-- dump date 20140619_044852 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 195102000001 SEQ_END SEQ_END NC_003042.1 54310 54310 DR NC_003042.1; contig end 54310..54310 Clostridium perfringens str. 13 195102000002 SEQ_END SEQ_END NC_003366.1 3031430 3031430 DR NC_003366.1; contig end 3031430..3031430 Clostridium perfringens str. 13 NP_149993.1 CDS soj NC_003042.1 940 1692 D 250 aa, similar to pir:I40444 Spo0A activation inhibitor soj from Bacillus subtilis (253 aa); 37% identity in 250 aa overlap; ParA family; Soj protein 940..1692 Clostridium perfringens str. 13 2559788 NP_149994.1 CDS parB NC_003042.1 1751 3031 D 426 aa, similar to gpu:AF300944_3 presumptive ParB protein from Lactococcus lactis subsplactis (242 aa); 30% identity in 266 aa overlap; ParB protein 1751..3031 Clostridium perfringens str. 13 2559844 NP_149995.1 CDS PCP03 NC_003042.1 3147 3509 D 120 aa, no significant homology; hypothetical protein 3147..3509 Clostridium perfringens str. 13 2559822 NP_149997.1 CDS PCP04 NC_003042.1 3773 4024 D 83 aa, similar to pir:T14710 probable transposase from Yersinia pestis (402 aa); 44% identity in 50 aa overlap; truncated; transposase 3773..4024 Clostridium perfringens str. 13 2559795 NP_149998.1 CDS PCP05 NC_003042.1 4040 4222 D 60 aa, similar to gp:AF143819_1 transposase-like protein from Escherichia coli (402 aa); 38% identity in 60 aa overlap; truncated; transposase 4040..4222 Clostridium perfringens str. 13 2559827 NP_149999.1 CDS PCP06 NC_003042.1 4588 4746 D 52 aa, similar to pir:T43600 probable transposase from Yersinia pestis (105 aa); 56% identity in 50 aa overlap; truncated; transposase 4588..4746 Clostridium perfringens str. 13 2559839 NP_150000.1 CDS PCP07 NC_003042.1 5169 5804 R 211 aa, similar to gp:AP001508_4 ABC transporter (ATP-binding protein) from Bacillus halodurans (213 aa); 49% identity in 214 aa overlap; ABC transporter complement(5169..5804) Clostridium perfringens str. 13 2559818 NP_150001.1 CDS PCP08 NC_003042.1 5804 7966 R 720 aa, similar to gp:AP001508_3 BH0280 gene product from Bacillus halodurans (713 aa); 23% identity in 661 aa overlap; hypothetical protein complement(5804..7966) Clostridium perfringens str. 13 2559796 NP_150002.1 CDS PCP09 NC_003042.1 8043 8354 R 103 aa, no significant homology; hypothetical protein complement(8043..8354) Clostridium perfringens str. 13 2559797 NP_150003.1 CDS PCP10 NC_003042.1 8779 9012 D 77 aa, similar to probable transposase from Yersinia pestis plasmid pMT1 (402 aa); 25% identity in 158 aa overlap; truncated; transposase 8779..9012 Clostridium perfringens str. 13 2559798 NP_150004.1 CDS PCP11 NC_003042.1 9127 9366 D 79 aa, similar to probable transposase from Yersinia pestis (99 aa); 46% identity in 73 aa overlap; transposase 9127..9366 Clostridium perfringens str. 13 2559824 NP_150005.1 CDS PCP12 NC_003042.1 9488 9973 R 161 aa, similar to sp:YPI6_CLOPE HYPOTHETICAL 19.7 KDA PROTEIN (ORF6) from Clostridium perfringens plasmid pIP404 (166 aa); 25% identity in 156 aa overlap; plasmid-related; hypothetical protein complement(9488..9973) Clostridium perfringens str. 13 2559799 NP_150006.1 CDS PCP13 NC_003042.1 10102 10281 R 59 aa, no significant homology; hypothetical protein complement(10102..10281) Clostridium perfringens str. 13 2559800 NP_150007.1 CDS PCP14 NC_003042.1 10439 11113 D 224 aa, similar to gp:AP001517_204 BH3082 gene product from Bacillus halodurans (211 aa); 25% identity in 196 aa overlap; hypothetical protein 10439..11113 Clostridium perfringens str. 13 2559801 