy_1810 Clostridium phytofermentans ISDg MATE efflux family protein YP_001558918.1 2234673 R 357809 CDS YP_001558919.1 160879951 5743100 2236246..2236704 1 NC_010001.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: bld:BLi03851 YwrC; AsnC family transcriptional regulator 2236704 5743100 Cphy_1811 Clostridium phytofermentans ISDg AsnC family transcriptional regulator YP_001558919.1 2236246 D 357809 CDS YP_001558920.1 160879952 5743101 complement(2237102..2239186) 1 NC_010001.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 2239186 hppA 5743101 hppA Clostridium phytofermentans ISDg membrane-bound proton-translocating pyrophosphatase YP_001558920.1 2237102 R 357809 CDS YP_001558921.1 160879953 5743102 2239524..2239865 1 NC_010001.1 hypothetical protein 2239865 5743102 Cphy_1813 Clostridium phytofermentans ISDg hypothetical protein YP_001558921.1 2239524 D 357809 CDS YP_001558922.1 160879954 5743103 2240387..2241178 1 NC_010001.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mba:Mbar_A3478 hypothetical protein; methyltransferase type 12 2241178 5743103 Cphy_1814 Clostridium phytofermentans ISDg methyltransferase type 12 YP_001558922.1 2240387 D 357809 CDS YP_001558923.1 160879955 5743104 2241716..2244034 1 NC_010001.1 PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype; KEGG: cac:CAC3280 possible surface protein, responsible for cell interaction; contains cell adhesion domain and ChW-repeats; leucine-rich repeat-containing protein 2244034 5743104 Cphy_1815 Clostridium phytofermentans ISDg leucine-rich repeat-containing protein YP_001558923.1 2241716 D 357809 CDS YP_001558924.1 160879956 5743105 2244708..2246063 1 NC_010001.1 TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: Gluconate transporter; C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: efa:EF1920 C4-dicarboxylate anaerobic carrier; anaerobic C4-dicarboxylate transporter 2246063 5743105 Cphy_1816 Clostridium phytofermentans ISDg anaerobic C4-dicarboxylate transporter YP_001558924.1 2244708 D 357809 CDS YP_001558925.1 160879957 5743106 2246159..2246575 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: blo:BL1769 conserved hypothetical protein with acetyl transferase (GnaT) domain; N-acetyltransferase GCN5 2246575 5743106 Cphy_1817 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001558925.1 2246159 D 357809 CDS YP_001558926.1 160879958 5743107 2246773..2247699 1 NC_010001.1 PFAM: PfkB domain protein; KEGG: pin:Ping_0344 ribokinase; ribokinase-like domain-containing protein 2247699 5743107 Cphy_1818 Clostridium phytofermentans ISDg ribokinase-like domain-containing protein YP_001558926.1 2246773 D 357809 CDS YP_001558927.1 160879959 5743108 2247692..2248612 1 NC_010001.1 catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 2248612 5743108 Cphy_1819 Clostridium phytofermentans ISDg ribonucleoside hydrolase RihC YP_001558927.1 2247692 D 357809 CDS YP_001558928.1 160879960 5743109 2248749..2250164 1 NC_010001.1 TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: blo:BL1771 C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter 2250164 5743109 Cphy_1820 Clostridium phytofermentans ISDg anaerobic C4-dicarboxylate transporter YP_001558928.1 2248749 D 357809 CDS YP_001558929.1 160879961 5743110 2250232..2251248 1 NC_010001.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0201 Transcriptional regulator; LacI family transcriptional regulator 2251248 5743110 Cphy_1821 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001558929.1 2250232 D 357809 CDS YP_001558930.1 160879962 5743111 2251694..2252137 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: esa:ESA_02128 hypothetical protein; N-acetyltransferase GCN5 2252137 5743111 Cphy_1822 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001558930.1 2251694 D 357809 CDS YP_001558931.1 160879963 5743112 2252443..2255100 1 NC_010001.1 TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor G domain IV; protein of unknown function DUF901; KEGG: cth:Cthe_0033 small GTP-binding protein; small GTP-binding protein 2255100 5743112 Cphy_1823 Clostridium phytofermentans ISDg small GTP-binding protein YP_001558931.1 2252443 D 357809 CDS YP_001558932.1 160879964 5743113 2255253..2255684 1 NC_010001.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: mta:Moth_1653 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 2255684 5743113 Cphy_1824 Clostridium phytofermentans ISDg BadM/Rrf2 family transcriptional regulator YP_001558932.1 2255253 D 357809 CDS YP_001558933.1 160879965 5743114 2255921..2256784 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: dsy:DSY2948 hypothetical protein; nitrite and sulfite reductase 4Fe-4S region 2256784 5743114 Cphy_1825 Clostridium phytofermentans ISDg nitrite and sulfite reductase 4Fe-4S region YP_001558933.1 2255921 D 357809 CDS YP_001558934.1 160879966 5743115 2256918..2257940 1 NC_010001.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: cbe:Cbei_4194 sulfate ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter, periplasmic sulfate-binding protein 2257940 5743115 Cphy_1826 Clostridium phytofermentans ISDg sulfate ABC transporter, periplasmic sulfate-binding protein YP_001558934.1 2256918 D 357809 CDS YP_001558935.1 160879967 5743116 2257959..2258801 1 NC_010001.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ckl:CKL_1802 CysT; sulfate ABC transporter, inner membrane subunit CysT 2258801 5743116 Cphy_1827 Clostridium phytofermentans ISDg sulfate ABC transporter, inner membrane subunit CysT YP_001558935.1 2257959 D 357809 CDS YP_001558936.1 160879968 5743117 2258812..2259816 1 NC_010001.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbe:Cbei_4191 sulfate ABC transporter, inner membrane subunit CysW; sulfate ABC transporter permease 2259816 5743117 Cphy_1828 Clostridium phytofermentans ISDg sulfate ABC transporter permease YP_001558936.1 2258812 D 357809 CDS YP_001558937.1 160879969 5743118 2260015..2261079 1 NC_010001.1 KEGG: cbe:Cbei_4190 sulfate ABC transporter, ATPase subunit; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase 2261079 5743118 Cphy_1829 Clostridium phytofermentans ISDg sulfate ABC transporter ATPase YP_001558937.1 2260015 D 357809 CDS YP_001558938.1 160879970 5743119 2261232..2262932 1 NC_010001.1 catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; adenylylsulfate reductase subunit alpha 2262932 5743119 Cphy_1830 Clostridium phytofermentans ISDg adenylylsulfate reductase subunit alpha YP_001558938.1 2261232 D 357809 CDS YP_001558939.1 160879971 5743120 2262916..2263227 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cac:CAC0105 ferredoxin; 4Fe-4S ferredoxin 2263227 5743120 Cphy_1831 Clostridium phytofermentans ISDg 4Fe-4S ferredoxin YP_001558939.1 2262916 D 357809 CDS YP_001558940.1 160879972 5743121 2263444..2264346 1 NC_010001.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 2264346 5743121 Cphy_1832 Clostridium phytofermentans ISDg sulfate adenylyltransferase subunit 2 YP_001558940.1 2263444 D 357809 CDS YP_001558941.1 160879973 5743122 2264346..2266037 1 NC_010001.1 KEGG: cbe:Cbei_4186 sulfate adenylyltransferase, large subunit; TIGRFAM: small GTP-binding protein; sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; sulfate adenylyltransferase, large subunit 2266037 5743122 Cphy_1833 Clostridium phytofermentans ISDg sulfate adenylyltransferase, large subunit YP_001558941.1 2264346 D 357809 CDS YP_001558942.1 160879974 5743123 complement(2266336..2267001) 1 NC_010001.1 hypothetical protein 2267001 5743123 Cphy_1834 Clostridium phytofermentans ISDg hypothetical protein YP_001558942.1 2266336 R 357809 CDS YP_001558943.1 160879975 5743124 complement(2267232..2268836) 1 NC_010001.1 KEGG: bha:BH1004 ABC-2 type transport system permease; ABC-2 type transport system permease 2268836 5743124 Cphy_1835 Clostridium phytofermentans ISDg ABC-2 type transport system permease YP_001558943.1 2267232 R 357809 CDS YP_001558944.1 160879976 5743125 complement(2268839..2269735) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1003 ABC transporter (ATP-binding protein); ABC transporter 2269735 5743125 Cphy_1836 Clostridium phytofermentans ISDg ABC transporter YP_001558944.1 2268839 R 357809 CDS YP_001558945.1 160879977 5743126 complement(2269861..2270469) 1 NC_010001.1 PFAM: regulatory protein TetR; KEGG: ckl:CKL_3748 transcriptional regulator; TetR family transcriptional regulator 2270469 5743126 Cphy_1837 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001558945.1 2269861 R 357809 CDS YP_001558946.1 160879978 5743127 2271003..2271590 1 NC_010001.1 PFAM: regulatory protein TetR; KEGG: cbf:CLI_1106 transcriptional regulator, TetR family; TetR family transcriptional regulator 2271590 5743127 Cphy_1838 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001558946.1 2271003 D 357809 CDS YP_001558947.1 160879979 5743128 2271583..2271999 1 NC_010001.1 KEGG: mst:Msp_0843 hypothetical protein; hypothetical protein 2271999 5743128 Cphy_1839 Clostridium phytofermentans ISDg hypothetical protein YP_001558947.1 2271583 D 357809 CDS YP_001558948.1 160879980 5743129 2272021..2272560 1 NC_010001.1 KEGG: cpf:CPF_1044 hypothetical protein; multimeric flavodoxin WrbA-like protein 2272560 5743129 Cphy_1840 Clostridium phytofermentans ISDg multimeric flavodoxin WrbA-like protein YP_001558948.1 2272021 D 357809 CDS YP_001558949.1 160879981 5743130 2272557..2273213 1 NC_010001.1 KEGG: cac:CAC0755 multimeric flavodoxin WrbA family protein, diverged or disrupted; hypothetical protein 2273213 5743130 Cphy_1841 Clostridium phytofermentans ISDg hypothetical protein YP_001558949.1 2272557 D 357809 CDS YP_001558950.1 160879982 5743131 2273514..2274101 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cmi:CMM_0312 acetyltransferase; N-acetyltransferase GCN5 2274101 5743131 Cphy_1842 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001558950.1 2273514 D 357809 CDS YP_001558951.1 160879983 5743132 2274130..2274657 1 NC_010001.1 PFAM: protein of unknown function DUF402; KEGG: oih:OB0349 hypothetical protein; hypothetical protein 2274657 5743132 Cphy_1843 Clostridium phytofermentans ISDg hypothetical protein YP_001558951.1 2274130 D 357809 CDS YP_001558952.1 160879984 5743133 2274803..2275228 1 NC_010001.1 PFAM: regulatory protein MarR; KEGG: bcz:pE33L466_0362 transcriptional regulator, MarR family; MarR family transcriptional regulator 2275228 5743133 Cphy_1844 Clostridium phytofermentans ISDg MarR family transcriptional regulator YP_001558952.1 2274803 D 357809 CDS YP_001558953.1 160879985 5743134 2275424..2276128 1 NC_010001.1 PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3058 pirin domain protein; pirin 2276128 5743134 Cphy_1845 Clostridium phytofermentans ISDg pirin YP_001558953.1 2275424 D 357809 CDS YP_001558954.1 160879986 5743135 complement(2276444..2276983) 1 NC_010001.1 KEGG: cpr:CPR_0953 hypothetical protein; hypothetical protein 2276983 5743135 Cphy_1846 Clostridium phytofermentans ISDg hypothetical protein YP_001558954.1 2276444 R 357809 CDS YP_001558955.1 160879987 5743136 2277137..2277997 1 NC_010001.1 PFAM: polysaccharide deacetylase; KEGG: cdf:CD1430 exported polysaccharide deacetylase; polysaccharide deacetylase 2277997 5743136 Cphy_1847 Clostridium phytofermentans ISDg polysaccharide deacetylase YP_001558955.1 2277137 D 357809 CDS YP_001558956.1 160879988 5743137 2278216..2278464 1 NC_010001.1 KEGG: cbf:CLI_2295 transcriptional regulator, MerR family; MerR family transcriptional regulator 2278464 5743137 Cphy_1848 Clostridium phytofermentans ISDg MerR family transcriptional regulator YP_001558956.1 2278216 D 357809 CDS YP_001558957.1 160879989 5743138 2278630..2278938 1 NC_010001.1 KEGG: cpf:CPF_1053 DNA-binding protein; hypothetical protein 2278938 5743138 Cphy_1849 Clostridium phytofermentans ISDg hypothetical protein YP_001558957.1 2278630 D 357809 CDS YP_001558958.1 160879990 5743139 2279006..2279350 1 NC_010001.1 PFAM: helix-turn-helix HxlR type; KEGG: cpr:CPR_0720 cinnamoyl ester hydrolase; HxlR family transcriptional regulator 2279350 5743139 Cphy_1850 Clostridium phytofermentans ISDg HxlR family transcriptional regulator YP_001558958.1 2279006 D 357809 CDS YP_001558959.1 160879991 5743140 2279608..2280837 1 NC_010001.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; cytochrome c biogenesis protein transmembrane region; Redoxin domain protein; Thioredoxin domain; KEGG: cpr:CPR_0721 cytochrome c biogenesis protein transmembrane region family; cytochrome c biogenesis protein transmembrane region 2280837 5743140 Cphy_1851 Clostridium phytofermentans ISDg cytochrome c biogenesis protein transmembrane region YP_001558959.1 2279608 D 357809 CDS YP_001558960.1 160879992 5743141 2281237..2281617 1 NC_010001.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cdf:CD3610 glyoxalase; glyoxalase/bleomycin resistance protein/dioxygenase 2281617 5743141 Cphy_1852 Clostridium phytofermentans ISDg glyoxalase/bleomycin resistance protein/dioxygenase YP_001558960.1 2281237 D 357809 CDS YP_001558961.1 160879993 5743142 complement(2281811..2282233) 1 NC_010001.1 KEGG: cth:Cthe_1547 hypothetical protein; hypothetical protein 2282233 5743142 Cphy_1853 Clostridium phytofermentans ISDg hypothetical protein YP_001558961.1 2281811 R 357809 CDS YP_001558962.1 160879994 5743143 complement(2282230..2282910) 1 NC_010001.1 KEGG: ctc:CTC02470 hypothetical protein; hypothetical protein 2282910 5743143 Cphy_1854 Clostridium phytofermentans ISDg hypothetical protein YP_001558962.1 2282230 R 357809 CDS YP_001558963.1 160879995 5743144 complement(2282934..2283368) 1 NC_010001.1 KEGG: cpf:CPF_1105 hypothetical protein; hypothetical protein 2283368 5743144 Cphy_1855 Clostridium phytofermentans ISDg hypothetical protein YP_001558963.1 2282934 R 357809 CDS YP_001558964.1 160879996 5743145 complement(2283424..2283981) 1 NC_010001.1 PFAM: regulatory protein TetR; KEGG: ctc:CTC02471 transcription regulator; TetR family transcriptional regulator 2283981 5743145 Cphy_1856 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001558964.1 2283424 R 357809 CDS YP_001558965.1 160879997 5743146 complement(2284398..2287055) 1 NC_010001.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: blo:BL1369 large protein with N-terminal similarity to ATP binding protein of ABC transporter; ABC transporter 2287055 5743146 Cphy_1857 Clostridium phytofermentans ISDg ABC transporter YP_001558965.1 2284398 R 357809 CDS YP_001558966.1 160879998 5743147 2287562..2288530 1 NC_010001.1 KEGG: dsy:DSY0552 hypothetical protein; hypothetical protein 2288530 5743147 Cphy_1858 Clostridium phytofermentans ISDg hypothetical protein YP_001558966.1 2287562 D 357809 CDS YP_001558967.1 160879999 5743148 2288545..2288772 1 NC_010001.1 KEGG: dsy:DSY0553 hypothetical protein; XRE family transcriptional regulator 2288772 5743148 Cphy_1859 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001558967.1 2288545 D 357809 CDS YP_001558968.1 160880000 5743149 2288762..2289757 1 NC_010001.1 KEGG: dsy:DSY0554 hypothetical protein; hypothetical protein 2289757 5743149 Cphy_1860 Clostridium phytofermentans ISDg hypothetical protein YP_001558968.1 2288762 D 357809 CDS YP_001558969.1 160880001 5743150 2290142..2290819 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amt:Amet_1917 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2290819 5743150 Cphy_1861 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001558969.1 2290142 D 357809 CDS YP_001558970.1 160880002 5743151 2290812..2291861 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: amt:Amet_1918 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2291861 5743151 Cphy_1862 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001558970.1 2290812 D 357809 CDS YP_001558971.1 160880003 5743152 2292105..2292530 1 NC_010001.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ckl:CKL_2305 hypothetical protein; CDP-alcohol phosphatidyltransferase 2292530 5743152 Cphy_1863 Clostridium phytofermentans ISDg CDP-alcohol phosphatidyltransferase YP_001558971.1 2292105 D 357809 CDS YP_001558972.1 160880004 5743153 2293073..2293687 1 NC_010001.1 PFAM: regulatory protein TetR; KEGG: cbe:Cbei_4692 transcriptional regulator, TetR family; TetR family transcriptional regulator 2293687 5743153 Cphy_1864 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001558972.1 2293073 D 357809 CDS YP_001558973.1 160880005 5743154 2293691..2294365 1 NC_010001.1 PFAM: NADPH-dependent FMN reductase; KEGG: mla:Mlab_1736 hypothetical protein; NADPH-dependent FMN reductase 2294365 5743154 Cphy_1865 Clostridium phytofermentans ISDg NADPH-dependent FMN reductase YP_001558973.1 2293691 D 357809 CDS YP_001558974.1 160880006 5743155 2294555..2295754 1 NC_010001.1 KEGG: rci:RCIX1074 hypothetical protein; hypothetical protein 2295754 5743155 Cphy_1866 Clostridium phytofermentans ISDg hypothetical protein YP_001558974.1 2294555 D 357809 CDS YP_001558975.1 160880007 5743156 2295917..2297356 1 NC_010001.1 hypothetical protein 2297356 5743156 Cphy_1867 Clostridium phytofermentans ISDg hypothetical protein YP_001558975.1 2295917 D 357809 CDS YP_001558976.1 160880008 5743157 complement(2297567..2299213) 1 NC_010001.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: cbf:CLI_0245 pyridine nucleotide-disulphide oxidoreductase family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2299213 5743157 Cphy_1868 Clostridium phytofermentans ISDg FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001558976.1 2297567 R 357809 CDS YP_001558977.1 160880009 5743158 complement(2299236..2299589) 1 NC_010001.1 PFAM: Rhodanese domain protein; KEGG: cbf:CLI_1221 phage shock protein; rhodanese domain-containing protein 2299589 5743158 Cphy_1869 Clostridium phytofermentans ISDg rhodanese domain-containing protein YP_001558977.1 2299236 R 357809 CDS YP_001558978.1 160880010 5743159 2300033..2300503 1 NC_010001.1 KEGG: dsy:DSY4364 hypothetical protein; hypothetical protein 2300503 5743159 Cphy_1870 Clostridium phytofermentans ISDg hypothetical protein YP_001558978.1 2300033 D 357809 CDS YP_001558979.1 160880011 5743160 2300628..2301188 1 NC_010001.1 PFAM: metallophosphoesterase; KEGG: sme:SMb20398 hypothetical protein; metallophosphoesterase 2301188 5743160 Cphy_1871 Clostridium phytofermentans ISDg metallophosphoesterase YP_001558979.1 2300628 D 357809 CDS YP_001558980.1 160880012 5743161 2301347..2302306 1 NC_010001.1 KEGG: btk:BT9727_0548 hypothetical protein; homoserine kinase type II (protein kinase fold)-like protein 2302306 5743161 Cphy_1872 Clostridium phytofermentans ISDg homoserine kinase type II (protein kinase fold)-like protein YP_001558980.1 2301347 D 357809 CDS YP_001558981.1 160880013 5743162 2302530..2305805 1 NC_010001.1 PFAM: Carbohydrate binding family 6; APHP domain protein; SMART: cellulose binding type IV; Parallel beta-helix repeat; KEGG: sco:SCO7037 secreted protein; carbohydrate-binding family 6 protein 2305805 5743162 Cphy_1873 Clostridium phytofermentans ISDg carbohydrate-binding family 6 protein YP_001558981.1 2302530 D 357809 CDS YP_001558982.1 160880014 5743163 2305913..2308174 1 NC_010001.1 PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: tte:TTE0798 Trehalose and maltose hydrolases (possible phosphorylases); Kojibiose phosphorylase 2308174 5743163 Cphy_1874 Clostridium phytofermentans ISDg Kojibiose phosphorylase YP_001558982.1 2305913 D 357809 CDS YP_001558983.1 160880015 5744554 2308280..2308927 1 NC_010001.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cac:CAC2614 beta-phosphoglucomutase; beta-phosphoglucomutase 2308927 5744554 Cphy_1875 Clostridium phytofermentans ISDg beta-phosphoglucomutase YP_001558983.1 2308280 D 357809 CDS YP_001558984.1 160880016 5744555 2309264..2310301 1 NC_010001.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cbe:Cbei_1439 regulatory protein, LacI; LacI family transcriptional regulator 2310301 5744555 Cphy_1876 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001558984.1 2309264 D 357809 CDS YP_001558985.1 160880017 5744556 2310355..2312748 1 NC_010001.1 PFAM: glycoside hydrolase family 31; KEGG: bad:BAD_1599 alpha-xylosidase; glycoside hydrolase family protein 2312748 5744556 Cphy_1877 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001558985.1 2310355 D 357809 CDS YP_001558986.1 160880018 5744557 2312810..2314963 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: csc:Csac_2452 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2314963 5744557 Cphy_1878 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001558986.1 2312810 D 357809 CDS YP_001558987.1 160880019 5744558 2315244..2316557 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: cdi:DIP0534 sugar-binding secreted protein; extracellular solute-binding protein 2316557 5744558 Cphy_1879 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001558987.1 2315244 D 357809 CDS YP_001558988.1 160880020 5744559 2316885..2318273 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF1344 sugar ABC transporter, permease; fructose-bisphosphate aldolase 2318273 5744559 Cphy_1880 Clostridium phytofermentans ISDg fructose-bisphosphate aldolase YP_001558988.1 2316885 D 357809 CDS YP_001558989.1 160880021 5744560 2318273..2319553 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF1343 sugar ABC transporter, permease; binding-protein-dependent transport system inner membrane protein 2319553 5744560 Cphy_1881 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001558989.1 2318273 D 357809 CDS YP_001558990.1 160880022 5744561 2319649..2323881 1 NC_010001.1 SMART: Parallel beta-helix repeat; KEGG: sco:SCO7037 secreted protein; parallel beta-helix repeat-containing protein 2323881 5744561 Cphy_1882 Clostridium phytofermentans ISDg parallel beta-helix repeat-containing protein YP_001558990.1 2319649 D 357809 CDS YP_001558991.1 160880023 5744562 2324145..2325200 1 NC_010001.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: asu:Asuc_1193 periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator 2325200 5744562 Cphy_1883 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001558991.1 2324145 D 357809 CDS YP_001558992.1 160880024 5744563 2325318..2326274 1 NC_010001.1 PFAM: dihydrouridine synthase DuS; KEGG: cno:NT01CX_1427 probable transcriptional regulator; dihydrouridine synthase DuS 2326274 5744563 Cphy_1884 Clostridium phytofermentans ISDg dihydrouridine synthase DuS YP_001558992.1 2325318 D 357809 CDS YP_001558993.1 160880025 5744564 2326384..2326995 1 NC_010001.1 KEGG: cac:CAC1508 hypothetical protein; hypothetical protein 2326995 5744564 Cphy_1885 Clostridium phytofermentans ISDg hypothetical protein YP_001558993.1 2326384 D 357809 CDS YP_001558994.1 160880026 5744565 2327638..2329545 1 NC_010001.1 PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: gtn:GTNG_3106 cell wall lytic activity; peptidoglycan binding domain-containing protein 2329545 5744565 Cphy_1886 Clostridium phytofermentans ISDg peptidoglycan binding domain-containing protein YP_001558994.1 2327638 D 357809 CDS YP_001558995.1 160880027 5744566 2329767..2332379 1 NC_010001.1 KEGG: shn:Shewana3_1825 ATPase-like protein; hypothetical protein 2332379 5744566 Cphy_1887 Clostridium phytofermentans ISDg hypothetical protein YP_001558995.1 2329767 D 357809 CDS YP_001558996.1 160880028 5744567 2332943..2334793 1 NC_010001.1 KEGG: cth:Cthe_2179 pectate lyase/Amb allergen; hypothetical protein 2334793 5744567 Cphy_1888 Clostridium phytofermentans ISDg hypothetical protein YP_001558996.1 2332943 D 357809 CDS YP_001558997.1 160880029 5744568 complement(2335316..2336311) 1 NC_010001.1 PFAM: Ig domain protein group 2 domain protein; KEGG: chu:CHU_1335 CHU large protein; endoglucanase-related protein, glucosyl hydrolase family 9 protein; Ig domain-containing protein 2336311 5744568 Cphy_1889 Clostridium phytofermentans ISDg Ig domain-containing protein YP_001558997.1 2335316 R 357809 CDS YP_001558998.1 160880030 5744569 2336694..2337233 1 NC_010001.1 hypothetical protein 2337233 5744569 Cphy_1890 Clostridium phytofermentans ISDg hypothetical protein YP_001558998.1 2336694 D 357809 CDS YP_001558999.1 160880031 5744570 2337238..2338230 1 NC_010001.1 PFAM: PT repeat-containing protein; KEGG: pfa:PFF0385c hypothetical protein; PT repeat-containing protein 2338230 5744570 Cphy_1891 Clostridium phytofermentans ISDg PT repeat-containing protein YP_001558999.1 2337238 D 357809 CDS YP_001559000.1 160880032 5744571 2338471..2339646 1 NC_010001.1 PFAM: Monogalactosyldiacylglycerol synthase; KEGG: cpf:CPF_0710 monogalactosyldiacylglycerol synthase; monogalactosyldiacylglycerol synthase 2339646 5744571 Cphy_1892 Clostridium phytofermentans ISDg monogalactosyldiacylglycerol synthase YP_001559000.1 2338471 D 357809 CDS YP_001559001.1 160880033 5744572 2339627..2340271 1 NC_010001.1 PFAM: protein of unknown function DUF205; KEGG: fnu:FN0537 hypothetical membrane-spanning protein; hypothetical protein 2340271 5744572 Cphy_1893 Clostridium phytofermentans ISDg hypothetical protein YP_001559001.1 2339627 D 357809 CDS YP_001559002.1 160880034 5744573 2340490..2341062 1 NC_010001.1 PFAM: cyclase family protein; KEGG: gur:Gura_0174 cyclase family protein; cyclase family protein 2341062 5744573 Cphy_1894 Clostridium phytofermentans ISDg cyclase family protein YP_001559002.1 2340490 D 357809 CDS YP_001559003.1 160880035 5744574 2341078..2341467 1 NC_010001.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cbe:Cbei_0463 hemerythrin-like metal-binding protein; hemerythrin-like metal-binding protein 2341467 5744574 Cphy_1895 Clostridium phytofermentans ISDg hemerythrin-like metal-binding protein YP_001559003.1 2341078 D 357809 CDS YP_001559004.1 160880036 5744575 2342291..2342512 1 NC_010001.1 KEGG: mhu:Mhun_2065 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2342512 5744575 Cphy_1896 Clostridium phytofermentans ISDg FAD dependent oxidoreductase YP_001559004.1 2342291 D 357809 CDS YP_001559005.1 160880037 5744576 2342552..2342944 1 NC_010001.1 hypothetical protein 2342944 5744576 Cphy_1897 Clostridium phytofermentans ISDg hypothetical protein YP_001559005.1 2342552 D 357809 CDS YP_001559006.1 160880038 5744577 2342968..2343189 1 NC_010001.1 hypothetical protein 2343189 5744577 Cphy_1898 Clostridium phytofermentans ISDg hypothetical protein YP_001559006.1 2342968 D 357809 CDS YP_001559007.1 160880039 5744578 2343248..2344012 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cdf:CD3121 flavodoxin; 4Fe-4S ferredoxin 2344012 5744578 Cphy_1899 Clostridium phytofermentans ISDg 4Fe-4S ferredoxin YP_001559007.1 2343248 D 357809 CDS YP_001559008.1 160880040 5744579 complement(2344104..2344670) 1 NC_010001.1 PFAM: Phosphoglycerate mutase; KEGG: amt:Amet_2630 phosphoglycerate mutase; phosphoglycerate mutase 2344670 5744579 Cphy_1900 Clostridium phytofermentans ISDg phosphoglycerate mutase YP_001559008.1 2344104 R 357809 CDS YP_001559009.1 160880041 5744580 2345177..2345689 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbe:Cbei_3065 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2345689 5744580 Cphy_1901 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001559009.1 2345177 D 357809 CDS YP_001559010.1 160880042 5744581 2345729..2346607 1 NC_010001.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ckl:CKL_2381 predicted transcriptional regulator; LysR family transcriptional regulator 2346607 5744581 Cphy_1902 Clostridium phytofermentans ISDg LysR family transcriptional regulator YP_001559010.1 2345729 D 357809 CDS YP_001559011.1 160880043 5744582 complement(2346604..2347164) 1 NC_010001.1 PFAM: Chromate transporter; KEGG: bth:BT_1736 chromate transport protein; chromate transporter 2347164 5744582 Cphy_1903 Clostridium phytofermentans ISDg chromate transporter YP_001559011.1 2346604 R 357809 CDS YP_001559012.1 160880044 5744583 complement(2347161..2347772) 1 NC_010001.1 PFAM: Chromate transporter; KEGG: ctc:CTC00660 chromate transport protein; chromate transporter 2347772 5744583 Cphy_1904 Clostridium phytofermentans ISDg chromate transporter YP_001559012.1 2347161 R 357809 CDS YP_001559013.1 160880045 5744584 2348023..2348664 1 NC_010001.1 PFAM: protein of unknown function DUF1121; KEGG: ckl:CKL_1828 hypothetical protein; hypothetical protein 2348664 5744584 Cphy_1905 Clostridium phytofermentans ISDg hypothetical protein YP_001559013.1 2348023 D 357809 CDS YP_001559014.1 160880046 5744585 2348856..2349776 1 NC_010001.1 PFAM: Domain of unknown function DUF1848; KEGG: bth:BT_1910 hypothetical protein; hypothetical protein 2349776 5744585 Cphy_1906 Clostridium phytofermentans ISDg hypothetical protein YP_001559014.1 2348856 D 357809 CDS YP_001559015.1 160880047 5744586 2350016..2351425 1 NC_010001.1 PFAM: major facilitator superfamily MFS_1; KEGG: csc:Csac_2119 major facilitator superfamily MFS_1; major facilitator transporter 2351425 5744586 Cphy_1907 Clostridium phytofermentans ISDg major facilitator transporter YP_001559015.1 2350016 D 357809 CDS YP_001559016.1 160880048 5744587 complement(2351801..2353729) 1 NC_010001.1 KEGG: cth:Cthe_1481 membrane protein-like protein; membrane protein-like protein 2353729 5744587 Cphy_1908 Clostridium phytofermentans ISDg membrane protein-like protein YP_001559016.1 2351801 R 357809 CDS YP_001559017.1 160880049 5744588 complement(2353743..2355821) 1 NC_010001.1 KEGG: cth:Cthe_1480 hypothetical protein; hypothetical protein 2355821 5744588 Cphy_1909 Clostridium phytofermentans ISDg hypothetical protein YP_001559017.1 2353743 R 357809 CDS YP_001559018.1 160880050 5744589 2356046..2356669 1 NC_010001.1 PFAM: regulatory protein TetR; KEGG: cbh:CLC_3223 transcriptional regulator, TetR family; TetR family transcriptional regulator 2356669 5744589 Cphy_1910 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001559018.1 2356046 D 357809 CDS YP_001559019.1 160880051 5744590 2356960..2358816 1 NC_010001.1 KEGG: mvn:Mevan_0087 superfamily I DNA and RNA helicase and helicase subunits-like protein; hypothetical protein 2358816 5744590 Cphy_1911 Clostridium phytofermentans ISDg hypothetical protein YP_001559019.1 2356960 D 357809 CDS YP_001559020.1 160880052 5744591 2358995..2360608 1 NC_010001.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gur:Gura_1785 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 2360608 5744591 Cphy_1912 Clostridium phytofermentans ISDg apolipoprotein N-acyltransferase YP_001559020.1 2358995 D 357809 CDS YP_001559021.1 160880053 5744592 2360855..2361139 1 NC_010001.1 hypothetical protein 2361139 5744592 Cphy_1913 Clostridium phytofermentans ISDg hypothetical protein YP_001559021.1 2360855 D 357809 CDS YP_001559022.1 160880054 5744593 2361132..2362028 1 NC_010001.1 hypothetical protein 2362028 5744593 Cphy_1914 Clostridium phytofermentans ISDg hypothetical protein YP_001559022.1 2361132 D 357809 CDS YP_001559023.1 160880055 5744594 2362169..2364496 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: csc:Csac_2727 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 2364496 5744594 Cphy_1915 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001559023.1 2362169 D 357809 CDS YP_001559024.1 160880056 5744595 2364818..2365780 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi03166 membrane protein; RBL03398; binding-protein-dependent transport system inner membrane protein 2365780 5744595 Cphy_1916 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001559024.1 2364818 D 357809 CDS YP_001559025.1 160880057 5744596 2365793..2366710 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BG11788 multiple sugar transport system permease; binding-protein-dependent transport systems inner membrane component 2366710 5744596 Cphy_1917 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001559025.1 2365793 D 357809 CDS YP_001559026.1 160880058 5744597 2366768..2368441 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH0482 lipoprotein; extracellular solute-binding protein 2368441 5744597 Cphy_1918 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001559026.1 2366768 D 357809 CDS YP_001559027.1 160880059 5744598 2369079..2370116 1 NC_010001.1 PFAM: glycosyl hydrolase family 88; KEGG: bsu:BG12852 similar to hypothetical proteins; glycosyl hydrolase family protein 2370116 5744598 Cphy_1919 Clostridium phytofermentans ISDg glycosyl hydrolase family protein YP_001559027.1 2369079 D 357809 CDS YP_001559028.1 160880060 5744599 2370232..2372400 1 NC_010001.1 PFAM: conserved hypothetical protein; KEGG: cpr:CPR_0537 conserved hypothetical protein TIGR02336; hypothetical protein 2372400 5744599 Cphy_1920 Clostridium phytofermentans ISDg hypothetical protein YP_001559028.1 2370232 D 357809 CDS YP_001559029.1 160880061 5744600 2372501..2372746 1 NC_010001.1 hypothetical protein 2372746 5744600 Cphy_1921 Clostridium phytofermentans ISDg hypothetical protein YP_001559029.1 2372501 D 357809 CDS YP_001559030.1 160880062 5744601 2373128..2374690 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1451 ABC transporter related; ABC transporter 2374690 5744601 Cphy_1922 Clostridium phytofermentans ISDg ABC transporter YP_001559030.1 2373128 D 357809 CDS YP_001559031.1 160880063 5744602 2375371..2376411 1 NC_010001.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pdi:BDI_1057 dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 2376411 5744602 Cphy_1923 Clostridium phytofermentans ISDg D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit YP_001559031.1 2375371 D 357809 CDS YP_001559032.1 160880064 5744603 2376426..2376812 1 NC_010001.1 PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin); desulfoferrodoxin ferrous iron-binding region 2376812 5744603 Cphy_1924 Clostridium phytofermentans ISDg desulfoferrodoxin ferrous iron-binding region YP_001559032.1 2376426 D 357809 CDS YP_001559033.1 160880065 5744604 complement(2377225..2378367) 1 NC_010001.1 KEGG: lca:LSEI_1862 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; sodium ion-translocating decarboxylase subunit beta 2378367 5744604 Cphy_1925 Clostridium phytofermentans ISDg sodium ion-translocating decarboxylase subunit beta YP_001559033.1 2377225 R 357809 CDS YP_001559034.1 160880066 5744606 2379565..2380857 1 NC_010001.1 PFAM: cation transporter; KEGG: cpf:CPF_2143 potassium uptake protein, TrkH family; H(+)-transporting two-sector ATPase 2380857 5744606 Cphy_1927 Clostridium phytofermentans ISDg H(+)-transporting two-sector ATPase YP_001559034.1 2379565 D 357809 CDS YP_001559035.1 160880067 5744607 2380934..2381605 1 NC_010001.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: chy:CHY_1574 potassium uptake protein KtrA; TrkA domain-containing protein 2381605 5744607 Cphy_1928 Clostridium phytofermentans ISDg TrkA domain-containing protein YP_001559035.1 2380934 D 357809 CDS YP_001559036.1 160880068 5744608 complement(2382327..2384720) 1 NC_010001.1 PFAM: carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: csc:Csac_1090 glycosyltransferase 36; glycosyltransferase 2384720 5744608 Cphy_1929 Clostridium phytofermentans ISDg glycosyltransferase YP_001559036.1 2382327 R 357809 CDS YP_001559037.1 160880069 5744609 2385034..2385786 1 NC_010001.1 TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: amt:Amet_4016 toxin secretion/phage lysis holin; toxin secretion/phage lysis holin 2385786 5744609 Cphy_1930 Clostridium phytofermentans ISDg toxin secretion/phage lysis holin YP_001559037.1 2385034 D 357809 CDS YP_001559038.1 160880070 5744610 complement(2385890..2387113) 1 NC_010001.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 2387113 5744610 Cphy_1931 Clostridium phytofermentans ISDg argininosuccinate synthase YP_001559038.1 2385890 R 357809 CDS YP_001559039.1 160880071 5744611 2387374..2388042 1 NC_010001.1 KEGG: ckl:CKL_2512 predicted phosphatase; phosphatase 2388042 5744611 Cphy_1932 Clostridium phytofermentans ISDg phosphatase YP_001559039.1 2387374 D 357809 CDS YP_001559040.1 160880072 5744612 2388158..2388751 1 NC_010001.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: bce:BC4462 septum formation protein Maf; maf protein 2388751 5744612 Cphy_1933 Clostridium phytofermentans ISDg maf protein YP_001559040.1 2388158 D 357809 CDS YP_001559041.1 160880073 5744613 complement(2388859..2390790) 1 NC_010001.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: csc:Csac_2428 alpha amylase, catalytic region; alpha amylase 2390790 5744613 Cphy_1934 Clostridium phytofermentans ISDg alpha amylase YP_001559041.1 2388859 R 357809 CDS YP_001559042.1 160880074 5744614 complement(2390872..2392257) 1 NC_010001.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: tde:TDE1454 sugar transporter; sugar (glycoside-Pentoside-hexuronide) transporter 2392257 5744614 Cphy_1935 Clostridium phytofermentans ISDg sugar (glycoside-Pentoside-hexuronide) transporter YP_001559042.1 2390872 R 357809 CDS YP_001559043.1 160880075 5744615 complement(2392257..2394713) 1 NC_010001.1 PFAM: glycoside hydrolase clan GH-D; KEGG: tde:TDE1453 alpha-galactosidase; glycoside hydrolase clan GH-D 2394713 5744615 Cphy_1936 Clostridium phytofermentans ISDg glycoside hydrolase clan GH-D YP_001559043.1 2392257 R 357809 CDS YP_001559044.1 160880076 5744616 complement(2394710..2395993) 1 NC_010001.1 PFAM: glycoside hydrolase family 1; KEGG: tde:TDE1882 glycosyl hydrolase, family 1; glycoside hydrolase family protein 2395993 5744616 Cphy_1937 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001559044.1 2394710 R 357809 CDS YP_001559045.1 160880077 5744617 complement(2396275..2396475) 1 NC_010001.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sae:NWMN_2605 cold shock protein CspB; cold-shock DNA-binding domain-containing protein 2396475 5744617 Cphy_1938 Clostridium phytofermentans ISDg cold-shock DNA-binding domain-containing protein YP_001559045.1 2396275 R 357809 CDS YP_001559046.1 160880078 5744618 2397078..2397308 1 NC_010001.1 hypothetical protein 2397308 5744618 Cphy_1939 Clostridium phytofermentans ISDg hypothetical protein YP_001559046.1 2397078 D 357809 CDS YP_001559047.1 160880079 5744619 2397716..2398444 1 NC_010001.1 PFAM: SCP-like extracellular; KEGG: cdf:CD2681 calcium-chelating exported protein; SCP-like extracellular 2398444 5744619 Cphy_1940 Clostridium phytofermentans ISDg SCP-like extracellular YP_001559047.1 2397716 D 357809 CDS YP_001559048.1 160880080 5744620 2398748..2399455 1 NC_010001.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: cbe:Cbei_0579 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2399455 5744620 Cphy_1941 Clostridium phytofermentans ISDg phospholipid/glycerol acyltransferase YP_001559048.1 2398748 D 357809 CDS YP_001559049.1 160880081 5744621 2399570..2399968 1 NC_010001.1 KEGG: dsy:DSY4335 hypothetical protein; hypothetical protein 2399968 5744621 Cphy_1942 Clostridium phytofermentans ISDg hypothetical protein YP_001559049.1 2399570 D 357809 CDS YP_001559050.1 160880082 5744622 complement(2400010..2401404) 1 NC_010001.1 PFAM: glycoside hydrolase family 19; KEGG: ath:AT1G02360 chitinase; chitinase 2401404 5744622 Cphy_1943 Clostridium phytofermentans ISDg chitinase YP_001559050.1 2400010 R 357809 CDS YP_001559051.1 160880083 5744623 complement(2402148..2402717) 1 NC_010001.1 KEGG: cbe:Cbei_4715 hypothetical protein; hypothetical protein 2402717 5744623 Cphy_1944 Clostridium phytofermentans ISDg hypothetical protein YP_001559051.1 2402148 R 357809 CDS YP_001559052.1 160880084 5744624 2402848..2403159 1 NC_010001.1 hypothetical protein 2403159 5744624 Cphy_1945 Clostridium phytofermentans ISDg hypothetical protein YP_001559052.1 2402848 D 357809 CDS YP_001559053.1 160880085 5744625 2403312..2403665 1 NC_010001.1 hypothetical protein 2403665 5744625 Cphy_1946 Clostridium phytofermentans ISDg hypothetical protein YP_001559053.1 2403312 D 357809 CDS YP_001559054.1 160880086 5744626 complement(2403747..2404271) 1 NC_010001.1 hypothetical protein 2404271 5744626 Cphy_1947 Clostridium phytofermentans ISDg hypothetical protein YP_001559054.1 2403747 R 357809 CDS YP_001559055.1 160880087 5744627 2404814..2405854 1 NC_010001.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 2405854 argC 5744627 argC Clostridium phytofermentans ISDg N-acetyl-gamma-glutamyl-phosphate reductase YP_001559055.1 2404814 D 357809 CDS YP_001559056.1 160880088 5744628 2406002..2407222 1 NC_010001.1 KEGG: tpt:Tpet_1070 arginine biosynthesis bifunctional protein ArgJ; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; arginine biosynthesis bifunctional protein ArgJ 2407222 5744628 Cphy_1949 Clostridium phytofermentans ISDg arginine biosynthesis bifunctional protein ArgJ YP_001559056.1 2406002 D 357809 CDS YP_001559057.1 160880089 5744629 2407322..2408224 1 NC_010001.1 KEGG: cje:Cj0226 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; acetylglutamate kinase 2408224 5744629 Cphy_1950 Clostridium phytofermentans ISDg acetylglutamate kinase YP_001559057.1 2407322 D 357809 CDS YP_001559058.1 160880090 5744630 2408227..2409423 1 NC_010001.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: cju:C8J_0205 acetylornithine aminotransferase; acetylornithine and succinylornithine aminotransferase 2409423 5744630 Cphy_1951 Clostridium phytofermentans ISDg acetylornithine and succinylornithine aminotransferase YP_001559058.1 2408227 D 357809 CDS YP_001559059.1 160880091 5744631 2409783..2410220 1 NC_010001.1 PFAM: protein of unknown function DUF606; KEGG: cbe:Cbei_5065 protein of unknown function DUF606; hypothetical protein 2410220 5744631 Cphy_1952 Clostridium phytofermentans ISDg hypothetical protein YP_001559059.1 2409783 D 357809 CDS YP_001559060.1 160880092 5744632 2410384..2411100 1 NC_010001.1 KEGG: csc:Csac_1821 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; helix-hairpin-helix repeat-containing competence protein ComEA 2411100 5744632 Cphy_1953 Clostridium phytofermentans ISDg helix-hairpin-helix repeat-containing competence protein ComEA YP_001559060.1 2410384 D 357809 CDS YP_001559061.1 160880093 5744633 2411187..2411876 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amt:Amet_2325 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2411876 5744633 Cphy_1954 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001559061.1 2411187 D 357809 CDS YP_001559062.1 160880094 5744634 2411833..2413287 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: amt:Amet_2326 histidine kinase; integral membrane sensor signal transduction histidine kinase 2413287 5744634 Cphy_1955 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001559062.1 2411833 D 357809 CDS YP_001559063.1 160880095 5744635 2413339..2414268 1 NC_010001.1 KEGG: cth:Cthe_2543 spore germination protein-like protein; hypothetical protein 2414268 5744635 Cphy_1956 Clostridium phytofermentans ISDg hypothetical protein YP_001559063.1 2413339 D 357809 CDS YP_001559064.1 160880096 5744636 2414887..2417577 1 NC_010001.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; KEGG: bce:BC4322 ComE operon protein 3; DNA internalization-related competence protein ComEC/Rec2 2417577 5744636 Cphy_1957 Clostridium phytofermentans ISDg DNA internalization-related competence protein ComEC/Rec2 YP_001559064.1 2414887 D 357809 CDS YP_001559065.1 160880097 5744637 2418081..2419013 1 NC_010001.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: tde:TDE1034 magnesium and cobalt transporter; Mg2 transporter protein CorA family protein 2419013 5744637 Cphy_1958 Clostridium phytofermentans ISDg Mg2 transporter protein CorA family protein YP_001559065.1 2418081 D 357809 CDS YP_001559066.1 160880098 5744638 2419168..2420232 1 NC_010001.1 PFAM: conserved hypothetical protein; KEGG: cdf:CD2723 hypothetical protein; hypothetical protein 2420232 5744638 Cphy_1959 Clostridium phytofermentans ISDg hypothetical protein YP_001559066.1 2419168 D 357809 CDS YP_001559067.1 160880099 5744639 2420216..2420839 1 NC_010001.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cac:CAC0798 phosphatidylserine synthase; CDP-alcohol phosphatidyltransferase 2420839 5744639 Cphy_1960 Clostridium phytofermentans ISDg CDP-alcohol phosphatidyltransferase YP_001559067.1 2420216 D 357809 CDS YP_001559068.1 160880100 5744640 2421004..2421870 1 NC_010001.1 PFAM: phosphatidylserine decarboxylase-related; KEGG: cac:CAC0799 phosphatidylserine decarboxylase; phosphatidylserine decarboxylase 2421870 5744640 Cphy_1961 Clostridium phytofermentans ISDg phosphatidylserine decarboxylase YP_001559068.1 2421004 D 357809 CDS YP_001559069.1 160880101 5744641 2421915..2422892 1 NC_010001.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: cth:Cthe_1040 DNA polymerase III, delta subunit; DNA polymerase III subunit delta 2422892 5744641 Cphy_1962 Clostridium phytofermentans ISDg DNA polymerase III subunit delta YP_001559069.1 2421915 D 357809 CDS YP_001559070.1 160880102 5744642 2423286..2423597 1 NC_010001.1 PFAM: transcriptional regulator PadR family protein; KEGG: gtn:GTNG_0307 predicted transcriptional regulator; PadR-like family transcriptional regulator 2423597 5744642 Cphy_1963 Clostridium phytofermentans ISDg PadR-like family transcriptional regulator YP_001559070.1 2423286 D 357809 CDS YP_001559071.1 160880103 5744643 2423677..2424645 1 NC_010001.1 hypothetical protein 2424645 5744643 Cphy_1964 Clostridium phytofermentans ISDg hypothetical protein YP_001559071.1 2423677 D 357809 CDS YP_001559072.1 160880104 5744644 2424758..2426128 1 NC_010001.1 KEGG: tde:TDE1859 hypothetical protein; hypothetical protein 2426128 5744644 Cphy_1965 Clostridium phytofermentans ISDg hypothetical protein YP_001559072.1 2424758 D 357809 CDS YP_001559073.1 160880105 5744645 complement(2426619..2427266) 1 NC_010001.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mac:MA1248 UbiE/COQ5 methyltransferase; methyltransferase type 11 2427266 5744645 Cphy_1966 Clostridium phytofermentans ISDg methyltransferase type 11 YP_001559073.1 2426619 R 357809 CDS YP_001559074.1 160880106 5744647 2427815..2428621 1 NC_010001.1 PFAM: helix-turn-helix domain protein; KEGG: dsy:DSY1949 hypothetical protein; XRE family transcriptional regulator 2428621 5744647 Cphy_1967 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001559074.1 2427815 D 357809 CDS YP_001559075.1 160880107 5744648 2429017..2430558 1 NC_010001.1 PFAM: von Willebrand factor type A; KEGG: bra:BRADO1313 hypothetical protein; signal peptide; von Willebrand factor type A 2430558 5744648 Cphy_1968 Clostridium phytofermentans ISDg von Willebrand factor type A YP_001559075.1 2429017 D 357809 CDS YP_001559076.1 160880108 5744649 2430571..2431221 1 NC_010001.1 KEGG: cdf:CD2337 hypothetical protein; hypothetical protein 2431221 5744649 Cphy_1969 Clostridium phytofermentans ISDg hypothetical protein YP_001559076.1 2430571 D 357809 CDS YP_001559077.1 160880109 5744650 2431218..2432318 1 NC_010001.1 KEGG: bra:BRADO1315 hypothetical protein; signal peptide; hypothetical protein 2432318 5744650 Cphy_1970 Clostridium phytofermentans ISDg hypothetical protein YP_001559077.1 2431218 D 357809 CDS YP_001559078.1 160880110 5744651 2432490..2433596 1 NC_010001.1 PFAM: toxic anion resistance family protein; KEGG: cbe:Cbei_0754 toxic anion resistance family protein; toxic anion resistance family protein 2433596 5744651 Cphy_1971 Clostridium phytofermentans ISDg toxic anion resistance family protein YP_001559078.1 2432490 D 357809 CDS YP_001559079.1 160880111 5744652 complement(2433740..2434666) 1 NC_010001.1 PFAM: protein of unknown function DUF362; KEGG: drm:Dred_1308 protein of unknown function DUF362; hypothetical protein 2434666 5744652 Cphy_1972 Clostridium phytofermentans ISDg hypothetical protein YP_001559079.1 2433740 R 357809 CDS YP_001559080.1 160880112 5744653 2434856..2435425 1 NC_010001.1 PFAM: ThiJ/PfpI domain protein; KEGG: cbe:Cbei_3829 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 2435425 5744653 Cphy_1973 Clostridium phytofermentans ISDg ThiJ/PfpI domain-containing protein YP_001559080.1 2434856 D 357809 CDS YP_001559081.1 160880113 5744654 2435446..2435997 1 NC_010001.1 PFAM: nitroreductase; KEGG: cbe:Cbei_3418 nitroreductase; nitroreductase 2435997 5744654 Cphy_1974 Clostridium phytofermentans ISDg nitroreductase YP_001559081.1 2435446 D 357809 CDS YP_001559082.1 160880114 5744655 2436461..2438653 1 NC_010001.1 PFAM: Ig domain protein group 2 domain protein; KEGG: tva:TVAG_154640 surface antigen BspA-like Pfam: FNIP Pentapeptide_2 PROSITE: SER_RICH; Ig domain-containing protein 2438653 5744655 Cphy_1975 Clostridium phytofermentans ISDg Ig domain-containing protein YP_001559082.1 2436461 D 357809 CDS YP_001559083.1 160880115 5744656 complement(2438851..2440587) 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: amt:Amet_0582 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2440587 5744656 Cphy_1976 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001559083.1 2438851 R 357809 CDS YP_001559084.1 160880116 5744657 complement(2441154..2441819) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbf:CLI_1432 ABC transporter, ATP-binding protein; ABC transporter 2441819 5744657 Cphy_1977 Clostridium phytofermentans ISDg ABC transporter YP_001559084.1 2441154 R 357809 CDS YP_001559085.1 160880117 5744658 complement(2441824..2443179) 1 NC_010001.1 PFAM: protein of unknown function DUF214; KEGG: cbf:CLI_1431 ABC transporter, permease; hypothetical protein 2443179 5744658 Cphy_1978 Clostridium phytofermentans ISDg hypothetical protein YP_001559085.1 2441824 R 357809 CDS YP_001559086.1 160880118 5744659 complement(2443730..2444152) 1 NC_010001.1 PFAM: regulatory protein MarR; KEGG: cbf:CLI_2873 transcriptional regulator, MarR family; MarR family transcriptional regulator 2444152 5744659 Cphy_1979 Clostridium phytofermentans ISDg MarR family transcriptional regulator YP_001559086.1 2443730 R 357809 CDS YP_001559087.1 160880119 5744660 complement(2444163..2446424) 1 NC_010001.1 PFAM: ABC transporter related; KEGG: cac:CAC1464 UvrA-like protein, probably involved in MDR transport; ABC transporter 2446424 5744660 Cphy_1980 Clostridium phytofermentans ISDg ABC transporter YP_001559087.1 2444163 R 357809 CDS YP_001559088.1 160880120 5744661 2447051..2447947 1 NC_010001.1 PFAM: 5-nucleotidase; KEGG: har:HEAR0649 5'-nucleotidase; 5'-nucleotidase 2447947 5744661 Cphy_1981 Clostridium phytofermentans ISDg 5'-nucleotidase YP_001559088.1 2447051 D 357809 CDS YP_001559089.1 160880121 5744662 2448335..2449126 1 NC_010001.1 KEGG: cbh:CLC_2688 hypothetical protein; hypothetical protein 2449126 5744662 Cphy_1982 Clostridium phytofermentans ISDg hypothetical protein YP_001559089.1 2448335 D 357809 CDS YP_001559090.1 160880122 5744663 2449368..2450339 1 NC_010001.1 KEGG: cbf:CLI_1052 hypothetical protein; hypothetical protein 2450339 5744663 Cphy_1983 Clostridium phytofermentans ISDg hypothetical protein YP_001559090.1 2449368 D 357809 CDS YP_001559091.1 160880123 5744664 2450413..2451300 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_1022 ABC transporter, ATP-binding protein; ABC transporter 2451300 5744664 Cphy_1984 Clostridium phytofermentans ISDg ABC transporter YP_001559091.1 2450413 D 357809 CDS YP_001559092.1 160880124 5744665 2451303..2452067 1 NC_010001.1 KEGG: cbh:CLC_1023 hypothetical protein; hypothetical protein 2452067 5744665 Cphy_1985 Clostridium phytofermentans ISDg hypothetical protein YP_001559092.1 2451303 D 357809 CDS YP_001559093.1 160880125 5744666 2452455..2453177 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: amt:Amet_1691 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2453177 5744666 Cphy_1986 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001559093.1 2452455 D 357809 CDS YP_001559094.1 160880126 5744667 2453174..2454580 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: amt:Amet_1692 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2454580 5744667 Cphy_1987 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001559094.1 2453174 D 357809 CDS YP_001559095.1 160880127 5744668 2455089..2456153 1 NC_010001.1 KEGG: tde:TDE0371 hypothetical protein; hypothetical protein 2456153 5744668 Cphy_1988 Clostridium phytofermentans ISDg hypothetical protein YP_001559095.1 2455089 D 357809 CDS YP_001559096.1 160880128 5744669 2456203..2456505 1 NC_010001.1 hypothetical protein 2456505 5744669 Cphy_1989 Clostridium phytofermentans ISDg hypothetical protein YP_001559096.1 2456203 D 357809 CDS YP_001559097.1 160880129 5744670 2456659..2457690 1 NC_010001.1 KEGG: bat:BAS2632 hypothetical protein; hypothetical protein 2457690 5744670 Cphy_1990 Clostridium phytofermentans ISDg hypothetical protein YP_001559097.1 2456659 D 357809 CDS YP_001559098.1 160880130 5744671 2457833..2458630 1 NC_010001.1 KEGG: dsy:DSY1009 hypothetical protein; hypothetical protein 2458630 5744671 Cphy_1991 Clostridium phytofermentans ISDg hypothetical protein YP_001559098.1 2457833 D 357809 CDS YP_001559099.1 160880131 5744672 2458916..2459146 1 NC_010001.1 hypothetical protein 2459146 5744672 Cphy_1992 Clostridium phytofermentans ISDg hypothetical protein YP_001559099.1 2458916 D 357809 CDS YP_001559100.1 160880132 5744673 2459165..2459344 1 NC_010001.1 hypothetical protein 2459344 5744673 Cphy_1993 Clostridium phytofermentans ISDg hypothetical protein YP_001559100.1 2459165 D 357809 CDS YP_001559101.1 160880133 5744674 2459615..2461003 1 NC_010001.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cbe:Cbei_3030 radical SAM domain protein; radical SAM domain-containing protein 2461003 5744674 Cphy_1994 Clostridium phytofermentans ISDg radical SAM domain-containing protein YP_001559101.1 2459615 D 357809 CDS YP_001559102.1 160880134 5744675 2460981..2463056 1 NC_010001.1 KEGG: mac:MA4292 cell surface protein; hypothetical protein 2463056 5744675 Cphy_1995 Clostridium phytofermentans ISDg hypothetical protein YP_001559102.1 2460981 D 357809 CDS YP_001559103.1 160880135 5744676 2463267..2464184 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1865 hypothetical protein; binding-protein-dependent transport systems inner membrane component 2464184 5744676 Cphy_1996 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001559103.1 2463267 D 357809 CDS YP_001559104.1 160880136 5744677 2464200..2465246 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1864 hypothetical protein; binding-protein-dependent transport system inner membrane protein 2465246 5744677 Cphy_1997 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001559104.1 2464200 D 357809 CDS YP_001559105.1 160880137 5744678 2465263..2466264 1 NC_010001.1 KEGG: dsy:DSY1863 hypothetical protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2466264 5744678 Cphy_1998 Clostridium phytofermentans ISDg oligopeptide/dipeptide ABC transporter ATPase YP_001559105.1 2465263 D 357809 CDS YP_001559106.1 160880138 5743027 2466257..2467246 1 NC_010001.1 KEGG: dsy:DSY1862 hypothetical protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2467246 5743027 Cphy_1999 Clostridium phytofermentans ISDg oligopeptide/dipeptide ABC transporter ATPase YP_001559106.1 2466257 D 357809 CDS YP_001559107.1 160880139 5743028 2467518..2469170 1 NC_010001.1 PFAM: extracellular solute-binding protein family 5; KEGG: dsy:DSY1861 hypothetical protein; extracellular solute-binding protein 2469170 5743028 Cphy_2000 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001559107.1 2467518 D 357809 CDS YP_001559108.1 160880140 5743029 2469662..2471206 1 NC_010001.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bfs:BF1668 ATP-dependent RNA helicase; DEAD/DEAH box helicase 2471206 5743029 Cphy_2001 Clostridium phytofermentans ISDg DEAD/DEAH box helicase YP_001559108.1 2469662 D 357809 CDS YP_001559109.1 160880141 5743030 2471352..2471648 1 NC_010001.1 PFAM: YCII-related; KEGG: cpf:CPF_0987 hypothetical protein; hypothetical protein 2471648 5743030 Cphy_2002 Clostridium phytofermentans ISDg hypothetical protein YP_001559109.1 2471352 D 357809 CDS YP_001559110.1 160880142 5743031 complement(2471732..2472706) 1 NC_010001.1 PFAM: NLP/P60 protein; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: cdf:CD2402 cell wall hydrolase; NLP/P60 protein 2472706 5743031 Cphy_2003 Clostridium phytofermentans ISDg NLP/P60 protein YP_001559110.1 2471732 R 357809 CDS YP_001559111.1 160880143 5743032 2473107..2474444 1 NC_010001.1 hypothetical protein 2474444 5743032 Cphy_2004 Clostridium phytofermentans ISDg hypothetical protein YP_001559111.1 2473107 D 357809 CDS YP_001559112.1 160880144 5743033 complement(2474846..2475289) 1 NC_010001.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: lbu:LBUL_0275 large-conductance mechanosensitive channel; large conductance mechanosensitive channel protein 2475289 5743033 Cphy_2005 Clostridium phytofermentans ISDg large conductance mechanosensitive channel protein YP_001559112.1 2474846 R 357809 CDS YP_001559113.1 160880145 5743034 2475500..2476951 1 NC_010001.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bca:BCE_5592 ATP-dependent RNA helicase, DEAD/DEAH box family; DEAD/DEAH box helicase 2476951 5743034 Cphy_2006 Clostridium phytofermentans ISDg DEAD/DEAH box helicase YP_001559113.1 2475500 D 357809 CDS YP_001559114.1 160880146 5743035 2477436..2479025 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cbe:Cbei_4431 response regulator receiver protein; two component AraC family transcriptional regulator 2479025 5743035 Cphy_2007 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001559114.1 2477436 D 357809 CDS YP_001559115.1 160880147 5743036 2479036..2480793 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; Cache domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4430 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 2480793 5743036 Cphy_2008 Clostridium phytofermentans ISDg multi-sensor signal transduction histidine kinase YP_001559115.1 2479036 D 357809 CDS YP_001559116.1 160880148 5743037 2480821..2481798 1 NC_010001.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00907 D-ribose-binding periplasmic protein; periplasmic binding protein/LacI transcriptional regulator 2481798 5743037 Cphy_2009 Clostridium phytofermentans ISDg periplasmic binding protein/LacI transcriptional regulator YP_001559116.1 2480821 D 357809 CDS YP_001559117.1 160880149 5743038 2481937..2483439 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_C1350 ABC sugar transporter, fused ATPase subunits; ABC transporter 2483439 5743038 Cphy_2010 Clostridium phytofermentans ISDg ABC transporter YP_001559117.1 2481937 D 357809 CDS YP_001559118.1 160880150 5743039 2483454..2484440 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: vei:Veis_1087 inner-membrane translocator; monosaccharide-transporting ATPase 2484440 5743039 Cphy_2011 Clostridium phytofermentans ISDg monosaccharide-transporting ATPase YP_001559118.1 2483454 D 357809 CDS YP_001559119.1 160880151 5743040 2484588..2485658 1 NC_010001.1 KEGG: bch:Bcen2424_5037 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 2485658 5743040 Cphy_2012 Clostridium phytofermentans ISDg periplasmic binding protein/LacI transcriptional regulator YP_001559119.1 2484588 D 357809 CDS YP_001559120.1 160880152 5743041 2486327..2487589 1 NC_010001.1 PFAM: proteinase inhibitor I4 serpin; KEGG: tte:TTE1560 serine protease inhibitor; proteinase inhibitor I4 serpin 2487589 5743041 Cphy_2013 Clostridium phytofermentans ISDg proteinase inhibitor I4 serpin YP_001559120.1 2486327 D 357809 CDS YP_001559121.1 160880153 5743042 2487645..2488907 1 NC_010001.1 PFAM: proteinase inhibitor I4 serpin; KEGG: tte:TTE1560 serine protease inhibitor; proteinase inhibitor I4 serpin 2488907 5743042 Cphy_2014 Clostridium phytofermentans ISDg proteinase inhibitor I4 serpin YP_001559121.1 2487645 D 357809 CDS YP_001559122.1 160880154 5743043 2489645..2490706 1 NC_010001.1 KEGG: dsy:DSY1945 hypothetical protein; hypothetical protein 2490706 5743043 Cphy_2015 Clostridium phytofermentans ISDg hypothetical protein YP_001559122.1 2489645 D 357809 CDS YP_001559123.1 160880155 5743044 2490733..2490981 1 NC_010001.1 hypothetical protein 2490981 5743044 Cphy_2016 Clostridium phytofermentans ISDg hypothetical protein YP_001559123.1 2490733 D 357809 CDS YP_001559124.1 160880156 5743045 2491034..2491255 1 NC_010001.1 KEGG: bcz:BCZK0849 hypothetical protein; hypothetical protein 2491255 5743045 Cphy_2017 Clostridium phytofermentans ISDg hypothetical protein YP_001559124.1 2491034 D 357809 CDS YP_001559125.1 160880157 5743046 2491782..2492117 1 NC_010001.1 PFAM: transcriptional regulator PadR family protein; KEGG: dsy:DSY4371 hypothetical protein; PadR-like family transcriptional regulator 2492117 5743046 Cphy_2018 Clostridium phytofermentans ISDg PadR-like family transcriptional regulator YP_001559125.1 2491782 D 357809 CDS YP_001559126.1 160880158 5743047 2492244..2492759 1 NC_010001.1 KEGG: aha:AHA_2293 GAF domain protein; GAF domain-containing protein 2492759 5743047 Cphy_2019 Clostridium phytofermentans ISDg GAF domain-containing protein YP_001559126.1 2492244 D 357809 CDS YP_001559127.1 160880159 5743048 2493821..2495389 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3089 ABC transporter related; ABC transporter 2495389 5743048 Cphy_2020 Clostridium phytofermentans ISDg ABC transporter YP_001559127.1 2493821 D 357809 CDS YP_001559128.1 160880160 5743049 2495717..2496259 1 NC_010001.1 KEGG: ctc:CTC00156 hypothetical protein; hypothetical protein 2496259 5743049 Cphy_2021 Clostridium phytofermentans ISDg hypothetical protein YP_001559128.1 2495717 D 357809 CDS YP_001559129.1 160880161 5743050 2496351..2497169 1 NC_010001.1 PFAM: HhH-GPD family protein; 8-oxoguanine DNA glycosylase domain protein; KEGG: cdf:CD0191 DNA glycosylase (DNA repair protein); 8-oxoguanine DNA glycosylase 2497169 5743050 Cphy_2022 Clostridium phytofermentans ISDg 8-oxoguanine DNA glycosylase YP_001559129.1 2496351 D 357809 CDS YP_001559130.1 160880162 5743051 complement(2497270..2499246) 1 NC_010001.1 PFAM: band 7 protein; KEGG: mlo:mll0592 hypothetical protein; hypothetical protein 2499246 5743051 Cphy_2023 Clostridium phytofermentans ISDg hypothetical protein YP_001559130.1 2497270 R 357809 CDS YP_001559131.1 160880163 5743052 2499751..2500152 1 NC_010001.1 hypothetical protein 2500152 5743052 Cphy_2024 Clostridium phytofermentans ISDg hypothetical protein YP_001559131.1 2499751 D 357809 CDS YP_001559132.1 160880164 5743053 2500417..2502339 1 NC_010001.1 PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: lsa:LSA1711 beta-galactosidase, large subunit (lactase, large subunit); glycoside hydrolase family protein 2502339 5743053 Cphy_2025 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001559132.1 2500417 D 357809 CDS YP_001559133.1 160880165 5743054 2502320..2503300 1 NC_010001.1 PFAM: glycoside hydrolase family 42 domain 5 loop region; KEGG: lsa:LSA1710 beta-galactosidase, small subunit (lactase, small subunit); glycoside hydrolase family 42 2503300 5743054 Cphy_2026 Clostridium phytofermentans ISDg glycoside hydrolase family 42 YP_001559133.1 2502320 D 357809 CDS YP_001559134.1 160880166 5743055 2503558..2504571 1 NC_010001.1 PFAM: aldo/keto reductase; KEGG: sen:SACE_0624 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 2504571 5743055 Cphy_2027 Clostridium phytofermentans ISDg aldo/keto reductase YP_001559134.1 2503558 D 357809 CDS YP_001559135.1 160880167 5743056 2504770..2506266 1 NC_010001.1 PFAM: glycoside hydrolase family 43; Glycosyl hydrolase family 32 domain protein; KEGG: sco:SCO0118 xylosidase/arabinosidase; glycoside hydrolase family protein 2506266 5743056 Cphy_2028 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001559135.1 2504770 D 357809 CDS YP_001559136.1 160880168 5743057 2506576..2508747 1 NC_010001.1 KEGG: amt:Amet_3803 copper amine oxidase domain protein; hypothetical protein 2508747 5743057 Cphy_2029 Clostridium phytofermentans ISDg hypothetical protein YP_001559136.1 2506576 D 357809 CDS YP_001559137.1 160880169 5743058 2509222..2509998 1 NC_010001.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: csc:Csac_0990 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 2509998 5743058 Cphy_2030 Clostridium phytofermentans ISDg DeoR family transcriptional regulator YP_001559137.1 2509222 D 357809 CDS YP_001559138.1 160880170 5743059 2510093..2510728 1 NC_010001.1 PFAM: class II aldolase/adducin family protein; KEGG: chy:CHY_1555 L-fuculose phosphate aldolase; class II aldolase/adducin family protein 2510728 5743059 Cphy_2031 Clostridium phytofermentans ISDg class II aldolase/adducin family protein YP_001559138.1 2510093 D 357809 CDS YP_001559139.1 160880171 5743060 2510848..2511708 1 NC_010001.1 TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine phosphorylase family 2; KEGG: ctc:CTC01531 purine nucleoside phosphorylase I; inosine guanosine and xanthosine phosphorylase family protein 2511708 5743060 Cphy_2032 Clostridium phytofermentans ISDg inosine guanosine and xanthosine phosphorylase family protein YP_001559139.1 2510848 D 357809 CDS YP_001559140.1 160880172 5743061 2511875..2512939 1 NC_010001.1 KEGG: sth:STH2068 methylthioribose-1-phosphate isomerase; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; aIF-2BI family translation initiation factor 2512939 5743061 Cphy_2033 Clostridium phytofermentans ISDg aIF-2BI family translation initiation factor YP_001559140.1 2511875 D 357809 CDS YP_001559141.1 160880173 5743062 2513265..2514476 1 NC_010001.1 PFAM: basic membrane lipoprotein; KEGG: cpf:CPF_1832 lipoprotein, BMP family; basic membrane lipoprotein 2514476 5743062 Cphy_2034 Clostridium phytofermentans ISDg basic membrane lipoprotein YP_001559141.1 2513265 D 357809 CDS YP_001559142.1 160880174 5743063 2514729..2516273 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_1831 ABC transporter, ATP-binding protein; ABC transporter 2516273 5743063 Cphy_2035 Clostridium phytofermentans ISDg ABC transporter YP_001559142.1 2514729 D 357809 CDS YP_001559143.1 160880175 5743064 2516263..2517474 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: cpr:CPR_1550 ABC transporter (permeases)-like protein lmo1390; inner-membrane translocator 2517474 5743064 Cphy_2036 Clostridium phytofermentans ISDg inner-membrane translocator YP_001559143.1 2516263 D 357809 CDS YP_001559144.1 160880176 5743065 2517465..2518424 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: bcy:Bcer98_2440 inner-membrane translocator; inner-membrane translocator 2518424 5743065 Cphy_2037 Clostridium phytofermentans ISDg inner-membrane translocator YP_001559144.1 2517465 D 357809 CDS YP_001559145.1 160880177 5743066 2518593..2519861 1 NC_010001.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: tte:TTE1593 cytosine deaminase and related metal-dependent hydrolase; amidohydrolase 2519861 5743066 Cphy_2038 Clostridium phytofermentans ISDg amidohydrolase YP_001559145.1 2518593 D 357809 CDS YP_001559146.1 160880178 5743067 complement(2520050..2520970) 1 NC_010001.1 PFAM: regulatory protein MerR; KEGG: dsy:DSY0175 hypothetical protein; MerR family transcriptional regulator 2520970 5743067 Cphy_2039 Clostridium phytofermentans ISDg MerR family transcriptional regulator YP_001559146.1 2520050 R 357809 CDS YP_001559147.1 160880179 5743068 complement(2521069..2521269) 1 NC_010001.1 KEGG: ckl:CKL_1132 hypothetical protein; hypothetical protein 2521269 5743068 Cphy_2040 Clostridium phytofermentans ISDg hypothetical protein YP_001559147.1 2521069 R 357809 CDS YP_001559148.1 160880180 5743069 2521522..2522046 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pap:PSPA7_2796 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2522046 5743069 Cphy_2041 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001559148.1 2521522 D 357809 CDS YP_001559149.1 160880181 5743070 2522067..2522990 1 NC_010001.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: cbf:CLI_0810 transcriptional regulator; helix-turn-helix type 11 domain-containing protein 2522990 5743070 Cphy_2042 Clostridium phytofermentans ISDg helix-turn-helix type 11 domain-containing protein YP_001559149.1 2522067 D 357809 CDS YP_001559150.1 160880182 5743071 2523141..2523506 1 NC_010001.1 PFAM: Endoribonuclease L-PSP; KEGG: sph:MGAS10270_Spy1823 translation initiation inhibitor; endoribonuclease L-PSP 2523506 5743071 Cphy_2043 Clostridium phytofermentans ISDg endoribonuclease L-PSP YP_001559150.1 2523141 D 357809 CDS YP_001559151.1 160880183 5743072 2523737..2524729 1 NC_010001.1 PFAM: domain of unknown function DUF1730; KEGG: cpf:CPF_1527 iron-sulfur cluster-binding protein; hypothetical protein 2524729 5743072 Cphy_2044 Clostridium phytofermentans ISDg hypothetical protein YP_001559151.1 2523737 D 357809 CDS YP_001559152.1 160880184 5743073 2525098..2525718 1 NC_010001.1 hypothetical protein 2525718 5743073 Cphy_2045 Clostridium phytofermentans ISDg hypothetical protein YP_001559152.1 2525098 D 357809 CDS YP_001559153.1 160880185 5743074 2526021..2527352 1 NC_010001.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cbe:Cbei_4014 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2527352 5743074 Cphy_2046 Clostridium phytofermentans ISDg FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001559153.1 2526021 D 357809 CDS YP_001559154.1 160880186 5743075 2527488..2527835 1 NC_010001.1 KEGG: dsy:DSY3609 hypothetical protein; hypothetical protein 2527835 5743075 Cphy_2047 Clostridium phytofermentans ISDg hypothetical protein YP_001559154.1 2527488 D 357809 CDS YP_001559155.1 160880187 5743076 2528018..2528731 1 NC_010001.1 PFAM: protein of unknown function DUF434; KEGG: cbe:Cbei_1509 protein of unknown function DUF434; hypothetical protein 2528731 5743076 Cphy_2048 Clostridium phytofermentans ISDg hypothetical protein YP_001559155.1 2528018 D 357809 CDS YP_001559156.1 160880188 5743077 2529276..2531009 1 NC_010001.1 KEGG: cac:CAC0955 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 2531009 5743077 Cphy_2049 Clostridium phytofermentans ISDg ATP-dependent metalloprotease FtsH YP_001559156.1 2529276 D 357809 CDS YP_001559157.1 160880189 5743761 2531421..2532017 1 NC_010001.1 hypothetical protein 2532017 5743761 Cphy_2050 Clostridium phytofermentans ISDg hypothetical protein YP_001559157.1 2531421 D 357809 CDS YP_001559158.1 160880190 5743762 2532252..2532815 1 NC_010001.1 hypothetical protein 2532815 5743762 Cphy_2051 Clostridium phytofermentans ISDg hypothetical protein YP_001559158.1 2532252 D 357809 CDS YP_001559159.1 160880191 5743752 complement(2532924..2534393) 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: fnu:FN1896 ABC transporter integral membrane protein; inner-membrane translocator 2534393 5743752 Cphy_2052 Clostridium phytofermentans ISDg inner-membrane translocator YP_001559159.1 2532924 R 357809 CDS YP_001559160.1 160880192 5743753 complement(2534383..2535486) 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: fnu:FN1897 ABC transporter integral membrane protein; inner-membrane translocator 2535486 5743753 Cphy_2053 Clostridium phytofermentans ISDg inner-membrane translocator YP_001559160.1 2534383 R 357809 CDS YP_001559161.1 160880193 5743754 complement(2535479..2537080) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fno:Fnod_0051 ABC transporter related; ABC transporter 2537080 5743754 Cphy_2054 Clostridium phytofermentans ISDg ABC transporter YP_001559161.1 2535479 R 357809 CDS YP_001559162.1 160880194 5743755 complement(2537233..2538369) 1 NC_010001.1 KEGG: fno:Fnod_0052 conserved hypothetical lipoprotein; lipoprotein 2538369 5743755 Cphy_2055 Clostridium phytofermentans ISDg lipoprotein YP_001559162.1 2537233 R 357809 CDS YP_001559163.1 160880195 5743756 2538743..2540677 1 NC_010001.1 KEGG: cbe:Cbei_1773 hydrogenase, Fe-only; TIGRFAM: hydrogenase, Fe-only; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; hydrogenase, Fe-only 2540677 5743756 Cphy_2056 Clostridium phytofermentans ISDg hydrogenase, Fe-only YP_001559163.1 2538743 D 357809 CDS YP_001559164.1 160880196 5743757 2540994..2541695 1 NC_010001.1 KEGG: cpe:CPE1425 pyrrolidone carboxylylate peptidase; TIGRFAM: pyrrolidone-carboxylate peptidase; PFAM: peptidase C15 pyroglutamyl peptidase I; pyrrolidone-carboxylate peptidase 2541695 5743757 Cphy_2057 Clostridium phytofermentans ISDg pyrrolidone-carboxylate peptidase YP_001559164.1 2540994 D 357809 CDS YP_001559165.1 160880197 5743758 2542002..2543411 1 NC_010001.1 PFAM: glycoside hydrolase family 5; KEGG: cac:CAC0826 endoglucanase family 5; cellulase 2543411 5743758 Cphy_2058 Clostridium phytofermentans ISDg cellulase YP_001559165.1 2542002 D 357809 CDS YP_001559166.1 160880198 5743759 2543795..2544559 1 NC_010001.1 KEGG: ctc:CTC02010 RNA polymerase sigma factor rpoD; hypothetical protein 2544559 5743759 Cphy_2059 Clostridium phytofermentans ISDg hypothetical protein YP_001559166.1 2543795 D 357809 CDS YP_001559167.1 160880199 5743760 2544977..2546347 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mac:MA1121 integral membrane protein; MATE efflux family protein 2546347 5743760 Cphy_2060 Clostridium phytofermentans ISDg MATE efflux family protein YP_001559167.1 2544977 D 357809 CDS YP_001559168.1 160880200 5744067 complement(2546506..2546745) 1 NC_010001.1 hypothetical protein 2546745 5744067 Cphy_2061 Clostridium phytofermentans ISDg hypothetical protein YP_001559168.1 2546506 R 357809 CDS YP_001559169.1 160880201 5744068 2546968..2547720 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2297 daunorubicin resistance ABC transporter ATP-binding subunit; ABC transporter 2547720 5744068 Cphy_2062 Clostridium phytofermentans ISDg ABC transporter YP_001559169.1 2546968 D 357809 CDS YP_001559170.1 160880202 5744069 2547953..2548819 1 NC_010001.1 KEGG: aau:AAur_2329 ABC transporter, integral membrane protein; hypothetical protein 2548819 5744069 Cphy_2063 Clostridium phytofermentans ISDg hypothetical protein YP_001559170.1 2547953 D 357809 CDS YP_001559171.1 160880203 5744070 2549113..2550396 1 NC_010001.1 KEGG: cpr:CPR_0886 MutS domain V protein; mismatch repair ATPase 2550396 5744070 Cphy_2064 Clostridium phytofermentans ISDg mismatch repair ATPase YP_001559171.1 2549113 D 357809 CDS YP_001559172.1 160880204 5744071 2550526..2550768 1 NC_010001.1 KEGG: sha:SH0197 DNA mismatch repair protein MutS; DNA mismatch repair protein MutS 2550768 5744071 Cphy_2065 Clostridium phytofermentans ISDg DNA mismatch repair protein MutS YP_001559172.1 2550526 D 357809 CDS YP_001559173.1 160880205 5744072 2550817..2551242 1 NC_010001.1 hypothetical protein 2551242 5744072 Cphy_2066 Clostridium phytofermentans ISDg hypothetical protein YP_001559173.1 2550817 D 357809 CDS YP_001559174.1 160880206 5744073 2551808..2553178 1 NC_010001.1 TIGRFAM: glycyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: cno:NT01CX_1048 glycyl-tRNA synthetase; glycyl-tRNA synthetase 2553178 5744073 Cphy_2067 Clostridium phytofermentans ISDg glycyl-tRNA synthetase YP_001559174.1 2551808 D 357809 CDS YP_001559175.1 160880207 5744074 complement(2553345..2555243) 1 NC_010001.1 PFAM: peptidase M56 BlaR1; KEGG: dsy:DSY3484 hypothetical protein; peptidase M56 BlaR1 2555243 5744074 Cphy_2068 Clostridium phytofermentans ISDg peptidase M56 BlaR1 YP_001559175.1 2553345 R 357809 CDS YP_001559176.1 160880208 5744075 complement(2555247..2555633) 1 NC_010001.1 PFAM: Penicillinase repressor; KEGG: dsy:DSY3483 hypothetical protein; CopY family transcriptional regulator 2555633 5744075 Cphy_2069 Clostridium phytofermentans ISDg CopY family transcriptional regulator YP_001559176.1 2555247 R 357809 CDS YP_001559177.1 160880209 5744076 complement(2555741..2556529) 1 NC_010001.1 KEGG: btk:BT9727_2690 hypothetical protein; hypothetical protein 2556529 5744076 Cphy_2070 Clostridium phytofermentans ISDg hypothetical protein YP_001559177.1 2555741 R 357809 CDS YP_001559178.1 160880210 5744077 2556720..2557058 1 NC_010001.1 PFAM: transcriptional regulator PadR family protein; KEGG: dsy:DSY1094 hypothetical protein; PadR-like family transcriptional regulator 2557058 5744077 Cphy_2071 Clostridium phytofermentans ISDg PadR-like family transcriptional regulator YP_001559178.1 2556720 D 357809 CDS YP_001559179.1 160880211 5744078 2557048..2557623 1 NC_010001.1 KEGG: dsy:DSY1095 hypothetical protein; hypothetical protein 2557623 5744078 Cphy_2072 Clostridium phytofermentans ISDg hypothetical protein YP_001559179.1 2557048 D 357809 CDS YP_001559180.1 160880212 5744079 2558011..2558517 1 NC_010001.1 KEGG: cbe:Cbei_1958 hypothetical protein; hypothetical protein 2558517 5744079 Cphy_2073 Clostridium phytofermentans ISDg hypothetical protein YP_001559180.1 2558011 D 357809 CDS YP_001559181.1 160880213 5744080 2558582..2559289 1 NC_010001.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: amt:Amet_1217 haloacid dehalogenase domain protein hydrolase; hydrolase 2559289 5744080 Cphy_2074 Clostridium phytofermentans ISDg hydrolase YP_001559181.1 2558582 D 357809 CDS YP_001559182.1 160880214 5744081 2559369..2560538 1 NC_010001.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cdf:CD0146 amidohydrolase; amidohydrolase 2560538 5744081 Cphy_2075 Clostridium phytofermentans ISDg amidohydrolase YP_001559182.1 2559369 D 357809 CDS YP_001559183.1 160880215 5744082 2560810..2561481 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_0537 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2561481 5744082 Cphy_2076 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001559183.1 2560810 D 357809 CDS YP_001559184.1 160880216 5744083 2561481..2562488 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cth:Cthe_0538 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2562488 5744083 Cphy_2077 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001559184.1 2561481 D 357809 CDS YP_001559185.1 160880217 5744084 2562731..2563414 1 NC_010001.1 PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0539 ABC transporter related protein; ABC transporter 2563414 5744084 Cphy_2078 Clostridium phytofermentans ISDg ABC transporter YP_001559185.1 2562731 D 357809 CDS YP_001559186.1 160880218 5744085 2563411..2566101 1 NC_010001.1 PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_0540 protein of unknown function DUF214; hypothetical protein 2566101 5744085 Cphy_2079 Clostridium phytofermentans ISDg hypothetical protein YP_001559186.1 2563411 D 357809 CDS YP_001559187.1 160880219 5744086 2566265..2567089 1 NC_010001.1 PFAM: cell wall hydrolase/autolysin; KEGG: gtn:GTNG_2805 N-acetylmuramoyl-L-alanine amidase, sporulationmother cell wall hydrolase; cell wall hydrolase/autolysin 2567089 5744086 Cphy_2080 Clostridium phytofermentans ISDg cell wall hydrolase/autolysin YP_001559187.1 2566265 D 357809 CDS YP_001559188.1 160880220 5744087 complement(2567398..2568648) 1 NC_010001.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: cth:Cthe_0042 small GTP-binding protein; small GTP-binding protein 2568648 5744087 Cphy_2081 Clostridium phytofermentans ISDg small GTP-binding protein YP_001559188.1 2567398 R 357809 CDS YP_001559189.1 160880221 5744088 complement(2568774..2570192) 1 NC_010001.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH 2570192 thiH 5744088 thiH Clostridium phytofermentans ISDg thiamine biosynthesis protein ThiH YP_001559189.1 2568774 R 357809 CDS YP_001559190.1 160880222 5744089 complement(2570185..2571303) 1 NC_010001.1 catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 2571303 5744089 Cphy_2083 Clostridium phytofermentans ISDg biotin synthase YP_001559190.1 2570185 R 357809 CDS YP_001559191.1 160880223 5744090 2571880..2573673 1 NC_010001.1 PFAM: chemotaxis sensory transducer; Heme NO binding domain protein; KEGG: cac:CAC3243 membrane associated methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2573673 5744090 Cphy_2084 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001559191.1 2571880 D 357809 CDS YP_001559192.1 160880224 5744091 2574440..2576149 1 NC_010001.1 PFAM: Pyrrolo-quinoline quinone; KEGG: cth:Cthe_0739 hypothetical protein; Pyrrolo-quinoline quinone 2576149 5744091 Cphy_2085 Clostridium phytofermentans ISDg Pyrrolo-quinoline quinone YP_001559192.1 2574440 D 357809 CDS YP_001559193.1 160880225 5744092 2576711..2578417 1 NC_010001.1 PFAM: Pyrrolo-quinoline quinone; KEGG: cth:Cthe_0739 hypothetical protein; Pyrrolo-quinoline quinone 2578417 5744092 Cphy_2086 Clostridium phytofermentans ISDg Pyrrolo-quinoline quinone YP_001559193.1 2576711 D 357809 CDS YP_001559194.1 160880226 5744093 2578457..2579296 1 NC_010001.1 PFAM: metallophosphoesterase; KEGG: btk:BT9727_3733 calcineurin-like phosphoesterase; metallophosphoesterase 2579296 5744093 Cphy_2087 Clostridium phytofermentans ISDg metallophosphoesterase YP_001559194.1 2578457 D 357809 CDS YP_001559195.1 160880227 5744094 2579649..2579870 1 NC_010001.1 KEGG: cth:Cthe_0739 hypothetical protein; hypothetical protein 2579870 5744094 Cphy_2088 Clostridium phytofermentans ISDg hypothetical protein YP_001559195.1 2579649 D 357809 CDS YP_001559196.1 160880228 5744095 complement(2580113..2581177) 1 NC_010001.1 PFAM: oxidoreductase domain protein; KEGG: art:Arth_3674 oxidoreductase domain protein; oxidoreductase domain-containing protein 2581177 5744095 Cphy_2089 Clostridium phytofermentans ISDg oxidoreductase domain-containing protein YP_001559196.1 2580113 R 357809 CDS YP_001559197.1 160880229 5744096 2581836..2583587 1 NC_010001.1 hypothetical protein 2583587 5744096 Cphy_2090 Clostridium phytofermentans ISDg hypothetical protein YP_001559197.1 2581836 D 357809 CDS YP_001559198.1 160880230 5744097 2583741..2585411 1 NC_010001.1 hypothetical protein 2585411 5744097 Cphy_2091 Clostridium phytofermentans ISDg hypothetical protein YP_001559198.1 2583741 D 357809 CDS YP_001559199.1 160880231 5744098 2585570..2587219 1 NC_010001.1 hypothetical protein 2587219 5744098 Cphy_2092 Clostridium phytofermentans ISDg hypothetical protein YP_001559199.1 2585570 D 357809 CDS YP_001559200.1 160880232 5744100 complement(2589692..2590483) 1 NC_010001.1 KEGG: tte:TTE2610 histidinol phosphatase and related hydrolases of the PHP family; PHP family histidinol phosphatase/hydrolase 2590483 5744100 Cphy_2094 Clostridium phytofermentans ISDg PHP family histidinol phosphatase/hydrolase YP_001559200.1 2589692 R 357809 CDS YP_001559201.1 160880233 5744102 complement(2592300..2592569) 1 NC_010001.1 PFAM: Coat F domain protein; KEGG: amt:Amet_0905 coat F domain protein; coat F domain-containing protein 2592569 5744102 Cphy_2096 Clostridium phytofermentans ISDg coat F domain-containing protein YP_001559201.1 2592300 R 357809 CDS YP_001559202.1 160880234 5744103 complement(2592582..2592764) 1 NC_010001.1 hypothetical protein 2592764 5744103 Cphy_2097 Clostridium phytofermentans ISDg hypothetical protein YP_001559202.1 2592582 R 357809 CDS YP_001559203.1 160880235 5744104 2593413..2594369 1 NC_010001.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: lwe:lwe0750 amidohydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2594369 5744104 Cphy_2098 Clostridium phytofermentans ISDg nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001559203.1 2593413 D 357809 CDS YP_001559204.1 160880236 5744105 2594452..2594781 1 NC_010001.1 hypothetical protein 2594781 5744105 Cphy_2099 Clostridium phytofermentans ISDg hypothetical protein YP_001559204.1 2594452 D 357809 CDS YP_001559205.1 160880237 5744106 2595165..2595725 1 NC_010001.1 KEGG: dsy:DSY4108 hypothetical protein; hypothetical protein 2595725 5744106 Cphy_2100 Clostridium phytofermentans ISDg hypothetical protein YP_001559205.1 2595165 D 357809 CDS YP_001559206.1 160880238 5744107 2596443..2597078 1 NC_010001.1 hypothetical protein 2597078 5744107 Cphy_2101 Clostridium phytofermentans ISDg hypothetical protein YP_001559206.1 2596443 D 357809 CDS YP_001559207.1 160880239 5744108 2597738..2598319 1 NC_010001.1 PFAM: integrase family protein; KEGG: cbe:Cbei_1373 phage integrase family protein; integrase family protein 2598319 5744108 Cphy_2102 Clostridium phytofermentans ISDg integrase family protein YP_001559207.1 2597738 D 357809 CDS YP_001559208.1 160880240 5744109 complement(2598670..2599902) 1 NC_010001.1 PFAM: MOFRL domain protein; KEGG: amt:Amet_0678 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; hydroxypyruvate reductase 2599902 5744109 Cphy_2103 Clostridium phytofermentans ISDg hydroxypyruvate reductase YP_001559208.1 2598670 R 357809 CDS YP_001559209.1 160880241 5744110 complement(2599983..2601350) 1 NC_010001.1 PFAM: Gluconate transporter; Citrate transporter; KEGG: tde:TDE0207 permease, GntP family; gluconate transporter 2601350 5744110 Cphy_2104 Clostridium phytofermentans ISDg gluconate transporter YP_001559209.1 2599983 R 357809 CDS YP_001559210.1 160880242 5744111 2602117..2602755 1 NC_010001.1 PFAM: glycoside hydrolase family 11; KEGG: bay:RBAM_033790 XynA; endo-1,4-beta-xylanase 2602755 5744111 Cphy_2105 Clostridium phytofermentans ISDg endo-1,4-beta-xylanase YP_001559210.1 2602117 D 357809 CDS YP_001559211.1 160880243 5744112 2603026..2603856 1 NC_010001.1 PFAM: protein of unknown function DUF323; KEGG: cbe:Cbei_3040 protein of unknown function DUF323; hypothetical protein 2603856 5744112 Cphy_2106 Clostridium phytofermentans ISDg hypothetical protein YP_001559211.1 2603026 D 357809 CDS YP_001559212.1 160880244 5744113 complement(2604341..2605282) 1 NC_010001.1 PFAM: transcription activator effector binding; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH0594 transcriptional regulator (AraC/XylS family); AraC family transcriptional regulator 2605282 5744113 Cphy_2107 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001559212.1 2604341 R 357809 CDS YP_001559213.1 160880245 5744114 2605495..2607915 1 NC_010001.1 PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; KEGG: tpt:Tpet_0863 endo-1,4-beta-xylanase; endo-1,4-beta-xylanase 2607915 5744114 Cphy_2108 Clostridium phytofermentans ISDg endo-1,4-beta-xylanase YP_001559213.1 2605495 D 357809 CDS YP_001559214.1 160880246 5744115 2608431..2609351 1 NC_010001.1 PFAM: aminoglycoside phosphotransferase; KEGG: bat:BAS2405 hypothetical protein; aminoglycoside phosphotransferase 2609351 5744115 Cphy_2109 Clostridium phytofermentans ISDg aminoglycoside phosphotransferase YP_001559214.1 2608431 D 357809 CDS YP_001559215.1 160880247 5744116 complement(2609432..2610592) 1 NC_010001.1 PFAM: sugar diacid recognition domain protein; KEGG: btk:BT9727_1189 transcriptional regulator; possible carbohydrate diacid regulator; transcriptional regulator CdaR 2610592 5744116 Cphy_2110 Clostridium phytofermentans ISDg transcriptional regulator CdaR YP_001559215.1 2609432 R 357809 CDS YP_001559216.1 160880248 5744117 2610968..2612110 1 NC_010001.1 PFAM: helix-turn-helix domain protein; KEGG: btl:BALH_2993 transcriptional regulator; XRE family transcriptional regulator 2612110 5744117 Cphy_2111 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001559216.1 2610968 D 357809 CDS YP_001559217.1 160880249 5744118 2612154..2612351 1 NC_010001.1 KEGG: cth:Cthe_1537 hypothetical protein; hypothetical protein 2612351 5744118 Cphy_2112 Clostridium phytofermentans ISDg hypothetical protein YP_001559217.1 2612154 D 357809 CDS YP_001559218.1 160880250 5744119 2612344..2613255 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1536 ABC transporter related protein; ABC transporter 2613255 5744119 Cphy_2113 Clostridium phytofermentans ISDg ABC transporter YP_001559218.1 2612344 D 357809 CDS YP_001559219.1 160880251 5744120 2613252..2614022 1 NC_010001.1 KEGG: cth:Cthe_1535 hypothetical protein; hypothetical protein 2614022 5744120 Cphy_2114 Clostridium phytofermentans ISDg hypothetical protein YP_001559219.1 2613252 D 357809 CDS YP_001559220.1 160880252 5744121 2614505..2615665 1 NC_010001.1 PFAM: major facilitator superfamily MFS_1; KEGG: cth:Cthe_2967 major facilitator superfamily MFS_1; major facilitator transporter 2615665 5744121 Cphy_2115 Clostridium phytofermentans ISDg major facilitator transporter YP_001559220.1 2614505 D 357809 CDS YP_001559221.1 160880253 5744122 2615869..2616231 1 NC_010001.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cbf:CLI_2228 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 2616231 5744122 Cphy_2116 Clostridium phytofermentans ISDg glyoxalase/bleomycin resistance protein/dioxygenase YP_001559221.1 2615869 D 357809 CDS YP_001559222.1 160880254 5744123 2616794..2617129 1 NC_010001.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_0063 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 2617129 5744123 Cphy_2117 Clostridium phytofermentans ISDg rubredoxin-type Fe(Cys)4 protein YP_001559222.1 2616794 D 357809 CDS YP_001559223.1 160880255 5744124 2617414..2618568 1 NC_010001.1 hypothetical protein 2618568 5744124 Cphy_2118 Clostridium phytofermentans ISDg hypothetical protein YP_001559223.1 2617414 D 357809 CDS YP_001559224.1 160880256 5744125 2619383..2621248 1 NC_010001.1 PFAM: cytochrome c biogenesis protein transmembrane region; Heavy metal transport/detoxification protein; KEGG: cth:Cthe_1849 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 2621248 5744125 Cphy_2119 Clostridium phytofermentans ISDg heavy metal transport/detoxification protein YP_001559224.1 2619383 D 357809 CDS YP_001559225.1 160880257 5744126 2621400..2621954 1 NC_010001.1 KEGG: cth:Cthe_1850 hypothetical protein; hypothetical protein 2621954 5744126 Cphy_2120 Clostridium phytofermentans ISDg hypothetical protein YP_001559225.1 2621400 D 357809 CDS YP_001559226.1 160880258 5744127 2622164..2622859 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1847 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2622859 5744127 Cphy_2121 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001559226.1 2622164 D 357809 CDS YP_001559227.1 160880259 5744128 2622861..2624255 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ckl:CKL_1494 predicted sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2624255 5744128 Cphy_2122 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001559227.1 2622861 D 357809 CDS YP_001559228.1 160880260 5744129 2624531..2626852 1 NC_010001.1 SMART: transglutaminase domain protein; KEGG: ssa:SSA_0384 hypothetical protein; transglutaminase domain-containing protein 2626852 5744129 Cphy_2123 Clostridium phytofermentans ISDg transglutaminase domain-containing protein YP_001559228.1 2624531 D 357809 CDS YP_001559229.1 160880261 5744130 2627181..2627966 1 NC_010001.1 PFAM: oxidoreductase domain protein; aspartate dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: pha:PSHAb0019 dinucleotide-utilizing enzyme; aspartate dehydrogenase 2627966 5744130 Cphy_2124 Clostridium phytofermentans ISDg aspartate dehydrogenase YP_001559229.1 2627181 D 357809 CDS YP_001559230.1 160880262 5744131 2627980..2628885 1 NC_010001.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bvu:BVU_0072 lactate dehydrogenase and related dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 2628885 5744131 Cphy_2125 Clostridium phytofermentans ISDg D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit YP_001559230.1 2627980 D 357809 CDS YP_001559231.1 160880263 5744132 2628955..2629557 1 NC_010001.1 PFAM: pentapeptide repeat protein; KEGG: mba:Mbar_A3729 hypothetical protein; pentapeptide repeat-containing protein 2629557 5744132 Cphy_2126 Clostridium phytofermentans ISDg pentapeptide repeat-containing protein YP_001559231.1 2628955 D 357809 CDS YP_001559232.1 160880264 5744133 2629709..2631667 1 NC_010001.1 contains C-terminal beta-propeller domain distantly related to WD-40 repeats; KEGG: cth:Cthe_2109 copper amine oxidase-like protein; hypothetical protein 2631667 5744133 Cphy_2127 Clostridium phytofermentans ISDg hypothetical protein YP_001559232.1 2629709 D 357809 CDS YP_001559233.1 160880265 5744134 complement(2632016..2634589) 1 NC_010001.1 PFAM: glycoside hydrolase family 26; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: cth:Cthe_0032 glycoside hydrolase, family 26; mannan endo-1,4-beta-mannosidase 2634589 5744134 Cphy_2128 Clostridium phytofermentans ISDg mannan endo-1,4-beta-mannosidase YP_001559233.1 2632016 R 357809 CDS YP_001559234.1 160880266 5744135 2634921..2635286 1 NC_010001.1 PFAM: regulatory protein ArsR; KEGG: fno:Fnod_1613 regulatory protein ArsR; ArsR family transcriptional regulator 2635286 5744135 Cphy_2129 Clostridium phytofermentans ISDg ArsR family transcriptional regulator YP_001559234.1 2634921 D 357809 CDS YP_001559235.1 160880267 5744136 2635399..2635950 1 NC_010001.1 hypothetical protein 2635950 5744136 Cphy_2130 Clostridium phytofermentans ISDg hypothetical protein YP_001559235.1 2635399 D 357809 CDS YP_001559236.1 160880268 5744137 2636185..2636763 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2636763 5744137 Cphy_2131 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001559236.1 2636185 D 357809 CDS YP_001559237.1 160880269 5744138 complement(2637083..2639602) 1 NC_010001.1 KEGG: cbf:CLI_1616 hypothetical protein; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; P-type HAD superfamily ATPase 2639602 5744138 Cphy_2132 Clostridium phytofermentans ISDg P-type HAD superfamily ATPase YP_001559237.1 2637083 R 357809 CDS YP_001559238.1 160880270 5744139 2640085..2640363 1 NC_010001.1 PFAM: protein of unknown function DUF156; KEGG: dsy:DSY0389 hypothetical protein; hypothetical protein 2640363 5744139 Cphy_2133 Clostridium phytofermentans ISDg hypothetical protein YP_001559238.1 2640085 D 357809 CDS YP_001559239.1 160880271 5744140 2640571..2642034 1 NC_010001.1 KEGG: ctc:CTC00436 hypothetical protein; hypothetical protein 2642034 5744140 Cphy_2134 Clostridium phytofermentans ISDg hypothetical protein YP_001559239.1 2640571 D 357809 CDS YP_001559240.1 160880272 5744141 complement(2642424..2644175) 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: spd:SPD_1621 ABC transporter, ATP-binding/permease; ABC transporter 2644175 5744141 Cphy_2135 Clostridium phytofermentans ISDg ABC transporter YP_001559240.1 2642424 R 357809 CDS YP_001559241.1 160880273 5744142 complement(2644165..2645166) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgl:SG0677 ABC transporter ATP-binding component; ABC transporter 2645166 5744142 Cphy_2136 Clostridium phytofermentans ISDg ABC transporter YP_001559241.1 2644165 R 357809 CDS YP_001559242.1 160880274 5744143 complement(2645176..2645928) 1 NC_010001.1 KEGG: lsa:LSA1148 multidrug ABC exporter, ATP-binding and membrane-spanning/permease subunits; multidrug ABC transporter ATPase/permease-like protein 2645928 5744143 Cphy_2137 Clostridium phytofermentans ISDg multidrug ABC transporter ATPase/permease-like protein YP_001559242.1 2645176 R 357809 CDS YP_001559243.1 160880275 5744144 complement(2645925..2646398) 1 NC_010001.1 PFAM: regulatory protein MarR; KEGG: cbe:Cbei_0048 transcriptional regulator, TrmB; MarR family transcriptional regulator 2646398 5744144 Cphy_2138 Clostridium phytofermentans ISDg MarR family transcriptional regulator YP_001559243.1 2645925 R 357809 CDS YP_001559244.1 160880276 5744145 2646855..2647898 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: cth:Cthe_1588 extracellular solute-binding protein, family 1; extracellular solute-binding protein 2647898 5744145 Cphy_2139 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001559244.1 2646855 D 357809 CDS YP_001559245.1 160880277 5744146 2647959..2649653 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cth:Cthe_1585 signal transduction histidine kinase, LytS; histidine kinase internal region 2649653 5744146 Cphy_2140 Clostridium phytofermentans ISDg histidine kinase internal region YP_001559245.1 2647959 D 357809 CDS YP_001559246.1 160880278 5744147 2649690..2650472 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cth:Cthe_1584 two component transcriptional regulator, AraC family; two component AraC family transcriptional regulator 2650472 5744147 Cphy_2141 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001559246.1 2649690 D 357809 CDS YP_001559247.1 160880279 5744148 2650834..2652171 1 NC_010001.1 KEGG: tde:TDE0186 hypothetical protein; hypothetical protein 2652171 5744148 Cphy_2142 Clostridium phytofermentans ISDg hypothetical protein YP_001559247.1 2650834 D 357809 CDS YP_001559248.1 160880280 5744149 2652240..2654066 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tde:TDE0183 ABC transporter, permease; binding-protein-dependent transport systems inner membrane component 2654066 5744149 Cphy_2143 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001559248.1 2652240 D 357809 CDS YP_001559249.1 160880281 5744150 2654068..2655714 1 NC_010001.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tde:TDE0182 ABC transporter, ATP-binding protein; ABC transporter 2655714 5744150 Cphy_2144 Clostridium phytofermentans ISDg ABC transporter YP_001559249.1 2654068 D 357809 CDS YP_001559250.1 160880282 5744151 2656506..2656790 1 NC_010001.1 hypothetical protein 2656790 5744151 Cphy_2145 Clostridium phytofermentans ISDg hypothetical protein YP_001559250.1 2656506 D 357809 CDS YP_001559251.1 160880283 5744152 complement(2656887..2657252) 1 NC_010001.1 hypothetical protein 2657252 5744152 Cphy_2146 Clostridium phytofermentans ISDg hypothetical protein YP_001559251.1 2656887 R 357809 CDS YP_001559252.1 160880284 5744153 2657278..2657796 1 NC_010001.1 hypothetical protein 2657796 5744153 Cphy_2147 Clostridium phytofermentans ISDg hypothetical protein YP_001559252.1 2657278 D 357809 CDS YP_001559253.1 160880285 5744154 2657890..2659413 1 NC_010001.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: blo:BL1114 DNA polymerase V; DNA-repair protein 2659413 5744154 Cphy_2148 Clostridium phytofermentans ISDg DNA-repair protein YP_001559253.1 2657890 D 357809 CDS YP_001559254.1 160880286 5744155 2659410..2659838 1 NC_010001.1 KEGG: lre:Lreu_1305 hypothetical protein; hypothetical protein 2659838 5744155 Cphy_2149 Clostridium phytofermentans ISDg hypothetical protein YP_001559254.1 2659410 D 357809 CDS YP_001559255.1 160880287 5744156 2660334..2660927 1 NC_010001.1 KEGG: fno:Fnod_0484 phosphodiesterase, MJ0936 family; phosphodiesterase 2660927 5744156 Cphy_2150 Clostridium phytofermentans ISDg phosphodiesterase YP_001559255.1 2660334 D 357809 CDS YP_001559256.1 160880288 5744157 2661398..2661727 1 NC_010001.1 PFAM: regulatory protein ArsR; KEGG: cbe:Cbei_2108 regulatory protein, ArsR; ArsR family transcriptional regulator 2661727 5744157 Cphy_2151 Clostridium phytofermentans ISDg ArsR family transcriptional regulator YP_001559256.1 2661398 D 357809 CDS YP_001559257.1 160880289 5744158 2661794..2663542 1 NC_010001.1 KEGG: dsy:DSY4598 hypothetical protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA 2663542 5744158 Cphy_2152 Clostridium phytofermentans ISDg arsenite-activated ATPase ArsA YP_001559257.1 2661794 D 357809 CDS YP_001559258.1 160880290 5744159 2663601..2664650 1 NC_010001.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dsy:DSY4672 hypothetical protein; arsenical-resistance protein 2664650 5744159 Cphy_2153 Clostridium phytofermentans ISDg arsenical-resistance protein YP_001559258.1 2663601 D 357809 CDS YP_001559259.1 160880291 5744160 2664668..2665051 1 NC_010001.1 PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: dsy:DSY4151 hypothetical protein; arsenical resistance operon trans-acting repressor ArsD 2665051 5744160 Cphy_2154 Clostridium phytofermentans ISDg arsenical resistance operon trans-acting repressor ArsD YP_001559259.1 2664668 D 357809 CDS YP_001559260.1 160880292 5744161 2665090..2665500 1 NC_010001.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cbe:Cbei_2111 protein tyrosine phosphatase; protein tyrosine phosphatase 2665500 5744161 Cphy_2155 Clostridium phytofermentans ISDg protein tyrosine phosphatase YP_001559260.1 2665090 D 357809 CDS YP_001559261.1 160880293 5744162 complement(2665661..2666563) 1 NC_010001.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ckl:CKL_3374 predicted transcriptional regulator; LysR family transcriptional regulator 2666563 5744162 Cphy_2156 Clostridium phytofermentans ISDg LysR family transcriptional regulator YP_001559261.1 2665661 R 357809 CDS YP_001559262.1 160880294 5744163 2666709..2668148 1 NC_010001.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: sep:SE0112 pyridoxal-deC; pyridoxal-dependent decarboxylase 2668148 5744163 Cphy_2157 Clostridium phytofermentans ISDg pyridoxal-dependent decarboxylase YP_001559262.1 2666709 D 357809 CDS YP_001559263.1 160880295 5744164 2668476..2668760 1 NC_010001.1 KEGG: cdf:CD0664B hypothetical protein; hypothetical protein 2668760 5744164 Cphy_2158 Clostridium phytofermentans ISDg hypothetical protein YP_001559263.1 2668476 D 357809 CDS YP_001559264.1 160880296 5744165 2668785..2669726 1 NC_010001.1 KEGG: bha:BH1891 hypothetical protein; hypothetical protein 2669726 5744165 Cphy_2159 Clostridium phytofermentans ISDg hypothetical protein YP_001559264.1 2668785 D 357809 CDS YP_001559265.1 160880297 5744166 2669799..2670587 1 NC_010001.1 hypothetical protein 2670587 5744166 Cphy_2160 Clostridium phytofermentans ISDg hypothetical protein YP_001559265.1 2669799 D 357809 CDS YP_001559266.1 160880298 5744167 2670607..2671065 1 NC_010001.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3240 cupin 2, conserved barrel domain protein; cupin 2671065 5744167 Cphy_2161 Clostridium phytofermentans ISDg cupin YP_001559266.1 2670607 D 357809 CDS YP_001559267.1 160880299 5744168 2671244..2671888 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: lic:LIC12825 hypothetical protein; N-acetyltransferase GCN5 2671888 5744168 Cphy_2162 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001559267.1 2671244 D 357809 CDS YP_001559268.1 160880300 5744169 2671997..2672296 1 NC_010001.1 KEGG: bcl:ABC1976 hypothetical protein; hypothetical protein 2672296 5744169 Cphy_2163 Clostridium phytofermentans ISDg hypothetical protein YP_001559268.1 2671997 D 357809 CDS YP_001559269.1 160880301 5744170 2672421..2673038 1 NC_010001.1 hypothetical protein 2673038 5744170 Cphy_2164 Clostridium phytofermentans ISDg hypothetical protein YP_001559269.1 2672421 D 357809 CDS YP_001559270.1 160880302 5744171 2673110..2673586 1 NC_010001.1 KEGG: cbe:Cbei_3228 hypothetical protein; hypothetical protein 2673586 5744171 Cphy_2165 Clostridium phytofermentans ISDg hypothetical protein YP_001559270.1 2673110 D 357809 CDS YP_001559271.1 160880303 5744172 2674071..2674601 1 NC_010001.1 PFAM: nitroreductase; KEGG: ckl:CKL_0342 predicted oxidoreductase; nitroreductase 2674601 5744172 Cphy_2166 Clostridium phytofermentans ISDg nitroreductase YP_001559271.1 2674071 D 357809 CDS YP_001559272.1 160880304 5744173 2675143..2675394 1 NC_010001.1 KEGG: pth:PTH_1521 hypothetical protein; hypothetical protein 2675394 5744173 Cphy_2167 Clostridium phytofermentans ISDg hypothetical protein YP_001559272.1 2675143 D 357809 CDS YP_001559273.1 160880305 5744174 2675361..2675846 1 NC_010001.1 hypothetical protein 2675846 5744174 Cphy_2168 Clostridium phytofermentans ISDg hypothetical protein YP_001559273.1 2675361 D 357809 CDS YP_001559274.1 160880306 5744175 2677724..2678545 1 NC_010001.1 hypothetical protein 2678545 5744175 Cphy_2169 Clostridium phytofermentans ISDg hypothetical protein YP_001559274.1 2677724 D 357809 CDS YP_001559275.1 160880307 5744176 2678983..2679942 1 NC_010001.1 KEGG: fnu:FN0847 TPR-repeat-containing proteins; hypothetical protein 2679942 5744176 Cphy_2170 Clostridium phytofermentans ISDg hypothetical protein YP_001559275.1 2678983 D 357809 CDS YP_001559276.1 160880308 5744482 2679952..2680446 1 NC_010001.1 PFAM: heat shock protein DnaJ domain protein; molecular chaperone DnaJ 2680446 5744482 Cphy_2171 Clostridium phytofermentans ISDg molecular chaperone DnaJ YP_001559276.1 2679952 D 357809 CDS YP_001559277.1 160880309 5744483 complement(2682183..2683085) 1 NC_010001.1 PFAM: Integrase catalytic region; KEGG: cbe:Cbei_0719 integrase, catalytic region; integrase catalytic region 2683085 5744483 Cphy_2172 Clostridium phytofermentans ISDg integrase catalytic region YP_001559277.1 2682183 R 357809 CDS YP_001559278.1 160880310 5744484 complement(2683160..2683846) 1 NC_010001.1 PFAM: transposase IS3/IS911 family protein; KEGG: lga:LGAS_1507 transposase; transposase IS3/IS911 family protein 2683846 5744484 Cphy_2173 Clostridium phytofermentans ISDg transposase IS3/IS911 family protein YP_001559278.1 2683160 R 357809 CDS YP_001559279.1 160880311 5744485 complement(2683976..2684371) 1 NC_010001.1 hypothetical protein 2684371 5744485 Cphy_2174 Clostridium phytofermentans ISDg hypothetical protein YP_001559279.1 2683976 R 357809 CDS YP_001559280.1 160880312 5744486 complement(2684368..2685171) 1 NC_010001.1 KEGG: amt:Amet_4677 hypothetical protein; hypothetical protein 2685171 5744486 Cphy_2175 Clostridium phytofermentans ISDg hypothetical protein YP_001559280.1 2684368 R 357809 CDS YP_001559281.1 160880313 5744487 2686381..2686956 1 NC_010001.1 KEGG: bca:BCE_A0177 hypothetical protein; hypothetical protein 2686956 5744487 Cphy_2176 Clostridium phytofermentans ISDg hypothetical protein YP_001559281.1 2686381 D 357809 CDS YP_001559282.1 160880314 5744488 2686972..2688351 1 NC_010001.1 KEGG: bca:BCE_A0176 hypothetical protein; hypothetical protein 2688351 5744488 Cphy_2177 Clostridium phytofermentans ISDg hypothetical protein YP_001559282.1 2686972 D 357809 CDS YP_001559283.1 160880315 5744489 complement(2689334..2689666) 1 NC_010001.1 PFAM: Protein of unknown function CGGC region; KEGG: cbf:CLI_0908 CGGC domain protein; hypothetical protein 2689666 5744489 Cphy_2178 Clostridium phytofermentans ISDg hypothetical protein YP_001559283.1 2689334 R 357809 CDS YP_001559284.1 160880316 5744490 complement(2689774..2690895) 1 NC_010001.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bpl:BURPS1106A_A2865 cysteine desulfurase; cysteine desulfurase 2690895 5744490 Cphy_2179 Clostridium phytofermentans ISDg cysteine desulfurase YP_001559284.1 2689774 R 357809 CDS YP_001559285.1 160880317 5744491 2691004..2691660 1 NC_010001.1 PFAM: Rhodanese domain protein; regulatory protein ArsR; KEGG: mba:Mbar_A3427 ArsR family transcriptional regulator; ArsR family transcriptional regulator 2691660 5744491 Cphy_2180 Clostridium phytofermentans ISDg ArsR family transcriptional regulator YP_001559285.1 2691004 D 357809 CDS YP_001559286.1 160880318 5744492 complement(2691895..2692935) 1 NC_010001.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cac:CAC3420 low specificity L-threonine aldolase; threonine aldolase 2692935 5744492 Cphy_2181 Clostridium phytofermentans ISDg threonine aldolase YP_001559286.1 2691895 R 357809 CDS YP_001559287.1 160880319 5744493 complement(2693182..2694063) 1 NC_010001.1 PFAM: Patatin; KEGG: cpr:CPR_1546 patatin-like phospholipase family; patatin 2694063 5744493 Cphy_2182 Clostridium phytofermentans ISDg patatin YP_001559287.1 2693182 R 357809 CDS YP_001559288.1 160880320 5744494 complement(2694243..2694989) 1 NC_010001.1 PFAM: CutC family protein; KEGG: bvu:BVU_3897 copper homeostasis protein; CutC family protein 2694989 5744494 Cphy_2183 Clostridium phytofermentans ISDg CutC family protein YP_001559288.1 2694243 R 357809 CDS YP_001559289.1 160880321 5744495 complement(2695170..2696594) 1 NC_010001.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: cbe:Cbei_2737 leucyl aminopeptidase; leucyl aminopeptidase 2696594 5744495 Cphy_2184 Clostridium phytofermentans ISDg leucyl aminopeptidase YP_001559289.1 2695170 R 357809 CDS YP_001559290.1 160880322 5744496 complement(2696627..2697487) 1 NC_010001.1 PFAM: protein of unknown function DUF161; KEGG: cdf:CD1950 hypothetical protein; hypothetical protein 2697487 5744496 Cphy_2185 Clostridium phytofermentans ISDg hypothetical protein YP_001559290.1 2696627 R 357809 CDS YP_001559291.1 160880323 5744497 complement(2697540..2700275) 1 NC_010001.1 PFAM: transglutaminase domain protein; KEGG: pdi:BDI_3332 hypothetical protein; transglutaminase domain-containing protein 2700275 5744497 Cphy_2186 Clostridium phytofermentans ISDg transglutaminase domain-containing protein YP_001559291.1 2697540 R 357809 CDS YP_001559292.1 160880324 5744498 complement(2700406..2702664) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: csc:Csac_2727 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 2702664 5744498 Cphy_2187 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001559292.1 2700406 R 357809 CDS YP_001559293.1 160880325 5744499 2702785..2703105 1 NC_010001.1 hypothetical protein 2703105 5744499 Cphy_2188 Clostridium phytofermentans ISDg hypothetical protein YP_001559293.1 2702785 D 357809 CDS YP_001559294.1 160880326 5744500 complement(2703144..2704676) 1 NC_010001.1 PFAM: glutaredoxin 2; KEGG: mhu:Mhun_3231 cytochrome c biogenesis protein, transmembrane region; glutaredoxin 2704676 5744500 Cphy_2189 Clostridium phytofermentans ISDg glutaredoxin YP_001559294.1 2703144 R 357809 CDS YP_001559295.1 160880327 5744501 complement(2704764..2706071) 1 NC_010001.1 PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: cpe:CPE0324 probable glycosyl hydrolase; alpha-L-fucosidase 2706071 5744501 Cphy_2190 Clostridium phytofermentans ISDg alpha-L-fucosidase YP_001559295.1 2704764 R 357809 CDS YP_001559296.1 160880328 5744502 complement(2706212..2707117) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0362 polysaccharide ABC transporter permease; binding-protein-dependent transport systems inner membrane component 2707117 5744502 Cphy_2191 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001559296.1 2706212 R 357809 CDS YP_001559297.1 160880329 5744503 complement(2707130..2708053) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3119 sugar ABC transporter permease; binding-protein-dependent transport systems inner membrane component 2708053 5744503 Cphy_2192 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001559297.1 2707130 R 357809 CDS YP_001559298.1 160880330 5744504 complement(2708129..2709802) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: oih:OB3210 multiple sugar transport system substrate-binding protein; extracellular solute-binding protein 2709802 5744504 Cphy_2193 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001559298.1 2708129 R 357809 CDS YP_001559299.1 160880331 5744505 complement(2710144..2710530) 1 NC_010001.1 KEGG: amt:Amet_1816 hypothetical protein; hypothetical protein 2710530 5744505 Cphy_2194 Clostridium phytofermentans ISDg hypothetical protein YP_001559299.1 2710144 R 357809 CDS YP_001559300.1 160880332 5744506 2710892..2711944 1 NC_010001.1 PFAM: integrase family protein; KEGG: cdf:CD1932 tyrosine recombinase; integrase family protein 2711944 5744506 Cphy_2195 Clostridium phytofermentans ISDg integrase family protein YP_001559300.1 2710892 D 357809 CDS YP_001559301.1 160880333 5744507 complement(2712103..2712330) 1 NC_010001.1 hypothetical protein 2712330 5744507 Cphy_2196 Clostridium phytofermentans ISDg hypothetical protein YP_001559301.1 2712103 R 357809 CDS YP_001559302.1 160880334 5744508 complement(2712452..2712796) 1 NC_010001.1 hypothetical protein 2712796 5744508 Cphy_2197 Clostridium phytofermentans ISDg hypothetical protein YP_001559302.1 2712452 R 357809 CDS YP_001559303.1 160880335 5744509 complement(2712783..2713097) 1 NC_010001.1 hypothetical protein 2713097 5744509 Cphy_2198 Clostridium phytofermentans ISDg hypothetical protein YP_001559303.1 2712783 R 357809 CDS YP_001559304.1 160880336 5744510 complement(2713097..2713576) 1 NC_010001.1 hypothetical protein 2713576 5744510 Cphy_2199 Clostridium phytofermentans ISDg hypothetical protein YP_001559304.1 2713097 R 357809 CDS YP_001559305.1 160880337 5744511 complement(2714264..2716144) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE1062 ABC transporter, ATP-binding protein, HlyB family; ABC transporter related 2716144 5744511 Cphy_2200 Clostridium phytofermentans ISDg ABC transporter related YP_001559305.1 2714264 R 357809 CDS YP_001559306.1 160880338 5744512 complement(2716131..2717987) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE1061 ABC transporter, ATP-binding/permease, HlyB family; ABC transporter 2717987 5744512 Cphy_2201 Clostridium phytofermentans ISDg ABC transporter YP_001559306.1 2716131 R 357809 CDS YP_001559307.1 160880339 5744513 complement(2718032..2718355) 1 NC_010001.1 PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein; phosphopantetheine-binding protein 2718355 5744513 Cphy_2202 Clostridium phytofermentans ISDg phosphopantetheine-binding protein YP_001559307.1 2718032 R 357809 CDS YP_001559308.1 160880340 5744514 complement(2718360..2718614) 1 NC_010001.1 KEGG: lsl:LSL_1787 transposase ISLasa14, IS3 family; IS3 family transposase 2718614 5744514 Cphy_2203 Clostridium phytofermentans ISDg IS3 family transposase YP_001559308.1 2718360 R 357809 CDS YP_001559309.1 160880341 5744515 2719208..2719666 1 NC_010001.1 hypothetical protein 2719666 5744515 Cphy_2204 Clostridium phytofermentans ISDg hypothetical protein YP_001559309.1 2719208 D 357809 CDS YP_001559310.1 160880342 5744516 complement(2720126..2720356) 1 NC_010001.1 KEGG: amt:Amet_1757 IstB domain protein ATP-binding protein; hypothetical protein 2720356 5744516 Cphy_2205 Clostridium phytofermentans ISDg hypothetical protein YP_001559310.1 2720126 R 357809 CDS YP_001559311.1 160880343 5744517 complement(2721030..2721305) 1 NC_010001.1 hypothetical protein 2721305 5744517 Cphy_2206 Clostridium phytofermentans ISDg hypothetical protein YP_001559311.1 2721030 R 357809 CDS YP_001559312.1 160880344 5744518 complement(2721373..2722410) 1 NC_010001.1 KEGG: ssp:SSP1089 FKBP-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)-like protein 2722410 5744518 Cphy_2207 Clostridium phytofermentans ISDg FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)-like protein YP_001559312.1 2721373 R 357809 CDS YP_001559313.1 160880345 5744519 complement(2722427..2723719) 1 NC_010001.1 KEGG: dsy:DSY2015 hypothetical protein; hypothetical protein 2723719 5744519 Cphy_2208 Clostridium phytofermentans ISDg hypothetical protein YP_001559313.1 2722427 R 357809 CDS YP_001559314.1 160880346 5744520 complement(2724406..2725350) 1 NC_010001.1 KEGG: bha:BH1891 hypothetical protein; hypothetical protein 2725350 5744520 Cphy_2209 Clostridium phytofermentans ISDg hypothetical protein YP_001559314.1 2724406 R 357809 CDS YP_001559315.1 160880347 5744521 complement(2725508..2726581) 1 NC_010001.1 KEGG: ldb:Ldb0968 hypothetical protein; hypothetical protein 2726581 5744521 Cphy_2210 Clostridium phytofermentans ISDg hypothetical protein YP_001559315.1 2725508 R 357809 CDS YP_001559316.1 160880348 5744522 complement(2726612..2728450) 1 NC_010001.1 KEGG: lbu:LBUL_0835 hypothetical protein; hypothetical protein 2728450 5744522 Cphy_2211 Clostridium phytofermentans ISDg hypothetical protein YP_001559316.1 2726612 R 357809 CDS YP_001559317.1 160880349 5744523 complement(2728428..2730374) 1 NC_010001.1 PFAM: glycosyl transferase family 2; chitin synthase; KEGG: msm:MSMEG_0476 chitin synthase; glycosyl transferase family protein 2730374 5744523 Cphy_2212 Clostridium phytofermentans ISDg glycosyl transferase family protein YP_001559317.1 2728428 R 357809 CDS YP_001559318.1 160880350 5744524 complement(2730477..2733857) 1 NC_010001.1 PFAM: polysaccharide deacetylase; KEGG: cdf:CD2598 oligosaccharide deacetylase; polysaccharide deacetylase 2733857 5744524 Cphy_2213 Clostridium phytofermentans ISDg polysaccharide deacetylase YP_001559318.1 2730477 R 357809 CDS YP_001559319.1 160880351 5744525 complement(2733925..2735244) 1 NC_010001.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: cth:Cthe_2340 UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 2735244 5744525 Cphy_2214 Clostridium phytofermentans ISDg nucleotide sugar dehydrogenase YP_001559319.1 2733925 R 357809 CDS YP_001559320.1 160880352 5744526 complement(2736223..2736753) 1 NC_010001.1 PFAM: Chloramphenicol phosphotransferase family protein; KEGG: ppr:PBPRA2780 hypothetical protein; chloramphenicol phosphotransferase family protein 2736753 5744526 Cphy_2215 Clostridium phytofermentans ISDg chloramphenicol phosphotransferase family protein YP_001559320.1 2736223 R 357809 CDS YP_001559321.1 160880353 5744527 complement(2736794..2737645) 1 NC_010001.1 KEGG: bat:BAS2739 hypothetical protein; hypothetical protein 2737645 5744527 Cphy_2216 Clostridium phytofermentans ISDg hypothetical protein YP_001559321.1 2736794 R 357809 CDS YP_001559322.1 160880354 5744528 complement(2737954..2738352) 1 NC_010001.1 KEGG: bpu:BPUM_0359 hypothetical protein; hypothetical protein 2738352 5744528 Cphy_2217 Clostridium phytofermentans ISDg hypothetical protein YP_001559322.1 2737954 R 357809 CDS YP_001559323.1 160880355 5744529 complement(2738606..2738857) 1 NC_010001.1 KEGG: btk:pBT9727_0044 acetyltransferase; acetyltransferase 2738857 5744529 Cphy_2218 Clostridium phytofermentans ISDg acetyltransferase YP_001559323.1 2738606 R 357809 CDS YP_001559324.1 160880356 5744530 complement(2739342..2739800) 1 NC_010001.1 hypothetical protein 2739800 5744530 Cphy_2219 Clostridium phytofermentans ISDg hypothetical protein YP_001559324.1 2739342 R 357809 CDS YP_001559325.1 160880357 5744531 2740762..2742240 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_2735 drug resistance ABC transporter, RA2 family, ATP-binding protein; ABC transporter 2742240 5744531 Cphy_2220 Clostridium phytofermentans ISDg ABC transporter YP_001559325.1 2740762 D 357809 CDS YP_001559326.1 160880358 5744532 2742410..2743444 1 NC_010001.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: cbf:CLI_2911 florfenicol/chloramphenicol resistance protein; chloramphenicol/florfenicol resistance protein 2743444 5744532 Cphy_2221 Clostridium phytofermentans ISDg chloramphenicol/florfenicol resistance protein YP_001559326.1 2742410 D 357809 CDS YP_001559327.1 160880359 5744533 complement(2743730..2744206) 1 NC_010001.1 hypothetical protein 2744206 5744533 Cphy_2222 Clostridium phytofermentans ISDg hypothetical protein YP_001559327.1 2743730 R 357809 CDS YP_001559328.1 160880360 5744534 complement(2744233..2744823) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mac:MA1701 acetyltransferase; N-acetyltransferase GCN5 2744823 5744534 Cphy_2223 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001559328.1 2744233 R 357809 CDS YP_001559329.1 160880361 5744536 complement(2745787..2746479) 1 NC_010001.1 KEGG: cbe:Cbei_2683 alpha/beta superfamily hydrolase; alpha/beta hydrolase 2746479 5744536 Cphy_2225 Clostridium phytofermentans ISDg alpha/beta hydrolase YP_001559329.1 2745787 R 357809 CDS YP_001559330.1 160880362 5744537 complement(2746563..2746889) 1 NC_010001.1 KEGG: tte:TTE1718 thiol-disulfide isomerase and thioredoxins; thiol-disulfide isomerase and thioredoxin 2746889 5744537 Cphy_2226 Clostridium phytofermentans ISDg thiol-disulfide isomerase and thioredoxin YP_001559330.1 2746563 R 357809 CDS YP_001559331.1 160880363 5744538 complement(2747288..2748205) 1 NC_010001.1 PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: cbf:CLI_2080 hypothetical protein; hypothetical protein 2748205 5744538 Cphy_2227 Clostridium phytofermentans ISDg hypothetical protein YP_001559331.1 2747288 R 357809 CDS YP_001559332.1 160880364 5744539 2748356..2749678 1 NC_010001.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; Helix-turn-helix type 11 domain protein; KEGG: bat:BAS2409 hypothetical protein; transcriptional regulator 2749678 5744539 Cphy_2228 Clostridium phytofermentans ISDg transcriptional regulator YP_001559332.1 2748356 D 357809 CDS YP_001559333.1 160880365 5744540 complement(2750045..2751046) 1 NC_010001.1 KEGG: ftw:FTW_0523 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 2751046 5744540 Cphy_2229 Clostridium phytofermentans ISDg glyceraldehyde-3-phosphate dehydrogenase, type I YP_001559333.1 2750045 R 357809 CDS YP_001559334.1 160880366 5744541 2751170..2752021 1 NC_010001.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_2860 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 2752021 5744541 Cphy_2230 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001559334.1 2751170 D 357809 CDS YP_001559335.1 160880367 5744542 complement(2752206..2752427) 1 NC_010001.1 hypothetical protein 2752427 5744542 Cphy_2231 Clostridium phytofermentans ISDg hypothetical protein YP_001559335.1 2752206 R 357809 CDS YP_001559336.1 160880368 5744543 2752855..2753613 1 NC_010001.1 KEGG: ckl:CKL_0345 predicted peptidoglycan biosynthesis protein; hypothetical protein 2753613 5744543 Cphy_2232 Clostridium phytofermentans ISDg hypothetical protein YP_001559336.1 2752855 D 357809 CDS YP_001559337.1 160880369 5744544 complement(2753821..2754471) 1 NC_010001.1 hypothetical protein 2754471 5744544 Cphy_2233 Clostridium phytofermentans ISDg hypothetical protein YP_001559337.1 2753821 R 357809 CDS YP_001559338.1 160880370 5744545 complement(2754464..2755159) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_2362 predicted ABC transporter, ATPase component; ABC transporter 2755159 5744545 Cphy_2234 Clostridium phytofermentans ISDg ABC transporter YP_001559338.1 2754464 R 357809 CDS YP_001559339.1 160880371 5744546 complement(2755152..2755505) 1 NC_010001.1 PFAM: regulatory protein GntR HTH; KEGG: cac:CAC0265 transcriptional regulator, GntR family; GntR family transcriptional regulator 2755505 5744546 Cphy_2235 Clostridium phytofermentans ISDg GntR family transcriptional regulator YP_001559339.1 2755152 R 357809 CDS YP_001559340.1 160880372 5744547 complement(2755898..2756701) 1 NC_010001.1 PFAM: Abortive infection protein; KEGG: dsy:DSY1578 hypothetical protein; abortive infection protein 2756701 5744547 Cphy_2236 Clostridium phytofermentans ISDg abortive infection protein YP_001559340.1 2755898 R 357809 CDS YP_001559341.1 160880373 5744548 complement(2756774..2758021) 1 NC_010001.1 PFAM: GHMP kinase; KEGG: dde:Dde_3653 galactokinase; galactokinase 2758021 5744548 Cphy_2237 Clostridium phytofermentans ISDg galactokinase YP_001559341.1 2756774 R 357809 CDS YP_001559342.1 160880374 5744549 complement(2758041..2758286) 1 NC_010001.1 hypothetical protein 2758286 5744549 Cphy_2238 Clostridium phytofermentans ISDg hypothetical protein YP_001559342.1 2758041 R 357809 CDS YP_001559343.1 160880375 5744550 2758623..2759510 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3411 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 2759510 5744550 Cphy_2239 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001559343.1 2758623 D 357809 CDS YP_001559344.1 160880376 5744551 complement(2759556..2760221) 1 NC_010001.1 KEGG: lmf:LMOf2365_0429 internalin; hypothetical protein 2760221 5744551 Cphy_2240 Clostridium phytofermentans ISDg hypothetical protein YP_001559344.1 2759556 R 357809 CDS YP_001559345.1 160880377 5744552 complement(2760521..2761603) 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: cpr:CPR_1343 MglC; monosaccharide-transporting ATPase 2761603 5744552 Cphy_2241 Clostridium phytofermentans ISDg monosaccharide-transporting ATPase YP_001559345.1 2760521 R 357809 CDS YP_001559346.1 160880378 5744553 complement(2761619..2763118) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fnu:FN1166 galactoside transport ATP-binding protein mglA; ABC transporter 2763118 5744553 Cphy_2242 Clostridium phytofermentans ISDg ABC transporter YP_001559346.1 2761619 R 357809 CDS YP_001559347.1 160880379 5745303 complement(2763191..2764294) 1 NC_010001.1 KEGG: cbe:Cbei_4434 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 2764294 5745303 Cphy_2243 Clostridium phytofermentans ISDg periplasmic binding protein/LacI transcriptional regulator YP_001559347.1 2763191 R 357809 CDS YP_001559348.1 160880380 5745306 2766142..2767005 1 NC_010001.1 KEGG: cac:CAC3385 hypothetical protein; hypothetical protein 2767005 5745306 Cphy_2246 Clostridium phytofermentans ISDg hypothetical protein YP_001559348.1 2766142 D 357809 CDS YP_001559349.1 160880381 5745307 2767050..2767346 1 NC_010001.1 KEGG: cac:CAC3385 hypothetical protein; hypothetical protein 2767346 5745307 Cphy_2247 Clostridium phytofermentans ISDg hypothetical protein YP_001559349.1 2767050 D 357809 CDS YP_001559350.1 160880382 5745308 2767598..2767906 1 NC_010001.1 KEGG: cac:CAC3386 hypothetical protein; hypothetical protein 2767906 5745308 Cphy_2248 Clostridium phytofermentans ISDg hypothetical protein YP_001559350.1 2767598 D 357809 CDS YP_001559351.1 160880383 5745309 complement(2768584..2769996) 1 NC_010001.1 hypothetical protein 2769996 5745309 Cphy_2249 Clostridium phytofermentans ISDg hypothetical protein YP_001559351.1 2768584 R 357809 CDS YP_001559352.1 160880384 5745310 complement(2770414..2770653) 1 NC_010001.1 hypothetical protein 2770653 5745310 Cphy_2250 Clostridium phytofermentans ISDg hypothetical protein YP_001559352.1 2770414 R 357809 CDS YP_001559353.1 160880385 5745311 complement(2771679..2772641) 1 NC_010001.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00907 D-ribose-binding periplasmic protein; periplasmic binding protein/LacI transcriptional regulator 2772641 5745311 Cphy_2251 Clostridium phytofermentans ISDg periplasmic binding protein/LacI transcriptional regulator YP_001559353.1 2771679 R 357809 CDS YP_001559354.1 160880386 5745312 complement(2772628..2774337) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; Cache domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4430 multi-sensor signal transduction histidine kinase; histidine kinase internal region 2774337 5745312 Cphy_2252 Clostridium phytofermentans ISDg histidine kinase internal region YP_001559354.1 2772628 R 357809 CDS YP_001559355.1 160880387 5745313 complement(2774354..2775952) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cbe:Cbei_4431 response regulator receiver protein; two component AraC family transcriptional regulator 2775952 5745313 Cphy_2253 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001559355.1 2774354 R 357809 CDS YP_001559356.1 160880388 5745314 complement(2776586..2777086) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tde:TDE2474 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2777086 5745314 Cphy_2254 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001559356.1 2776586 R 357809 CDS YP_001559357.1 160880389 5745315 complement(2777382..2778413) 1 NC_010001.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: amt:Amet_3206 FMN-dependent alpha-hydroxy acid dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 2778413 5745315 Cphy_2255 Clostridium phytofermentans ISDg FMN-dependent alpha-hydroxy acid dehydrogenase YP_001559357.1 2777382 R 357809 CDS YP_001559358.1 160880390 5745316 complement(2778835..2779296) 1 NC_010001.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: pmy:Pmen_4206 phosphodiesterase, MJ0936 family; phosphodiesterase 2779296 5745316 Cphy_2256 Clostridium phytofermentans ISDg phosphodiesterase YP_001559358.1 2778835 R 357809 CDS YP_001559359.1 160880391 5745317 complement(2779625..2781097) 1 NC_010001.1 PFAM: protein of unknown function DUF187; KEGG: btk:BT9727_0818 conserved hypothetical protein and possible S-layer protein fusion; hypothetical protein 2781097 5745317 Cphy_2257 Clostridium phytofermentans ISDg hypothetical protein YP_001559359.1 2779625 R 357809 CDS YP_001559360.1 160880392 5745318 complement(2781202..2783832) 1 NC_010001.1 PFAM: cell wall hydrolase/autolysin; copper amine oxidase domain protein; KEGG: amt:Amet_0953 N-acetylmuramoyl-L-alanine amidase; cell wall hydrolase/autolysin 2783832 5745318 Cphy_2258 Clostridium phytofermentans ISDg cell wall hydrolase/autolysin YP_001559360.1 2781202 R 357809 CDS YP_001559361.1 160880393 5745319 2784064..2784792 1 NC_010001.1 PFAM: PP-loop domain protein; KEGG: cth:Cthe_2181 predicted ATPase of the PP-loop superfamily implicated in cell cycle control; PP-loop domain-containing protein 2784792 5745319 Cphy_2259 Clostridium phytofermentans ISDg PP-loop domain-containing protein YP_001559361.1 2784064 D 357809 CDS YP_001559362.1 160880394 5745320 complement(2784920..2785681) 1 NC_010001.1 hypothetical protein 2785681 5745320 Cphy_2260 Clostridium phytofermentans ISDg hypothetical protein YP_001559362.1 2784920 R 357809 CDS YP_001559363.1 160880395 5745321 complement(2785803..2787524) 1 NC_010001.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: amt:Amet_0707 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/subunit 2787524 5745321 Cphy_2261 Clostridium phytofermentans ISDg phosphoglucomutase/phosphomannomutase alpha/beta/subunit YP_001559363.1 2785803 R 357809 CDS YP_001559364.1 160880396 5745322 complement(2788055..2789236) 1 NC_010001.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: csc:Csac_0294 N-acylglucosamine 2-epimerase; N-acylglucosamine 2-epimerase 2789236 5745322 Cphy_2262 Clostridium phytofermentans ISDg N-acylglucosamine 2-epimerase YP_001559364.1 2788055 R 357809 CDS YP_001559365.1 160880397 5745323 complement(2789493..2790608) 1 NC_010001.1 KEGG: cbh:CLC_2573 lipase/acylhydrolase, GDSL family; hypothetical protein 2790608 5745323 Cphy_2263 Clostridium phytofermentans ISDg hypothetical protein YP_001559365.1 2789493 R 357809 CDS YP_001559366.1 160880398 5745324 complement(2790617..2791639) 1 NC_010001.1 PFAM: glycosidase PH1107-related; KEGG: tma:TM1225 hypothetical protein; glycosidase PH1107-like protein 2791639 5745324 Cphy_2264 Clostridium phytofermentans ISDg glycosidase PH1107-like protein YP_001559366.1 2790617 R 357809 CDS YP_001559367.1 160880399 5745325 complement(2791741..2793189) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: cth:Cthe_1046 extracellular solute-binding protein, family 1; extracellular solute-binding protein 2793189 5745325 Cphy_2265 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001559367.1 2791741 R 357809 CDS YP_001559368.1 160880400 5745326 complement(2793236..2795134) 1 NC_010001.1 hypothetical protein 2795134 5745326 Cphy_2266 Clostridium phytofermentans ISDg hypothetical protein YP_001559368.1 2793236 R 357809 CDS YP_001559369.1 160880401 5745327 complement(2795272..2796264) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2413 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2796264 5745327 Cphy_2267 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001559369.1 2795272 R 357809 CDS YP_001559370.1 160880402 5745328 complement(2796278..2797195) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2414 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2797195 5745328 Cphy_2268 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001559370.1 2796278 R 357809 CDS YP_001559371.1 160880403 5745329 complement(2797161..2799770) 1 NC_010001.1 KEGG: csc:Csac_2415 hypothetical protein; hypothetical protein 2799770 5745329 Cphy_2269 Clostridium phytofermentans ISDg hypothetical protein YP_001559371.1 2797161 R 357809 CDS YP_001559372.1 160880404 5745331 complement(2801915..2802787) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2417 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2802787 5745331 Cphy_2272 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001559372.1 2801915 R 357809 CDS YP_001559373.1 160880405 5745332 complement(2802804..2803739) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2418 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2803739 5745332 Cphy_2273 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001559373.1 2802804 R 357809 CDS YP_001559374.1 160880406 5745333 complement(2803758..2806796) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_2419 extracellular solute-binding protein, family 1; extracellular solute-binding protein 2806796 5745333 Cphy_2274 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001559374.1 2803758 R 357809 CDS YP_001559375.1 160880407 5745334 complement(2806789..2807427) 1 NC_010001.1 KEGG: tte:TTE1959 hypothetical protein; hypothetical protein 2807427 5745334 Cphy_2275 Clostridium phytofermentans ISDg hypothetical protein YP_001559375.1 2806789 R 357809 CDS YP_001559376.1 160880408 5745335 complement(2807484..2809082) 1 NC_010001.1 PFAM: glycoside hydrolase family 26; Carbohydrate binding family 6; KEGG: cth:Cthe_2811 glycoside hydrolase, family 26; Mannan endo-1,4-beta-mannosidase 2809082 5745335 Cphy_2276 Clostridium phytofermentans ISDg Mannan endo-1,4-beta-mannosidase YP_001559376.1 2807484 R 357809 CDS YP_001559377.1 160880409 5745336 2809660..2810001 1 NC_010001.1 hypothetical protein 2810001 5745336 Cphy_2277 Clostridium phytofermentans ISDg hypothetical protein YP_001559377.1 2809660 D 357809 CDS YP_001559378.1 160880410 5745337 complement(2810437..2811483) 1 NC_010001.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cbe:Cbei_3881 regulatory protein, LacI; LacI family transcriptional regulator 2811483 5745337 Cphy_2278 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001559378.1 2810437 R 357809 CDS YP_001559379.1 160880411 5745338 2811948..2812523 1 NC_010001.1 KEGG: efa:EF0937 hypothetical protein; hypothetical protein 2812523 5745338 Cphy_2279 Clostridium phytofermentans ISDg hypothetical protein YP_001559379.1 2811948 D 357809 CDS YP_001559380.1 160880412 5745339 complement(2812772..2813866) 1 NC_010001.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 2813866 queA 5745339 queA Clostridium phytofermentans ISDg S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_001559380.1 2812772 R 357809 CDS YP_001559381.1 160880413 5745340 complement(2814137..2815828) 1 NC_010001.1 TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: amt:Amet_2340 SpoIID/LytB domain protein; SpoIID/LytB domain-containing protein 2815828 5745340 Cphy_2281 Clostridium phytofermentans ISDg SpoIID/LytB domain-containing protein YP_001559381.1 2814137 R 357809 CDS YP_001559382.1 160880414 5745341 2816022..2816549 1 NC_010001.1 hypothetical protein 2816549 5745341 Cphy_2282 Clostridium phytofermentans ISDg hypothetical protein YP_001559382.1 2816022 D 357809 CDS YP_001559383.1 160880415 5745342 complement(2816942..2817787) 1 NC_010001.1 KEGG: plu:plu1458 unnamed protein product; similar to streptomycin adenyltransferase; hypothetical protein 2817787 5745342 Cphy_2283 Clostridium phytofermentans ISDg hypothetical protein YP_001559383.1 2816942 R 357809 CDS YP_001559384.1 160880416 5745343 complement(2817806..2818384) 1 NC_010001.1 KEGG: cth:Cthe_0350 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 2818384 5745343 Cphy_2284 Clostridium phytofermentans ISDg signal peptidase I YP_001559384.1 2817806 R 357809 CDS YP_001559385.1 160880417 5745344 complement(2818734..2819411) 1 NC_010001.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 2819411 pyrE 5745344 pyrE Clostridium phytofermentans ISDg orotate phosphoribosyltransferase YP_001559385.1 2818734 R 357809 CDS YP_001559386.1 160880418 5745345 complement(2819471..2820373) 1 NC_010001.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 2820373 5745345 Cphy_2286 Clostridium phytofermentans ISDg dihydroorotate dehydrogenase 1B YP_001559386.1 2819471 R 357809 CDS YP_001559387.1 160880419 5745346 complement(2820492..2821262) 1 NC_010001.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: amt:Amet_4209 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit 2821262 5745346 Cphy_2287 Clostridium phytofermentans ISDg oxidoreductase FAD/NAD(P)-binding subunit YP_001559387.1 2820492 R 357809 CDS YP_001559388.1 160880420 5745347 complement(2821316..2821909) 1 NC_010001.1 KEGG: tde:TDE0164 hypothetical protein; hypothetical protein 2821909 5745347 Cphy_2288 Clostridium phytofermentans ISDg hypothetical protein YP_001559388.1 2821316 R 357809 CDS YP_001559389.1 160880421 5745348 complement(2821986..2823359) 1 NC_010001.1 PFAM: peptidase M23B; KEGG: bcl:ABC2951 metalloendopeptidase; peptidase M23B 2823359 5745348 Cphy_2289 Clostridium phytofermentans ISDg peptidase M23B YP_001559389.1 2821986 R 357809 CDS YP_001559390.1 160880422 5745349 2823526..2824149 1 NC_010001.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: ckl:CKL_1335 SigE1; FliA/WhiG family RNA polymerase sigma factor 2824149 5745349 Cphy_2290 Clostridium phytofermentans ISDg FliA/WhiG family RNA polymerase sigma factor YP_001559390.1 2823526 D 357809 CDS YP_001559391.1 160880423 5745350 complement(2824360..2825640) 1 NC_010001.1 PFAM: peptidase U32; KEGG: amt:Amet_2471 peptidase U32; peptidase U32 2825640 5745350 Cphy_2291 Clostridium phytofermentans ISDg peptidase U32 YP_001559391.1 2824360 R 357809 CDS YP_001559392.1 160880424 5745351 complement(2825780..2826499) 1 NC_010001.1 PFAM: O-methyltransferase family 3; KEGG: cbh:CLC_2427 O-methyltransferase family protein; O-methyltransferase family protein 2826499 5745351 Cphy_2292 Clostridium phytofermentans ISDg O-methyltransferase family protein YP_001559392.1 2825780 R 357809 CDS YP_001559393.1 160880425 5745352 complement(2826713..2827168) 1 NC_010001.1 hypothetical protein 2827168 5745352 Cphy_2293 Clostridium phytofermentans ISDg hypothetical protein YP_001559393.1 2826713 R 357809 CDS YP_001559394.1 160880426 5745353 complement(2827194..2829050) 1 NC_010001.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: cth:Cthe_1302 hypothetical protein; beta-lactamase domain-containing protein 2829050 5745353 Cphy_2294 Clostridium phytofermentans ISDg beta-lactamase domain-containing protein YP_001559394.1 2827194 R 357809 CDS YP_001559395.1 160880427 5745354 complement(2829110..2829589) 1 NC_010001.1 PFAM: ferric-uptake regulator; KEGG: cdf:CD1287 ferric uptake regulation protein; ferric uptake regulator family protein 2829589 5745354 Cphy_2295 Clostridium phytofermentans ISDg ferric uptake regulator family protein YP_001559395.1 2829110 R 357809 CDS YP_001559396.1 160880428 5745355 complement(2830062..2830334) 1 NC_010001.1 hypothetical protein 2830334 5745355 Cphy_2296 Clostridium phytofermentans ISDg hypothetical protein YP_001559396.1 2830062 R 357809 CDS YP_001559397.1 160880429 5745356 complement(2830432..2830884) 1 NC_010001.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: dsy:DSY2418 hypothetical protein; Holliday junction resolvase YqgF 2830884 5745356 Cphy_2297 Clostridium phytofermentans ISDg Holliday junction resolvase YqgF YP_001559397.1 2830432 R 357809 CDS YP_001559398.1 160880430 5745357 complement(2831000..2831266) 1 NC_010001.1 PFAM: protein of unknown function DUF965; KEGG: csc:Csac_1773 protein of unknown function DUF965; hypothetical protein 2831266 5745357 Cphy_2298 Clostridium phytofermentans ISDg hypothetical protein YP_001559398.1 2831000 R 357809 CDS YP_001559399.1 160880431 5745358 complement(2831394..2832794) 1 NC_010001.1 KEGG: tte:TTE0962 2-methylthioadenine synthetase; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme 2832794 5745358 Cphy_2299 Clostridium phytofermentans ISDg MiaB-like tRNA modifying enzyme YP_001559399.1 2831394 R 357809 CDS YP_001559400.1 160880432 5745359 2833053..2833286 1 NC_010001.1 PFAM: phosphocarrier HPr protein; KEGG: csc:Csac_1846 hypothetical protein; phosphotransferase system, phosphocarrier protein HPr 2833286 5745359 Cphy_2300 Clostridium phytofermentans ISDg phosphotransferase system, phosphocarrier protein HPr YP_001559400.1 2833053 D 357809 CDS YP_001559401.1 160880433 5745360 complement(2833335..2834510) 1 NC_010001.1 TIGRFAM: thiamine biosynthesis/tRNA modification protein ThiI; PFAM: thiamine biosynthesis protein; THUMP domain protein; ExsB family protein; KEGG: cth:Cthe_1063 thiamine biosynthesis/tRNA modification protein ThiI; thiamine biosynthesis/tRNA modification protein ThiI 2834510 5745360 Cphy_2301 Clostridium phytofermentans ISDg thiamine biosynthesis/tRNA modification protein ThiI YP_001559401.1 2833335 R 357809 CDS YP_001559402.1 160880434 5745361 complement(2834743..2835930) 1 NC_010001.1 PFAM: aminotransferase class V; KEGG: tte:TTE1663 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; class V aminotransferase 2835930 5745361 Cphy_2302 Clostridium phytofermentans ISDg class V aminotransferase YP_001559402.1 2834743 R 357809 CDS YP_001559403.1 160880435 5745362 complement(2836001..2836741) 1 NC_010001.1 PFAM: protein of unknown function DUF558; KEGG: cth:Cthe_1319 protein of unknown function DUF558; hypothetical protein 2836741 5745362 Cphy_2303 Clostridium phytofermentans ISDg hypothetical protein YP_001559403.1 2836001 R 357809 CDS YP_001559404.1 160880436 5745363 complement(2836995..2840126) 1 NC_010001.1 KEGG: cbe:Cbei_4135 pullulanase, type I; TIGRFAM: pullulanase, type I; PFAM: glycoside hydrolase family 13 domain protein; pullanase-associated protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; pullulanase, type I 2840126 5745363 Cphy_2304 Clostridium phytofermentans ISDg pullulanase, type I YP_001559404.1 2836995 R 357809 CDS YP_001559405.1 160880437 5745364 complement(2840111..2840968) 1 NC_010001.1 hypothetical protein 2840968 5745364 Cphy_2305 Clostridium phytofermentans ISDg hypothetical protein YP_001559405.1 2840111 R 357809 CDS YP_001559406.1 160880438 5745365 complement(2840949..2841791) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: btl:BALH_3631 maltosaccharide ABC transporter, permease; binding-protein-dependent transport system inner membrane protein 2841791 5745365 Cphy_2306 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001559406.1 2840949 R 357809 CDS YP_001559407.1 160880439 5745366 complement(2841802..2843130) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bca:BCE_4063 maltosaccharide ABC transporter, permease; binding-protein-dependent transport system inner membrane protein 2843130 5745366 Cphy_2307 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001559407.1 2841802 R 357809 CDS YP_001559408.1 160880440 5745367 complement(2843299..2844621) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA3175 maltose-binding periplasmic protein; extracellular solute-binding protein 2844621 5745367 Cphy_2308 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001559408.1 2843299 R 357809 CDS YP_001559409.1 160880441 5745368 complement(2845275..2846276) 1 NC_010001.1 TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; KEGG: cth:Cthe_1320 ribosomal protein L11 methyltransferase; 50S ribosomal protein L11 methyltransferase 2846276 5745368 Cphy_2309 Clostridium phytofermentans ISDg 50S ribosomal protein L11 methyltransferase YP_001559409.1 2845275 R 357809 CDS YP_001559410.1 160880442 5745369 complement(2846373..2847518) 1 NC_010001.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: tte:TTE0956 Molecular chaperones (contain C-terminal Zn finger domain); molecular chaperone DnaJ 2847518 5745369 Cphy_2310 Clostridium phytofermentans ISDg molecular chaperone DnaJ YP_001559410.1 2846373 R 357809 CDS YP_001559411.1 160880443 5745370 complement(2847865..2849727) 1 NC_010001.1 KEGG: cth:Cthe_1322 chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; molecular chaperone DnaK 2849727 5745370 Cphy_2311 Clostridium phytofermentans ISDg molecular chaperone DnaK YP_001559411.1 2847865 R 357809 CDS YP_001559412.1 160880444 5745371 complement(2849948..2850622) 1 NC_010001.1 PFAM: GrpE protein; KEGG: cth:Cthe_1323 GrpE protein; heat shock protein GrpE 2850622 5745371 Cphy_2312 Clostridium phytofermentans ISDg heat shock protein GrpE YP_001559412.1 2849948 R 357809 CDS YP_001559413.1 160880445 5745372 complement(2850644..2851681) 1 NC_010001.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: amt:Amet_3050 heat-inducible transcription repressor HrcA; heat-inducible transcription repressor HrcA 2851681 5745372 Cphy_2313 Clostridium phytofermentans ISDg heat-inducible transcription repressor HrcA YP_001559413.1 2850644 R 357809 CDS YP_001559414.1 160880446 5745373 complement(2851963..2853189) 1 NC_010001.1 KEGG: cdf:CD2464 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 2853189 5745373 Cphy_2314 Clostridium phytofermentans ISDg oxygen-independent coproporphyrinogen III oxidase YP_001559414.1 2851963 R 357809 CDS YP_001559415.1 160880447 5745374 complement(2853212..2855026) 1 NC_010001.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2855026 5745374 Cphy_2315 Clostridium phytofermentans ISDg GTP-binding protein LepA YP_001559415.1 2853212 R 357809 CDS YP_001559416.1 160880448 5745375 complement(2855781..2857232) 1 NC_010001.1 PFAM: Stage II sporulation P family protein; KEGG: cth:Cthe_1328 stage II sporulation P; stage II sporulation P family protein 2857232 5745375 Cphy_2316 Clostridium phytofermentans ISDg stage II sporulation P family protein YP_001559416.1 2855781 R 357809 CDS YP_001559417.1 160880449 5745376 complement(2857239..2858162) 1 NC_010001.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination; germination protease 2858162 5745376 Cphy_2317 Clostridium phytofermentans ISDg germination protease YP_001559417.1 2857239 R 357809 CDS YP_001559418.1 160880450 5745377 2858396..2858659 1 NC_010001.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 2858659 rpsT 5745377 rpsT Clostridium phytofermentans ISDg 30S ribosomal protein S20 YP_001559418.1 2858396 D 357809 CDS YP_001559419.1 160880451 5745378 2859263..2859625 1 NC_010001.1 PFAM: regulatory protein GntR HTH; KEGG: drm:Dred_3243 regulatory protein GntR, HTH; GntR family transcriptional regulator 2859625 5745378 Cphy_2319 Clostridium phytofermentans ISDg GntR family transcriptional regulator YP_001559419.1 2859263 D 357809 CDS YP_001559420.1 160880452 5745379 2859612..2860511 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lbu:LBUL_1588 ABC-type multidrug transport system, ATPase component; ABC transporter 2860511 5745379 Cphy_2320 Clostridium phytofermentans ISDg ABC transporter YP_001559420.1 2859612 D 357809 CDS YP_001559421.1 160880453 5745380 2860486..2862570 1 NC_010001.1 KEGG: amt:Amet_1325 hypothetical protein; hypothetical protein 2862570 5745380 Cphy_2321 Clostridium phytofermentans ISDg hypothetical protein YP_001559421.1 2860486 D 357809 CDS YP_001559422.1 160880454 5745381 complement(2862787..2863749) 1 NC_010001.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bvu:BVU_2307 GFO/IDH/MocA-family oxidoreductase; oxidoreductase domain-containing protein 2863749 5745381 Cphy_2322 Clostridium phytofermentans ISDg oxidoreductase domain-containing protein YP_001559422.1 2862787 R 357809 CDS YP_001559423.1 160880455 5745382 complement(2864265..2864483) 1 NC_010001.1 KEGG: ckl:CKL_3502 predicted penicillin binding protein; penicillin binding protein 2864483 5745382 Cphy_2323 Clostridium phytofermentans ISDg penicillin binding protein YP_001559423.1 2864265 R 357809 CDS YP_001559424.1 160880456 5745383 complement(2864490..2864849) 1 NC_010001.1 PFAM: Penicillinase repressor; KEGG: dsy:DSY0731 hypothetical protein; CopY family transcriptional regulator 2864849 5745383 Cphy_2324 Clostridium phytofermentans ISDg CopY family transcriptional regulator YP_001559424.1 2864490 R 357809 CDS YP_001559425.1 160880457 5745384 complement(2864987..2866246) 1 NC_010001.1 KEGG: cbe:Cbei_2116 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 2866246 5745384 Cphy_2325 Clostridium phytofermentans ISDg metal dependent phosphohydrolase YP_001559425.1 2864987 R 357809 CDS YP_001559426.1 160880458 5745385 complement(2866632..2867006) 1 NC_010001.1 hypothetical protein 2867006 5745385 Cphy_2326 Clostridium phytofermentans ISDg hypothetical protein YP_001559426.1 2866632 R 357809 CDS YP_001559427.1 160880459 5745386 2867086..2867580 1 NC_010001.1 PFAM: thioesterase superfamily protein; KEGG: bha:BH0798 acyl-CoA hydrolase; thioesterase superfamily protein 2867580 5745386 Cphy_2327 Clostridium phytofermentans ISDg thioesterase superfamily protein YP_001559427.1 2867086 D 357809 CDS YP_001559428.1 160880460 5745387 complement(2867825..2869000) 1 NC_010001.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 2869000 5745387 Cphy_2328 Clostridium phytofermentans ISDg transposase IS204/IS1001/IS1096/IS1165 family protein YP_001559428.1 2867825 R 357809 CDS YP_001559429.1 160880461 5745388 complement(2869332..2869994) 1 NC_010001.1 PFAM: deoxynucleoside kinase; KEGG: lin:lin1817 similar to deoxyguanosine kinase/deoxyadenosine kinase(I) subunit; deoxyadenosine kinase 2869994 5745388 Cphy_2329 Clostridium phytofermentans ISDg deoxyadenosine kinase YP_001559429.1 2869332 R 357809 CDS YP_001559430.1 160880462 5745389 complement(2870292..2871740) 1 NC_010001.1 hypothetical protein 2871740 5745389 Cphy_2330 Clostridium phytofermentans ISDg hypothetical protein YP_001559430.1 2870292 R 357809 CDS YP_001559431.1 160880463 5745390 complement(2872033..2873976) 1 NC_010001.1 KEGG: cpe:CPE1552 pullulanase; TIGRFAM: pullulanase, type I; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; pullulanase 2873976 5745390 Cphy_2331 Clostridium phytofermentans ISDg pullulanase YP_001559431.1 2872033 R 357809 CDS YP_001559432.1 160880464 5745391 complement(2874432..2875661) 1 NC_010001.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: lsl:LSL_1568 beta-N-acetylhexosaminidase; Beta-N-acetylhexosaminidase 2875661 5745391 Cphy_2332 Clostridium phytofermentans ISDg Beta-N-acetylhexosaminidase YP_001559432.1 2874432 R 357809 CDS YP_001559433.1 160880465 5745392 complement(2875953..2876390) 1 NC_010001.1 KEGG: tme:Tmel_1180 GatB/YqeY domain protein; GatB/YqeY domain-containing protein 2876390 5745392 Cphy_2333 Clostridium phytofermentans ISDg GatB/YqeY domain-containing protein YP_001559433.1 2875953 R 357809 CDS YP_001559434.1 160880466 5745393 2876608..2877192 1 NC_010001.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2877192 folE 5745393 folE Clostridium phytofermentans ISDg GTP cyclohydrolase I YP_001559434.1 2876608 D 357809 CDS YP_001559435.1 160880467 5745394 2877189..2877965 1 NC_010001.1 hypothetical protein 2877965 5745394 Cphy_2335 Clostridium phytofermentans ISDg hypothetical protein YP_001559435.1 2877189 D 357809 CDS YP_001559436.1 160880468 5745395 complement(2878244..2880664) 1 NC_010001.1 PFAM: glycosyl transferase group 1; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: ecc:c3694 hypothetical protein; group 1 glycosyl transferase 2880664 5745395 Cphy_2336 Clostridium phytofermentans ISDg group 1 glycosyl transferase YP_001559436.1 2878244 R 357809 CDS YP_001559437.1 160880469 5745396 complement(2881225..2882073) 1 NC_010001.1 PFAM: diaminopimelate epimerase; KEGG: mmw:Mmwyl1_0680 diaminopimelate epimerase; diaminopimelate epimerase 2882073 5745396 Cphy_2337 Clostridium phytofermentans ISDg diaminopimelate epimerase YP_001559437.1 2881225 R 357809 CDS YP_001559438.1 160880470 5745397 2882581..2883465 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cac:CAC2818 AraC-type DNA-binding domain-containing protein, transcriptional regulator; AraC family transcriptional regulator 2883465 5745397 Cphy_2338 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001559438.1 2882581 D 357809 CDS YP_001559439.1 160880471 5745398 complement(2883550..2884353) 1 NC_010001.1 PFAM: protein of unknown function DUF214; KEGG: btk:BT9727_3141 ABC transporter, permease; hypothetical protein 2884353 5745398 Cphy_2339 Clostridium phytofermentans ISDg hypothetical protein YP_001559439.1 2883550 R 357809 CDS YP_001559440.1 160880472 5745399 complement(2884437..2885246) 1 NC_010001.1 KEGG: btk:BT9727_3141 ABC transporter, permease; lipoprotein release permease-like protein 2885246 5745399 Cphy_2340 Clostridium phytofermentans ISDg lipoprotein release permease-like protein YP_001559440.1 2884437 R 357809 CDS YP_001559441.1 160880473 5745400 complement(2885548..2887212) 1 NC_010001.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gka:GK0615 exo-alpha-1,4-glucosidase; alpha amylase 2887212 5745400 Cphy_2341 Clostridium phytofermentans ISDg alpha amylase YP_001559441.1 2885548 R 357809 CDS YP_001559442.1 160880474 5745401 complement(2887378..2888994) 1 NC_010001.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cbe:Cbei_0735 alpha amylase, catalytic region; alpha amylase 2888994 5745401 Cphy_2342 Clostridium phytofermentans ISDg alpha amylase YP_001559442.1 2887378 R 357809 CDS YP_001559443.1 160880475 5745402 complement(2889298..2891253) 1 NC_010001.1 TIGRFAM: glycogen debranching enzyme; PFAM: Amylo-alpha-16-glucosidase; KEGG: vfi:VF2048 amylo-1,6-glucosidase; glycogen debranching protein 2891253 5745402 Cphy_2343 Clostridium phytofermentans ISDg glycogen debranching protein YP_001559443.1 2889298 R 357809 CDS YP_001559444.1 160880476 5745403 complement(2891543..2893270) 1 NC_010001.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: llm:llmg_0743 alpha-amylase; alpha amylase catalytic region 2893270 5745403 Cphy_2344 Clostridium phytofermentans ISDg alpha amylase catalytic region YP_001559444.1 2891543 R 357809 CDS YP_001559445.1 160880477 5745404 complement(2893664..2894530) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF1343 sugar ABC transporter, permease; binding-protein-dependent transport system inner membrane protein 2894530 5745404 Cphy_2345 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001559445.1 2893664 R 357809 CDS YP_001559446.1 160880478 5745405 complement(2894530..2895924) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF1344 sugar ABC transporter, permease; fructose-bisphosphate aldolase 2895924 5745405 Cphy_2346 Clostridium phytofermentans ISDg fructose-bisphosphate aldolase YP_001559446.1 2894530 R 357809 CDS YP_001559447.1 160880479 5745406 complement(2896060..2897355) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: cdi:DIP0534 sugar-binding secreted protein; extracellular solute-binding protein 2897355 5745406 Cphy_2347 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001559447.1 2896060 R 357809 CDS YP_001559448.1 160880480 5745407 complement(2897538..2899787) 1 NC_010001.1 KEGG: cbe:Cbei_0285 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 2899787 5745407 Cphy_2348 Clostridium phytofermentans ISDg glycogen/starch/alpha-glucan phosphorylase YP_001559448.1 2897538 R 357809 CDS YP_001559449.1 160880481 5745408 complement(2899812..2901263) 1 NC_010001.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 2901263 5745408 Cphy_2349 Clostridium phytofermentans ISDg 4-alpha-glucanotransferase YP_001559449.1 2899812 R 357809 CDS YP_001559450.1 160880482 5745409 complement(2901320..2903071) 1 NC_010001.1 PFAM: glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gtn:GTNG_0610 neopullulanase; alpha amylase 2903071 5745409 Cphy_2350 Clostridium phytofermentans ISDg alpha amylase YP_001559450.1 2901320 R 357809 CDS YP_001559451.1 160880483 5745410 complement(2903218..2904213) 1 NC_010001.1 PFAM: regulatory protein LacI; KEGG: bha:BH3692 transcriptional regulator; LacI family transcriptional regulator 2904213 5745410 Cphy_2351 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001559451.1 2903218 R 357809 CDS YP_001559452.1 160880484 5745411 complement(2904477..2905811) 1 NC_010001.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase 2905811 5745411 Cphy_2352 Clostridium phytofermentans ISDg aspartate kinase YP_001559452.1 2904477 R 357809 CDS YP_001559453.1 160880485 5745412 2906185..2907177 1 NC_010001.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: csc:Csac_0443 alanine racemase; LacI family transcriptional regulator 2907177 5745412 Cphy_2353 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001559453.1 2906185 D 357809 CDS YP_001559454.1 160880486 5745413 complement(2907502..2907831) 1 NC_010001.1 PFAM: Penicillinase repressor; KEGG: cdf:CD0547 penicillin-binding protein repressor; CopY family transcriptional regulator 2907831 5745413 Cphy_2354 Clostridium phytofermentans ISDg CopY family transcriptional regulator YP_001559454.1 2907502 R 357809 CDS YP_001559455.1 160880487 5745414 complement(2908013..2909308) 1 NC_010001.1 KEGG: dsy:DSY0184 hypothetical protein; ATPase AAA 2909308 5745414 Cphy_2355 Clostridium phytofermentans ISDg ATPase AAA YP_001559455.1 2908013 R 357809 CDS YP_001559456.1 160880488 5745415 complement(2909309..2910250) 1 NC_010001.1 KEGG: pth:PTH_1818 pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 2910250 5745415 Cphy_2356 Clostridium phytofermentans ISDg RluA family pseudouridine synthase YP_001559456.1 2909309 R 357809 CDS YP_001559457.1 160880489 5745416 complement(2910362..2910886) 1 NC_010001.