NP_150008.1 CDS resP NC_003042.1 11317 11886 D 189 aa, similar to sp:RESP_CLOPE RESOLVASE (ORF8) from Clostridium perfringens plasmid pIP404 (189 aa); 92% identity in 174 aa overlap; resolvase 11317..11886 Clostridium perfringens str. 13 2559791 NP_150009.1 CDS PCP16 NC_003042.1 12101 13366 D 421 aa, no significant homology; hypothetical protein 12101..13366 Clostridium perfringens str. 13 2559802 NP_150010.1 CDS cpb2 NC_003042.1 13654 14451 D 265 aa, similar to pir:JC6515 beta 2 toxin from Clostridium perfringens (265 aa); 91% identity in 265 aa overlap; beta2-toxin 13654..14451 Clostridium perfringens str. 13 2559792 NP_150011.1 CDS PCP18 NC_003042.1 14479 15123 R 214 aa, no significant homology; hypothetical protein complement(14479..15123) Clostridium perfringens str. 13 2559803 NP_150012.1 CDS PCP19 NC_003042.1 15135 15449 R 104 aa, similar to pir:B75335 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (107 aa); 39% identity in 101 aa overlap; hypothetical protein complement(15135..15449) Clostridium perfringens str. 13 2559804 NP_150013.1 CDS PCP20 NC_003042.1 16008 16232 D 74 aa, no significant homology; hypothetical protein 16008..16232 Clostridium perfringens str. 13 2559805 NP_150014.1 CDS radC NC_003042.1 16323 16760 D 145 aa, similar to prf:2605291A RadC protein from Bacillus sp. (119 aa); 54% identity in 119 aa overlap; DNA repair protein RadC 16323..16760 Clostridium perfringens str. 13 2559843 NP_150015.1 CDS PCP22 NC_003042.1 16820 17137 D 105 aa, partially similar to gp:AF225463_1 SpoIIGB from Clostridium bifermentans (107 aa); 34% identity in 73 aa overlap; hypothetical protein 16820..17137 Clostridium perfringens str. 13 2559817 NP_150016.1 CDS PCP23 NC_003042.1 17161 17484 D 107 aa, no significant homology; hypothetical protein 17161..17484 Clostridium perfringens str. 13 2559806 NP_150017.1 CDS PCP24 NC_003042.1 17739 17942 D 67 aa, no significant homology; hypothetical protein 17739..17942 Clostridium perfringens str. 13 2559807 NP_150018.1 CDS PCP25 NC_003042.1 18016 18405 D 129 aa, no significant homology; hypothetical protein 18016..18405 Clostridium perfringens str. 13 2559783 NP_150019.1 CDS PCP26 NC_003042.1 18575 19642 D 355 aa, no significant homology; hypothetical protein 18575..19642 Clostridium perfringens str. 13 2559784 NP_150020.1 CDS PCP27 NC_003042.1 19722 19919 D 65 aa, similar to pir:S75025 hypothetical protein slr1999 from Synechocystis sp. (strain PCC 6803) (136 aa); 45% identity in 53 aa overlap; hypothetical protein 19722..19919 Clostridium perfringens str. 13 2559785 NP_150021.1 CDS PCP28 NC_003042.1 19969 20385 D 138 aa, similar to pir:T13557 hypothetical protein 17 from Bacillus phage phi-105 (138 aa); 48% identity in 134 aa overlap; phage-related; hypothetical protein 19969..20385 Clostridium perfringens str. 13 2559786 NP_150022.1 CDS PCP29 NC_003042.1 20737 21495 D 252 aa, no significant homology; hypothetical protein 20737..21495 Clostridium perfringens str. 13 2559787 NP_150023.1 CDS PCP30 NC_003042.1 21612 22625 D 337 aa, similar to gp:AP001508_32 BH0309 gene product from Bacillus halodurans (338 aa); 23% identity in 343 aa overlap; hypothetical protein 21612..22625 Clostridium perfringens str. 13 2559782 NP_150024.1 CDS PCP31 NC_003042.1 22653 23123 D 156 aa, no significant homology; hypothetical protein 22653..23123 Clostridium perfringens str. 13 2559809 NP_150025.1 CDS PCP32 NC_003042.1 23328 23513 D 61 aa, similar to gp:AF179847_5 putative resolvase from Lactococcus lactis (199 aa); 