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 2910886 5745416 Cphy_2357 Clostridium phytofermentans ISDg lipoprotein signal peptidase YP_001559457.1 2910362 R 357809 CDS YP_001559458.1 160880490 5745417 complement(2910893..2911996) 1 NC_010001.1 PFAM: 3-dehydroquinate synthase; KEGG: cth:Cthe_0786 3-dehydroquinate synthase; 3-dehydroquinate synthase 2911996 5745417 Cphy_2358 Clostridium phytofermentans ISDg 3-dehydroquinate synthase YP_001559458.1 2910893 R 357809 CDS YP_001559459.1 160880491 5745418 complement(2912011..2912949) 1 NC_010001.1 PFAM: DivIVA family protein; KEGG: csc:Csac_1911 DivIVA family protein; DivIVA family protein 2912949 5745418 Cphy_2359 Clostridium phytofermentans ISDg DivIVA family protein YP_001559459.1 2912011 R 357809 CDS YP_001559460.1 160880492 5745419 complement(2912962..2913753) 1 NC_010001.1 PFAM: RNA-binding S4 domain protein; KEGG: cdf:CD2620 RNA-binding cell division protein; RNA-binding S4 domain-containing protein 2913753 5745419 Cphy_2360 Clostridium phytofermentans ISDg RNA-binding S4 domain-containing protein YP_001559460.1 2912962 R 357809 CDS YP_001559461.1 160880493 5745420 complement(2914032..2914652) 1 NC_010001.1 PFAM: protein of unknown function DUF552; KEGG: ssp:SSP1582 hypothetical protein; hypothetical protein 2914652 5745420 Cphy_2361 Clostridium phytofermentans ISDg hypothetical protein YP_001559461.1 2914032 R 357809 CDS YP_001559462.1 160880494 5745421 complement(2914674..2915435) 1 NC_010001.1 PFAM: alanine racemase domain protein; KEGG: cth:Cthe_0792 protein of unknown function UPF0001; alanine racemase 2915435 5745421 Cphy_2362 Clostridium phytofermentans ISDg alanine racemase YP_001559462.1 2914674 R 357809 CDS YP_001559463.1 160880495 5745422 complement(2915508..2916896) 1 NC_010001.1 KEGG: tte:TTE1601 membrane-fusion protein; hypothetical protein 2916896 5745422 Cphy_2363 Clostridium phytofermentans ISDg hypothetical protein YP_001559463.1 2915508 R 357809 CDS YP_001559464.1 160880496 5745423 2917000..2917203 1 NC_010001.1 PFAM: protein of unknown function DUF378; KEGG: cbf:CLI_0507 hypothetical protein; hypothetical protein 2917203 5745423 Cphy_2364 Clostridium phytofermentans ISDg hypothetical protein YP_001559464.1 2917000 D 357809 CDS YP_001559465.1 160880497 5745424 complement(2917459..2917923) 1 NC_010001.1 KEGG: amt:Amet_3681 hypothetical protein; hypothetical protein 2917923 5745424 Cphy_2365 Clostridium phytofermentans ISDg hypothetical protein YP_001559465.1 2917459 R 357809 CDS YP_001559466.1 160880498 5745425 complement(2918029..2919057) 1 NC_010001.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: tte:TTE0925 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 2919057 5745425 Cphy_2366 Clostridium phytofermentans ISDg serine-type D-Ala-D-Ala carboxypeptidase YP_001559466.1 2918029 R 357809 CDS YP_001559467.1 160880499 5745426 complement(2919035..2919436) 1 NC_010001.1 KEGG: csc:Csac_1874 methylglyoxal synthase; TIGRFAM: methylglyoxal synthase; PFAM: MGS domain protein; methylglyoxal synthase 2919436 5745426 Cphy_2367 Clostridium phytofermentans ISDg methylglyoxal synthase YP_001559467.1 2919035 R 357809 CDS YP_001559468.1 160880500 5745427 complement(2919458..2920627) 1 NC_010001.1 PFAM: cell cycle protein; KEGG: cbf:CLI_0695 rod shape-determining protein RodA; cell cycle protein 2920627 5745427 Cphy_2368 Clostridium phytofermentans ISDg cell cycle protein YP_001559468.1 2919458 R 357809 CDS YP_001559469.1 160880501 5745428 complement(2920640..2920912) 1 NC_010001.1 TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: csc:Csac_1872 cell division topological specificity factor MinE; cell division topological specificity factor MinE 2920912 5745428 Cphy_2369 Clostridium phytofermentans ISDg cell division topological specificity factor MinE YP_001559469.1 2920640 R 357809 CDS YP_001559470.1 160880502 5745429 complement(2920926..2921708) 1 NC_010001.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cth:Cthe_0093 septum site-determining protein MinD; septum site-determining protein MinD 2921708 5745429 Cphy_2370 Clostridium phytofermentans ISDg septum site-determining protein MinD YP_001559470.1 2920926 R 357809 CDS YP_001559471.1 160880503 5742441 complement(2921784..2922449) 1 NC_010001.1 TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: csc:Csac_1870 septum site-determining protein MinC; septum site-determining protein MinC 2922449 5742441 Cphy_2371 Clostridium phytofermentans ISDg septum site-determining protein MinC YP_001559471.1 2921784 R 357809 CDS YP_001559472.1 160880504 5742442 complement(2922529..2925378) 1 NC_010001.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: csc:Csac_1869 peptidoglycan glycosyltransferase; penicillin-binding protein transpeptidase 2925378 5742442 Cphy_2372 Clostridium phytofermentans ISDg penicillin-binding protein transpeptidase YP_001559472.1 2922529 R 357809 CDS YP_001559473.1 160880505 5742443 complement(2925378..2925887) 1 NC_010001.1 KEGG: cth:Cthe_0090 hypothetical protein; hypothetical protein 2925887 5742443 Cphy_2373 Clostridium phytofermentans ISDg hypothetical protein YP_001559473.1 2925378 R 357809 CDS YP_001559474.1 160880506 5742444 complement(2925917..2926777) 1 NC_010001.1 TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: cth:Cthe_0089 rod shape-determining protein MreC; rod shape-determining protein MreC 2926777 5742444 Cphy_2374 Clostridium phytofermentans ISDg rod shape-determining protein MreC YP_001559474.1 2925917 R 357809 CDS YP_001559475.1 160880507 5742445 complement(2927022..2928047) 1 NC_010001.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 2928047 5742445 Cphy_2375 Clostridium phytofermentans ISDg rod shape-determining protein MreB YP_001559475.1 2927022 R 357809 CDS YP_001559476.1 160880508 5742446 complement(2928106..2928804) 1 NC_010001.1 PFAM: DNA repair protein RadC; KEGG: cbh:CLC_2900 DNA repair protein, RadC family; DNA repair protein RadC 2928804 5742446 Cphy_2376 Clostridium phytofermentans ISDg DNA repair protein RadC YP_001559476.1 2928106 R 357809 CDS YP_001559477.1 160880509 5742447 complement(2928840..2929115) 1 NC_010001.1 KEGG: tte:TTE0895 hypothetical protein; hypothetical protein 2929115 5742447 Cphy_2377 Clostridium phytofermentans ISDg hypothetical protein YP_001559477.1 2928840 R 357809 CDS YP_001559478.1 160880510 5742448 complement(2929296..2930600) 1 NC_010001.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; Aluminium resistance family protein; KEGG: cth:Cthe_0794 aluminium resistance protein; aluminum resistance protein 2930600 5742448 Cphy_2378 Clostridium phytofermentans ISDg aluminum resistance protein YP_001559478.1 2929296 R 357809 CDS YP_001559479.1 160880511 5742449 complement(2930644..2931585) 1 NC_010001.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 2931585 miaA 5742449 miaA Clostridium phytofermentans ISDg tRNA delta(2)-isopentenylpyrophosphate transferase YP_001559479.1 2930644 R 357809 CDS YP_001559480.1 160880512 5742450 complement(2931648..2933735) 1 NC_010001.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: cth:Cthe_0776 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL 2933735 5742450 Cphy_2380 Clostridium phytofermentans ISDg DNA mismatch repair protein MutL YP_001559480.1 2931648 R 357809 CDS YP_001559481.1 160880513 5742451 complement(2933768..2936566) 1 NC_010001.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 2936566 5742451 Cphy_2381 Clostridium phytofermentans ISDg DNA mismatch repair protein MutS YP_001559481.1 2933768 R 357809 CDS YP_001559482.1 160880514 5742452 complement(2936645..2937121) 1 NC_010001.1 PFAM: ribonuclease H; KEGG: esa:ESA_03125 hypothetical protein; ribonuclease H 2937121 5742452 Cphy_2382 Clostridium phytofermentans ISDg ribonuclease H YP_001559482.1 2936645 R 357809 CDS YP_001559483.1 160880515 5742453 complement(2937149..2938825) 1 NC_010001.1 PFAM: DNA mismatch repair protein MutS domain protein; KEGG: cpr:CPR_0886 MutS domain V protein; DNA mismatch repair protein MutS domain-containing protein 2938825 5742453 Cphy_2383 Clostridium phytofermentans ISDg DNA mismatch repair protein MutS domain-containing protein YP_001559483.1 2937149 R 357809 CDS YP_001559484.1 160880516 5742454 complement(2939254..2940348) 1 NC_010001.1 PFAM: NLP/P60 protein; SH3 type 3 domain protein; KEGG: csc:Csac_1052 NLP/P60 protein; NLP/P60 protein 2940348 5742454 Cphy_2384 Clostridium phytofermentans ISDg NLP/P60 protein YP_001559484.1 2939254 R 357809 CDS YP_001559485.1 160880517 5742455 complement(2940819..2942294) 1 NC_010001.1 TIGRFAM: stage IV sporulation protein A; PFAM: Sporulation stage IV protein A; KEGG: cth:Cthe_1021 stage IV sporulation protein A; stage IV sporulation protein A 2942294 5742455 Cphy_2385 Clostridium phytofermentans ISDg stage IV sporulation protein A YP_001559485.1 2940819 R 357809 CDS YP_001559486.1 160880518 5742456 complement(2942359..2942988) 1 NC_010001.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2942988 5742456 Cphy_2386 Clostridium phytofermentans ISDg uridine kinase YP_001559486.1 2942359 R 357809 CDS YP_001559487.1 160880519 5742457 complement(2943024..2943665) 1 NC_010001.1 PFAM: Ribose/galactose isomerase; KEGG: cac:CAC2606 hypothetical protein; hypothetical protein 2943665 5742457 Cphy_2387 Clostridium phytofermentans ISDg hypothetical protein YP_001559487.1 2943024 R 357809 CDS YP_001559488.1 160880520 5742458 complement(2943682..2944686) 1 NC_010001.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 2944686 gpsA 5742458 gpsA Clostridium phytofermentans ISDg NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001559488.1 2943682 R 357809 CDS YP_001559489.1 160880521 5742459 complement(2944741..2945370) 1 NC_010001.1 PFAM: protein of unknown function DUF205; KEGG: cdf:CD2631 hypothetical protein; hypothetical protein 2945370 5742459 Cphy_2389 Clostridium phytofermentans ISDg hypothetical protein YP_001559489.1 2944741 R 357809 CDS YP_001559490.1 160880522 5742460 complement(2945392..2946717) 1 NC_010001.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2946717 engA 5742460 engA Clostridium phytofermentans ISDg GTP-binding protein EngA YP_001559490.1 2945392 R 357809 CDS YP_001559491.1 160880523 5742461 complement(2946866..2948218) 1 NC_010001.1 PFAM: protein of unknown function DUF512; KEGG: cth:Cthe_1025 protein of unknown function DUF512; hypothetical protein 2948218 5742461 Cphy_2391 Clostridium phytofermentans ISDg hypothetical protein YP_001559491.1 2946866 R 357809 CDS YP_001559492.1 160880524 5742462 2948617..2949789 1 NC_010001.1 PFAM: periplasmic binding protein; KEGG: dsy:DSY3874 hypothetical protein; periplasmic binding protein 2949789 5742462 Cphy_2392 Clostridium phytofermentans ISDg periplasmic binding protein YP_001559492.1 2948617 D 357809 CDS YP_001559493.1 160880525 5742463 2949786..2950859 1 NC_010001.1 PFAM: transport system permease; ABC-3 protein; KEGG: bpu:BPUM_3521 iron (Fe) ABC superfamily ATP binding cassette transporter, membrane protein; transport system permease 2950859 5742463 Cphy_2393 Clostridium phytofermentans ISDg transport system permease YP_001559493.1 2949786 D 357809 CDS YP_001559494.1 160880526 5742464 2950852..2951610 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VPA1652 ATP-binding component of citrate-dependent iron(III) transport protein; ABC transporter 2951610 5742464 Cphy_2394 Clostridium phytofermentans ISDg ABC transporter YP_001559494.1 2950852 D 357809 CDS YP_001559495.1 160880527 5742465 2951678..2952850 1 NC_010001.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 2952850 5742465 Cphy_2395 Clostridium phytofermentans ISDg phosphoribosylpyrophosphate synthetase YP_001559495.1 2951678 D 357809 CDS YP_001559496.1 160880528 5742466 2952992..2953633 1 NC_010001.1 PFAM: protein of unknown function DUF204; KEGG: cno:NT01CX_0960 hypothetical protein; hypothetical protein 2953633 5742466 Cphy_2396 Clostridium phytofermentans ISDg hypothetical protein YP_001559496.1 2952992 D 357809 CDS YP_001559497.1 160880529 5742467 complement(2953967..2954848) 1 NC_010001.1 PFAM: protein of unknown function DUF152; KEGG: cth:Cthe_0911 protein of unknown function DUF152; hypothetical protein 2954848 5742467 Cphy_2397 Clostridium phytofermentans ISDg hypothetical protein YP_001559497.1 2953967 R 357809 CDS YP_001559498.1 160880530 5742468 complement(2954968..2955324) 1 NC_010001.1 PFAM: protein of unknown function UPF0102; KEGG: cdf:CD1271 hypothetical protein; hypothetical protein 2955324 5742468 Cphy_2398 Clostridium phytofermentans ISDg hypothetical protein YP_001559498.1 2954968 R 357809 CDS YP_001559499.1 160880531 5742469 complement(2955317..2955685) 1 NC_010001.1 KEGG: csc:Csac_2149 cytoplasmic domain of flagellar protein FhlB-like protein; flagellar protein FhlB-like protein 2955685 5742469 Cphy_2399 Clostridium phytofermentans ISDg flagellar protein FhlB-like protein YP_001559499.1 2955317 R 357809 CDS YP_001559500.1 160880532 5742470 complement(2955849..2956613) 1 NC_010001.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 2956613 rnhB 5742470 rnhB Clostridium phytofermentans ISDg ribonuclease HII YP_001559500.1 2955849 R 357809 CDS YP_001559501.1 160880533 5742471 complement(2956618..2957496) 1 NC_010001.1 PFAM: GTP-binding protein HSR1-related; KEGG: cth:Cthe_0763 GTP-binding protein; GTP-binding protein HSR1-related 2957496 5742471 Cphy_2401 Clostridium phytofermentans ISDg GTP-binding protein HSR1-related YP_001559501.1 2956618 R 357809 CDS YP_001559502.1 160880534 5742472 complement(2957572..2958216) 1 NC_010001.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: ckl:CKL_1407 hypothetical protein; signal peptidase I 2958216 5742472 Cphy_2402 Clostridium phytofermentans ISDg signal peptidase I YP_001559502.1 2957572 R 357809 CDS YP_001559503.1 160880535 5742473 complement(2958590..2958937) 1 NC_010001.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 2958937 rplS 5742473 rplS Clostridium phytofermentans ISDg 50S ribosomal protein L19 YP_001559503.1 2958590 R 357809 CDS YP_001559504.1 160880536 5742474 complement(2959258..2960580) 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: cpe:CPE1484 hypothetical protein; MATE efflux family protein 2960580 5742474 Cphy_2404 Clostridium phytofermentans ISDg MATE efflux family protein YP_001559504.1 2959258 R 357809 CDS YP_001559505.1 160880537 5742475 complement(2960829..2961656) 1 NC_010001.1 KEGG: cdf:CD1256 tRNA (guanine-n(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase 2961656 5742475 Cphy_2405 Clostridium phytofermentans ISDg tRNA (guanine-N1)-methyltransferase YP_001559505.1 2960829 R 357809 CDS YP_001559506.1 160880538 5742476 complement(2961794..2962303) 1 NC_010001.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 2962303 rimM 5742476 rimM Clostridium phytofermentans ISDg 16S rRNA-processing protein RimM YP_001559506.1 2961794 R 357809 CDS YP_001559507.1 160880539 5742477 complement(2962544..2962774) 1 NC_010001.1 KEGG: pth:PTH_1722 predicted RNA binding protein; RNA binding protein 2962774 5742477 Cphy_2407 Clostridium phytofermentans ISDg RNA binding protein YP_001559507.1 2962544 R 357809 CDS YP_001559508.1 160880540 5742478 complement(2962791..2963036) 1 NC_010001.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2963036 rpsP 5742478 rpsP Clostridium phytofermentans ISDg 30S ribosomal protein S16 YP_001559508.1 2962791 R 357809 CDS YP_001559509.1 160880541 5742479 complement(2963227..2964591) 1 NC_010001.1 KEGG: cdf:CD1252 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein 2964591 5742479 Cphy_2409 Clostridium phytofermentans ISDg signal recognition particle protein YP_001559509.1 2963227 R 357809 CDS YP_001559510.1 160880542 5742480 complement(2964691..2965071) 1 NC_010001.1 PFAM: helix-turn-helix protein YlxM/p13 family protein; KEGG: ctc:CTC01247 hypothetical protein; helix-turn-helix protein YlxM/p13 family protein 2965071 5742480 Cphy_2410 Clostridium phytofermentans ISDg helix-turn-helix protein YlxM/p13 family protein YP_001559510.1 2964691 R 357809 CDS YP_001559511.1 160880543 5742481 complement(2965324..2965683) 1 NC_010001.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_3364 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 2965683 5742481 Cphy_2411 Clostridium phytofermentans ISDg glyoxalase/bleomycin resistance protein/dioxygenase YP_001559511.1 2965324 R 357809 CDS YP_001559512.1 160880544 5742483 complement(2965828..2966631) 1 NC_010001.1 hypothetical protein 2966631 5742483 Cphy_2412 Clostridium phytofermentans ISDg hypothetical protein YP_001559512.1 2965828 R 357809 CDS YP_001559513.1 160880545 5742484 complement(2966698..2967021) 1 NC_010001.1 hypothetical protein 2967021 5742484 Cphy_2413 Clostridium phytofermentans ISDg hypothetical protein YP_001559513.1 2966698 R 357809 CDS YP_001559514.1 160880546 5742485 complement(2967035..2968117) 1 NC_010001.1 KEGG: pto:PTO0127 transporter; hypothetical protein 2968117 5742485 Cphy_2414 Clostridium phytofermentans ISDg hypothetical protein YP_001559514.1 2967035 R 357809 CDS YP_001559515.1 160880547 5742486 2968345..2969244 1 NC_010001.1 KEGG: sma:SAV6238 hypothetical protein; hypothetical protein 2969244 5742486 Cphy_2415 Clostridium phytofermentans ISDg hypothetical protein YP_001559515.1 2968345 D 357809 CDS YP_001559516.1 160880548 5742487 complement(2969331..2970092) 1 NC_010001.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: cac:CAC0851 ortholog YgiD E.coli; extradiol ring-cleavage dioxygenase class III protein subunit B 2970092 5742487 Cphy_2416 Clostridium phytofermentans ISDg extradiol ring-cleavage dioxygenase class III protein subunit B YP_001559516.1 2969331 R 357809 CDS YP_001559517.1 160880549 5742488 complement(2970301..2971149) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbf:CLI_1070 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2971149 5742488 Cphy_2417 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001559517.1 2970301 R 357809 CDS YP_001559518.1 160880550 5742489 complement(2971306..2972706) 1 NC_010001.1 PFAM: Aldehyde Dehydrogenase_; KEGG: cbe:Cbei_2282 aldehyde dehydrogenase; aldehyde dehydrogenase 2972706 5742489 Cphy_2418 Clostridium phytofermentans ISDg aldehyde dehydrogenase YP_001559518.1 2971306 R 357809 CDS YP_001559519.1 160880551 5742490 2973301..2973690 1 NC_010001.1 KEGG: amt:Amet_3947 hypothetical protein; hypothetical protein 2973690 5742490 Cphy_2419 Clostridium phytofermentans ISDg hypothetical protein YP_001559519.1 2973301 D 357809 CDS YP_001559520.1 160880552 5742491 2973710..2974153 1 NC_010001.1 KEGG: cpf:CPF_0333 hypothetical protein; hypothetical protein 2974153 5742491 Cphy_2420 Clostridium phytofermentans ISDg hypothetical protein YP_001559520.1 2973710 D 357809 CDS YP_001559521.1 160880553 5742492 2974606..2974827 1 NC_010001.1 KEGG: amt:Amet_3944 membrane protein; membrane protein 2974827 5742492 Cphy_2421 Clostridium phytofermentans ISDg membrane protein YP_001559521.1 2974606 D 357809 CDS YP_001559522.1 160880554 5742493 complement(2974984..2975700) 1 NC_010001.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: lbl:LBL_2334 rRNA methylase; tRNA/rRNA methyltransferase SpoU 2975700 5742493 Cphy_2422 Clostridium phytofermentans ISDg tRNA/rRNA methyltransferase SpoU YP_001559522.1 2974984 R 357809 CDS YP_001559523.1 160880555 5742494 complement(2975784..2976674) 1 NC_010001.1 KEGG: cbe:Cbei_2773 hypothetical protein; hypothetical protein 2976674 5742494 Cphy_2423 Clostridium phytofermentans ISDg hypothetical protein YP_001559523.1 2975784 R 357809 CDS YP_001559524.1 160880556 5742495 2976818..2977018 1 NC_010001.1 PFAM: helix-turn-helix domain protein; KEGG: cbe:Cbei_3549 transcriptional regulator, XRE family; XRE family transcriptional regulator 2977018 5742495 Cphy_2424 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001559524.1 2976818 D 357809 CDS YP_001559525.1 160880557 5742496 2977063..2977500 1 NC_010001.1 KEGG: dsy:DSY0156 hypothetical protein; hypothetical protein 2977500 5742496 Cphy_2425 Clostridium phytofermentans ISDg hypothetical protein YP_001559525.1 2977063 D 357809 CDS YP_001559526.1 160880558 5742497 complement(2977634..2977888) 1 NC_010001.1 hypothetical protein 2977888 5742497 Cphy_2426 Clostridium phytofermentans ISDg hypothetical protein YP_001559526.1 2977634 R 357809 CDS YP_001559527.1 160880559 5742498 complement(2977852..2978220) 1 NC_010001.1 hypothetical protein 2978220 5742498 Cphy_2427 Clostridium phytofermentans ISDg hypothetical protein YP_001559527.1 2977852 R 357809 CDS YP_001559528.1 160880560 5742499 complement(2978265..2979665) 1 NC_010001.1 PFAM: Ig domain protein group 2 domain protein; SMART: transglutaminase domain protein; KEGG: bcz:BCZK0884 S-layer protein; Ig domain-containing protein 2979665 5742499 Cphy_2428 Clostridium phytofermentans ISDg Ig domain-containing protein YP_001559528.1 2978265 R 357809 CDS YP_001559529.1 160880561 5742500 complement(2980255..2982114) 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0397 ABC transporter related protein; ABC transporter 2982114 5742500 Cphy_2429 Clostridium phytofermentans ISDg ABC transporter YP_001559529.1 2980255 R 357809 CDS YP_001559530.1 160880562 5742501 complement(2982111..2983838) 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0396 ABC transporter related protein; ABC transporter 2983838 5742501 Cphy_2430 Clostridium phytofermentans ISDg ABC transporter YP_001559530.1 2982111 R 357809 CDS YP_001559531.1 160880563 5742502 2984205..2985104 1 NC_010001.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cac:CAC2394 transcriptional regulator, LysR family; LysR family transcriptional regulator 2985104 5742502 Cphy_2431 Clostridium phytofermentans ISDg LysR family transcriptional regulator YP_001559531.1 2984205 D 357809 CDS YP_001559532.1 160880564 5742503 complement(2985305..2986585) 1 NC_010001.1 KEGG: pna:Pnap_4854 hypothetical protein; hypothetical protein 2986585 5742503 Cphy_2432 Clostridium phytofermentans ISDg hypothetical protein YP_001559532.1 2985305 R 357809 CDS YP_001559533.1 160880565 5742504 complement(2987162..2988574) 1 NC_010001.1 PFAM: pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: cth:Cthe_0701 conserved carboxylase region containing protein; oxaloacetate decarboxylase 2988574 5742504 Cphy_2433 Clostridium phytofermentans ISDg oxaloacetate decarboxylase YP_001559533.1 2987162 R 357809 CDS YP_001559534.1 160880566 5742505 complement(2988701..2989783) 1 NC_010001.1 KEGG: csc:Csac_2482 sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; sodium ion-translocating decarboxylase subunit beta 2989783 5742505 Cphy_2434 Clostridium phytofermentans ISDg sodium ion-translocating decarboxylase subunit beta YP_001559534.1 2988701 R 357809 CDS YP_001559535.1 160880567 5742506 complement(2989885..2990289) 1 NC_010001.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cth:Cthe_0700 biotin/lipoyl attachment protein; biotin/lipoyl attachment domain-containing protein 2990289 5742506 Cphy_2435 Clostridium phytofermentans ISDg biotin/lipoyl attachment domain-containing protein YP_001559535.1 2989885 R 357809 CDS YP_001559536.1 160880568 5742507 complement(2990309..2990644) 1 NC_010001.1 PFAM: sodium pump decarboxylase gamma subunit; sodium pump decarboxylase gamma subunit 2990644 5742507 Cphy_2436 Clostridium phytofermentans ISDg sodium pump decarboxylase gamma subunit YP_001559536.1 2990309 R 357809 CDS YP_001559537.1 160880569 5742508 complement(2990661..2992094) 1 NC_010001.1 PFAM: carboxyl transferase; KEGG: cth:Cthe_0699 carboxyl transferase; propionyl-CoA carboxylase 2992094 5742508 Cphy_2437 Clostridium phytofermentans ISDg propionyl-CoA carboxylase YP_001559537.1 2990661 R 357809 CDS YP_001559538.1 160880570 5742509 complement(2992459..2993100) 1 NC_010001.1 PFAM: regulatory protein RecX; KEGG: cbe:Cbei_2402 regulatory protein RecX; regulatory protein RecX 2993100 5742509 Cphy_2438 Clostridium phytofermentans ISDg regulatory protein RecX YP_001559538.1 2992459 R 357809 CDS YP_001559539.1 160880571 5742510 complement(2993104..2994147) 1 NC_010001.1 KEGG: cth:Cthe_1050 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein 2994147 5742510 Cphy_2439 Clostridium phytofermentans ISDg recA protein YP_001559539.1 2993104 R 357809 CDS YP_001559540.1 160880572 5742511 2994740..2994916 1 NC_010001.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cbe:Cbei_3056 BFD domain protein (2Fe-2S)-binding domain protein; BFD/(2Fe-2S)-binding domain-containing protein 2994916 5742511 Cphy_2440 Clostridium phytofermentans ISDg BFD/(2Fe-2S)-binding domain-containing protein YP_001559540.1 2994740 D 357809 CDS YP_001559541.1 160880573 5742512 complement(2995013..2996233) 1 NC_010001.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 2996233 5742512 Cphy_2441 Clostridium phytofermentans ISDg threonine dehydratase YP_001559541.1 2995013 R 357809 CDS YP_001559542.1 160880574 5742513 complement(2996412..2997344) 1 NC_010001.1 KEGG: cth:Cthe_0926 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 2997344 5742513 Cphy_2442 Clostridium phytofermentans ISDg signal recognition particle-docking protein FtsY YP_001559542.1 2996412 R 357809 CDS YP_001559543.1 160880575 5742514 complement(2997461..3001018) 1 NC_010001.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: cth:Cthe_0927 chromosome segregation protein SMC; chromosome segregation protein SMC 3001018 5742514 Cphy_2443 Clostridium phytofermentans ISDg chromosome segregation protein SMC YP_001559543.1 2997461 R 357809 CDS YP_001559544.1 160880576 5742515 complement(3001116..3001823) 1 NC_010001.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: amt:Amet_2752 ribonuclease III; ribonuclease III 3001823 5742515 Cphy_2444 Clostridium phytofermentans ISDg ribonuclease III YP_001559544.1 3001116 R 357809 CDS YP_001559545.1 160880577 5742516 3002052..3003227 1 NC_010001.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 3003227 5742516 Cphy_2445 Clostridium phytofermentans ISDg transposase IS204/IS1001/IS1096/IS1165 family protein YP_001559545.1 3002052 D 357809 CDS YP_001559546.1 160880578 5742517 complement(3003416..3003646) 1 NC_010001.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 3003646 acpP 5742517 acpP Clostridium phytofermentans ISDg acyl carrier protein YP_001559546.1 3003416 R 357809 CDS YP_001559547.1 160880579 5742518 complement(3003674..3004705) 1 NC_010001.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: cno:NT01CX_2221 fatty acid/phospholipid synthesis protein PlsX; fatty acid/phospholipid synthesis protein PlsX 3004705 5742518 Cphy_2447 Clostridium phytofermentans ISDg fatty acid/phospholipid synthesis protein PlsX YP_001559547.1 3003674 R 357809 CDS YP_001559548.1 160880580 5742519 complement(3005002..3005778) 1 NC_010001.1 PFAM: MCP methyltransferase CheR-type; KEGG: csc:Csac_0981 protein-glutamate O-methyltransferase; chemotaxis protein CheR 3005778 5742519 Cphy_2448 Clostridium phytofermentans ISDg chemotaxis protein CheR YP_001559548.1 3005002 R 357809 CDS YP_001559549.1 160880581 5742520 complement(3005907..3007838) 1 NC_010001.1 TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: RNA binding S1 domain protein; LytB protein; KEGG: cth:Cthe_0714 hydroxymethylbutenyl pyrophosphate reductase; hydroxymethylbutenyl pyrophosphate reductase 3007838 5742520 Cphy_2449 Clostridium phytofermentans ISDg hydroxymethylbutenyl pyrophosphate reductase YP_001559549.1 3005907 R 357809 CDS YP_001559550.1 160880582 5742521 complement(3007980..3008663) 1 NC_010001.1 KEGG: csc:Csac_1889 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase 3008663 5742521 Cphy_2450 Clostridium phytofermentans ISDg cytidylate kinase YP_001559550.1 3007980 R 357809 CDS YP_001559551.1 160880583 5742522 complement(3008676..3010016) 1 NC_010001.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; KEGG: cno:NT01CX_2094 NAD(FAD)-utilizing dehydrogenase; hypothetical protein 3010016 5742522 Cphy_2451 Clostridium phytofermentans ISDg hypothetical protein YP_001559551.1 3008676 R 357809 CDS YP_001559552.1 160880584 5742523 complement(3010239..3010793) 1 NC_010001.1 hypothetical protein 3010793 5742523 Cphy_2452 Clostridium phytofermentans ISDg hypothetical protein YP_001559552.1 3010239 R 357809 CDS YP_001559553.1 160880585 5742524 complement(3010976..3012142) 1 NC_010001.1 PFAM: CinA domain protein; KEGG: tte:TTE1375 predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; CinA domain-containing protein 3012142 5742524 Cphy_2453 Clostridium phytofermentans ISDg CinA domain-containing protein YP_001559553.1 3010976 R 357809 CDS YP_001559554.1 160880586 5742525 complement(3012406..3012948) 1 NC_010001.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cpr:CPR_1646 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3012948 5742525 Cphy_2454 Clostridium phytofermentans ISDg CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001559554.1 3012406 R 357809 CDS YP_001559555.1 160880587 5742526 complement(3012965..3014287) 1 NC_010001.1 KEGG: tte:TTE1377 2-methylthioadenine synthetase; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme YliG 3014287 5742526 Cphy_2455 Clostridium phytofermentans ISDg MiaB-like tRNA modifying enzyme YliG YP_001559555.1 3012965 R 357809 CDS YP_001559556.1 160880588 5742527 complement(3014642..3015490) 1 NC_010001.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: cth:Cthe_1093 methenyltetrahydrofolate cyclohydrolase; methylenetetrahydrofolate dehydrogenase 3015490 5742527 Cphy_2456 Clostridium phytofermentans ISDg methylenetetrahydrofolate dehydrogenase YP_001559556.1 3014642 R 357809 CDS YP_001559557.1 160880589 5742528 complement(3015596..3017149) 1 NC_010001.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: cpr:CPR_0345 cardiolipin synthetase; phospholipase D/transphosphatidylase 3017149 5742528 Cphy_2457 Clostridium phytofermentans ISDg phospholipase D/transphosphatidylase YP_001559557.1 3015596 R 357809 CDS YP_001559558.1 160880590 5742529 complement(3017438..3019729) 1 NC_010001.1 PFAM: aconitate hydratase domain protein; KEGG: dsy:DSY4204 aconitase A; hypothetical protein 3019729 5742529 Cphy_2458 Clostridium phytofermentans ISDg hypothetical protein YP_001559558.1 3017438 R 357809 CDS YP_001559559.1 160880591 5742530 complement(3019854..3020405) 1 NC_010001.1 hypothetical protein 3020405 5742530 Cphy_2459 Clostridium phytofermentans ISDg hypothetical protein YP_001559559.1 3019854 R 357809 CDS YP_001559560.1 160880592 5742531 complement(3020510..3021967) 1 NC_010001.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_0545 MATE efflux family protein; multi anti extrusion protein MatE 3021967 5742531 Cphy_2460 Clostridium phytofermentans ISDg multi anti extrusion protein MatE YP_001559560.1 3020510 R 357809 CDS YP_001559561.1 160880593 5742532 3022317..3023150 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: amt:Amet_0544 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 3023150 5742532 Cphy_2461 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001559561.1 3022317 D 357809 CDS YP_001559562.1 160880594 5742533 complement(3023301..3023648) 1 NC_010001.1 KEGG: amt:Amet_4322 hypothetical protein; hypothetical protein 3023648 5742533 Cphy_2462 Clostridium phytofermentans ISDg hypothetical protein YP_001559562.1 3023301 R 357809 CDS YP_001559563.1 160880595 5742534 complement(3023803..3024975) 1 NC_010001.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cbf:CLI_1505 NADH-dependent butanol dehydrogenase; iron-containing alcohol dehydrogenase 3024975 5742534 Cphy_2463 Clostridium phytofermentans ISDg iron-containing alcohol dehydrogenase YP_001559563.1 3023803 R 357809 CDS YP_001559564.1 160880596 5742535 complement(3025234..3026121) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_1165 hypothetical protein; binding-protein-dependent transport system inner membrane protein 3026121 5742535 Cphy_2464 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001559564.1 3025234 R 357809 CDS YP_001559565.1 160880597 5742536 complement(3026126..3027100) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_1164 hypothetical protein; binding-protein-dependent transport system inner membrane protein 3027100 5742536 Cphy_2465 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001559565.1 3026126 R 357809 CDS YP_001559566.1 160880598 5742537 complement(3027334..3028755) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: llc:LACR_1435 ABC-type sugar transport system, periplasmic component; extracellular solute-binding protein 3028755 5742537 Cphy_2466 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001559566.1 3027334 R 357809 CDS YP_001559567.1 160880599 5742538 complement(3028826..3029881) 1 NC_010001.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bha:BH1928 transcriptional regulator (LacI family); LacI family transcriptional regulator 3029881 5742538 Cphy_2467 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001559567.1 3028826 R 357809 CDS YP_001559568.1 160880600 5742539 complement(3030540..3031322) 1 NC_010001.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin; sporulation sigma factor SigG 3031322 5742539 Cphy_2468 Clostridium phytofermentans ISDg sporulation sigma factor SigG YP_001559568.1 3030540 R 357809 CDS YP_001559569.1 160880601 5742540 complement(3031435..3032175) 1 NC_010001.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; sporulation sigma factor SigE 3032175 5742540 Cphy_2469 Clostridium phytofermentans ISDg sporulation sigma factor SigE YP_001559569.1 3031435 R 357809 CDS YP_001559570.1 160880602 5742541 complement(3032193..3033074) 1 NC_010001.1 PFAM: peptidase U4 sporulation factor SpoIIGA; KEGG: bpu:BPUM_1425 stage II sporulation U4 family membrane protease; peptidase U4 sporulation factor SpoIIGA 3033074 5742541 Cphy_2470 Clostridium phytofermentans ISDg peptidase U4 sporulation factor SpoIIGA YP_001559570.1 3032193 R 357809 CDS YP_001559571.1 160880603 5742542 complement(3033316..3034548) 1 NC_010001.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: cth:Cthe_0445 cell division protein FtsZ; cell division protein FtsZ 3034548 5742542 Cphy_2471 Clostridium phytofermentans ISDg cell division protein FtsZ YP_001559571.1 3033316 R 357809 CDS YP_001559572.1 160880604 5742543 complement(3034850..3035599) 1 NC_010001.1 KEGG: cbh:CLC_1498 cell division protein FtsQ; hypothetical protein 3035599 5742543 Cphy_2472 Clostridium phytofermentans ISDg hypothetical protein YP_001559572.1 3034850 R 357809 CDS YP_001559573.1 160880605 5742544 complement(3035832..3037088) 1 NC_010001.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: tte:TTE1644 UDP-N-acetylglucosamine enolpyruvyl transferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3037088 5742544 Cphy_2473 Clostridium phytofermentans ISDg UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001559573.1 3035832 R 357809 CDS YP_001559574.1 160880606 5742545 complement(3037180..3038310) 1 NC_010001.1 PFAM: cell cycle protein; KEGG: csc:Csac_0924 cell division protein FtsW; cell cycle protein 3038310 5742545 Cphy_2474 Clostridium phytofermentans ISDg cell cycle protein YP_001559574.1 3037180 R 357809 CDS YP_001559575.1 160880607 5742546 complement(3038345..3039709) 1 NC_010001.1 TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: amt:Amet_2881 UDP-N-acetylmuramoylalanine--D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 3039709 5742546 Cphy_2475 Clostridium phytofermentans ISDg UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_001559575.1 3038345 R 357809 CDS YP_001559576.1 160880608 5742547 complement(3039871..3041820) 1 NC_010001.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: csc:Csac_0919 stage V sporulation protein D; peptidoglycan glycosyltransferase 3041820 5742547 Cphy_2476 Clostridium phytofermentans ISDg peptidoglycan glycosyltransferase YP_001559576.1 3039871 R 357809 CDS YP_001559577.1 160880609 5742548 complement(3041924..3043879) 1 NC_010001.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: tte:TTE1651 Cell division protein FtsI/penicillin-binding protein 2; peptidoglycan glycosyltransferase 3043879 5742548 Cphy_2477 Clostridium phytofermentans ISDg peptidoglycan glycosyltransferase YP_001559577.1 3041924 R 357809 CDS YP_001559578.1 160880610 5742549 complement(3044190..3044738) 1 NC_010001.1 PFAM: Septum formation initiator; septum formation initiator 3044738 5742549 Cphy_2478 Clostridium phytofermentans ISDg septum formation initiator YP_001559578.1 3044190 R 357809 CDS YP_001559579.1 160880611 5742550 complement(3044855..3045808) 1 NC_010001.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: cac:CAC2132 S-adenosyl-methyltransferase; S-adenosyl-methyltransferase MraW 3045808 mraW 5742550 mraW Clostridium phytofermentans ISDg S-adenosyl-methyltransferase MraW YP_001559579.1 3044855 R 357809 CDS YP_001559580.1 160880612 5742551 complement(3045859..3046284) 1 NC_010001.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: tte:TTE1654 MraZ protein; MraZ protein 3046284 5742551 Cphy_2480 Clostridium phytofermentans ISDg MraZ protein YP_001559580.1 3045859 R 357809 CDS YP_001559581.1 160880613 5742552 complement(3046629..3047546) 1 NC_010001.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: csc:Csac_0915 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 3047546 5742552 Cphy_2481 Clostridium phytofermentans ISDg prolipoprotein diacylglyceryl transferase YP_001559581.1 3046629 R 357809 CDS YP_001559582.1 160880614 5742553 complement(3047565..3048662) 1 NC_010001.1 TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein HSR1-related; Protein of unknown function DUF933; KEGG: csc:Csac_1719 GTP-binding protein YchF; GTP-binding protein YchF 3048662 5742553 Cphy_2482 Clostridium phytofermentans ISDg GTP-binding protein YchF YP_001559582.1 3047565 R 357809 CDS YP_001559583.1 160880615 5742554 complement(3048771..3049421) 1 NC_010001.1 TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; Thiamin pyrophosphokinase vitamin B1-binding region; KEGG: ctc:CTC01228 thiamin pyrophosphokinase; thiamine pyrophosphokinase 3049421 5742554 Cphy_2483 Clostridium phytofermentans ISDg thiamine pyrophosphokinase YP_001559583.1 3048771 R 357809 CDS YP_001559584.1 160880616 5742555 complement(3049599..3050261) 1 NC_010001.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: cbe:Cbei_1153 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 3050261 5742555 Cphy_2484 Clostridium phytofermentans ISDg ribulose-phosphate 3-epimerase YP_001559584.1 3049599 R 357809 CDS YP_001559585.1 160880617 5742556 complement(3050579..3051454) 1 NC_010001.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: amt:Amet_2778 ribosome small subunit-dependent GTPase A; ribosome small subunit-dependent GTPase A 3051454 5742556 Cphy_2485 Clostridium phytofermentans ISDg ribosome small subunit-dependent GTPase A YP_001559585.1 3050579 R 357809 CDS YP_001559586.1 160880618 5742557 complement(3051547..3053694) 1 NC_010001.1 PFAM: protein of unknown function RIO1; protein kinase; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; KEGG: csc:Csac_2076 protein kinase; serine/threonine protein kinase with PASTA sensor(s) 3053694 5742557 Cphy_2486 Clostridium phytofermentans ISDg serine/threonine protein kinase with PASTA sensor(s) YP_001559586.1 3051547 R 357809 CDS YP_001559587.1 160880619 5742558 complement(3053814..3054539) 1 NC_010001.1 PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: cth:Cthe_0573 protein serine/threonine phosphatases; Ser/Thr phosphatase 3054539 5742558 Cphy_2487 Clostridium phytofermentans ISDg Ser/Thr phosphatase YP_001559587.1 3053814 R 357809 CDS YP_001559588.1 160880620 5742559 complement(3054541..3055611) 1 NC_010001.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: cpr:CPR_1711 radical SAM enzyme, Cfr family; radical SAM protein 3055611 5742559 Cphy_2488 Clostridium phytofermentans ISDg radical SAM protein YP_001559588.1 3054541 R 357809 CDS YP_001559589.1 160880621 5742560 complement(3055741..3057102) 1 NC_010001.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: cth:Cthe_0571 sun protein; sun protein 3057102 5742560 Cphy_2489 Clostridium phytofermentans ISDg sun protein YP_001559589.1 3055741 R 357809 CDS YP_001559590.1 160880622 5742561 complement(3057124..3057849) 1 NC_010001.1 PFAM: peptidase membrane zinc metallopeptidase KEGG: efa:EF2210 hypothetical protein; peptidase membrane zinc metallopeptidase 3057849 5742561 Cphy_2490 Clostridium phytofermentans ISDg peptidase membrane zinc metallopeptidase YP_001559590.1 3057124 R 357809 CDS YP_001559591.1 160880623 5742562 complement(3058190..3059149) 1 NC_010001.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: cdf:CD2584 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 3059149 5742562 Cphy_2491 Clostridium phytofermentans ISDg methionyl-tRNA formyltransferase YP_001559591.1 3058190 R 357809 CDS YP_001559592.1 160880624 5742563 complement(3059161..3059652) 1 NC_010001.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3059652 def 5742563 def Clostridium phytofermentans ISDg peptide deformylase YP_001559592.1 3059161 R 357809 CDS YP_001559593.1 160880625 5742564 complement(3059669..3062047) 1 NC_010001.1 KEGG: tte:TTE1508 Primosomal protein N (replication factor Y) - superfamily II helicase; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; primosomal protein N' 3062047 5742564 Cphy_2493 Clostridium phytofermentans ISDg primosomal protein N' YP_001559593.1 3059669 R 357809 CDS YP_001559594.1 160880626 5742565 complement(3062079..3063602) 1 NC_010001.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dsy:DSY3693 hypothetical protein; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 3063602 5742565 Cphy_2494 Clostridium phytofermentans ISDg UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_001559594.1 3062079 R 357809 CDS YP_001559595.1 160880627 5742566 complement(3063638..3065119) 1 NC_010001.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cth:Cthe_0978 UDP-N-acetylmuramyl-tripeptide synthetases; UDP-N-acetylmuramyl tripeptide synthetase 3065119 5742566 Cphy_2495 Clostridium phytofermentans ISDg UDP-N-acetylmuramyl tripeptide synthetase YP_001559595.1 3063638 R 357809 CDS YP_001559596.1 160880628 5742567 complement(3065489..3066925) 1 NC_010001.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: drm:Dred_1457 glycogen/starch synthases, ADP-glucose type; glycogen/starch synthase 3066925 5742567 Cphy_2496 Clostridium phytofermentans ISDg glycogen/starch synthase YP_001559596.1 3065489 R 357809 CDS YP_001559597.1 160880629 5742568 complement(3067044..3067844) 1 NC_010001.1 TIGRFAM: sporulation transcription factor Spo0A; PFAM: response regulator receiver; Sporulation initiation factor Spo0A; KEGG: cth:Cthe_0812 response regulator receiver protein; sporulation transcriptional activator Spo0A 3067844 5742568 Cphy_2497 Clostridium phytofermentans ISDg sporulation transcriptional activator Spo0A YP_001559597.1 3067044 R 357809 CDS YP_001559598.1 160880630 5742569 complement(3068402..3069739) 1 NC_010001.1 KEGG: amt:Amet_2512 peptidase S55, sporulation stage IV, protein B; TIGRFAM: stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB; SMART: PDZ/DHR/GLGF domain protein; stage IV sporulation protein B 3069739 5742569 Cphy_2498 Clostridium phytofermentans ISDg stage IV sporulation protein B YP_001559598.1 3068402 R 357809 CDS YP_001559599.1 160880631 5742570 complement(3069975..3071660) 1 NC_010001.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: cth:Cthe_0814 DNA repair protein RecN; DNA repair protein RecN 3071660 5742570 Cphy_2499 Clostridium phytofermentans ISDg DNA repair protein RecN YP_001559599.1 3069975 R 357809 CDS YP_001559600.1 160880632 5742571 complement(3071949..3075851) 1 NC_010001.1 PFAM: Ig domain protein group 2 domain protein; KEGG: cth:Cthe_0056 Ig-like, group 2; Ig domain-containing protein 3075851 5742571 Cphy_2500 Clostridium phytofermentans ISDg Ig domain-containing protein YP_001559600.1 3071949 R 357809 CDS YP_001559601.1 160880633 5742572 3076377..3076847 1 NC_010001.1 hypothetical protein 3076847 5742572 Cphy_2501 Clostridium phytofermentans ISDg hypothetical protein YP_001559601.1 3076377 D 357809 CDS YP_001559602.1 160880634 5742573 3076928..3077176 1 NC_010001.1 KEGG: cdf:CD0476 hypothetical protein; hypothetical protein 3077176 5742573 Cphy_2502 Clostridium phytofermentans ISDg hypothetical protein YP_001559602.1 3076928 D 357809 CDS YP_001559603.1 160880635 5742574 3077391..3077969 1 NC_010001.1 PFAM: Chloramphenicol phosphotransferase family protein; KEGG: sma:SAV787 hypothetical protein; chloramphenicol phosphotransferase family protein 3077969 5742574 Cphy_2503 Clostridium phytofermentans ISDg chloramphenicol phosphotransferase family protein YP_001559603.1 3077391 D 357809 CDS YP_001559604.1 160880636 5742575 complement(3078108..3078674) 1 NC_010001.1 hypothetical protein 3078674 5742575 Cphy_2504 Clostridium phytofermentans ISDg hypothetical protein YP_001559604.1 3078108 R 357809 CDS YP_001559605.1 160880637 5742576 complement(3078788..3078985) 1 NC_010001.1 KEGG: ckl:CKL_0484 hypothetical protein; hypothetical protein 3078985 5742576 Cphy_2505 Clostridium phytofermentans ISDg hypothetical protein YP_001559605.1 3078788 R 357809 CDS YP_001559606.1 160880638 5742577 complement(3079473..3080222) 1 NC_010001.1 KEGG: btl:BALH_1130 hypothetical protein; hypothetical protein 3080222 5742577 Cphy_2506 Clostridium phytofermentans ISDg hypothetical protein YP_001559606.1 3079473 R 357809 CDS YP_001559607.1 160880639 5742578 complement(3080711..3081439) 1 NC_010001.1 PFAM: protein of unknown function DUF28; KEGG: cth:Cthe_2075 protein of unknown function DUF28; hypothetical protein 3081439 5742578 Cphy_2507 Clostridium phytofermentans ISDg hypothetical protein YP_001559607.1 3080711 R 357809 CDS YP_001559608.1 160880640 5742579 complement(3081623..3082081) 1 NC_010001.1 PFAM: arginine repressor; KEGG: csc:Csac_1897 arginine repressor, ArgR; arginine repressor ArgR 3082081 5742579 Cphy_2508 Clostridium phytofermentans ISDg arginine repressor ArgR YP_001559608.1 3081623 R 357809 CDS YP_001559609.1 160880641 5742580 complement(3082103..3082960) 1 NC_010001.1 PFAM: ATP-NAD/AcoX kinase; KEGG: cth:Cthe_0816 NAD(+) kinase; ATP-NAD/AcoX kinase 3082960 5742580 Cphy_2509 Clostridium phytofermentans ISDg ATP-NAD/AcoX kinase YP_001559609.1 3082103 R 357809 CDS YP_001559610.1 160880642 5742581 complement(3083087..3083887) 1 NC_010001.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: cdf:CD1208 RNA methyltransferase; hemolysin A 3083887 5742581 Cphy_2510 Clostridium phytofermentans ISDg hemolysin A YP_001559610.1 3083087 R 357809 CDS YP_001559611.1 160880643 5742582 complement(3083993..3085870) 1 NC_010001.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: amt:Amet_2508 deoxyxylulose-5-phosphate synthase; deoxyxylulose-5-phosphate synthase 3085870 5742582 Cphy_2511 Clostridium phytofermentans ISDg deoxyxylulose-5-phosphate synthase YP_001559611.1 3083993 R 357809 CDS YP_001559612.1 160880644 5742583 complement(3085890..3086897) 1 NC_010001.1 PFAM: Polyprenyl synthetase; KEGG: cdf:CD1205 geranyltranstransferase; polyprenyl synthetase 3086897 5742583 Cphy_2512 Clostridium phytofermentans ISDg polyprenyl synthetase YP_001559612.1 3085890 R 357809 CDS YP_001559613.1 160880645 5742584 complement(3086922..3087137) 1 NC_010001.1 PFAM: Exonuclease VII small subunit; KEGG: efa:EF0980 exodeoxyribonuclease VII, small subunit; exonuclease VII small subunit 3087137 5742584 Cphy_2513 Clostridium phytofermentans ISDg exonuclease VII small subunit YP_001559613.1 3086922 R 357809 CDS YP_001559614.1 160880646 5742585 complement(3087152..3088357) 1 NC_010001.1 KEGG: gka:GK2395 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 3088357 5742585 Cphy_2514 Clostridium phytofermentans ISDg exodeoxyribonuclease VII large subunit YP_001559614.1 3087152 R 357809 CDS YP_001559615.1 160880647 5742586 complement(3088425..3088823) 1 NC_010001.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: amt:Amet_2501 NusB antitermination factor; NusB antitermination factor 3088823 5742586 Cphy_2515 Clostridium phytofermentans ISDg NusB antitermination factor YP_001559615.1 3088425 R 357809 CDS YP_001559616.1 160880648 5742587 complement(3088975..3089367) 1 NC_010001.1 PFAM: protein of unknown function DUF322; KEGG: amt:Amet_2500 protein of unknown function DUF322; hypothetical protein 3089367 5742587 Cphy_2516 Clostridium phytofermentans ISDg hypothetical protein YP_001559616.1 3088975 R 357809 CDS YP_001559617.1 160880649 5742588 complement(3089660..3090421) 1 NC_010001.1 KEGG: cth:Cthe_0838 hypothetical protein; hypothetical protein 3090421 5742588 Cphy_2517 Clostridium phytofermentans ISDg hypothetical protein YP_001559617.1 3089660 R 357809 CDS YP_001559618.1 160880650 5742589 complement(3090485..3091204) 1 NC_010001.1 KEGG: cth:Cthe_0839 stage III sporulation protein AG; hypothetical protein 3091204 5742589 Cphy_2518 Clostridium phytofermentans ISDg hypothetical protein YP_001559618.1 3090485 R 357809 CDS YP_001559619.1 160880651 5742590 complement(3091188..3091859) 1 NC_010001.1 KEGG: cth:Cthe_0840 hypothetical protein; hypothetical protein 3091859 5742590 Cphy_2519 Clostridium phytofermentans ISDg hypothetical protein YP_001559619.1 3091188 R 357809 CDS YP_001559620.1 160880652 5742591 complement(3091880..3093022) 1 NC_010001.1 KEGG: amt:Amet_2496 sporulation stage III, protein AE; sporulation stage III, protein AE 3093022 5742591 Cphy_2520 Clostridium phytofermentans ISDg sporulation stage III, protein AE YP_001559620.1 3091880 R 357809 CDS YP_001559621.1 160880653 5742592 complement(3093041..3093460) 1 NC_010001.1 TIGRFAM: stage III sporulation protein AD; PFAM: Sporulation stage III protein AD; KEGG: amt:Amet_2495 sporulation stage III, protein AD; stage III sporulation protein AD 3093460 5742592 Cphy_2521 Clostridium phytofermentans ISDg stage III sporulation protein AD YP_001559621.1 3093041 R 357809 CDS YP_001559622.1 160880654 5742593 complement(3093549..3093701) 1 NC_010001.1 KEGG: cdf:CD1194 stage III sporulation protein AC; stage III sporulation protein AC 3093701 5742593 Cphy_2522 Clostridium phytofermentans ISDg stage III sporulation protein AC YP_001559622.1 3093549 R 357809 CDS YP_001559623.1 160880655 5742594 complement(3093757..3094287) 1 NC_010001.1 KEGG: cth:Cthe_0844 stage III sporulation protein spoIIIAB; hypothetical protein 3094287 5742594 Cphy_2523 Clostridium phytofermentans ISDg hypothetical protein YP_001559623.1 3093757 R 357809 CDS YP_001559624.1 160880656 5742595 complement(3094308..3095276) 1 NC_010001.1 TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase; KEGG: pth:PTH_1166 hypothetical protein; stage III sporulation protein AA 3095276 5742595 Cphy_2524 Clostridium phytofermentans ISDg stage III sporulation protein AA YP_001559624.1 3094308 R 357809 CDS YP_001559625.1 160880657 5742596 3095595..3096365 1 NC_010001.1 PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: cno:NT01CX_0621 shikimate 5-dehydrogenase; shikimate dehydrogenase 3096365 5742596 Cphy_2525 Clostridium phytofermentans ISDg shikimate dehydrogenase YP_001559625.1 3095595 D 357809 CDS YP_001559626.1 160880658 5742597 3096736..3097287 1 NC_010001.1 PFAM: transcriptional regulator PadR family protein; KEGG: cdf:CD3209 PadR-family transcriptional regulator; PadR-like family transcriptional regulator 3097287 5742597 Cphy_2526 Clostridium phytofermentans ISDg PadR-like family transcriptional regulator YP_001559626.1 3096736 D 357809 CDS YP_001559627.1 160880659 5742598 3097284..3097676 1 NC_010001.1 hypothetical protein 3097676 5742598 Cphy_2527 Clostridium phytofermentans ISDg hypothetical protein YP_001559627.1 3097284 D 357809 CDS YP_001559628.1 160880660 5742599 3097694..3098092 1 NC_010001.1 hypothetical protein 3098092 5742599 Cphy_2528 Clostridium phytofermentans ISDg hypothetical protein YP_001559628.1 3097694 D 357809 CDS YP_001559629.1 160880661 5742600 complement(3098151..3098708) 1 NC_010001.1 TIGRFAM: translation elongation factor P; PFAM: Elongation factor P/YeiP protein; Elongation factor KOW domain protein; Elongation factor P; KEGG: cth:Cthe_0847 translation elongation factor P; translation elongation factor P 3098708 5742600 Cphy_2529 Clostridium phytofermentans ISDg translation elongation factor P YP_001559629.1 3098151 R 357809 CDS YP_001559630.1 160880662 5742601 complement(3098932..3099993) 1 NC_010001.1 PFAM: creatinase; peptidase M24; KEGG: tte:TTE1280 Xaa-Pro aminopeptidase; peptidase M24 3099993 5742601 Cphy_2530 Clostridium phytofermentans ISDg peptidase M24 YP_001559630.1 3098932 R 357809 CDS YP_001559631.1 160880663 5742602 complement(3100150..3100587) 1 NC_010001.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 3100587 5742602 Cphy_2531 Clostridium phytofermentans ISDg 3-dehydroquinate dehydratase YP_001559631.1 3100150 R 357809 CDS YP_001559632.1 160880664 5742603 complement(3100611..3101132) 1 NC_010001.1 PFAM: shikimate kinase; KEGG: amt:Amet_0651 chorismate mutase; shikimate kinase 3101132 5742603 Cphy_2532 Clostridium phytofermentans ISDg shikimate kinase YP_001559632.1 3100611 R 357809 CDS YP_001559633.1 160880665 5742604 complement(3101143..3101658) 1 NC_010001.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; PFAM: HAD-superfamily phosphatase subfamily IIIA; KEGG: cth:Cthe_0855 HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; HAD family phosphatase 3101658 5742604 Cphy_2533 Clostridium phytofermentans ISDg HAD family phosphatase YP_001559633.1 3101143 R 357809 CDS YP_001559634.1 160880666 5742605 3102399..3103187 1 NC_010001.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 3103187 5742605 Cphy_2534 Clostridium phytofermentans ISDg gluconate 5-dehydrogenase YP_001559634.1 3102399 D 357809 CDS YP_001559635.1 160880667 5742606 complement(3103356..3104270) 1 NC_010001.1 PFAM: Aldose 1-epimerase; KEGG: tva:TVAG_202440 Aldose 1-epimerase family protein Pfam: Aldose_epim; aldose 1-epimerase 3104270 5742606 Cphy_2535 Clostridium phytofermentans ISDg aldose 1-epimerase YP_001559635.1 3103356 R 357809 CDS YP_001559636.1 160880668 5742607 complement(3104290..3105003) 1 NC_010001.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: tte:TTE2700 predicted glutamine amidotransferases; peptidase C26 3105003 5742607 Cphy_2536 Clostridium phytofermentans ISDg peptidase C26 YP_001559636.1 3104290 R 357809 CDS YP_001559637.1 160880669 5742608 complement(3105417..3107510) 1 NC_010001.1 TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; Miro domain protein; KEGG: cth:Cthe_1794 translation elongation factor G; small GTP-binding protein 3107510 5742608 Cphy_2537 Clostridium phytofermentans ISDg small GTP-binding protein YP_001559637.1 3105417 R 357809 CDS YP_001559638.1 160880670 5742609 3107946..3108959 1 NC_010001.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: cth:Cthe_1795 phospho-2-dehydro-3-deoxyheptonate aldolase; phospho-2-dehydro-3-deoxyheptonate aldolase 3108959 5742609 Cphy_2538 Clostridium phytofermentans ISDg phospho-2-dehydro-3-deoxyheptonate aldolase YP_001559638.1 3107946 D 357809 CDS YP_001559639.1 160880671 5742610 3108976..3110085 1 NC_010001.1 PFAM: amino acid-binding ACT domain protein; Prephenate dehydrogenase; KEGG: cth:Cthe_1796 prephenate dehydrogenase; prephenate dehydrogenase 3110085 5742610 Cphy_2539 Clostridium phytofermentans ISDg prephenate dehydrogenase YP_001559639.1 3108976 D 357809 CDS YP_001559640.1 160880672 5741818 3110347..3111657 1 NC_010001.1 TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: bcy:Bcer98_1242 3-phosphoshikimate 1-carboxyvinyltransferase; 3-phosphoshikimate 1-carboxyvinyltransferase 3111657 5741818 Cphy_2540 Clostridium phytofermentans ISDg 3-phosphoshikimate 1-carboxyvinyltransferase YP_001559640.1 3110347 D 357809 CDS YP_001559641.1 160880673 5741819 complement(3111870..3112358) 1 NC_010001.1 hypothetical protein 3112358 5741819 Cphy_2541 Clostridium phytofermentans ISDg hypothetical protein YP_001559641.1 3111870 R 357809 CDS YP_001559642.1 160880674 5741820 complement(3112655..3113005) 1 NC_010001.1 PFAM: Peptidoglycan-binding LysM; peptidoglycan-binding LysM 3113005 5741820 Cphy_2542 Clostridium phytofermentans ISDg peptidoglycan-binding LysM YP_001559642.1 3112655 R 357809 CDS YP_001559643.1 160880675 5741821 3113407..3114021 1 NC_010001.1 KEGG: csc:Csac_2042 SOS-response transcriptional repressor, LexA; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein; LexA family transcriptional regulator 3114021 5741821 Cphy_2543 Clostridium phytofermentans ISDg LexA family transcriptional regulator YP_001559643.1 3113407 D 357809 CDS YP_001559644.1 160880676 5741822 complement(3114256..3114618) 1 NC_010001.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: pth:PTH_0837 uncharacterized homolog of plant iojap protein; iojap family protein 3114618 5741822 Cphy_2544 Clostridium phytofermentans ISDg iojap family protein YP_001559644.1 3114256 R 357809 CDS YP_001559645.1 160880677 5741823 complement(3114689..3115279) 1 NC_010001.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cno:NT01CX_0074 conserved hypothetical protein TIGR00488; metal dependent phosphohydrolase 3115279 5741823 Cphy_2545 Clostridium phytofermentans ISDg metal dependent phosphohydrolase YP_001559645.1 3114689 R 357809 CDS YP_001559646.1 160880678 5741824 complement(3115305..3115907) 1 NC_010001.1 KEGG: pth:PTH_0835 nicotinic acid mononucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 3115907 5741824 Cphy_2546 Clostridium phytofermentans ISDg nicotinate (nicotinamide) nucleotide adenylyltransferase YP_001559646.1 3115305 R 357809 CDS YP_001559647.1 160880679 5741825 complement(3115924..3116214) 1 NC_010001.1 PFAM: protein of unknown function UPF0044; KEGG: sar:SAR1672 RNA-binding protein containing KH domain; hypothetical protein 3116214 5741825 Cphy_2547 Clostridium phytofermentans ISDg hypothetical protein YP_001559647.1 3115924 R 357809 CDS YP_001559648.1 160880680 5741826 complement(3116259..3117548) 1 NC_010001.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; GTP1/OBG domain protein; KEGG: cth:Cthe_0163 GTP1/OBG subdomain containing protein; GTP-binding protein Obg/CgtA 3117548 5741826 Cphy_2548 Clostridium phytofermentans ISDg GTP-binding protein Obg/CgtA YP_001559648.1 3116259 R 357809 CDS YP_001559649.1 160880681 5741827 complement(3117932..3118219) 1 NC_010001.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 3118219 rpmA 5741827 rpmA Clostridium phytofermentans ISDg 50S ribosomal protein L27 YP_001559649.1 3117932 R 357809 CDS YP_001559650.1 160880682 5741828 complement(3118265..3118594) 1 NC_010001.1 PFAM: protein of unknown function DUF464; KEGG: lsl:LSL_0955 ribosomal protein; hypothetical protein 3118594 5741828 Cphy_2550 Clostridium phytofermentans ISDg hypothetical protein YP_001559650.1 3118265 R 357809 CDS YP_001559651.1 160880683 5741829 complement(3118614..3118922) 1 NC_010001.1 PFAM: ribosomal protein L21; KEGG: swo:Swol_1613 ribosomal protein L21; 50S ribosomal protein L21 3118922 rplU 5741829 rplU Clostridium phytofermentans ISDg 50S ribosomal protein L21 YP_001559651.1 3118614 R 357809 CDS YP_001559652.1 160880684 5741830 3119382..3120035 1 NC_010001.1 PFAM: protein of unknown function DUF45; KEGG: bcz:BCZK0309 conserved hypothetical protein; possible zinc metalloprotease; hypothetical protein 3120035 5741830 Cphy_2552 Clostridium phytofermentans ISDg hypothetical protein YP_001559652.1 3119382 D 357809 CDS YP_001559653.1 160880685 5741831 complement(3120070..3121041) 1 NC_010001.1 KEGG: mac:MA2899 hypothetical protein; hypothetical protein 3121041 5741831 Cphy_2553 Clostridium phytofermentans ISDg hypothetical protein YP_001559653.1 3120070 R 357809 CDS YP_001559654.1 160880686 5741832 complement(3121808..3122647) 1 NC_010001.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: csc:Csac_1297 DegV family protein; degV family protein 3122647 5741832 Cphy_2554 Clostridium phytofermentans ISDg degV family protein YP_001559654.1 3121808 R 357809 CDS YP_001559655.1 160880687 5741833 complement(3122862..3123311) 1 NC_010001.1 PFAM: regulatory protein MarR; KEGG: efa:EF2886 transcriptional regulator, MarR family; MarR family transcriptional regulator 3123311 5741833 Cphy_2555 Clostridium phytofermentans ISDg MarR family transcriptional regulator YP_001559655.1 3122862 R 357809 CDS YP_001559656.1 160880688 5741834 3123682..3124554 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: cdf:CD1883 AraC-family transcriptional regulator; AraC family transcriptional regulator 3124554 5741834 Cphy_2556 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001559656.1 3123682 D 357809 CDS YP_001559657.1 160880689 5741835 complement(3124680..3125471) 1 NC_010001.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cpe:CPE0284 probable transcriptional regulator; cell envelope-related transcriptional attenuator 3125471 5741835 Cphy_2557 Clostridium phytofermentans ISDg cell envelope-related transcriptional attenuator YP_001559657.1 3124680 R 357809 CDS YP_001559658.1 160880690 5741836 complement(3125499..3125909) 1 NC_010001.1 hypothetical protein 3125909 5741836 Cphy_2558 Clostridium phytofermentans ISDg hypothetical protein YP_001559658.1 3125499 R 357809 CDS YP_001559659.1 160880691 5741837 complement(3126185..3126736) 1 NC_010001.1 KEGG: cth:Cthe_1553 hypothetical protein; hypothetical protein 3126736 5741837 Cphy_2559 Clostridium phytofermentans ISDg hypothetical protein YP_001559659.1 3126185 R 357809 CDS YP_001559660.1 160880692 5741838 complement(3126729..3127163) 1 NC_010001.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cac:CAC3491 protein, related to general stress protein 26(GS26) of B.subtilis (pyridoxinephosphate oxidase family); pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 3127163 5741838 Cphy_2560 Clostridium phytofermentans ISDg pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001559660.1 3126729 R 357809 CDS YP_001559661.1 160880693 5741839 complement(3127160..3127612) 1 NC_010001.1 PFAM: regulatory protein MarR; KEGG: tde:TDE1719 transcriptional regulator, MarR family; MarR family transcriptional regulator 3127612 5741839 Cphy_2561 Clostridium phytofermentans ISDg MarR family transcriptional regulator YP_001559661.1 3127160 R 357809 CDS YP_001559662.1 160880694 5741840 complement(3128084..3128557) 1 NC_010001.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bvu:BVU_3047 transcriptional regulator; ybaK/ebsC protein 3128557 5741840 Cphy_2562 Clostridium phytofermentans ISDg ybaK/ebsC protein YP_001559662.1 3128084 R 357809 CDS YP_001559663.1 160880695 5741841 complement(3128635..3129849) 1 NC_010001.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: drm:Dred_2536 ribonuclease, Rne/Rng family; ribonuclease 3129849 5741841 Cphy_2563 Clostridium phytofermentans ISDg ribonuclease YP_001559663.1 3128635 R 357809 CDS YP_001559664.1 160880696 5741842 complement(3129934..3130806) 1 NC_010001.1 KEGG: cth:Cthe_0157 hypothetical protein; hypothetical protein 3130806 5741842 Cphy_2564 Clostridium phytofermentans ISDg hypothetical protein YP_001559664.1 3129934 R 357809 CDS YP_001559665.1 160880697 5741843 complement(3130923..3132809) 1 NC_010001.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_0156 radical SAM; radical SAM domain-containing protein 3132809 5741843 Cphy_2565 Clostridium phytofermentans ISDg radical SAM domain-containing protein YP_001559665.1 3130923 R 357809 CDS YP_001559666.1 160880698 5741844 complement(3133025..3133432) 1 NC_010001.1 hypothetical protein 3133432 5741844 Cphy_2566 Clostridium phytofermentans ISDg hypothetical protein YP_001559666.1 3133025 R 357809 CDS YP_001559667.1 160880699 5741845 complement(3133582..3135006) 1 NC_010001.1 PFAM: glycoside hydrolase family 28; KEGG: bvu:BVU_1985 glycoside hydrolase family 28; glycoside hydrolase family protein 3135006 5741845 Cphy_2567 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001559667.1 3133582 R 357809 CDS YP_001559668.1 160880700 5741846 complement(3135310..3135972) 1 NC_010001.1 KEGG: tte:TTE0796 uncharacterized Fe-S protein; Fe-S protein-like protein 3135972 5741846 Cphy_2568 Clostridium phytofermentans ISDg Fe-S protein-like protein YP_001559668.1 3135310 R 357809 CDS YP_001559669.1 160880701 5741847 complement(3136132..3137703) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: cpe:CPE1030 multiple sugar/glycerol-3P transport system substrate-binding protein; extracellular solute-binding protein 3137703 5741847 Cphy_2569 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001559669.1 3136132 R 357809 CDS YP_001559670.1 160880702 5741848 complement(3137758..3138693) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0795 multiple sugar transport system permease; binding-protein-dependent transport system inner membrane protein 3138693 5741848 Cphy_2570 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001559670.1 3137758 R 357809 CDS YP_001559671.1 160880703 5741849 complement(3138707..3139672) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2339 ABC transporter, permease; binding-protein-dependent transport system inner membrane protein 3139672 5741849 Cphy_2571 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001559671.1 3138707 R 357809 CDS YP_001559672.1 160880704 5741850 3140149..3141216 1 NC_010001.1 PFAM: glycoside hydrolase family 18; SMART: chitinase II; KEGG: bha:BH0916 chitinase; glycoside hydrolase family protein 3141216 5741850 Cphy_2572 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001559672.1 3140149 D 357809 CDS YP_001559673.1 160880705 5742738 complement(3141426..3142094) 1 NC_010001.1 hypothetical protein 3142094 5742738 Cphy_2573 Clostridium phytofermentans ISDg hypothetical protein YP_001559673.1 3141426 R 357809 CDS YP_001559674.1 160880706 5742739 complement(3142451..3143920) 1 NC_010001.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: swo:Swol_0116 lysyl-tRNA synthetase; lysyl-tRNA synthetase 3143920 5742739 Cphy_2574 Clostridium phytofermentans ISDg lysyl-tRNA synthetase YP_001559674.1 3142451 R 357809 CDS YP_001559675.1 160880707 5742740 complement(3144614..3145144) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_1438 hypothetical protein; N-acetyltransferase GCN5 3145144 5742740 Cphy_2575 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001559675.1 3144614 R 357809 CDS YP_001559676.1 160880708 5742741 complement(3145396..3145902) 1 NC_010001.1 KEGG: rbe:RBE_0461 acetyltransferase; acetyltransferase 3145902 5742741 Cphy_2576 Clostridium phytofermentans ISDg acetyltransferase YP_001559676.1 3145396 R 357809 CDS YP_001559677.1 160880709 5742742 complement(3146075..3146476) 1 NC_010001.1 hypothetical protein 3146476 5742742 Cphy_2577 Clostridium phytofermentans ISDg hypothetical protein YP_001559677.1 3146075 R 357809 CDS YP_001559678.1 160880710 5742743 3146942..3148174 1 NC_010001.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 3148174 5742743 Cphy_2578 Clostridium phytofermentans ISDg tyrosyl-tRNA synthetase YP_001559678.1 3146942 D 357809 CDS YP_001559679.1 160880711 5742744 3148199..3149149 1 NC_010001.1 hypothetical protein 3149149 5742744 Cphy_2579 Clostridium phytofermentans ISDg hypothetical protein YP_001559679.1 3148199 D 357809 CDS YP_001559680.1 160880712 5742745 complement(3149242..3152451) 1 NC_010001.1 KEGG: cth:Cthe_2451 SNF2-related protein; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SNF2 helicase associated domain protein; SMART: DEAD-like helicases; non-specific serine/threonine protein kinase 3152451 5742745 Cphy_2580 Clostridium phytofermentans ISDg non-specific serine/threonine protein kinase YP_001559680.1 3149242 R 357809 CDS YP_001559681.1 160880713 5742746 complement(3152644..3154335) 1 NC_010001.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: cpf:CPF_1731 sulfate permease, SulP family; sulfate transporter 3154335 5742746 Cphy_2581 Clostridium phytofermentans ISDg sulfate transporter YP_001559681.1 3152644 R 357809 CDS YP_001559682.1 160880714 5742747 complement(3154594..3155883) 1 NC_010001.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: cth:Cthe_3179 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 3155883 5742747 Cphy_2582 Clostridium phytofermentans ISDg serine-type D-Ala-D-Ala carboxypeptidase YP_001559682.1 3154594 R 357809 CDS YP_001559683.1 160880715 5742748 complement(3156129..3156698) 1 NC_010001.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: cth:Cthe_0688 transcriptional regulator; segregation and condensation protein B 3156698 5742748 Cphy_2583 Clostridium phytofermentans ISDg segregation and condensation protein B YP_001559683.1 3156129 R 357809 CDS YP_001559684.1 160880716 5742749 complement(3156718..3157497) 1 NC_010001.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: amt:Amet_2531 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA 3157497 5742749 Cphy_2584 Clostridium phytofermentans ISDg chromosome segregation and condensation protein ScpA YP_001559684.1 3156718 R 357809 CDS YP_001559685.1 160880717 5742750 complement(3157502..3158062) 1 NC_010001.1 hypothetical protein 3158062 5742750 Cphy_2585 Clostridium phytofermentans ISDg hypothetical protein YP_001559685.1 3157502 R 357809 CDS YP_001559686.1 160880718 5742751 complement(3158113..3158979) 1 NC_010001.1 PFAM: metallophosphoesterase; KEGG: cdf:CD1123 phosphoesterase; metallophosphoesterase 3158979 5742751 Cphy_2586 Clostridium phytofermentans ISDg metallophosphoesterase YP_001559686.1 3158113 R 357809 CDS YP_001559687.1 160880719 5742752 complement(3159224..3160576) 1 NC_010001.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: csc:Csac_1744 serine-type D-Ala-D-Ala carboxypeptidase; Serine-type D-Ala-D-Ala carboxypeptidase 3160576 5742752 Cphy_2587 Clostridium phytofermentans ISDg Serine-type D-Ala-D-Ala carboxypeptidase YP_001559687.1 3159224 R 357809 CDS YP_001559688.1 160880720 5742753 complement(3160744..3161331) 1 NC_010001.1 KEGG: cac:CAC3086 protein containing cell adhesion domain; hypothetical protein 3161331 5742753 Cphy_2588 Clostridium phytofermentans ISDg hypothetical protein YP_001559688.1 3160744 R 357809 CDS YP_001559689.1 160880721 5742754 complement(3161650..3164493) 1 NC_010001.1 PFAM: protein of unknown function DUF214; KEGG: efa:EF1321 permease domain protein; hypothetical protein 3164493 5742754 Cphy_2589 Clostridium phytofermentans ISDg hypothetical protein YP_001559689.1 3161650 R 357809 CDS YP_001559690.1 160880722 5742755 complement(3164514..3165218) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC0822 ABC transporter, ATP-binding protein; ABC transporter 3165218 5742755 Cphy_2590 Clostridium phytofermentans ISDg ABC transporter YP_001559690.1 3164514 R 357809 CDS YP_001559691.1 160880723 5742756 complement(3165484..3166809) 1 NC_010001.1 KEGG: cno:NT01CX_1499 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; pyrimidine-nucleoside phosphorylase 3166809 5742756 Cphy_2591 Clostridium phytofermentans ISDg pyrimidine-nucleoside phosphorylase YP_001559691.1 3165484 R 357809 CDS YP_001559692.1 160880724 5742757 3167211..3168242 1 NC_010001.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3168242 5742757 Cphy_2592 Clostridium phytofermentans ISDg phospho-2-dehydro-3-deoxyheptonate aldolase YP_001559692.1 3167211 D 357809 CDS YP_001559693.1 160880725 5742758 complement(3168476..3169351) 1 NC_010001.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: amt:Amet_2523 tyrosine recombinase XerD; integrase family protein 3169351 5742758 Cphy_2593 Clostridium phytofermentans ISDg integrase family protein YP_001559693.1 3168476 R 357809 CDS YP_001559694.1 160880726 5742759 complement(3169548..3170114) 1 NC_010001.1 PFAM: protein of unknown function DUF95 transmembrane; KEGG: bce:BC4092 stage II sporulation protein M; hypothetical protein 3170114 5742759 Cphy_2594 Clostridium phytofermentans ISDg hypothetical protein YP_001559694.1 3169548 R 357809 CDS YP_001559695.1 160880727 5742760 complement(3170220..3170750) 1 NC_010001.1 PFAM: NUDIX hydrolase; KEGG: tte:TTE1310 NTP pyrophosphohydrolases including oxidative damage repair enzymes; NUDIX hydrolase 3170750 5742760 Cphy_2595 Clostridium phytofermentans ISDg NUDIX hydrolase YP_001559695.1 3170220 R 357809 CDS YP_001559696.1 160880728 5742761 complement(3171201..3172373) 1 NC_010001.1 PFAM: Ig domain protein group 2 domain protein; KEGG: cth:Cthe_0056 Ig-like, group 2; Ig domain-containing protein 3172373 5742761 Cphy_2596 Clostridium phytofermentans ISDg Ig domain-containing protein YP_001559696.1 3171201 R 357809 CDS YP_001559697.1 160880729 5742762 3172580..3173884 1 NC_010001.1 KEGG: ckl:CKL_2277 predicted transposase; transposase 3173884 5742762 Cphy_2597 Clostridium phytofermentans ISDg transposase YP_001559697.1 3172580 D 357809 CDS YP_001559698.1 160880730 5742763 complement(3174862..3176412) 1 NC_010001.1 KEGG: cth:Cthe_1091 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; YmdA/YtgF protein; PFAM: KH type 1 domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; RNA binding metal dependent phosphohydrolase 3176412 5742763 Cphy_2598 Clostridium phytofermentans ISDg RNA binding metal dependent phosphohydrolase YP_001559698.1 3174862 R 357809 CDS YP_001559699.1 160880731 5742764 complement(3176597..3178060) 1 NC_010001.1 KEGG: cdf:CD1986 radical SAM protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; tRNA-i(6)A37 thiotransferase enzyme MiaB 3178060 5742764 Cphy_2599 Clostridium phytofermentans ISDg tRNA-i(6)A37 thiotransferase enzyme MiaB YP_001559699.1 3176597 R 357809 CDS YP_001559700.1 160880732 5742765 complement(3178387..3179634) 1 NC_010001.1 TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase_; KEGG: tte:TTE1278 Gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 3179634 5742765 Cphy_2600 Clostridium phytofermentans ISDg gamma-glutamyl phosphate reductase YP_001559700.1 3178387 R 357809 CDS YP_001559701.1 160880733 5742766 complement(3179740..3180312) 1 NC_010001.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: cno:NT01CX_1657 5-formyltetrahydrofolate cyclo-ligase family protein; 5-formyltetrahydrofolate cyclo-ligase 3180312 5742766 Cphy_2601 Clostridium phytofermentans ISDg 5-formyltetrahydrofolate cyclo-ligase YP_001559701.1 3179740 R 357809 CDS YP_001559702.1 160880734 5742767 complement(3180315..3180524) 1 NC_010001.1 PFAM: protein of unknown function DUF896; KEGG: bld:BLi02035 YnzC; hypothetical protein 3180524 5742767 Cphy_2602 Clostridium phytofermentans ISDg hypothetical protein YP_001559702.1 3180315 R 357809 CDS YP_001559703.1 160880735 5742768 complement(3180849..3181697) 1 NC_010001.1 KEGG: cbe:Cbei_0024 glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; glutamate 5-kinase 3181697 5742768 Cphy_2603 Clostridium phytofermentans ISDg glutamate 5-kinase YP_001559703.1 3180849 R 357809 CDS YP_001559704.1 160880736 5742769 complement(3181852..3183498) 1 NC_010001.1 KEGG: cbh:CLC_3373 oxidoreductase, FAD-binding; oxidoreductase, FAD-binding 3183498 5742769 Cphy_2604 Clostridium phytofermentans ISDg oxidoreductase, FAD-binding YP_001559704.1 3181852 R 357809 CDS YP_001559705.1 160880737 5742770 complement(3183517..3184740) 1 NC_010001.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: drm:Dred_1437 HI0933 family protein; hypothetical protein 3184740 5742770 Cphy_2605 Clostridium phytofermentans ISDg hypothetical protein YP_001559705.1 3183517 R 357809 CDS YP_001559706.1 160880738 5742771 complement(3184797..3185477) 1 NC_010001.1 KEGG: tte:TTE1137 hypothetical protein; hypothetical protein 3185477 5742771 Cphy_2606 Clostridium phytofermentans ISDg hypothetical protein YP_001559706.1 3184797 R 357809 CDS YP_001559707.1 160880739 5742772 complement(3185539..3187173) 1 NC_010001.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: amt:Amet_1383 polysaccharide biosynthesis protein; virulence factor MVIN family protein 3187173 5742772 Cphy_2607 Clostridium phytofermentans ISDg virulence factor MVIN family protein YP_001559707.1 3185539 R 357809 CDS YP_001559708.1 160880740 5742773 complement(3187347..3188606) 1 NC_010001.1 KEGG: cth:Cthe_0155 hypothetical protein; hypothetical protein 3188606 5742773 Cphy_2608 Clostridium phytofermentans ISDg hypothetical protein YP_001559708.1 3187347 R 357809 CDS YP_001559709.1 160880741 5742774 complement(3188711..3189208) 1 NC_010001.1 PFAM: protein of unknown function UPF0054; KEGG: cno:NT01CX_0046 hypothetical protein; hypothetical protein 3189208 5742774 Cphy_2609 Clostridium phytofermentans ISDg hypothetical protein YP_001559709.1 3188711 R 357809 CDS YP_001559710.1 160880742 5742775 complement(3189247..3190614) 1 NC_010001.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ckl:CKL_0912 predicted membrane-associated hydrolase; metal dependent phosphohydrolase 3190614 5742775 Cphy_2610 Clostridium phytofermentans ISDg metal dependent phosphohydrolase YP_001559710.1 3189247 R 357809 CDS YP_001559711.1 160880743 5742776 complement(3190646..3191701) 1 NC_010001.1 PFAM: PhoH family protein; KEGG: tte:TTE0970 Phosphate starvation-inducible protein PhoH, predicted ATPase; PhoH family protein 3191701 5742776 Cphy_2611 Clostridium phytofermentans ISDg PhoH family protein YP_001559711.1 3190646 R 357809 CDS YP_001559712.1 160880744 5742777 complement(3191676..3192914) 1 NC_010001.1 PFAM: stage IV sporulation YqfD; KEGG: bcy:Bcer98_3032 stage IV sporulation YqfD; stage IV sporulation YqfD 3192914 5742777 Cphy_2612 Clostridium phytofermentans ISDg stage IV sporulation YqfD YP_001559712.1 3191676 R 357809 CDS YP_001559713.1 160880745 5742778 complement(3192997..3193380) 1 NC_010001.1 PFAM: protein of unknown function DUF1429; KEGG: amt:Amet_3035 protein of unknown function DUF1429; hypothetical protein 3193380 5742778 Cphy_2613 Clostridium phytofermentans ISDg hypothetical protein YP_001559713.1 3192997 R 357809 CDS YP_001559714.1 160880746 5742779 complement(3193740..3194405) 1 NC_010001.1 PFAM: nitrogen regulatory protein P-II; KEGG: amt:Amet_3184 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 3194405 5742779 Cphy_2614 Clostridium phytofermentans ISDg nitrogen regulatory protein P-II YP_001559714.1 3193740 R 357809 CDS YP_001559715.1 160880747 5742780 complement(3194398..3195924) 1 NC_010001.1 PFAM: protein of unknown function DUF1538; KEGG: cbo:CBO2972 membrane protein; hypothetical protein 3195924 5742780 Cphy_2615 Clostridium phytofermentans ISDg hypothetical protein YP_001559715.1 3194398 R 357809 CDS YP_001559716.1 160880748 5742781 complement(3196418..3196594) 1 NC_010001.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3196594 rpsU 5742781 rpsU Clostridium phytofermentans ISDg 30S ribosomal protein S21 YP_001559716.1 3196418 R 357809 CDS YP_001559717.1 160880749 5742782 complement(3196835..3199474) 1 NC_010001.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 3199474 alaS 5742782 alaS Clostridium phytofermentans ISDg alanyl-tRNA synthetase YP_001559717.1 3196835 R 357809 CDS YP_001559718.1 160880750 5742783 3200545..3201744 1 NC_010001.1 PFAM: Ig domain protein group 2 domain protein; KEGG: cth:Cthe_0056 Ig-like, group 2; Ig domain-containing protein 3201744 5742783 Cphy_2618 Clostridium phytofermentans ISDg Ig domain-containing protein YP_001559718.1 3200545 D 357809 CDS YP_001559719.1 160880751 5742786 complement(3202794..3207377) 1 NC_010001.1 KEGG: cth:Cthe_0996 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, epsilon subunit; DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; Exonuclease RNase T and DNA polymerase III; SMART: phosphoesterase PHP domain protein; Exonuclease; DNA polymerase III subunit alpha 3207377 5742786 Cphy_2619 Clostridium phytofermentans ISDg DNA polymerase III subunit alpha YP_001559719.1 3202794 R 357809 CDS YP_001559720.1 160880752 5742787 complement(3207589..3208641) 1 NC_010001.1 KEGG: cth:Cthe_0997 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 3208641 5742787 Cphy_2620 Clostridium phytofermentans ISDg 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_001559720.1 3207589 R 357809 CDS YP_001559721.1 160880753 5742788 complement(3208713..3210005) 1 NC_010001.1 KEGG: cth:Cthe_0998 membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc metalloprotease 3210005 5742788 Cphy_2621 Clostridium phytofermentans ISDg membrane-associated zinc metalloprotease YP_001559721.1 3208713 R 357809 CDS YP_001559722.1 160880754 5742789 complement(3210043..3211209) 1 NC_010001.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3211209 5742789 Cphy_2622 Clostridium phytofermentans ISDg 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_001559722.1 3210043 R 357809 CDS YP_001559723.1 160880755 5742790 complement(3211320..3212129) 1 NC_010001.1 PFAM: phosphatidate cytidylyltransferase; KEGG: cth:Cthe_1000 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 3212129 5742790 Cphy_2623 Clostridium phytofermentans ISDg phosphatidate cytidylyltransferase YP_001559723.1 3211320 R 357809 CDS YP_001559724.1 160880756 5742791 complement(3212183..3212905) 1 NC_010001.1 KEGG: csc:Csac_2355 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 3212905 5742791 Cphy_2624 Clostridium phytofermentans ISDg undecaprenyl diphosphate synthase YP_001559724.1 3212183 R 357809 CDS YP_001559725.1 160880757 5742792 complement(3213250..3213804) 1 NC_010001.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 3213804 frr 5742792 frr Clostridium phytofermentans ISDg ribosome recycling factor YP_001559725.1 3213250 R 357809 CDS YP_001559726.1 160880758 5742793 complement(3213846..3214550) 1 NC_010001.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: cth:Cthe_1004 uridylate kinase; uridylate kinase 3214550 5742793 Cphy_2626 Clostridium phytofermentans ISDg uridylate kinase YP_001559726.1 3213846 R 357809 CDS YP_001559727.1 160880759 5742794 complement(3214681..3215790) 1 NC_010001.1 KEGG: mmu:100043744 similar to retinitis pigmentosa GTPase regulator; hypothetical protein 3215790 5742794 Cphy_2627 Clostridium phytofermentans ISDg hypothetical protein YP_001559727.1 3214681 R 357809 CDS YP_001559728.1 160880760 5742795 complement(3215937..3216515) 1 NC_010001.1 PFAM: regulatory protein ArsR; KEGG: gur:Gura_3531 regulatory protein, ArsR; ArsR family transcriptional regulator 3216515 5742795 Cphy_2628 Clostridium phytofermentans ISDg ArsR family transcriptional regulator YP_001559728.1 3215937 R 357809 CDS YP_001559729.1 160880761 5742796 complement(3216530..3216907) 1 NC_010001.1 hypothetical protein 3216907 5742796 Cphy_2629 Clostridium phytofermentans ISDg hypothetical protein YP_001559729.1 3216530 R 357809 CDS YP_001559730.1 160880762 5742797 complement(3217257..3218030) 1 NC_010001.1 KEGG: sat:SYN_02020 nitroreductase family protein; nitroreductase family protein 3218030 5742797 Cphy_2630 Clostridium phytofermentans ISDg nitroreductase family protein YP_001559730.1 3217257 R 357809 CDS YP_001559731.1 160880763 5742798 complement(3218143..3218523) 1 NC_010001.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lmf:LMOf2365_0426 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 3218523 5742798 Cphy_2631 Clostridium phytofermentans ISDg glyoxalase/bleomycin resistance protein/dioxygenase YP_001559731.1 3218143 R 357809 CDS YP_001559732.1 160880764 5742799 complement(3218942..3220573) 1 NC_010001.1 PFAM: glycoside hydrolase family 43; KEGG: bvu:BVU_1983 glycoside hydrolase family 43, candidate beta-xylosidase/alpha-L-arabinofuranosidase; glycoside hydrolase family protein 3220573 5742799 Cphy_2632 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001559732.1 3218942 R 357809 CDS YP_001559733.1 160880765 5742800 complement(3220769..3221194) 1 NC_010001.1 KEGG: cno:NT01CX_2100 flavodoxin; flavodoxin 3221194 5742800 Cphy_2633 Clostridium phytofermentans ISDg flavodoxin YP_001559733.1 3220769 R 357809 CDS YP_001559734.1 160880766 5742801 complement(3222015..3222473) 1 NC_010001.1 PFAM: protein of unknown function DUF861 cupin_3; Ethanolamine utilisation EutQ family protein; KEGG: cdf:CD1925 ethanolamine/propanediol utilization protein; ethanolamine utilisation EutQ family protein 3222473 5742801 Cphy_2634 Clostridium phytofermentans ISDg ethanolamine utilisation EutQ family protein YP_001559734.1 3222015 R 357809 CDS YP_001559735.1 160880767 5742802 complement(3222582..3223670) 1 NC_010001.1 PFAM: Ethanolamine utilisation protein EutH; KEGG: cdf:CD1924 ethanolamine/propanediol transporter; ethanolamine utilisation protein EutH 3223670 5742802 Cphy_2635 Clostridium phytofermentans ISDg ethanolamine utilisation protein EutH YP_001559735.1 3222582 R 357809 CDS YP_001559736.1 160880768 5742803 complement(3223683..3224240) 1 NC_010001.1 PFAM: microcompartments protein; KEGG: cdf:CD1923 ethanolamine/propanediol utilization protein; microcompartments protein 3224240 5742803 Cphy_2636 Clostridium phytofermentans ISDg microcompartments protein YP_001559736.1 3223683 R 357809 CDS YP_001559737.1 160880769 5742804 complement(3224230..3224505) 1 NC_010001.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cpf:CPF_0900 ethanolamine utilization protein EutN; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 3224505 5742804 Cphy_2637 Clostridium phytofermentans ISDg ethanolamine utilization protein EutN/carboxysome structural protein Ccml YP_001559737.1 3224230 R 357809 CDS YP_001559738.1 160880770 5742805 complement(3224521..3225243) 1 NC_010001.1 KEGG: cdf:CD1921 ethanolamine utilization/propanediol conserved hypothetical protein; hypothetical protein 3225243 5742805 Cphy_2638 Clostridium phytofermentans ISDg hypothetical protein YP_001559738.1 3224521 R 357809 CDS YP_001559739.1 160880771 5742806 complement(3225395..3226042) 1 NC_010001.1 PFAM: Propanediol utilization protein; KEGG: cpe:CPE0905 probable propanediol utilization protein; propanediol utilization protein 3226042 5742806 Cphy_2639 Clostridium phytofermentans ISDg propanediol utilization protein YP_001559739.1 3225395 R 357809 CDS YP_001559740.1 160880772 5742807 complement(3226236..3227033) 1 NC_010001.1 PFAM: cobalamin adenosyltransferase; KEGG: cpf:CPF_0897 ethanolamine utilization cobalamin adenosyltransferase; cobalamin adenosyltransferase 3227033 5742807 Cphy_2640 Clostridium phytofermentans ISDg cobalamin adenosyltransferase YP_001559740.1 3226236 R 357809 CDS YP_001559741.1 160880773 5742808 complement(3227139..3227429) 1 NC_010001.1 PFAM: microcompartments protein; KEGG: efa:EF1623 microcompartment protein; microcompartments protein 3227429 5742808 Cphy_2641 Clostridium phytofermentans ISDg microcompartments protein YP_001559741.1 3227139 R 357809 CDS YP_001559742.1 160880774 5742809 complement(3227497..3228984) 1 NC_010001.1 TIGRFAM: acetaldehyde dehydrogenase (acetylating); PFAM: Aldehyde Dehydrogenase_; KEGG: cdf:CD1917 ethanolamine/propanediol utilisation aldehyde-alcohol dehydrogenase; acetaldehyde dehydrogenase 3228984 5742809 Cphy_2642 Clostridium phytofermentans ISDg acetaldehyde dehydrogenase YP_001559742.1 3227497 R 357809 CDS YP_001559743.1 160880775 5742810 complement(3228999..3230090) 1 NC_010001.1 PFAM: microcompartments protein; KEGG: ckl:CKL_0845 predicted microcompartment shellprotein; microcompartments protein 3230090 5742810 Cphy_2643 Clostridium phytofermentans ISDg microcompartments protein YP_001559743.1 3228999 R 357809 CDS YP_001559744.1 160880776 5742811 complement(3230092..3230748) 1 NC_010001.1 PFAM: microcompartments protein; KEGG: cdf:CD1915 ethanolamine/propanediol utilization protein; microcompartments protein 3230748 5742811 Cphy_2644 Clostridium phytofermentans ISDg microcompartments protein YP_001559744.1 3230092 R 357809 CDS YP_001559745.1 160880777 5742812 complement(3230864..3231754) 1 NC_010001.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 3231754 5742812 Cphy_2645 Clostridium phytofermentans ISDg ethanolamine ammonia-lyase small subunit YP_001559745.1 3230864 R 357809 CDS YP_001559746.1 160880778 5742813 complement(3231785..3233149) 1 NC_010001.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: cpf:CPF_0891 ethanolamine ammonia-lyase, large subunit; ethanolamine ammonia lyase large subunit 3233149 5742813 Cphy_2646 Clostridium phytofermentans ISDg ethanolamine ammonia lyase large subunit YP_001559746.1 3231785 R 357809 CDS YP_001559747.1 160880779 5742814 complement(3233313..3234782) 1 NC_010001.1 ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase 3234782 eutA 5742814 eutA Clostridium phytofermentans ISDg reactivating factor for ethanolamine ammonia lyase YP_001559747.1 3233313 R 357809 CDS YP_001559748.1 160880780 5742815 complement(3234881..3235330) 1 NC_010001.1 TIGRFAM: ethanolamine utilization protein, EutP; KEGG: cpf:CPF_0887 ethanolamine utilization protein, EutP; ethanolamine utilization protein, EutP 3235330 5742815 Cphy_2648 Clostridium phytofermentans ISDg ethanolamine utilization protein, EutP YP_001559748.1 3234881 R 357809 CDS YP_001559749.1 160880781 5742816 complement(3235495..3235848) 1 NC_010001.1 PFAM: microcompartments protein; KEGG: cdf:CD1908 ethanolamine/propanediol utilization protein; microcompartments protein 3235848 5742816 Cphy_2649 Clostridium phytofermentans ISDg microcompartments protein YP_001559749.1 3235495 R 357809 CDS YP_001559750.1 160880782 5742817 complement(3235873..3237003) 1 NC_010001.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cpf:CPF_0885 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 3237003 5742817 Cphy_2650 Clostridium phytofermentans ISDg iron-containing alcohol dehydrogenase YP_001559750.1 3235873 R 357809 CDS YP_001559751.1 160880783 5742818 complement(3237415..3238164) 1 NC_010001.1 KEGG: tde:TDE1697 phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 3238164 5742818 Cphy_2651 Clostridium phytofermentans ISDg phosphoglycerate mutase YP_001559751.1 3237415 R 357809 CDS YP_001559752.1 160880784 5742819 3238503..3239213 1 NC_010001.1 PFAM: AraC protein arabinose-binding/dimerisation; KEGG: cbe:Cbei_4840 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 3239213 5742819 Cphy_2652 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001559752.1 3238503 D 357809 CDS YP_001559753.1 160880785 5742820 3239229..3239465 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_4840 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 3239465 5742820 Cphy_2653 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001559753.1 3239229 D 357809 CDS YP_001559754.1 160880786 5742821 complement(3239628..3241388) 1 NC_010001.1 KEGG: bcl:ABC0558 sugar ABC transporter substrate-binding protein; sugar ABC transporter substrate-binding protein 3241388 5742821 Cphy_2654 Clostridium phytofermentans ISDg sugar ABC transporter substrate-binding protein YP_001559754.1 3239628 R 357809 CDS YP_001559755.1 160880787 5742822 complement(3241527..3242447) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0557 sugar ABC transporter permease; binding-protein-dependent transport systems inner membrane component 3242447 5742822 Cphy_2655 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001559755.1 3241527 R 357809 CDS YP_001559756.1 160880788 5742823 complement(3242462..3243409) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein 3243409 5742823 Cphy_2656 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001559756.1 3242462 R 357809 CDS YP_001559757.1 160880789 5742824 complement(3243882..3244874) 1 NC_010001.1 PFAM: aldo/keto reductase; KEGG: cbe:Cbei_3974 aldo/keto reductase; aldo/keto reductase 3244874 5742824 Cphy_2657 Clostridium phytofermentans ISDg aldo/keto reductase YP_001559757.1 3243882 R 357809 CDS YP_001559758.1 160880790 5742825 3245520..3247439 1 NC_010001.1 PFAM: protein of unknown function DUF303 acetylesterase ; glycoside hydrolase family 2 sugar binding; KEGG: csc:Csac_0206 protein of unknown function DUF303, acetylesterase; hypothetical protein 3247439 5742825 Cphy_2658 Clostridium phytofermentans ISDg hypothetical protein YP_001559758.1 3245520 D 357809 CDS YP_001559759.1 160880791 5742826 complement(3248052..3249038) 1 NC_010001.1 TIGRFAM: diaminopimelate dehydrogenase; KEGG: cth:Cthe_0922 diaminopimelate dehydrogenase; diaminopimelate dehydrogenase 3249038 5742826 Cphy_2659 Clostridium phytofermentans ISDg diaminopimelate dehydrogenase YP_001559759.1 3248052 R 357809 CDS YP_001559760.1 160880792 5742827 3249695..3250615 1 NC_010001.1 PFAM: Aldose 1-epimerase; KEGG: dge:Dgeo_2023 aldose 1-epimerase; aldose 1-epimerase 3250615 5742827 Cphy_2660 Clostridium phytofermentans ISDg aldose 1-epimerase YP_001559760.1 3249695 D 357809 CDS YP_001559761.1 160880793 5742828 complement(3250749..3251186) 1 NC_010001.1 PFAM: regulatory protein MarR; KEGG: amt:Amet_2072 transcriptional regulator, MarR family; MarR family transcriptional regulator 3251186 5742828 Cphy_2661 Clostridium phytofermentans ISDg MarR family transcriptional regulator YP_001559761.1 3250749 R 357809 CDS YP_001559762.1 160880794 5742829 complement(3251365..3251910) 1 NC_010001.1 PFAM: glutathione peroxidase; KEGG: fnu:FN2007 glutathione peroxidase; glutathione peroxidase 3251910 5742829 Cphy_2662 Clostridium phytofermentans ISDg glutathione peroxidase YP_001559762.1 3251365 R 357809 CDS YP_001559763.1 160880795 5742830 complement(3252012..3252485) 1 NC_010001.1 PFAM: glutathione peroxidase; KEGG: cpf:CPF_0904 glutathione peroxidase; glutathione peroxidase 3252485 5742830 Cphy_2663 Clostridium phytofermentans ISDg glutathione peroxidase YP_001559763.1 3252012 R 357809 CDS YP_001559764.1 160880796 5742831 complement(3252754..3253260) 1 NC_010001.1 PFAM: transcription factor CarD; KEGG: cdf:CD3037 regulatory protein; CarD family transcriptional regulator 3253260 5742831 Cphy_2664 Clostridium phytofermentans ISDg CarD family transcriptional regulator YP_001559764.1 3252754 R 357809 CDS YP_001559765.1 160880797 5742832 complement(3253787..3255541) 1 NC_010001.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: ctc:CTC02286 threonyl-tRNA synthetase; threonyl-tRNA synthetase 3255541 5742832 Cphy_2665 Clostridium phytofermentans ISDg threonyl-tRNA synthetase YP_001559765.1 3253787 R 357809 CDS YP_001559766.1 160880798 5742833 complement(3255879..3256547) 1 NC_010001.1 KEGG: amt:Amet_3774 periplasmic binding protein; periplasmic binding protein 3256547 5742833 Cphy_2666 Clostridium phytofermentans ISDg periplasmic binding protein YP_001559766.1 3255879 R 357809 CDS YP_001559767.1 160880799 5742834 3256913..3257491 1 NC_010001.1 PFAM: regulatory protein TetR; KEGG: cbh:CLC_0816 transcriptional regulator; TetR family transcriptional regulator 3257491 5742834 Cphy_2667 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001559767.1 3256913 D 357809 CDS YP_001559768.1 160880800 5742835 3257504..3257761 1 NC_010001.1 KEGG: cbh:CLC_0817 hypothetical protein; hypothetical protein 3257761 5742835 Cphy_2668 Clostridium phytofermentans ISDg hypothetical protein YP_001559768.1 3257504 D 357809 CDS YP_001559769.1 160880801 5742836 complement(3258027..3258890) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 3; KEGG: sgo:SGO_0982 amino acid ABC transporter, amino acid-binding protein; extracellular solute-binding protein 3258890 5742836 Cphy_2669 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001559769.1 3258027 R 357809 CDS YP_001559770.1 160880802 5742837 complement(3258987..3259742) 1 NC_010001.1 PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_2512 ABC transporter related; ABC transporter 3259742 5742837 Cphy_2670 Clostridium phytofermentans ISDg ABC transporter YP_001559770.1 3258987 R 357809 CDS YP_001559771.1 160880803 5742838 complement(3259747..3260424) 1 NC_010001.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ste:STER_1541 ABC-type amino acid transport system, permease component; polar amino acid ABC transporter inner membrane subunit 3260424 5742838 Cphy_2671 Clostridium phytofermentans ISDg polar amino acid ABC transporter inner membrane subunit YP_001559771.1 3259747 R 357809 CDS YP_001559772.1 160880804 5742839 complement(3260384..3261064) 1 NC_010001.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgo:SGO_0985 amino acid ABC transporter, permease SP0711; polar amino acid ABC transporter inner membrane subunit 3261064 5742839 Cphy_2672 Clostridium phytofermentans ISDg polar amino acid ABC transporter inner membrane subunit YP_001559772.1 3260384 R 357809 CDS YP_001559773.1 160880805 5742840 3262256..3263230 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0487 ABC transporter, ATP-binding protein; ABC transporter 3263230 5742840 Cphy_2673 Clostridium phytofermentans ISDg ABC transporter YP_001559773.1 3262256 D 357809 CDS YP_001559774.1 160880806 5742841 3263227..3264030 1 NC_010001.1 KEGG: tde:TDE0486 membrane protein; hypothetical protein 3264030 5742841 Cphy_2674 Clostridium phytofermentans ISDg hypothetical protein YP_001559774.1 3263227 D 357809 CDS YP_001559775.1 160880807 5742842 3264166..3264915 1 NC_010001.1 PFAM: protein of unknown function DUF990; KEGG: tde:TDE0485 membrane protein; hypothetical protein 3264915 5742842 Cphy_2675 Clostridium phytofermentans ISDg hypothetical protein YP_001559775.1 3264166 D 357809 CDS YP_001559776.1 160880808 5742843 complement(3265535..3266551) 1 NC_010001.1 KEGG: cbf:CLI_3233 hypothetical protein; hypothetical protein 3266551 5742843 Cphy_2676 Clostridium phytofermentans ISDg hypothetical protein YP_001559776.1 3265535 R 357809 CDS YP_001559777.1 160880809 5742844 complement(3266561..3267955) 1 NC_010001.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cbf:CLI_3234 radical SAM domain protein; radical SAM domain-containing protein 3267955 5742844 Cphy_2677 Clostridium phytofermentans ISDg radical SAM domain-containing protein YP_001559777.1 3266561 R 357809 CDS YP_001559778.1 160880810 5742845 3268469..3269269 1 NC_010001.1 PFAM: ribonuclease BN; KEGG: cbe:Cbei_4879 ribonuclease BN; ribonuclease BN 3269269 5742845 Cphy_2678 Clostridium phytofermentans ISDg ribonuclease BN YP_001559778.1 3268469 D 357809 CDS YP_001559779.1 160880811 5742846 complement(3269339..3270271) 1 NC_010001.1 TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; Translation elongation factor EFTs/EF1B dimerisation; KEGG: ctc:CTC01262 protein translation elongation factor TS; translation elongation factor Ts 3270271 5742846 Cphy_2679 Clostridium phytofermentans ISDg translation elongation factor Ts YP_001559779.1 3269339 R 357809 CDS YP_001559780.1 160880812 5742847 complement(3270485..3271225) 1 NC_010001.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 3271225 rpsB 5742847 rpsB Clostridium phytofermentans ISDg 30S ribosomal protein S2 YP_001559780.1 3270485 R 357809 CDS YP_001559781.1 160880813 5742848 complement(3271467..3272234) 1 NC_010001.1 KEGG: bpu:BPUM_2222 hypothetical protein; hypothetical protein 3272234 5742848 Cphy_2681 Clostridium phytofermentans ISDg hypothetical protein YP_001559781.1 3271467 R 357809 CDS YP_001559782.1 160880814 5742849 complement(3272356..3273069) 1 NC_010001.1 KEGG: mmu:20957 synaptonemal complex protein 1; hypothetical protein 3273069 5742849 Cphy_2682 Clostridium phytofermentans ISDg hypothetical protein YP_001559782.1 3272356 R 357809 CDS YP_001559783.1 160880815 5742850 complement(3273088..3273411) 1 NC_010001.1 hypothetical protein 3273411 5742850 Cphy_2683 Clostridium phytofermentans ISDg hypothetical protein YP_001559783.1 3273088 R 357809 CDS YP_001559784.1 160880816 5742851 complement(3273439..3275037) 1 NC_010001.1 PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 protein of unknown function DUF342; hypothetical protein 3275037 5742851 Cphy_2684 Clostridium phytofermentans ISDg hypothetical protein YP_001559784.1 3273439 R 357809 CDS YP_001559785.1 160880817 5742852 complement(3275119..3275883) 1 NC_010001.1 KEGG: lic:LIC11380 RNA polymerase sigma-28 factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; RNA polymerase sigma 28 subunit FliA/WhiG 3275883 5742852 Cphy_2685 Clostridium phytofermentans ISDg RNA polymerase sigma 28 subunit FliA/WhiG YP_001559785.1 3275119 R 357809 CDS YP_001559786.1 160880818 5742853 complement(3275915..3276238) 1 NC_010001.1 hypothetical protein 3276238 5742853 Cphy_2686 Clostridium phytofermentans ISDg hypothetical protein YP_001559786.1 3275915 R 357809 CDS YP_001559787.1 160880819 5742854 complement(3276291..3276776) 1 NC_010001.1 stimulates methylation of MCP proteins; PFAM: CheD family protein; KEGG: bha:BH2433 methylation of methyl-accepting chemotaxis protein; hypothetical protein 3276776 5742854 Cphy_2687 Clostridium phytofermentans ISDg hypothetical protein YP_001559787.1 3276291 R 357809 CDS YP_001559788.1 160880820 5742855 complement(3276784..3277401) 1 NC_010001.1 PFAM: CheC domain protein; KEGG: cth:Cthe_0492 CheC, inhibitor of MCP methylation; chemotaxis protein CheC 3277401 5742855 Cphy_2688 Clostridium phytofermentans ISDg chemotaxis protein CheC YP_001559788.1 3276784 R 357809 CDS YP_001559789.1 160880821 5742856 complement(3277480..3277947) 1 NC_010001.1 PFAM: CheW domain protein; KEGG: cth:Cthe_0491 CheW protein; chemotaxis protein CheW 3277947 5742856 Cphy_2689 Clostridium phytofermentans ISDg chemotaxis protein CheW YP_001559789.1 3277480 R 357809 CDS YP_001559790.1 160880822 5742857 complement(3277960..3280053) 1 NC_010001.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: cth:Cthe_0490 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase 3280053 5742857 Cphy_2690 Clostridium phytofermentans ISDg CheA signal transduction histidine kinase YP_001559790.1 3277960 R 357809 CDS YP_001559791.1 160880823 5742858 complement(3280055..3281173) 1 NC_010001.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: cth:Cthe_0489 response regulator receiver modulated CheB methylesterase; response regulator receiver modulated CheB methylesterase 3281173 5742858 Cphy_2691 Clostridium phytofermentans ISDg response regulator receiver modulated CheB methylesterase YP_001559791.1 3280055 R 357809 CDS YP_001559792.1 160880824 5742859 complement(3281288..3282049) 1 NC_010001.1 PFAM: type IV pilus assembly PilZ; KEGG: csc:Csac_1280 type IV pilus assembly PilZ; type IV pilus assembly PilZ 3282049 5742859 Cphy_2692 Clostridium phytofermentans ISDg type IV pilus assembly PilZ YP_001559792.1 3281288 R 357809 CDS YP_001559793.1 160880825 5742860 complement(3282076..3282957) 1 NC_010001.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cth:Cthe_0487 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 3282957 5742860 Cphy_2693 Clostridium phytofermentans ISDg cobyrinic acid ac-diamide synthase YP_001559793.1 3282076 R 357809 CDS YP_001559794.1 160880826 5742861 complement(3282958..3284172) 1 NC_010001.1 PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; KEGG: cth:Cthe_0486 GTP-binding signal recognition particle SRP54, G-domain; GTP-binding signal recognition particle 3284172 5742861 Cphy_2694 Clostridium phytofermentans ISDg GTP-binding signal recognition particle YP_001559794.1 3282958 R 357809 CDS YP_001559795.1 160880827 5742862 complement(3284172..3286205) 1 NC_010001.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: cth:Cthe_0485 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA 3286205 5742862 Cphy_2695 Clostridium phytofermentans ISDg flagellar biosynthesis protein FlhA YP_001559795.1 3284172 R 357809 CDS YP_001559796.1 160880828 5742863 complement(3286229..3287350) 1 NC_010001.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: cno:NT01CX_1918 flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB 3287350 5742863 Cphy_2696 Clostridium phytofermentans ISDg flagellar biosynthetic protein FlhB YP_001559796.1 3286229 R 357809 CDS YP_001559797.1 160880829 5742864 complement(3287373..3288140) 1 NC_010001.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: csc:Csac_1275 flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR 3288140 5742864 Cphy_2697 Clostridium phytofermentans ISDg flagellar biosynthetic protein FliR YP_001559797.1 3287373 R 357809 CDS YP_001559798.1 160880830 5742991 complement(3288152..3288421) 1 NC_010001.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: cvi:CV_3125 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 3288421 5742991 Cphy_2698 Clostridium phytofermentans ISDg flagellar biosynthetic protein FliQ YP_001559798.1 3288152 R 357809 CDS YP_001559799.1 160880831 5742992 complement(3288437..3289282) 1 NC_010001.1 KEGG: swo:Swol_0865 flagellar biosynthetic protein; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; flagellar biosynthetic protein FliP 3289282 5742992 Cphy_2699 Clostridium phytofermentans ISDg flagellar biosynthetic protein FliP YP_001559799.1 3288437 R 357809 CDS YP_001559800.1 160880832 5742993 complement(3289289..3289711) 1 NC_010001.1 KEGG: tte:TTE1427 flagellar protein FliO/FliZ; hypothetical protein 3289711 5742993 Cphy_2700 Clostridium phytofermentans ISDg hypothetical protein YP_001559800.1 3289289 R 357809 CDS YP_001559801.1 160880833 5742994 complement(3289711..3290073) 1 NC_010001.1 PFAM: response regulator receiver; KEGG: csc:Csac_1271 response regulator receiver protein; response regulator receiver protein 3290073 5742994 Cphy_2701 Clostridium phytofermentans ISDg response regulator receiver protein YP_001559801.1 3289711 R 357809 CDS YP_001559802.1 160880834 5742995 complement(3290160..3291365) 1 NC_010001.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 CheC, inhibitor of MCP methylation; chemotaxis protein CheC 3291365 5742995 Cphy_2702 Clostridium phytofermentans ISDg chemotaxis protein CheC YP_001559802.1 3290160 R 357809 CDS YP_001559803.1 160880835 5742996 complement(3291373..3292350) 1 NC_010001.1 PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: cth:Cthe_0477 flagellar motor switch protein FliM; flagellar motor switch protein FliM 3292350 5742996 Cphy_2703 Clostridium phytofermentans ISDg flagellar motor switch protein FliM YP_001559803.1 3291373 R 357809 CDS YP_001559804.1 160880836 5742997 complement(3292382..3292903) 1 NC_010001.1 hypothetical protein 3292903 5742997 Cphy_2704 Clostridium phytofermentans ISDg hypothetical protein YP_001559804.1 3292382 R 357809 CDS YP_001559805.1 160880837 5742998 complement(3292960..3293787) 1 NC_010001.1 PFAM: OmpA/MotB domain protein; KEGG: dsy:DSY0295 hypothetical protein; OmpA/MotB domain-containing protein 3293787 5742998 Cphy_2705 Clostridium phytofermentans ISDg OmpA/MotB domain-containing protein YP_001559805.1 3292960 R 357809 CDS YP_001559806.1 160880838 5742999 complement(3293768..3294568) 1 NC_010001.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: amt:Amet_2714 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 3294568 5742999 Cphy_2706 Clostridium phytofermentans ISDg MotA/TolQ/ExbB proton channel YP_001559806.1 3293768 R 357809 CDS YP_001559807.1 160880839 5743000 complement(3294700..3294906) 1 NC_010001.1 PFAM: flagellar FlbD family protein; KEGG: tte:TTE1432 uncharacterized protein, possibly involved in motility; flagellar FlbD family protein 3294906 5743000 Cphy_2707 Clostridium phytofermentans ISDg flagellar FlbD family protein YP_001559807.1 3294700 R 357809 CDS YP_001559808.1 160880840 5743001 complement(3295110..3296549) 1 NC_010001.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_0474 protein of unknown function DUF1078-like protein; hypothetical protein 3296549 5743001 Cphy_2708 Clostridium phytofermentans ISDg hypothetical protein YP_001559808.1 3295110 R 357809 CDS YP_001559809.1 160880841 5743002 complement(3296639..3297037) 1 NC_010001.1 TIGRFAM: flagellar operon protein; KEGG: cth:Cthe_0473 flagellar operon protein; flagellar operon protein 3297037 5743002 Cphy_2709 Clostridium phytofermentans ISDg flagellar operon protein YP_001559809.1 3296639 R 357809 CDS YP_001559810.1 160880842 5743003 complement(3297257..3298084) 1 NC_010001.1 PFAM: flagellar hook capping protein; KEGG: cth:Cthe_0472 flagellar hook capping protein; flagellar hook capping protein 3298084 5743003 Cphy_2710 Clostridium phytofermentans ISDg flagellar hook capping protein YP_001559810.1 3297257 R 357809 CDS YP_001559811.1 160880843 5743004 complement(3298102..3299499) 1 NC_010001.1 PFAM: flagellar hook-length control protein; KEGG: cth:Cthe_0471 flagellar hook-length control protein; flagellar hook-length control protein 3299499 5743004 Cphy_2711 Clostridium phytofermentans ISDg flagellar hook-length control protein YP_001559811.1 3298102 R 357809 CDS YP_001559812.1 160880844 5743005 complement(3299731..3300516) 1 NC_010001.1 KEGG: cth:Cthe_0470 hypothetical protein; hypothetical protein 3300516 5743005 Cphy_2712 Clostridium phytofermentans ISDg hypothetical protein YP_001559812.1 3299731 R 357809 CDS YP_001559813.1 160880845 5743006 complement(3300516..3300971) 1 NC_010001.1 TIGRFAM: flagellar export protein FliJ; KEGG: cth:Cthe_0469 flagellar export protein FliJ; flagellar export protein FliJ 3300971 5743006 Cphy_2713 Clostridium phytofermentans ISDg flagellar export protein FliJ YP_001559813.1 3300516 R 357809 CDS YP_001559814.1 160880846 5743007 complement(3301071..3302375) 1 NC_010001.1 KEGG: cth:Cthe_0468 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; flagellar protein export ATPase FliI 3302375 5743007 Cphy_2714 Clostridium phytofermentans ISDg flagellar protein export ATPase FliI YP_001559814.1 3301071 R 357809 CDS YP_001559815.1 160880847 5743008 complement(3302592..3303464) 1 NC_010001.1 KEGG: cth:Cthe_0467 flagellar biosynthesis/type III secretory pathway protein-like protein; hypothetical protein 3303464 5743008 Cphy_2715 Clostridium phytofermentans ISDg hypothetical protein YP_001559815.1 3302592 R 357809 CDS YP_001559816.1 160880848 5743009 complement(3303457..3304476) 1 NC_010001.1 PFAM: flagellar motor switch protein FliG; KEGG: cth:Cthe_0466 flagellar motor switch protein FliG; flagellar motor switch protein FliG 3304476 5743009 Cphy_2716 Clostridium phytofermentans ISDg flagellar motor switch protein FliG YP_001559816.1 3303457 R 357809 CDS YP_001559817.1 160880849 5743010 complement(3304492..3306087) 1 NC_010001.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; KEGG: csc:Csac_1257 flagellar M-ring protein FliF; flagellar M-ring protein FliF 3306087 5743010 Cphy_2717 Clostridium phytofermentans ISDg flagellar M-ring protein FliF YP_001559817.1 3304492 R 357809 CDS YP_001559818.1 160880850 5743011 complement(3306105..3306425) 1 NC_010001.1 PFAM: flagellar hook-basal body complex protein FliE; KEGG: fno:Fnod_1716 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex protein FliE 3306425 5743011 Cphy_2718 Clostridium phytofermentans ISDg flagellar hook-basal body complex protein FliE YP_001559818.1 3306105 R 357809 CDS YP_001559819.1 160880851 5743012 complement(3306446..3306898) 1 NC_010001.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_0463 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 3306898 5743012 Cphy_2719 Clostridium phytofermentans ISDg flagellar basal-body rod protein FlgC YP_001559819.1 3306446 R 357809 CDS YP_001559820.1 160880852 5743013 complement(3306915..3307301) 1 NC_010001.1 TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: amt:Amet_2728 flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB 3307301 5743013 Cphy_2720 Clostridium phytofermentans ISDg flagellar basal-body rod protein FlgB YP_001559820.1 3306915 R 357809 CDS YP_001559821.1 160880853 5743014 complement(3307916..3308683) 1 NC_010001.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 3308683 5743014 Cphy_2721 Clostridium phytofermentans ISDg transcriptional repressor CodY YP_001559821.1 3307916 R 357809 CDS YP_001559822.1 160880854 5743015 complement(3309011..3311083) 1 NC_010001.1 KEGG: ckl:CKL_1415 hypothetical protein; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase I 3311083 5743015 Cphy_2722 Clostridium phytofermentans ISDg DNA topoisomerase I YP_001559822.1 3309011 R 357809 CDS YP_001559823.1 160880855 5743016 complement(3312080..3313189) 1 NC_010001.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: gme:Gmet_0890 smf protein; DNA protecting protein DprA 3313189 5743016 Cphy_2723 Clostridium phytofermentans ISDg DNA protecting protein DprA YP_001559823.1 3312080 R 357809 CDS YP_001559824.1 160880856 5743017 complement(3313190..3314728) 1 NC_010001.1 KEGG: tte:TTE1455 predicted ATPase with chaperone activity; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase; Mg chelatase subunit ChlI 3314728 5743017 Cphy_2724 Clostridium phytofermentans ISDg Mg chelatase subunit ChlI YP_001559824.1 3313190 R 357809 CDS YP_001559825.1 160880857 5743018 complement(3315035..3315496) 1 NC_010001.1 PFAM: ATP-cone domain protein; KEGG: cth:Cthe_0450 ribonucleotide reductase regulator NrdR-like protein; transcriptional regulator NrdR 3315496 nrdR 5743018 nrdR Clostridium phytofermentans ISDg transcriptional regulator NrdR YP_001559825.1 3315035 R 357809 CDS YP_001559826.1 160880858 5743019 3315647..3315907 1 NC_010001.1 TIGRFAM: sporulation protein, YlmC/YmxH family; KEGG: cth:Cthe_0449 hypothetical protein; YlmC/YmxH family sporulation protein 3315907 5743019 Cphy_2726 Clostridium phytofermentans ISDg YlmC/YmxH family sporulation protein YP_001559826.1 3315647 D 357809 CDS YP_001559827.1 160880859 5743020 3316130..3317332 1 NC_010001.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: dsy:DSY4185 hypothetical protein; DNA-directed DNA polymerase 3317332 5743020 Cphy_2727 Clostridium phytofermentans ISDg DNA-directed DNA polymerase YP_001559827.1 3316130 D 357809 CDS YP_001559828.1 160880860 5743021 complement(3317574..3318878) 1 NC_010001.1 KEGG: ckl:CKL_2277 predicted transposase; transposase 3318878 5743021 Cphy_2728 Clostridium phytofermentans ISDg transposase YP_001559828.1 3317574 R 357809 CDS YP_001559829.1 160880861 5743022 complement(3319172..3320017) 1 NC_010001.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cbe:Cbei_0450 xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 3320017 5743022 Cphy_2729 Clostridium phytofermentans ISDg xylose isomerase domain-containing protein YP_001559829.1 3319172 R 357809 CDS YP_001559830.1 160880862 5743023 complement(3320156..3320980) 1 NC_010001.1 PFAM: polysaccharide deacetylase; KEGG: cac:CAC0358 predicted xylanase/chitin deacetylase; polysaccharide deacetylase 3320980 5743023 Cphy_2730 Clostridium phytofermentans ISDg polysaccharide deacetylase YP_001559830.1 3320156 R 357809 CDS YP_001559831.1 160880863 5743024 complement(3321178..3322029) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpu:BPUM_2666 ABC superfamily ATP binding cassette transporter, membrane protein; binding-protein-dependent transport systems inner membrane component 3322029 5743024 Cphy_2731 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001559831.1 3321178 R 357809 CDS YP_001559832.1 160880864 5743025 complement(3322042..3322992) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2531 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3322992 5743025 Cphy_2732 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001559832.1 3322042 R 357809 CDS YP_001559833.1 160880865 5743026 complement(3323144..3324745) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3316 extracellular solute-binding protein, family 1; extracellular solute-binding protein 3324745 5743026 Cphy_2733 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001559833.1 3323144 R 357809 CDS YP_001559834.1 160880866 5742049 3325192..3327486 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_4431 response regulator receiver protein; AraC family transcriptional regulator 3327486 5742049 Cphy_2734 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001559834.1 3325192 D 357809 CDS YP_001559835.1 160880867 5742050 3327576..3328295 1 NC_010001.1 PFAM: lipolytic protein G-D-S-L family; KEGG: bld:BLi04100 hypothetical protein; GDSL family lipase 3328295 5742050 Cphy_2735 Clostridium phytofermentans ISDg GDSL family lipase YP_001559835.1 3327576 D 357809 CDS YP_001559836.1 160880868 5742051 complement(3328548..3330104) 1 NC_010001.1 PFAM: glycoside hydrolase family 28; KEGG: amt:Amet_0899 glycoside hydrolase, family 28; glycoside hydrolase family protein 3330104 5742051 Cphy_2736 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001559836.1 3328548 R 357809 CDS YP_001559837.1 160880869 5742052 complement(3330194..3331078) 1 NC_010001.1 PFAM: glycosyl hydrolase family 88; KEGG: amt:Amet_0895 glycosyl hydrolase, family 88; glycosyl hydrolase family protein 3331078 5742052 Cphy_2737 Clostridium phytofermentans ISDg glycosyl hydrolase family protein YP_001559837.1 3330194 R 357809 CDS YP_001559838.1 160880870 5742053 complement(3331208..3332038) 1 NC_010001.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 3332038 5742053 Cphy_2738 Clostridium phytofermentans ISDg 5-keto-4-deoxyuronate isomerase YP_001559838.1 3331208 R 357809 CDS YP_001559839.1 160880871 5742054 complement(3332329..3333360) 1 NC_010001.1 PFAM: PfkB domain protein; KEGG: bth:BT_0488 2-dehydro-3-deoxygluconokinase; ribokinase-like domain-containing protein 3333360 5742054 Cphy_2739 Clostridium phytofermentans ISDg ribokinase-like domain-containing protein YP_001559839.1 3332329 R 357809 CDS YP_001559840.1 160880872 5742055 complement(3333646..3335127) 1 NC_010001.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: bth:BT_0486 altronate hydrolase; altronate dehydratase 3335127 5742055 Cphy_2740 Clostridium phytofermentans ISDg altronate dehydratase YP_001559840.1 3333646 R 357809 CDS YP_001559841.1 160880873 5742056 complement(3335217..3336674) 1 NC_010001.1 catalyzes the formation of D-tagaturonate from D-altronate; altronate oxidoreductase 3336674 5742056 Cphy_2741 Clostridium phytofermentans ISDg altronate oxidoreductase YP_001559841.1 3335217 R 357809 CDS YP_001559842.1 160880874 5742057 3337192..3338193 1 NC_010001.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: yen:YE1255 regulatory protein; LacI family transcriptional regulator 3338193 5742057 Cphy_2742 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001559842.1 3337192 D 357809 CDS YP_001559843.1 160880875 5742058 3338265..3339665 1 NC_010001.1 PFAM: Glucuronate isomerase; KEGG: cbe:Cbei_1832 glucuronate isomerase; glucuronate isomerase 3339665 5742058 Cphy_2743 Clostridium phytofermentans ISDg glucuronate isomerase YP_001559843.1 3338265 D 357809 CDS YP_001559844.1 160880876 5742059 complement(3339865..3340653) 1 NC_010001.1 KEGG: ret:RHE_PF00314 hypothetical protein; hypothetical protein 3340653 5742059 Cphy_2744 Clostridium phytofermentans ISDg hypothetical protein YP_001559844.1 3339865 R 357809 CDS YP_001559845.1 160880877 5742060 3341185..3341541 1 NC_010001.1 hypothetical protein 3341541 5742060 Cphy_2745 Clostridium phytofermentans ISDg hypothetical protein YP_001559845.1 3341185 D 357809 CDS YP_001559846.1 160880878 5742061 3341607..3342143 1 NC_010001.1 hypothetical protein 3342143 5742061 Cphy_2746 Clostridium phytofermentans ISDg hypothetical protein YP_001559846.1 3341607 D 357809 CDS YP_001559847.1 160880879 5742062 3342200..3342733 1 NC_010001.1 hypothetical protein 3342733 5742062 Cphy_2747 Clostridium phytofermentans ISDg hypothetical protein YP_001559847.1 3342200 D 357809 CDS YP_001559848.1 160880880 5742064 3344792..3345199 1 NC_010001.1 hypothetical protein 3345199 5742064 Cphy_2749 Clostridium phytofermentans ISDg hypothetical protein YP_001559848.1 3344792 D 357809 CDS YP_001559849.1 160880881 5742065 3345346..3346269 1 NC_010001.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 3346269 pyrB 5742065 pyrB Clostridium phytofermentans ISDg aspartate carbamoyltransferase YP_001559849.1 3345346 D 357809 CDS YP_001559850.1 160880882 5742066 3346340..3346771 1 NC_010001.1 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase 3346771 5742066 Cphy_2751 Clostridium phytofermentans ISDg aspartate carbamoyltransferase YP_001559850.1 3346340 D 357809 CDS YP_001559851.1 160880883 5742067 complement(3346994..3348664) 1 NC_010001.1 PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: dsy:DSY0205 hypothetical protein; formate--tetrahydrofolate ligase 3348664 5742067 Cphy_2752 Clostridium phytofermentans ISDg formate--tetrahydrofolate ligase YP_001559851.1 3346994 R 357809 CDS YP_001559852.1 160880884 5742068 complement(3349219..3350082) 1 NC_010001.1 PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: oih:OB2060 hypothetical protein; RimK domain-containing protein ATP-grasp 3350082 5742068 Cphy_2753 Clostridium phytofermentans ISDg RimK domain-containing protein ATP-grasp YP_001559852.1 3349219 R 357809 CDS YP_001559853.1 160880885 5742069 complement(3350076..3350975) 1 NC_010001.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: oih:OB2059 hypothetical conserved protein; alpha-L-glutamate ligase 3350975 5742069 Cphy_2754 Clostridium phytofermentans ISDg alpha-L-glutamate ligase YP_001559853.1 3350076 R 357809 CDS YP_001559854.1 160880886 5742070 3351404..3352327 1 NC_010001.1 hypothetical protein 3352327 5742070 Cphy_2755 Clostridium phytofermentans ISDg hypothetical protein YP_001559854.1 3351404 D 357809 CDS YP_001559855.1 160880887 5742071 3352638..3353135 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_03105 histone acetyltransferase HPA2/related acetyltransferase; N-acetyltransferase GCN5 3353135 5742071 Cphy_2756 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001559855.1 3352638 D 357809 CDS YP_001559856.1 160880888 5742072 complement(3353395..3356235) 1 NC_010001.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: cth:Cthe_3039 cell divisionFtsK/SpoIIIE; cell division protein FtsK 3356235 5742072 Cphy_2757 Clostridium phytofermentans ISDg cell division protein FtsK YP_001559856.1 3353395 R 357809 CDS YP_001559857.1 160880889 5742073 complement(3356416..3357237) 1 NC_010001.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 3357237 5742073 Cphy_2758 Clostridium phytofermentans ISDg undecaprenyl pyrophosphate phosphatase YP_001559857.1 3356416 R 357809 CDS YP_001559858.1 160880890 5742074 complement(3357417..3358367) 1 NC_010001.1 PFAM: peptidase S14 ClpP; KEGG: cth:Cthe_1097 peptidase S14, ClpP; peptidase S14 ClpP 3358367 5742074 Cphy_2759 Clostridium phytofermentans ISDg peptidase S14 ClpP YP_001559858.1 3357417 R 357809 CDS YP_001559859.1 160880891 5742075 complement(3358910..3360187) 1 NC_010001.1 KEGG: bfs:BF3351 cysteine biosynthesis related protein; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-acetylhomoserine/O-acetylserine sulfhydrylase 3360187 5742075 Cphy_2760 Clostridium phytofermentans ISDg O-acetylhomoserine/O-acetylserine sulfhydrylase YP_001559859.1 3358910 R 357809 CDS YP_001559860.1 160880892 5742076 complement(3360353..3361723) 1 NC_010001.1 PFAM: peptidase M16 domain protein; KEGG: cth:Cthe_0419 peptidase M16-like protein; peptidase M16 domain-containing protein 3361723 5742076 Cphy_2761 Clostridium phytofermentans ISDg peptidase M16 domain-containing protein YP_001559860.1 3360353 R 357809 CDS YP_001559861.1 160880893 5742077 complement(3361898..3362767) 1 NC_010001.1 PFAM: sugar-specific permease EIIA 1 domain; KEGG: lpl:lp_3229 beta-glucosides PTS, EIIBCA; sugar-specific permease EIIA 3362767 5742077 Cphy_2762 Clostridium phytofermentans ISDg sugar-specific permease EIIA YP_001559861.1 3361898 R 357809 CDS YP_001559862.1 160880894 5742078 complement(3362998..3365094) 1 NC_010001.1 KEGG: cth:Cthe_0418 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase 3365094 5742078 Cphy_2763 Clostridium phytofermentans ISDg polynucleotide phosphorylase YP_001559862.1 3362998 R 357809 CDS YP_001559863.1 160880895 5742079 complement(3365704..3366978) 1 NC_010001.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cth:Cthe_1384 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 3366978 5742079 Cphy_2764 Clostridium phytofermentans ISDg bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_001559863.1 3365704 R 357809 CDS YP_001559864.1 160880896 5742080 complement(3367216..3367779) 1 NC_010001.1 KEGG: ctc:CTC01689 hypothetical protein; hypothetical protein 3367779 5742080 Cphy_2765 Clostridium phytofermentans ISDg hypothetical protein YP_001559864.1 3367216 R 357809 CDS YP_001559865.1 160880897 5742081 complement(3368015..3369376) 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_1419 MATE efflux family protein; MATE efflux family protein 3369376 5742081 Cphy_2766 Clostridium phytofermentans ISDg MATE efflux family protein YP_001559865.1 3368015 R 357809 CDS YP_001559866.1 160880898 5742082 complement(3369633..3369899) 1 NC_010001.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 3369899 rpsO 5742082 rpsO Clostridium phytofermentans ISDg 30S ribosomal protein S15 YP_001559866.1 3369633 R 357809 CDS YP_001559867.1 160880899 5742083 complement(3370084..3371748) 1 NC_010001.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: cno:NT01CX_1154 Na/Pi cotransporter family protein; Na/Pi-cotransporter II-related protein 3371748 5742083 Cphy_2768 Clostridium phytofermentans ISDg Na/Pi-cotransporter II-related protein YP_001559867.1 3370084 R 357809 CDS YP_001559868.1 160880900 5742084 complement(3372248..3373639) 1 NC_010001.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bce:BC0583 transcriptional regulator, GntR family / aminotransferase class-I; transcriptional regulator 3373639 5742084 Cphy_2769 Clostridium phytofermentans ISDg transcriptional regulator YP_001559868.1 3372248 R 357809 CDS YP_001559869.1 160880901 5742085 complement(3373608..3374561) 1 NC_010001.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: cth:Cthe_0987 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF 3374561 5742085 Cphy_2770 Clostridium phytofermentans ISDg riboflavin biosynthesis protein RibF YP_001559869.1 3373608 R 357809 CDS YP_001559870.1 160880902 5742086 complement(3374689..3375612) 1 NC_010001.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: cth:Cthe_0988 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B 3375612 5742086 Cphy_2771 Clostridium phytofermentans ISDg tRNA pseudouridine synthase B YP_001559870.1 3374689 R 357809 CDS YP_001559871.1 160880903 5742087 complement(3375687..3376661) 1 NC_010001.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cbe:Cbei_1204 phosphoesterase, RecJ domain protein; phosphoesterase domain-containing protein 3376661 5742087 Cphy_2772 Clostridium phytofermentans ISDg phosphoesterase domain-containing protein YP_001559871.1 3375687 R 357809 CDS YP_001559872.1 160880904 5742088 complement(3376673..3377083) 1 NC_010001.1 PFAM: ribosome-binding factor A; KEGG: tte:TTE1392 ribosome-binding factor A; ribosome-binding factor A 3377083 5742088 Cphy_2773 Clostridium phytofermentans ISDg ribosome-binding factor A YP_001559872.1 3376673 R 357809 CDS YP_001559873.1 160880905 5742089 complement(3377233..3380628) 1 NC_010001.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Miro domain protein; KEGG: dsy:DSY2517 hypothetical protein; translation initiation factor IF-2 3380628 5742089 Cphy_2774 Clostridium phytofermentans ISDg translation initiation factor IF-2 YP_001559873.1 3377233 R 357809 CDS YP_001559874.1 160880906 5742090 complement(3380672..3381019) 1 NC_010001.1 PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: cdf:CD1308 ribosomal protein; ribosomal protein L7Ae/L30e/S12e/Gadd45 3381019 5742090 Cphy_2775 Clostridium phytofermentans ISDg ribosomal protein L7Ae/L30e/S12e/Gadd45 YP_001559874.1 3380672 R 357809 CDS YP_001559875.1 160880907 5742091 complement(3381012..3381287) 1 NC_010001.1 PFAM: protein of unknown function DUF448; KEGG: cbe:Cbei_1200 protein of unknown function DUF448; hypothetical protein 3381287 5742091 Cphy_2776 Clostridium phytofermentans ISDg hypothetical protein YP_001559875.1 3381012 R 357809 CDS YP_001559876.1 160880908 5742092 complement(3381314..3382378) 1 NC_010001.1 TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; NusA domain protein; KEGG: tte:TTE1396 transcription terminator; NusA antitermination factor 3382378 5742092 Cphy_2777 Clostridium phytofermentans ISDg NusA antitermination factor YP_001559876.1 3381314 R 357809 CDS YP_001559877.1 160880909 5742093 complement(3382401..3382868) 1 NC_010001.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 3382868 5742093 Cphy_2778 Clostridium phytofermentans ISDg hypothetical protein YP_001559877.1 3382401 R 357809 CDS YP_001559878.1 160880910 5742094 complement(3383099..3384076) 1 NC_010001.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; KEGG: cpf:CPF_0664 BirA bifunctional protein; biotin--acetyl-CoA-carboxylase ligase 3384076 5742094 Cphy_2779 Clostridium phytofermentans ISDg biotin--acetyl-CoA-carboxylase ligase YP_001559878.1 3383099 R 357809 CDS YP_001559879.1 160880911 5742095 complement(3384516..3384896) 1 NC_010001.1 PFAM: Rubrerythrin; KEGG: cdf:CD2845 rubrerythrin; rubrerythrin 3384896 5742095 Cphy_2780 Clostridium phytofermentans ISDg rubrerythrin YP_001559879.1 3384516 R 357809 CDS YP_001559880.1 160880912 5742096 complement(3385149..3387422) 1 NC_010001.1 hypothetical protein 3387422 5742096 Cphy_2781 Clostridium phytofermentans ISDg hypothetical protein YP_001559880.1 3385149 R 357809 CDS YP_001559881.1 160880913 5742097 complement(3387993..3389303) 1 NC_010001.1 TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: cth:Cthe_2889 phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP diphosphatase 3389303 5742097 Cphy_2782 Clostridium phytofermentans ISDg phosphoribosyl-ATP diphosphatase YP_001559881.1 3387993 R 357809 CDS YP_001559882.1 160880914 5742098 complement(3389384..3390103) 1 NC_010001.1 KEGG: cth:Cthe_2887 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 3390103 5742098 Cphy_2783 Clostridium phytofermentans ISDg phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_001559882.1 3389384 R 357809 CDS YP_001559883.1 160880915 5742099 complement(3390140..3390730) 1 NC_010001.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: cth:Cthe_2884 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 3390730 5742099 Cphy_2784 Clostridium phytofermentans ISDg imidazoleglycerol-phosphate dehydratase YP_001559883.1 3390140 R 357809 CDS YP_001559884.1 160880916 5742100 complement(3390821..3392134) 1 NC_010001.1 PFAM: histidinol dehydrogenase; KEGG: cth:Cthe_2882 histidinol dehydrogenase; histidinol dehydrogenase 3392134 5742100 Cphy_2785 Clostridium phytofermentans ISDg histidinol dehydrogenase YP_001559884.1 3390821 R 357809 CDS YP_001559885.1 160880917 5742101 complement(3392200..3392847) 1 NC_010001.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase 3392847 hisG 5742101 hisG Clostridium phytofermentans ISDg ATP phosphoribosyltransferase YP_001559885.1 3392200 R 357809 CDS YP_001559886.1 160880918 5742102 complement(3392857..3394113) 1 NC_010001.1 PFAM: tRNA synthetase class II (G H P and S); KEGG: cth:Cthe_2880 histidyl-tRNA synthetase; histidine--tRNA ligase 3394113 5742102 Cphy_2787 Clostridium phytofermentans ISDg histidine--tRNA ligase YP_001559886.1 3392857 R 357809 CDS YP_001559887.1 160880919 5742103 complement(3394280..3394816) 1 NC_010001.1 PFAM: Recombination protein U; KEGG: gka:GK2167 recombination protein U (penicillin-binding protein related factor A); recombination protein U 3394816 5742103 Cphy_2788 Clostridium phytofermentans ISDg recombination protein U YP_001559887.1 3394280 R 357809 CDS YP_001559888.1 160880920 5742104 complement(3394840..3395880) 1 NC_010001.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cpf:CPF_1414 pseudouridine synthase, RluA family; RluA family pseudouridine synthase 3395880 5742104 Cphy_2789 Clostridium phytofermentans ISDg RluA family pseudouridine synthase YP_001559888.1 3394840 R 357809 CDS YP_001559889.1 160880921 5742105 complement(3395915..3396586) 1 NC_010001.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tva:TVAG_463690 haloacid dehalogenase-like hydrolase family protein Pfam: Hydrolase; HAD family hydrolase 3396586 5742105 Cphy_2790 Clostridium phytofermentans ISDg HAD family hydrolase YP_001559889.1 3395915 R 357809 CDS YP_001559890.1 160880922 5742106 complement(3396694..3397416) 1 NC_010001.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: lmo:lmo2342 pseudouridylate synthase; pseudouridine synthase 3397416 5742106 Cphy_2791 Clostridium phytofermentans ISDg pseudouridine synthase YP_001559890.1 3396694 R 357809 CDS YP_001559891.1 160880923 5742107 complement(3397438..3398904) 1 NC_010001.1 PFAM: Fmu (Sun) domain protein; KEGG: cth:Cthe_3160 RNA methylase, NOL1/NOP2/sun family; Fmu (Sun) domain-containing protein 3398904 5742107 Cphy_2792 Clostridium phytofermentans ISDg Fmu (Sun) domain-containing protein YP_001559891.1 3397438 R 357809 CDS YP_001559892.1 160880924 5742108 complement(3398988..3399791) 1 NC_010001.1 PFAM: RelA/SpoT domain protein; KEGG: amt:Amet_3678 RelA/SpoT domain protein; RelA/SpoT domain-containing protein 3399791 5742108 Cphy_2793 Clostridium phytofermentans ISDg RelA/SpoT domain-containing protein YP_001559892.1 3398988 R 357809 CDS YP_001559893.1 160880925 5742109 complement(3399814..3401244) 1 NC_010001.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cno:NT01CX_0361 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator 3401244 5742109 Cphy_2794 Clostridium phytofermentans ISDg cell envelope-related transcriptional attenuator YP_001559893.1 3399814 R 357809 CDS YP_001559894.1 160880926 5742110 complement(3401614..3402888) 1 NC_010001.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cpr:CPR_0598 cell envelope-related transcriptional attenuator domain family; cell envelope-related transcriptional attenuator 3402888 5742110 Cphy_2795 Clostridium phytofermentans ISDg cell envelope-related transcriptional attenuator YP_001559894.1 3401614 R 357809 CDS YP_001559895.1 160880927 5742111 complement(3403224..3404684) 1 NC_010001.1 KEGG: cpe:CPE2148 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase 3404684 5742111 Cphy_2796 Clostridium phytofermentans ISDg aminoacyl-histidine dipeptidase YP_001559895.1 3403224 R 357809 CDS YP_001559896.1 160880928 5742112 complement(3404792..3406156) 1 NC_010001.1 PFAM: protein of unknown function DUF711; KEGG: mla:Mlab_1030 hypothetical protein; hypothetical protein 3406156 5742112 Cphy_2797 Clostridium phytofermentans ISDg hypothetical protein YP_001559896.1 3404792 R 357809 CDS YP_001559897.1 160880929 5742113 complement(3406175..3406447) 1 NC_010001.1 ACT domain-containing protein; hypothetical protein 3406447 5742113 Cphy_2798 Clostridium phytofermentans ISDg hypothetical protein YP_001559897.1 3406175 R 357809 CDS YP_001559898.1 160880930 5742114 complement(3406583..3407377) 1 NC_010001.1 PFAM: beta-lactamase domain protein; KEGG: cdf:CD3651 metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein 3407377 5742114 Cphy_2799 Clostridium phytofermentans ISDg beta-lactamase domain-containing protein YP_001559898.1 3406583 R 357809 CDS YP_001559899.1 160880931 5742115 complement(3407493..3409214) 1 NC_010001.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: cth:Cthe_1282 diguanylate cyclase with GAF sensor; GAF sensor-containing diguanylate cyclase 3409214 5742115 Cphy_2800 Clostridium phytofermentans ISDg GAF sensor-containing diguanylate cyclase YP_001559899.1 3407493 R 357809 CDS YP_001559900.1 160880932 5742116 complement(3409247..3411358) 1 NC_010001.1 KEGG: ctc:CTC00985 cell division protein FtsA; cell division protein FtsA 3411358 5742116 Cphy_2801 Clostridium phytofermentans ISDg cell division protein FtsA YP_001559900.1 3409247 R 357809 CDS YP_001559901.1 160880933 5742117 complement(3411739..3412359) 1 NC_010001.1 KEGG: tte:TTE0875 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 3412359 5742117 Cphy_2802 Clostridium phytofermentans ISDg dephospho-CoA kinase YP_001559901.1 3411739 R 357809 CDS YP_001559902.1 160880934 5742118 complement(3412480..3415464) 1 NC_010001.1 KEGG: cth:Cthe_0886 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I 3415464 5742118 Cphy_2803 Clostridium phytofermentans ISDg DNA polymerase I YP_001559902.1 3412480 R 357809 CDS YP_001559903.1 160880935 5742119 complement(3415541..3416119) 1 NC_010001.1 hypothetical protein 3416119 5742119 Cphy_2804 Clostridium phytofermentans ISDg hypothetical protein YP_001559903.1 3415541 R 357809 CDS YP_001559904.1 160880936 5742121 complement(3417680..3418021) 1 NC_010001.1 KEGG: dme:Dmel_CG2839 CG2839; hypothetical protein 3418021 5742121 Cphy_2805 Clostridium phytofermentans ISDg hypothetical protein YP_001559904.1 3417680 R 357809 CDS YP_001559905.1 160880937 5742122 3419249..3419596 1 NC_010001.1 KEGG: cbf:CLI_0985 hypothetical protein; hypothetical protein 3419596 5742122 Cphy_2806 Clostridium phytofermentans ISDg hypothetical protein YP_001559905.1 3419249 D 357809 CDS YP_001559906.1 160880938 5742123 complement(3420322..3421581) 1 NC_010001.1 PFAM: glycosyl transferase family 2; KEGG: chy:CHY_0980 glycosyl transferase, group 2 family; glycosyl transferase family protein 3421581 5742123 Cphy_2807 Clostridium phytofermentans ISDg glycosyl transferase family protein YP_001559906.1 3420322 R 357809 CDS YP_001559907.1 160880939 5742124 complement(3421710..3422930) 1 NC_010001.1 KEGG: ctc:CTC00440 alpha-clostripain-like protein; alpha-clostripain-like protein 3422930 5742124 Cphy_2808 Clostridium phytofermentans ISDg alpha-clostripain-like protein YP_001559907.1 3421710 R 357809 CDS YP_001559908.1 160880940 5742125 complement(3423037..3429723) 1 NC_010001.1 KEGG: bps:BPSS1434 membrane-anchored cell surface protein; chromosome segregation ATPase-like protein 3429723 5742125 Cphy_2809 Clostridium phytofermentans ISDg chromosome segregation ATPase-like protein YP_001559908.1 3423037 R 357809 CDS YP_001559909.1 160880941 5742126 complement(3429863..3430933) 1 NC_010001.1 PFAM: glycosyl transferase family 2; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: amt:Amet_3406 glycosyl transferase, family 2; glycosyl transferase family protein 3430933 5742126 Cphy_2810 Clostridium phytofermentans ISDg glycosyl transferase family protein YP_001559909.1 3429863 R 357809 CDS YP_001559910.1 160880942 5742127 complement(3430994..3433558) 1 NC_010001.1 PFAM: glycosyl transferase group 1; TPR repeat-containing protein; KEGG: dsy:DSY4437 hypothetical protein; group 1 glycosyl transferase 3433558 5742127 Cphy_2811 Clostridium phytofermentans ISDg group 1 glycosyl transferase YP_001559910.1 3430994 R 357809 CDS YP_001559911.1 160880943 5742128 complement(3433803..3434108) 1 NC_010001.1 hypothetical protein 3434108 5742128 Cphy_2812 Clostridium phytofermentans ISDg hypothetical protein YP_001559911.1 3433803 R 357809 CDS YP_001559912.1 160880944 5742129 complement(3434217..3435191) 1 NC_010001.1 PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_C1281 glycosyl transferase; group 1 glycosyl transferase 3435191 5742129 Cphy_2813 Clostridium phytofermentans ISDg group 1 glycosyl transferase YP_001559912.1 3434217 R 357809 CDS YP_001559913.1 160880945 5742130 complement(3435346..3436719) 1 NC_010001.1 PFAM: glycosyl transferase family 2; Methyltransferase type 11; Methyltransferase type 12; KEGG: cbe:Cbei_2586 glycosyl transferase, family 2; glycosyl transferase family protein 3436719 5742130 Cphy_2814 Clostridium phytofermentans ISDg glycosyl transferase family protein YP_001559913.1 3435346 R 357809 CDS YP_001559914.1 160880946 5742131 3437022..3437582 1 NC_010001.1 PFAM: Rubrerythrin; KEGG: cac:CAC3002 uncharacterized consrved protein, YHJR B.subtilis family; rubrerythrin 3437582 5742131 Cphy_2815 Clostridium phytofermentans ISDg rubrerythrin YP_001559914.1 3437022 D 357809 CDS YP_001559915.1 160880947 5742132 3437827..3438198 1 NC_010001.1 KEGG: cbf:CLI_0985 hypothetical protein; hypothetical protein 3438198 5742132 Cphy_2816 Clostridium phytofermentans ISDg hypothetical protein YP_001559915.1 3437827 D 357809 CDS YP_001559916.1 160880948 5742133 3438599..3440215 1 NC_010001.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpf:CPF_2886 serine protease C; peptidase S8/S53 subtilisin kexin sedolisin 3440215 5742133 Cphy_2817 Clostridium phytofermentans ISDg peptidase S8/S53 subtilisin kexin sedolisin YP_001559916.1 3438599 D 357809 CDS YP_001559917.1 160880949 5742134 3440301..3440876 1 NC_010001.1 PFAM: cell wall hydrolase/autolysin; KEGG: tte:TTE2424 N-acetylmuramoyl-L-alanine amidase; cell wall hydrolase/autolysin 3440876 5742134 Cphy_2818 Clostridium phytofermentans ISDg cell wall hydrolase/autolysin YP_001559917.1 3440301 D 357809 CDS YP_001559918.1 160880950 5742135 complement(3441069..3441824) 1 NC_010001.1 PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: tte:TTE1266 leader peptidase (prepilin peptidase) / N-methyltransferase; peptidase A24A domain-containing protein 3441824 5742135 Cphy_2819 Clostridium phytofermentans ISDg peptidase A24A domain-containing protein YP_001559918.1 3441069 R 357809 CDS YP_001559919.1 160880951 5742136 complement(3441936..3442688) 1 NC_010001.1 KEGG: spi:MGAS10750_Spy0312 pyruvate formate-lyase activating enzyme; TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein; pyruvate formate-lyase activating enzyme 3442688 5742136 Cphy_2820 Clostridium phytofermentans ISDg pyruvate formate-lyase activating enzyme YP_001559919.1 3441936 R 357809 CDS YP_001559920.1 160880952 5742137 complement(3443075..3443323) 1 NC_010001.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA 3443323 5742137 Cphy_2821 Clostridium phytofermentans ISDg autonomous glycyl radical cofactor GrcA YP_001559920.1 3443075 R 357809 CDS YP_001559921.1 160880953 5742138 complement(3443422..3443625) 1 NC_010001.1 hypothetical protein 3443625 5742138 Cphy_2822 Clostridium phytofermentans ISDg hypothetical protein YP_001559921.1 3443422 R 357809 CDS YP_001559922.1 160880954 5742139 complement(3443643..3445703) 1 NC_010001.1 KEGG: bcy:Bcer98_0431 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate acetyltransferase 3445703 5742139 Cphy_2823 Clostridium phytofermentans ISDg formate acetyltransferase YP_001559922.1 3443643 R 357809 CDS YP_001559923.1 160880955 5742140 3446378..3447856 1 NC_010001.1 PFAM: Domain of unknown function DUF1846; KEGG: spm:spyM18_1356 hypothetical protein; hypothetical protein 3447856 5742140 Cphy_2824 Clostridium phytofermentans ISDg hypothetical protein YP_001559923.1 3446378 D 357809 CDS YP_001559924.1 160880956 5742141 3448203..3449975 1 NC_010001.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: cth:Cthe_2810 Na/Pi-cotransporter II-related protein; Na/Pi-cotransporter II-related protein 3449975 5742141 Cphy_2825 Clostridium phytofermentans ISDg Na/Pi-cotransporter II-related protein YP_001559924.1 3448203 D 357809 CDS YP_001559925.1 160880957 5742142 complement(3450089..3451450) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cth:Cthe_1599 multi-sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3451450 5742142 Cphy_2826 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001559925.1 3450089 R 357809 CDS YP_001559926.1 160880958 5742143 complement(3451469..3452161) 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1600 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3452161 5742143 Cphy_2827 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001559926.1 3451469 R 357809 CDS YP_001559927.1 160880959 5742144 complement(3452176..3452835) 1 NC_010001.1 KEGG: ctc:CTC00912 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 3452835 5742144 Cphy_2828 Clostridium phytofermentans ISDg metal dependent phosphohydrolase YP_001559927.1 3452176 R 357809 CDS YP_001559928.1 160880960 5742145 complement(3452999..3454402) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sus:Acid_6283 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3454402 5742145 Cphy_2829 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001559928.1 3452999 R 357809 CDS YP_001559929.1 160880961 5742146 complement(3454422..3455084) 1 NC_010001.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: cth:Cthe_1601 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU 3455084 5742146 Cphy_2830 Clostridium phytofermentans ISDg phosphate uptake regulator PhoU YP_001559929.1 3454422 R 357809 CDS YP_001559930.1 160880962 5742147 complement(3455286..3456044) 1 NC_010001.1 KEGG: mta:Moth_0114 phosphate transport system permease 1; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase 3456044 5742147 Cphy_2831 Clostridium phytofermentans ISDg phosphate ABC transporter ATPase YP_001559930.1 3455286 R 357809 CDS YP_001559931.1 160880963 5742148 complement(3456049..3456933) 1 NC_010001.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_0606 phosphate ABC transporter, permease; phosphate ABC transporter, inner membrane subunit PstA 3456933 5742148 Cphy_2832 Clostridium phytofermentans ISDg phosphate ABC transporter, inner membrane subunit PstA YP_001559931.1 3456049 R 357809 CDS YP_001559932.1 160880964 5742149 complement(3456957..3457922) 1 NC_010001.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VVA0370 ABC-type phosphate transport system, permease component; phosphate ABC transporter permease 3457922 5742149 Cphy_2833 Clostridium phytofermentans ISDg phosphate ABC transporter permease YP_001559932.1 3456957 R 357809 CDS YP_001559933.1 160880965 5742150 complement(3458169..3459092) 1 NC_010001.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: drm:Dred_2106 phosphate binding protein; phosphate binding protein 3459092 5742150 Cphy_2834 Clostridium phytofermentans ISDg phosphate binding protein YP_001559933.1 3458169 R 357809 CDS YP_001559934.1 160880966 5742151 complement(3459444..3461285) 1 NC_010001.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cdf:CD1476 signaling protein; diguanylate cyclase/phosphodiesterase 3461285 5742151 Cphy_2835 Clostridium phytofermentans ISDg diguanylate cyclase/phosphodiesterase YP_001559934.1 3459444 R 357809 CDS YP_001559935.1 160880967 5742152 complement(3461725..3463476) 1 NC_010001.1 PFAM: Peptidoglycan-binding LysM; KEGG: mtc:MT0291.4 hypothetical protein; peptidoglycan-binding LysM 3463476 5742152 Cphy_2836 Clostridium phytofermentans ISDg peptidoglycan-binding LysM YP_001559935.1 3461725 R 357809 CDS YP_001559936.1 160880968 5742153 3463755..3468050 1 NC_010001.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cth:Cthe_1329 CoA-substrate-specific enzyme activase; CoA-substrate-specific enzyme activase 3468050 5742153 Cphy_2837 Clostridium phytofermentans ISDg CoA-substrate-specific enzyme activase YP_001559936.1 3463755 D 357809 CDS YP_001559937.1 160880969 5742154 3468220..3470802 1 NC_010001.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: pth:PTH_0142 hypothetical protein; multi-sensor hybrid histidine kinase 3470802 5742154 Cphy_2838 Clostridium phytofermentans ISDg multi-sensor hybrid histidine kinase YP_001559937.1 3468220 D 357809 CDS YP_001559938.1 160880970 5742155 complement(3470925..3471602) 1 NC_010001.1 TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: gka:GK3421 uracil-DNA glycosylase; uracil-DNA glycosylase 3471602 5742155 Cphy_2839 Clostridium phytofermentans ISDg uracil-DNA glycosylase YP_001559938.1 3470925 R 357809 CDS YP_001559939.1 160880971 5742156 complement(3471604..3472380) 1 NC_010001.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 3472380 5742156 Cphy_2840 Clostridium phytofermentans ISDg imidazole glycerol phosphate synthase subunit HisF YP_001559939.1 3471604 R 357809 CDS YP_001559940.1 160880972 5742157 complement(3472389..3473003) 1 NC_010001.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 3473003 hisH 5742157 hisH Clostridium phytofermentans ISDg imidazole glycerol phosphate synthase subunit HisH YP_001559940.1 3472389 R 357809 CDS YP_001559941.1 160880973 5742158 complement(3473425..3475293) 1 NC_010001.1 KEGG: ehi:82.t00025 viral A-type inclusion protein repeat, Pfam: Nha1_C DUF148 ERM Prefoldin_2 WXG100 Vicilin_N TBPIP Myosin_tail_1 Filament YscO Bacillus_HBL EzrA DUF948 Rab5-bind Laminin_I MpPF2 Vps51 MSG Spectrin LMP PROSITE: GLU_RICH LYS_RICH; hypothetical protein 3475293 5742158 Cphy_2842 Clostridium phytofermentans ISDg hypothetical protein YP_001559941.1 3473425 R 357809 CDS YP_001559942.1 160880974 5742159 complement(3475326..3476234) 1 NC_010001.1 PFAM: response regulator receiver; CheW domain protein; KEGG: amt:Amet_2732 CheW protein; response regulator receiver modulated CheW protein 3476234 5742159 Cphy_2843 Clostridium phytofermentans ISDg response regulator receiver modulated CheW protein YP_001559942.1 3475326 R 357809 CDS YP_001559943.1 160880975 5742160 complement(3476824..3478206) 1 NC_010001.1 PFAM: aminotransferase class V; KEGG: cbe:Cbei_0585 cysteine desulfurase; cysteine desulfurase 3478206 5742160 Cphy_2844 Clostridium phytofermentans ISDg cysteine desulfurase YP_001559943.1 3476824 R 357809 CDS YP_001559944.1 160880976 5742165 3484852..3486042 1 NC_010001.1 KEGG: cbf:CLI_0727 hypothetical protein; hypothetical protein 3486042 5742165 Cphy_2845 Clostridium phytofermentans ISDg hypothetical protein YP_001559944.1 3484852 D 357809 CDS YP_001559945.1 160880977 5742166 3486359..3488224 1 NC_010001.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 3488224 5742166 Cphy_2846 Clostridium phytofermentans ISDg hydroxylamine reductase YP_001559945.1 3486359 D 357809 CDS YP_001559946.1 160880978 5742167 3488737..3490245 1 NC_010001.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 3490245 5742167 Cphy_2847 Clostridium phytofermentans ISDg 2-keto-3-deoxygluconate permease YP_001559946.1 3488737 D 357809 CDS YP_001559947.1 160880979 5742168 complement(3490641..3492104) 1 NC_010001.1 PFAM: glycoside hydrolase family 4; KEGG: csc:Csac_2748 glycoside hydrolase, family 4; glycoside hydrolase family protein 3492104 5742168 Cphy_2848 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001559947.1 3490641 R 357809 CDS YP_001559948.1 160880980 5742169 complement(3492314..3493177) 1 NC_010001.1 PFAM: NLP/P60 protein; KEGG: cno:NT01CX_2157 N-acetylmuramoyl-L-alanine amidase CwlL precursor (cellwall hydrolase) (autolysin); NLP/P60 protein 3493177 5742169 Cphy_2849 Clostridium phytofermentans ISDg NLP/P60 protein YP_001559948.1 3492314 R 357809 CDS YP_001559949.1 160880981 5742170 complement(3493177..3493494) 1 NC_010001.1 TIGRFAM: phage holin, LL-H family; PFAM: holin LL-H; KEGG: amt:Amet_2546 hypothetical protein; phage holin 3493494 5742170 Cphy_2850 Clostridium phytofermentans ISDg phage holin YP_001559949.1 3493177 R 357809 CDS YP_001559950.1 160880982 5745124 complement(3500321..3500605) 1 NC_010001.1 KEGG: cno:NT01CX_1180 hypothetical protein; hypothetical protein 3500605 5745124 Cphy_2851 Clostridium phytofermentans ISDg hypothetical protein YP_001559950.1 3500321 R 357809 CDS YP_001559951.1 160880983 5745125 complement(3500994..3501383) 1 NC_010001.1 hypothetical protein 3501383 5745125 Cphy_2852 Clostridium phytofermentans ISDg hypothetical protein YP_001559951.1 3500994 R 357809 CDS YP_001559952.1 160880984 5745126 complement(3501425..3502117) 1 NC_010001.1 hypothetical protein 3502117 5745126 Cphy_2853 Clostridium phytofermentans ISDg hypothetical protein YP_001559952.1 3501425 R 357809 CDS YP_001559953.1 160880985 5745127 complement(3502213..3503712) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cbe:Cbei_1732 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3503712 5745127 Cphy_2854 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001559953.1 3502213 R 357809 CDS YP_001559954.1 160880986 5745128 complement(3503712..3504386) 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbe:Cbei_1731 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3504386 5745128 Cphy_2855 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001559954.1 3503712 R 357809 CDS YP_001559955.1 160880987 5745129 complement(3504707..3505006) 1 NC_010001.1 hypothetical protein 3505006 5745129 Cphy_2856 Clostridium phytofermentans ISDg hypothetical protein YP_001559955.1 3504707 R 357809 CDS YP_001559956.1 160880988 5745130 complement(3505060..3505872) 1 NC_010001.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: lbr:LVIS_1174 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidylprolyl isomerase 3505872 5745130 Cphy_2857 Clostridium phytofermentans ISDg peptidylprolyl isomerase YP_001559956.1 3505060 R 357809 CDS YP_001559957.1 160880989 5745131 3506210..3506770 1 NC_010001.1 PFAM: thymidine kinase; KEGG: hdu:HD1473 thymidine kinase; thymidine kinase 3506770 5745131 Cphy_2858 Clostridium phytofermentans ISDg thymidine kinase YP_001559957.1 3506210 D 357809 CDS YP_001559958.1 160880990 5745133 3508472..3509422 1 NC_010001.1 PFAM: helix-turn-helix domain protein; KEGG: btk:BT9727_1061 probable transcriptional regulator; helix-turn-helix domain-containing protein 3509422 5745133 Cphy_2859 Clostridium phytofermentans ISDg helix-turn-helix domain-containing protein YP_001559958.1 3508472 D 357809 CDS YP_001559959.1 160880991 5745134 complement(3509560..3509970) 1 NC_010001.1 PFAM: response regulator receiver; KEGG: cdf:CD0533 chemotaxis protein; response regulator receiver protein 3509970 5745134 Cphy_2860 Clostridium phytofermentans ISDg response regulator receiver protein YP_001559959.1 3509560 R 357809 CDS YP_001559960.1 160880992 5745135 complement(3510427..3510669) 1 NC_010001.1 hypothetical protein 3510669 5745135 Cphy_2861 Clostridium phytofermentans ISDg hypothetical protein YP_001559960.1 3510427 R 357809 CDS YP_001559961.1 160880993 5745136 complement(3511058..3512362) 1 NC_010001.1 KEGG: cth:Cthe_1311 signal transduction histidine kinase regulating citrate/malate metabolism; signal transduction histidine kinase regulating citrate/malate metabolism 3512362 5745136 Cphy_2862 Clostridium phytofermentans ISDg signal transduction histidine kinase regulating citrate/malate metabolism YP_001559961.1 3511058 R 357809 CDS YP_001559962.1 160880994 5745137 3512763..3512966 1 NC_010001.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sae:NWMN_2605 cold shock protein CspB; cold-shock DNA-binding domain-containing protein 3512966 5745137 Cphy_2863 Clostridium phytofermentans ISDg cold-shock DNA-binding domain-containing protein YP_001559962.1 3512763 D 357809 CDS YP_001559963.1 160880995 5745138 complement(3513222..3514868) 1 NC_010001.1 catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 3514868 5745138 Cphy_2864 Clostridium phytofermentans ISDg manganese-dependent inorganic pyrophosphatase YP_001559963.1 3513222 R 357809 CDS YP_001559964.1 160880996 5745139 complement(3514882..3515346) 1 NC_010001.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: tte:TTE0985 tmRNA-binding protein; SsrA-binding protein 3515346 5745139 Cphy_2865 Clostridium phytofermentans ISDg SsrA-binding protein YP_001559964.1 3514882 R 357809 CDS YP_001559965.1 160880997 5745140 complement(3515369..3517519) 1 NC_010001.1 KEGG: ctc:CTC00384 exoribonuclease II; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein; ribonuclease R 3517519 5745140 Cphy_2866 Clostridium phytofermentans ISDg ribonuclease R YP_001559965.1 3515369 R 357809 CDS YP_001559966.1 160880998 5745141 complement(3518073..3518318) 1 NC_010001.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: csc:Csac_1317 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 3518318 5745141 Cphy_2867 Clostridium phytofermentans ISDg preprotein translocase subunit SecG YP_001559966.1 3518073 R 357809 CDS YP_001559967.1 160880999 5745142 complement(3518398..3519942) 1 NC_010001.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 3519942 5745142 Cphy_2868 Clostridium phytofermentans ISDg phosphoglyceromutase YP_001559967.1 3518398 R 357809 CDS YP_001559968.1 160881000 5745143 complement(3520215..3521570) 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cpf:CPF_1409 MATE efflux family protein; MATE efflux family protein 3521570 5745143 Cphy_2869 Clostridium phytofermentans ISDg MATE efflux family protein YP_001559968.1 3520215 R 357809 CDS YP_001559969.1 160881001 5745144 complement(3521814..3522695) 1 NC_010001.1 PFAM: protein of unknown function DUF6 transmembrane; sugar transport family protein; KEGG: cbh:CLC_0948 drug/metabolite transporter, DMT family; hypothetical protein 3522695 5745144 Cphy_2870 Clostridium phytofermentans ISDg hypothetical protein YP_001559969.1 3521814 R 357809 CDS YP_001559970.1 160881002 5745146 3525595..3526302 1 NC_010001.1 KEGG: tde:TDE2413 hypothetical protein; hypothetical protein 3526302 5745146 Cphy_2873 Clostridium phytofermentans ISDg hypothetical protein YP_001559970.1 3525595 D 357809 CDS YP_001559971.1 160881003 5745147 complement(3526472..3527218) 1 NC_010001.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 3527218 tpiA 5745147 tpiA Clostridium phytofermentans ISDg triosephosphate isomerase YP_001559971.1 3526472 R 357809 CDS YP_001559972.1 160881004 5745148 complement(3527355..3528548) 1 NC_010001.