38% identity in 65 aa overlap; truncated; resolvase 23328..23513 Clostridium perfringens str. 13 2559808 NP_150026.1 CDS PCP33 NC_003042.1 23553 23795 D 80 aa, no significant homology; hypothetical protein 23553..23795 Clostridium perfringens str. 13 2559810 NP_150027.1 CDS PCP34 NC_003042.1 24051 24548 R 165 aa, no significant homology; hypothetical protein complement(24051..24548) Clostridium perfringens str. 13 2559811 NP_150028.1 CDS PCP35 NC_003042.1 24604 25965 R 453 aa, partially similar to sp:PRIM_CLOAB DNA PRIMASE (EC 2.7.7.-) from Clostridium acetobutyricum (596 aa); 21% identity in 402 aa overlap; hypothetical protein complement(24604..25965) Clostridium perfringens str. 13 2559812 NP_150029.1 CDS PCP36 NC_003042.1 25943 27403 R 486 aa, similar to gp:AF188935_80 pXO2-81 from Bacillus anthracis (589 aa); 28% identity in 500 aa overlap; plasmid-related; hypothetical protein complement(25943..27403) Clostridium perfringens str. 13 2559813 NP_150030.1 CDS PCP37 NC_003042.1 27506 27670 R 54 aa, no significant homology; hypothetical protein complement(27506..27670) Clostridium perfringens str. 13 2559814 NP_150031.1 CDS PCP38 NC_003042.1 27747 27965 R 72 aa, no significant homology; hypothetical protein complement(27747..27965) Clostridium perfringens str. 13 2559829 NP_150032.1 CDS PCP39 NC_003042.1 27983 29116 R 377 aa, similar to gp:AF188935_83 pXO2-84 from Bacillus anthracis (490 aa); 31% identity in 421 aa overlap; plasmid-related; hypothetical protein complement(27983..29116) Clostridium perfringens str. 13 2559815 NP_150033.1 CDS PCP40 NC_003042.1 29119 29526 R 135 aa, no significant homology; hypothetical protein complement(29119..29526) Clostridium perfringens str. 13 2559833 NP_150034.1 CDS PCP41 NC_003042.1 29533 29799 R 88 aa, no significant homology; hypothetical protein complement(29533..29799) Clostridium perfringens str. 13 2559820 NP_150035.1 CDS PCP42 NC_003042.1 29800 30003 R 67 aa, no significant homology; hypothetical protein complement(29800..30003) Clostridium perfringens str. 13 2559819 NP_150036.1 CDS PCP43 NC_003042.1 30127 31041 R 304 aa, similar to gp:AF188935_5 pXO2-05 from Bacillus anthracis (282 aa); 25% identity in 227 aa overlap; plasmid-related; hypothetical protein complement(30127..31041) Clostridium perfringens str. 13 2559816 NP_150037.1 CDS PCP44 NC_003042.1 31168 32331 R 387 aa, similar to pir:F70031 cell wall-binding protein homolog yvcE from Bacillus subtilis (473 aa); 47% identity in 168 aa overlap; cell wall-binding protein complement(31168..32331) Clostridium perfringens str. 13 2559831 NP_150038.1 CDS PCP45 NC_003042.1 32417 33106 R 229 aa, no significant homology; hypothetical protein complement(32417..33106) Clostridium perfringens str. 13 2559821 NP_150039.1 CDS PCP46 NC_003042.1 33111 35009 R 632 aa, similar to gp:AF188935_9 pXO2.09 from Bacillus anthracis (643 aa); 33% identity in 640 aa overlap; plasmid-related; hypothetical protein complement(33111..35009) Clostridium perfringens str. 13 2559836 NP_150040.1 CDS topA NC_003042.1 35027 37138 R 703 aa, similar to gp:AF007787_9 type I topoisomerase from Enterococcus faecalis (714 aa); 31% identity in 742 aa overlap; type I topoisomease complement(35027..37138) Clostridium perfringens str. 13 2559826 NP_150041.1 CDS PCP48 NC_003042.1 37182 37826 R 214 aa, similar to gp:AF188935_10 pXO2-10 from Bacillus anthracis (222 aa); 23% identity in 222 aa overlap; plasmid-related; hypothetical protein complement(37182..37826) Clostridium perfringens str. 13 2559828 