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3528548 pgk 5745148 pgk Clostridium phytofermentans ISDg phosphoglycerate kinase YP_001559972.1 3527355 R 357809 CDS YP_001559973.1 160881005 5745149 complement(3528731..3529741) 1 NC_010001.1 KEGG: fth:FTH_1121 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 3529741 5745149 Cphy_2876 Clostridium phytofermentans ISDg glyceraldehyde-3-phosphate dehydrogenase, type I YP_001559973.1 3528731 R 357809 CDS YP_001559974.1 160881006 5745150 complement(3530109..3530705) 1 NC_010001.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: ana:alr2975 signal peptidase I; signal peptidase I 3530705 5745150 Cphy_2877 Clostridium phytofermentans ISDg signal peptidase I YP_001559974.1 3530109 R 357809 CDS YP_001559975.1 160881007 5745151 complement(3530717..3531322) 1 NC_010001.1 KEGG: cbh:CLC_2291 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 3531322 5745151 Cphy_2878 Clostridium phytofermentans ISDg signal peptidase I YP_001559975.1 3530717 R 357809 CDS YP_001559976.1 160881008 5745152 complement(3531402..3531650) 1 NC_010001.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: amt:Amet_2789 DNA-directed RNA polymerase, omega subunit; DNA-directed RNA polymerase subunit omega 3531650 5745152 Cphy_2879 Clostridium phytofermentans ISDg DNA-directed RNA polymerase subunit omega YP_001559976.1 3531402 R 357809 CDS YP_001559977.1 160881009 5745153 complement(3531687..3531962) 1 NC_010001.1 PFAM: protein of unknown function DUF370; KEGG: bay:RBAM_015500 YlzA; hypothetical protein 3531962 5745153 Cphy_2880 Clostridium phytofermentans ISDg hypothetical protein YP_001559977.1 3531687 R 357809 CDS YP_001559978.1 160881010 5745154 complement(3531975..3532853) 1 NC_010001.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: cpr:CPR_1721 conserved hypothetical protein TIGR00255; hypothetical protein 3532853 5745154 Cphy_2881 Clostridium phytofermentans ISDg hypothetical protein YP_001559978.1 3531975 R 357809 CDS YP_001559979.1 160881011 5745155 complement(3533119..3534075) 1 NC_010001.1 KEGG: cbe:Cbei_2464 GTPase (G3E family)-like protein; G3E family GTPase-like protein 3534075 5745155 Cphy_2882 Clostridium phytofermentans ISDg G3E family GTPase-like protein YP_001559979.1 3533119 R 357809 CDS YP_001559980.1 160881012 5745156 complement(3534176..3535258) 1 NC_010001.1 PFAM: cobalamin synthesis protein P47K; KEGG: cbe:Cbei_2463 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K 3535258 5745156 Cphy_2883 Clostridium phytofermentans ISDg cobalamin synthesis protein P47K YP_001559980.1 3534176 R 357809 CDS YP_001559981.1 160881013 5745157 complement(3535606..3537504) 1 NC_010001.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cdf:CD1666 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3537504 5745157 Cphy_2884 Clostridium phytofermentans ISDg glycerophosphoryl diester phosphodiesterase YP_001559981.1 3535606 R 357809 CDS YP_001559982.1 160881014 5745158 complement(3537625..3538923) 1 NC_010001.1 PFAM: major facilitator superfamily MFS_1; KEGG: pab:PAB2174 hypothetical protein; major facilitator transporter 3538923 5745158 Cphy_2885 Clostridium phytofermentans ISDg major facilitator transporter YP_001559982.1 3537625 R 357809 CDS YP_001559983.1 160881015 5745159 complement(3539209..3541755) 1 NC_010001.1 KEGG: mba:Mbar_A0504 hypothetical protein; hypothetical protein 3541755 5745159 Cphy_2886 Clostridium phytofermentans ISDg hypothetical protein YP_001559983.1 3539209 R 357809 CDS YP_001559984.1 160881016 5745160 complement(3541987..3542730) 1 NC_010001.1 PFAM: glycosyl transferase family 2; KEGG: pth:PTH_1466 glycosyltransferases; glycosyl transferase family protein 3542730 5745160 Cphy_2887 Clostridium phytofermentans ISDg glycosyl transferase family protein YP_001559984.1 3541987 R 357809 CDS YP_001559985.1 160881017 5745161 complement(3542889..3543983) 1 NC_010001.1 KEGG: msi:Msm_1502 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; UDP-galactopyranose mutase 3543983 5745161 Cphy_2888 Clostridium phytofermentans ISDg UDP-galactopyranose mutase YP_001559985.1 3542889 R 357809 CDS YP_001559986.1 160881018 5745162 complement(3544001..3546097) 1 NC_010001.1 KEGG: cth:Cthe_2151 hypothetical protein; hypothetical protein 3546097 5745162 Cphy_2889 Clostridium phytofermentans ISDg hypothetical protein YP_001559986.1 3544001 R 357809 CDS YP_001559987.1 160881019 5745163 complement(3546243..3548279) 1 NC_010001.1 KEGG: amt:Amet_2770 ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecG 3548279 5745163 Cphy_2890 Clostridium phytofermentans ISDg ATP-dependent DNA helicase RecG YP_001559987.1 3546243 R 357809 CDS YP_001559988.1 160881020 5745164 complement(3548685..3550367) 1 NC_010001.1 PFAM: Dak phosphatase; KEGG: amt:Amet_2771 Dak phosphatase; Dak phosphatase 3550367 5745164 Cphy_2891 Clostridium phytofermentans ISDg Dak phosphatase YP_001559988.1 3548685 R 357809 CDS YP_001559989.1 160881021 5745165 complement(3550388..3550744) 1 NC_010001.1 PFAM: protein of unknown function DUF322; KEGG: oih:OB1515 hypothetical protein; hypothetical protein 3550744 5745165 Cphy_2892 Clostridium phytofermentans ISDg hypothetical protein YP_001559989.1 3550388 R 357809 CDS YP_001559990.1 160881022 5745166 complement(3551249..3551446) 1 NC_010001.1 PFAM: ribosomal protein L28; KEGG: swo:Swol_0757 50S ribosomal protein L28; 50S ribosomal protein L28 3551446 5745166 Cphy_2893 Clostridium phytofermentans ISDg 50S ribosomal protein L28 YP_001559990.1 3551249 R 357809 CDS YP_001559991.1 160881023 5745167 complement(3551616..3552029) 1 NC_010001.1 KEGG: swo:Swol_1906 hypothetical protein; hypothetical protein 3552029 5745167 Cphy_2894 Clostridium phytofermentans ISDg hypothetical protein YP_001559991.1 3551616 R 357809 CDS YP_001559992.1 160881024 5743955 complement(3552029..3553351) 1 NC_010001.1 KEGG: tva:TVAG_264660 hypothetical protein Pfam: RNA_polI_A34 MAP7 FYDLN_acid PROSITE: ASP_RICH GLU_RICH LYS_RICH; hypothetical protein 3553351 5743955 Cphy_2895 Clostridium phytofermentans ISDg hypothetical protein YP_001559992.1 3552029 R 357809 CDS YP_001559993.1 160881025 5743956 complement(3553393..3553701) 1 NC_010001.1 hypothetical protein 3553701 5743956 Cphy_2896 Clostridium phytofermentans ISDg hypothetical protein YP_001559993.1 3553393 R 357809 CDS YP_001559994.1 160881026 5743957 complement(3553805..3555202) 1 NC_010001.1 KEGG: tte:TTE1994 hypothetical protein; hypothetical protein 3555202 5743957 Cphy_2897 Clostridium phytofermentans ISDg hypothetical protein YP_001559994.1 3553805 R 357809 CDS YP_001559995.1 160881027 5743958 complement(3555322..3556476) 1 NC_010001.1 hypothetical protein 3556476 5743958 Cphy_2898 Clostridium phytofermentans ISDg hypothetical protein YP_001559995.1 3555322 R 357809 CDS YP_001559996.1 160881028 5743959 complement(3556463..3557668) 1 NC_010001.1 KEGG: oih:OB2135 ABC-2 type transport system permease; hypothetical protein 3557668 5743959 Cphy_2899 Clostridium phytofermentans ISDg hypothetical protein YP_001559996.1 3556463 R 357809 CDS YP_001559997.1 160881029 5743960 complement(3557688..3559112) 1 NC_010001.1 KEGG: cdf:CD3394 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase 3559112 5743960 Cphy_2900 Clostridium phytofermentans ISDg pyruvate kinase YP_001559997.1 3557688 R 357809 CDS YP_001559998.1 160881030 5743961 complement(3559130..3560023) 1 NC_010001.1 KEGG: cno:NT01CX_0663 hypothetical protein; hypothetical protein 3560023 5743961 Cphy_2901 Clostridium phytofermentans ISDg hypothetical protein YP_001559998.1 3559130 R 357809 CDS YP_001559999.1 160881031 5743962 3560380..3562164 1 NC_010001.1 PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein; fibronectin-binding A domain-containing protein 3562164 5743962 Cphy_2902 Clostridium phytofermentans ISDg fibronectin-binding A domain-containing protein YP_001559999.1 3560380 D 357809 CDS YP_001560000.1 160881032 5743963 3562210..3563034 1 NC_010001.1 KEGG: csc:Csac_2251 histidinol phosphate phosphatase HisJ family; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; HisJ family histidinol phosphate phosphatase 3563034 5743963 Cphy_2903 Clostridium phytofermentans ISDg HisJ family histidinol phosphate phosphatase YP_001560000.1 3562210 D 357809 CDS YP_001560001.1 160881033 5743964 3563268..3563867 1 NC_010001.1 PFAM: protein of unknown function DUF925; KEGG: cps:CPS_3132 hypothetical protein; hypothetical protein 3563867 5743964 Cphy_2904 Clostridium phytofermentans ISDg hypothetical protein YP_001560001.1 3563268 D 357809 CDS YP_001560002.1 160881034 5743965 complement(3564067..3565140) 1 NC_010001.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 3565140 mnmA 5743965 mnmA Clostridium phytofermentans ISDg tRNA-specific 2-thiouridylase MnmA YP_001560002.1 3564067 R 357809 CDS YP_001560003.1 160881035 5743966 complement(3565460..3565900) 1 NC_010001.1 TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein; KEGG: amt:Amet_2454 nitrogen-fixing NifU domain protein; FeS cluster assembly scaffold protein NifU 3565900 5743966 Cphy_2906 Clostridium phytofermentans ISDg FeS cluster assembly scaffold protein NifU YP_001560003.1 3565460 R 357809 CDS YP_001560004.1 160881036 5743967 complement(3565952..3567148) 1 NC_010001.1 KEGG: cth:Cthe_0720 aminotransferase, class V; TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; cysteine desulfurase NifS 3567148 5743967 Cphy_2907 Clostridium phytofermentans ISDg cysteine desulfurase NifS YP_001560004.1 3565952 R 357809 CDS YP_001560005.1 160881037 5743968 3567690..3569219 1 NC_010001.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: cth:Cthe_2688 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 3569219 5743968 Cphy_2908 Clostridium phytofermentans ISDg polysaccharide biosynthesis protein YP_001560005.1 3567690 D 357809 CDS YP_001560006.1 160881038 5743969 complement(3569537..3571480) 1 NC_010001.1 KEGG: gsu:GSU2377 hypothetical protein; hypothetical protein 3571480 5743969 Cphy_2909 Clostridium phytofermentans ISDg hypothetical protein YP_001560006.1 3569537 R 357809 CDS YP_001560007.1 160881039 5743970 complement(3571870..3572451) 1 NC_010001.1 hypothetical protein 3572451 5743970 Cphy_2910 Clostridium phytofermentans ISDg hypothetical protein YP_001560007.1 3571870 R 357809 CDS YP_001560008.1 160881040 5743971 complement(3572903..3574168) 1 NC_010001.1 PFAM: cytochrome P450; KEGG: cac:CAC3330 cytochrome P450 family protein, YBDT B.subtilis ortholog; cytochrome P450 3574168 5743971 Cphy_2911 Clostridium phytofermentans ISDg cytochrome P450 YP_001560008.1 3572903 R 357809 CDS YP_001560009.1 160881041 5743972 complement(3574460..3575062) 1 NC_010001.1 PFAM: helix-turn-helix domain protein; KEGG: dsy:DSY3594 hypothetical protein; XRE family transcriptional regulator 3575062 5743972 Cphy_2912 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001560009.1 3574460 R 357809 CDS YP_001560010.1 160881042 5743973 complement(3575225..3575569) 1 NC_010001.1 KEGG: dsy:DSY3591 hypothetical protein; hypothetical protein 3575569 5743973 Cphy_2913 Clostridium phytofermentans ISDg hypothetical protein YP_001560010.1 3575225 R 357809 CDS YP_001560011.1 160881043 5743974 complement(3575690..3576487) 1 NC_010001.1 KEGG: bad:BAD_0608 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; pyrroline-5-carboxylate reductase 3576487 5743974 Cphy_2914 Clostridium phytofermentans ISDg pyrroline-5-carboxylate reductase YP_001560011.1 3575690 R 357809 CDS YP_001560012.1 160881044 5743975 complement(3576731..3578425) 1 NC_010001.1 PFAM: amine oxidase; KEGG: cbe:Cbei_4105 amine oxidase; amine oxidase 3578425 5743975 Cphy_2915 Clostridium phytofermentans ISDg amine oxidase YP_001560012.1 3576731 R 357809 CDS YP_001560013.1 160881045 5743976 complement(3578561..3578980) 1 NC_010001.1 KEGG: bth:BT_4485 hypothetical protein; hypothetical protein 3578980 5743976 Cphy_2916 Clostridium phytofermentans ISDg hypothetical protein YP_001560013.1 3578561 R 357809 CDS YP_001560014.1 160881046 5743977 complement(3578946..3579290) 1 NC_010001.1 PFAM: protein of unknown function DUF419; KEGG: bay:RBAM_005300 hypothetical protein; hypothetical protein 3579290 5743977 Cphy_2917 Clostridium phytofermentans ISDg hypothetical protein YP_001560014.1 3578946 R 357809 CDS YP_001560015.1 160881047 5743978 complement(3579746..3580780) 1 NC_010001.1 hypothetical protein 3580780 5743978 Cphy_2918 Clostridium phytofermentans ISDg hypothetical protein YP_001560015.1 3579746 R 357809 CDS YP_001560016.1 160881048 5743979 3581335..3582351 1 NC_010001.1 PFAM: protein of unknown function DUF1565; KEGG: sde:Sde_2946 hypothetical protein; hypothetical protein 3582351 5743979 Cphy_2919 Clostridium phytofermentans ISDg hypothetical protein YP_001560016.1 3581335 D 357809 CDS YP_001560017.1 160881049 5743980 complement(3583103..3583891) 1 NC_010001.1 KEGG: spd:SPD_0495 hypothetical protein; hypothetical protein 3583891 5743980 Cphy_2920 Clostridium phytofermentans ISDg hypothetical protein YP_001560017.1 3583103 R 357809 CDS YP_001560018.1 160881050 5743981 complement(3584404..3585351) 1 NC_010001.1 hypothetical protein 3585351 5743981 Cphy_2921 Clostridium phytofermentans ISDg hypothetical protein YP_001560018.1 3584404 R 357809 CDS YP_001560019.1 160881051 5743982 complement(3585326..3587308) 1 NC_010001.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: ppe:PEPE_0535 superfamily II DNA/RNA helicase, SNF2 family; SNF2-related protein 3587308 5743982 Cphy_2922 Clostridium phytofermentans ISDg SNF2-related protein YP_001560019.1 3585326 R 357809 CDS YP_001560020.1 160881052 5743983 complement(3587313..3588605) 1 NC_010001.1 KEGG: bad:BAD_1231 hypothetical protein; hypothetical protein 3588605 5743983 Cphy_2923 Clostridium phytofermentans ISDg hypothetical protein YP_001560020.1 3587313 R 357809 CDS YP_001560021.1 160881053 5743984 complement(3588609..3590222) 1 NC_010001.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: mbu:Mbur_1539 DNA-cytosine methyltransferase; DNA-cytosine methyltransferase 3590222 5743984 Cphy_2924 Clostridium phytofermentans ISDg DNA-cytosine methyltransferase YP_001560021.1 3588609 R 357809 CDS YP_001560022.1 160881054 5743985 complement(3591098..3592003) 1 NC_010001.1 PFAM: homoserine O-succinyltransferase; KEGG: bha:BH2280 homoserine O-succinyltransferase; homoserine O-succinyltransferase 3592003 5743985 Cphy_2925 Clostridium phytofermentans ISDg homoserine O-succinyltransferase YP_001560022.1 3591098 R 357809 CDS YP_001560023.1 160881055 5743987 complement(3593611..3595572) 1 NC_010001.1 KEGG: cac:CAC2673 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase; NAD-dependent DNA ligase 3595572 5743987 Cphy_2927 Clostridium phytofermentans ISDg NAD-dependent DNA ligase YP_001560023.1 3593611 R 357809 CDS YP_001560024.1 160881056 5743988 complement(3595764..3597197) 1 NC_010001.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cpe:CPE2313 pseudouridylate synthase; pseudouridine synthase 3597197 5743988 Cphy_2928 Clostridium phytofermentans ISDg pseudouridine synthase YP_001560024.1 3595764 R 357809 CDS YP_001560025.1 160881057 5743989 complement(3597747..3597977) 1 NC_010001.1 hypothetical protein 3597977 5743989 Cphy_2929 Clostridium phytofermentans ISDg hypothetical protein YP_001560025.1 3597747 R 357809 CDS YP_001560026.1 160881058 5743991 3599017..3599754 1 NC_010001.1 hypothetical protein 3599754 5743991 Cphy_2930 Clostridium phytofermentans ISDg hypothetical protein YP_001560026.1 3599017 D 357809 CDS YP_001560027.1 160881059 5743992 complement(3600051..3600971) 1 NC_010001.1 hypothetical protein 3600971 5743992 Cphy_2931 Clostridium phytofermentans ISDg hypothetical protein YP_001560027.1 3600051 R 357809 CDS YP_001560028.1 160881060 5743993 complement(3601595..3602392) 1 NC_010001.1 KEGG: cbf:CLI_1258 hypothetical protein; hypothetical protein 3602392 5743993 Cphy_2932 Clostridium phytofermentans ISDg hypothetical protein YP_001560028.1 3601595 R 357809 CDS YP_001560029.1 160881061 5743994 complement(3602434..3604077) 1 NC_010001.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cth:Cthe_0408 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); diguanylate cyclase/phosphodiesterase 3604077 5743994 Cphy_2933 Clostridium phytofermentans ISDg diguanylate cyclase/phosphodiesterase YP_001560029.1 3602434 R 357809 CDS YP_001560030.1 160881062 5743995 complement(3604722..3606101) 1 NC_010001.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 3606101 5743995 Cphy_2934 Clostridium phytofermentans ISDg oxidoreductase YP_001560030.1 3604722 R 357809 CDS YP_001560031.1 160881063 5743996 complement(3606114..3607004) 1 NC_010001.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cno:NT01CX_0467 glutamate synthase, small subunit; ferredoxin-NADP(+) reductase subunit alpha 3607004 5743996 Cphy_2935 Clostridium phytofermentans ISDg ferredoxin-NADP(+) reductase subunit alpha YP_001560031.1 3606114 R 357809 CDS YP_001560032.1 160881064 5743997 3607450..3609303 1 NC_010001.1 KEGG: cth:Cthe_0556 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; asparagine synthase 3609303 5743997 Cphy_2936 Clostridium phytofermentans ISDg asparagine synthase YP_001560032.1 3607450 D 357809 CDS YP_001560033.1 160881065 5743998 complement(3609559..3610320) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; KEGG: amt:Amet_0102 signal transduction histidine kinase regulating citrate/malate metabolism; signal transduction histidine kinase regulating citrate/malate metabolism 3610320 5743998 Cphy_2937 Clostridium phytofermentans ISDg signal transduction histidine kinase regulating citrate/malate metabolism YP_001560033.1 3609559 R 357809 CDS YP_001560034.1 160881066 5743999 complement(3610313..3611035) 1 NC_010001.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: amt:Amet_3563 two component transcriptional regulator, LytTR family; LytTR family two component transcriptional regulator 3611035 5743999 Cphy_2938 Clostridium phytofermentans ISDg LytTR family two component transcriptional regulator YP_001560034.1 3610313 R 357809 CDS YP_001560035.1 160881067 5744000 complement(3611076..3612014) 1 NC_010001.1 PFAM: band 7 protein; KEGG: fnu:FN1549 stomatin like protein; hypothetical protein 3612014 5744000 Cphy_2939 Clostridium phytofermentans ISDg hypothetical protein YP_001560035.1 3611076 R 357809 CDS YP_001560036.1 160881068 5744001 complement(3612016..3612456) 1 NC_010001.1 PFAM: protein of unknown function DUF107; KEGG: aau:AAur_2191 integral membrane protein; hypothetical protein 3612456 5744001 Cphy_2940 Clostridium phytofermentans ISDg hypothetical protein YP_001560036.1 3612016 R 357809 CDS YP_001560037.1 160881069 5744002 complement(3612634..3614100) 1 NC_010001.1 KEGG: san:gbs0669 hypothetical protein; hypothetical protein 3614100 5744002 Cphy_2941 Clostridium phytofermentans ISDg hypothetical protein YP_001560037.1 3612634 R 357809 CDS YP_001560038.1 160881070 5744003 3614314..3615204 1 NC_010001.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: cpf:CPF_1412 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase 3615204 5744003 Cphy_2942 Clostridium phytofermentans ISDg P-type HAD superfamily ATPase YP_001560038.1 3614314 D 357809 CDS YP_001560039.1 160881071 5744004 3615256..3615507 1 NC_010001.1 KEGG: cpf:CPF_1567 hypothetical protein; hypothetical protein 3615507 5744004 Cphy_2943 Clostridium phytofermentans ISDg hypothetical protein YP_001560039.1 3615256 D 357809 CDS YP_001560040.1 160881072 5744005 complement(3615543..3616220) 1 NC_010001.1 KEGG: dsy:DSY4643 hypothetical protein; hypothetical protein 3616220 5744005 Cphy_2944 Clostridium phytofermentans ISDg hypothetical protein YP_001560040.1 3615543 R 357809 CDS YP_001560041.1 160881073 5744006 complement(3616223..3616636) 1 NC_010001.1 TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: cth:Cthe_1704 toxin secretion/phage lysis holin; toxin secretion/phage lysis holin 3616636 5744006 Cphy_2945 Clostridium phytofermentans ISDg toxin secretion/phage lysis holin YP_001560041.1 3616223 R 357809 CDS YP_001560042.1 160881074 5744007 complement(3616865..3617200) 1 NC_010001.1 hypothetical protein 3617200 5744007 Cphy_2946 Clostridium phytofermentans ISDg hypothetical protein YP_001560042.1 3616865 R 357809 CDS YP_001560043.1 160881075 5744008 complement(3617200..3618192) 1 NC_010001.1 KEGG: tva:TVAG_050640 BNR/Asp-box repeat family protein; hypothetical protein 3618192 5744008 Cphy_2947 Clostridium phytofermentans ISDg hypothetical protein YP_001560043.1 3617200 R 357809 CDS YP_001560044.1 160881076 5744009 complement(3618204..3618608) 1 NC_010001.1 KEGG: ckl:CKL_3246 hypothetical protein; hypothetical protein 3618608 5744009 Cphy_2948 Clostridium phytofermentans ISDg hypothetical protein YP_001560044.1 3618204 R 357809 CDS YP_001560045.1 160881077 5744010 complement(3618608..3619150) 1 NC_010001.1 KEGG: cdf:CD2899 phage protein; hypothetical protein 3619150 5744010 Cphy_2949 Clostridium phytofermentans ISDg hypothetical protein YP_001560045.1 3618608 R 357809 CDS YP_001560046.1 160881078 5744011 complement(3619140..3620219) 1 NC_010001.1 PFAM: Baseplate J family protein; KEGG: cdf:CD2900 phage tail protein; baseplate J family protein 3620219 5744011 Cphy_2950 Clostridium phytofermentans ISDg baseplate J family protein YP_001560046.1 3619140 R 357809 CDS YP_001560047.1 160881079 5744012 complement(3620222..3620614) 1 NC_010001.1 KEGG: cdf:CD2901 phage protein; phage protein 3620614 5744012 Cphy_2951 Clostridium phytofermentans ISDg phage protein YP_001560047.1 3620222 R 357809 CDS YP_001560048.1 160881080 5744013 complement(3620614..3620937) 1 NC_010001.1 KEGG: dsy:DSY3951 hypothetical protein; hypothetical protein 3620937 5744013 Cphy_2952 Clostridium phytofermentans ISDg hypothetical protein YP_001560048.1 3620614 R 357809 CDS YP_001560049.1 160881081 5744014 complement(3620921..3621877) 1 NC_010001.1 KEGG: cdf:CD2903 phage cell wall hydrolase; phage cell wall hydrolase 3621877 5744014 Cphy_2953 Clostridium phytofermentans ISDg phage cell wall hydrolase YP_001560049.1 3620921 R 357809 CDS YP_001560050.1 160881082 5744015 complement(3621795..3622733) 1 NC_010001.1 PFAM: Peptidoglycan-binding LysM; KEGG: cdf:CD2904 phage cell wall hydrolase; peptidoglycan-binding LysM 3622733 5744015 Cphy_2954 Clostridium phytofermentans ISDg peptidoglycan-binding LysM YP_001560050.1 3621795 R 357809 CDS YP_001560051.1 160881083 5744016 complement(3622743..3624881) 1 NC_010001.1 KEGG: cbo:CBO1737 phage protein; hypothetical protein 3624881 5744016 Cphy_2955 Clostridium phytofermentans ISDg hypothetical protein YP_001560051.1 3622743 R 357809 CDS YP_001560052.1 160881084 5744017 complement(3625070..3625501) 1 NC_010001.1 PFAM: XkdN-like protein; KEGG: cdf:CD2908 phage protein; XkdN-like protein 3625501 5744017 Cphy_2956 Clostridium phytofermentans ISDg XkdN-like protein YP_001560052.1 3625070 R 357809 CDS YP_001560053.1 160881085 5744018 complement(3625572..3626045) 1 NC_010001.1 KEGG: cdf:CD2909 phage protein; phage protein 3626045 5744018 Cphy_2957 Clostridium phytofermentans ISDg phage protein YP_001560053.1 3625572 R 357809 CDS YP_001560054.1 160881086 5744019 complement(3626064..3627371) 1 NC_010001.1 KEGG: cdf:CD2910 phage protein; phage protein 3627371 5744019 Cphy_2958 Clostridium phytofermentans ISDg phage protein YP_001560054.1 3626064 R 357809 CDS YP_001560055.1 160881087 5744020 complement(3627374..3627553) 1 NC_010001.1 KEGG: cdf:CD2910A hypothetical protein; hypothetical protein 3627553 5744020 Cphy_2959 Clostridium phytofermentans ISDg hypothetical protein YP_001560055.1 3627374 R 357809 CDS YP_001560056.1 160881088 5744021 complement(3627560..3627985) 1 NC_010001.1 KEGG: cdf:CD2911 phage protein; phage protein 3627985 5744021 Cphy_2960 Clostridium phytofermentans ISDg phage protein YP_001560056.1 3627560 R 357809 CDS YP_001560057.1 160881089 5744022 complement(3627982..3628440) 1 NC_010001.1 KEGG: cdf:CD2912 phage protein; phage protein 3628440 5744022 Cphy_2961 Clostridium phytofermentans ISDg phage protein YP_001560057.1 3627982 R 357809 CDS YP_001560058.1 160881090 5744023 complement(3628440..3628814) 1 NC_010001.1 KEGG: cdf:CD2913 phage protein; phage protein 3628814 5744023 Cphy_2962 Clostridium phytofermentans ISDg phage protein YP_001560058.1 3628440 R 357809 CDS YP_001560059.1 160881091 5744024 complement(3628811..3629158) 1 NC_010001.1 KEGG: cbf:CLI_2413 hypothetical protein; hypothetical protein 3629158 5744024 Cphy_2963 Clostridium phytofermentans ISDg hypothetical protein YP_001560059.1 3628811 R 357809 CDS YP_001560060.1 160881092 5744025 complement(3629170..3630177) 1 NC_010001.1 KEGG: cbf:CLI_2414 phage coat protein; phage coat protein 3630177 5744025 Cphy_2964 Clostridium phytofermentans ISDg phage coat protein YP_001560060.1 3629170 R 357809 CDS YP_001560061.1 160881093 5744026 complement(3630197..3630799) 1 NC_010001.1 KEGG: cno:NT01CX_2174 scaffold protein; hypothetical protein 3630799 5744026 Cphy_2965 Clostridium phytofermentans ISDg hypothetical protein YP_001560061.1 3630197 R 357809 CDS YP_001560062.1 160881094 5744027 complement(3630957..3631217) 1 NC_010001.1 KEGG: lin:lin0103 hypothetical protein; hypothetical protein 3631217 5744027 Cphy_2966 Clostridium phytofermentans ISDg hypothetical protein YP_001560062.1 3630957 R 357809 CDS YP_001560063.1 160881095 5744028 complement(3631397..3631768) 1 NC_010001.1 hypothetical protein 3631768 5744028 Cphy_2967 Clostridium phytofermentans ISDg hypothetical protein YP_001560063.1 3631397 R 357809 CDS YP_001560064.1 160881096 5744029 complement(3631804..3632031) 1 NC_010001.1 KEGG: cpf:CPF_0953 hypothetical protein; hypothetical protein 3632031 5744029 Cphy_2968 Clostridium phytofermentans ISDg hypothetical protein YP_001560064.1 3631804 R 357809 CDS YP_001560065.1 160881097 5744030 complement(3632037..3633593) 1 NC_010001.1 TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7; KEGG: cdf:CD2920 phage protein; SPP1 family phage head morphogenesis protein 3633593 5744030 Cphy_2969 Clostridium phytofermentans ISDg SPP1 family phage head morphogenesis protein YP_001560065.1 3632037 R 357809 CDS YP_001560066.1 160881098 5744031 complement(3633580..3634968) 1 NC_010001.1 TIGRFAM: phage portal protein, SPP1 family; PFAM: portal protein SPP1; KEGG: lga:LGAS_0668 phage portal protein, SPP1 GP6-like; SPP1 family phage portal protein 3634968 5744031 Cphy_2970 Clostridium phytofermentans ISDg SPP1 family phage portal protein YP_001560066.1 3633580 R 357809 CDS YP_001560067.1 160881099 5744032 complement(3635219..3636634) 1 NC_010001.1 TIGRFAM: phage uncharacterized protein; KEGG: cbf:CLI_2421 hypothetical protein; phage protein 3636634 5744032 Cphy_2971 Clostridium phytofermentans ISDg phage protein YP_001560067.1 3635219 R 357809 CDS YP_001560068.1 160881100 5744033 complement(3636624..3637196) 1 NC_010001.1 KEGG: bha:BH3534 hypothetical protein; hypothetical protein 3637196 5744033 Cphy_2972 Clostridium phytofermentans ISDg hypothetical protein YP_001560068.1 3636624 R 357809 CDS YP_001560069.1 160881101 5744034 complement(3637537..3637863) 1 NC_010001.1 hypothetical protein 3637863 5744034 Cphy_2973 Clostridium phytofermentans ISDg hypothetical protein YP_001560069.1 3637537 R 357809 CDS YP_001560070.1 160881102 5744035 complement(3637889..3638503) 1 NC_010001.1 hypothetical protein 3638503 5744035 Cphy_2974 Clostridium phytofermentans ISDg hypothetical protein YP_001560070.1 3637889 R 357809 CDS YP_001560071.1 160881103 5744037 complement(3639201..3639698) 1 NC_010001.1 KEGG: drm:Dred_2611 hypothetical protein; hypothetical protein 3639698 5744037 Cphy_2975 Clostridium phytofermentans ISDg hypothetical protein YP_001560071.1 3639201 R 357809 CDS YP_001560072.1 160881104 5744038 3639930..3640382 1 NC_010001.1 hypothetical protein 3640382 5744038 Cphy_2976 Clostridium phytofermentans ISDg hypothetical protein YP_001560072.1 3639930 D 357809 CDS YP_001560073.1 160881105 5744039 3641421..3642266 1 NC_010001.1 KEGG: pgi:PG0854 hypothetical protein; hypothetical protein 3642266 5744039 Cphy_2977 Clostridium phytofermentans ISDg hypothetical protein YP_001560073.1 3641421 D 357809 CDS YP_001560074.1 160881106 5744040 complement(3642328..3642540) 1 NC_010001.1 hypothetical protein 3642540 5744040 Cphy_2978 Clostridium phytofermentans ISDg hypothetical protein YP_001560074.1 3642328 R 357809 CDS YP_001560075.1 160881107 5744041 complement(3642565..3642954) 1 NC_010001.1 transcriptional regulator CdaR 3642954 5744041 Cphy_2979 Clostridium phytofermentans ISDg transcriptional regulator CdaR YP_001560075.1 3642565 R 357809 CDS YP_001560076.1 160881108 5744042 complement(3643139..3643879) 1 NC_010001.1 hypothetical protein 3643879 5744042 Cphy_2980 Clostridium phytofermentans ISDg hypothetical protein YP_001560076.1 3643139 R 357809 CDS YP_001560077.1 160881109 5744043 complement(3643882..3644262) 1 NC_010001.1 hypothetical protein 3644262 5744043 Cphy_2981 Clostridium phytofermentans ISDg hypothetical protein YP_001560077.1 3643882 R 357809 CDS YP_001560078.1 160881110 5744044 complement(3644450..3645715) 1 NC_010001.1 hypothetical protein 3645715 5744044 Cphy_2982 Clostridium phytofermentans ISDg hypothetical protein YP_001560078.1 3644450 R 357809 CDS YP_001560079.1 160881111 5744045 complement(3645696..3645974) 1 NC_010001.1 hypothetical protein 3645974 5744045 Cphy_2983 Clostridium phytofermentans ISDg hypothetical protein YP_001560079.1 3645696 R 357809 CDS YP_001560080.1 160881112 5744046 complement(3646294..3648168) 1 NC_010001.1 KEGG: drm:Dred_2613 superfamily II helicase and inactivated derivatives-like protein; superfamily II helicase 3648168 5744046 Cphy_2984 Clostridium phytofermentans ISDg superfamily II helicase YP_001560080.1 3646294 R 357809 CDS YP_001560081.1 160881113 5744047 complement(3648165..3648665) 1 NC_010001.1 PFAM: zinc finger CHC2-family protein; KEGG: ppd:Ppro_0215 zinc finger, CHC2-family protein; zinc finger CHC2-family protein 3648665 5744047 Cphy_2985 Clostridium phytofermentans ISDg zinc finger CHC2-family protein YP_001560081.1 3648165 R 357809 CDS YP_001560082.1 160881114 5744048 complement(3648655..3649155) 1 NC_010001.1 hypothetical protein 3649155 5744048 Cphy_2986 Clostridium phytofermentans ISDg hypothetical protein YP_001560082.1 3648655 R 357809 CDS YP_001560083.1 160881115 5744049 complement(3649175..3649600) 1 NC_010001.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cno:NT01CX_0884 single-stranded DNA binding protein; single-strand binding protein 3649600 5744049 Cphy_2987 Clostridium phytofermentans ISDg single-strand binding protein YP_001560083.1 3649175 R 357809 CDS YP_001560084.1 160881116 5744050 complement(3649600..3650316) 1 NC_010001.1 KEGG: sgl:SG0930 hypothetical protein; hypothetical protein 3650316 5744050 Cphy_2988 Clostridium phytofermentans ISDg hypothetical protein YP_001560084.1 3649600 R 357809 CDS YP_001560085.1 160881117 5744051 complement(3650329..3651438) 1 NC_010001.1 KEGG: tva:TVAG_368940 Kelch motif family protein Pfam: RhoGEF Kelch_1 Kelch_2 RNA_polI_A34 U79_P34 TolA DUF1217 PROSITE: PENTAXIN GLU_RICH LYS_RICH DH_2; hypothetical protein 3651438 5744051 Cphy_2989 Clostridium phytofermentans ISDg hypothetical protein YP_001560085.1 3650329 R 357809 CDS YP_001560086.1 160881118 5744052 complement(3651441..3652079) 1 NC_010001.1 hypothetical protein 3652079 5744052 Cphy_2990 Clostridium phytofermentans ISDg hypothetical protein YP_001560086.1 3651441 R 357809 CDS YP_001560087.1 160881119 5744053 complement(3652072..3652677) 1 NC_010001.1 SMART: metal-dependent phosphohydrolase HD region; KEGG: cac:CAC1938 predicted HD superfamily hydrolase; metal dependent phosphohydrolase 3652677 5744053 Cphy_2991 Clostridium phytofermentans ISDg metal dependent phosphohydrolase YP_001560087.1 3652072 R 357809 CDS YP_001560088.1 160881120 5744054 complement(3652818..3653081) 1 NC_010001.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: oih:OB0045 transcriptional pleiotropic regulator of transition state genes; AbrB family transcriptional regulator 3653081 5744054 Cphy_2992 Clostridium phytofermentans ISDg AbrB family transcriptional regulator YP_001560088.1 3652818 R 357809 CDS YP_001560089.1 160881121 5744055 complement(3654197..3654415) 1 NC_010001.1 KEGG: lsl:LSL_1861 phage-related DNA binding protein; phage-related DNA binding protein 3654415 5744055 Cphy_2993 Clostridium phytofermentans ISDg phage-related DNA binding protein YP_001560089.1 3654197 R 357809 CDS YP_001560090.1 160881122 5744056 3654603..3654932 1 NC_010001.1 PFAM: helix-turn-helix domain protein; KEGG: bce:BC3704 LexA repressor; XRE family transcriptional regulator 3654932 5744056 Cphy_2994 Clostridium phytofermentans ISDg XRE family transcriptional regulator YP_001560090.1 3654603 D 357809 CDS YP_001560091.1 160881123 5744057 3654965..3655618 1 NC_010001.1 PFAM: protein of unknown function DUF955; hypothetical protein 3655618 5744057 Cphy_2995 Clostridium phytofermentans ISDg hypothetical protein YP_001560091.1 3654965 D 357809 CDS YP_001560092.1 160881124 5744058 3655705..3656382 1 NC_010001.1 hypothetical protein 3656382 5744058 Cphy_2996 Clostridium phytofermentans ISDg hypothetical protein YP_001560092.1 3655705 D 357809 CDS YP_001560093.1 160881125 5744059 3656562..3657896 1 NC_010001.1 PFAM: Resolvase domain; Recombinase; KEGG: cdf:CD2952 phage site-specific recombinase; resolvase domain-containing protein 3657896 5744059 Cphy_2997 Clostridium phytofermentans ISDg resolvase domain-containing protein YP_001560093.1 3656562 D 357809 CDS YP_001560094.1 160881126 5744060 3657958..3659730 1 NC_010001.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; KEGG: tte:TTE0030 Cation transport ATPases; P-type HAD superfamily ATPase 3659730 5744060 Cphy_2998 Clostridium phytofermentans ISDg P-type HAD superfamily ATPase YP_001560094.1 3657958 D 357809 CDS YP_001560095.1 160881127 5744061 complement(3660007..3660447) 1 NC_010001.1 PFAM: thioesterase superfamily protein; KEGG: smu:SMU.795 conserved hypothetical protein; probable esterase; thioesterase superfamily protein 3660447 5744061 Cphy_2999 Clostridium phytofermentans ISDg thioesterase superfamily protein YP_001560095.1 3660007 R 357809 CDS YP_001560096.1 160881128 5743326 complement(3660492..3661094) 1 NC_010001.1 PFAM: conserved hypothetical protein; KEGG: lbu:LBUL_0756 hypothetical protein; hypothetical protein 3661094 5743326 Cphy_3000 Clostridium phytofermentans ISDg hypothetical protein YP_001560096.1 3660492 R 357809 CDS YP_001560097.1 160881129 5743327 complement(3661586..3662899) 1 NC_010001.1 PFAM: enolase; KEGG: cth:Cthe_0143 phosphopyruvate hydratase; phosphopyruvate hydratase 3662899 5743327 Cphy_3001 Clostridium phytofermentans ISDg phosphopyruvate hydratase YP_001560097.1 3661586 R 357809 CDS YP_001560098.1 160881130 5743328 complement(3663333..3664799) 1 NC_010001.1 PFAM: protein of unknown function DUF1058; cell wall hydrolase SleB; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: cdf:CD3563 spore cortex-lytic enzyme; cell wall hydrolase SleB 3664799 5743328 Cphy_3002 Clostridium phytofermentans ISDg cell wall hydrolase SleB YP_001560098.1 3663333 R 357809 CDS YP_001560099.1 160881131 5743329 complement(3664994..3665893) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: drm:Dred_2229 hypothetical protein; N-acetyltransferase GCN5 3665893 5743329 Cphy_3003 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001560099.1 3664994 R 357809 CDS YP_001560100.1 160881132 5743330 complement(3665936..3666829) 1 NC_010001.1 KEGG: dsy:DSY1282 hypothetical protein; hypothetical protein 3666829 5743330 Cphy_3004 Clostridium phytofermentans ISDg hypothetical protein YP_001560100.1 3665936 R 357809 CDS YP_001560101.1 160881133 5743331 complement(3667133..3667765) 1 NC_010001.1 PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; KEGG: cpr:CPR_2131 CBS domain protein; hypothetical protein 3667765 5743331 Cphy_3005 Clostridium phytofermentans ISDg hypothetical protein YP_001560101.1 3667133 R 357809 CDS YP_001560102.1 160881134 5743332 3667934..3669322 1 NC_010001.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: cpe:CPE0690 argininosuccinate lyase; argininosuccinate lyase 3669322 5743332 Cphy_3006 Clostridium phytofermentans ISDg argininosuccinate lyase YP_001560102.1 3667934 D 357809 CDS YP_001560103.1 160881135 5743333 complement(3669721..3671307) 1 NC_010001.1 KEGG: bcz:BCZK4583 conserved hypothetical protein; possible permease; hypothetical protein 3671307 5743333 Cphy_3007 Clostridium phytofermentans ISDg hypothetical protein YP_001560103.1 3669721 R 357809 CDS YP_001560104.1 160881136 5743334 complement(3671335..3672045) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:BCZK4584 ABC transporter, ATP-binding protein; ABC transporter 3672045 5743334 Cphy_3008 Clostridium phytofermentans ISDg ABC transporter YP_001560104.1 3671335 R 357809 CDS YP_001560105.1 160881137 5743335 complement(3672467..3674620) 1 NC_010001.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: cbe:Cbei_4674 glycoside hydrolase, family 3 domain protein; glycoside hydrolase family 3 3674620 5743335 Cphy_3009 Clostridium phytofermentans ISDg glycoside hydrolase family 3 YP_001560105.1 3672467 R 357809 CDS YP_001560106.1 160881138 5743336 complement(3674634..3675599) 1 NC_010001.1 PFAM: glycoside hydrolase family 10; KEGG: csc:Csac_2408 endo-1,4-beta-xylanase; endo-1,4-beta-xylanase 3675599 5743336 Cphy_3010 Clostridium phytofermentans ISDg endo-1,4-beta-xylanase YP_001560106.1 3674634 R 357809 CDS YP_001560107.1 160881139 5743337 3676460..3678076 1 NC_010001.1 PFAM: glycoside hydrolase family 43; KEGG: oih:OB2087 arabinofuranosidase; alpha-N-arabinofuranosidase 3678076 5743337 Cphy_3011 Clostridium phytofermentans ISDg alpha-N-arabinofuranosidase YP_001560107.1 3676460 D 357809 CDS YP_001560108.1 160881140 5743338 complement(3678276..3679193) 1 NC_010001.1 PFAM: SufBD protein; KEGG: cdf:CD3607 hypothetical protein; SufBD protein 3679193 5743338 Cphy_3012 Clostridium phytofermentans ISDg SufBD protein YP_001560108.1 3678276 R 357809 CDS YP_001560109.1 160881141 5743339 complement(3679197..3679919) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD3608 ABC transporter, ATP-binding protein; ABC transporter 3679919 5743339 Cphy_3013 Clostridium phytofermentans ISDg ABC transporter YP_001560109.1 3679197 R 357809 CDS YP_001560110.1 160881142 5743340 complement(3679913..3680746) 1 NC_010001.1 KEGG: cac:CAC2917 acetyl esterase family enzyme; acetyl esterase 3680746 5743340 Cphy_3014 Clostridium phytofermentans ISDg acetyl esterase YP_001560110.1 3679913 R 357809 CDS YP_001560111.1 160881143 5743341 3681345..3682634 1 NC_010001.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cno:NT01CX_1509 integral membrane protein with CBS domains; hypothetical protein 3682634 5743341 Cphy_3015 Clostridium phytofermentans ISDg hypothetical protein YP_001560111.1 3681345 D 357809 CDS YP_001560112.1 160881144 5743342 complement(3682757..3684088) 1 NC_010001.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: cbf:CLI_1211 magnesium transporter; magnesium transporter 3684088 5743342 Cphy_3016 Clostridium phytofermentans ISDg magnesium transporter YP_001560112.1 3682757 R 357809 CDS YP_001560113.1 160881145 5743343 complement(3684713..3686032) 1 NC_010001.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dsy:DSY3438 hypothetical protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein 3686032 5743343 Cphy_3017 Clostridium phytofermentans ISDg dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_001560113.1 3684713 R 357809 CDS YP_001560114.1 160881146 5743344 complement(3686029..3686427) 1 NC_010001.1 PFAM: protein of unknown function DUF134; KEGG: csc:Csac_0224 protein of unknown function DUF134; hypothetical protein 3686427 5743344 Cphy_3018 Clostridium phytofermentans ISDg hypothetical protein YP_001560114.1 3686029 R 357809 CDS YP_001560115.1 160881147 5743345 complement(3686677..3688038) 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_1760 MATE efflux family protein; MATE efflux family protein 3688038 5743345 Cphy_3019 Clostridium phytofermentans ISDg MATE efflux family protein YP_001560115.1 3686677 R 357809 CDS YP_001560116.1 160881148 5743346 complement(3688427..3689437) 1 NC_010001.1 KEGG: amt:Amet_3402 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase; Acetohydroxy acid isomeroreductase catalytic domain protein; ketol-acid reductoisomerase 3689437 5743346 Cphy_3020 Clostridium phytofermentans ISDg ketol-acid reductoisomerase YP_001560116.1 3688427 R 357809 CDS YP_001560117.1 160881149 5743347 complement(3689517..3690017) 1 NC_010001.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: cbe:Cbei_0212 acetolactate synthase, small subunit; acetolactate synthase small subunit 3690017 5743347 Cphy_3021 Clostridium phytofermentans ISDg acetolactate synthase small subunit YP_001560117.1 3689517 R 357809 CDS YP_001560118.1 160881150 5743348 complement(3690365..3692338) 1 NC_010001.1 PFAM: Heparinase II/III family protein; KEGG: cpr:CPR_0402 hypothetical protein; heparinase II/III family protein 3692338 5743348 Cphy_3022 Clostridium phytofermentans ISDg heparinase II/III family protein YP_001560118.1 3690365 R 357809 CDS YP_001560119.1 160881151 5743349 complement(3692529..3693836) 1 NC_010001.1 PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: cpe:CPE0324 probable glycosyl hydrolase; alpha-L-fucosidase 3693836 5743349 Cphy_3023 Clostridium phytofermentans ISDg alpha-L-fucosidase YP_001560119.1 3692529 R 357809 CDS YP_001560120.1 160881152 5743350 complement(3693829..3694824) 1 NC_010001.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: rsh:Rsph17029_1581 PHP C-terminal domain protein; phosphotransferase domain-containing protein 3694824 5743350 Cphy_3024 Clostridium phytofermentans ISDg phosphotransferase domain-containing protein YP_001560120.1 3693829 R 357809 CDS YP_001560121.1 160881153 5743351 complement(3694886..3696154) 1 NC_010001.1 PFAM: major facilitator superfamily MFS_1; KEGG: dps:DP1499 related to glycerol-3-phosphate transporter; major facilitator transporter 3696154 5743351 Cphy_3025 Clostridium phytofermentans ISDg major facilitator transporter YP_001560121.1 3694886 R 357809 CDS YP_001560122.1 160881154 5743352 complement(3696167..3697156) 1 NC_010001.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: rsh:Rsph17029_1581 PHP C-terminal domain protein; phosphotransferase domain-containing protein 3697156 5743352 Cphy_3026 Clostridium phytofermentans ISDg phosphotransferase domain-containing protein YP_001560122.1 3696167 R 357809 CDS YP_001560123.1 160881155 5743353 complement(3697330..3698733) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PF00303 sugar ABC transporter, substrate-binding protein; extracellular solute-binding protein 3698733 5743353 Cphy_3027 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001560123.1 3697330 R 357809 CDS YP_001560124.1 160881156 5743354 complement(3698864..3700276) 1 NC_010001.1 SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: bvu:BVU_0535 glycoside hydrolase family 29, candidate alpha-L-fucosidase; alpha-L-fucosidase 3700276 5743354 Cphy_3028 Clostridium phytofermentans ISDg alpha-L-fucosidase YP_001560124.1 3698864 R 357809 CDS YP_001560125.1 160881157 5743355 complement(3700293..3701468) 1 NC_010001.1 PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 unsaturated glucuronyl hydrolase; glycosyl hydrolase family protein 3701468 5743355 Cphy_3029 Clostridium phytofermentans ISDg glycosyl hydrolase family protein YP_001560125.1 3700293 R 357809 CDS YP_001560126.1 160881158 5743356 complement(3701523..3703697) 1 NC_010001.1 PFAM: conserved hypothetical protein; KEGG: cpf:CPF_0553 conserved hypothetical protein TIGR02336; hypothetical protein 3703697 5743356 Cphy_3030 Clostridium phytofermentans ISDg hypothetical protein YP_001560126.1 3701523 R 357809 CDS YP_001560127.1 160881159 5743357 complement(3703869..3704702) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0318 sugar ABC transporter permease; binding-protein-dependent transport systems inner membrane component 3704702 5743357 Cphy_3031 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001560127.1 3703869 R 357809 CDS YP_001560128.1 160881160 5743358 complement(3704716..3705639) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2233 ABC transporter, permease; binding-protein-dependent transport system inner membrane protein 3705639 5743358 Cphy_3032 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001560128.1 3704716 R 357809 CDS YP_001560129.1 160881161 5743359 complement(3705830..3707731) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: bld:BLi00440 ABC transporter (permease); RBL00398; histidine kinase internal region 3707731 5743359 Cphy_3033 Clostridium phytofermentans ISDg histidine kinase internal region YP_001560129.1 3705830 R 357809 CDS YP_001560130.1 160881162 5743360 complement(3707709..3709379) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_0684 response regulator receiver protein; two component AraC family transcriptional regulator 3709379 5743360 Cphy_3034 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001560130.1 3707709 R 357809 CDS YP_001560131.1 160881163 5743361 complement(3709613..3711676) 1 NC_010001.1 KEGG: dsy:DSY3902 hypothetical protein; hypothetical protein 3711676 5743361 Cphy_3035 Clostridium phytofermentans ISDg hypothetical protein YP_001560131.1 3709613 R 357809 CDS YP_001560132.1 160881164 5743362 3712064..3713209 1 NC_010001.1 PFAM: ApbE family lipoprotein; KEGG: cpf:CPF_2491 ApbE family protein; ApbE family lipoprotein 3713209 5743362 Cphy_3036 Clostridium phytofermentans ISDg ApbE family lipoprotein YP_001560132.1 3712064 D 357809 CDS YP_001560133.1 160881165 5743363 complement(3713455..3714732) 1 NC_010001.1 PFAM: adenylosuccinate synthetase; KEGG: deb:DehaBAV1_0867 adenylosuccinate synthase; adenylosuccinate synthetase 3714732 5743363 Cphy_3037 Clostridium phytofermentans ISDg adenylosuccinate synthetase YP_001560133.1 3713455 R 357809 CDS YP_001560134.1 160881166 5743364 complement(3714959..3715405) 1 NC_010001.1 KEGG: mpt:Mpe_B0284 dUTP diphosphatase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 3715405 5743364 Cphy_3038 Clostridium phytofermentans ISDg deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YP_001560134.1 3714959 R 357809 CDS YP_001560135.1 160881167 5743365 complement(3715605..3717011) 1 NC_010001.1 catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 3717011 5743365 Cphy_3039 Clostridium phytofermentans ISDg aminopeptidase YP_001560135.1 3715605 R 357809 CDS YP_001560136.1 160881168 5743366 complement(3717167..3718072) 1 NC_010001.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cth:Cthe_0553 transcriptional regulator, LysR family; LysR family transcriptional regulator 3718072 5743366 Cphy_3040 Clostridium phytofermentans ISDg LysR family transcriptional regulator YP_001560136.1 3717167 R 357809 CDS YP_001560137.1 160881169 5743367 complement(3718159..3719544) 1 NC_010001.1 PFAM: Aldehyde Dehydrogenase_; KEGG: tde:TDE2512 aldehyde dehydrogenase (NADP) family protein; aldehyde dehydrogenase 3719544 5743367 Cphy_3041 Clostridium phytofermentans ISDg aldehyde dehydrogenase YP_001560137.1 3718159 R 357809 CDS YP_001560138.1 160881170 5743368 3719789..3720238 1 NC_010001.1 PFAM: protein of unknown function DUF188; KEGG: cac:CAC2825 uncharacterized conserved protein, YQXD B.subtilis ortholog; hypothetical protein 3720238 5743368 Cphy_3042 Clostridium phytofermentans ISDg hypothetical protein YP_001560138.1 3719789 D 357809 CDS YP_001560139.1 160881171 5743369 complement(3720397..3721830) 1 NC_010001.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 3721830 5743369 Cphy_3043 Clostridium phytofermentans ISDg adenylosuccinate lyase YP_001560139.1 3720397 R 357809 CDS YP_001560140.1 160881172 5743370 complement(3721925..3723361) 1 NC_010001.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: cth:Cthe_1249 amidophosphoribosyltransferase; amidophosphoribosyltransferase 3723361 5743370 Cphy_3044 Clostridium phytofermentans ISDg amidophosphoribosyltransferase YP_001560140.1 3721925 R 357809 CDS YP_001560141.1 160881173 5743371 complement(3723470..3724177) 1 NC_010001.1 KEGG: csc:Csac_1999 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase 3724177 5743371 Cphy_3045 Clostridium phytofermentans ISDg phosphoribosylaminoimidazole-succinocarboxamide synthase YP_001560141.1 3723470 R 357809 CDS YP_001560142.1 160881174 5743372 complement(3724548..3725189) 1 NC_010001.1 PFAM: protein of unknown function DUF1653; KEGG: cac:CAC1208 hypothetical protein; hypothetical protein 3725189 5743372 Cphy_3046 Clostridium phytofermentans ISDg hypothetical protein YP_001560142.1 3724548 R 357809 CDS YP_001560143.1 160881175 5743373 complement(3725245..3726225) 1 NC_010001.1 hypothetical protein 3726225 5743373 Cphy_3047 Clostridium phytofermentans ISDg hypothetical protein YP_001560143.1 3725245 R 357809 CDS YP_001560144.1 160881176 5743374 complement(3726218..3726751) 1 NC_010001.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: llm:llmg_0282 anaerobic ribonucleoside-triphosphate reductase activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein 3726751 5743374 Cphy_3048 Clostridium phytofermentans ISDg anaerobic ribonucleoside-triphosphate reductase activating protein YP_001560144.1 3726218 R 357809 CDS YP_001560145.1 160881177 5743375 3727316..3728323 1 NC_010001.1 PFAM: regulatory protein MerR; KEGG: dsy:DSY0175 hypothetical protein; MerR family transcriptional regulator 3728323 5743375 Cphy_3049 Clostridium phytofermentans ISDg MerR family transcriptional regulator YP_001560145.1 3727316 D 357809 CDS YP_001560146.1 160881178 5743376 complement(3728972..3731098) 1 NC_010001.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 3731098 5743376 Cphy_3050 Clostridium phytofermentans ISDg anaerobic ribonucleoside triphosphate reductase YP_001560146.1 3728972 R 357809 CDS YP_001560147.1 160881179 5743377 complement(3731415..3732554) 1 NC_010001.1 TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: cbe:Cbei_4408 carboxynorspermidine decarboxylase; carboxynorspermidine decarboxylase 3732554 5743377 Cphy_3051 Clostridium phytofermentans ISDg carboxynorspermidine decarboxylase YP_001560147.1 3731415 R 357809 CDS YP_001560148.1 160881180 5743378 complement(3732708..3733907) 1 NC_010001.1 PFAM: Saccharopine dehydrogenase; KEGG: bha:BH3957 hypothetical protein; saccharopine dehydrogenase 3733907 5743378 Cphy_3052 Clostridium phytofermentans ISDg saccharopine dehydrogenase YP_001560148.1 3732708 R 357809 CDS YP_001560149.1 160881181 5743379 complement(3733948..3734802) 1 NC_010001.1 TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: cpe:CPE0551 probable agmatinase; agmatinase 3734802 5743379 Cphy_3053 Clostridium phytofermentans ISDg agmatinase YP_001560149.1 3733948 R 357809 CDS YP_001560150.1 160881182 5743380 complement(3734795..3735646) 1 NC_010001.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 3735646 5743380 Cphy_3054 Clostridium phytofermentans ISDg spermidine synthase YP_001560150.1 3734795 R 357809 CDS YP_001560151.1 160881183 5743381 complement(3735685..3737142) 1 NC_010001.1 PFAM: aminotransferase class V; Orn/Lys/Arg decarboxylase major region; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Orn/Lys/Arg decarboxylase domain protein; KEGG: dsy:DSY0236 hypothetical protein; Orn/Lys/Arg decarboxylase major region 3737142 5743381 Cphy_3055 Clostridium phytofermentans ISDg Orn/Lys/Arg decarboxylase major region YP_001560151.1 3735685 R 357809 CDS YP_001560152.1 160881184 5743382 complement(3737655..3739844) 1 NC_010001.1 PFAM: glycoside hydrolase clan GH-D; KEGG: csc:Csac_1118 glycoside hydrolase, clan GH-D; glycoside hydrolase clan GH-D 3739844 5743382 Cphy_3056 Clostridium phytofermentans ISDg glycoside hydrolase clan GH-D YP_001560152.1 3737655 R 357809 CDS YP_001560153.1 160881185 5743383 complement(3740098..3740526) 1 NC_010001.1 PFAM: CBS domain containing protein; KEGG: cdf:CD1356 regulatory protein; hypothetical protein 3740526 5743383 Cphy_3057 Clostridium phytofermentans ISDg hypothetical protein YP_001560153.1 3740098 R 357809 CDS YP_001560154.1 160881186 5743384 complement(3740860..3741432) 1 NC_010001.1 hypothetical protein 3741432 5743384 Cphy_3058 Clostridium phytofermentans ISDg hypothetical protein YP_001560154.1 3740860 R 357809 CDS YP_001560155.1 160881187 5743385 complement(3741851..3742309) 1 NC_010001.1 KEGG: amt:Amet_1218 domain of unknown function DUF1893; hypothetical protein 3742309 5743385 Cphy_3059 Clostridium phytofermentans ISDg hypothetical protein YP_001560155.1 3741851 R 357809 CDS YP_001560156.1 160881188 5743386 complement(3742281..3742823) 1 NC_010001.1 KEGG: cbh:CLC_0541 hypothetical protein; hypothetical protein 3742823 5743386 Cphy_3060 Clostridium phytofermentans ISDg hypothetical protein YP_001560156.1 3742281 R 357809 CDS YP_001560157.1 160881189 5743387 complement(3742826..3743941) 1 NC_010001.1 PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tte:TTE2520 predicted oxidoreductases of the aldo/keto reductase family; aldo/keto reductase 3743941 5743387 Cphy_3061 Clostridium phytofermentans ISDg aldo/keto reductase YP_001560157.1 3742826 R 357809 CDS YP_001560158.1 160881190 5743388 complement(3744339..3745322) 1 NC_010001.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: tte:TTE0576 subtilisin-like serine protease; peptidase S8/S53 subtilisin kexin sedolisin 3745322 5743388 Cphy_3062 Clostridium phytofermentans ISDg peptidase S8/S53 subtilisin kexin sedolisin YP_001560158.1 3744339 R 357809 CDS YP_001560159.1 160881191 5743389 3745713..3746846 1 NC_010001.1 PFAM: peptidase M23B; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: cth:Cthe_0734 peptidase M23B; peptidase M23B 3746846 5743389 Cphy_3063 Clostridium phytofermentans ISDg peptidase M23B YP_001560159.1 3745713 D 357809 CDS YP_001560160.1 160881192 5743390 complement(3747277..3747933) 1 NC_010001.1 hypothetical protein 3747933 5743390 Cphy_3064 Clostridium phytofermentans ISDg hypothetical protein YP_001560160.1 3747277 R 357809 CDS YP_001560161.1 160881193 5743391 complement(3747961..3748224) 1 NC_010001.1 hypothetical protein 3748224 5743391 Cphy_3065 Clostridium phytofermentans ISDg hypothetical protein YP_001560161.1 3747961 R 357809 CDS YP_001560162.1 160881194 5743392 complement(3748299..3750080) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpe:CPE0834 probable ABC transporter; ABC transporter related 3750080 5743392 Cphy_3066 Clostridium phytofermentans ISDg ABC transporter related YP_001560162.1 3748299 R 357809 CDS YP_001560163.1 160881195 5743393 complement(3750058..3751908) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_0829 ABC transporter, ATP-binding protein; ABC transporter 3751908 5743393 Cphy_3067 Clostridium phytofermentans ISDg ABC transporter YP_001560163.1 3750058 R 357809 CDS YP_001560164.1 160881196 5743394 complement(3751920..3752993) 1 NC_010001.1 PFAM: regulatory protein ArsR; KEGG: bay:RBAM_027430 NrsE; ArsR family transcriptional regulator 3752993 5743394 Cphy_3068 Clostridium phytofermentans ISDg ArsR family transcriptional regulator YP_001560164.1 3751920 R 357809 CDS YP_001560165.1 160881197 5743395 complement(3753565..3754962) 1 NC_010001.1 PFAM: polysaccharide deacetylase; KEGG: bsu:BG13184 similar to endo-1,4-beta-xylanase; polysaccharide deacetylase 3754962 5743395 Cphy_3069 Clostridium phytofermentans ISDg polysaccharide deacetylase YP_001560165.1 3753565 R 357809 CDS YP_001560166.1 160881198 5743396 complement(3755455..3756117) 1 NC_010001.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 3756117 5743396 Cphy_3070 Clostridium phytofermentans ISDg V-type ATP synthase subunit D YP_001560166.1 3755455 R 357809 CDS YP_001560167.1 160881199 5743397 complement(3756121..3757503) 1 NC_010001.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 3757503 5743397 Cphy_3071 Clostridium phytofermentans ISDg V-type ATP synthase subunit B YP_001560167.1 3756121 R 357809 CDS YP_001560168.1 160881200 5743398 complement(3757503..3759272) 1 NC_010001.1 PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: cth:Cthe_2267 sodium-transporting two-sector ATPase; H+transporting two-sector ATPase alpha/beta subunit 3759272 5743398 Cphy_3072 Clostridium phytofermentans ISDg H+transporting two-sector ATPase alpha/beta subunit YP_001560168.1 3757503 R 357809 CDS YP_001560169.1 160881201 5743399 complement(3759273..3759608) 1 NC_010001.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit F 3759608 5743399 Cphy_3073 Clostridium phytofermentans ISDg V-type ATP synthase subunit F YP_001560169.1 3759273 R 357809 CDS YP_001560170.1 160881202 5743400 complement(3759601..3760581) 1 NC_010001.1 PFAM: H+transporting two-sector ATPase C (AC39) subunit; KEGG: cth:Cthe_2265 H+-transporting two-sector ATPase, C (AC39) subunit; H+transporting two-sector ATPase C (AC39) subunit 3760581 5743400 Cphy_3074 Clostridium phytofermentans ISDg H+transporting two-sector ATPase C (AC39) subunit YP_001560170.1 3759601 R 357809 CDS YP_001560171.1 160881203 5743401 complement(3760620..3761234) 1 NC_010001.1 PFAM: H+transporting two-sector ATPase E subunit; KEGG: cbf:CLI_2693 V-type ATPase, E subunit; H+transporting two-sector ATPase E subunit 3761234 5743401 Cphy_3075 Clostridium phytofermentans ISDg H+transporting two-sector ATPase E subunit YP_001560171.1 3760620 R 357809 CDS YP_001560172.1 160881204 5743402 complement(3761254..3761766) 1 NC_010001.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 3761766 5743402 Cphy_3076 Clostridium phytofermentans ISDg V-type ATP synthase subunit K YP_001560172.1 3761254 R 357809 CDS YP_001560173.1 160881205 5743403 complement(3761768..3763798) 1 NC_010001.1 PFAM: V-type ATPase 116 kDa subunit; KEGG: cth:Cthe_2262 V-type ATPase, 116 kDa subunit; H(+)-transporting two-sector ATPase 3763798 5743403 Cphy_3077 Clostridium phytofermentans ISDg H(+)-transporting two-sector ATPase YP_001560173.1 3761768 R 357809 CDS YP_001560174.1 160881206 5743164 complement(3763785..3764108) 1 NC_010001.1 hypothetical protein 3764108 5743164 Cphy_3078 Clostridium phytofermentans ISDg hypothetical protein YP_001560174.1 3763785 R 357809 CDS YP_001560175.1 160881207 5743165 complement(3764287..3764658) 1 NC_010001.1 PFAM: protein of unknown function DUF1312; KEGG: aeh:Mlg_0352 hypothetical protein; hypothetical protein 3764658 5743165 Cphy_3079 Clostridium phytofermentans ISDg hypothetical protein YP_001560175.1 3764287 R 357809 CDS YP_001560176.1 160881208 5743166 complement(3764873..3767515) 1 NC_010001.1 KEGG: bsu:BG12861 hypothetical protein; hypothetical protein 3767515 5743166 Cphy_3080 Clostridium phytofermentans ISDg hypothetical protein YP_001560176.1 3764873 R 357809 CDS YP_001560177.1 160881209 5743167 complement(3767612..3771061) 1 NC_010001.1 PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: bfr:BF1741 beta-galactosidase; glycoside hydrolase family protein 3771061 5743167 Cphy_3081 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001560177.1 3767612 R 357809 CDS YP_001560178.1 160881210 5743168 complement(3771562..3771993) 1 NC_010001.1 KEGG: mmq:MmarC5_0860 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 3771993 5743168 Cphy_3082 Clostridium phytofermentans ISDg amino acid-binding ACT domain-containing protein YP_001560178.1 3771562 R 357809 CDS YP_001560179.1 160881211 5743169 complement(3772009..3773280) 1 NC_010001.1 KEGG: mmz:MmarC7_1742 phenylacetate--CoA ligase; phenylacetate--CoA ligase 3773280 5743169 Cphy_3083 Clostridium phytofermentans ISDg phenylacetate--CoA ligase YP_001560179.1 3772009 R 357809 CDS YP_001560180.1 160881212 5743170 complement(3773475..3774659) 1 NC_010001.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: ckl:CKL_1659 predicted transposase; IS605 family transposase OrfB 3774659 5743170 Cphy_3084 Clostridium phytofermentans ISDg IS605 family transposase OrfB YP_001560180.1 3773475 R 357809 CDS YP_001560181.1 160881213 5743172 complement(3774879..3775286) 1 NC_010001.1 PFAM: amino acid-binding ACT domain protein; KEGG: drm:Dred_2883 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 3775286 5743172 Cphy_3086 Clostridium phytofermentans ISDg amino acid-binding ACT domain-containing protein YP_001560181.1 3774879 R 357809 CDS YP_001560182.1 160881214 5743173 complement(3775467..3776042) 1 NC_010001.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: cth:Cthe_0614 pyruvate ferredoxin/flavodoxin oxidoreductase; indolepyruvate ferredoxin oxidoreductase 3776042 5743173 Cphy_3087 Clostridium phytofermentans ISDg indolepyruvate ferredoxin oxidoreductase YP_001560182.1 3775467 R 357809 CDS YP_001560183.1 160881215 5743174 complement(3776055..3777794) 1 NC_010001.1 TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: cth:Cthe_0613 thiamine pyrophosphate enzyme-like TPP-binding; indolepyruvate ferredoxin oxidoreductase subunit alpha 3777794 5743174 Cphy_3088 Clostridium phytofermentans ISDg indolepyruvate ferredoxin oxidoreductase subunit alpha YP_001560183.1 3776055 R 357809 CDS YP_001560184.1 160881216 5743175 3778244..3778741 1 NC_010001.1 PFAM: protein of unknown function DUF1113; KEGG: cdf:CD2159 hypothetical protein; hypothetical protein 3778741 5743175 Cphy_3089 Clostridium phytofermentans ISDg hypothetical protein YP_001560184.1 3778244 D 357809 CDS YP_001560185.1 160881217 5743176 3778886..3780412 1 NC_010001.1 PFAM: Na+/solute symporter; KEGG: cth:Cthe_0612 SSS sodium solute transporter superfamily; Na+/solute symporter 3780412 5743176 Cphy_3090 Clostridium phytofermentans ISDg Na+/solute symporter YP_001560185.1 3778886 D 357809 CDS YP_001560186.1 160881218 5743177 complement(3780587..3781900) 1 NC_010001.1 KEGG: mmq:MmarC5_1515 phenylacetate--CoA ligase; phenylacetate--CoA ligase 3781900 5743177 Cphy_3091 Clostridium phytofermentans ISDg phenylacetate--CoA ligase YP_001560186.1 3780587 R 357809 CDS YP_001560187.1 160881219 5743178 3782185..3782493 1 NC_010001.1 KEGG: mmu:100039486 similar to keratin associated protein 6-2; keratin associated protein 6-2-like protein 3782493 5743178 Cphy_3092 Clostridium phytofermentans ISDg keratin associated protein 6-2-like protein YP_001560187.1 3782185 D 357809 CDS YP_001560188.1 160881220 5743179 3782954..3784057 1 NC_010001.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 3784057 5743179 Cphy_3093 Clostridium phytofermentans ISDg chorismate synthase YP_001560188.1 3782954 D 357809 CDS YP_001560189.1 160881221 5743180 complement(3784185..3785759) 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY3380 hypothetical protein; methyl-accepting chemotaxis sensory transducer 3785759 5743180 Cphy_3094 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001560189.1 3784185 R 357809 CDS YP_001560190.1 160881222 5743181 complement(3786125..3786793) 1 NC_010001.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cth:Cthe_3159 transcriptional regulator, GntR family; GntR family transcriptional regulator 3786793 5743181 Cphy_3095 Clostridium phytofermentans ISDg GntR family transcriptional regulator YP_001560190.1 3786125 R 357809 CDS YP_001560191.1 160881223 5743182 complement(3786901..3788064) 1 NC_010001.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: mtp:Mthe_0549 isocitrate dehydrogenase (NAD(+)); isocitrate dehydrogenase (NAD(+)) 3788064 5743182 Cphy_3096 Clostridium phytofermentans ISDg isocitrate dehydrogenase (NAD(+)) YP_001560191.1 3786901 R 357809 CDS YP_001560192.1 160881224 5743183 complement(3788120..3789532) 1 NC_010001.1 PFAM: pyruvate carboxyltransferase; KEGG: cth:Cthe_3157 pyruvate carboxyltransferase; pyruvate carboxyltransferase 3789532 5743183 Cphy_3097 Clostridium phytofermentans ISDg pyruvate carboxyltransferase YP_001560192.1 3788120 R 357809 CDS YP_001560193.1 160881225 5743184 3789949..3790422 1 NC_010001.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: amt:Amet_3812 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3790422 5743184 Cphy_3098 Clostridium phytofermentans ISDg ECF subfamily RNA polymerase sigma-24 factor YP_001560193.1 3789949 D 357809 CDS YP_001560194.1 160881226 5743185 3790419..3790856 1 NC_010001.1 KEGG: amt:Amet_3811 hypothetical protein; hypothetical protein 3790856 5743185 Cphy_3099 Clostridium phytofermentans ISDg hypothetical protein YP_001560194.1 3790419 D 357809 CDS YP_001560195.1 160881227 5743186 complement(3790952..3791431) 1 NC_010001.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 3791431 mgsA 5743186 mgsA Clostridium phytofermentans ISDg methylglyoxal synthase YP_001560195.1 3790952 R 357809 CDS YP_001560196.1 160881228 5743187 3791765..3792694 1 NC_010001.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 3792694 5743187 Cphy_3101 Clostridium phytofermentans ISDg carbamate kinase YP_001560196.1 3791765 D 357809 CDS YP_001560197.1 160881229 5743188 complement(3792846..3793784) 1 NC_010001.1 PFAM: glycosyl transferase family 2; KEGG: spd:SPD_0321 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 3793784 5743188 Cphy_3102 Clostridium phytofermentans ISDg glycosyl transferase family protein YP_001560197.1 3792846 R 357809 CDS YP_001560198.1 160881230 5743189 complement(3793820..3794788) 1 NC_010001.1 PFAM: glycosyl transferase family 2; KEGG: spt:SPA0786 rhamnosyltransferase; glycosyl transferase family protein 3794788 5743189 Cphy_3103 Clostridium phytofermentans ISDg glycosyl transferase family protein YP_001560198.1 3793820 R 357809 CDS YP_001560199.1 160881231 5743190 complement(3794965..3796023) 1 NC_010001.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: spi:MGAS10750_Spy0250 oligopeptide transport ATP-binding protein OppF; ABC transporter 3796023 5743190 Cphy_3104 Clostridium phytofermentans ISDg ABC transporter YP_001560199.1 3794965 R 357809 CDS YP_001560200.1 160881232 5743191 complement(3796156..3797211) 1 NC_010001.1 KEGG: spi:MGAS10750_Spy0249 oligopeptide transport ATP-binding protein OppD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 3797211 5743191 Cphy_3105 Clostridium phytofermentans ISDg oligopeptide/dipeptide ABC transporter ATPase YP_001560200.1 3796156 R 357809 CDS YP_001560201.1 160881233 5743192 complement(3797424..3798398) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spi:MGAS10750_Spy0248 oligopeptide transport system permease OppC; binding-protein-dependent transport system inner membrane protein 3798398 5743192 Cphy_3106 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001560201.1 3797424 R 357809 CDS YP_001560202.1 160881234 5743193 complement(3798399..3799337) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sae:NWMN_0856 oligopeptide transport system permease; binding-protein-dependent transport system inner membrane protein 3799337 5743193 Cphy_3107 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001560202.1 3798399 R 357809 CDS YP_001560203.1 160881235 5743194 complement(3799364..3801211) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 5; KEGG: spi:MGAS10750_Spy0246 oligopeptide-binding protein OppA; extracellular solute-binding protein 3801211 5743194 Cphy_3108 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001560203.1 3799364 R 357809 CDS YP_001560204.1 160881236 5743195 complement(3802071..3803957) 1 NC_010001.1 PFAM: glycoside hydrolase family 25; KEGG: cbf:CLI_0852 glycosyl hydrolase, family 25; glycoside hydrolase family protein 3803957 5743195 Cphy_3109 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001560204.1 3802071 R 357809 CDS YP_001560205.1 160881237 5743196 complement(3803988..3804848) 1 NC_010001.1 KEGG: swo:Swol_0934 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 3804848 5743196 Cphy_3110 Clostridium phytofermentans ISDg 5,10-methylenetetrahydrofolate reductase YP_001560205.1 3803988 R 357809 CDS YP_001560206.1 160881238 5743197 complement(3804902..3806074) 1 NC_010001.1 PFAM: sodium/hydrogen exchanger; KEGG: cdf:CD0657 Na(+)/H(+) antiporter; sodium/hydrogen exchanger 3806074 5743197 Cphy_3111 Clostridium phytofermentans ISDg sodium/hydrogen exchanger YP_001560206.1 3804902 R 357809 CDS YP_001560207.1 160881239 5743198 3806563..3807795 1 NC_010001.1 PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: cbe:Cbei_2232 serine dehydratase alpha chain; serine dehydratase alpha chain 3807795 5743198 Cphy_3112 Clostridium phytofermentans ISDg serine dehydratase alpha chain YP_001560207.1 3806563 D 357809 CDS YP_001560208.1 160881240 5743199 complement(3807982..3809040) 1 NC_010001.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: cdf:CD2120 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 3809040 5743199 Cphy_3113 Clostridium phytofermentans ISDg 2-nitropropane dioxygenase YP_001560208.1 3807982 R 357809 CDS YP_001560209.1 160881241 5743200 complement(3809245..3809895) 1 NC_010001.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cbe:Cbei_3741 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase 3809895 5743200 Cphy_3114 Clostridium phytofermentans ISDg HAD family hydrolase YP_001560209.1 3809245 R 357809 CDS YP_001560210.1 160881242 5743201 complement(3810153..3811973) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0028 ABC transporter, ATP-binding protein, HlyB family; ABC transporter 3811973 5743201 Cphy_3115 Clostridium phytofermentans ISDg ABC transporter YP_001560210.1 3810153 R 357809 CDS YP_001560211.1 160881243 5743202 complement(3811948..3813780) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpr:CPR_0817 antibiotic ABC transporter, ATP-binding protein; ABC transporter 3813780 5743202 Cphy_3116 Clostridium phytofermentans ISDg ABC transporter YP_001560211.1 3811948 R 357809 CDS YP_001560212.1 160881244 5743203 complement(3813933..3814961) 1 NC_010001.1 KEGG: tde:TDE0032 histidine kinase-related ATPase; signal transduction histidine kinase regulating citrate/malate metabolism 3814961 5743203 Cphy_3117 Clostridium phytofermentans ISDg signal transduction histidine kinase regulating citrate/malate metabolism YP_001560212.1 3813933 R 357809 CDS YP_001560213.1 160881245 5743204 complement(3814958..3815668) 1 NC_010001.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: tde:TDE0033 DNA-binding response regulator; LytTR family two component transcriptional regulator 3815668 5743204 Cphy_3118 Clostridium phytofermentans ISDg LytTR family two component transcriptional regulator YP_001560213.1 3814958 R 357809 CDS YP_001560214.1 160881246 5743205 complement(3816314..3816871) 1 NC_010001.1 KEGG: cbo:CBO2129 hypothetical protein; hypothetical protein 3816871 5743205 Cphy_3119 Clostridium phytofermentans ISDg hypothetical protein YP_001560214.1 3816314 R 357809 CDS YP_001560215.1 160881247 5743206 3817190..3818044 1 NC_010001.1 KEGG: cbe:Cbei_2369 AAA ATPase; ATPase AAA 3818044 5743206 Cphy_3120 Clostridium phytofermentans ISDg ATPase AAA YP_001560215.1 3817190 D 357809 CDS YP_001560216.1 160881248 5743207 complement(3818169..3818723) 1 NC_010001.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_1771 rubrerythrin; rubrerythrin 3818723 5743207 Cphy_3121 Clostridium phytofermentans ISDg rubrerythrin YP_001560216.1 3818169 R 357809 CDS YP_001560217.1 160881249 5743208 complement(3819042..3819887) 1 NC_010001.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 3819887 5743208 Cphy_3122 Clostridium phytofermentans ISDg 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_001560217.1 3819042 R 357809 CDS YP_001560218.1 160881250 5743209 complement(3819889..3821559) 1 NC_010001.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cbe:Cbei_4042 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 3821559 5743209 Cphy_3123 Clostridium phytofermentans ISDg pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_001560218.1 3819889 R 357809 CDS YP_001560219.1 160881251 5743210 complement(3822207..3822668) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ckl:CKL_3663 hypothetical protein; N-acetyltransferase GCN5 3822668 5743210 Cphy_3124 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001560219.1 3822207 R 357809 CDS YP_001560220.1 160881252 5743211 complement(3822835..3823311) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi02251 hypothetical protein; N-acetyltransferase GCN5 3823311 5743211 Cphy_3125 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001560220.1 3822835 R 357809 CDS YP_001560221.1 160881253 5743213 complement(3824057..3824749) 1 NC_010001.1 PFAM: metallophosphoesterase; KEGG: cbe:Cbei_0077 metallophosphoesterase; metallophosphoesterase 3824749 5743213 Cphy_3127 Clostridium phytofermentans ISDg metallophosphoesterase YP_001560221.1 3824057 R 357809 CDS YP_001560222.1 160881254 5743214 complement(3825009..3826232) 1 NC_010001.1 PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: xla:100037187 hypothetical protein LOC100037187; UTP-glucose-1-phosphate uridylyltransferase 3826232 5743214 Cphy_3128 Clostridium phytofermentans ISDg UTP-glucose-1-phosphate uridylyltransferase YP_001560222.1 3825009 R 357809 CDS YP_001560223.1 160881255 5743215 complement(3826384..3826854) 1 NC_010001.1 KEGG: lla:L65707 unknown protein; hypothetical protein 3826854 5743215 Cphy_3129 Clostridium phytofermentans ISDg hypothetical protein YP_001560223.1 3826384 R 357809 CDS YP_001560224.1 160881256 5743216 complement(3826900..3827478) 1 NC_010001.1 hypothetical protein 3827478 5743216 Cphy_3130 Clostridium phytofermentans ISDg hypothetical protein YP_001560224.1 3826900 R 357809 CDS YP_001560225.1 160881257 5743217 complement(3827961..3828224) 1 NC_010001.1 hypothetical protein 3828224 5743217 Cphy_3131 Clostridium phytofermentans ISDg hypothetical protein YP_001560225.1 3827961 R 357809 CDS YP_001560226.1 160881258 5743218 complement(3828481..3829326) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: dsy:DSY0076 hypothetical protein; AraC family transcriptional regulator 3829326 5743218 Cphy_3132 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001560226.1 3828481 R 357809 CDS YP_001560227.1 160881259 5743219 complement(3829445..3829912) 1 NC_010001.1 PFAM: NUDIX hydrolase; KEGG: mac:MA1648 MutT/NUDIX family protein; NUDIX hydrolase 3829912 5743219 Cphy_3133 Clostridium phytofermentans ISDg NUDIX hydrolase YP_001560227.1 3829445 R 357809 CDS YP_001560228.1 160881260 5743220 complement(3829935..3830465) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cpf:CPF_1157 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3830465 5743220 Cphy_3134 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001560228.1 3829935 R 357809 CDS YP_001560229.1 160881261 5743221 complement(3830555..3831055) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tth:TTC0848 acetyltransferase; N-acetyltransferase GCN5 3831055 5743221 Cphy_3135 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001560229.1 3830555 R 357809 CDS YP_001560230.1 160881262 5743222 complement(3831211..3831648) 1 NC_010001.1 PFAM: NUDIX hydrolase; KEGG: smu:SMU.561c hydrolase (MutT family); NUDIX hydrolase 3831648 5743222 Cphy_3136 Clostridium phytofermentans ISDg NUDIX hydrolase YP_001560230.1 3831211 R 357809 CDS YP_001560231.1 160881263 5743223 complement(3831670..3832056) 1 NC_010001.1 hypothetical protein 3832056 5743223 Cphy_3137 Clostridium phytofermentans ISDg hypothetical protein YP_001560231.1 3831670 R 357809 CDS YP_001560232.1 160881264 5743224 complement(3832542..3833387) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: cdf:CD1883 AraC-family transcriptional regulator; AraC family transcriptional regulator 3833387 5743224 Cphy_3138 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001560232.1 3832542 R 357809 CDS YP_001560233.1 160881265 5743225 complement(3833475..3834014) 1 NC_010001.1 hypothetical protein 3834014 5743225 Cphy_3139 Clostridium phytofermentans ISDg hypothetical protein YP_001560233.1 3833475 R 357809 CDS YP_001560234.1 160881266 5743226 complement(3834071..3834538) 1 NC_010001.1 KEGG: cpf:CPF_0144 hypothetical protein; hypothetical protein 3834538 5743226 Cphy_3140 Clostridium phytofermentans ISDg hypothetical protein YP_001560234.1 3834071 R 357809 CDS YP_001560235.1 160881267 5743227 complement(3834722..3835270) 1 NC_010001.1 KEGG: bth:BT_2346 iron-sulfur cluster-binding protein; (Fe-S)-binding protein 3835270 5743227 Cphy_3141 Clostridium phytofermentans ISDg (Fe-S)-binding protein YP_001560235.1 3834722 R 357809 CDS YP_001560236.1 160881268 5743228 complement(3835337..3836242) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: cbh:CLC_0768 transcriptional regulator, AraC family; AraC family transcriptional regulator 3836242 5743228 Cphy_3142 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001560236.1 3835337 R 357809 CDS YP_001560237.1 160881269 5743229 complement(3837075..3838022) 1 NC_010001.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 3838022 5743229 Cphy_3143 Clostridium phytofermentans ISDg adenosine deaminase YP_001560237.1 3837075 R 357809 CDS YP_001560238.1 160881270 5743230 3838619..3839500 1 NC_010001.1 KEGG: ssv:SSU98_1061 hypothetical protein; hypothetical protein 3839500 5743230 Cphy_3144 Clostridium phytofermentans ISDg hypothetical protein YP_001560238.1 3838619 D 357809 CDS YP_001560239.1 160881271 5743231 3839603..3840919 1 NC_010001.1 PFAM: integrase family protein; KEGG: tte:TTE2127 integrase; integrase family protein 3840919 5743231 Cphy_3145 Clostridium phytofermentans ISDg integrase family protein YP_001560239.1 3839603 D 357809 CDS YP_001560240.1 160881272 5743232 complement(3841155..3842027) 1 NC_010001.1 KEGG: mla:Mlab_1274 nitrogenase subunit NifH (ATPase)-like protein; hypothetical protein 3842027 5743232 Cphy_3146 Clostridium phytofermentans ISDg hypothetical protein YP_001560240.1 3841155 R 357809 CDS YP_001560241.1 160881273 5743233 complement(3842078..3842389) 1 NC_010001.1 KEGG: spb:M28_Spy1740 translation initiation inhibitor; translation initiation inhibitor 3842389 5743233 Cphy_3147 Clostridium phytofermentans ISDg translation initiation inhibitor YP_001560241.1 3842078 R 357809 CDS YP_001560242.1 160881274 5743234 complement(3842841..3843788) 1 NC_010001.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: cac:CAC3514 reverse transcriptase/maturase family protein; RNA-directed DNA polymerase 3843788 5743234 Cphy_3148 Clostridium phytofermentans ISDg RNA-directed DNA polymerase YP_001560242.1 3842841 R 357809 CDS YP_001560243.1 160881275 5743236 complement(3844123..3844839) 1 NC_010001.1 PFAM: cyclic nucleotide-binding; KEGG: cth:Cthe_0034 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein 3844839 5743236 Cphy_3149 Clostridium phytofermentans ISDg cyclic nucleotide-binding protein YP_001560243.1 3844123 R 357809 CDS YP_001560244.1 160881276 5743237 3845084..3845812 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cth:Cthe_0035 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 3845812 5743237 Cphy_3150 Clostridium phytofermentans ISDg 4Fe-4S ferredoxin YP_001560244.1 3845084 D 357809 CDS YP_001560245.1 160881277 5743238 3846872..3847669 1 NC_010001.1 KEGG: bce:BC2977 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 3847669 5743238 Cphy_3151 Clostridium phytofermentans ISDg pyrroline-5-carboxylate reductase YP_001560245.1 3846872 D 357809 CDS YP_001560246.1 160881278 5743239 complement(3847835..3848593) 1 NC_010001.1 PFAM: Methyltransferase type 11; KEGG: mma:MM_0449 SAM-dependent methyltransferase; methyltransferase type 11 3848593 5743239 Cphy_3152 Clostridium phytofermentans ISDg methyltransferase type 11 YP_001560246.1 3847835 R 357809 CDS YP_001560247.1 160881279 5743240 complement(3848911..3849357) 1 NC_010001.1 PFAM: RbsD or FucU transport; KEGG: cpf:CPF_1050 fucose operon protein FucU; transport protein RbsD/FucU 3849357 5743240 Cphy_3153 Clostridium phytofermentans ISDg transport protein RbsD/FucU YP_001560247.1 3848911 R 357809 CDS YP_001560248.1 160881280 5743241 complement(3849506..3850975) 1 NC_010001.1 PFAM: carbohydrate kinase FGGY; KEGG: cpf:CPF_1049 L-fuculokinase; carbohydrate kinase FGGY 3850975 5743241 Cphy_3154 Clostridium phytofermentans ISDg carbohydrate kinase FGGY YP_001560248.1 3849506 R 357809 CDS YP_001560249.1 160881281 5743242 complement(3850979..3852772) 1 NC_010001.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 3852772 fucI 5743242 fucI Clostridium phytofermentans ISDg L-fucose isomerase YP_001560249.1 3850979 R 357809 CDS YP_001560250.1 160881282 5743243 3853035..3853886 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: cpf:CPF_1047 transcriptional regulator, AraC family; AraC family transcriptional regulator 3853886 5743243 Cphy_3156 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001560250.1 3853035 D 357809 CDS YP_001560251.1 160881283 5743244 complement(3854096..3854650) 1 NC_010001.1 hypothetical protein 3854650 5743244 Cphy_3157 Clostridium phytofermentans ISDg hypothetical protein YP_001560251.1 3854096 R 357809 CDS YP_001560252.1 160881284 5743245 complement(3855356..3857410) 1 NC_010001.1 PFAM: glycosyl hydrolase 67 C-teriminal domain protein; Glycosyl hydrolase 67 middle domain protein; KEGG: bha:BH1061 alpha-glucuronidase; alpha-glucuronidase 3857410 5743245 Cphy_3158 Clostridium phytofermentans ISDg alpha-glucuronidase YP_001560252.1 3855356 R 357809 CDS YP_001560253.1 160881285 5743246 3857841..3858731 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_4840 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 3858731 5743246 Cphy_3159 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001560253.1 3857841 D 357809 CDS YP_001560254.1 160881286 5743247 3858979..3862536 1 NC_010001.1 PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: cth:Cthe_2197 carbohydrate binding family 6; glycoside hydrolase family protein 3862536 5743247 Cphy_3160 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001560254.1 3858979 D 357809 CDS YP_001560255.1 160881287 5743248 complement(3863088..3863939) 1 NC_010001.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: ckl:CKL_2513 hypothetical protein; degV family protein 3863939 5743248 Cphy_3161 Clostridium phytofermentans ISDg degV family protein YP_001560255.1 3863088 R 357809 CDS YP_001560256.1 160881288 5743249 complement(3864223..3864546) 1 NC_010001.1 KEGG: cbe:Cbei_4073 regulatory protein, LuxR; regulatory protein LuxR 3864546 5743249 Cphy_3162 Clostridium phytofermentans ISDg regulatory protein LuxR YP_001560256.1 3864223 R 357809 CDS YP_001560257.1 160881289 5743250 complement(3864737..3865729) 1 NC_010001.1 KEGG: rxy:Rxyl_1168 peptidase M29, aminopeptidase II; leucyl aminopeptidase 3865729 5743250 Cphy_3163 Clostridium phytofermentans ISDg leucyl aminopeptidase YP_001560257.1 3864737 R 357809 CDS YP_001560258.1 160881290 5743251 3865992..3866324 1 NC_010001.1 PFAM: transcriptional regulator PadR family protein; KEGG: ctc:CTC00619 regulatory protein (PadR family); PadR-like family transcriptional regulator 3866324 5743251 Cphy_3164 Clostridium phytofermentans ISDg PadR-like family transcriptional regulator YP_001560258.1 3865992 D 357809 CDS YP_001560259.1 160881291 5743252 3866331..3866879 1 NC_010001.1 KEGG: ctc:CTC00620 hypothetical protein; hypothetical protein 3866879 5743252 Cphy_3165 Clostridium phytofermentans ISDg hypothetical protein YP_001560259.1 3866331 D 357809 CDS YP_001560260.1 160881292 5743253 complement(3867087..3867419) 1 NC_010001.1 PFAM: branched-chain amino acid transport; KEGG: bsu:BG11916 branched-chain amino acid transport protein; branched-chain amino acid transport 3867419 5743253 Cphy_3166 Clostridium phytofermentans ISDg branched-chain amino acid transport YP_001560260.1 3867087 R 357809 CDS YP_001560261.1 160881293 5743254 complement(3867410..3868087) 1 NC_010001.1 PFAM: AzlC family protein; KEGG: bsu:BG11915 branched-chain amino acid transport protein; AzlC family protein 3868087 5743254 Cphy_3167 Clostridium phytofermentans ISDg AzlC family protein YP_001560261.1 3867410 R 357809 CDS YP_001560262.1 160881294 5743255 complement(3868097..3868708) 1 NC_010001.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: cbh:CLC_2103 O-acetyltransferase family protein; hexapaptide repeat-containing transferase 3868708 5743255 Cphy_3168 Clostridium phytofermentans ISDg hexapaptide repeat-containing transferase YP_001560262.1 3868097 R 357809 CDS YP_001560263.1 160881295 5743256 complement(3868776..3869471) 1 NC_010001.1 KEGG: blo:BL1242 hypothetical protein; hypothetical protein 3869471 5743256 Cphy_3169 Clostridium phytofermentans ISDg hypothetical protein YP_001560263.1 3868776 R 357809 CDS YP_001560264.1 160881296 5743257 complement(3869461..3870927) 1 NC_010001.1 KEGG: llm:llmg_2248 abortive phage resistance; abortive phage resistance 3870927 5743257 Cphy_3170 Clostridium phytofermentans ISDg abortive phage resistance YP_001560264.1 3869461 R 357809 CDS YP_001560265.1 160881297 5743258 complement(3870966..3872483) 1 NC_010001.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: sfu:Sfum_0306 2-isopropylmalate synthase; 2-isopropylmalate synthase 3872483 5743258 Cphy_3171 Clostridium phytofermentans ISDg 2-isopropylmalate synthase YP_001560265.1 3870966 R 357809 CDS YP_001560266.1 160881298 5743259 complement(3873050..3874426) 1 NC_010001.1 catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta 3874426 5743259 Cphy_3172 Clostridium phytofermentans ISDg tryptophan synthase subunit beta YP_001560266.1 3873050 R 357809 CDS YP_001560267.1 160881299 5743260 complement(3874914..3876260) 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_2056 MATE efflux family protein; MATE efflux family protein 3876260 5743260 Cphy_3173 Clostridium phytofermentans ISDg MATE efflux family protein YP_001560267.1 3874914 R 357809 CDS YP_001560268.1 160881300 5743262 3877669..3878511 1 NC_010001.1 PFAM: transcription activator effector binding; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_2042 transcription activator, effector binding; AraC family transcriptional regulator 3878511 5743262 Cphy_3174 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001560268.1 3877669 D 357809 CDS YP_001560269.1 160881301 5743263 complement(3878837..3879739) 1 NC_010001.1 PFAM: Integrase catalytic region; KEGG: cbe:Cbei_0719 integrase, catalytic region; integrase catalytic region 3879739 5743263 Cphy_3175 Clostridium phytofermentans ISDg integrase catalytic region YP_001560269.1 3878837 R 357809 CDS YP_001560270.1 160881302 5743264 complement(3879814..3880500) 1 NC_010001.1 PFAM: transposase IS3/IS911 family protein; KEGG: lga:LGAS_1507 transposase; transposase IS3/IS911 family protein 3880500 5743264 Cphy_3176 Clostridium phytofermentans ISDg transposase IS3/IS911 family protein YP_001560270.1 3879814 R 357809 CDS YP_001560271.1 160881303 5743265 complement(3880838..3881785) 1 NC_010001.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: cth:Cthe_0568 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 3881785 5743265 Cphy_3177 Clostridium phytofermentans ISDg methionyl-tRNA formyltransferase YP_001560271.1 3880838 R 357809 CDS YP_001560272.1 160881304 5743266 3882397..3882762 1 NC_010001.1 hypothetical protein 3882762 5743266 Cphy_3178 Clostridium phytofermentans ISDg hypothetical protein YP_001560272.1 3882397 D 357809 CDS YP_001560273.1 160881305 5743267 3882857..3883609 1 NC_010001.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bha:BH0355 hypothetical protein; methyltransferase type 11 3883609 5743267 Cphy_3179 Clostridium phytofermentans ISDg methyltransferase type 11 YP_001560273.1 3882857 D 357809 CDS YP_001560274.1 160881306 5743268 3883666..3884091 1 NC_010001.1 KEGG: dsy:DSY1735 hypothetical protein; hypothetical protein 3884091 5743268 Cphy_3180 Clostridium phytofermentans ISDg hypothetical protein YP_001560274.1 3883666 D 357809 CDS YP_001560275.1 160881307 5743269 3884183..3885061 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: dsy:DSY1233 hypothetical protein; AraC family transcriptional regulator 3885061 5743269 Cphy_3181 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001560275.1 3884183 D 357809 CDS YP_001560276.1 160881308 5743270 3885058..3885468 1 NC_010001.1 PFAM: Domain of unknown function DUF1905; KEGG: dsy:DSY1232 hypothetical protein; hypothetical protein 3885468 5743270 Cphy_3182 Clostridium phytofermentans ISDg hypothetical protein YP_001560276.1 3885058 D 357809 CDS YP_001560277.1 160881309 5743271 3885446..3885646 1 NC_010001.1 KEGG: dsy:DSY1232 hypothetical protein; hypothetical protein 3885646 5743271 Cphy_3183 Clostridium phytofermentans ISDg hypothetical protein YP_001560277.1 3885446 D 357809 CDS YP_001560278.1 160881310 5743273 3885973..3886284 1 NC_010001.1 KEGG: bcz:pE33L466_0246 hypothetical protein; hypothetical protein 3886284 5743273 Cphy_3185 Clostridium phytofermentans ISDg hypothetical protein YP_001560278.1 3885973 D 357809 CDS YP_001560279.1 160881311 5743274 3886259..3886846 1 NC_010001.1 KEGG: rca:Rcas_0978 hypothetical protein; hypothetical protein 3886846 5743274 Cphy_3186 Clostridium phytofermentans ISDg hypothetical protein YP_001560279.1 3886259 D 357809 CDS YP_001560280.1 160881312 5743275 3887285..3887860 1 NC_010001.1 KEGG: cth:Cthe_0378 hypothetical protein; hypothetical protein 3887860 5743275 Cphy_3187 Clostridium phytofermentans ISDg hypothetical protein YP_001560280.1 3887285 D 357809 CDS YP_001560281.1 160881313 5743276 3888123..3888683 1 NC_010001.1 hypothetical protein 3888683 5743276 Cphy_3188 Clostridium phytofermentans ISDg hypothetical protein YP_001560281.1 3888123 D 357809 CDS YP_001560282.1 160881314 5743277 3888680..3888856 1 NC_010001.1 hypothetical protein 3888856 5743277 Cphy_3189 Clostridium phytofermentans ISDg hypothetical protein YP_001560282.1 3888680 D 357809 CDS YP_001560283.1 160881315 5743278 3888857..3889234 1 NC_010001.1 hypothetical protein 3889234 5743278 Cphy_3190 Clostridium phytofermentans ISDg hypothetical protein YP_001560283.1 3888857 D 357809 CDS YP_001560284.1 160881316 5743279 3889238..3890254 1 NC_010001.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: btk:BT9727_3018 conserved hypothetical protein, possible microcin C7 self-immunity protein; peptidase U61 LD-carboxypeptidase A 3890254 5743279 Cphy_3191 Clostridium phytofermentans ISDg peptidase U61 LD-carboxypeptidase A YP_001560284.1 3889238 D 357809 CDS YP_001560285.1 160881317 5743280 3890403..3890927 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: wsu:WS1543 conserved hypothetical protein-acetyltransferase, including N-acetylase of ribosomal proteins; N-acetyltransferase GCN5 3890927 5743280 Cphy_3192 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001560285.1 3890403 D 357809 CDS YP_001560286.1 160881318 5743281 3890943..3891785 1 NC_010001.1 KEGG: blo:BL0186 possible esterase; esterase 3891785 5743281 Cphy_3193 Clostridium phytofermentans ISDg esterase YP_001560286.1 3890943 D 357809 CDS YP_001560287.1 160881319 5743282 3892065..3892574 1 NC_010001.1 hypothetical protein 3892574 5743282 Cphy_3194 Clostridium phytofermentans ISDg hypothetical protein YP_001560287.1 3892065 D 357809 CDS YP_001560288.1 160881320 5743283 3892747..3893268 1 NC_010001.1 KEGG: bfr:BF1721 hypothetical protein; hypothetical protein 3893268 5743283 Cphy_3195 Clostridium phytofermentans ISDg hypothetical protein YP_001560288.1 3892747 D 357809 CDS YP_001560289.1 160881321 5743284 3893327..3894181 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3894181 5743284 Cphy_3196 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001560289.1 3893327 D 357809 CDS YP_001560290.1 160881322 5743285 3894375..3895118 1 NC_010001.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mba:Mbar_A2327 methylase; methyltransferase type 11 3895118 5743285 Cphy_3197 Clostridium phytofermentans ISDg methyltransferase type 11 YP_001560290.1 3894375 D 357809 CDS YP_001560291.1 160881323 5743286 complement(3895264..3895749) 1 NC_010001.1 PFAM: TM2 domain containing protein?; KEGG: ddi:DDBDRAFT_0204471 hypothetical protein; TM2 domain-containing protein 3895749 5743286 Cphy_3198 Clostridium phytofermentans ISDg TM2 domain-containing protein YP_001560291.1 3895264 R 357809 CDS YP_001560292.1 160881324 5741977 complement(3895840..3896226) 1 NC_010001.1 hypothetical protein 3896226 5741977 Cphy_3199 Clostridium phytofermentans ISDg hypothetical protein YP_001560292.1 3895840 R 357809 CDS YP_001560293.1 160881325 5741978 complement(3896293..3897282) 1 NC_010001.1 PFAM: aminoglycoside phosphotransferase; KEGG: syn:sll1119 hypothetical protein; aminoglycoside phosphotransferase 3897282 5741978 Cphy_3200 Clostridium phytofermentans ISDg aminoglycoside phosphotransferase YP_001560293.1 3896293 R 357809 CDS YP_001560294.1 160881326 5741979 complement(3897624..3898055) 1 NC_010001.1 KEGG: ckl:CKL_4052 hypothetical protein; hypothetical protein 3898055 5741979 Cphy_3201 Clostridium phytofermentans ISDg hypothetical protein YP_001560294.1 3897624 R 357809 CDS YP_001560295.1 160881327 5741980 complement(3898410..3900641) 1 NC_010001.1 PFAM: glycoside hydrolase family 5; cellulose-binding family II; KEGG: bha:BH0603 endo-beta-1,4-glucanase (celulase B); cellulase 3900641 5741980 Cphy_3202 Clostridium phytofermentans ISDg cellulase YP_001560295.1 3898410 R 357809 CDS YP_001560296.1 160881328 5741981 complement(3900878..3904963) 1 NC_010001.1 KEGG: ehi:82.t00025 viral A-type inclusion protein repeat, Pfam: Nha1_C DUF148 ERM Prefoldin_2 WXG100 Vicilin_N TBPIP Myosin_tail_1 Filament YscO Bacillus_HBL EzrA DUF948 Rab5-bind Laminin_I MpPF2 Vps51 MSG Spectrin LMP PROSITE: GLU_RICH LYS_RICH; hypothetical protein 3904963 5741981 Cphy_3203 Clostridium phytofermentans ISDg hypothetical protein YP_001560296.1 3900878 R 357809 CDS YP_001560297.1 160881329 5741982 complement(3905211..3905993) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: lca:LSEI_2784 predicted acetyltransferase; N-acetyltransferase GCN5 3905993 5741982 Cphy_3204 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001560297.1 3905211 R 357809 CDS YP_001560298.1 160881330 5741983 complement(3906062..3907021) 1 NC_010001.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: tte:TTE1617 glycerol 3-phosphate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein 3907021 5741983 Cphy_3205 Clostridium phytofermentans ISDg NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein YP_001560298.1 3906062 R 357809 CDS YP_001560299.1 160881331 5741984 complement(3907719..3909908) 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: csc:Csac_2452 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3909908 5741984 Cphy_3206 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001560299.1 3907719 R 357809 CDS YP_001560300.1 160881332 5741985 complement(3910130..3911275) 1 NC_010001.1 PFAM: glycoside hydrolase family 8; KEGG: bha:BH2105 xylanase Y; glycoside hydrolase family protein 3911275 5741985 Cphy_3207 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001560300.1 3910130 R 357809 CDS YP_001560301.1 160881333 5741986 complement(3911468..3912373) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2113 ABC transporter (permease); binding-protein-dependent transport system inner membrane protein 3912373 5741986 Cphy_3208 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001560301.1 3911468 R 357809 CDS YP_001560302.1 160881334 5741987 complement(3912465..3913424) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2112 transmembrane lipoprotein; binding-protein-dependent transport system inner membrane protein 3913424 5741987 Cphy_3209 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001560302.1 3912465 R 357809 CDS YP_001560303.1 160881335 5741988 complement(3913601..3915310) 1 NC_010001.1 KEGG: bha:BH2111 multiple sugar transport system substrate-binding protein; multiple sugar transport system substrate-binding protein 3915310 5741988 Cphy_3210 Clostridium phytofermentans ISDg multiple sugar transport system substrate-binding protein YP_001560303.1 3913601 R 357809 CDS YP_001560304.1 160881336 5741989 complement(3915499..3917145) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bha:BH2109 hypothetical protein; two component AraC family transcriptional regulator 3917145 5741989 Cphy_3211 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001560304.1 3915499 R 357809 CDS YP_001560305.1 160881337 5741990 complement(3917186..3918976) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: bha:BH2110 hypothetical protein; histidine kinase internal region 3918976 5741990 Cphy_3212 Clostridium phytofermentans ISDg histidine kinase internal region YP_001560305.1 3917186 R 357809 CDS YP_001560306.1 160881338 5741991 3919325..3919876 1 NC_010001.1 hypothetical protein 3919876 5741991 Cphy_3213 Clostridium phytofermentans ISDg hypothetical protein YP_001560306.1 3919325 D 357809 CDS YP_001560307.1 160881339 5741992 complement(3920002..3920307) 1 NC_010001.1 KEGG: cbh:CLC_2720 transposase; hypothetical protein 3920307 5741992 Cphy_3214 Clostridium phytofermentans ISDg hypothetical protein YP_001560307.1 3920002 R 357809 CDS YP_001560308.1 160881340 5741993 complement(3920328..3920966) 1 NC_010001.1 KEGG: cbe:Cbei_0719 integrase, catalytic region; integrase, catalytic region 3920966 5741993 Cphy_3215 Clostridium phytofermentans ISDg integrase, catalytic region YP_001560308.1 3920328 R 357809 CDS YP_001560309.1 160881341 5741994 complement(3920978..3921454) 1 NC_010001.1 PFAM: transposase IS3/IS911 family protein; KEGG: lga:LGAS_1507 transposase; transposase IS3/IS911 family protein 3921454 5741994 Cphy_3216 Clostridium phytofermentans ISDg transposase IS3/IS911 family protein YP_001560309.1 3920978 R 357809 CDS YP_001560310.1 160881342 5741995 complement(3921799..3923274) 1 NC_010001.1 PFAM: glycoside hydrolase family 28; KEGG: fjo:Fjoh_3114 glycoside hydrolase, family 28; glycoside hydrolase family protein 3923274 5741995 Cphy_3217 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001560310.1 3921799 R 357809 CDS YP_001560311.1 160881343 5741996 3923565..3924722 1 NC_010001.1 PFAM: Protein of unknown function DUF895, eukaryotic; major facilitator superfamily MFS_1; KEGG: ckl:CKL_0592 predicted transporter protein; major facilitator transporter 3924722 5741996 Cphy_3218 Clostridium phytofermentans ISDg major facilitator transporter YP_001560311.1 3923565 D 357809 CDS YP_001560312.1 160881344 5741997 complement(3924970..3925452) 1 NC_010001.1 PFAM: transcription activator effector binding; KEGG: cac:CAC0426 transcriptional regulator (HTH_ARAC-domain); transcription activator effector binding 3925452 5741997 Cphy_3219 Clostridium phytofermentans ISDg transcription activator effector binding YP_001560312.1 3924970 R 357809 CDS YP_001560313.1 160881345 5741998 complement(3925509..3925700) 1 NC_010001.1 KEGG: cdf:CD1883 AraC-family transcriptional regulator; hypothetical protein 3925700 5741998 Cphy_3220 Clostridium phytofermentans ISDg hypothetical protein YP_001560313.1 3925509 R 357809 CDS YP_001560314.1 160881346 5741999 3926048..3926380 1 NC_010001.1 PFAM: Domain of unknown function DUF1801; KEGG: lbl:LBL_1943 hypothetical protein; hypothetical protein 3926380 5741999 Cphy_3221 Clostridium phytofermentans ISDg hypothetical protein YP_001560314.1 3926048 D 357809 CDS YP_001560315.1 160881347 5742000 complement(3926521..3927549) 1 NC_010001.1 PFAM: ribonucleotide reductase; KEGG: cno:NT01CX_2365 ribonucleoside-diphosphate reductase, beta subunit; ribonucleoside-diphosphate reductase 3927549 5742000 Cphy_3222 Clostridium phytofermentans ISDg ribonucleoside-diphosphate reductase YP_001560315.1 3926521 R 357809 CDS YP_001560316.1 160881348 5742001 complement(3927564..3929858) 1 NC_010001.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3929858 5742001 Cphy_3223 Clostridium phytofermentans ISDg ribonucleotide-diphosphate reductase subunit alpha YP_001560316.1 3927564 R 357809 CDS YP_001560317.1 160881349 5742002 complement(3930139..3930822) 1 NC_010001.1 hypothetical protein 3930822 5742002 Cphy_3224 Clostridium phytofermentans ISDg hypothetical protein YP_001560317.1 3930139 R 357809 CDS YP_001560318.1 160881350 5742003 complement(3930812..3931246) 1 NC_010001.1 hypothetical protein 3931246 5742003 Cphy_3225 Clostridium phytofermentans ISDg hypothetical protein YP_001560318.1 3930812 R 357809 CDS YP_001560319.1 160881351 5742004 complement(3931599..3932162) 1 NC_010001.1 PFAM: nitroreductase; KEGG: mma:MM_1584 NADPH-flavin oxidoreductase; nitroreductase 3932162 5742004 Cphy_3226 Clostridium phytofermentans ISDg nitroreductase YP_001560319.1 3931599 R 357809 CDS YP_001560320.1 160881352 5742005 complement(3932692..3933114) 1 NC_010001.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cbf:CLI_0887 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 3933114 5742005 Cphy_3227 Clostridium phytofermentans ISDg glyoxalase/bleomycin resistance protein/dioxygenase YP_001560320.1 3932692 R 357809 CDS YP_001560321.1 160881353 5742006 complement(3933307..3934080) 1 NC_010001.1 PFAM: Abortive infection protein; KEGG: tde:TDE1871 hypothetical protein; abortive infection protein 3934080 5742006 Cphy_3228 Clostridium phytofermentans ISDg abortive infection protein YP_001560321.1 3933307 R 357809 CDS YP_001560322.1 160881354 5742007 complement(3934169..3934561) 1 NC_010001.1 KEGG: cpe:CPE0748 hypothetical protein; hypothetical protein 3934561 5742007 Cphy_3229 Clostridium phytofermentans ISDg hypothetical protein YP_001560322.1 3934169 R 357809 CDS YP_001560323.1 160881355 5742008 complement(3934575..3936731) 1 NC_010001.1 KEGG: ctc:CTC00494 internalin A-like protein/ S-layer protein; hypothetical protein 3936731 5742008 Cphy_3230 Clostridium phytofermentans ISDg hypothetical protein YP_001560323.1 3934575 R 357809 CDS YP_001560324.1 160881356 5742009 complement(3936787..3937206) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbh:CLC_1455 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3937206 5742009 Cphy_3231 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001560324.1 3936787 R 357809 CDS YP_001560325.1 160881357 5742010 complement(3937375..3938262) 1 NC_010001.1 KEGG: amt:Amet_3811 hypothetical protein; hypothetical protein 3938262 5742010 Cphy_3232 Clostridium phytofermentans ISDg hypothetical protein YP_001560325.1 3937375 R 357809 CDS YP_001560326.1 160881358 5742011 complement(3938758..3939561) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: btk:BT9727_2822 zwittermicin A-resistance protein; N-acetyltransferase GCN5 3939561 5742011 Cphy_3233 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001560326.1 3938758 R 357809 CDS YP_001560327.1 160881359 5742012 complement(3939729..3940430) 1 NC_010001.1 PFAM: Creatininase; KEGG: syn:sll0596 hypothetical protein; creatininase 3940430 5742012 Cphy_3234 Clostridium phytofermentans ISDg creatininase YP_001560327.1 3939729 R 357809 CDS YP_001560328.1 160881360 5742013 complement(3940793..3941185) 1 NC_010001.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: btk:BT9727_2277 hypothetical protein; 3-demethylubiquinone-9 3-methyltransferase 3941185 5742013 Cphy_3235 Clostridium phytofermentans ISDg 3-demethylubiquinone-9 3-methyltransferase YP_001560328.1 3940793 R 357809 CDS YP_001560329.1 160881361 5742014 complement(3941236..3941937) 1 NC_010001.1 KEGG: hne:HNE_2897 hypothetical protein; hypothetical protein 3941937 5742014 Cphy_3236 Clostridium phytofermentans ISDg hypothetical protein YP_001560329.1 3941236 R 357809 CDS YP_001560330.1 160881362 5742015 complement(3942269..3942916) 1 NC_010001.1 KEGG: btk:BT9727_4626 hypothetical protein; hypothetical protein 3942916 5742015 Cphy_3237 Clostridium phytofermentans ISDg hypothetical protein YP_001560330.1 3942269 R 357809 CDS YP_001560331.1 160881363 5742016 3943138..3943506 1 NC_010001.1 hypothetical protein 3943506 5742016 Cphy_3238 Clostridium phytofermentans ISDg hypothetical protein YP_001560331.1 3943138 D 357809 CDS YP_001560332.1 160881364 5742017 complement(3943604..3945511) 1 NC_010001.1 PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: cpf:CPF_1103 glycosyl hydrolase, family 20; glycoside hydrolase family protein 3945511 5742017 Cphy_3239 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001560332.1 3943604 R 357809 CDS YP_001560333.1 160881365 5742018 complement(3945691..3947259) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3316 extracellular solute-binding protein, family 1; extracellular solute-binding protein 3947259 5742018 Cphy_3240 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001560333.1 3945691 R 357809 CDS YP_001560334.1 160881366 5742019 complement(3947325..3948227) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0557 sugar ABC transporter permease; binding-protein-dependent transport systems inner membrane component 3948227 5742019 Cphy_3241 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001560334.1 3947325 R 357809 CDS YP_001560335.1 160881367 5742020 complement(3948227..3949159) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, multiple sugar transport system permease; binding-protein-dependent transport system inner membrane protein 3949159 5742020 Cphy_3242 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001560335.1 3948227 R 357809 CDS YP_001560336.1 160881368 5742021 complement(3949162..3950508) 1 NC_010001.1 KEGG: tte:TTE2589 hypothetical protein; hypothetical protein 3950508 5742021 Cphy_3243 Clostridium phytofermentans ISDg hypothetical protein YP_001560336.1 3949162 R 357809 CDS YP_001560337.1 160881369 5742022 complement(3950512..3951996) 1 NC_010001.1 KEGG: tte:TTE2593 hypothetical protein; hypothetical protein 3951996 5742022 Cphy_3244 Clostridium phytofermentans ISDg hypothetical protein YP_001560337.1 3950512 R 357809 CDS YP_001560338.1 160881370 5742023 complement(3952054..3952740) 1 NC_010001.1 KEGG: tte:TTE2592 hypothetical protein; hypothetical protein 3952740 5742023 Cphy_3245 Clostridium phytofermentans ISDg hypothetical protein YP_001560338.1 3952054 R 357809 CDS YP_001560339.1 160881371 5742024 complement(3952801..3953715) 1 NC_010001.1 PFAM: ROK family protein; KEGG: tte:TTE1926 transcriptional regulator; ROK family protein 3953715 5742024 Cphy_3246 Clostridium phytofermentans ISDg ROK family protein YP_001560339.1 3952801 R 357809 CDS YP_001560340.1 160881372 5742025 3954250..3954681 1 NC_010001.1 KEGG: sth:STH2880 hypothetical protein; hypothetical protein 3954681 5742025 Cphy_3247 Clostridium phytofermentans ISDg hypothetical protein YP_001560340.1 3954250 D 357809 CDS YP_001560341.1 160881373 5742026 complement(3954969..3955469) 1 NC_010001.1 hypothetical protein 3955469 5742026 Cphy_3248 Clostridium phytofermentans ISDg hypothetical protein YP_001560341.1 3954969 R 357809 CDS YP_001560342.1 160881374 5742027 complement(3955645..3956145) 1 NC_010001.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_2241 cupin 2, conserved barrel domain protein; cupin 3956145 5742027 Cphy_3249 Clostridium phytofermentans ISDg cupin YP_001560342.1 3955645 R 357809 CDS YP_001560343.1 160881375 5742028 complement(3956596..3957117) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mac:MA1158 acetyltransferase (GNAT) family protein; N-acetyltransferase GCN5 3957117 5742028 Cphy_3250 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001560343.1 3956596 R 357809 CDS YP_001560344.1 160881376 5742029 complement(3957191..3957550) 1 NC_010001.1 hypothetical protein 3957550 5742029 Cphy_3251 Clostridium phytofermentans ISDg hypothetical protein YP_001560344.1 3957191 R 357809 CDS YP_001560345.1 160881377 5742030 3958096..3958452 1 NC_010001.1 hypothetical protein 3958452 5742030 Cphy_3252 Clostridium phytofermentans ISDg hypothetical protein YP_001560345.1 3958096 D 357809 CDS YP_001560346.1 160881378 5742031 complement(3958646..3958930) 1 NC_010001.1 hypothetical protein 3958930 5742031 Cphy_3253 Clostridium phytofermentans ISDg hypothetical protein YP_001560346.1 3958646 R 357809 CDS YP_001560347.1 160881379 5742032 complement(3959168..3959434) 1 NC_010001.1 hypothetical protein 3959434 5742032 Cphy_3254 Clostridium phytofermentans ISDg hypothetical protein YP_001560347.1 3959168 R 357809 CDS YP_001560348.1 160881380 5742034 complement(3959707..3960486) 1 NC_010001.1 PFAM: nitroreductase; KEGG: mth:MTH933 hypothetical protein; nitroreductase 3960486 5742034 Cphy_3255 Clostridium phytofermentans ISDg nitroreductase YP_001560348.1 3959707 R 357809 CDS YP_001560349.1 160881381 5742035 complement(3960513..3961391) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: lmo:lmo0109 hypothetical protein; AraC family transcriptional regulator 3961391 5742035 Cphy_3256 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001560349.1 3960513 R 357809 CDS YP_001560350.1 160881382 5742036 complement(3961410..3963032) 1 NC_010001.1 PFAM: protein of unknown function UPF0118; KEGG: cpr:CPR_0707 probable permease; hypothetical protein 3963032 5742036 Cphy_3257 Clostridium phytofermentans ISDg hypothetical protein YP_001560350.1 3961410 R 357809 CDS YP_001560351.1 160881383 5742037 complement(3963044..3965569) 1 NC_010001.1 PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: cth:Cthe_0645 homocysteine S-methyltransferase; homocysteine S-methyltransferase 3965569 5742037 Cphy_3258 Clostridium phytofermentans ISDg homocysteine S-methyltransferase YP_001560351.1 3963044 R 357809 CDS YP_001560352.1 160881384 5742038 complement(3965760..3966860) 1 NC_010001.1 PFAM: metallophosphoesterase; KEGG: bce:BC2070 serine/threonine protein phosphatase; metallophosphoesterase 3966860 5742038 Cphy_3259 Clostridium phytofermentans ISDg metallophosphoesterase YP_001560352.1 3965760 R 357809 CDS YP_001560353.1 160881385 5742039 3967371..3968063 1 NC_010001.1 KEGG: cbe:Cbei_1494 hypothetical protein; hypothetical protein 3968063 5742039 Cphy_3260 Clostridium phytofermentans ISDg hypothetical protein YP_001560353.1 3967371 D 357809 CDS YP_001560354.1 160881386 5742040 3968083..3969093 1 NC_010001.1 KEGG: cac:CAC2564 hypothetical protein; hypothetical protein 3969093 5742040 Cphy_3261 Clostridium phytofermentans ISDg hypothetical protein YP_001560354.1 3968083 D 357809 CDS YP_001560355.1 160881387 5742041 3969594..3970568 1 NC_010001.1 PFAM: Collagen triple helix repeat; KEGG: bat:BAS1130 hypothetical protein; triple helix repeat-containing collagen 3970568 5742041 Cphy_3262 Clostridium phytofermentans ISDg triple helix repeat-containing collagen YP_001560355.1 3969594 D 357809 CDS YP_001560356.1 160881388 5741542 complement(3970779..3971429) 1 NC_010001.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pdi:BDI_3848 phosphatase, HAD family; HAD family hydrolase 3971429 5741542 Cphy_3263 Clostridium phytofermentans ISDg HAD family hydrolase YP_001560356.1 3970779 R 357809 CDS YP_001560357.1 160881389 5741543 3971582..3972370 1 NC_010001.1 PFAM: Ig domain protein group 2 domain protein; KEGG: cac:CAC3086 protein containing cell adhesion domain; Ig domain-containing protein 3972370 5741543 Cphy_3264 Clostridium phytofermentans ISDg Ig domain-containing protein YP_001560357.1 3971582 D 357809 CDS YP_001560358.1 160881390 5741544 3972440..3972670 1 NC_010001.1 hypothetical protein 3972670 5741544 Cphy_3265 Clostridium phytofermentans ISDg hypothetical protein YP_001560358.1 3972440 D 357809 CDS YP_001560359.1 160881391 5741545 complement(3972937..3973902) 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: dsy:DSY1168 hypothetical protein; inner-membrane translocator 3973902 5741545 Cphy_3266 Clostridium phytofermentans ISDg inner-membrane translocator YP_001560359.1 3972937 R 357809 CDS YP_001560360.1 160881392 5741546 complement(3973905..3975296) 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: dsy:DSY1169 hypothetical protein; inner-membrane translocator 3975296 5741546 Cphy_3267 Clostridium phytofermentans ISDg inner-membrane translocator YP_001560360.1 3973905 R 357809 CDS YP_001560361.1 160881393 5741547 complement(3975289..3976851) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1170 hypothetical protein; ABC transporter 3976851 5741547 Cphy_3268 Clostridium phytofermentans ISDg ABC transporter YP_001560361.1 3975289 R 357809 CDS YP_001560362.1 160881394 5741548 complement(3977083..3978252) 1 NC_010001.1 PFAM: basic membrane lipoprotein; KEGG: dsy:DSY1171 hypothetical protein; basic membrane lipoprotein 3978252 5741548 Cphy_3269 Clostridium phytofermentans ISDg basic membrane lipoprotein YP_001560362.1 3977083 R 357809 CDS YP_001560363.1 160881395 5741549 complement(3978730..3978987) 1 NC_010001.1 hypothetical protein 3978987 5741549 Cphy_3270 Clostridium phytofermentans ISDg hypothetical protein YP_001560363.1 3978730 R 357809 CDS YP_001560364.1 160881396 5741550 complement(3979006..3979680) 1 NC_010001.1 KEGG: pcu:pc1997 UDP-N-acetylglucosamine diphosphorylase; UDP-N-acetylglucosamine diphosphorylase 3979680 5741550 Cphy_3271 Clostridium phytofermentans ISDg UDP-N-acetylglucosamine diphosphorylase YP_001560364.1 3979006 R 357809 CDS YP_001560365.1 160881397 5741551 complement(3979787..3981952) 1 NC_010001.1 KEGG: amt:Amet_1141 DNA topoisomerase, type IA, central domain protein; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase 3981952 5741551 Cphy_3272 Clostridium phytofermentans ISDg DNA topoisomerase YP_001560365.1 3979787 R 357809 CDS YP_001560366.1 160881398 5741552 3982438..3983076 1 NC_010001.1 PFAM: protein of unknown function DUF1121; KEGG: csc:Csac_1051 protein of unknown function DUF1121; hypothetical protein 3983076 5741552 Cphy_3273 Clostridium phytofermentans ISDg hypothetical protein YP_001560366.1 3982438 D 357809 CDS YP_001560367.1 160881399 5741553 complement(3983247..3984485) 1 NC_010001.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 3984485 glyA 5741553 glyA Clostridium phytofermentans ISDg serine hydroxymethyltransferase YP_001560367.1 3983247 R 357809 CDS YP_001560368.1 160881400 5741554 complement(3984716..3985594) 1 NC_010001.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cpf:CPF_0030 DegV family protein; degV family protein 3985594 5741554 Cphy_3275 Clostridium phytofermentans ISDg degV family protein YP_001560368.1 3984716 R 357809 CDS YP_001560369.1 160881401 5741555 3985882..3987255 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_2056 MATE efflux family protein; MATE efflux family protein 3987255 5741555 Cphy_3276 Clostridium phytofermentans ISDg MATE efflux family protein YP_001560369.1 3985882 D 357809 CDS YP_001560370.1 160881402 5741556 complement(3987515..3988447) 1 NC_010001.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0765 Periplasmic sugar-binding proteins; periplasmic binding protein/LacI transcriptional regulator 3988447 5741556 Cphy_3277 Clostridium phytofermentans ISDg periplasmic binding protein/LacI transcriptional regulator YP_001560370.1 3987515 R 357809 CDS YP_001560371.1 160881403 5741557 complement(3988513..3989517) 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0163 ribose ABC transporter, permease; monosaccharide-transporting ATPase 3989517 5741557 Cphy_3278 Clostridium phytofermentans ISDg monosaccharide-transporting ATPase YP_001560371.1 3988513 R 357809 CDS YP_001560372.1 160881404 5741558 complement(3989542..3991059) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component; ABC transporter 3991059 5741558 Cphy_3279 Clostridium phytofermentans ISDg ABC transporter YP_001560372.1 3989542 R 357809 CDS YP_001560373.1 160881405 5741559 complement(3991185..3992636) 1 NC_010001.1 KEGG: cpr:CPR_1601 ribose transport ATP-binding protein RbsA; sugar ABC transporter ATPase-like protein 3992636 5741559 Cphy_3280 Clostridium phytofermentans ISDg sugar ABC transporter ATPase-like protein YP_001560373.1 3991185 R 357809 CDS YP_001560374.1 160881406 5741560 complement(3992703..3993710) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: csc:Csac_2533 integral membrane sensor signal transduction histidine kinase; signal transduction histidine kinase, LytS 3993710 5741560 Cphy_3281 Clostridium phytofermentans ISDg signal transduction histidine kinase, LytS YP_001560374.1 3992703 R 357809 CDS YP_001560375.1 160881407 5741561 complement(3993730..3995337) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_0124 response regulator receiver protein; two component AraC family transcriptional regulator 3995337 5741561 Cphy_3282 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001560375.1 3993730 R 357809 CDS YP_001560376.1 160881408 5741562 3995923..3997602 1 NC_010001.1 KEGG: cth:Cthe_0760 hypothetical protein; hypothetical protein 3997602 5741562 Cphy_3283 Clostridium phytofermentans ISDg hypothetical protein YP_001560376.1 3995923 D 357809 CDS YP_001560377.1 160881409 5741563 3997934..3998641 1 NC_010001.1 TIGRFAM: integral membrane protein TIGR01906; PFAM: Integral membrane protein 1906; KEGG: cbf:CLI_3471 integral membrane protein TIGR01906; hypothetical protein 3998641 5741563 Cphy_3284 Clostridium phytofermentans ISDg hypothetical protein YP_001560377.1 3997934 D 357809 CDS YP_001560378.1 160881410 5741564 complement(3998753..4000441) 1 NC_010001.1 hypothetical protein 4000441 5741564 Cphy_3285 Clostridium phytofermentans ISDg hypothetical protein YP_001560378.1 3998753 R 357809 CDS YP_001560379.1 160881411 5741565 4001249..4002424 1 NC_010001.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 4002424 5741565 Cphy_3286 Clostridium phytofermentans ISDg transposase IS204/IS1001/IS1096/IS1165 family protein YP_001560379.1 4001249 D 357809 CDS YP_001560380.1 160881412 5741566 complement(4002699..4004153) 1 NC_010001.1 KEGG: csc:Csac_1713 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase 4004153 5741566 Cphy_3287 Clostridium phytofermentans ISDg inosine-5'-monophosphate dehydrogenase YP_001560380.1 4002699 R 357809 CDS YP_001560381.1 160881413 5741567 complement(4004684..4005193) 1 NC_010001.1 KEGG: csc:Csac_1712 hypothetical protein; hypothetical protein 4005193 5741567 Cphy_3288 Clostridium phytofermentans ISDg hypothetical protein YP_001560381.1 4004684 R 357809 CDS YP_001560382.1 160881414 5741568 complement(4005483..4007108) 1 NC_010001.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: cth:Cthe_2892 chaperonin GroEL; molecular chaperone GroEL 4007108 5741568 Cphy_3289 Clostridium phytofermentans ISDg molecular chaperone GroEL YP_001560382.1 4005483 R 357809 CDS YP_001560383.1 160881415 5741569 complement(4007207..4007494) 1 NC_010001.1 PFAM: chaperonin Cpn10; KEGG: cno:NT01CX_0463 chaperonin, 10 kDa; chaperonin Cpn10 4007494 5741569 Cphy_3290 Clostridium phytofermentans ISDg chaperonin Cpn10 YP_001560383.1 4007207 R 357809 CDS YP_001560384.1 160881416 5741570 4008223..4008573 1 NC_010001.1 PFAM: VanZ family protein; KEGG: gtn:GTNG_0437 hypothetical protein; VanZ family protein 4008573 5741570 Cphy_3291 Clostridium phytofermentans ISDg VanZ family protein YP_001560384.1 4008223 D 357809 CDS YP_001560385.1 160881417 5741571 complement(4008663..4009388) 1 NC_010001.1 KEGG: cth:Cthe_2069 hypothetical protein; hypothetical protein 4009388 5741571 Cphy_3292 Clostridium phytofermentans ISDg hypothetical protein YP_001560385.1 4008663 R 357809 CDS YP_001560386.1 160881418 5741572 complement(4009525..4010355) 1 NC_010001.1 KEGG: cno:NT01CX_1368 hypothetical protein; hypothetical protein 4010355 5741572 Cphy_3293 Clostridium phytofermentans ISDg hypothetical protein YP_001560386.1 4009525 R 357809 CDS YP_001560387.1 160881419 5741573 complement(4010368..4012065) 1 NC_010001.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 4012065 5741573 Cphy_3294 Clostridium phytofermentans ISDg glutaminyl-tRNA synthetase YP_001560387.1 4010368 R 357809 CDS YP_001560388.1 160881420 5741574 complement(4012384..4012950) 1 NC_010001.1 PFAM: cell wall hydrolase SleB; KEGG: bca:BCE_3795 cell wall hydrolase; cell wall hydrolase SleB 4012950 5741574 Cphy_3295 Clostridium phytofermentans ISDg cell wall hydrolase SleB YP_001560388.1 4012384 R 357809 CDS YP_001560389.1 160881421 5741575 complement(4013428..4014570) 1 NC_010001.1 KEGG: cth:Cthe_1219 hypothetical protein; hypothetical protein 4014570 5741575 Cphy_3296 Clostridium phytofermentans ISDg hypothetical protein YP_001560389.1 4013428 R 357809 CDS YP_001560390.1 160881422 5741576 complement(4014600..4015616) 1 NC_010001.1 KEGG: bat:BAS4429 hypothetical protein; hypothetical protein 4015616 5741576 Cphy_3297 Clostridium phytofermentans ISDg hypothetical protein YP_001560390.1 4014600 R 357809 CDS YP_001560391.1 160881423 5741577 complement(4015921..4017669) 1 NC_010001.1 TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: amt:Amet_1063 oligoendopeptidase, PepF/M3 family; pepF/M3 family oligoendopeptidase 4017669 5741577 Cphy_3298 Clostridium phytofermentans ISDg pepF/M3 family oligoendopeptidase YP_001560391.1 4015921 R 357809 CDS YP_001560392.1 160881424 5741578 complement(4018266..4020059) 1 NC_010001.1 KEGG: dsy:DSY3139 fumarate reductase flavoprotein subunit; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; flavocytochrome c 4020059 5741578 Cphy_3299 Clostridium phytofermentans ISDg flavocytochrome c YP_001560392.1 4018266 R 357809 CDS YP_001560393.1 160881425 5741579 complement(4020194..4021588) 1 NC_010001.1 KEGG: cha:CHAB381_0623 capsule biosynthesis protein; poly-gamma-glutamate biosynthesis (capsule formation)-like protein 4021588 5741579 Cphy_3300 Clostridium phytofermentans ISDg poly-gamma-glutamate biosynthesis (capsule formation)-like protein YP_001560393.1 4020194 R 357809 CDS YP_001560394.1 160881426 5741580 4021796..4022188 1 NC_010001.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: bay:RBAM_030470 YvsG; membrane-bound metal-dependent hydrolase 4022188 5741580 Cphy_3301 Clostridium phytofermentans ISDg membrane-bound metal-dependent hydrolase YP_001560394.1 4021796 D 357809 CDS YP_001560395.1 160881427 5741581 complement(4022326..4022676) 1 NC_010001.1 hypothetical protein 4022676 5741581 Cphy_3302 Clostridium phytofermentans ISDg hypothetical protein YP_001560395.1 4022326 R 357809 CDS YP_001560396.1 160881428 5741582 complement(4023100..4023702) 1 NC_010001.1 PFAM: Phosphoglycerate mutase; KEGG: lac:LBA1065 phosphoglycerate mutase; phosphoglycerate mutase 4023702 5741582 Cphy_3303 Clostridium phytofermentans ISDg phosphoglycerate mutase YP_001560396.1 4023100 R 357809 CDS YP_001560397.1 160881429 5741583 complement(4023831..4025027) 1 NC_010001.1 PFAM: regulatory protein MerR; MCP methyltransferase CheR-type; NodS family protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: lga:LGAS_1137 predicted transcriptional regulator; chemotaxis protein CheR 4025027 5741583 Cphy_3304 Clostridium phytofermentans ISDg chemotaxis protein CheR YP_001560397.1 4023831 R 357809 CDS YP_001560398.1 160881430 5741584 complement(4025072..4026064) 1 NC_010001.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cpf:CPF_0600 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 4026064 5741584 Cphy_3305 Clostridium phytofermentans ISDg dTDP-glucose 4,6-dehydratase YP_001560398.1 4025072 R 357809 CDS YP_001560399.1 160881431 5741585 complement(4026225..4026794) 1 NC_010001.1 PFAM: protein of unknown function DUF218; KEGG: cpf:CPF_1089 hypothetical protein; hypothetical protein 4026794 5741585 Cphy_3306 Clostridium phytofermentans ISDg hypothetical protein YP_001560399.1 4026225 R 357809 CDS YP_001560400.1 160881432 5741586 complement(4026839..4027183) 1 NC_010001.1 hypothetical protein 4027183 5741586 Cphy_3307 Clostridium phytofermentans ISDg hypothetical protein YP_001560400.1 4026839 R 357809 CDS YP_001560401.1 160881433 5741587 complement(4027540..4028118) 1 NC_010001.1 hypothetical protein 4028118 5741587 Cphy_3308 Clostridium phytofermentans ISDg hypothetical protein YP_001560401.1 4027540 R 357809 CDS YP_001560402.1 160881434 5741588 complement(4028258..4028884) 1 NC_010001.1 PFAM: coagulation factor 5/8 type domain protein; KEGG: sma:SAV1723 mycodextranase; coagulation factor 5/8 type domain-containing protein 4028884 5741588 Cphy_3309 Clostridium phytofermentans ISDg coagulation factor 5/8 type domain-containing protein YP_001560402.1 4028258 R 357809 CDS YP_001560403.1 160881435 5741589 complement(4028993..4030549) 1 NC_010001.1 KEGG: aor:AO090138000086 predicted protein Pfam: Glyco_hydro_49 Glyco_hydro_28 Zn_clus Fungal_trans BCNT PROSITE: ZN2_CY6_FUNGAL_1 ZN2_CY6_FUNGAL_2; hypothetical protein 4030549 5741589 Cphy_3310 Clostridium phytofermentans ISDg hypothetical protein YP_001560403.1 4028993 R 357809 CDS YP_001560404.1 160881436 5741590 complement(4030600..4031262) 1 NC_010001.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cac:CAC2614 beta-phosphoglucomutase; beta-phosphoglucomutase 4031262 5741590 Cphy_3311 Clostridium phytofermentans ISDg beta-phosphoglucomutase YP_001560404.1 4030600 R 357809 CDS YP_001560405.1 160881437 5741591 4031558..4032568 1 NC_010001.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cbe:Cbei_1439 regulatory protein, LacI; LacI family transcriptional regulator 4032568 5741591 Cphy_3312 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001560405.1 4031558 D 357809 CDS YP_001560406.1 160881438 5741592 complement(4032640..4034886) 1 NC_010001.1 PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: ana:all4989 hypothetical protein; Kojibiose phosphorylase 4034886 5741592 Cphy_3313 Clostridium phytofermentans ISDg Kojibiose phosphorylase YP_001560406.1 4032640 R 357809 CDS YP_001560407.1 160881439 5741593 complement(4035015..4037432) 1 NC_010001.1 PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; KEGG: cac:CAC2685 trehalose/maltose hydrolase (phosphorylase); Kojibiose phosphorylase 4037432 5741593 Cphy_3314 Clostridium phytofermentans ISDg Kojibiose phosphorylase YP_001560407.1 4035015 R 357809 CDS YP_001560408.1 160881440 5741594 complement(4037436..4038314) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO7011 membrane transport protein.; binding-protein-dependent transport systems inner membrane component 4038314 5741594 Cphy_3315 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001560408.1 4037436 R 357809 CDS YP_001560409.1 160881441 5741595 complement(4038325..4039221) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1726 ABC transporter permease; binding-protein-dependent transport systems inner membrane component 4039221 5741595 Cphy_3316 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001560409.1 4038325 R 357809 CDS YP_001560410.1 160881442 5741596 complement(4039364..4040842) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV1727 sugar-binding lipoprotein precursor; extracellular solute-binding protein 4040842 5741596 Cphy_3317 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001560410.1 4039364 R 357809 CDS YP_001560411.1 160881443 5741597 4041326..4041751 1 NC_010001.1 SMART: regulatory protein MarR; KEGG: cpr:CPR_0509 transcriptional regulator, MarR family; MarR family transcriptional regulator 4041751 5741597 Cphy_3318 Clostridium phytofermentans ISDg MarR family transcriptional regulator YP_001560411.1 4041326 D 357809 CDS YP_001560412.1 160881444 5741598 4041748..4043130 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ctc:CTC02405 Na+ driven multidrug efflux pump; MATE efflux family protein 4043130 5741598 Cphy_3319 Clostridium phytofermentans ISDg MATE efflux family protein YP_001560412.1 4041748 D 357809 CDS YP_001560413.1 160881445 5741601 complement(4044302..4044943) 1 NC_010001.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 4044943 5741601 Cphy_3321 Clostridium phytofermentans ISDg RNA polymerase factor sigma-70 YP_001560413.1 4044302 R 357809 CDS YP_001560414.1 160881446 5741602 complement(4045264..4046010) 1 NC_010001.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cdf:CD0055 tRNA/rRNA methyltransferase; RNA methyltransferase 4046010 5741602 Cphy_3322 Clostridium phytofermentans ISDg RNA methyltransferase YP_001560414.1 4045264 R 357809 CDS YP_001560415.1 160881447 5741603 complement(4046158..4046592) 1 NC_010001.1 PFAM: ribonuclease III; KEGG: cth:Cthe_2061 hypothetical protein; ribonuclease III 4046592 5741603 Cphy_3323 Clostridium phytofermentans ISDg ribonuclease III YP_001560415.1 4046158 R 357809 CDS YP_001560416.1 160881448 5741604 complement(4046577..4047989) 1 NC_010001.1 TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; KEGG: cdf:CD0052 cysteinyl-tRNA synthetase; cysteinyl-tRNA synthetase 4047989 5741604 Cphy_3324 Clostridium phytofermentans ISDg cysteinyl-tRNA synthetase YP_001560416.1 4046577 R 357809 CDS YP_001560417.1 160881449 5741605 complement(4048039..4048707) 1 NC_010001.1 TIGRFAM: serine O-acetyltransferase; KEGG: csc:Csac_0707 serine O-acetyltransferase; serine O-acetyltransferase 4048707 5741605 Cphy_3325 Clostridium phytofermentans ISDg serine O-acetyltransferase YP_001560417.1 4048039 R 357809 CDS YP_001560418.1 160881450 5741606 complement(4049150..4049728) 1 NC_010001.1 KEGG: cpf:CPF_2616 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4049728 5741606 Cphy_3326 Clostridium phytofermentans ISDg 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_001560418.1 4049150 R 357809 CDS YP_001560419.1 160881451 5741607 complement(4049796..4050236) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: tte:TTE0288 CheY-like receiver domains; AraC family transcriptional regulator 4050236 5741607 Cphy_3327 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001560419.1 4049796 R 357809 CDS YP_001560420.1 160881452 5741608 complement(4050701..4050982) 1 NC_010001.1 hypothetical protein 4050982 5741608 Cphy_3328 Clostridium phytofermentans ISDg hypothetical protein YP_001560420.1 4050701 R 357809 CDS YP_001560421.1 160881453 5741609 complement(4051097..4054015) 1 NC_010001.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: bha:BH1908 glucan 1,4-beta-glucosidase; glycoside hydrolase family 3 4054015 5741609 Cphy_3329 Clostridium phytofermentans ISDg glycoside hydrolase family 3 YP_001560421.1 4051097 R 357809 CDS YP_001560422.1 160881454 5741610 complement(4054141..4054431) 1 NC_010001.1 KEGG: cdf:CD3324 hypothetical protein; hypothetical protein 4054431 5741610 Cphy_3330 Clostridium phytofermentans ISDg hypothetical protein YP_001560422.1 4054141 R 357809 CDS YP_001560423.1 160881455 5741611 complement(4055168..4057156) 1 NC_010001.1 PFAM: protein of unknown function DUF214; KEGG: csc:Csac_0506 protein of unknown function DUF214; hypothetical protein 4057156 5741611 Cphy_3331 Clostridium phytofermentans ISDg hypothetical protein YP_001560423.1 4055168 R 357809 CDS YP_001560424.1 160881456 5741612 complement(4057149..4057928) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_0507 ABC transporter related; ABC transporter 4057928 5741612 Cphy_3332 Clostridium phytofermentans ISDg ABC transporter YP_001560424.1 4057149 R 357809 CDS YP_001560425.1 160881457 5741613 complement(4058214..4059266) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; KEGG: csc:Csac_0508 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4059266 5741613 Cphy_3333 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001560425.1 4058214 R 357809 CDS YP_001560426.1 160881458 5741614 complement(4059285..4059956) 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: csc:Csac_0509 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4059956 5741614 Cphy_3334 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001560426.1 4059285 R 357809 CDS YP_001560427.1 160881459 5741615 complement(4060078..4060809) 1 NC_010001.1 PFAM: aminoglycoside phosphotransferase; KEGG: cac:CAC2572 possible aminoglycoside phosphotransferase (protein kinase related), diverged; aminoglycoside phosphotransferase 4060809 5741615 Cphy_3335 Clostridium phytofermentans ISDg aminoglycoside phosphotransferase YP_001560427.1 4060078 R 357809 CDS YP_001560428.1 160881460 5741616 complement(4061107..4063470) 1 NC_010001.1 KEGG: aeh:Mlg_2687 regulator of chromosome condensation, RCC1; alpha-tubulin suppressor and related RCC1 domain-containing protein 4063470 5741616 Cphy_3336 Clostridium phytofermentans ISDg alpha-tubulin suppressor and related RCC1 domain-containing protein YP_001560428.1 4061107 R 357809 CDS YP_001560429.1 160881461 5741617 complement(4063470..4063964) 1 NC_010001.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cbe:Cbei_1736 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 4063964 5741617 Cphy_3337 Clostridium phytofermentans ISDg ECF subfamily RNA polymerase sigma-24 factor YP_001560429.1 4063470 R 357809 CDS YP_001560430.1 160881462 5741618 complement(4064361..4065068) 1 NC_010001.1 PFAM: Phosphoglycerate mutase; KEGG: cme:CMA037C hypothetical protein Pfam: PGAM; phosphoglycerate mutase 4065068 5741618 Cphy_3338 Clostridium phytofermentans ISDg phosphoglycerate mutase YP_001560430.1 4064361 R 357809 CDS YP_001560431.1 160881463 5741619 complement(4065325..4067127) 1 NC_010001.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cdf:CD1666 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 4067127 5741619 Cphy_3339 Clostridium phytofermentans ISDg glycerophosphoryl diester phosphodiesterase YP_001560431.1 4065325 R 357809 CDS YP_001560432.1 160881464 5741620 complement(4067140..4067880) 1 NC_010001.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: vpa:VPA0110 phosphatase; HAD family hydrolase 4067880 5741620 Cphy_3340 Clostridium phytofermentans ISDg HAD family hydrolase YP_001560432.1 4067140 R 357809 CDS YP_001560433.1 160881465 5741621 complement(4068393..4068926) 1 NC_010001.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: lin:lin0464 hypothetical protein; helix-turn-helix type 11 domain-containing protein 4068926 5741621 Cphy_3341 Clostridium phytofermentans ISDg helix-turn-helix type 11 domain-containing protein YP_001560433.1 4068393 R 357809 CDS YP_001560434.1 160881466 5741622 4069021..4069635 1 NC_010001.1 PFAM: peptidase S51 dipeptidase E; KEGG: abu:Abu_0883 peptidase, S51 family; peptidase S51 dipeptidase E 4069635 5741622 Cphy_3342 Clostridium phytofermentans ISDg peptidase S51 dipeptidase E YP_001560434.1 4069021 D 357809 CDS YP_001560435.1 160881467 5741625 complement(4070205..4071074) 1 NC_010001.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: ctc:CTC02002 DegV protein; degV family protein 4071074 5741625 Cphy_3343 Clostridium phytofermentans ISDg degV family protein YP_001560435.1 4070205 R 357809 CDS YP_001560436.1 160881468 5741626 complement(4071104..4071937) 1 NC_010001.1 PFAM: DegV family protein; KEGG: cno:NT01CX_0895 DegV family protein; DegV family protein 4071937 5741626 Cphy_3344 Clostridium phytofermentans ISDg DegV family protein YP_001560436.1 4071104 R 357809 CDS YP_001560437.1 160881469 5741627 complement(4072265..4073491) 1 NC_010001.1 PFAM: phosphofructokinase; KEGG: cth:Cthe_0347 phosphofructokinase; phosphofructokinase 4073491 5741627 Cphy_3345 Clostridium phytofermentans ISDg phosphofructokinase YP_001560437.1 4072265 R 357809 CDS YP_001560438.1 160881470 5741628 complement(4073838..4075199) 1 NC_010001.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: dsy:DSY2917 hypothetical protein; xanthine/uracil/vitamin C permease 4075199 5741628 Cphy_3346 Clostridium phytofermentans ISDg xanthine/uracil/vitamin C permease YP_001560438.1 4073838 R 357809 CDS YP_001560439.1 160881471 5741629 complement(4075722..4077407) 1 NC_010001.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: cth:Cthe_2714 acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase large subunit 4077407 5741629 Cphy_3347 Clostridium phytofermentans ISDg acetolactate synthase large subunit YP_001560439.1 4075722 R 357809 CDS YP_001560440.1 160881472 5741630 complement(4077540..4079213) 1 NC_010001.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4079213 5741630 Cphy_3348 Clostridium phytofermentans ISDg dihydroxy-acid dehydratase YP_001560440.1 4077540 R 357809 CDS YP_001560441.1 160881473 5741631 complement(4079934..4081157) 1 NC_010001.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 4081157 5741631 Cphy_3349 Clostridium phytofermentans ISDg peptidase T YP_001560441.1 4079934 R 357809 CDS YP_001560442.1 160881474 5741632 complement(4081659..4085540) 1 NC_010001.1 KEGG: cac:CAC1655 bifunctional enzyme phosphoribosylformylglycinamidine (FGAM) synthase (synthetase domain/glutamine amidotransferase domain); TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; phosphoribosylformylglycinamidine synthase 4085540 5741632 Cphy_3350 Clostridium phytofermentans ISDg phosphoribosylformylglycinamidine synthase YP_001560442.1 4081659 R 357809 CDS YP_001560443.1 160881475 5741633 4085878..4086840 1 NC_010001.1 PFAM: glycosyl transferase family 4; KEGG: tde:TDE2249 phospho-N-acetylmuramoyl-pentapeptide-transferase; glycosyl transferase family protein 4086840 5741633 Cphy_3351 Clostridium phytofermentans ISDg glycosyl transferase family protein YP_001560443.1 4085878 D 357809 CDS YP_001560444.1 160881476 5741634 4086874..4087764 1 NC_010001.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cth:Cthe_0553 transcriptional regulator, LysR family; LysR family transcriptional regulator 4087764 5741634 Cphy_3352 Clostridium phytofermentans ISDg LysR family transcriptional regulator YP_001560444.1 4086874 D 357809 CDS YP_001560445.1 160881477 5741635 complement(4087902..4088837) 1 NC_010001.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: cbe:Cbei_4345 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 4088837 5741635 Cphy_3353 Clostridium phytofermentans ISDg succinylglutamate desuccinylase/aspartoacylase YP_001560445.1 4087902 R 357809 CDS YP_001560446.1 160881478 5741636 complement(4088838..4089773) 1 NC_010001.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: cbe:Cbei_4346 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 4089773 5741636 Cphy_3354 Clostridium phytofermentans ISDg succinylglutamate desuccinylase/aspartoacylase YP_001560446.1 4088838 R 357809 CDS YP_001560447.1 160881479 5741637 complement(4090087..4090584) 1 NC_010001.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase small subunit 4090584 leuD 5741637 leuD Clostridium phytofermentans ISDg 3-isopropylmalate dehydratase small subunit YP_001560447.1 4090087 R 357809 CDS YP_001560448.1 160881480 5741638 complement(4090732..4091997) 1 NC_010001.1 KEGG: ckl:CKL_2159 LeuC; TIGRFAM: homoaconitate hydratase family protein; 3-isopropylmalate dehydratase, large subunit; 3-isopropylmalate dehydratase; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase large subunit 4091997 5741638 Cphy_3356 Clostridium phytofermentans ISDg 3-isopropylmalate dehydratase large subunit YP_001560448.1 4090732 R 357809 CDS YP_001560449.1 160881481 5741639 complement(4092010..4092360) 1 NC_010001.1 hypothetical protein 4092360 5741639 Cphy_3357 Clostridium phytofermentans ISDg hypothetical protein YP_001560449.1 4092010 R 357809 CDS YP_001560450.1 160881482 5741640 complement(4092636..4093718) 1 NC_010001.1 KEGG: amt:Amet_3455 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 4093718 5741640 Cphy_3358 Clostridium phytofermentans ISDg 3-isopropylmalate dehydrogenase YP_001560450.1 4092636 R 357809 CDS YP_001560451.1 160881483 5741641 4094025..4094168 1 NC_010001.1 KEGG: bpu:BPUM_2481 possible glyoxalase; hypothetical protein 4094168 5741641 Cphy_3359 Clostridium phytofermentans ISDg hypothetical protein YP_001560451.1 4094025 D 357809 CDS YP_001560452.1 160881484 5741642 complement(4094449..4095204) 1 NC_010001.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tde:TDE1878 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 4095204 5741642 Cphy_3360 Clostridium phytofermentans ISDg HAD family hydrolase YP_001560452.1 4094449 R 357809 CDS YP_001560453.1 160881485 5741643 complement(4095186..4096109) 1 NC_010001.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cbe:Cbei_1959 transcriptional regulator, LysR family; LysR family transcriptional regulator 4096109 5741643 Cphy_3361 Clostridium phytofermentans ISDg LysR family transcriptional regulator YP_001560453.1 4095186 R 357809 CDS YP_001560454.1 160881486 5741644 complement(4096233..4097285) 1 NC_010001.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: oih:OB0896 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase 4097285 5741644 Cphy_3362 Clostridium phytofermentans ISDg A/G-specific adenine glycosylase YP_001560454.1 4096233 R 357809 CDS YP_001560455.1 160881487 5741645 4097680..4098708 1 NC_010001.1 hypothetical protein 4098708 5741645 Cphy_3363 Clostridium phytofermentans ISDg hypothetical protein YP_001560455.1 4097680 D 357809 CDS YP_001560456.1 160881488 5741646 complement(4098867..4101254) 1 NC_010001.1 PFAM: transglutaminase domain protein; KEGG: cth:Cthe_1056 transglutaminase-like protein; transglutaminase domain-containing protein 4101254 5741646 Cphy_3364 Clostridium phytofermentans ISDg transglutaminase domain-containing protein YP_001560456.1 4098867 R 357809 CDS YP_001560457.1 160881489 5741647 complement(4101518..4102687) 1 NC_010001.1 PFAM: protein of unknown function DUF58; KEGG: cth:Cthe_1055 protein of unknown function DUF58; hypothetical protein 4102687 5741647 Cphy_3365 Clostridium phytofermentans ISDg hypothetical protein YP_001560457.1 4101518 R 357809 CDS YP_001560458.1 160881490 5741648 complement(4102705..4103655) 1 NC_010001.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: tte:TTE2215 MoxR-like ATPases; ATPase 4103655 5741648 Cphy_3366 Clostridium phytofermentans ISDg ATPase YP_001560458.1 4102705 R 357809 CDS YP_001560459.1 160881491 5741649 complement(4103996..4106953) 1 NC_010001.1 Cellulase; PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: csc:Csac_1076 glycoside hydrolase, family 48; cellulose 1,4-beta-cellobiosidase 4106953 5741649 Cphy_3367 Clostridium phytofermentans ISDg cellulose 1,4-beta-cellobiosidase YP_001560459.1 4103996 R 357809 CDS YP_001560460.1 160881492 5741650 complement(4107033..4109792) 1 NC_010001.1 PFAM: glycoside hydrolase family 48; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: csc:Csac_1076 glycoside hydrolase, family 48; cellulose 1,4-beta-cellobiosidase 4109792 5741650 Cphy_3368 Clostridium phytofermentans ISDg cellulose 1,4-beta-cellobiosidase YP_001560460.1 4107033 R 357809 CDS YP_001560461.1 160881493 5741651 complement(4110435..4112468) 1 NC_010001.1 molecular chaperone; heat shock protein 90 4112468 5741651 Cphy_3369 Clostridium phytofermentans ISDg heat shock protein 90 YP_001560461.1 4110435 R 357809 CDS YP_001560462.1 160881494 5741652 complement(4112634..4113128) 1 NC_010001.1 hypothetical protein 4113128 5741652 Cphy_3370 Clostridium phytofermentans ISDg hypothetical protein YP_001560462.1 4112634 R 357809 CDS YP_001560463.1 160881495 5741653 complement(4113223..4113993) 1 NC_010001.1 KEGG: bvu:BVU_3384 hypothetical protein; hypothetical protein 4113993 5741653 Cphy_3371 Clostridium phytofermentans ISDg hypothetical protein YP_001560463.1 4113223 R 357809 CDS YP_001560464.1 160881496 5741654 complement(4114179..4115807) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BG13270 ABC transport system ATP-binding protein; ABC transporter 4115807 5741654 Cphy_3372 Clostridium phytofermentans ISDg ABC transporter YP_001560464.1 4114179 R 357809 CDS YP_001560465.1 160881497 5741655 complement(4116111..4117541) 1 NC_010001.1 KEGG: tva:TVAG_154640 surface antigen BspA-like Pfam: FNIP Pentapeptide_2 PROSITE: SER_RICH; hypothetical protein 4117541 5741655 Cphy_3373 Clostridium phytofermentans ISDg hypothetical protein YP_001560465.1 4116111 R 357809 CDS YP_001560466.1 160881498 5741656 complement(4117863..4119971) 1 NC_010001.1 PFAM: glutamine synthetase catalytic region; KEGG: cth:Cthe_0863 glutamine synthetase, catalytic region; glutamine synthetase 4119971 5741656 Cphy_3374 Clostridium phytofermentans ISDg glutamine synthetase YP_001560466.1 4117863 R 357809 CDS YP_001560467.1 160881499 5741657 complement(4120333..4121241) 1 NC_010001.1 PFAM: MscS Mechanosensitive ion channel; KEGG: cps:CPS_4603 mechanosensitive ion channel family protein; MscS mechanosensitive ion channel 4121241 5741657 Cphy_3375 Clostridium phytofermentans ISDg MscS mechanosensitive ion channel YP_001560467.1 4120333 R 357809 CDS YP_001560468.1 160881500 5741658 complement(4121385..4122044) 1 NC_010001.1 PFAM: protein of unknown function DUF624; KEGG: tte:TTE1959 hypothetical protein; hypothetical protein 4122044 5741658 Cphy_3376 Clostridium phytofermentans ISDg hypothetical protein YP_001560468.1 4121385 R 357809 CDS YP_001560469.1 160881501 5741659 complement(4122138..4123070) 1 NC_010001.1 KEGG: cdf:CD2491 mannose-6-phosphate isomerase; TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; mannose-6-phosphate isomerase 4123070 5741659 Cphy_3377 Clostridium phytofermentans ISDg mannose-6-phosphate isomerase YP_001560469.1 4122138 R 357809 CDS YP_001560470.1 160881502 5741660 4123295..4123918 1 NC_010001.1 PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: sak:SAK_1047 methyltransferase domain protein; methyltransferase small 4123918 5741660 Cphy_3378 Clostridium phytofermentans ISDg methyltransferase small YP_001560470.1 4123295 D 357809 CDS YP_001560471.1 160881503 5741661 complement(4124135..4126075) 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1825 ABC-type multidrug/protein/lipid transport system, ATPase; ABC transporter 4126075 5741661 Cphy_3379 Clostridium phytofermentans ISDg ABC transporter YP_001560471.1 4124135 R 357809 CDS YP_001560472.1 160881504 5741662 complement(4126110..4127831) 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC2393 uncharacterized ABC transporter, ATPase component; ABC transporter 4127831 5741662 Cphy_3380 Clostridium phytofermentans ISDg ABC transporter YP_001560472.1 4126110 R 357809 CDS YP_001560473.1 160881505 5741663 complement(4128034..4128618) 1 NC_010001.1 TIGRFAM: xanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: cno:NT01CX_0402 xanthine phosphoribosyltransferase; xanthine phosphoribosyltransferase 4128618 5741663 Cphy_3381 Clostridium phytofermentans ISDg xanthine phosphoribosyltransferase YP_001560473.1 4128034 R 357809 CDS YP_001560474.1 160881506 5741664 complement(4128852..4130012) 1 NC_010001.1 PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dsy:DSY4683 hypothetical protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 4130012 5741664 Cphy_3382 Clostridium phytofermentans ISDg D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit YP_001560474.1 4128852 R 357809 CDS YP_001560475.1 160881507 5741665 complement(4130031..4131194) 1 NC_010001.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 4131194 5741665 Cphy_3383 Clostridium phytofermentans ISDg phosphoserine aminotransferase YP_001560475.1 4130031 R 357809 CDS YP_001560476.1 160881508 5741666 complement(4131547..4132506) 1 NC_010001.1 hypothetical protein 4132506 5741666 Cphy_3384 Clostridium phytofermentans ISDg hypothetical protein YP_001560476.1 4131547 R 357809 CDS YP_001560477.1 160881509 5741667 complement(4132527..4132805) 1 NC_010001.1 hypothetical protein 4132805 5741667 Cphy_3385 Clostridium phytofermentans ISDg hypothetical protein YP_001560477.1 4132527 R 357809 CDS YP_001560478.1 160881510 5743660 complement(4132757..4133266) 1 NC_010001.1 hypothetical protein 4133266 5743660 Cphy_3386 Clostridium phytofermentans ISDg hypothetical protein YP_001560478.1 4132757 R 357809 CDS YP_001560479.1 160881511 5743661 complement(4133813..4134319) 1 NC_010001.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: cbf:CLI_0422 PAP2 family protein; PA-phosphatase like phosphoesterase 4134319 5743661 Cphy_3387 Clostridium phytofermentans ISDg PA-phosphatase like phosphoesterase YP_001560479.1 4133813 R 357809 CDS YP_001560480.1 160881512 5743665 complement(4140411..4145495) 1 NC_010001.1 PFAM: glycoside hydrolase family 16; Carbohydrate-binding CenC domain protein; Ig domain protein group 2 domain protein; KEGG: cth:Cthe_2809 glycoside hydrolase, family 16; glucan endo-1,3-beta-D-glucosidase 4145495 5743665 Cphy_3388 Clostridium phytofermentans ISDg glucan endo-1,3-beta-D-glucosidase YP_001560480.1 4140411 R 357809 CDS YP_001560481.1 160881513 5743666 complement(4145767..4146588) 1 NC_010001.1 PFAM: Formamidopyrimidine-DNA glycolase, H2TH DNA binding; KEGG: pdi:BDI_2011 formamidopyrimidine-DNA glycosylase; formamidopyrimidine-DNA glycolase 4146588 5743666 Cphy_3389 Clostridium phytofermentans ISDg formamidopyrimidine-DNA glycolase YP_001560481.1 4145767 R 357809 CDS YP_001560482.1 160881514 5743667 complement(4146977..4148716) 1 NC_010001.1 PFAM: FAD linked oxidase domain protein; KEGG: tde:TDE0138 alkyldihydroxyacetonephosphate synthase; FAD linked oxidase domain-containing protein 4148716 5743667 Cphy_3390 Clostridium phytofermentans ISDg FAD linked oxidase domain-containing protein YP_001560482.1 4146977 R 357809 CDS YP_001560483.1 160881515 5743668 complement(4148963..4150516) 1 NC_010001.1 PFAM: carbohydrate kinase FGGY; KEGG: fno:Fnod_0555 carbohydrate kinase FGGY; carbohydrate kinase FGGY 4150516 5743668 Cphy_3391 Clostridium phytofermentans ISDg carbohydrate kinase FGGY YP_001560483.1 4148963 R 357809 CDS YP_001560484.1 160881516 5743669 complement(4150548..4150904) 1 NC_010001.1 PFAM: protein of unknown function DUF1667; KEGG: cac:CAC1324 uncharacterized predected metal-binding protein; hypothetical protein 4150904 5743669 Cphy_3392 Clostridium phytofermentans ISDg hypothetical protein YP_001560484.1 4150548 R 357809 CDS YP_001560485.1 160881517 5743670 complement(4150901..4152223) 1 NC_010001.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tde:TDE0135 pyridine nucleotide-disulphide oxidoreductase family protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 4152223 5743670 Cphy_3393 Clostridium phytofermentans ISDg FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001560485.1 4150901 R 357809 CDS YP_001560486.1 160881518 5743671 complement(4152217..4153947) 1 NC_010001.1 PFAM: FAD dependent oxidoreductase; transport-associated; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: tde:TDE0134 oxidoreductase, FAD-dependent; FAD dependent oxidoreductase 4153947 5743671 Cphy_3394 Clostridium phytofermentans ISDg FAD dependent oxidoreductase YP_001560486.1 4152217 R 357809 CDS YP_001560487.1 160881519 5743672 4154158..4154739 1 NC_010001.1 PFAM: regulatory protein TetR; KEGG: dsy:DSY1100 hypothetical protein; TetR family transcriptional regulator 4154739 5743672 Cphy_3395 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001560487.1 4154158 D 357809 CDS YP_001560488.1 160881520 5743673 complement(4154932..4156332) 1 NC_010001.1 PFAM: glycoside hydrolase family 4; KEGG: csc:Csac_2748 glycoside hydrolase, family 4; glycoside hydrolase family protein 4156332 5743673 Cphy_3396 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001560488.1 4154932 R 357809 CDS YP_001560489.1 160881521 5743674 4156675..4157571 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: amt:Amet_0544 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 4157571 5743674 Cphy_3397 Clostridium phytofermentans ISDg AraC family transcriptional regulator YP_001560489.1 4156675 D 357809 CDS YP_001560490.1 160881522 5743675 complement(4157639..4159183) 1 NC_010001.1 PFAM: glycoside hydrolase family 43; KEGG: bha:BH3683 xylan beta-1,4-xylosidase; glycoside hydrolase family protein 4159183 5743675 Cphy_3398 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001560490.1 4157639 R 357809 CDS YP_001560491.1 160881523 5743676 complement(4159229..4161427) 1 NC_010001.1 KEGG: sus:Acid_0267 hypothetical protein; hypothetical protein 4161427 5743676 Cphy_3399 Clostridium phytofermentans ISDg hypothetical protein YP_001560491.1 4159229 R 357809 CDS YP_001560492.1 160881524 5743677 complement(4161559..4162410) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1119 multiple sugar transport system permease; binding-protein-dependent transport system inner membrane protein 4162410 5743677 Cphy_3400 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001560492.1 4161559 R 357809 CDS YP_001560493.1 160881525 5743678 complement(4162423..4163340) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0386 lactose ABC transporter permease; binding-protein-dependent transport system inner membrane protein 4163340 5743678 Cphy_3401 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001560493.1 4162423 R 357809 CDS YP_001560494.1 160881526 5743679 complement(4163470..4164825) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC0385 lactose ABC transporter substrate-binding protein; extracellular solute-binding protein 4164825 5743679 Cphy_3402 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001560494.1 4163470 R 357809 CDS YP_001560495.1 160881527 5743680 complement(4165352..4166407) 1 NC_010001.1 hypothetical protein 4166407 5743680 Cphy_3403 Clostridium phytofermentans ISDg hypothetical protein YP_001560495.1 4165352 R 357809 CDS YP_001560496.1 160881528 5743681 complement(4166683..4168008) 1 NC_010001.1 PFAM: glycoside hydrolase family 30; KEGG: stm:STM4426 activated by transcription factor SsrB, similar to Homo sapiens lysosomal glucosyl ceramidase; glycoside hydrolase family protein 4168008 5743681 Cphy_3404 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001560496.1 4166683 R 357809 CDS YP_001560497.1 160881529 5743682 complement(4168051..4168812) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_2545 response regulator receiver protein; two component AraC family transcriptional regulator 4168812 5743682 Cphy_3405 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001560497.1 4168051 R 357809 CDS YP_001560498.1 160881530 5743683 complement(4168817..4170628) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: csc:Csac_2517 integral membrane sensor signal transduction histidine kinase; histidine kinase internal region 4170628 5743683 Cphy_3406 Clostridium phytofermentans ISDg histidine kinase internal region YP_001560498.1 4168817 R 357809 CDS YP_001560499.1 160881531 5743684 complement(4170711..4171556) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE2347 sugar permeases; binding-protein-dependent transport system inner membrane protein 4171556 5743684 Cphy_3407 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001560499.1 4170711 R 357809 CDS YP_001560500.1 160881532 5743685 complement(4171564..4172445) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2515 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 4172445 5743685 Cphy_3408 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001560500.1 4171564 R 357809 CDS YP_001560501.1 160881533 5743686 complement(4172661..4174016) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: tte:TTE2345 sugar-binding periplasmic proteins/domains; extracellular solute-binding protein 4174016 5743686 Cphy_3409 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001560501.1 4172661 R 357809 CDS YP_001560502.1 160881534 5743687 complement(4174231..4174890) 1 NC_010001.1 KEGG: oih:OB1036 hypothetical protein; hypothetical protein 4174890 5743687 Cphy_3410 Clostridium phytofermentans ISDg hypothetical protein YP_001560502.1 4174231 R 357809 CDS YP_001560503.1 160881535 5743694 complement(4187460..4188086) 1 NC_010001.1 KEGG: mma:MM_2848 hypothetical protein; hypothetical protein 4188086 5743694 Cphy_3411 Clostridium phytofermentans ISDg hypothetical protein YP_001560503.1 4187460 R 357809 CDS YP_001560504.1 160881536 5743695 complement(4188117..4189334) 1 NC_010001.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 4189334 5743695 Cphy_3412 Clostridium phytofermentans ISDg oxidoreductase YP_001560504.1 4188117 R 357809 CDS YP_001560505.1 160881537 5743696 4189655..4190674 1 NC_010001.1 TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase; KEGG: lac:LBA1687 L-asparaginase; L-asparaginase, type I 4190674 5743696 Cphy_3413 Clostridium phytofermentans ISDg L-asparaginase, type I YP_001560505.1 4189655 D 357809 CDS YP_001560506.1 160881538 5743697 4191105..4192949 1 NC_010001.