NP_150042.1 CDS PCP49 NC_003042.1 37937 38218 R 93 aa, no significant homology; hypothetical protein complement(37937..38218) Clostridium perfringens str. 13 2559835 NP_150043.1 CDS PCP50 NC_003042.1 38221 40350 R 709 aa, similar to gp:AF188935_14 pXO2-14 from Bacillus anthracis (952 aa); 21% identity in 798 aa overlap; plasmid-related; hypothetical protein complement(38221..40350) Clostridium perfringens str. 13 2559789 NP_150044.1 CDS PCP51 NC_003042.1 40347 43088 R 913 aa, similar to gp:AF188935_16 pXO2-16 from Bacillus anthracis (611 aa); 35% identity in 650 aa overlap; plasmid-related; hypothetical protein complement(40347..43088) Clostridium perfringens str. 13 2559790 NP_150045.1 CDS PCP52 NC_003042.1 43075 43287 R 70 aa, no significant homology; hypothetical protein complement(43075..43287) Clostridium perfringens str. 13 2559834 NP_150046.1 CDS PCP53 NC_003042.1 43355 43591 R 78 aa, no significant homology; hypothetical protein complement(43355..43591) Clostridium perfringens str. 13 2559832 NP_150047.1 CDS PCP54 NC_003042.1 43655 43849 R 64 aa, no significant homology; hypothetical protein complement(43655..43849) Clostridium perfringens str. 13 2559837 NP_150048.1 CDS PCP55 NC_003042.1 43842 44300 R 152 aa, partially similar to gp:CBE288947_2 Spo0A protein from Clostridium beijerinckii (273 aa); 28% identity in 112 aa overlap; Spo0A-like protein complement(43842..44300) Clostridium perfringens str. 13 2559838 NP_150049.1 CDS PCP56 NC_003042.1 44413 45009 R 198 aa, similar to gp:AP001514_133 BH2127 gene product from Bacillus halodurans (194 aa); 29% identity in 174 aa overlap; hypothetical protein complement(44413..45009) Clostridium perfringens str. 13 2559842 NP_150050.1 CDS cna NC_003042.1 45255 49361 R 1368 aa, similar to gp:AP001514_20 BH2014 gene product from Bacillus halodurans (1816 aa); 30% identity in 718 aa overlap. Also similar to pir:A42404 collagen adhesin from Staphylococcus aureus (1185 aa); 23% identity in 813 aa overlap; collagen adhesin complement(45255..49361) Clostridium perfringens str. 13 2559840 NP_150051.1 CDS PCP58 NC_003042.1 49506 49856 R 116 aa, similar to gp:SASIGFACB_1 ORF1 gene product from Staphylococcus aureus (120 aa); 41% identity in 112 aa overlap; hypothetical protein complement(49506..49856) Clostridium perfringens str. 13 2559825 NP_150052.1 CDS PCP59 NC_003042.1 49980 51053 R 357 aa, similar to pir:A81049 TonB protein NMB1730 from Neisseria meningitidis (280 aa); 38% identity in 120 aa overlap; hypothetical protein complement(49980..51053) Clostridium perfringens str. 13 2559830 NP_150053.1 CDS PCP60 NC_003042.1 51099 51584 R 161 aa, no significant homology; hypothetical protein complement(51099..51584) Clostridium perfringens str. 13 2559823 NP_150054.1 CDS PCP61 NC_003042.1 51897 53000 D 367 aa, similar to pir:D69944 transcription regulator phage-related homolog yqaE from Bacillus subtilis (116 aa); 37% identity in 109 aa overlap; transcription regulator phage-related 51897..53000 Clostridium perfringens str. 13 2559794 NP_150055.1 CDS PCP62 NC_003042.1 53114 53560 R 148 aa, no significant homology; hypothetical protein complement(53114..53560) Clostridium perfringens str. 13 2559793 NP_150056.1 CDS PCP63 NC_003042.1 53589 54239 R 216 aa, no significant homology; hypothetical protein complement(53589..54239) Clostridium perfringens str. 13 2559841 NP_560917.1 CDS dnaA NC_003366.1 410 1783 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 410..1783 Clostridium perfringens str. 13 988245 NP_560918.1 