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: amt:Amet_4299 glucosamine--fructose-6-phosphate aminotransferase, isomerizing; glucosamine--fructose-6-phosphate aminotransferase 4192949 5743697 Cphy_3414 Clostridium phytofermentans ISDg glucosamine--fructose-6-phosphate aminotransferase YP_001560506.1 4191105 D 357809 CDS YP_001560507.1 160881539 5743698 complement(4193278..4194132) 1 NC_010001.1 KEGG: tva:TVAG_216880 PH domain containing protein Pfam: PH TolA Extensin_2 PROSITE: ARG_RICH GLN_RICH GLU_RICH PRO_RICH PH_DOMAIN; hypothetical protein 4194132 5743698 Cphy_3415 Clostridium phytofermentans ISDg hypothetical protein YP_001560507.1 4193278 R 357809 CDS YP_001560508.1 160881540 5743699 4194514..4195974 1 NC_010001.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: bpu:BPUM_1772 possible phospholipase D; phospholipase D/transphosphatidylase 4195974 5743699 Cphy_3416 Clostridium phytofermentans ISDg phospholipase D/transphosphatidylase YP_001560508.1 4194514 D 357809 CDS YP_001560509.1 160881541 5743700 complement(4196207..4197085) 1 NC_010001.1 PFAM: Hsp33 protein; KEGG: tte:TTE1737 disulfide bond chaperones of the HSP33 family; Hsp33 protein 4197085 5743700 Cphy_3417 Clostridium phytofermentans ISDg Hsp33 protein YP_001560509.1 4196207 R 357809 CDS YP_001560510.1 160881542 5743701 complement(4197151..4197978) 1 NC_010001.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cth:Cthe_1855 methyltransferase type 11; methyltransferase type 12 4197978 5743701 Cphy_3418 Clostridium phytofermentans ISDg methyltransferase type 12 YP_001560510.1 4197151 R 357809 CDS YP_001560511.1 160881543 5743702 complement(4198367..4199833) 1 NC_010001.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: amt:Amet_0591 xylulokinase; xylulokinase 4199833 5743702 Cphy_3419 Clostridium phytofermentans ISDg xylulokinase YP_001560511.1 4198367 R 357809 CDS YP_001560512.1 160881544 5743703 4200152..4201297 1 NC_010001.1 PFAM: ROK family protein; KEGG: cdf:CD3066 xylose repressor; ROK family protein 4201297 5743703 Cphy_3420 Clostridium phytofermentans ISDg ROK family protein YP_001560512.1 4200152 D 357809 CDS YP_001560513.1 160881545 5743704 complement(4201477..4202412) 1 NC_010001.1 PFAM: diacylglycerol kinase catalytic region; KEGG: oih:OB0767 hypothetical protein; diacylglycerol kinase catalytic subunit 4202412 5743704 Cphy_3421 Clostridium phytofermentans ISDg diacylglycerol kinase catalytic subunit YP_001560513.1 4201477 R 357809 CDS YP_001560514.1 160881546 5743533 complement(4202430..4202645) 1 NC_010001.1 KEGG: cth:Cthe_1856 small acid-soluble spore protein beta; hypothetical protein 4202645 5743533 Cphy_3422 Clostridium phytofermentans ISDg hypothetical protein YP_001560514.1 4202430 R 357809 CDS YP_001560515.1 160881547 5743534 complement(4202806..4206939) 1 NC_010001.1 TIGRFAM: recombination helicase AddA; PFAM: UvrD/REP helicase; KEGG: cpf:CPF_0025 ATP-dependent nuclease, subunit A; recombination helicase AddA 4206939 5743534 Cphy_3423 Clostridium phytofermentans ISDg recombination helicase AddA YP_001560515.1 4202806 R 357809 CDS YP_001560516.1 160881548 5743535 complement(4206896..4210411) 1 NC_010001.1 TIGRFAM: ATP-dependent nuclease subunit B; KEGG: cno:NT01CX_1235 ATP-dependent deoxyribonuclease subunit B; ATP-dependent nuclease subunit B 4210411 5743535 Cphy_3424 Clostridium phytofermentans ISDg ATP-dependent nuclease subunit B YP_001560516.1 4206896 R 357809 CDS YP_001560517.1 160881549 5743536 4210545..4211021 1 NC_010001.1 hypothetical protein 4211021 5743536 Cphy_3425 Clostridium phytofermentans ISDg hypothetical protein YP_001560517.1 4210545 D 357809 CDS YP_001560518.1 160881550 5743537 complement(4211213..4213156) 1 NC_010001.1 TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; KEGG: cbe:Cbei_1044 NAD+ synthetase; NAD+ synthetase 4213156 5743537 Cphy_3426 Clostridium phytofermentans ISDg NAD+ synthetase YP_001560518.1 4211213 R 357809 CDS YP_001560519.1 160881551 5743538 4213553..4214494 1 NC_010001.1 PFAM: Radical SAM domain protein; KEGG: cno:NT01CX_1001 uncharacterized Fe-S protein; radical SAM domain-containing protein 4214494 5743538 Cphy_3427 Clostridium phytofermentans ISDg radical SAM domain-containing protein YP_001560519.1 4213553 D 357809 CDS YP_001560520.1 160881552 5743540 complement(4214880..4216421) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dsy:DSY1197 hypothetical protein; integral membrane sensor signal transduction histidine kinase 4216421 5743540 Cphy_3428 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001560520.1 4214880 R 357809 CDS YP_001560521.1 160881553 5743541 complement(4216418..4217119) 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dsy:DSY1198 hypothetical protein; two component transcriptional regulator 4217119 5743541 Cphy_3429 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001560521.1 4216418 R 357809 CDS YP_001560522.1 160881554 5743542 4217431..4218156 1 NC_010001.1 PFAM: Ig domain protein group 2 domain protein; KEGG: cac:CAC2107 contains cell adhesion domain; Ig domain-containing protein 4218156 5743542 Cphy_3430 Clostridium phytofermentans ISDg Ig domain-containing protein YP_001560522.1 4217431 D 357809 CDS YP_001560523.1 160881555 5743543 4218411..4219820 1 NC_010001.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: cdf:CD2543 polysaccharide O-acetylase; membrane bound O-acyl transferase MBOAT family protein 4219820 5743543 Cphy_3431 Clostridium phytofermentans ISDg membrane bound O-acyl transferase MBOAT family protein YP_001560523.1 4218411 D 357809 CDS YP_001560524.1 160881556 5743544 4219925..4221250 1 NC_010001.1 KEGG: cdf:CD2542 hypothetical protein; hypothetical protein 4221250 5743544 Cphy_3432 Clostridium phytofermentans ISDg hypothetical protein YP_001560524.1 4219925 D 357809 CDS YP_001560525.1 160881557 5743545 4221530..4222705 1 NC_010001.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 4222705 5743545 Cphy_3433 Clostridium phytofermentans ISDg transposase IS204/IS1001/IS1096/IS1165 family protein YP_001560525.1 4221530 D 357809 CDS YP_001560526.1 160881558 5743546 complement(4222897..4226880) 1 NC_010001.1 PFAM: metallophosphoesterase; KEGG: sak:SAK_1901 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic precursor protein; metallophosphoesterase 4226880 5743546 Cphy_3434 Clostridium phytofermentans ISDg metallophosphoesterase YP_001560526.1 4222897 R 357809 CDS YP_001560527.1 160881559 5743547 complement(4227378..4227752) 1 NC_010001.1 KEGG: cdf:CD2800 hypothetical protein; hypothetical protein 4227752 5743547 Cphy_3435 Clostridium phytofermentans ISDg hypothetical protein YP_001560527.1 4227378 R 357809 CDS YP_001560528.1 160881560 5743548 4227884..4228747 1 NC_010001.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cth:Cthe_2747 PHP-like protein; phosphotransferase domain-containing protein 4228747 5743548 Cphy_3436 Clostridium phytofermentans ISDg phosphotransferase domain-containing protein YP_001560528.1 4227884 D 357809 CDS YP_001560529.1 160881561 5743549 complement(4228976..4229308) 1 NC_010001.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: cdf:CD2801 protein translocase subunit; preprotein translocase subunit YajC 4229308 5743549 Cphy_3437 Clostridium phytofermentans ISDg preprotein translocase subunit YajC YP_001560529.1 4228976 R 357809 CDS YP_001560530.1 160881562 5743550 complement(4229356..4230492) 1 NC_010001.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 4230492 tgt 5743550 tgt Clostridium phytofermentans ISDg queuine tRNA-ribosyltransferase YP_001560530.1 4229356 R 357809 CDS YP_001560531.1 160881563 5743551 complement(4230985..4231854) 1 NC_010001.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; SEC-C motif domain protein; KEGG: dsy:DSY2339 hypothetical protein; methionine aminopeptidase 4231854 5743551 Cphy_3439 Clostridium phytofermentans ISDg methionine aminopeptidase YP_001560531.1 4230985 R 357809 CDS YP_001560532.1 160881564 5743552 complement(4232124..4232762) 1 NC_010001.1 TIGRFAM: V-type ATPase, D subunit; PFAM: H+transporting two-sector ATPase D subunit; KEGG: ctc:CTC02326 V-type sodium ATP synthase subunit D; V-type ATPase subunit D 4232762 5743552 Cphy_3440 Clostridium phytofermentans ISDg V-type ATPase subunit D YP_001560532.1 4232124 R 357809 CDS YP_001560533.1 160881565 5743553 complement(4232767..4234152) 1 NC_010001.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 4234152 5743553 Cphy_3441 Clostridium phytofermentans ISDg V-type ATP synthase subunit B YP_001560533.1 4232767 R 357809 CDS YP_001560534.1 160881566 5743554 complement(4234166..4235932) 1 NC_010001.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 4235932 5743554 Cphy_3442 Clostridium phytofermentans ISDg V-type ATP synthase subunit A YP_001560534.1 4234166 R 357809 CDS YP_001560535.1 160881567 5743555 complement(4235925..4236512) 1 NC_010001.1 hypothetical protein 4236512 5743555 Cphy_3443 Clostridium phytofermentans ISDg hypothetical protein YP_001560535.1 4235925 R 357809 CDS YP_001560536.1 160881568 5743556 complement(4236528..4236836) 1 NC_010001.1 PFAM: Vacuolar H+transporting two-sector ATPase F subunit; KEGG: mth:MTH956 ATP synthase, subunit F; vacuolar H+transporting two-sector ATPase F subunit 4236836 5743556 Cphy_3444 Clostridium phytofermentans ISDg vacuolar H+transporting two-sector ATPase F subunit YP_001560536.1 4236528 R 357809 CDS YP_001560537.1 160881569 5743557 complement(4236922..4237368) 1 NC_010001.1 PFAM: H+transporting two-sector ATPase C subunit; KEGG: ctc:CTC02330 V-type sodium ATP synthase subunit K; H+transporting two-sector ATPase subunit C 4237368 5743557 Cphy_3445 Clostridium phytofermentans ISDg H+transporting two-sector ATPase subunit C YP_001560537.1 4236922 R 357809 CDS YP_001560538.1 160881570 5743558 complement(4237403..4239301) 1 NC_010001.1 PFAM: V-type ATPase 116 kDa subunit; KEGG: ctc:CTC02331 V-type sodium ATP synthase subunit I; V-type ATPase 116 kDa subunit 4239301 5743558 Cphy_3446 Clostridium phytofermentans ISDg V-type ATPase 116 kDa subunit YP_001560538.1 4237403 R 357809 CDS YP_001560539.1 160881571 5743559 complement(4239365..4240405) 1 NC_010001.1 PFAM: H+transporting two-sector ATPase C (AC39) subunit; KEGG: ctc:CTC02332 V-type sodium ATP synthase subunit C; H+transporting two-sector ATPase C (AC39) subunit 4240405 5743559 Cphy_3447 Clostridium phytofermentans ISDg H+transporting two-sector ATPase C (AC39) subunit YP_001560539.1 4239365 R 357809 CDS YP_001560540.1 160881572 5743560 complement(4240410..4240721) 1 NC_010001.1 hypothetical protein 4240721 5743560 Cphy_3448 Clostridium phytofermentans ISDg hypothetical protein YP_001560540.1 4240410 R 357809 CDS YP_001560541.1 160881573 5743561 complement(4242103..4243116) 1 NC_010001.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 4243116 5743561 Cphy_3449 Clostridium phytofermentans ISDg asparagine synthetase AsnA YP_001560541.1 4242103 R 357809 CDS YP_001560542.1 160881574 5743562 complement(4243489..4245483) 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: amt:Amet_1575 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4245483 5743562 Cphy_3450 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001560542.1 4243489 R 357809 CDS YP_001560543.1 160881575 5743563 4246002..4246562 1 NC_010001.1 PFAM: integrase family protein; KEGG: cth:Cthe_2286 phage integrase; integrase family protein 4246562 5743563 Cphy_3451 Clostridium phytofermentans ISDg integrase family protein YP_001560543.1 4246002 D 357809 CDS YP_001560544.1 160881576 5743564 complement(4247037..4248374) 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbf:CLI_2170 MATE efflux family protein; MATE efflux family protein 4248374 5743564 Cphy_3452 Clostridium phytofermentans ISDg MATE efflux family protein YP_001560544.1 4247037 R 357809 CDS YP_001560545.1 160881577 5743566 complement(4249140..4250549) 1 NC_010001.1 PFAM: FAD dependent oxidoreductase; KEGG: cbe:Cbei_1910 FAD dependent oxidoreductase; FAD dependent oxidoreductase 4250549 5743566 Cphy_3453 Clostridium phytofermentans ISDg FAD dependent oxidoreductase YP_001560545.1 4249140 R 357809 CDS YP_001560546.1 160881578 5743567 complement(4250828..4252570) 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC1600 methyl-accepting chemotaxis-like protein (chemotaxis sensory transducer); methyl-accepting chemotaxis sensory transducer 4252570 5743567 Cphy_3454 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001560546.1 4250828 R 357809 CDS YP_001560547.1 160881579 5743569 complement(4254705..4256462) 1 NC_010001.1 PFAM: Pyrrolo-quinoline quinone; KEGG: cth:Cthe_0739 hypothetical protein; Pyrrolo-quinoline quinone 4256462 5743569 Cphy_3457 Clostridium phytofermentans ISDg Pyrrolo-quinoline quinone YP_001560547.1 4254705 R 357809 CDS YP_001560548.1 160881580 5743570 complement(4256803..4257216) 1 NC_010001.1 hypothetical protein 4257216 5743570 Cphy_3458 Clostridium phytofermentans ISDg hypothetical protein YP_001560548.1 4256803 R 357809 CDS YP_001560549.1 160881581 5743571 complement(4257281..4258639) 1 NC_010001.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4258639 5743571 Cphy_3459 Clostridium phytofermentans ISDg DNA repair protein RadA YP_001560549.1 4257281 R 357809 CDS YP_001560550.1 160881582 5743572 complement(4258683..4259096) 1 NC_010001.1 hypothetical protein 4259096 5743572 Cphy_3460 Clostridium phytofermentans ISDg hypothetical protein YP_001560550.1 4258683 R 357809 CDS YP_001560551.1 160881583 5743573 complement(4259366..4261840) 1 NC_010001.1 PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1789 ATPase AAA-2; ATPase 4261840 5743573 Cphy_3461 Clostridium phytofermentans ISDg ATPase YP_001560551.1 4259366 R 357809 CDS YP_001560552.1 160881584 5743574 complement(4261859..4262890) 1 NC_010001.1 PFAM: ATP:guanido phosphotransferase; KEGG: cth:Cthe_1790 ATP:guanido phosphotransferase; ATP:guanido phosphotransferase 4262890 5743574 Cphy_3462 Clostridium phytofermentans ISDg ATP:guanido phosphotransferase YP_001560552.1 4261859 R 357809 CDS YP_001560553.1 160881585 5743575 complement(4262906..4263427) 1 NC_010001.1 PFAM: UvrB/UvrC protein; KEGG: csc:Csac_2369 UvrB/UvrC protein; UvrB/UvrC protein 4263427 5743575 Cphy_3463 Clostridium phytofermentans ISDg UvrB/UvrC protein YP_001560553.1 4262906 R 357809 CDS YP_001560554.1 160881586 5743576 complement(4263438..4263818) 1 NC_010001.1 PFAM: regulatory protein GntR HTH; KEGG: swo:Swol_1390 transcriptional regulator, GntR family; GntR family transcriptional regulator 4263818 5743576 Cphy_3464 Clostridium phytofermentans ISDg GntR family transcriptional regulator YP_001560554.1 4263438 R 357809 CDS YP_001560555.1 160881587 5743577 complement(4264057..4265307) 1 NC_010001.1 KEGG: sth:STH2197 S-layer associated protein; hypothetical protein 4265307 5743577 Cphy_3465 Clostridium phytofermentans ISDg hypothetical protein YP_001560555.1 4264057 R 357809 CDS YP_001560556.1 160881588 5743578 complement(4265471..4269316) 1 NC_010001.1 PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: cpf:CPF_1439 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain protein, possible enterotoxin; SH3 type 3 domain-containing protein 4269316 5743578 Cphy_3466 Clostridium phytofermentans ISDg SH3 type 3 domain-containing protein YP_001560556.1 4265471 R 357809 CDS YP_001560557.1 160881589 5743579 complement(4269682..4270953) 1 NC_010001.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 4270953 5743579 Cphy_3467 Clostridium phytofermentans ISDg phosphoribosylamine--glycine ligase YP_001560557.1 4269682 R 357809 CDS YP_001560558.1 160881590 5743580 complement(4271009..4271632) 1 NC_010001.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: cth:Cthe_1247 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 4271632 5743580 Cphy_3468 Clostridium phytofermentans ISDg phosphoribosylglycinamide formyltransferase YP_001560558.1 4271009 R 357809 CDS YP_001560559.1 160881591 5743581 complement(4271626..4272651) 1 NC_010001.1 KEGG: btl:BALH_0290 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; phosphoribosylformylglycinamidine cyclo-ligase 4272651 5743581 Cphy_3469 Clostridium phytofermentans ISDg phosphoribosylformylglycinamidine cyclo-ligase YP_001560559.1 4271626 R 357809 CDS YP_001560560.1 160881592 5743582 complement(4273097..4275691) 1 NC_010001.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: drm:Dred_2967 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase 4275691 5743582 Cphy_3470 Clostridium phytofermentans ISDg FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001560560.1 4273097 R 357809 CDS YP_001560561.1 160881593 5743583 complement(4276305..4276811) 1 NC_010001.1 KEGG: tpt:Tpet_0474 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 4276811 5743583 Cphy_3471 Clostridium phytofermentans ISDg phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001560561.1 4276305 R 357809 CDS YP_001560562.1 160881594 5743584 complement(4276911..4278992) 1 NC_010001.1 KEGG: tme:Tmel_0149 peptidase M29, aminopeptidase II; leucyl aminopeptidase 4278992 5743584 Cphy_3472 Clostridium phytofermentans ISDg leucyl aminopeptidase YP_001560562.1 4276911 R 357809 CDS YP_001560563.1 160881595 5743585 complement(4279075..4279398) 1 NC_010001.1 hypothetical protein 4279398 5743585 Cphy_3473 Clostridium phytofermentans ISDg hypothetical protein YP_001560563.1 4279075 R 357809 CDS YP_001560564.1 160881596 5743586 complement(4279440..4279886) 1 NC_010001.1 PFAM: VanZ family protein; KEGG: cac:CAC0829 uncharacterized conserved membrane protein, similar to MDR (VANZ) ORF of Enterococcus; VanZ family protein 4279886 5743586 Cphy_3474 Clostridium phytofermentans ISDg VanZ family protein YP_001560564.1 4279440 R 357809 CDS YP_001560565.1 160881597 5743587 complement(4280248..4282776) 1 NC_010001.1 PFAM: Ig domain protein group 2 domain protein; KEGG: dsy:DSY0726 hypothetical protein; Ig domain-containing protein 4282776 5743587 Cphy_3475 Clostridium phytofermentans ISDg Ig domain-containing protein YP_001560565.1 4280248 R 357809 CDS YP_001560566.1 160881598 5743588 complement(4283044..4285482) 1 NC_010001.1 KEGG: cth:Cthe_0215 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta 4285482 5743588 Cphy_3476 Clostridium phytofermentans ISDg phenylalanyl-tRNA synthetase subunit beta YP_001560566.1 4283044 R 357809 CDS YP_001560567.1 160881599 5743589 complement(4285529..4286548) 1 NC_010001.1 TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: cbe:Cbei_1573 phenylalanyl-tRNA synthetase, alpha subunit; phenylalanyl-tRNA synthetase subunit alpha 4286548 5743589 Cphy_3477 Clostridium phytofermentans ISDg phenylalanyl-tRNA synthetase subunit alpha YP_001560567.1 4285529 R 357809 CDS YP_001560568.1 160881600 5743590 4287167..4288036 1 NC_010001.1 PFAM: ribonuclease BN; KEGG: cpr:CPR_0272 YihY family protein; ribonuclease BN 4288036 5743590 Cphy_3478 Clostridium phytofermentans ISDg ribonuclease BN YP_001560568.1 4287167 D 357809 CDS YP_001560569.1 160881601 5743591 complement(4288304..4290862) 1 NC_010001.1 TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: fnu:FN0806 SpoIID homolog; SpoIID/LytB domain-containing protein 4290862 5743591 Cphy_3479 Clostridium phytofermentans ISDg SpoIID/LytB domain-containing protein YP_001560569.1 4288304 R 357809 CDS YP_001560570.1 160881602 5743592 complement(4291292..4292287) 1 NC_010001.1 KEGG: mta:Moth_1919 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 4292287 5743592 Cphy_3480 Clostridium phytofermentans ISDg tryptophanyl-tRNA synthetase YP_001560570.1 4291292 R 357809 CDS YP_001560571.1 160881603 5743593 complement(4292775..4293530) 1 NC_010001.1 PFAM: dihydrodipicolinate reductase; KEGG: cth:Cthe_0963 dihydrodipicolinate reductase; dihydrodipicolinate reductase 4293530 5743593 Cphy_3481 Clostridium phytofermentans ISDg dihydrodipicolinate reductase YP_001560571.1 4292775 R 357809 CDS YP_001560572.1 160881604 5743594 complement(4293665..4294549) 1 NC_010001.1 KEGG: tte:TTE0832 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase 4294549 5743594 Cphy_3482 Clostridium phytofermentans ISDg dihydrodipicolinate synthase YP_001560572.1 4293665 R 357809 CDS YP_001560573.1 160881605 5743595 complement(4295064..4295699) 1 NC_010001.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 4295699 5743595 Cphy_3483 Clostridium phytofermentans ISDg single-stranded DNA-binding protein YP_001560573.1 4295064 R 357809 CDS YP_001560574.1 160881606 5743596 4296587..4298413 1 NC_010001.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: cth:Cthe_1007 GTP-binding protein TypA; GTP-binding protein TypA 4298413 5743596 Cphy_3484 Clostridium phytofermentans ISDg GTP-binding protein TypA YP_001560574.1 4296587 D 357809 CDS YP_001560575.1 160881607 5743597 complement(4298475..4299581) 1 NC_010001.1 TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ctc:CTC00423 peptidase T; peptidase T-like protein 4299581 5743597 Cphy_3485 Clostridium phytofermentans ISDg peptidase T-like protein YP_001560575.1 4298475 R 357809 CDS YP_001560576.1 160881608 5743598 complement(4299694..4300455) 1 NC_010001.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: cth:Cthe_3110 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD binding protein 4300455 5743598 Cphy_3486 Clostridium phytofermentans ISDg UBA/THIF-type NAD/FAD binding protein YP_001560576.1 4299694 R 357809 CDS YP_001560577.1 160881609 5743599 complement(4300804..4301628) 1 NC_010001.1 KEGG: cpr:CPR_0353 prophage ps3 protein 01; hypothetical protein 4301628 5743599 Cphy_3487 Clostridium phytofermentans ISDg hypothetical protein YP_001560577.1 4300804 R 357809 CDS YP_001560578.1 160881610 5743600 complement(4301714..4302838) 1 NC_010001.1 TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118; KEGG: cth:Cthe_1013 protein of unknown function UPF0118; sporulation integral membrane protein YtvI 4302838 5743600 Cphy_3488 Clostridium phytofermentans ISDg sporulation integral membrane protein YtvI YP_001560578.1 4301714 R 357809 CDS YP_001560579.1 160881611 5743601 complement(4303072..4303914) 1 NC_010001.1 PFAM: ABC-3 protein; KEGG: fnu:FN1810 manganese transport system membrane protein mntB; ABC-3 protein 4303914 5743601 Cphy_3489 Clostridium phytofermentans ISDg ABC-3 protein YP_001560579.1 4303072 R 357809 CDS YP_001560580.1 160881612 5743602 complement(4303959..4304774) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_0077 zinc ABC transporter, ATP-binding protein; ABC transporter 4304774 5743602 Cphy_3490 Clostridium phytofermentans ISDg ABC transporter YP_001560580.1 4303959 R 357809 CDS YP_001560581.1 160881613 5743603 complement(4304836..4305807) 1 NC_010001.1 PFAM: periplasmic solute binding protein; KEGG: cth:Cthe_0547 periplasmic solute binding protein; periplasmic solute binding protein 4305807 5743603 Cphy_3491 Clostridium phytofermentans ISDg periplasmic solute binding protein YP_001560581.1 4304836 R 357809 CDS YP_001560582.1 160881614 5743604 complement(4305975..4306856) 1 NC_010001.1 PFAM: protein of unknown function DUF368; KEGG: oih:OB0592 hypothetical protein; hypothetical protein 4306856 5743604 Cphy_3492 Clostridium phytofermentans ISDg hypothetical protein YP_001560582.1 4305975 R 357809 CDS YP_001560583.1 160881615 5743605 complement(4308034..4309122) 1 NC_010001.1 PFAM: acyltransferase 3; KEGG: sgl:SG0764 hypothetical protein; acyltransferase 4309122 5743605 Cphy_3493 Clostridium phytofermentans ISDg acyltransferase YP_001560583.1 4308034 R 357809 CDS YP_001560584.1 160881616 5743606 complement(4309695..4311578) 1 NC_010001.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: lsl:LSL_0995 UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase; polysaccharide biosynthesis protein CapD 4311578 5743606 Cphy_3494 Clostridium phytofermentans ISDg polysaccharide biosynthesis protein CapD YP_001560584.1 4309695 R 357809 CDS YP_001560585.1 160881617 5743607 4311719..4313572 1 NC_010001.1 KEGG: dsy:DSY3328 hypothetical protein; hypothetical protein 4313572 5743607 Cphy_3495 Clostridium phytofermentans ISDg hypothetical protein YP_001560585.1 4311719 D 357809 CDS YP_001560586.1 160881618 5743609 complement(4315244..4316557) 1 NC_010001.1 PFAM: O-antigen polymerase; KEGG: fjo:Fjoh_2813 O-antigen polymerase; O-antigen polymerase 4316557 5743609 Cphy_3498 Clostridium phytofermentans ISDg O-antigen polymerase YP_001560586.1 4315244 R 357809 CDS YP_001560587.1 160881619 5743610 complement(4316560..4317915) 1 NC_010001.1 PFAM: polysaccharide biosynthesis protein; KEGG: bth:BT_0390 O-antigen export protein; polysaccharide biosynthesis protein 4317915 5743610 Cphy_3499 Clostridium phytofermentans ISDg polysaccharide biosynthesis protein YP_001560587.1 4316560 R 357809 CDS YP_001560588.1 160881620 5743611 complement(4318014..4319033) 1 NC_010001.1 KEGG: ana:all4429 similar to hemolytic protein HlpA; hemolytic protein HlpA-like protein 4319033 5743611 Cphy_3500 Clostridium phytofermentans ISDg hemolytic protein HlpA-like protein YP_001560588.1 4318014 R 357809 CDS YP_001560589.1 160881621 5743612 complement(4319109..4320365) 1 NC_010001.1 PFAM: glycosyl transferase group 1; KEGG: eba:ebA5884 hypothetical protein; group 1 glycosyl transferase 4320365 5743612 Cphy_3501 Clostridium phytofermentans ISDg group 1 glycosyl transferase YP_001560589.1 4319109 R 357809 CDS YP_001560590.1 160881622 5743613 complement(4320368..4321492) 1 NC_010001.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: fps:FP1285 FnlC protein involved in UDP-L-FucpNAc biosynthesis (a nucleotide sugar precursor for antigen-O biosynthesis) probable UDP-2-acetamino-2,6-dideoxy-L-talose 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 4321492 5743613 Cphy_3502 Clostridium phytofermentans ISDg UDP-N-acetylglucosamine 2-epimerase YP_001560590.1 4320368 R 357809 CDS YP_001560591.1 160881623 5743614 complement(4321497..4322606) 1 NC_010001.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: drm:Dred_3032 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 4322606 5743614 Cphy_3503 Clostridium phytofermentans ISDg NAD-dependent epimerase/dehydratase YP_001560591.1 4321497 R 357809 CDS YP_001560592.1 160881624 5743615 complement(4322606..4323628) 1 NC_010001.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: drm:Dred_3033 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 4323628 5743615 Cphy_3504 Clostridium phytofermentans ISDg polysaccharide biosynthesis protein CapD YP_001560592.1 4322606 R 357809 CDS YP_001560593.1 160881625 5743616 complement(4323651..4324862) 1 NC_010001.1 PFAM: glycosyl transferase group 1; KEGG: pdi:BDI_0575 glycosyltransferase family 4; group 1 glycosyl transferase 4324862 5743616 Cphy_3505 Clostridium phytofermentans ISDg group 1 glycosyl transferase YP_001560593.1 4323651 R 357809 CDS YP_001560594.1 160881626 5743617 complement(4324883..4325740) 1 NC_010001.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: bha:BH3715 UDP-glucose 4-epimerase (galactowaldenases); NAD-dependent epimerase/dehydratase 4325740 5743617 Cphy_3506 Clostridium phytofermentans ISDg NAD-dependent epimerase/dehydratase YP_001560594.1 4324883 R 357809 CDS YP_001560595.1 160881627 5743618 complement(4325737..4326372) 1 NC_010001.1 PFAM: sugar transferase; KEGG: amt:Amet_0201 sugar transferase; sugar transferase 4326372 5743618 Cphy_3507 Clostridium phytofermentans ISDg sugar transferase YP_001560595.1 4325737 R 357809 CDS YP_001560596.1 160881628 5743619 complement(4327062..4328393) 1 NC_010001.1 PFAM: integrase family protein; KEGG: mta:Moth_1796 phage integrase; integrase family protein 4328393 5743619 Cphy_3508 Clostridium phytofermentans ISDg integrase family protein YP_001560596.1 4327062 R 357809 CDS YP_001560597.1 160881629 5743620 4328740..4331193 1 NC_010001.1 PFAM: Ig domain protein group 2 domain protein; KEGG: bcy:Bcer98_0714 Ig domain protein group 2 domain protein; Ig domain-containing protein 4331193 5743620 Cphy_3509 Clostridium phytofermentans ISDg Ig domain-containing protein YP_001560597.1 4328740 D 357809 CDS YP_001560598.1 160881630 5743621 complement(4331261..4333696) 1 NC_010001.1 PFAM: Ig domain protein group 2 domain protein; KEGG: bat:BAS0841 S-layer protein SAP; Ig domain-containing protein 4333696 5743621 Cphy_3510 Clostridium phytofermentans ISDg Ig domain-containing protein YP_001560598.1 4331261 R 357809 CDS YP_001560599.1 160881631 5743622 complement(4334543..4336042) 1 NC_010001.1 KEGG: cac:CAC0999 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; threonine synthase 4336042 5743622 Cphy_3511 Clostridium phytofermentans ISDg threonine synthase YP_001560599.1 4334543 R 357809 CDS YP_001560600.1 160881632 5743623 complement(4336348..4337550) 1 NC_010001.1 PFAM: cell wall hydrolase SleB; KEGG: cno:NT01CX_1494 LysM-repeat proteins and domains; cell wall hydrolase SleB 4337550 5743623 Cphy_3512 Clostridium phytofermentans ISDg cell wall hydrolase SleB YP_001560600.1 4336348 R 357809 CDS YP_001560601.1 160881633 5743624 4338234..4339049 1 NC_010001.1 hypothetical protein 4339049 5743624 Cphy_3513 Clostridium phytofermentans ISDg hypothetical protein YP_001560601.1 4338234 D 357809 CDS YP_001560602.1 160881634 5743625 complement(4339253..4340167) 1 NC_010001.1 KEGG: pth:PTH_0772 hypothetical membrane protein; hypothetical protein 4340167 5743625 Cphy_3514 Clostridium phytofermentans ISDg hypothetical protein YP_001560602.1 4339253 R 357809 CDS YP_001560603.1 160881635 5743626 complement(4340182..4341123) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_1723 ABC transporter ATP-binding protein; ABC transporter 4341123 5743626 Cphy_3515 Clostridium phytofermentans ISDg ABC transporter YP_001560603.1 4340182 R 357809 CDS YP_001560604.1 160881636 5743627 complement(4341214..4343979) 1 NC_010001.1 KEGG: csc:Csac_0698 hypothetical protein; hypothetical protein 4343979 5743627 Cphy_3516 Clostridium phytofermentans ISDg hypothetical protein YP_001560604.1 4341214 R 357809 CDS YP_001560605.1 160881637 5743628 complement(4343998..4345221) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: btk:BT9727_4582 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 4345221 5743628 Cphy_3517 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001560605.1 4343998 R 357809 CDS YP_001560606.1 160881638 5743629 complement(4345282..4345986) 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbf:CLI_0437 DNA-binding response regulator; two component transcriptional regulator 4345986 5743629 Cphy_3518 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001560606.1 4345282 R 357809 CDS YP_001560607.1 160881639 5743631 complement(4346979..4348640) 1 NC_010001.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: cth:Cthe_0332 phosphoribulokinase/uridine kinase; phosphoribulokinase/uridine kinase 4348640 5743631 Cphy_3519 Clostridium phytofermentans ISDg phosphoribulokinase/uridine kinase YP_001560607.1 4346979 R 357809 CDS YP_001560608.1 160881640 5743632 complement(4348806..4349561) 1 NC_010001.1 PFAM: protein of unknown function DUF633; KEGG: cac:CAC1302 predicted SAM-dependent methyltransferase; hypothetical protein 4349561 5743632 Cphy_3520 Clostridium phytofermentans ISDg hypothetical protein YP_001560608.1 4348806 R 357809 CDS YP_001560609.1 160881641 5743633 complement(4349614..4350732) 1 NC_010001.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: Bacterio-opsin activator HTH domain protein; sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: cth:Cthe_0895 RNA polymerase, sigma 38 subunit, RpoS; RpoD family RNA polymerase sigma factor 4350732 5743633 Cphy_3521 Clostridium phytofermentans ISDg RpoD family RNA polymerase sigma factor YP_001560609.1 4349614 R 357809 CDS YP_001560610.1 160881642 5743634 complement(4350794..4352584) 1 NC_010001.1 KEGG: cth:Cthe_0896 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase 4352584 5743634 Cphy_3522 Clostridium phytofermentans ISDg DNA primase YP_001560610.1 4350794 R 357809 CDS YP_001560611.1 160881643 5743635 complement(4352798..4353823) 1 NC_010001.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 4353823 5743635 Cphy_3523 Clostridium phytofermentans ISDg deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_001560611.1 4352798 R 357809 CDS YP_001560612.1 160881644 5743636 complement(4354493..4356586) 1 NC_010001.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: btl:BALH_4382 ferrous iron transport protein B; ferrous iron transport protein B 4356586 5743636 Cphy_3524 Clostridium phytofermentans ISDg ferrous iron transport protein B YP_001560612.1 4354493 R 357809 CDS YP_001560613.1 160881645 5743637 complement(4356623..4356844) 1 NC_010001.1 PFAM: FeoA family protein; FeoA family protein 4356844 5743637 Cphy_3525 Clostridium phytofermentans ISDg FeoA family protein YP_001560613.1 4356623 R 357809 CDS YP_001560614.1 160881646 5743638 complement(4357165..4357539) 1 NC_010001.1 KEGG: cbe:Cbei_3296 hypothetical protein; hypothetical protein 4357539 5743638 Cphy_3526 Clostridium phytofermentans ISDg hypothetical protein YP_001560614.1 4357165 R 357809 CDS YP_001560615.1 160881647 5743639 complement(4357590..4357802) 1 NC_010001.1 KEGG: cbe:Cbei_3297 hypothetical protein; hypothetical protein 4357802 5743639 Cphy_3527 Clostridium phytofermentans ISDg hypothetical protein YP_001560615.1 4357590 R 357809 CDS YP_001560616.1 160881648 5743640 complement(4358111..4358503) 1 NC_010001.1 PFAM: response regulator receiver; KEGG: cth:Cthe_0805 response regulator receiver protein; response regulator receiver protein 4358503 5743640 Cphy_3528 Clostridium phytofermentans ISDg response regulator receiver protein YP_001560616.1 4358111 R 357809 CDS YP_001560617.1 160881649 5743641 complement(4358729..4359778) 1 NC_010001.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 4359778 5743641 Cphy_3529 Clostridium phytofermentans ISDg histidinol-phosphate aminotransferase YP_001560617.1 4358729 R 357809 CDS YP_001560618.1 160881650 5743642 complement(4359840..4361027) 1 NC_010001.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 4361027 5743642 Cphy_3530 Clostridium phytofermentans ISDg aspartate aminotransferase YP_001560618.1 4359840 R 357809 CDS YP_001560619.1 160881651 5743643 complement(4361314..4361943) 1 NC_010001.1 KEGG: cbe:Cbei_4066 hypothetical protein; hypothetical protein 4361943 5743643 Cphy_3531 Clostridium phytofermentans ISDg hypothetical protein YP_001560619.1 4361314 R 357809 CDS YP_001560620.1 160881652 5743644 complement(4361951..4362661) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pth:PTH_0073 ABC-type branched-chain amino acid transport systems, ATPase component; ABC transporter 4362661 5743644 Cphy_3532 Clostridium phytofermentans ISDg ABC transporter YP_001560620.1 4361951 R 357809 CDS YP_001560621.1 160881653 5743645 complement(4362683..4363441) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_0446 ATP binding protein of ABC transporter for branched-chain amino acids; ABC transporter 4363441 5743645 Cphy_3533 Clostridium phytofermentans ISDg ABC transporter YP_001560621.1 4362683 R 357809 CDS YP_001560622.1 160881654 5743646 complement(4363443..4364444) 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: drm:Dred_2238 inner-membrane translocator; inner-membrane translocator 4364444 5743646 Cphy_3534 Clostridium phytofermentans ISDg inner-membrane translocator YP_001560622.1 4363443 R 357809 CDS YP_001560623.1 160881655 5743647 complement(4364454..4365329) 1 NC_010001.1 PFAM: inner-membrane translocator; KEGG: dsy:DSY5025 hypothetical protein; inner-membrane translocator 4365329 5743647 Cphy_3535 Clostridium phytofermentans ISDg inner-membrane translocator YP_001560623.1 4364454 R 357809 CDS YP_001560624.1 160881656 5743648 complement(4365578..4366744) 1 NC_010001.1 PFAM: Extracellular ligand-binding receptor; KEGG: fnu:FN1432 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein; extracellular ligand-binding receptor 4366744 5743648 Cphy_3536 Clostridium phytofermentans ISDg extracellular ligand-binding receptor YP_001560624.1 4365578 R 357809 CDS YP_001560625.1 160881657 5743649 complement(4367016..4367306) 1 NC_010001.1 hypothetical protein 4367306 5743649 Cphy_3537 Clostridium phytofermentans ISDg hypothetical protein YP_001560625.1 4367016 R 357809 CDS YP_001560626.1 160881658 5743650 complement(4367375..4369090) 1 NC_010001.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cpe:CPE2561 probable Ser-type protease; peptidase S8/S53 subtilisin kexin sedolisin 4369090 5743650 Cphy_3538 Clostridium phytofermentans ISDg peptidase S8/S53 subtilisin kexin sedolisin YP_001560626.1 4367375 R 357809 CDS YP_001560627.1 160881659 5743651 complement(4369225..4370235) 1 NC_010001.1 KEGG: cac:CAC2045 secreted protein containing domain of murein hydrolase (MltA homolog); hypothetical protein 4370235 5743651 Cphy_3539 Clostridium phytofermentans ISDg hypothetical protein YP_001560627.1 4369225 R 357809 CDS YP_001560628.1 160881660 5743652 complement(4370259..4371707) 1 NC_010001.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 4371707 clpX 5743652 clpX Clostridium phytofermentans ISDg ATP-dependent protease ATP-binding subunit ClpX YP_001560628.1 4370259 R 357809 CDS YP_001560629.1 160881661 5743653 complement(4371974..4372375) 1 NC_010001.1 KEGG: cbe:Cbei_4697 Zn-finger containing protein; Zn-finger containing protein 4372375 5743653 Cphy_3541 Clostridium phytofermentans ISDg Zn-finger containing protein YP_001560629.1 4371974 R 357809 CDS YP_001560630.1 160881662 5743654 complement(4372639..4374060) 1 NC_010001.1 KEGG: dsy:DSY3322 hypothetical protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; undecaprenyl-phosphate glucose phosphotransferase 4374060 5743654 Cphy_3542 Clostridium phytofermentans ISDg undecaprenyl-phosphate glucose phosphotransferase YP_001560630.1 4372639 R 357809 CDS YP_001560631.1 160881663 5743655 4374543..4376276 1 NC_010001.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: chy:CHY_0655 serine protease Do; 2-alkenal reductase 4376276 5743655 Cphy_3543 Clostridium phytofermentans ISDg 2-alkenal reductase YP_001560631.1 4374543 D 357809 CDS YP_001560632.1 160881664 5743656 complement(4376510..4377697) 1 NC_010001.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: cpe:CPE0482 probable glycero-phosphotransferase; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 4377697 5743656 Cphy_3544 Clostridium phytofermentans ISDg CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_001560632.1 4376510 R 357809 CDS YP_001560633.1 160881665 5743657 complement(4377694..4378869) 1 NC_010001.1 KEGG: lca:LSEI_1134 glycosyltransferase; glycosyltransferase 4378869 5743657 Cphy_3545 Clostridium phytofermentans ISDg glycosyltransferase YP_001560633.1 4377694 R 357809 CDS YP_001560634.1 160881666 5743658 complement(4378896..4379639) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msi:Msm_1326 polysaccharide/polyol phosphate ABC transporter, ATPase component; ABC transporter 4379639 5743658 Cphy_3546 Clostridium phytofermentans ISDg ABC transporter YP_001560634.1 4378896 R 357809 CDS YP_001560635.1 160881667 5743659 complement(4379866..4380642) 1 NC_010001.1 PFAM: ABC-2 type transporter; KEGG: mst:Msp_0204 predicted ABC-type polysaccharide/polyol phosphate export system, permease; ABC-2 type transporter 4380642 5743659 Cphy_3547 Clostridium phytofermentans ISDg ABC-2 type transporter YP_001560635.1 4379866 R 357809 CDS YP_001560636.1 160881668 5742952 complement(4380908..4382578) 1 NC_010001.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: cac:CAC0273 2-isopropylmalate synthase; 2-isopropylmalate synthase 4382578 5742952 Cphy_3548 Clostridium phytofermentans ISDg 2-isopropylmalate synthase YP_001560636.1 4380908 R 357809 CDS YP_001560637.1 160881669 5742953 complement(4382754..4383056) 1 NC_010001.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: ajs:Ajs_0296 phosphotransferase system, phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr 4383056 5742953 Cphy_3549 Clostridium phytofermentans ISDg phosphotransferase system, phosphocarrier protein HPr YP_001560637.1 4382754 R 357809 CDS YP_001560638.1 160881670 5742954 complement(4383170..4384411) 1 NC_010001.1 KEGG: tte:TTE2207 hypothetical protein; hypothetical protein 4384411 5742954 Cphy_3550 Clostridium phytofermentans ISDg hypothetical protein YP_001560638.1 4383170 R 357809 CDS YP_001560639.1 160881671 5742955 complement(4384392..4385273) 1 NC_010001.1 PFAM: protein of unknown function DUF147; KEGG: csc:Csac_1183 protein of unknown function DUF147; hypothetical protein 4385273 5742955 Cphy_3551 Clostridium phytofermentans ISDg hypothetical protein YP_001560639.1 4384392 R 357809 CDS YP_001560640.1 160881672 5742956 complement(4385301..4386362) 1 NC_010001.1 hypothetical protein 4386362 5742956 Cphy_3552 Clostridium phytofermentans ISDg hypothetical protein YP_001560640.1 4385301 R 357809 CDS YP_001560641.1 160881673 5742957 complement(4386359..4386790) 1 NC_010001.1 hypothetical protein 4386790 5742957 Cphy_3553 Clostridium phytofermentans ISDg hypothetical protein YP_001560641.1 4386359 R 357809 CDS YP_001560642.1 160881674 5742958 complement(4387098..4387310) 1 NC_010001.1 KEGG: gka:GKP06 hypothetical protein; hypothetical protein 4387310 5742958 Cphy_3554 Clostridium phytofermentans ISDg hypothetical protein YP_001560642.1 4387098 R 357809 CDS YP_001560643.1 160881675 5742959 complement(4387344..4388246) 1 NC_010001.1 PFAM: beta-lactamase domain protein; KEGG: ctc:CTC00821 ComE-like protein, metallo beta-lactamase superfamily hydrolase; beta-lactamase domain-containing protein 4388246 5742959 Cphy_3555 Clostridium phytofermentans ISDg beta-lactamase domain-containing protein YP_001560643.1 4387344 R 357809 CDS YP_001560644.1 160881676 5742960 complement(4389160..4390671) 1 NC_010001.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: csc:Csac_0828 lysyl-tRNA synthetase; lysyl-tRNA synthetase 4390671 5742960 Cphy_3556 Clostridium phytofermentans ISDg lysyl-tRNA synthetase YP_001560644.1 4389160 R 357809 CDS YP_001560645.1 160881677 5742961 complement(4390777..4391259) 1 NC_010001.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 4391259 greA 5742961 greA Clostridium phytofermentans ISDg transcription elongation factor GreA YP_001560645.1 4390777 R 357809 CDS YP_001560646.1 160881678 5742962 4391888..4395415 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cno:NT01CX_1854 pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 4395415 5742962 Cphy_3558 Clostridium phytofermentans ISDg pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_001560646.1 4391888 D 357809 CDS YP_001560647.1 160881679 5742963 complement(4395667..4396056) 1 NC_010001.1 hypothetical protein 4396056 5742963 Cphy_3559 Clostridium phytofermentans ISDg hypothetical protein YP_001560647.1 4395667 R 357809 CDS YP_001560648.1 160881680 5742964 complement(4396078..4396374) 1 NC_010001.1 hypothetical protein 4396374 5742964 Cphy_3560 Clostridium phytofermentans ISDg hypothetical protein YP_001560648.1 4396078 R 357809 CDS YP_001560649.1 160881681 5742965 complement(4396367..4397203) 1 NC_010001.1 KEGG: bha:BH3360 hypothetical protein; hypothetical protein 4397203 5742965 Cphy_3561 Clostridium phytofermentans ISDg hypothetical protein YP_001560649.1 4396367 R 357809 CDS YP_001560650.1 160881682 5742966 complement(4397204..4397533) 1 NC_010001.1 PFAM: transcriptional regulator PadR family protein; KEGG: amt:Amet_1565 transcriptional regulator, PadR-like family; PadR-like family transcriptional regulator 4397533 5742966 Cphy_3562 Clostridium phytofermentans ISDg PadR-like family transcriptional regulator YP_001560650.1 4397204 R 357809 CDS YP_001560651.1 160881683 5742967 complement(4397796..4399868) 1 NC_010001.1 KEGG: bth:BT_0449 conserved hypothetical protein, S-layer related protein precursor; hypothetical protein 4399868 5742967 Cphy_3563 Clostridium phytofermentans ISDg hypothetical protein YP_001560651.1 4397796 R 357809 CDS YP_001560652.1 160881684 5742968 complement(4399965..4400819) 1 NC_010001.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: tte:TTE2419 transcriptional regulator; RpiR family transcriptional regulator 4400819 5742968 Cphy_3564 Clostridium phytofermentans ISDg RpiR family transcriptional regulator YP_001560652.1 4399965 R 357809 CDS YP_001560653.1 160881685 5742969 complement(4400832..4401524) 1 NC_010001.1 PFAM: N-acetylmannosamine-6-phosphate epimerase; KEGG: fnu:FN1476 N-acetylmannosamine-6-phosphate 2-epimerase; N-acylglucosamine-6-phosphate 2-epimerase 4401524 5742969 Cphy_3565 Clostridium phytofermentans ISDg N-acylglucosamine-6-phosphate 2-epimerase YP_001560653.1 4400832 R 357809 CDS YP_001560654.1 160881686 5742970 complement(4401543..4403048) 1 NC_010001.1 KEGG: tte:TTE2409 hypothetical protein; hypothetical protein 4403048 5742970 Cphy_3566 Clostridium phytofermentans ISDg hypothetical protein YP_001560654.1 4401543 R 357809 CDS YP_001560655.1 160881687 5742971 complement(4403423..4404967) 1 NC_010001.1 KEGG: sco:SCO0628 secreted protein; secreted protein 4404967 5742971 Cphy_3567 Clostridium phytofermentans ISDg secreted protein YP_001560655.1 4403423 R 357809 CDS YP_001560656.1 160881688 5742972 complement(4405037..4406263) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0557 sugar ABC transporter permease; binding-protein-dependent transport systems inner membrane component 4406263 5742972 Cphy_3568 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001560656.1 4405037 R 357809 CDS YP_001560657.1 160881689 5742973 complement(4406276..4407250) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gtn:GTNG_1772 hypothetical protein; binding-protein-dependent transport system inner membrane protein 4407250 5742973 Cphy_3569 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001560657.1 4406276 R 357809 CDS YP_001560658.1 160881690 5742974 complement(4407401..4409101) 1 NC_010001.1 KEGG: bcl:ABC1144 sugar ABC transporter substrate-binding protein; hypothetical protein 4409101 5742974 Cphy_3570 Clostridium phytofermentans ISDg hypothetical protein YP_001560658.1 4407401 R 357809 CDS YP_001560659.1 160881691 5742975 complement(4409134..4411029) 1 NC_010001.1 PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: spd:SPD_1969 glycosyl hydrolase-related protein; glycoside hydrolase family protein 4411029 5742975 Cphy_3571 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001560659.1 4409134 R 357809 CDS YP_001560660.1 160881692 5742976 complement(4411064..4412170) 1 NC_010001.1 KEGG: bth:BT_3593 hypothetical protein; hypothetical protein 4412170 5742976 Cphy_3572 Clostridium phytofermentans ISDg hypothetical protein YP_001560660.1 4411064 R 357809 CDS YP_001560661.1 160881693 5742977 4412453..4413352 1 NC_010001.1 PFAM: ROK family protein; KEGG: fnu:FN1474 N-acetylmannosamine kinase; ROK family protein 4413352 5742977 Cphy_3573 Clostridium phytofermentans ISDg ROK family protein YP_001560661.1 4412453 D 357809 CDS YP_001560662.1 160881694 5742978 complement(4413453..4414838) 1 NC_010001.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mba:Mbar_A3165 Fe-S oxidoreductase; radical SAM domain-containing protein 4414838 5742978 Cphy_3574 Clostridium phytofermentans ISDg radical SAM domain-containing protein YP_001560662.1 4413453 R 357809 CDS YP_001560663.1 160881695 5742979 complement(4414831..4415163) 1 NC_010001.1 hypothetical protein 4415163 5742979 Cphy_3575 Clostridium phytofermentans ISDg hypothetical protein YP_001560663.1 4414831 R 357809 CDS YP_001560664.1 160881696 5742980 complement(4415324..4416421) 1 NC_010001.1 KEGG: lin:lin2245 similar to ABC transporter (membrane protein); hypothetical protein 4416421 5742980 Cphy_3576 Clostridium phytofermentans ISDg hypothetical protein YP_001560664.1 4415324 R 357809 CDS YP_001560665.1 160881697 5742981 complement(4416402..4417319) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lmf:LMOf2365_2171 ABC transporter, ATP-binding protein; ABC transporter 4417319 5742981 Cphy_3577 Clostridium phytofermentans ISDg ABC transporter YP_001560665.1 4416402 R 357809 CDS YP_001560666.1 160881698 5742982 complement(4417348..4418718) 1 NC_010001.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: bay:RBAM_037310 hypothetical protein; UBA/THIF-type NAD/FAD binding protein 4418718 5742982 Cphy_3578 Clostridium phytofermentans ISDg UBA/THIF-type NAD/FAD binding protein YP_001560666.1 4417348 R 357809 CDS YP_001560667.1 160881699 5742983 complement(4418725..4419777) 1 NC_010001.1 KEGG: abu:Abu_1032 peptidase, M50 family; hypothetical protein 4419777 5742983 Cphy_3579 Clostridium phytofermentans ISDg hypothetical protein YP_001560667.1 4418725 R 357809 CDS YP_001560668.1 160881700 5742984 4420612..4422468 1 NC_010001.1 PFAM: protein of unknown function DUF181; KEGG: abu:Abu_1484 conserved hypothetical protein; hypothetical protein 4422468 5742984 Cphy_3580 Clostridium phytofermentans ISDg hypothetical protein YP_001560668.1 4420612 D 357809 CDS YP_001560669.1 160881701 5742985 complement(4422750..4423883) 1 NC_010001.1 KEGG: smr:Smar_1521 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 4423883 5742985 Cphy_3581 Clostridium phytofermentans ISDg N-acetylglucosamine-6-phosphate deacetylase YP_001560669.1 4422750 R 357809 CDS YP_001560670.1 160881702 5742986 complement(4423898..4424608) 1 NC_010001.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: cdf:CD1011 glucosamine-6-phosphate deaminase; glucosamine-6-phosphate isomerase 4424608 5742986 Cphy_3582 Clostridium phytofermentans ISDg glucosamine-6-phosphate isomerase YP_001560670.1 4423898 R 357809 CDS YP_001560671.1 160881703 5742988 complement(4425122..4426300) 1 NC_010001.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ctc:CTC02458 cobalt-zinc-cadmium resistance protein CzcD; cation diffusion facilitator family transporter 4426300 5742988 Cphy_3583 Clostridium phytofermentans ISDg cation diffusion facilitator family transporter YP_001560671.1 4425122 R 357809 CDS YP_001560672.1 160881704 5742989 complement(4426445..4427083) 1 NC_010001.1 PFAM: NADPH-dependent FMN reductase; KEGG: mbn:Mboo_0948 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 4427083 5742989 Cphy_3584 Clostridium phytofermentans ISDg NADPH-dependent FMN reductase YP_001560672.1 4426445 R 357809 CDS YP_001560673.1 160881705 5742990 complement(4427384..4428406) 1 NC_010001.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: oih:OB2557 transcriptional regulator; LacI family transcriptional regulator 4428406 5742990 Cphy_3585 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001560673.1 4427384 R 357809 CDS YP_001560674.1 160881706 5742611 complement(4428652..4430196) 1 NC_010001.1 PFAM: Ricin B lectin; glycosyl hydrolase 53 domain protein; KEGG: eca:ECA0852 exported plant proteoglycan hydrolase; arabinogalactan endo-1,4-beta-galactosidase 4430196 5742611 Cphy_3586 Clostridium phytofermentans ISDg arabinogalactan endo-1,4-beta-galactosidase YP_001560674.1 4428652 R 357809 CDS YP_001560675.1 160881707 5742612 complement(4430612..4432444) 1 NC_010001.1 hypothetical protein 4432444 5742612 Cphy_3587 Clostridium phytofermentans ISDg hypothetical protein YP_001560675.1 4430612 R 357809 CDS YP_001560676.1 160881708 5742613 complement(4432750..4433562) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2724 lactose transport system permease; binding-protein-dependent transport systems inner membrane component 4433562 5742613 Cphy_3588 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001560676.1 4432750 R 357809 CDS YP_001560677.1 160881709 5742614 complement(4433555..4434439) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2725 lactose transport system permease; binding-protein-dependent transport systems inner membrane component 4434439 5742614 Cphy_3589 Clostridium phytofermentans ISDg binding-protein-dependent transport systems inner membrane component YP_001560677.1 4433555 R 357809 CDS YP_001560678.1 160881710 5742615 complement(4434607..4435923) 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA0848 sugar ABC transporter, periplasmic binding protein; extracellular solute-binding protein 4435923 5742615 Cphy_3590 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001560678.1 4434607 R 357809 CDS YP_001560679.1 160881711 5742616 complement(4436346..4438502) 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: tte:TTE0448 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4438502 5742616 Cphy_3591 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001560679.1 4436346 R 357809 CDS YP_001560680.1 160881712 5742617 4438735..4439025 1 NC_010001.1 hypothetical protein 4439025 5742617 Cphy_3592 Clostridium phytofermentans ISDg hypothetical protein YP_001560680.1 4438735 D 357809 CDS YP_001560681.1 160881713 5742618 complement(4439138..4440307) 1 NC_010001.1 KEGG: mgr:MGG_11654 predicted protein; hypothetical protein 4440307 5742618 Cphy_3593 Clostridium phytofermentans ISDg hypothetical protein YP_001560681.1 4439138 R 357809 CDS YP_001560682.1 160881714 5742619 complement(4440309..4440818) 1 NC_010001.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ckl:CKL_1000 RpoE; ECF subfamily RNA polymerase sigma-24 factor 4440818 5742619 Cphy_3594 Clostridium phytofermentans ISDg ECF subfamily RNA polymerase sigma-24 factor YP_001560682.1 4440309 R 357809 CDS YP_001560683.1 160881715 5742620 complement(4441038..4441982) 1 NC_010001.1 KEGG: cpf:CPF_1765 hypothetical protein; hypothetical protein 4441982 5742620 Cphy_3595 Clostridium phytofermentans ISDg hypothetical protein YP_001560683.1 4441038 R 357809 CDS YP_001560684.1 160881716 5742621 complement(4442233..4443822) 1 NC_010001.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; KEGG: cpr:CPR_0581 peptide chain release factor 3; peptide chain release factor 3 4443822 5742621 Cphy_3596 Clostridium phytofermentans ISDg peptide chain release factor 3 YP_001560684.1 4442233 R 357809 CDS YP_001560685.1 160881717 5742622 complement(4444093..4444788) 1 NC_010001.1 PFAM: ABC-2 type transporter; KEGG: lpl:lp_1334 ABC transporter, permease; ABC-2 type transporter 4444788 5742622 Cphy_3597 Clostridium phytofermentans ISDg ABC-2 type transporter YP_001560685.1 4444093 R 357809 CDS YP_001560686.1 160881718 5742623 complement(4444788..4445633) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB0247 ABC transporter ATP-binding protein; ABC transporter 4445633 5742623 Cphy_3598 Clostridium phytofermentans ISDg ABC transporter YP_001560686.1 4444788 R 357809 CDS YP_001560687.1 160881719 5742624 complement(4445778..4446899) 1 NC_010001.1 PFAM: LytTr DNA-binding region; KEGG: bcy:Bcer98_3804 LytTr DNA-binding region; response regulator receiver protein 4446899 5742624 Cphy_3599 Clostridium phytofermentans ISDg response regulator receiver protein YP_001560687.1 4445778 R 357809 CDS YP_001560688.1 160881720 5742625 complement(4447277..4448491) 1 NC_010001.1 KEGG: csc:Csac_0991 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase 4448491 5742625 Cphy_3600 Clostridium phytofermentans ISDg aspartate kinase YP_001560688.1 4447277 R 357809 CDS YP_001560689.1 160881721 5742627 complement(4450172..4451374) 1 NC_010001.1 PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: csc:Csac_0993 homoserine dehydrogenase; homoserine dehydrogenase 4451374 5742627 Cphy_3603 Clostridium phytofermentans ISDg homoserine dehydrogenase YP_001560689.1 4450172 R 357809 CDS YP_001560690.1 160881722 5742628 complement(4451492..4451932) 1 NC_010001.1 PFAM: amino acid-binding ACT domain protein; KEGG: amt:Amet_0565 amino acid-binding ACT; hypothetical protein 4451932 5742628 Cphy_3604 Clostridium phytofermentans ISDg hypothetical protein YP_001560690.1 4451492 R 357809 CDS YP_001560691.1 160881723 5742629 4452296..4452652 1 NC_010001.1 PFAM: protein of unknown function DUF1232; KEGG: cbe:Cbei_2722 protein of unknown function DUF1232; hypothetical protein 4452652 5742629 Cphy_3605 Clostridium phytofermentans ISDg hypothetical protein YP_001560691.1 4452296 D 357809 CDS YP_001560692.1 160881724 5742630 complement(4452740..4453996) 1 NC_010001.1 KEGG: cth:Cthe_1857 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 4453996 5742630 Cphy_3606 Clostridium phytofermentans ISDg carboxyl-terminal protease YP_001560692.1 4452740 R 357809 CDS YP_001560693.1 160881725 5742631 complement(4454244..4455653) 1 NC_010001.1 PFAM: peptidase M23B; KEGG: tte:TTE1975 membrane proteins related to metalloendopeptidase; peptidase M23B 4455653 5742631 Cphy_3607 Clostridium phytofermentans ISDg peptidase M23B YP_001560693.1 4454244 R 357809 CDS YP_001560694.1 160881726 5742632 complement(4455802..4456713) 1 NC_010001.1 PFAM: protein of unknown function DUF214; KEGG: ctc:CTC02509 cell division protein ftsX; hypothetical protein 4456713 5742632 Cphy_3608 Clostridium phytofermentans ISDg hypothetical protein YP_001560694.1 4455802 R 357809 CDS YP_001560695.1 160881727 5742633 complement(4456700..4457440) 1 NC_010001.1 KEGG: cth:Cthe_1860 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 4457440 5742633 Cphy_3609 Clostridium phytofermentans ISDg cell division ATP-binding protein FtsE YP_001560695.1 4456700 R 357809 CDS YP_001560696.1 160881728 5742634 complement(4457545..4458633) 1 NC_010001.1 KEGG: cth:Cthe_1861 transcriptional regulator, CdaR; transcriptional regulator CdaR 4458633 5742634 Cphy_3610 Clostridium phytofermentans ISDg transcriptional regulator CdaR YP_001560696.1 4457545 R 357809 CDS YP_001560697.1 160881729 5742635 complement(4459163..4460275) 1 NC_010001.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein; ABC transporter 4460275 5742635 Cphy_3611 Clostridium phytofermentans ISDg ABC transporter YP_001560697.1 4459163 R 357809 CDS YP_001560698.1 160881730 5742636 complement(4460518..4461390) 1 NC_010001.1 PFAM: protein of unknown function DUF161; KEGG: cth:Cthe_2703 protein of unknown function DUF161; hypothetical protein 4461390 5742636 Cphy_3612 Clostridium phytofermentans ISDg hypothetical protein YP_001560698.1 4460518 R 357809 CDS YP_001560699.1 160881731 5742637 complement(4461416..4461847) 1 NC_010001.1 KEGG: pth:PTH_2777 hypothetical membrane protein; hypothetical protein 4461847 5742637 Cphy_3613 Clostridium phytofermentans ISDg hypothetical protein YP_001560699.1 4461416 R 357809 CDS YP_001560700.1 160881732 5742638 4462240..4462968 1 NC_010001.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ckl:CKL_0780 predicted short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 4462968 5742638 Cphy_3614 Clostridium phytofermentans ISDg short-chain dehydrogenase/reductase SDR YP_001560700.1 4462240 D 357809 CDS YP_001560701.1 160881733 5742639 complement(4463242..4464726) 1 NC_010001.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tde:TDE0450 hypothetical protein; hypothetical protein 4464726 5742639 Cphy_3615 Clostridium phytofermentans ISDg hypothetical protein YP_001560701.1 4463242 R 357809 CDS YP_001560702.1 160881734 5742640 complement(4464868..4466925) 1 NC_010001.1 PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY1968 hypothetical protein; hypothetical protein 4466925 5742640 Cphy_3616 Clostridium phytofermentans ISDg hypothetical protein YP_001560702.1 4464868 R 357809 CDS YP_001560703.1 160881735 5742641 complement(4467462..4468265) 1 NC_010001.1 KEGG: btl:BALH_2620 aminoglycoside N3'-acetyltransferase; aminoglycoside N3'-acetyltransferase-like protein 4468265 5742641 Cphy_3617 Clostridium phytofermentans ISDg aminoglycoside N3'-acetyltransferase-like protein YP_001560703.1 4467462 R 357809 CDS YP_001560704.1 160881736 5742642 complement(4468402..4469928) 1 NC_010001.1 PFAM: glycoside hydrolase family 43; KEGG: bad:BAD_0301 pyridine nucleotide-disulphide oxidoreductase; glycoside hydrolase family protein 4469928 5742642 Cphy_3618 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001560704.1 4468402 R 357809 CDS YP_001560705.1 160881737 5742643 4470123..4470851 1 NC_010001.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: llc:LACR_1474 3-oxoacyl-acyl carrier protein reductase; short-chain dehydrogenase/reductase SDR 4470851 5742643 Cphy_3619 Clostridium phytofermentans ISDg short-chain dehydrogenase/reductase SDR YP_001560705.1 4470123 D 357809 CDS YP_001560706.1 160881738 5742644 complement(4471131..4472369) 1 NC_010001.1 PFAM: sodium/hydrogen exchanger; KEGG: cbh:CLC_1237 transporter, monovalent cation:proton antiporter-2 (CPA2) family; sodium/hydrogen exchanger 4472369 5742644 Cphy_3620 Clostridium phytofermentans ISDg sodium/hydrogen exchanger YP_001560706.1 4471131 R 357809 CDS YP_001560707.1 160881739 5742645 complement(4472366..4472977) 1 NC_010001.1 PFAM: regulatory protein TetR; KEGG: cbh:CLC_1236 transcriptional regulator, TetR family; TetR family transcriptional regulator 4472977 5742645 Cphy_3621 Clostridium phytofermentans ISDg TetR family transcriptional regulator YP_001560707.1 4472366 R 357809 CDS YP_001560708.1 160881740 5742646 complement(4473568..4474779) 1 NC_010001.1 PFAM: Amidohydrolase 3; KEGG: btk:BT9727_4230 N-acyl-D-amino-acid deacylase family protein; amidohydrolase 4474779 5742646 Cphy_3622 Clostridium phytofermentans ISDg amidohydrolase YP_001560708.1 4473568 R 357809 CDS YP_001560709.1 160881741 5742647 4474929..4475753 1 NC_010001.1 PFAM: regulatory protein MerR; KEGG: cbo:CBO0895 transcriptional regulator; MerR family transcriptional regulator 4475753 5742647 Cphy_3623 Clostridium phytofermentans ISDg MerR family transcriptional regulator YP_001560709.1 4474929 D 357809 CDS YP_001560710.1 160881742 5742648 complement(4475855..4476343) 1 NC_010001.1 hypothetical protein 4476343 5742648 Cphy_3624 Clostridium phytofermentans ISDg hypothetical protein YP_001560710.1 4475855 R 357809 CDS YP_001560711.1 160881743 5742649 complement(4476487..4477338) 1 NC_010001.1 KEGG: blo:BL0186 possible esterase; esterase 4477338 5742649 Cphy_3625 Clostridium phytofermentans ISDg esterase YP_001560711.1 4476487 R 357809 CDS YP_001560712.1 160881744 5742650 complement(4477567..4478070) 1 NC_010001.1 KEGG: mlo:mll3789 weak similarity to chloramphenicol phosphotransferase; chloramphenicol 3-O-phosphotransferase-like protein 4478070 5742650 Cphy_3626 Clostridium phytofermentans ISDg chloramphenicol 3-O-phosphotransferase-like protein YP_001560712.1 4477567 R 357809 CDS YP_001560713.1 160881745 5742651 complement(4478341..4478733) 1 NC_010001.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 4478733 rpsI 5742651 rpsI Clostridium phytofermentans ISDg 30S ribosomal protein S9 YP_001560713.1 4478341 R 357809 CDS YP_001560714.1 160881746 5742652 complement(4478759..4479193) 1 NC_010001.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 4479193 rplM 5742652 rplM Clostridium phytofermentans ISDg 50S ribosomal protein L13 YP_001560714.1 4478759 R 357809 CDS YP_001560715.1 160881747 5742653 4479660..4481000 1 NC_010001.1 KEGG: cbe:Cbei_3786 integral membrane sensor signal transduction histidine kinase; Signal transduction histidine kinase-like protein 4481000 5742653 Cphy_3629 Clostridium phytofermentans ISDg Signal transduction histidine kinase-like protein YP_001560715.1 4479660 D 357809 CDS YP_001560716.1 160881748 5742654 4481009..4481707 1 NC_010001.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: cbe:Cbei_3785 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 4481707 5742654 Cphy_3630 Clostridium phytofermentans ISDg two component LuxR family transcriptional regulator YP_001560716.1 4481009 D 357809 CDS YP_001560717.1 160881749 5742655 4481986..4483098 1 NC_010001.1 hypothetical protein 4483098 5742655 Cphy_3631 Clostridium phytofermentans ISDg hypothetical protein YP_001560717.1 4481986 D 357809 CDS YP_001560718.1 160881750 5742656 4483225..4483908 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_4728 ABC transporter related; ABC transporter 4483908 5742656 Cphy_3632 Clostridium phytofermentans ISDg ABC transporter YP_001560718.1 4483225 D 357809 CDS YP_001560719.1 160881751 5742657 4483905..4485047 1 NC_010001.1 PFAM: protein of unknown function DUF214; KEGG: vfi:VFA0736 ABC transporter permease; hypothetical protein 4485047 5742657 Cphy_3633 Clostridium phytofermentans ISDg hypothetical protein YP_001560719.1 4483905 D 357809 CDS YP_001560720.1 160881752 5742658 complement(4485291..4486028) 1 NC_010001.1 KEGG: cth:Cthe_2939 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 4486028 5742658 Cphy_3634 Clostridium phytofermentans ISDg tRNA pseudouridine synthase A YP_001560720.1 4485291 R 357809 CDS YP_001560721.1 160881753 5742659 complement(4486170..4486982) 1 NC_010001.1 PFAM: cobalt transport protein; KEGG: cdf:CD0102 ABC transporter, permease; cobalt transport protein 4486982 5742659 Cphy_3635 Clostridium phytofermentans ISDg cobalt transport protein YP_001560721.1 4486170 R 357809 CDS YP_001560722.1 160881754 5742660 complement(4487111..4487971) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4446 ABC transporter related; ABC transporter 4487971 5742660 Cphy_3636 Clostridium phytofermentans ISDg ABC transporter YP_001560722.1 4487111 R 357809 CDS YP_001560723.1 160881755 5742661 complement(4487952..4488863) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_2683 cobalt ABC transporter, ATP-binding protein; ABC transporter 4488863 5742661 Cphy_3637 Clostridium phytofermentans ISDg ABC transporter YP_001560723.1 4487952 R 357809 CDS YP_001560724.1 160881756 5742662 complement(4489162..4489698) 1 NC_010001.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 4489698 rplQ 5742662 rplQ Clostridium phytofermentans ISDg 50S ribosomal protein L17 YP_001560724.1 4489162 R 357809 CDS YP_001560725.1 160881757 5742663 complement(4489723..4490682) 1 NC_010001.1 KEGG: cth:Cthe_2932 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase alpha subunit domain protein; RNA polymerase dimerisation; RNA polymerase insert; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha 4490682 5742663 Cphy_3639 Clostridium phytofermentans ISDg DNA-directed RNA polymerase subunit alpha YP_001560725.1 4489723 R 357809 CDS YP_001560726.1 160881758 5742664 complement(4490755..4491351) 1 NC_010001.1 PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: drm:Dred_0242 RNA-binding S4 domain protein; 30S ribosomal protein S4 4491351 5742664 Cphy_3640 Clostridium phytofermentans ISDg 30S ribosomal protein S4 YP_001560726.1 4490755 R 357809 CDS YP_001560727.1 160881759 5742665 complement(4491368..4491766) 1 NC_010001.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 4491766 5742665 Cphy_3641 Clostridium phytofermentans ISDg 30S ribosomal protein S11 YP_001560727.1 4491368 R 357809 CDS YP_001560728.1 160881760 5742666 complement(4491829..4492197) 1 NC_010001.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 4492197 rpsM 5742666 rpsM Clostridium phytofermentans ISDg 30S ribosomal protein S13 YP_001560728.1 4491829 R 357809 CDS YP_001560729.1 160881761 5742667 complement(4492788..4492901) 1 NC_010001.1 PFAM: ribosomal protein L36; KEGG: csc:Csac_2263 ribosomal protein L36; 50S ribosomal protein L36 4492901 5742667 Cphy_3643 Clostridium phytofermentans ISDg 50S ribosomal protein L36 YP_001560729.1 4492788 R 357809 CDS YP_001560730.1 160881762 5742668 complement(4493093..4493311) 1 NC_010001.1 TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1 IF1 family protein; KEGG: cth:Cthe_2927 translation initiation factor IF-1; translation initiation factor IF-1 4493311 5742668 Cphy_3644 Clostridium phytofermentans ISDg translation initiation factor IF-1 YP_001560730.1 4493093 R 357809 CDS YP_001560731.1 160881763 5742669 complement(4493407..4494162) 1 NC_010001.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: tte:TTE2270 methionine aminopeptidase; methionine aminopeptidase 4494162 5742669 Cphy_3645 Clostridium phytofermentans ISDg methionine aminopeptidase YP_001560731.1 4493407 R 357809 CDS YP_001560732.1 160881764 5742670 complement(4494268..4494921) 1 NC_010001.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 4494921 adk 5742670 adk Clostridium phytofermentans ISDg adenylate kinase YP_001560732.1 4494268 R 357809 CDS YP_001560733.1 160881765 5742671 complement(4495093..4496421) 1 NC_010001.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: amt:Amet_4458 preprotein translocase, SecY subunit; preprotein translocase subunit SecY 4496421 5742671 Cphy_3647 Clostridium phytofermentans ISDg preprotein translocase subunit SecY YP_001560733.1 4495093 R 357809 CDS YP_001560734.1 160881766 5742672 complement(4496423..4496863) 1 NC_010001.1 late assembly protein; 50S ribosomal protein L15 4496863 rplO 5742672 rplO Clostridium phytofermentans ISDg 50S ribosomal protein L15 YP_001560734.1 4496423 R 357809 CDS YP_001560735.1 160881767 5742673 complement(4496890..4497072) 1 NC_010001.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 4497072 rpmD 5742673 rpmD Clostridium phytofermentans ISDg 50S ribosomal protein L30 YP_001560735.1 4496890 R 357809 CDS YP_001560736.1 160881768 5742674 complement(4497092..4497598) 1 NC_010001.1 TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG: cth:Cthe_2920 ribosomal protein S5-like protein; 30S ribosomal protein S5 4497598 5742674 Cphy_3650 Clostridium phytofermentans ISDg 30S ribosomal protein S5 YP_001560736.1 4497092 R 357809 CDS YP_001560737.1 160881769 5742675 complement(4497615..4497983) 1 NC_010001.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 4497983 rplR 5742675 rplR Clostridium phytofermentans ISDg 50S ribosomal protein L18 YP_001560737.1 4497615 R 357809 CDS YP_001560738.1 160881770 5742676 complement(4498001..4498543) 1 NC_010001.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 4498543 rplF 5742676 rplF Clostridium phytofermentans ISDg 50S ribosomal protein L6 YP_001560738.1 4498001 R 357809 CDS YP_001560739.1 160881771 5742677 complement(4498797..4499198) 1 NC_010001.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 4499198 rpsH 5742677 rpsH Clostridium phytofermentans ISDg 30S ribosomal protein S8 YP_001560739.1 4498797 R 357809 CDS YP_001560740.1 160881772 5742678 complement(4499222..4499392) 1 NC_010001.1 PFAM: ribosomal protein S14; KEGG: amt:Amet_4465 ribosomal protein S14; 30S ribosomal protein S14 4499392 5742678 Cphy_3654 Clostridium phytofermentans ISDg 30S ribosomal protein S14 YP_001560740.1 4499222 R 357809 CDS YP_001560741.1 160881773 5742679 complement(4499424..4499963) 1 NC_010001.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 4499963 rplE 5742679 rplE Clostridium phytofermentans ISDg 50S ribosomal protein L5 YP_001560741.1 4499424 R 357809 CDS YP_001560742.1 160881774 5742680 complement(4499988..4500305) 1 NC_010001.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 4500305 rplX 5742680 rplX Clostridium phytofermentans ISDg 50S ribosomal protein L24 YP_001560742.1 4499988 R 357809 CDS YP_001560743.1 160881775 5742681 complement(4500320..4500688) 1 NC_010001.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 4500688 rplN 5742681 rplN Clostridium phytofermentans ISDg 50S ribosomal protein L14 YP_001560743.1 4500320 R 357809 CDS YP_001560744.1 160881776 5742682 complement(4500749..4501006) 1 NC_010001.1 PFAM: ribosomal protein S17; KEGG: cth:Cthe_2912 ribosomal protein S17; 30S ribosomal protein S17 4501006 5742682 Cphy_3658 Clostridium phytofermentans ISDg 30S ribosomal protein S17 YP_001560744.1 4500749 R 357809 CDS YP_001560745.1 160881777 5742683 complement(4501071..4501280) 1 NC_010001.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 4501280 5742683 Cphy_3659 Clostridium phytofermentans ISDg 50S ribosomal protein L29 YP_001560745.1 4501071 R 357809 CDS YP_001560746.1 160881778 5742684 complement(4501270..4501707) 1 NC_010001.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 4501707 rplP 5742684 rplP Clostridium phytofermentans ISDg 50S ribosomal protein L16 YP_001560746.1 4501270 R 357809 CDS YP_001560747.1 160881779 5742685 complement(4501707..4502366) 1 NC_010001.1 KEGG: gka:GK0112 30S ribosomal protein S3 (BS2); TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; 30S ribosomal protein S3 4502366 5742685 Cphy_3661 Clostridium phytofermentans ISDg 30S ribosomal protein S3 YP_001560747.1 4501707 R 357809 CDS YP_001560748.1 160881780 5742686 complement(4502378..4502764) 1 NC_010001.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 4502764 rplV 5742686 rplV Clostridium phytofermentans ISDg 50S ribosomal protein L22 YP_001560748.1 4502378 R 357809 CDS YP_001560749.1 160881781 5742687 complement(4502998..4503276) 1 NC_010001.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 4503276 rpsS 5742687 rpsS Clostridium phytofermentans ISDg 30S ribosomal protein S19 YP_001560749.1 4502998 R 357809 CDS YP_001560750.1 160881782 5742688 complement(4503295..4504140) 1 NC_010001.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 4504140 rplB 5742688 rplB Clostridium phytofermentans ISDg 50S ribosomal protein L2 YP_001560750.1 4503295 R 357809 CDS YP_001560751.1 160881783 5742689 complement(4504321..4504620) 1 NC_010001.1 PFAM: Ribosomal protein L25/L23; KEGG: cdf:CD0075 50S ribosomal protein L23; ribosomal protein L25/L23 4504620 5742689 Cphy_3665 Clostridium phytofermentans ISDg ribosomal protein L25/L23 YP_001560751.1 4504321 R 357809 CDS YP_001560752.1 160881784 5742690 complement(4504620..4505240) 1 NC_010001.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 4505240 rplD 5742690 rplD Clostridium phytofermentans ISDg 50S ribosomal protein L4 YP_001560752.1 4504620 R 357809 CDS YP_001560753.1 160881785 5742691 complement(4505269..4505904) 1 NC_010001.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 4505904 rplC 5742691 rplC Clostridium phytofermentans ISDg 50S ribosomal protein L3 YP_001560753.1 4505269 R 357809 CDS YP_001560754.1 160881786 5742692 complement(4506096..4506413) 1 NC_010001.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 4506413 rpsJ 5742692 rpsJ Clostridium phytofermentans ISDg 30S ribosomal protein S10 YP_001560754.1 4506096 R 357809 CDS YP_001560755.1 160881787 5742693 complement(4507271..4509559) 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: csc:Csac_2452 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4509559 5742693 Cphy_3669 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001560755.1 4507271 R 357809 CDS YP_001560756.1 160881788 5742694 complement(4510144..4510467) 1 NC_010001.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: msu:MS0567 hypothetical protein; cupin 4510467 5742694 Cphy_3670 Clostridium phytofermentans ISDg cupin YP_001560756.1 4510144 R 357809 CDS YP_001560757.1 160881789 5742695 complement(4510691..4511566) 1 NC_010001.1 KEGG: cdf:CD3581 hypothetical protein; hypothetical protein 4511566 5742695 Cphy_3671 Clostridium phytofermentans ISDg hypothetical protein YP_001560757.1 4510691 R 357809 CDS YP_001560758.1 160881790 5742696 4512049..4512726 1 NC_010001.1 PFAM: PspA/IM30 family protein; KEGG: dsy:DSY1913 hypothetical protein; phage shock protein A, PspA 4512726 5742696 Cphy_3672 Clostridium phytofermentans ISDg phage shock protein A, PspA YP_001560758.1 4512049 D 357809 CDS YP_001560759.1 160881791 5742697 4512786..4513982 1 NC_010001.1 KEGG: dsy:DSY1914 hypothetical protein; hypothetical protein 4513982 5742697 Cphy_3673 Clostridium phytofermentans ISDg hypothetical protein YP_001560759.1 4512786 D 357809 CDS YP_001560760.1 160881792 5742698 4513979..4514980 1 NC_010001.1 KEGG: dsy:DSY1915 hypothetical protein; hypothetical protein 4514980 5742698 Cphy_3674 Clostridium phytofermentans ISDg hypothetical protein YP_001560760.1 4513979 D 357809 CDS YP_001560761.1 160881793 5742699 4514999..4516003 1 NC_010001.1 KEGG: bay:RBAM_006610 YdjI; hypothetical protein 4516003 5742699 Cphy_3675 Clostridium phytofermentans ISDg hypothetical protein YP_001560761.1 4514999 D 357809 CDS YP_001560762.1 160881794 5742700 complement(4516190..4517305) 1 NC_010001.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pap:PSPA7_3441 hypothetical protein; diguanylate cyclase 4517305 5742700 Cphy_3676 Clostridium phytofermentans ISDg diguanylate cyclase YP_001560762.1 4516190 R 357809 CDS YP_001560763.1 160881795 5742701 complement(4517601..4518149) 1 NC_010001.1 PFAM: BioY protein; KEGG: cbe:Cbei_1913 BioY protein; BioY protein 4518149 5742701 Cphy_3677 Clostridium phytofermentans ISDg BioY protein YP_001560763.1 4517601 R 357809 CDS YP_001560764.1 160881796 5742702 complement(4518411..4518959) 1 NC_010001.1 KEGG: cac:CAC2331 DTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 4518959 5742702 Cphy_3678 Clostridium phytofermentans ISDg dTDP-4-dehydrorhamnose 3,5-epimerase YP_001560764.1 4518411 R 357809 CDS YP_001560765.1 160881797 5742703 complement(4519005..4519862) 1 NC_010001.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: drm:Dred_3036 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 4519862 5742703 Cphy_3679 Clostridium phytofermentans ISDg dTDP-4-dehydrorhamnose reductase YP_001560765.1 4519005 R 357809 CDS YP_001560766.1 160881798 5742704 complement(4519859..4520884) 1 NC_010001.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cbe:Cbei_4754 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 4520884 5742704 Cphy_3680 Clostridium phytofermentans ISDg dTDP-glucose 4,6-dehydratase YP_001560766.1 4519859 R 357809 CDS YP_001560767.1 160881799 5742705 complement(4520979..4521860) 1 NC_010001.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cbe:Cbei_4756 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 4521860 5742705 Cphy_3681 Clostridium phytofermentans ISDg glucose-1-phosphate thymidylyltransferase YP_001560767.1 4520979 R 357809 CDS YP_001560768.1 160881800 5742706 complement(4522254..4523354) 1 NC_010001.1 KEGG: amt:Amet_0211 hypothetical protein; hypothetical protein 4523354 5742706 Cphy_3682 Clostridium phytofermentans ISDg hypothetical protein YP_001560768.1 4522254 R 357809 CDS YP_001560769.1 160881801 5742707 complement(4524010..4524876) 1 NC_010001.1 KEGG: cbe:Cbei_1903 fructose-1,6-bisphosphate aldolase, class II; TIGRFAM: ketose-bisphosphate aldolase; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II; fructose-1,6-bisphosphate aldolase 4524876 5742707 Cphy_3683 Clostridium phytofermentans ISDg fructose-1,6-bisphosphate aldolase YP_001560769.1 4524010 R 357809 CDS YP_001560770.1 160881802 5742708 complement(4525018..4525221) 1 NC_010001.1 hypothetical protein 4525221 5742708 Cphy_3684 Clostridium phytofermentans ISDg hypothetical protein YP_001560770.1 4525018 R 357809 CDS YP_001560771.1 160881803 5742709 complement(4525470..4526369) 1 NC_010001.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: sth:STH2919 phosphatase; PA-phosphatase like phosphoesterase 4526369 5742709 Cphy_3685 Clostridium phytofermentans ISDg PA-phosphatase like phosphoesterase YP_001560771.1 4525470 R 357809 CDS YP_001560772.1 160881804 5742710 complement(4526626..4530393) 1 NC_010001.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4530393 5742710 Cphy_3686 Clostridium phytofermentans ISDg DNA-directed RNA polymerase subunit beta' YP_001560772.1 4526626 R 357809 CDS YP_001560773.1 160881805 5742711 complement(4530415..4534251) 1 NC_010001.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 3; KEGG: cth:Cthe_2724 DNA-directed RNA polymerase, beta subunit; DNA-directed RNA polymerase subunit beta 4534251 5742711 Cphy_3687 Clostridium phytofermentans ISDg DNA-directed RNA polymerase subunit beta YP_001560773.1 4530415 R 357809 CDS YP_001560774.1 160881806 5742712 complement(4535099..4537732) 1 NC_010001.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cth:Cthe_2666 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase 4537732 5742712 Cphy_3688 Clostridium phytofermentans ISDg P-type HAD superfamily ATPase YP_001560774.1 4535099 R 357809 CDS YP_001560775.1 160881807 5742713 complement(4537867..4539054) 1 NC_010001.1 PFAM: major facilitator superfamily MFS_1; KEGG: amt:Amet_3781 major facilitator superfamily MFS_1; major facilitator transporter 4539054 5742713 Cphy_3689 Clostridium phytofermentans ISDg major facilitator transporter YP_001560775.1 4537867 R 357809 CDS YP_001560776.1 160881808 5742714 complement(4539378..4539740) 1 NC_010001.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 4539740 rplL 5742714 rplL Clostridium phytofermentans ISDg 50S ribosomal protein L7/L12 YP_001560776.1 4539378 R 357809 CDS YP_001560777.1 160881809 5742715 complement(4539817..4540311) 1 NC_010001.1 PFAM: ribosomal protein L10; KEGG: cbe:Cbei_0142 ribosomal protein L10; 50S ribosomal protein L10 4540311 5742715 Cphy_3691 Clostridium phytofermentans ISDg 50S ribosomal protein L10 YP_001560777.1 4539817 R 357809 CDS YP_001560778.1 160881810 5742716 complement(4540603..4541295) 1 NC_010001.1 PFAM: ribosomal protein L1; KEGG: cth:Cthe_2721 ribosomal protein L1; 50S ribosomal protein L1 4541295 5742716 Cphy_3692 Clostridium phytofermentans ISDg 50S ribosomal protein L1 YP_001560778.1 4540603 R 357809 CDS YP_001560779.1 160881811 5742717 complement(4541354..4541782) 1 NC_010001.1 PFAM: ribosomal protein L11; KEGG: cdf:CD0061 50S ribosomal protein L11; 50S ribosomal protein L11 4541782 5742717 Cphy_3693 Clostridium phytofermentans ISDg 50S ribosomal protein L11 YP_001560779.1 4541354 R 357809 CDS YP_001560780.1 160881812 5742718 complement(4541913..4542431) 1 NC_010001.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KEGG: cth:Cthe_2719 NusG antitermination factor; NusG antitermination factor 4542431 5742718 Cphy_3694 Clostridium phytofermentans ISDg NusG antitermination factor YP_001560780.1 4541913 R 357809 CDS YP_001560781.1 160881813 5742719 complement(4542451..4542681) 1 NC_010001.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; Preprotein translocase subunit SecE 4542681 5742719 Cphy_3695 Clostridium phytofermentans ISDg Preprotein translocase subunit SecE YP_001560781.1 4542451 R 357809 CDS YP_001560782.1 160881814 5742720 complement(4542731..4542880) 1 NC_010001.1 PFAM: ribosomal protein L33; KEGG: amt:Amet_4493 ribosomal protein L33; 50S ribosomal protein L33 4542880 5742720 Cphy_3696 Clostridium phytofermentans ISDg 50S ribosomal protein L33 YP_001560782.1 4542731 R 357809 CDS YP_001560783.1 160881815 5742721 complement(4543294..4544847) 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: amt:Amet_2816 response regulator receiver protein; two component AraC family transcriptional regulator 4544847 5742721 Cphy_3697 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001560783.1 4543294 R 357809 CDS YP_001560784.1 160881816 5742722 4545162..4547408 1 NC_010001.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Ig domain protein group 2 domain protein; KEGG: cpv:cgd6_4840 serine protease, subtilase family, signal peptide; peptidase S8/S53 subtilisin kexin sedolisin 4547408 5742722 Cphy_3698 Clostridium phytofermentans ISDg peptidase S8/S53 subtilisin kexin sedolisin YP_001560784.1 4545162 D 357809 CDS YP_001560785.1 160881817 5742723 complement(4547679..4549472) 1 NC_010001.1 TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: cth:Cthe_2452 oligoendopeptidase F; oligoendopeptidase F 4549472 5742723 Cphy_3699 Clostridium phytofermentans ISDg oligoendopeptidase F YP_001560785.1 4547679 R 357809 CDS YP_001560786.1 160881818 5742724 complement(4549489..4550538) 1 NC_010001.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bha:BH1928 transcriptional regulator (LacI family); LacI family transcriptional regulator 4550538 5742724 Cphy_3700 Clostridium phytofermentans ISDg LacI family transcriptional regulator YP_001560786.1 4549489 R 357809 CDS YP_001560787.1 160881819 5742725 complement(4550621..4551127) 1 NC_010001.1 PFAM: Heptaprenyl diphosphate synthase component I; KEGG: cno:NT01CX_0720 hypothetical protein; heptaprenyl diphosphate synthase component I 4551127 5742725 Cphy_3701 Clostridium phytofermentans ISDg heptaprenyl diphosphate synthase component I YP_001560787.1 4550621 R 357809 CDS YP_001560788.1 160881820 5742726 complement(4551609..4552958) 1 NC_010001.1 PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_3172 protein of unknown function DUF214; hypothetical protein 4552958 5742726 Cphy_3702 Clostridium phytofermentans ISDg hypothetical protein YP_001560788.1 4551609 R 357809 CDS YP_001560789.1 160881821 5742727 complement(4552948..4553475) 1 NC_010001.1 KEGG: yli:YALI0B09867g hypothetical protein; hypothetical protein 4553475 5742727 Cphy_3703 Clostridium phytofermentans ISDg hypothetical protein YP_001560789.1 4552948 R 357809 CDS YP_001560790.1 160881822 5742728 complement(4553493..4555967) 1 NC_010001.1 KEGG: cth:Cthe_3171 S-layer domain-like protein; S-layer-like domain-containing protein 4555967 5742728 Cphy_3704 Clostridium phytofermentans ISDg S-layer-like domain-containing protein YP_001560790.1 4553493 R 357809 CDS YP_001560791.1 160881823 5742729 complement(4556091..4556972) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_0366 ABC transporter related; ABC transporter 4556972 5742729 Cphy_3705 Clostridium phytofermentans ISDg ABC transporter YP_001560791.1 4556091 R 357809 CDS YP_001560792.1 160881824 5742730 complement(4557402..4558016) 1 NC_010001.1 KEGG: pdi:BDI_1616 hypothetical protein; hypothetical protein 4558016 5742730 Cphy_3706 Clostridium phytofermentans ISDg hypothetical protein YP_001560792.1 4557402 R 357809 CDS YP_001560793.1 160881825 5742731 complement(4558120..4560750) 1 NC_010001.1 PFAM: transglutaminase domain protein; KEGG: cth:Cthe_1056 transglutaminase-like protein; transglutaminase domain-containing protein 4560750 5742731 Cphy_3707 Clostridium phytofermentans ISDg transglutaminase domain-containing protein YP_001560793.1 4558120 R 357809 CDS YP_001560794.1 160881826 5742732 complement(4560751..4561965) 1 NC_010001.1 PFAM: protein of unknown function DUF58; KEGG: cth:Cthe_1055 protein of unknown function DUF58; hypothetical protein 4561965 5742732 Cphy_3708 Clostridium phytofermentans ISDg hypothetical protein YP_001560794.1 4560751 R 357809 CDS YP_001560795.1 160881827 5742733 complement(4561978..4562928) 1 NC_010001.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: pho:PH0776 methanol dehydrogenase regulatory protein; ATPase 4562928 5742733 Cphy_3709 Clostridium phytofermentans ISDg ATPase YP_001560795.1 4561978 R 357809 CDS YP_001560796.1 160881828 5742734 complement(4563244..4564098) 1 NC_010001.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dsy:DSY1521 hypothetical protein; phosphomethylpyrimidine kinase type-1 4564098 5742734 Cphy_3710 Clostridium phytofermentans ISDg phosphomethylpyrimidine kinase type-1 YP_001560796.1 4563244 R 357809 CDS YP_001560797.1 160881829 5742735 complement(4564425..4565051) 1 NC_010001.1 hypothetical protein 4565051 5742735 Cphy_3711 Clostridium phytofermentans ISDg hypothetical protein YP_001560797.1 4564425 R 357809 CDS YP_001560798.1 160881830 5742736 complement(4565097..4565582) 1 NC_010001.1 hypothetical protein 4565582 5742736 Cphy_3712 Clostridium phytofermentans ISDg hypothetical protein YP_001560798.1 4565097 R 357809 CDS YP_001560799.1 160881831 5742737 complement(4565569..4565862) 1 NC_010001.1 PFAM: regulatory protein MerR; KEGG: dsy:DSY0175 hypothetical protein; MerR family transcriptional regulator 4565862 5742737 Cphy_3713 Clostridium phytofermentans ISDg MerR family transcriptional regulator YP_001560799.1 4565569 R 357809 CDS YP_001560800.1 160881832 5742912 complement(4566272..4567729) 1 NC_010001.1 KEGG: sun:SUN_2457 hypothetical protein; hypothetical protein 4567729 5742912 Cphy_3714 Clostridium phytofermentans ISDg hypothetical protein YP_001560800.1 4566272 R 357809 CDS YP_001560801.1 160881833 5742913 complement(4568100..4568540) 1 NC_010001.1 KEGG: ckl:CKL_2980 hypothetical protein; hypothetical protein 4568540 5742913 Cphy_3715 Clostridium phytofermentans ISDg hypothetical protein YP_001560801.1 4568100 R 357809 CDS YP_001560802.1 160881834 5742915 4569180..4570511 1 NC_010001.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: bcl:ABC1433 two-component response regulator; LuxR family transcriptional regulator 4570511 5742915 Cphy_3716 Clostridium phytofermentans ISDg LuxR family transcriptional regulator YP_001560802.1 4569180 D 357809 CDS YP_001560803.1 160881835 5742916 4570749..4571093 1 NC_010001.1 hypothetical protein 4571093 5742916 Cphy_3717 Clostridium phytofermentans ISDg hypothetical protein YP_001560803.1 4570749 D 357809 CDS YP_001560804.1 160881836 5742917 complement(4571377..4571826) 1 NC_010001.1 PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: tme:Tmel_1315 D-tyrosyl-tRNA(Tyr) deacylase; D-tyrosyl-tRNA(Tyr) deacylase 4571826 5742917 Cphy_3718 Clostridium phytofermentans ISDg D-tyrosyl-tRNA(Tyr) deacylase YP_001560804.1 4571377 R 357809 CDS YP_001560805.1 160881837 5742918 complement(4571963..4573135) 1 NC_010001.1 KEGG: tte:TTE0463 Phosphopentomutase; TIGRFAM: phosphopentomutase; PFAM: metalloenzyme domain protein; Phosphopentomutase domain protein; phosphopentomutase 4573135 5742918 Cphy_3719 Clostridium phytofermentans ISDg phosphopentomutase YP_001560805.1 4571963 R 357809 CDS YP_001560806.1 160881838 5742919 4573309..4573980 1 NC_010001.1 KEGG: ckl:CKL_2512 predicted phosphatase; phosphatase 4573980 5742919 Cphy_3720 Clostridium phytofermentans ISDg phosphatase YP_001560806.1 4573309 D 357809 CDS YP_001560807.1 160881839 5742920 complement(4574057..4575073) 1 NC_010001.1 PFAM: glycosyl transferase family 2; KEGG: cac:CAC1488 glycosyltransferase involved in cell wall biogenesis; glycosyl transferase family protein 4575073 5742920 Cphy_3721 Clostridium phytofermentans ISDg glycosyl transferase family protein YP_001560807.1 4574057 R 357809 CDS YP_001560808.1 160881840 5742921 complement(4575091..4577664) 1 NC_010001.1 hypothetical protein 4577664 5742921 Cphy_3722 Clostridium phytofermentans ISDg hypothetical protein YP_001560808.1 4575091 R 357809 CDS YP_001560809.1 160881841 5742922 complement(4577671..4578906) 1 NC_010001.1 KEGG: cpe:CPE1049 hypothetical protein; hypothetical protein 4578906 5742922 Cphy_3723 Clostridium phytofermentans ISDg hypothetical protein YP_001560809.1 4577671 R 357809 CDS YP_001560810.1 160881842 5742923 4579161..4579754 1 NC_010001.1 hypothetical protein 4579754 5742923 Cphy_3724 Clostridium phytofermentans ISDg hypothetical protein YP_001560810.1 4579161 D 357809 CDS YP_001560811.1 160881843 5742924 complement(4579966..4580838) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; KEGG: mta:Moth_1138 histidine kinase; histidine kinase 4580838 5742924 Cphy_3725 Clostridium phytofermentans ISDg histidine kinase YP_001560811.1 4579966 R 357809 CDS YP_001560812.1 160881844 5742925 4580918..4581334 1 NC_010001.1 PFAM: histidine triad (HIT) protein; KEGG: bha:BH1189 Hit-like protein involved in cell-cycle regulation; histidine triad (HIT) protein 4581334 5742925 Cphy_3726 Clostridium phytofermentans ISDg histidine triad (HIT) protein YP_001560812.1 4580918 D 357809 CDS YP_001560813.1 160881845 5742926 complement(4581589..4582656) 1 NC_010001.1 KEGG: ctc:CTC01743 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase 4582656 5742926 Cphy_3727 Clostridium phytofermentans ISDg UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase YP_001560813.1 4581589 R 357809 CDS YP_001560814.1 160881846 5742927 complement(4582778..4583026) 1 NC_010001.1 KEGG: bvu:BVU_3470 hypothetical protein; hypothetical protein 4583026 5742927 Cphy_3728 Clostridium phytofermentans ISDg hypothetical protein YP_001560814.1 4582778 R 357809 CDS YP_001560815.1 160881847 5742928 4583287..4583991 1 NC_010001.1 PFAM: purine or other phosphorylase family 1; KEGG: cdf:CD2611 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; adenosylhomocysteine nucleosidase 4583991 5742928 Cphy_3729 Clostridium phytofermentans ISDg adenosylhomocysteine nucleosidase YP_001560815.1 4583287 D 357809 CDS YP_001560816.1 160881848 5742929 4584093..4584605 1 NC_010001.1 PFAM: 3H domain protein; Helix-turn-helix type 11 domain protein; KEGG: tte:TTE0520 hypothetical protein; helix-turn-helix type 11 domain-containing protein 4584605 5742929 Cphy_3730 Clostridium phytofermentans ISDg helix-turn-helix type 11 domain-containing protein YP_001560816.1 4584093 D 357809 CDS YP_001560817.1 160881849 5742930 4584824..4585897 1 NC_010001.1 KEGG: amt:Amet_0021 phosphotransferase system, EIIC; phosphotransferase system, EIIC 4585897 5742930 Cphy_3731 Clostridium phytofermentans ISDg phosphotransferase system, EIIC YP_001560817.1 4584824 D 357809 CDS YP_001560818.1 160881850 5742931 complement(4586209..4586772) 1 NC_010001.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: ctc:CTC01815 phosphoesterase; phosphodiesterase 4586772 5742931 Cphy_3732 Clostridium phytofermentans ISDg phosphodiesterase YP_001560818.1 4586209 R 357809 CDS YP_001560819.1 160881851 5742932 4587028..4587873 1 NC_010001.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: mla:Mlab_1047 hypothetical protein; glycerophosphoryl diester phosphodiesterase 4587873 5742932 Cphy_3733 Clostridium phytofermentans ISDg glycerophosphoryl diester phosphodiesterase YP_001560819.1 4587028 D 357809 CDS YP_001560820.1 160881852 5742933 complement(4588069..4588929) 1 NC_010001.1 KEGG: tte:TTE0157 hypothetical protein; hypothetical protein 4588929 5742933 Cphy_3734 Clostridium phytofermentans ISDg hypothetical protein YP_001560820.1 4588069 R 357809 CDS YP_001560821.1 160881853 5742934 complement(4588982..4589401) 1 NC_010001.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: bha:BH3753 ATP synthase epsilon subunit; ATP synthase F1 subunit epsilon 4589401 5742934 Cphy_3735 Clostridium phytofermentans ISDg ATP synthase F1 subunit epsilon YP_001560821.1 4588982 R 357809 CDS YP_001560822.1 160881854 5742935 complement(4589411..4590829) 1 NC_010001.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 4590829 5742935 Cphy_3736 Clostridium phytofermentans ISDg F0F1 ATP synthase subunit beta YP_001560822.1 4589411 R 357809 CDS YP_001560823.1 160881855 5742936 complement(4590848..4591723) 1 NC_010001.1 KEGG: amt:Amet_0352 ATP synthase F1, gamma subunit; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; ATP synthase F1 subunit gamma 4591723 5742936 Cphy_3737 Clostridium phytofermentans ISDg ATP synthase F1 subunit gamma YP_001560823.1 4590848 R 357809 CDS YP_001560824.1 160881856 5742937 complement(4591742..4593250) 1 NC_010001.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 4593250 5742937 Cphy_3738 Clostridium phytofermentans ISDg F0F1 ATP synthase subunit alpha YP_001560824.1 4591742 R 357809 CDS YP_001560825.1 160881857 5742938 complement(4593308..4593856) 1 NC_010001.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: pth:PTH_2815 F0F1-type ATP synthase, delta subunit; ATP synthase F1 subunit delta 4593856 5742938 Cphy_3739 Clostridium phytofermentans ISDg ATP synthase F1 subunit delta YP_001560825.1 4593308 R 357809 CDS YP_001560826.1 160881858 5742939 complement(4593844..4594428) 1 NC_010001.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: cdf:CD3472 ATP synthase B chain; ATP synthase F0 subunit B 4594428 5742939 Cphy_3740 Clostridium phytofermentans ISDg ATP synthase F0 subunit B YP_001560826.1 4593844 R 357809 CDS YP_001560827.1 160881859 5742940 complement(4594468..4594728) 1 NC_010001.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 4594728 5742940 Cphy_3741 Clostridium phytofermentans ISDg F0F1 ATP synthase subunit C YP_001560827.1 4594468 R 357809 CDS YP_001560828.1 160881860 5742941 complement(4594777..4595520) 1 NC_010001.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: amt:Amet_0346 ATP synthase F0, A subunit; ATP synthase F0 subunit A 4595520 5742941 Cphy_3742 Clostridium phytofermentans ISDg ATP synthase F0 subunit A YP_001560828.1 4594777 R 357809 CDS YP_001560829.1 160881861 5742942 complement(4595559..4595939) 1 NC_010001.1 KEGG: amt:Amet_0345 hypothetical protein; hypothetical protein 4595939 5742942 Cphy_3743 Clostridium phytofermentans ISDg hypothetical protein YP_001560829.1 4595559 R 357809 CDS YP_001560830.1 160881862 5742943 complement(4596000..4596293) 1 NC_010001.1 KEGG: sat:SYN_00586 hypothetical membrane protein; hypothetical protein 4596293 5742943 Cphy_3744 Clostridium phytofermentans ISDg hypothetical protein YP_001560830.1 4596000 R 357809 CDS YP_001560831.1 160881863 5742944 complement(4596550..4596978) 1 NC_010001.1 KEGG: cpr:CPR_2173 ribose 5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; RpiB/LacA/LacB family sugar-phosphate isomerase 4596978 5742944 Cphy_3745 Clostridium phytofermentans ISDg RpiB/LacA/LacB family sugar-phosphate isomerase YP_001560831.1 4596550 R 357809 CDS YP_001560832.1 160881864 5742945 complement(4597110..4597565) 1 NC_010001.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sha:SH0920 low molecular weight protein-tyrosine-phosphatase; protein tyrosine phosphatase 4597565 5742945 Cphy_3746 Clostridium phytofermentans ISDg protein tyrosine phosphatase YP_001560832.1 4597110 R 357809 CDS YP_001560833.1 160881865 5742946 complement(4597610..4598668) 1 NC_010001.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: cbf:CLI_0197 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 4598668 5742946 Cphy_3747 Clostridium phytofermentans ISDg Sua5/YciO/YrdC/YwlC family protein YP_001560833.1 4597610 R 357809 CDS YP_001560834.1 160881866 5742947 complement(4598730..4599443) 1 NC_010001.1 PFAM: cell wall hydrolase/autolysin; KEGG: cdf:CD0106 germination-specific N-acetylmuramoyl-L-alanine amidase; cell wall hydrolase/autolysin 4599443 5742947 Cphy_3748 Clostridium phytofermentans ISDg cell wall hydrolase/autolysin YP_001560834.1 4598730 R 357809 CDS YP_001560835.1 160881867 5742948 complement(4599498..4601201) 1 NC_010001.1 PFAM: glycoside hydrolase family 18; SMART: chitinase II; KEGG: cth:Cthe_2895 glycoside hydrolase, family 18; glycoside hydrolase family protein 4601201 5742948 Cphy_3749 Clostridium phytofermentans ISDg glycoside hydrolase family protein YP_001560835.1 4599498 R 357809 CDS YP_001560836.1 160881868 5742949 complement(4601831..4602433) 1 NC_010001.1 hypothetical protein 4602433 5742949 Cphy_3750 Clostridium phytofermentans ISDg hypothetical protein YP_001560836.1 4601831 R 357809 CDS YP_001560837.1 160881869 5742950 complement(4602556..4603992) 1 NC_010001.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: cac:CAC0404 serine/threonine protein kinase fused to TPR repeats domain; serine/threonine protein kinase 4603992 5742950 Cphy_3751 Clostridium phytofermentans ISDg serine/threonine protein kinase YP_001560837.1 4602556 R 357809 CDS YP_001560838.1 160881870 5742951 4604264..4605049 1 NC_010001.1 KEGG: cth:Cthe_0085 negative regulator of genetic competence; negative regulator of genetic competence sporulation and motility-like protein 4605049 5742951 Cphy_3752 Clostridium phytofermentans ISDg negative regulator of genetic competence sporulation and motility-like protein YP_001560838.1 4604264 D 357809 CDS YP_001560839.1 160881871 5744705 complement(4605326..4605526) 1 NC_010001.1 KEGG: cth:Cthe_3092 conserved hypothetical protein, CF-27 family; hypothetical protein 4605526 5744705 Cphy_3753 Clostridium phytofermentans ISDg hypothetical protein YP_001560839.1 4605326 R 357809 CDS YP_001560840.1 160881872 5744706 4605787..4605954 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cno:NT01CX_0756 ferredoxin; 4Fe-4S ferredoxin 4605954 5744706 Cphy_3754 Clostridium phytofermentans ISDg 4Fe-4S ferredoxin YP_001560840.1 4605787 D 357809 CDS YP_001560841.1 160881873 5744707 complement(4606180..4607064) 1 NC_010001.1 SMART: regulatory protein MerR; KEGG: swo:Swol_0385 transcriptional regulator, MerR family; MerR family transcriptional regulator 4607064 5744707 Cphy_3755 Clostridium phytofermentans ISDg MerR family transcriptional regulator YP_001560841.1 4606180 R 357809 CDS YP_001560842.1 160881874 5744708 complement(4607336..4608664) 1 NC_010001.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: cth:Cthe_2256 replicative DNA helicase; replicative DNA helicase 4608664 5744708 Cphy_3756 Clostridium phytofermentans ISDg replicative DNA helicase YP_001560842.1 4607336 R 357809 CDS YP_001560843.1 160881875 5744709 complement(4608679..4609125) 1 NC_010001.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4609125 rplI 5744709 rplI Clostridium phytofermentans ISDg 50S ribosomal protein L9 YP_001560843.1 4608679 R 357809 CDS YP_001560844.1 160881876 5744710 complement(4609126..4611180) 1 NC_010001.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cth:Cthe_2258 phosphoesterase, RecJ-like protein; phosphoesterase domain-containing protein 4611180 5744710 Cphy_3758 Clostridium phytofermentans ISDg phosphoesterase domain-containing protein YP_001560844.1 4609126 R 357809 CDS YP_001560845.1 160881877 5744711 4611614..4612393 1 NC_010001.1 PFAM: PT repeat-containing protein; KEGG: hwa:HQ1193A probable cell surface glycoprotein; PT repeat-containing protein 4612393 5744711 Cphy_3759 Clostridium phytofermentans ISDg PT repeat-containing protein YP_001560845.1 4611614 D 357809 CDS YP_001560846.1 160881878 5744712 4612808..4613335 1 NC_010001.1 hypothetical protein 4613335 5744712 Cphy_3760 Clostridium phytofermentans ISDg hypothetical protein YP_001560846.1 4612808 D 357809 CDS YP_001560847.1 160881879 5744713 complement(4613489..4614553) 1 NC_010001.1 hypothetical protein 4614553 5744713 Cphy_3761 Clostridium phytofermentans ISDg hypothetical protein YP_001560847.1 4613489 R 357809 CDS YP_001560848.1 160881880 5744714 complement(4614692..4616020) 1 NC_010001.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_2520 MATE efflux family protein; MATE efflux family protein 4616020 5744714 Cphy_3762 Clostridium phytofermentans ISDg MATE efflux family protein YP_001560848.1 4614692 R 357809 CDS YP_001560849.1 160881881 5744715 4616349..4617227 1 NC_010001.1 hypothetical protein 4617227 5744715 Cphy_3763 Clostridium phytofermentans ISDg hypothetical protein YP_001560849.1 4616349 D 357809 CDS YP_001560850.1 160881882 5744716 complement(4617559..4618257) 1 NC_010001.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cbe:Cbei_4660 transcriptional regulator, GntR family; GntR family transcriptional regulator 4618257 5744716 Cphy_3764 Clostridium phytofermentans ISDg GntR family transcriptional regulator YP_001560850.1 4617559 R 357809 CDS YP_001560851.1 160881883 5744717 complement(4618241..4618942) 1 NC_010001.1 hypothetical protein 4618942 5744717 Cphy_3765 Clostridium phytofermentans ISDg hypothetical protein YP_001560851.1 4618241 R 357809 CDS YP_001560852.1 160881884 5744718 complement(4619029..4621161) 1 NC_010001.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: tte:TTE2591 N-methylhydaintoinase A; hydantoinase/oxoprolinase 4621161 5744718 Cphy_3766 Clostridium phytofermentans ISDg hydantoinase/oxoprolinase YP_001560852.1 4619029 R 357809 CDS YP_001560853.1 160881885 5744719 complement(4621326..4622675) 1 NC_010001.1 PFAM: Citrate transporter; KEGG: ooe:OEOE_0129 H+/gluconate symporter; citrate transporter 4622675 5744719 Cphy_3767 Clostridium phytofermentans ISDg citrate transporter YP_001560853.1 4621326 R 357809 CDS YP_001560854.1 160881886 5744720 complement(4623483..4623866) 1 NC_010001.1 hypothetical protein 4623866 5744720 Cphy_3768 Clostridium phytofermentans ISDg hypothetical protein YP_001560854.1 4623483 R 357809 CDS YP_001560855.1 160881887 5744721 complement(4623893..4624492) 1 NC_010001.1 hypothetical protein 4624492 5744721 Cphy_3769 Clostridium phytofermentans ISDg hypothetical protein YP_001560855.1 4623893 R 357809 CDS YP_001560856.1 160881888 5744722 complement(4624494..4625195) 1 NC_010001.1 hypothetical protein 4625195 5744722 Cphy_3770 Clostridium phytofermentans ISDg hypothetical protein YP_001560856.1 4624494 R 357809 CDS YP_001560857.1 160881889 5744723 complement(4625208..4626509) 1 NC_010001.1 KEGG: pin:Ping_1307 predicted antifreeze protein type I; antifreeze protein type I 4626509 5744723 Cphy_3771 Clostridium phytofermentans ISDg antifreeze protein type I YP_001560857.1 4625208 R 357809 CDS YP_001560858.1 160881890 5744724 complement(4626725..4627000) 1 NC_010001.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4627000 rpsR 5744724 rpsR Clostridium phytofermentans ISDg 30S ribosomal protein S18 YP_001560858.1 4626725 R 357809 CDS YP_001560859.1 160881891 5744725 complement(4627079..4627519) 1 NC_010001.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cth:Cthe_2186 single-strand binding protein; single-strand binding protein 4627519 5744725 Cphy_3773 Clostridium phytofermentans ISDg single-strand binding protein YP_001560859.1 4627079 R 357809 CDS YP_001560860.1 160881892 5744726 complement(4627539..4627826) 1 NC_010001.1 PFAM: ribosomal protein S6; KEGG: mta:Moth_0128 ribosomal protein S6; 30S ribosomal protein S6 4627826 5744726 Cphy_3774 Clostridium phytofermentans ISDg 30S ribosomal protein S6 YP_001560860.1 4627539 R 357809 CDS YP_001560861.1 160881893 5744727 complement(4628322..4628507) 1 NC_010001.1 PFAM: protein of unknown function DUF951; KEGG: sth:STH3322 hypothetical protein; hypothetical protein 4628507 5744727 Cphy_3775 Clostridium phytofermentans ISDg hypothetical protein YP_001560861.1 4628322 R 357809 CDS YP_001560862.1 160881894 5744728 4628800..4629471 1 NC_010001.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: cac:CAC0882 predicted membrane protein, hemolysin III homolog; hemolysin III family channel protein 4629471 5744728 Cphy_3776 Clostridium phytofermentans ISDg hemolysin III family channel protein YP_001560862.1 4628800 D 357809 CDS YP_001560863.1 160881895 5744729 complement(4630004..4630855) 1 NC_010001.1 PFAM: peptidase M23B; KEGG: amt:Amet_0360 peptidase M23B; peptidase M23B 4630855 5744729 Cphy_3777 Clostridium phytofermentans ISDg peptidase M23B YP_001560863.1 4630004 R 357809 CDS YP_001560864.1 160881896 5744730 complement(4630973..4631749) 1 NC_010001.1 PFAM: protein of unknown function DUF990; KEGG: tde:TDE0485 membrane protein; hypothetical protein 4631749 5744730 Cphy_3778 Clostridium phytofermentans ISDg hypothetical protein YP_001560864.1 4630973 R 357809 CDS YP_001560865.1 160881897 5744731 complement(4631756..4632532) 1 NC_010001.1 KEGG: tde:TDE0486 membrane protein; hypothetical protein 4632532 5744731 Cphy_3779 Clostridium phytofermentans ISDg hypothetical protein YP_001560865.1 4631756 R 357809 CDS YP_001560866.1 160881898 5744732 complement(4632622..4633419) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0487 ABC transporter, ATP-binding protein; ABC transporter 4633419 5744732 Cphy_3780 Clostridium phytofermentans ISDg ABC transporter YP_001560866.1 4632622 R 357809 CDS YP_001560867.1 160881899 5744733 4633787..4635553 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: lwe:lwe0099 ABC transporter, ATP-binding/permease; ABC transporter related 4635553 5744733 Cphy_3781 Clostridium phytofermentans ISDg ABC transporter related YP_001560867.1 4633787 D 357809 CDS YP_001560868.1 160881900 5744734 4635540..4637324 1 NC_010001.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: lwe:lwe0098 ABC transporter, ATP-binding/permease; ABC transporter 4637324 5744734 Cphy_3782 Clostridium phytofermentans ISDg ABC transporter YP_001560868.1 4635540 D 357809 CDS YP_001560869.1 160881901 5744735 4637694..4638797 1 NC_010001.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cpe:CPE0284 probable transcriptional regulator; cell envelope-related transcriptional attenuator 4638797 5744735 Cphy_3783 Clostridium phytofermentans ISDg cell envelope-related transcriptional attenuator YP_001560869.1 4637694 D 357809 CDS YP_001560870.1 160881902 5744736 complement(4638930..4639193) 1 NC_010001.1 KEGG: cdf:CD1007 hypothetical protein; hypothetical protein 4639193 5744736 Cphy_3784 Clostridium phytofermentans ISDg hypothetical protein YP_001560870.1 4638930 R 357809 CDS YP_001560871.1 160881903 5744737 4639618..4641696 1 NC_010001.1 PFAM: glycoside hydrolase family 31; KEGG: cpf:CPF_2648 glycosyl hydrolase, family 31; alpha-glucosidase 4641696 5744737 Cphy_3785 Clostridium phytofermentans ISDg alpha-glucosidase YP_001560871.1 4639618 D 357809 CDS YP_001560872.1 160881904 5744738 complement(4641842..4641994) 1 NC_010001.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_3119 flavin reductase-like, FMN-binding; rubredoxin-type Fe(Cys)4 protein 4641994 5744738 Cphy_3786 Clostridium phytofermentans ISDg rubredoxin-type Fe(Cys)4 protein YP_001560872.1 4641842 R 357809 CDS YP_001560873.1 160881905 5744739 4642383..4643114 1 NC_010001.1 TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: cbo:CBO0416 probable acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 4643114 5744739 Cphy_3787 Clostridium phytofermentans ISDg 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001560873.1 4642383 D 357809 CDS YP_001560874.1 160881906 5744740 4643248..4643703 1 NC_010001.1 hypothetical protein 4643703 5744740 Cphy_3788 Clostridium phytofermentans ISDg hypothetical protein YP_001560874.1 4643248 D 357809 CDS YP_001560875.1 160881907 5744741 complement(4643963..4644391) 1 NC_010001.1 PFAM: Domain of unknown function DUF1934; KEGG: tte:TTE2534 hypothetical protein; hypothetical protein 4644391 5744741 Cphy_3789 Clostridium phytofermentans ISDg hypothetical protein YP_001560875.1 4643963 R 357809 CDS YP_001560876.1 160881908 5744742 complement(4644421..4645233) 1 NC_010001.1 KEGG: csc:Csac_1373 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase 4645233 5744742 Cphy_3790 Clostridium phytofermentans ISDg glutamate racemase YP_001560876.1 4644421 R 357809 CDS YP_001560877.1 160881909 5744743 complement(4645252..4646313) 1 NC_010001.1 KEGG: cth:Cthe_1938 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 4646313 5744743 Cphy_3791 Clostridium phytofermentans ISDg D-alanine--D-alanine ligase YP_001560877.1 4645252 R 357809 CDS YP_001560878.1 160881910 5744744 4646742..4647464 1 NC_010001.1 TIGRFAM: stage II sporulation protein R; PFAM: Sporulation stage II protein R; KEGG: cbh:CLC_0174 stage II sporulation protein R; stage II sporulation protein R 4647464 5744744 Cphy_3792 Clostridium phytofermentans ISDg stage II sporulation protein R YP_001560878.1 4646742 D 357809 CDS YP_001560879.1 160881911 5744745 4647589..4648464 1 NC_010001.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 4648464 ipk 5744745 ipk Clostridium phytofermentans ISDg 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_001560879.1 4647589 D 357809 CDS YP_001560880.1 160881912 5744746 4648777..4650348 1 NC_010001.1 PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_2402 peptidoglycan-binding LysM; peptidoglycan-binding LysM 4650348 5744746 Cphy_3794 Clostridium phytofermentans ISDg peptidoglycan-binding LysM YP_001560880.1 4648777 D 357809 CDS YP_001560881.1 160881913 5744747 complement(4650524..4651096) 1 NC_010001.1 KEGG: amt:Amet_0774 hypothetical protein; hypothetical protein 4651096 5744747 Cphy_3795 Clostridium phytofermentans ISDg hypothetical protein YP_001560881.1 4650524 R 357809 CDS YP_001560882.1 160881914 5744748 complement(4651348..4652070) 1 NC_010001.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: tte:TTE0889 predicted metal-dependent phosphoesterase (PHP family); phosphotransferase domain-containing protein 4652070 5744748 Cphy_3796 Clostridium phytofermentans ISDg phosphotransferase domain-containing protein YP_001560882.1 4651348 R 357809 CDS YP_001560883.1 160881915 5744749 complement(4652051..4652398) 1 NC_010001.1 KEGG: tte:TTE0888 hypothetical protein; hypothetical protein 4652398 5744749 Cphy_3797 Clostridium phytofermentans ISDg hypothetical protein YP_001560883.1 4652051 R 357809 CDS YP_001560884.1 160881916 5744750 complement(4652419..4653702) 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: tte:TTE0887 ferredoxin 2; Fe-S cluster domain-containing protein 4653702 5744750 Cphy_3798 Clostridium phytofermentans ISDg Fe-S cluster domain-containing protein YP_001560884.1 4652419 R 357809 CDS YP_001560885.1 160881917 5744751 complement(4653842..4654264) 1 NC_010001.1 KEGG: cth:Cthe_0334 anti-sigma regulatory factor, serine/threonine protein kinase; anti-sigma regulatory factor 4654264 5744751 Cphy_3799 Clostridium phytofermentans ISDg anti-sigma regulatory factor YP_001560885.1 4653842 R 357809 CDS YP_001560886.1 160881918 5744752 complement(4654261..4654611) 1 NC_010001.1 PFAM: DRTGG domain protein; KEGG: cth:Cthe_0333 hypothetical protein; DRTGG domain-containing protein 4654611 5744752 Cphy_3800 Clostridium phytofermentans ISDg DRTGG domain-containing protein YP_001560886.1 4654261 R 357809 CDS YP_001560887.1 160881919 5744753 4655038..4655532 1 NC_010001.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: cth:Cthe_0338 NADH-quinone oxidoreductase, E subunit; NADH dehydrogenase (ubiquinone) 24 kDa subunit 4655532 5744753 Cphy_3801 Clostridium phytofermentans ISDg NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_001560887.1 4655038 D 357809 CDS YP_001560888.1 160881920 5744754 4655605..4656162 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; KEGG: pdi:BDI_1092 hypothetical protein; histidine kinase 4656162 5744754 Cphy_3802 Clostridium phytofermentans ISDg histidine kinase YP_001560888.1 4655605 D 357809 CDS YP_001560889.1 160881921 5744755 4656224..4656595 1 NC_010001.1 KEGG: csc:Csac_1862 hypothetical protein; hypothetical protein 4656595 5744755 Cphy_3803 Clostridium phytofermentans ISDg hypothetical protein YP_001560889.1 4656224 D 357809 CDS YP_001560890.1 160881922 5744756 4656611..4658398 1 NC_010001.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: csc:Csac_1863 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 4658398 5744756 Cphy_3804 Clostridium phytofermentans ISDg NADH dehydrogenase (quinone) YP_001560890.1 4656611 D 357809 CDS YP_001560891.1 160881923 5744757 4658458..4660206 1 NC_010001.1 TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: cth:Cthe_0342 hydrogenase, Fe-only; hydrogenase, Fe-only 4660206 5744757 Cphy_3805 Clostridium phytofermentans ISDg hydrogenase, Fe-only YP_001560891.1 4658458 D 357809 CDS YP_001560892.1 160881924 5744758 complement(4660386..4660784) 1 NC_010001.1 hypothetical protein 4660784 5744758 Cphy_3806 Clostridium phytofermentans ISDg hypothetical protein YP_001560892.1 4660386 R 357809 CDS YP_001560893.1 160881925 5744759 complement(4660862..4661695) 1 NC_010001.1 hypothetical protein 4661695 5744759 Cphy_3807 Clostridium phytofermentans ISDg hypothetical protein YP_001560893.1 4660862 R 357809 CDS YP_001560894.1 160881926 5744760 complement(4661876..4662448) 1 NC_010001.1 KEGG: cdf:CD1903 lipoprotein signal peptidase; lipoprotein signal peptidase 4662448 5744760 Cphy_3808 Clostridium phytofermentans ISDg lipoprotein signal peptidase YP_001560894.1 4661876 R 357809 CDS YP_001560895.1 160881927 5744761 complement(4662474..4662908) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bat:BAS3058 spermine/spermidine acetyltransferase; N-acetyltransferase GCN5 4662908 5744761 Cphy_3809 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001560895.1 4662474 R 357809 CDS YP_001560896.1 160881928 5744762 4663300..4664256 1 NC_010001.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tte:TTE0367 MoxR-like ATPases; ATPase 4664256 5744762 Cphy_3810 Clostridium phytofermentans ISDg ATPase YP_001560896.1 4663300 D 357809 CDS YP_001560897.1 160881929 5744763 4664480..4665622 1 NC_010001.1 PFAM: protein of unknown function DUF58; KEGG: csc:Csac_0672 protein of unknown function DUF58; hypothetical protein 4665622 5744763 Cphy_3811 Clostridium phytofermentans ISDg hypothetical protein YP_001560897.1 4664480 D 357809 CDS YP_001560898.1 160881930 5744764 4665912..4666826 1 NC_010001.1 hypothetical protein 4666826 5744764 Cphy_3812 Clostridium phytofermentans ISDg hypothetical protein YP_001560898.1 4665912 D 357809 CDS YP_001560899.1 160881931 5744765 4666907..4667326 1 NC_010001.1 hypothetical protein 4667326 5744765 Cphy_3813 Clostridium phytofermentans ISDg hypothetical protein YP_001560899.1 4666907 D 357809 CDS YP_001560900.1 160881932 5744766 4667936..4668178 1 NC_010001.1 PFAM: protein of unknown function DUF1021; KEGG: cth:Cthe_2401 protein of unknown function DUF1021; hypothetical protein 4668178 5744766 Cphy_3814 Clostridium phytofermentans ISDg hypothetical protein YP_001560900.1 4667936 D 357809 CDS YP_001560901.1 160881933 5744767 4668370..4668768 1 NC_010001.1 PFAM: ferric-uptake regulator; KEGG: chy:CHY_1135 transcriptional regulator, Fur family; ferric uptake regulator family protein 4668768 5744767 Cphy_3815 Clostridium phytofermentans ISDg ferric uptake regulator family protein YP_001560901.1 4668370 D 357809 CDS YP_001560902.1 160881934 5744768 4669320..4669862 1 NC_010001.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cdf:CD1474 ruberythrin; rubrerythrin 4669862 5744768 Cphy_3816 Clostridium phytofermentans ISDg rubrerythrin YP_001560902.1 4669320 D 357809 CDS YP_001560903.1 160881935 5744769 4670157..4670885 1 NC_010001.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bsu:BG12973 similar to hypothetical proteins; HAD family hydrolase 4670885 5744769 Cphy_3817 Clostridium phytofermentans ISDg HAD family hydrolase YP_001560903.1 4670157 D 357809 CDS YP_001560904.1 160881936 5744770 complement(4671174..4672757) 1 NC_010001.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cno:NT01CX_0997 ATP-dependent RNA helicase; DEAD/DEAH box helicase 4672757 5744770 Cphy_3818 Clostridium phytofermentans ISDg DEAD/DEAH box helicase YP_001560904.1 4671174 R 357809 CDS YP_001560905.1 160881937 5744771 complement(4673155..4675740) 1 NC_010001.1 KEGG: sfu:Sfum_0263 ATPase AAA-2 domain protein; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB 4675740 5744771 Cphy_3819 Clostridium phytofermentans ISDg ATP-dependent chaperone ClpB YP_001560905.1 4673155 R 357809 CDS YP_001560906.1 160881938 5744772 complement(4676284..4677741) 1 NC_010001.1 PFAM: PGAP1 family protein; KEGG: oih:OB2742 hypothetical protein; PGAP1 family protein 4677741 5744772 Cphy_3820 Clostridium phytofermentans ISDg PGAP1 family protein YP_001560906.1 4676284 R 357809 CDS YP_001560907.1 160881939 5744773 complement(4677960..4678865) 1 NC_010001.1 PFAM: band 7 protein; KEGG: cth:Cthe_0666 HflC protein; hypothetical protein 4678865 5744773 Cphy_3821 Clostridium phytofermentans ISDg hypothetical protein YP_001560907.1 4677960 R 357809 CDS YP_001560908.1 160881940 5744774 complement(4678867..4679802) 1 NC_010001.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: cth:Cthe_0665 HflK protein; HflK protein 4679802 5744774 Cphy_3822 Clostridium phytofermentans ISDg HflK protein YP_001560908.1 4678867 R 357809 CDS YP_001560909.1 160881941 5744775 complement(4680283..4681890) 1 NC_010001.1 KEGG: rno:679495 hypothetical protein LOC679495; hypothetical protein 4681890 5744775 Cphy_3823 Clostridium phytofermentans ISDg hypothetical protein YP_001560909.1 4680283 R 357809 CDS YP_001560910.1 160881942 5744776 complement(4682035..4683078) 1 NC_010001.1 TIGRFAM: spore coat protein, CotS family; KEGG: ctc:CTC00273 spore coat protein; CotS family spore coat protein 4683078 5744776 Cphy_3824 Clostridium phytofermentans ISDg CotS family spore coat protein YP_001560910.1 4682035 R 357809 CDS YP_001560911.1 160881943 5744777 complement(4683234..4684028) 1 NC_010001.1 hypothetical protein 4684028 5744777 Cphy_3825 Clostridium phytofermentans ISDg hypothetical protein YP_001560911.1 4683234 R 357809 CDS YP_001560912.1 160881944 5744778 complement(4684021..4684494) 1 NC_010001.1 KEGG: cdf:CD2186 phage-related hypothetical protein; hypothetical protein 4684494 5744778 Cphy_3826 Clostridium phytofermentans ISDg hypothetical protein YP_001560912.1 4684021 R 357809 CDS YP_001560913.1 160881945 5744779 complement(4684731..4686110) 1 NC_010001.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: ctc:CTC01205 tRNA nucleotidyltransferase (CCA-adding enzyme); polynucleotide adenylyltransferase 4686110 5744779 Cphy_3827 Clostridium phytofermentans ISDg polynucleotide adenylyltransferase YP_001560913.1 4684731 R 357809 CDS YP_001560914.1 160881946 5744780 complement(4686173..4687300) 1 NC_010001.1 PFAM: lipolytic protein G-D-S-L family; KEGG: ctc:CTC01503 phospholipase-subfamily protein; GDSL family lipase 4687300 5744780 Cphy_3828 Clostridium phytofermentans ISDg GDSL family lipase YP_001560914.1 4686173 R 357809 CDS YP_001560915.1 160881947 5744781 4687654..4688367 1 NC_010001.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cbe:Cbei_4096 GntR domain protein; GntR family transcriptional regulator 4688367 5744781 Cphy_3829 Clostridium phytofermentans ISDg GntR family transcriptional regulator YP_001560915.1 4687654 D 357809 CDS YP_001560916.1 160881948 5744782 4688933..4690654 1 NC_010001.1 PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: cbe:Cbei_4095 dihydroxy-acid dehydratase; dihydroxy-acid dehydratase 4690654 5744782 Cphy_3830 Clostridium phytofermentans ISDg dihydroxy-acid dehydratase YP_001560916.1 4688933 D 357809 CDS YP_001560917.1 160881949 5744783 4690700..4692124 1 NC_010001.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: gtn:GTNG_1835 low-affinity gluconate transporter; gluconate transporter 4692124 5744783 Cphy_3831 Clostridium phytofermentans ISDg gluconate transporter YP_001560917.1 4690700 D 357809 CDS YP_001560918.1 160881950 5744784 complement(4692224..4695499) 1 NC_010001.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 4695499 ileS 5744784 ileS Clostridium phytofermentans ISDg isoleucyl-tRNA synthetase YP_001560918.1 4692224 R 357809 CDS YP_001560919.1 160881951 5744785 4696106..4696300 1 NC_010001.1 hypothetical protein 4696300 5744785 Cphy_3833 Clostridium phytofermentans ISDg hypothetical protein YP_001560919.1 4696106 D 357809 CDS YP_001560920.1 160881952 5744786 complement(4696423..4697796) 1 NC_010001.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase 4697796 5744786 Cphy_3834 Clostridium phytofermentans ISDg citrate synthase YP_001560920.1 4696423 R 357809 CDS YP_001560921.1 160881953 5744787 complement(4698116..4698547) 1 NC_010001.1 PFAM: regulatory protein MarR; KEGG: dsy:DSY0928 hypothetical protein; MarR family transcriptional regulator 4698547 5744787 Cphy_3835 Clostridium phytofermentans ISDg MarR family transcriptional regulator YP_001560921.1 4698116 R 357809 CDS YP_001560922.1 160881954 5744788 complement(4698915..4700372) 1 NC_010001.1 TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; KEGG: amt:Amet_0094 nicotinate phosphoribosyltransferase; nicotinate phosphoribosyltransferase 4700372 5744788 Cphy_3836 Clostridium phytofermentans ISDg nicotinate phosphoribosyltransferase YP_001560922.1 4698915 R 357809 CDS YP_001560923.1 160881955 5744789 complement(4700500..4701933) 1 NC_010001.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 4701933 5744789 Cphy_3837 Clostridium phytofermentans ISDg prolyl-tRNA synthetase YP_001560923.1 4700500 R 357809 CDS YP_001560924.1 160881956 5744790 complement(4702396..4703430) 1 NC_010001.1 TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118; KEGG: tte:TTE0022 predicted permease; sporulation integral membrane protein YtvI 4703430 5744790 Cphy_3838 Clostridium phytofermentans ISDg sporulation integral membrane protein YtvI YP_001560924.1 4702396 R 357809 CDS YP_001560925.1 160881957 5744791 complement(4703710..4704465) 1 NC_010001.1 KEGG: msi:Msm_0734 cytidylate kinase, Cmk; cytidylate kinase 4704465 5744791 Cphy_3839 Clostridium phytofermentans ISDg cytidylate kinase YP_001560925.1 4703710 R 357809 CDS YP_001560926.1 160881958 5744792 complement(4704694..4705278) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1490 hypothetical protein; ABC transporter 4705278 5744792 Cphy_3840 Clostridium phytofermentans ISDg ABC transporter YP_001560926.1 4704694 R 357809 CDS YP_001560927.1 160881959 5744793 complement(4705364..4706224) 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1489 hypothetical protein; binding-protein-dependent transport system inner membrane protein 4706224 5744793 Cphy_3841 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001560927.1 4705364 R 357809 CDS YP_001560928.1 160881960 5744794 complement(4706458..4707231) 1 NC_010001.1 KEGG: cth:Cthe_1411 tryptophan synthase, alpha subunit; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; tryptophan synthase subunit alpha 4707231 5744794 Cphy_3842 Clostridium phytofermentans ISDg tryptophan synthase subunit alpha YP_001560928.1 4706458 R 357809 CDS YP_001560929.1 160881961 5744795 complement(4707224..4708408) 1 NC_010001.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 4708408 5744795 Cphy_3843 Clostridium phytofermentans ISDg tryptophan synthase subunit beta YP_001560929.1 4707224 R 357809 CDS YP_001560930.1 160881962 5744796 complement(4708443..4709099) 1 NC_010001.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: cac:CAC3159 phosphoribosylanthranilate isomerase; phosphoribosylanthranilate isomerase 4709099 5744796 Cphy_3844 Clostridium phytofermentans ISDg phosphoribosylanthranilate isomerase YP_001560930.1 4708443 R 357809 CDS YP_001560931.1 160881963 5744797 complement(4709206..4710021) 1 NC_010001.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 4710021 trpC 5744797 trpC Clostridium phytofermentans ISDg indole-3-glycerol-phosphate synthase YP_001560931.1 4709206 R 357809 CDS YP_001560932.1 160881964 5744798 complement(4710025..4711035) 1 NC_010001.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 4711035 trpD 5744798 trpD Clostridium phytofermentans ISDg anthranilate phosphoribosyltransferase YP_001560932.1 4710025 R 357809 CDS YP_001560933.1 160881965 5744799 complement(4711044..4711616) 1 NC_010001.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: cth:Cthe_0874 glutamine amidotransferase of anthranilate synthase; glutamine amidotransferase of anthranilate synthase 4711616 5744799 Cphy_3847 Clostridium phytofermentans ISDg glutamine amidotransferase of anthranilate synthase YP_001560933.1 4711044 R 357809 CDS YP_001560934.1 160881966 5744800 complement(4711613..4713079) 1 NC_010001.1 KEGG: msi:Msm_1146 anthranilate/para-aminobenzoate synthase component I, TrpE; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; anthranilate synthase component I 4713079 5744800 Cphy_3848 Clostridium phytofermentans ISDg anthranilate synthase component I YP_001560934.1 4711613 R 357809 CDS YP_001560935.1 160881967 5744801 complement(4713700..4714179) 1 NC_010001.1 KEGG: lbl:LBL_1556 endoflagellar biosynthesis chaperone; hypothetical protein 4714179 5744801 Cphy_3849 Clostridium phytofermentans ISDg hypothetical protein YP_001560935.1 4713700 R 357809 CDS YP_001560936.1 160881968 5744802 complement(4714233..4715741) 1 NC_010001.1 PFAM: flagellin domain protein; KEGG: drm:Dred_2433 flagellin domain protein; flagellin domain-containing protein 4715741 5744802 Cphy_3850 Clostridium phytofermentans ISDg flagellin domain-containing protein YP_001560936.1 4714233 R 357809 CDS YP_001560937.1 160881969 5744803 complement(4715762..4719172) 1 NC_010001.1 KEGG: pfa:PF11_0507 antigen 332; hypothetical protein 4719172 5744803 Cphy_3851 Clostridium phytofermentans ISDg hypothetical protein YP_001560937.1 4715762 R 357809 CDS YP_001560938.1 160881970 5744804 4719604..4721364 1 NC_010001.1 PFAM: protein of unknown function DUF885; KEGG: lbl:LBL_0029 hypothetical protein; hypothetical protein 4721364 5744804 Cphy_3852 Clostridium phytofermentans ISDg hypothetical protein YP_001560938.1 4719604 D 357809 CDS YP_001560939.1 160881971 5744805 4721888..4723555 1 NC_010001.1 KEGG: fno:Fnod_1444 phosphoenolpyruvate carboxykinase (ATP); phosphoenolpyruvate carboxykinase (ATP) 4723555 5744805 Cphy_3853 Clostridium phytofermentans ISDg phosphoenolpyruvate carboxykinase (ATP) YP_001560939.1 4721888 D 357809 CDS YP_001560940.1 160881972 5744806 4724145..4726538 1 NC_010001.1 PFAM: carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: vch:VC0612 cellobiose/cellodextrin-phosphorylase; glycosyltransferase 4726538 5744806 Cphy_3854 Clostridium phytofermentans ISDg glycosyltransferase YP_001560940.1 4724145 D 357809 CDS YP_001560941.1 160881973 5744807 4726828..4728252 1 NC_010001.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: vpa:VP2488 phosphoglucomutase/phosphomannomutase; phosphomannomutase 4728252 5744807 Cphy_3855 Clostridium phytofermentans ISDg phosphomannomutase YP_001560941.1 4726828 D 357809 CDS YP_001560942.1 160881974 5744808 complement(4728682..4729857) 1 NC_010001.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 4729857 5744808 Cphy_3856 Clostridium phytofermentans ISDg transposase IS204/IS1001/IS1096/IS1165 family protein YP_001560942.1 4728682 R 357809 CDS YP_001560943.1 160881975 5744809 4730021..4731766 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: csc:Csac_0683 histidine kinase internal region; signal transduction histidine kinase LytS 4731766 5744809 Cphy_3857 Clostridium phytofermentans ISDg signal transduction histidine kinase LytS YP_001560943.1 4730021 D 357809 CDS YP_001560944.1 160881976 5744810 4731867..4733216 1 NC_010001.1 PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_0682 extracellular solute-binding protein, family 1; extracellular solute-binding protein 4733216 5744810 Cphy_3858 Clostridium phytofermentans ISDg extracellular solute-binding protein YP_001560944.1 4731867 D 357809 CDS YP_001560945.1 160881977 5744811 4733354..4734235 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0775 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein 4734235 5744811 Cphy_3859 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001560945.1 4733354 D 357809 CDS YP_001560946.1 160881978 5744812 4734248..4735123 1 NC_010001.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0776 sugar ABC transporter permease; binding-protein-dependent transport system inner membrane protein 4735123 5744812 Cphy_3860 Clostridium phytofermentans ISDg binding-protein-dependent transport system inner membrane protein YP_001560946.1 4734248 D 357809 CDS YP_001560947.1 160881979 5744813 4735380..4736159 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bcl:ABC3646 two-component response regulator; two component AraC family transcriptional regulator 4736159 5744813 Cphy_3861 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001560947.1 4735380 D 357809 CDS YP_001560948.1 160881980 5744815 4736925..4744298 1 NC_010001.1 PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; KEGG: tpt:Tpet_0863 endo-1,4-beta-xylanase; endo-1,4-beta-xylanase 4744298 5744815 Cphy_3862 Clostridium phytofermentans ISDg endo-1,4-beta-xylanase YP_001560948.1 4736925 D 357809 CDS YP_001560949.1 160881981 5744816 complement(4744376..4745365) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1189 ABC transporter related protein; ABC transporter 4745365 5744816 Cphy_3863 Clostridium phytofermentans ISDg ABC transporter YP_001560949.1 4744376 R 357809 CDS YP_001560950.1 160881982 5744817 complement(4745367..4746149) 1 NC_010001.1 PFAM: protein of unknown function DUF990; KEGG: cth:Cthe_1188 protein of unknown function DUF990; hypothetical protein 4746149 5744817 Cphy_3864 Clostridium phytofermentans ISDg hypothetical protein YP_001560950.1 4745367 R 357809 CDS YP_001560951.1 160881983 5744818 complement(4746361..4747179) 1 NC_010001.1 PFAM: protein of unknown function DUF990; KEGG: cth:Cthe_1187 protein of unknown function DUF990; hypothetical protein 4747179 5744818 Cphy_3865 Clostridium phytofermentans ISDg hypothetical protein YP_001560951.1 4746361 R 357809 CDS YP_001560952.1 160881984 5744819 complement(4747182..4748348) 1 NC_010001.1 PFAM: beta-lactamase; KEGG: bay:RBAM_014410 MlnI; beta-lactamase 4748348 5744819 Cphy_3866 Clostridium phytofermentans ISDg beta-lactamase YP_001560952.1 4747182 R 357809 CDS YP_001560953.1 160881985 5744820 complement(4748822..4750540) 1 NC_010001.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cno:NT01CX_2117 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4750540 5744820 Cphy_3867 Clostridium phytofermentans ISDg methyl-accepting chemotaxis sensory transducer YP_001560953.1 4748822 R 357809 CDS YP_001560954.1 160881986 5744821 complement(4750732..4751193) 1 NC_010001.1 KEGG: fnu:FN1023 5-Nitroimidazole antibiotic resistance protein; 5-nitroimidazole antibiotic resistance protein 4751193 5744821 Cphy_3868 Clostridium phytofermentans ISDg 5-nitroimidazole antibiotic resistance protein YP_001560954.1 4750732 R 357809 CDS YP_001560955.1 160881987 5744822 complement(4751394..4755689) 1 NC_010001.1 PFAM: Fibronectin type III domain protein; KEGG: bha:BH0494 exopolygalacturonate lyase; fibronectin type III domain-containing protein 4755689 5744822 Cphy_3869 Clostridium phytofermentans ISDg fibronectin type III domain-containing protein YP_001560955.1 4751394 R 357809 CDS YP_001560956.1 160881988 5744823 complement(4756161..4757225) 1 NC_010001.1 KEGG: dsy:DSY1488 hypothetical protein; hypothetical protein 4757225 5744823 Cphy_3870 Clostridium phytofermentans ISDg hypothetical protein YP_001560956.1 4756161 R 357809 CDS YP_001560957.1 160881989 5744824 complement(4757422..4757670) 1 NC_010001.1 KEGG: cbe:Cbei_4440 hypothetical protein; hypothetical protein 4757670 5744824 Cphy_3871 Clostridium phytofermentans ISDg hypothetical protein YP_001560957.1 4757422 R 357809 CDS YP_001560958.1 160881990 5744825 complement(4757925..4758614) 1 NC_010001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC0321 response regulator (CheY-like domain, HTH domain); two component transcriptional regulator 4758614 5744825 Cphy_3872 Clostridium phytofermentans ISDg two component transcriptional regulator YP_001560958.1 4757925 R 357809 CDS YP_001560959.1 160881991 5744826 complement(4758773..4760314) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cac:CAC0317 sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4760314 5744826 Cphy_3873 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001560959.1 4758773 R 357809 CDS YP_001560960.1 160881992 5744827 complement(4760727..4761917) 1 NC_010001.1 PFAM: S-adenosylmethionine synthetase; KEGG: bpu:BPUM_2686 methionine adenosyltransferase; methionine adenosyltransferase 4761917 5744827 Cphy_3874 Clostridium phytofermentans ISDg methionine adenosyltransferase YP_001560960.1 4760727 R 357809 CDS YP_001560961.1 160881993 5744828 complement(4762298..4762492) 1 NC_010001.1 PFAM: Heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 4762492 5744828 Cphy_3875 Clostridium phytofermentans ISDg heavy metal transport/detoxification protein YP_001560961.1 4762298 R 357809 CDS YP_001560962.1 160881994 5744829 complement(4762599..4762910) 1 NC_010001.1 PFAM: protein of unknown function DUF156; KEGG: dsy:DSY2565 hypothetical protein; hypothetical protein 4762910 5744829 Cphy_3876 Clostridium phytofermentans ISDg hypothetical protein YP_001560962.1 4762599 R 357809 CDS YP_001560963.1 160881995 5744830 complement(4762911..4765193) 1 NC_010001.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY4510 hypothetical protein; copper-translocating P-type ATPase 4765193 5744830 Cphy_3877 Clostridium phytofermentans ISDg copper-translocating P-type ATPase YP_001560963.1 4762911 R 357809 CDS YP_001560964.1 160881996 5744831 4765822..4766910 1 NC_010001.1 KEGG: cth:Cthe_0898 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 4766910 5744831 Cphy_3878 Clostridium phytofermentans ISDg metal dependent phosphohydrolase YP_001560964.1 4765822 D 357809 CDS YP_001560965.1 160881997 5742276 complement(4767143..4768441) 1 NC_010001.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: csc:Csac_1198 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 4768441 5742276 Cphy_3879 Clostridium phytofermentans ISDg UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001560965.1 4767143 R 357809 CDS YP_001560966.1 160881998 5742277 complement(4768723..4769235) 1 NC_010001.1 PFAM: shikimate kinase; KEGG: mem:Memar_2255 shikimate kinase; shikimate kinase 4769235 5742277 Cphy_3880 Clostridium phytofermentans ISDg shikimate kinase YP_001560966.1 4768723 R 357809 CDS YP_001560967.1 160881999 5742278 complement(4769222..4769851) 1 NC_010001.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: bvu:BVU_3339 flavoredoxin; flavin reductase domain-containing protein 4769851 5742278 Cphy_3881 Clostridium phytofermentans ISDg flavin reductase domain-containing protein YP_001560967.1 4769222 R 357809 CDS YP_001560968.1 160882000 5742279 4770066..4770407 1 NC_010001.1 KEGG: ctc:CTC00234 cell wall hydrolase; hypothetical protein 4770407 5742279 Cphy_3882 Clostridium phytofermentans ISDg hypothetical protein YP_001560968.1 4770066 D 357809 CDS YP_001560969.1 160882001 5742280 complement(4770533..4772596) 1 NC_010001.1 KEGG: tva:TVAG_244940 viral A-type inclusion protein, Pfam: DUF2013 Spectrin DUF1945 EzrA Vicilin_N Myosin_tail_1 ATG16 HrpB7 Tektin DUF869 KAR9 Pox_A_type_inc Prefoldin_2 Rad50_zn_hook Hemerythrin Filament Microtub_assoc SF-assemblin Apolipoprotein MpPF2 BRE1 Phage_GP20 PROSITE: GLU_RICH; hypothetical protein 4772596 5742280 Cphy_3883 Clostridium phytofermentans ISDg hypothetical protein YP_001560969.1 4770533 R 357809 CDS YP_001560970.1 160882002 5742281 complement(4772764..4773486) 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC2932 ABC-type MDR transporter, ATPase component; ABC transporter 4773486 5742281 Cphy_3884 Clostridium phytofermentans ISDg ABC transporter YP_001560970.1 4772764 R 357809 CDS YP_001560971.1 160882003 5742282 complement(4773691..4775520) 1 NC_010001.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC01847 fumarate reductase flavoprotein subunit; flavocytochrome c 4775520 5742282 Cphy_3885 Clostridium phytofermentans ISDg flavocytochrome c YP_001560971.1 4773691 R 357809 CDS YP_001560972.1 160882004 5742283 4775742..4777484 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: ctc:CTC01848 two-component sensor kinase YesM; integral membrane sensor signal transduction histidine kinase 4777484 5742283 Cphy_3886 Clostridium phytofermentans ISDg integral membrane sensor signal transduction histidine kinase YP_001560972.1 4775742 D 357809 CDS YP_001560973.1 160882005 5742284 4777459..4778217 1 NC_010001.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: ctc:CTC01849 transcriptional regulatory protein; two component AraC family transcriptional regulator 4778217 5742284 Cphy_3887 Clostridium phytofermentans ISDg two component AraC family transcriptional regulator YP_001560973.1 4777459 D 357809 CDS YP_001560974.1 160882006 5742285 complement(4778508..4782932) 1 NC_010001.1 KEGG: cpr:CPR_0357 hypothetical protein; chromosome segregation ATPase-like protein 4782932 5742285 Cphy_3888 Clostridium phytofermentans ISDg chromosome segregation ATPase-like protein YP_001560974.1 4778508 R 357809 CDS YP_001560975.1 160882007 5742286 complement(4782919..4783659) 1 NC_010001.1 KEGG: cpr:CPR_0356 hypothetical protein; hypothetical protein 4783659 5742286 Cphy_3889 Clostridium phytofermentans ISDg hypothetical protein YP_001560975.1 4782919 R 357809 CDS YP_001560976.1 160882008 5742287 complement(4783831..4785378) 1 NC_010001.1 KEGG: bce:BC0947 hypothetical protein; hypothetical protein 4785378 5742287 Cphy_3890 Clostridium phytofermentans ISDg hypothetical protein YP_001560976.1 4783831 R 357809 CDS YP_001560977.1 160882009 5742288 complement(4785444..4787759) 1 NC_010001.1 PFAM: cyclic nucleotide-binding; KEGG: swo:Swol_0580 hypothetical protein; cyclic nucleotide-binding protein 4787759 5742288 Cphy_3891 Clostridium phytofermentans ISDg cyclic nucleotide-binding protein YP_001560977.1 4785444 R 357809 CDS YP_001560978.1 160882010 5742290 complement(4788544..4789905) 1 NC_010001.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cno:NT01CX_0361 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator 4789905 5742290 Cphy_3892 Clostridium phytofermentans ISDg cell envelope-related transcriptional attenuator YP_001560978.1 4788544 R 357809 CDS YP_001560979.1 160882011 5742291 4790255..4790740 1 NC_010001.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bha:BH0033 Cu binding protein (Mn oxidation); zinc-binding CMP/dCMP deaminase 4790740 5742291 Cphy_3893 Clostridium phytofermentans ISDg zinc-binding CMP/dCMP deaminase YP_001560979.1 4790255 D 357809 CDS YP_001560980.1 160882012 5742292 4790737..4791435 1 NC_010001.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: amt:Amet_1388 anaerobic ribonucleoside-triphosphate reductase activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein 4791435 5742292 Cphy_3894 Clostridium phytofermentans ISDg anaerobic ribonucleoside-triphosphate reductase activating protein YP_001560980.1 4790737 D 357809 CDS YP_001560981.1 160882013 5742293 4791616..4792167 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bca:BCE_4217 ribosomal-protein-alanine acetyltransferase; N-acetyltransferase GCN5 4792167 5742293 Cphy_3895 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001560981.1 4791616 D 357809 CDS YP_001560982.1 160882014 5742294 complement(4792329..4793756) 1 NC_010001.1 KEGG: tva:TVAG_244940 viral A-type inclusion protein, Pfam: DUF2013 Spectrin DUF1945 EzrA Vicilin_N Myosin_tail_1 ATG16 HrpB7 Tektin DUF869 KAR9 Pox_A_type_inc Prefoldin_2 Rad50_zn_hook Hemerythrin Filament Microtub_assoc SF-assemblin Apolipoprotein MpPF2 BRE1 Phage_GP20 PROSITE: GLU_RICH; hypothetical protein 4793756 5742294 Cphy_3896 Clostridium phytofermentans ISDg hypothetical protein YP_001560982.1 4792329 R 357809 CDS YP_001560983.1 160882015 5742295 4794020..4795861 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD1405 ABC transporter, ATP-binding protein; ABC transporter 4795861 5742295 Cphy_3897 Clostridium phytofermentans ISDg ABC transporter YP_001560983.1 4794020 D 357809 CDS YP_001560984.1 160882016 5742296 complement(4796148..4797032) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC3648 acetyltransferase (with duplicated domains), possibly RimI-like protein; N-acetyltransferase GCN5 4797032 5742296 Cphy_3898 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001560984.1 4796148 R 357809 CDS YP_001560985.1 160882017 5742297 complement(4797062..4797934) 1 NC_010001.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: amt:Amet_0138 dimethyladenosine transferase; dimethyladenosine transferase 4797934 5742297 Cphy_3899 Clostridium phytofermentans ISDg dimethyladenosine transferase YP_001560985.1 4797062 R 357809 CDS YP_001560986.1 160882018 5742298 complement(4798055..4798843) 1 NC_010001.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: cno:NT01CX_0686 hydrolase, TatD family; TatD family hydrolase 4798843 5742298 Cphy_3900 Clostridium phytofermentans ISDg TatD family hydrolase YP_001560986.1 4798055 R 357809 CDS YP_001560987.1 160882019 5742299 complement(4798910..4799812) 1 NC_010001.1 KEGG: cbf:CLI_1758 fructose-1-phosphate kinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 4799812 5742299 Cphy_3901 Clostridium phytofermentans ISDg 1-phosphofructokinase YP_001560987.1 4798910 R 357809 CDS YP_001560988.1 160882020 5742300 complement(4799919..4800206) 1 NC_010001.1 hypothetical protein 4800206 5742300 Cphy_3902 Clostridium phytofermentans ISDg hypothetical protein YP_001560988.1 4799919 R 357809 CDS YP_001560989.1 160882021 5742301 4800593..4800967 1 NC_010001.1 PFAM: regulatory protein GntR HTH; KEGG: ckl:CKL_0385 transcriptional regulator; GntR family transcriptional regulator 4800967 5742301 Cphy_3903 Clostridium phytofermentans ISDg GntR family transcriptional regulator YP_001560989.1 4800593 D 357809 CDS YP_001560990.1 160882022 5742302 4800970..4801848 1 NC_010001.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_0384 predicted ABC transporter, ATPase component; ABC transporter 4801848 5742302 Cphy_3904 Clostridium phytofermentans ISDg ABC transporter YP_001560990.1 4800970 D 357809 CDS YP_001560991.1 160882023 5742303 4801932..4802546 1 NC_010001.1 KEGG: ckl:CKL_0383 predicted transporter protein; transporter protein 4802546 5742303 Cphy_3905 Clostridium phytofermentans ISDg transporter protein YP_001560991.1 4801932 D 357809 CDS YP_001560992.1 160882024 5742304 4802885..4804489 1 NC_010001.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: ckl:CKL_0307 Pts1; phosphoenolpyruvate-protein phosphotransferase 4804489 5742304 Cphy_3906 Clostridium phytofermentans ISDg phosphoenolpyruvate-protein phosphotransferase YP_001560992.1 4802885 D 357809 CDS YP_001560993.1 160882025 5742305 complement(4804493..4805017) 1 NC_010001.1 PFAM: nucleoside recognition domain protein; KEGG: cth:Cthe_2098 nucleoside recognition; nucleoside recognition domain-containing protein 4805017 5742305 Cphy_3907 Clostridium phytofermentans ISDg nucleoside recognition domain-containing protein YP_001560993.1 4804493 R 357809 CDS YP_001560994.1 160882026 5742306 complement(4805102..4805692) 1 NC_010001.1 KEGG: bha:BH1574 spore maturation protein; spore maturation protein 4805692 5742306 Cphy_3908 Clostridium phytofermentans ISDg spore maturation protein YP_001560994.1 4805102 R 357809 CDS YP_001560995.1 160882027 5742307 4806279..4806536 1 NC_010001.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: swo:Swol_0047 transcription regulator AbrB; AbrB family transcriptional regulator 4806536 5742307 Cphy_3909 Clostridium phytofermentans ISDg AbrB family transcriptional regulator YP_001560995.1 4806279 D 357809 CDS YP_001560996.1 160882028 5742308 complement(4806775..4807620) 1 NC_010001.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cth:Cthe_2101 protein of unknown function UPF0011; uroporphyrin-III C/tetrapyrrole methyltransferase 4807620 5742308 Cphy_3910 Clostridium phytofermentans ISDg uroporphyrin-III C/tetrapyrrole methyltransferase YP_001560996.1 4806775 R 357809 CDS YP_001560997.1 160882029 5742309 complement(4807645..4808415) 1 NC_010001.1 PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: amt:Amet_0090 methyltransferase small; methyltransferase type 11 4808415 5742309 Cphy_3911 Clostridium phytofermentans ISDg methyltransferase type 11 YP_001560997.1 4807645 R 357809 CDS YP_001560998.1 160882030 5742310 complement(4808408..4809310) 1 NC_010001.1 PFAM: PSP1 domain protein; KEGG: ckl:CKL_3792 predicted peptidase; PSP1 domain-containing protein 4809310 5742310 Cphy_3912 Clostridium phytofermentans ISDg PSP1 domain-containing protein YP_001560998.1 4808408 R 357809 CDS YP_001560999.1 160882031 5742311 complement(4809407..4810399) 1 NC_010001.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: amt:Amet_0084 DNA polymerase III, delta prime subunit; DNA polymerase III, delta prime subunit 4810399 5742311 Cphy_3913 Clostridium phytofermentans ISDg DNA polymerase III, delta prime subunit YP_001560999.1 4809407 R 357809 CDS YP_001561000.1 160882032 5742312 complement(4810421..4810861) 1 NC_010001.1 PFAM: protein of unknown function DUF327; KEGG: cth:Cthe_2106 protein of unknown function DUF327; hypothetical protein 4810861 5742312 Cphy_3914 Clostridium phytofermentans ISDg hypothetical protein YP_001561000.1 4810421 R 357809 CDS YP_001561001.1 160882033 5742313 complement(4811136..4811726) 1 NC_010001.1 SMART: guanylate kinase/L-type calcium channel region; KEGG: cpr:CPR_2447 guanylate kinase-like protein; guanylate kinase 4811726 5742313 Cphy_3915 Clostridium phytofermentans ISDg guanylate kinase YP_001561001.1 4811136 R 357809 CDS YP_001561002.1 160882034 5742314 complement(4811719..4813158) 1 NC_010001.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: amt:Amet_0081 Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase major region 4813158 5742314 Cphy_3916 Clostridium phytofermentans ISDg Orn/Lys/Arg decarboxylase major region YP_001561002.1 4811719 R 357809 CDS YP_001561003.1 160882035 5742048 4813411..4814055 1 NC_010001.1 KEGG: bld:BLi03141 similar to proteins; RBL00993; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 4814055 5742048 Cphy_3917 Clostridium phytofermentans ISDg tRNA (guanine-N(7)-)-methyltransferase YP_001561003.1 4813411 D 357809 CDS YP_001561004.1 160882036 5742042 4814152..4814424 1 NC_010001.1 KEGG: mgr:MGG_04749 predicted protein; hypothetical protein 4814424 5742042 Cphy_3918 Clostridium phytofermentans ISDg hypothetical protein YP_001561004.1 4814152 D 357809 CDS YP_001561005.1 160882037 5742043 4814554..4814865 1 NC_010001.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: sat:SYN_00045 thioredoxin; thioredoxin 4814865 5742043 Cphy_3919 Clostridium phytofermentans ISDg thioredoxin YP_001561005.1 4814554 D 357809 CDS YP_001561006.1 160882038 5742044 complement(4814910..4816214) 1 NC_010001.1 PFAM: protein of unknown function UPF0118; KEGG: amt:Amet_4632 protein of unknown function UPF0118; hypothetical protein 4816214 5742044 Cphy_3920 Clostridium phytofermentans ISDg hypothetical protein YP_001561006.1 4814910 R 357809 CDS YP_001561007.1 160882039 5742047 complement(4817058..4818356) 1 NC_010001.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: dsy:DSY4185 hypothetical protein; DNA-directed DNA polymerase 4818356 5742047 Cphy_3921 Clostridium phytofermentans ISDg DNA-directed DNA polymerase YP_001561007.1 4817058 R 357809 CDS YP_001561008.1 160882040 5744698 complement(4818485..4819669) 1 NC_010001.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: ckl:CKL_1659 predicted transposase; IS605 family transposase OrfB 4819669 5744698 Cphy_3922 Clostridium phytofermentans ISDg IS605 family transposase OrfB YP_001561008.1 4818485 R 357809 CDS YP_001561009.1 160882041 5744699 complement(4819905..4820171) 1 NC_010001.1 hypothetical protein 4820171 5744699 Cphy_3923 Clostridium phytofermentans ISDg hypothetical protein YP_001561009.1 4819905 R 357809 CDS YP_001561010.1 160882042 5744700 4820802..4821464 1 NC_010001.1 PFAM: protein of unknown function DUF159; KEGG: csc:Csac_0196 protein of unknown function DUF159; hypothetical protein 4821464 5744700 Cphy_3924 Clostridium phytofermentans ISDg hypothetical protein YP_001561010.1 4820802 D 357809 CDS YP_001561011.1 160882043 5744701 4821675..4824293 1 NC_010001.1 PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase_; KEGG: cth:Cthe_0423 iron-containing alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 4824293 5744701 Cphy_3925 Clostridium phytofermentans ISDg bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_001561011.1 4821675 D 357809 CDS YP_001561012.1 160882044 5744702 complement(4824573..4825388) 1 NC_010001.1 PFAM: ABC transporter related; KEGG: bay:RBAM_009350 YhcH; ABC transporter 4825388 5744702 Cphy_3926 Clostridium phytofermentans ISDg ABC transporter YP_001561012.1 4824573 R 357809 CDS YP_001561013.1 160882045 5744703 complement(4825740..4826486) 1 NC_010001.1 PFAM: aminoglycoside phosphotransferase; KEGG: cth:Cthe_0424 aminoglycoside phosphotransferase; Mn2+-dependent serine/threonine protein kinase 4826486 5744703 Cphy_3927 Clostridium phytofermentans ISDg Mn2+-dependent serine/threonine protein kinase YP_001561013.1 4825740 R 357809 CDS YP_001561014.1 160882046 5744704 4826781..4827503 1 NC_010001.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 4827503 araD 5744704 araD Clostridium phytofermentans ISDg L-ribulose-5-phosphate 4-epimerase YP_001561014.1 4826781 D 357809 CDS YP_001561015.1 160882047 5744679 4827725..4829275 1 NC_010001.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: tte:TTE0925 D-alanyl-D-alanine carboxypeptidase; Serine-type D-Ala-D-Ala carboxypeptidase 4829275 5744679 Cphy_3929 Clostridium phytofermentans ISDg Serine-type D-Ala-D-Ala carboxypeptidase YP_001561015.1 4827725 D 357809 CDS YP_001561016.1 160882048 5744680 complement(4829441..4830136) 1 NC_010001.1 hypothetical protein 4830136 5744680 Cphy_3930 Clostridium phytofermentans ISDg hypothetical protein YP_001561016.1 4829441 R 357809 CDS YP_001561017.1 160882049 5744682 complement(4830637..4831512) 1 NC_010001.1 hypothetical protein 4831512 5744682 Cphy_3931 Clostridium phytofermentans ISDg hypothetical protein YP_001561017.1 4830637 R 357809 CDS YP_001561018.1 160882050 5744683 complement(4831633..4832715) 1 NC_010001.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: cbe:Cbei_2514 metal dependent phosphohydrolase; metal dependent phosphohydrolase 4832715 5744683 Cphy_3932 Clostridium phytofermentans ISDg metal dependent phosphohydrolase YP_001561018.1 4831633 R 357809 CDS YP_001561019.1 160882051 5744684 complement(4832859..4833371) 1 NC_010001.1 KEGG: cbf:CLI_3882 hypothetical protein; hypothetical protein 4833371 5744684 Cphy_3933 Clostridium phytofermentans ISDg hypothetical protein YP_001561019.1 4832859 R 357809 CDS YP_001561020.1 160882052 5744685 complement(4833440..4834327) 1 NC_010001.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cbh:CLC_3637 stage 0 sporulation protein J; parB-like partition protein 4834327 5744685 Cphy_3934 Clostridium phytofermentans ISDg parB-like partition protein YP_001561020.1 4833440 R 357809 CDS YP_001561021.1 160882053 5744686 complement(4834330..4835184) 1 NC_010001.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: tte:TTE2791 ATPases involved in chromosome partitioning; cobyrinic acid ac-diamide synthase 4835184 5744686 Cphy_3935 Clostridium phytofermentans ISDg cobyrinic acid ac-diamide synthase YP_001561021.1 4834330 R 357809 CDS YP_001561022.1 160882054 5744687 complement(4836601..4837242) 1 NC_010001.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: cth:Cthe_1267 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 4837242 5744687 Cphy_3936 Clostridium phytofermentans ISDg two component LuxR family transcriptional regulator YP_001561022.1 4836601 R 357809 CDS YP_001561023.1 160882055 5744688 complement(4837246..4838346) 1 NC_010001.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: cth:Cthe_1268 histidine kinase; histidine kinase 4838346 5744688 Cphy_3937 Clostridium phytofermentans ISDg histidine kinase YP_001561023.1 4837246 R 357809 CDS YP_001561024.1 160882056 5744689 complement(4838447..4838935) 1 NC_010001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tpt:Tpet_1016 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4838935 5744689 Cphy_3938 Clostridium phytofermentans ISDg N-acetyltransferase GCN5 YP_001561024.1 4838447 R 357809 CDS YP_001561025.1 160882057 5744690 complement(4839020..4839748) 1 NC_010001.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: cth:Cthe_2363 methyltransferase GidB; methyltransferase GidB 4839748 5744690 Cphy_3939 Clostridium phytofermentans ISDg methyltransferase GidB YP_001561025.1 4839020 R 357809 CDS YP_001561026.1 160882058 5744691 complement(4840022..4841905) 1 NC_010001.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 4841905 5744691 Cphy_3940 Clostridium phytofermentans ISDg tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001561026.1 4840022 R 357809 CDS YP_001561027.1 160882059 5744692 complement(4841935..4843311) 1 NC_010001.1 TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: ctc:CTC00098 thiophene and furan oxidation protein thdF; tRNA modification GTPase TrmE 4843311 5744692 Cphy_3941 Clostridium phytofermentans ISDg tRNA modification GTPase TrmE YP_001561027.1 4841935 R 357809 CDS YP_001561028.1 160882060 5744693 complement(4843609..4844439) 1 NC_010001.1 PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: cbh:CLC_3643 jag protein; single-stranded nucleic acid binding R3H domain-containing protein 4844439 5744693 Cphy_3942 Clostridium phytofermentans ISDg single-stranded nucleic acid binding R3H domain-containing protein YP_001561028.1 4843609 R 357809 CDS YP_001561029.1 160882061 5744694 complement(4844439..4845767) 1 NC_010001.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: ckl:CKL_3476 hypothetical protein; hypothetical protein 4845767 5744694 Cphy_3943 Clostridium phytofermentans ISDg hypothetical protein YP_001561029.1 4844439 R 357809 CDS YP_001561030.1 160882062 5744695 complement(4845820..4846032) 1 NC_010001.1 PFAM: protein of unknown function DUF37; KEGG: sth:STH3339 alpha-hemolysin; hypothetical protein 4846032 5744695 Cphy_3944 Clostridium phytofermentans ISDg hypothetical protein YP_001561030.1 4845820 R 357809 CDS YP_001561031.1 160882063 5744696 complement(4846164..4846514) 1 NC_010001.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4846514 rnpA 5744696 rnpA Clostridium phytofermentans ISDg ribonuclease P YP_001561031.1 4846164 R 357809 CDS YP_001561032.1 160882064 5744697 complement(4846747..4846881) 1 NC_010001.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4846881 rpmH 5744697 rpmH Clostridium phytofermentans ISDg 50S ribosomal protein L34 YP_001561032.1 4846747 R 357809 CDS