CDS dnaN NC_003366.1 2078 3178 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2078..3178 Clostridium perfringens str. 13 988244 NP_560919.1 CDS CPE0003 NC_003366.1 3304 3510 D similar to pir|H75402 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (104 aa); % identity in 57 aa overlap; S4 domain-containing protein 3304..3510 Clostridium perfringens str. 13 988241 NP_560920.1 CDS recF NC_003366.1 3566 4651 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3566..4651 Clostridium perfringens str. 13 988243 NP_560921.1 CDS CPE0005 NC_003366.1 4665 4925 D similar to pir:T46554 hypothetical protein X from Clostridium acetobutylicum (87 aa); 78.6% identity in 84 aa overlap; hypothetical protein 4665..4925 Clostridium perfringens str. 13 988242 NP_560922.1 CDS gyrB NC_003366.1 5162 7078 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 5162..7078 Clostridium perfringens str. 13 988246 NP_560923.1 CDS gyrA NC_003366.1 7100 9391 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 7100..9391 Clostridium perfringens str. 13 988235 NP_560924.1 CDS CPE0008 NC_003366.1 9369 9620 D no significant homology.; hypothetical protein 9369..9620 Clostridium perfringens str. 13 988237 NP_560925.1 CDS CPE0009 NC_003366.1 15422 15625 D no significant homology.; hypothetical protein 15422..15625 Clostridium perfringens str. 13 988248 NP_560926.1 CDS CPE0010 NC_003366.1 15633 15926 D no significant homology. ATT start; hypothetical protein 15633..15926 Clostridium perfringens str. 13 988249 NP_560927.1 CDS CPE0011 NC_003366.1 16277 19033 D similar to pir:D69427 conserved hypothetical protein AF1421 from Archaeoglobus fulgidus (880 aa); 31.7% identity in 881 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; hypothetical protein 16277..19033 Clostridium perfringens str. 13 988250 NP_560928.1 CDS CPE0012 NC_003366.1 19276 20670 D similar to pir:E72254 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (479 aa); 31.4% identity in 455 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 19276..20670 Clostridium perfringens str. 13 988251 NP_560929.1 CDS CPE0013 NC_003366.1 20683 20916 D no significant homology.; hypothetical protein 20683..20916 Clostridium perfringens str. 13 988252 NP_560930.2 CDS serS NC_003366.1 21268 22545 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 21268..22545 Clostridium perfringens str. 13 988253 NP_560931.1 CDS CPE0015 NC_003366.1 22722 23141 D no significant homology.; hypothetical protein 22722..23141 Clostridium perfringens str. 13 988234 NP_560932.1 CDS CPE0016 NC_003366.1 23757 24023 D no significant homology. 2 transmembrane regions were found by PSORT.; hypothetical protein 23757..24023 Clostridium perfringens str. 13 988231 NP_560933.1 CDS CPE0017 NC_003366.1 24353 24535 R no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein complement(24353..24535) Clostridium perfringens str. 13 988228 NP_560934.1 CDS CPE0018 NC_003366.1 24773 25654 D no significant homology.; hypothetical protein 24773..25654 Clostridium perfringens str. 13 988227 NP_560935.1 CDS CPE0019 NC_003366.1 25743 25907 R no significant homology.; hypothetical protein complement(25743..25907) Clostridium perfringens str. 13 988226 NP_560936.1 CDS addB NC_003366.1 26116 29592 D similar to sp:ADDB_BACSU ATP-DEPENDENT NUCLEASE SUBUNIT B from Bacillus subtilis (1166 aa); 32.7% identity in 1153 aa overlap. 1 transmembrane region was found by PSORT; ATP-dependent deoxyribonuclease subunit B 26116..29592 Clostridium perfringens str. 13 988225 NP_560937.1 CDS addA NC_003366.1 29582 33388 D similar to sp:ADDA_BACSU ATP-DEPENDENT NUCLEASE SUBUNIT A from Bacillus subtilis (1232 aa); 39.9% identity in 1256 aa overlap; ATP-dependent deoxyribonuclease subunit A 29582..33388 Clostridium perfringens str. 13 988224 NP_560938.1 CDS papS NC_003366.1 33646 34920 R similar to pir:A70188 polynucleotide adenylyltransferase (papS) homolog from Borrelia burgdorferi (410 aa); 38.2% identity in 411 aa overlap; poly(A) polymerase complement(33646..34920) Clostridium perfringens str. 13 988223 NP_560939.1 CDS CPE0023 NC_003366.1 35030 36022 D similar to pir:G69818 CMP-binding factor homolog yhaM from Bacillus subtilis (314 aa); 41.2% identity in 301 aa overlap; CMP-binding factor 35030..36022 Clostridium perfringens str. 13 988222 NP_560940.1 CDS CPE0024 NC_003366.1 36054 37214 R C-terminal portion is similar to pir:A69760 conserved hypothetical protein yciB from Bacillus subtilis (194 aa); 33.9% identity in 165 aa overlap. N-terminal signal sequence was found by PSORT; ErfK/YbiS/YcfS/YnhG family protein complement(36054..37214) Clostridium perfringens str. 13 988221 NP_560941.1 CDS pepT NC_003366.1 37407 38627 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 37407..38627 Clostridium perfringens str. 13 988220 NP_560942.1 CDS CPE0026 NC_003366.1 38733 39608 R similar to pir:D69841 hypothetical protein yitS from Bacillus subtilis (283 aa); 36.8% identity in 280 aa overlap. 1 transmembrane region was found by PSORT; degV family protein complement(38733..39608) Clostridium perfringens str. 13 988219 NP_560943.1 CDS CPE0027 NC_003366.1 40045 41184 D partially similar to gpu:AE004265_8 hypothetical protein from Vibrio cholerae (383 aa); 27.3% identity in 161 aa overlap; hypothetical protein 40045..41184 Clostridium perfringens str. 13 988217 NP_560944.1 CDS psdD NC_003366.1 41300 42184 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(41300..42184) Clostridium perfringens str. 13 988289 NP_560945.1 CDS CPE0029 NC_003366.1 42348 42917 D similar to pir:S38906 hypothetical protein 4 from Clostridium pasteurianum (190 aa); 45.7% identity in 186 aa overlap; TetR/AcrR family; TetR family transcriptional regulator 42348..42917 Clostridium perfringens str. 13 988255 NP_560946.1 CDS hlyA NC_003366.1 43192 44457 D similar to pir:F72326 hemolysin-related protein from Thermotoga maritima (strain MSB8) (455 aa); 34.2% identity in 401 aa overlap.Similar to many hemolysins. N-terminal signal sequence and 3 transmembrane regions were found by PSORT; hemolysin-like protein 43192..44457 Clostridium perfringens str. 13 988256 NP_560947.1 CDS CPE0031 NC_003366.1 44460 44891 D similar to sp:YAAJ_BACSU HYPOTHETICAL 17.8 KDA PROTEIN IN SERS-DNAH INTERGENIC REGION from Bacillus subtilis (161 aa); 52.8% identity in 125 aa overlap; cytidine/deoxycytidylate deaminase 44460..44891 Clostridium perfringens str. 13 988257 NP_560948.1 CDS CPE0032 NC_003366.1 44954 45412 D no significant homology.; hypothetical protein 44954..45412 Clostridium perfringens str. 13 988258 NP_560949.1 CDS CPE0033 NC_003366.1 45536 45901 D no significant homology. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 45536..45901 Clostridium perfringens str. 13 988259 NP_560950.1 CDS CPE0034 NC_003366.1 46011 46673 D similar to sp:Y531_BORBU HYPOTHETICAL PROTEIN BB0531 PRECURSOR from Borrelia burgdorferi (204 aa); 27.5% identity in 193 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 46011..46673 Clostridium perfringens str. 13 988260 NP_560951.1 CDS yplC NC_003366.1 46787 48259 R similar to sp:YPLC_CLOPE HYPOTHETICAL 55.7 KDA PROTEIN IN PLC 5'REGION (ORF 2) from Clostridium perfringens (490 aa); 98.8% identity in 490 aa overlap; hypothetical protein complement(46787..48259) Clostridium perfringens str. 13 988261 NP_560952.1 CDS plc NC_003366.1 48590 49786 D similar to gp:CLOCPAA_1 alpha-toxin (phospholipase C) from Clostridium perfringens (398 aa); 100% identity in 398 aa overlap. N-terminal signal sequence was found by PSORT; alpha-toxin; phospholipase C 48590..49786 Clostridium perfringens str. 13 988262 NP_560953.1 CDS cobW NC_003366.1 49974 50900 D similar to pir:H70313 cobalamin synthesis related protein CobW from Aquifex aeolicus (292 aa); 30.7% identity in 261 aa overlap; CobW/P47K family protein 49974..50900 Clostridium perfringens str. 13 988263 NP_560954.1 CDS CPE0038 NC_003366.1 50920 51504 D similar to pir:B69760 conserved hypothetical protein yciC from Bacillus subtilis (397 aa); 28.2% identity in 174 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 50920..51504 Clostridium perfringens str. 13 988264 NP_560955.1 CDS CPE0039 NC_003366.1 51507 52400 D similar to gpu:AP001512_105 BH1518 gene product from Bacillus halodurans (337 aa); 39.6% identity in 283 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 51507..52400 Clostridium perfringens str. 13 988265 NP_560956.1 CDS CPE0040 NC_003366.1 52413 53132 D partially similar to gpu:AP001512_104 BH1517 gene product from Bacillus halodurans (321 aa); 26.9% identity in 108 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 52413..53132 Clostridium perfringens str. 13 988266 NP_560957.1 CDS CPE0041 NC_003366.1 53398 54186 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 53398..54186 Clostridium perfringens str. 13 988267 NP_560958.1 CDS CPE0042 NC_003366.1 54959 55462 D similar to gp:CLOSERTRNA_1 Orf1 from Clostridium perfringens (167 aa); 82.6% identity in 167 aa overlap; lipoprotein 54959..55462 Clostridium perfringens str. 13 988269 NP_560959.1 CDS brnQ NC_003366.1 55899 57185 D similar to gp:CLOSERTRNA_2 sodium-coupled branched-chain amino acid carrier from Clostridium perfringens (338 aa); 95.3% identity in 338 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT; branched chain amino acid ABC transporter carrier protein 55899..57185 Clostridium perfringens str. 13 988270 NP_560960.1 CDS folA NC_003366.1 57339 57824 R similar to pir:S52336 dihydrofolate reductase (EC 1.5.1.3) from Haemophilus influenzae (clinical isolate R1042) (160 aa); 40.4% identity in 136 aa overlap; dihydrofolate reductase complement(57339..57824) Clostridium perfringens str. 13 988271 NP_560961.1 CDS dnaX NC_003366.1 58015 59658 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 58015..59658 Clostridium perfringens str. 13 988272 NP_560962.1 CDS CPE0046 NC_003366.1 59770 60108 D similar to sp|P24281|YAAK_BACSU HYPOTHETICAL 11.8 KD PROTEIN IN DNAZ-RECR INTERGENIC REGION from Bacillus subtilis (107 aa); 60% identity in 50 aa overlap; hypothetical protein 59770..60108 Clostridium perfringens str. 13 988273 NP_560963.1 CDS recR NC_003366.1 60206 60802 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 60206..60802 Clostridium perfringens str. 13 988274 NP_560964.1 CDS CPE0048 NC_003366.1 61028 61306 D no significant homology.; hypothetical protein 61028..61306 Clostridium perfringens str. 13 988275 NP_560965.1 CDS CPE0049 NC_003366.1 61322 61600 D no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 61322..61600 Clostridium perfringens str. 13 988276 NP_560966.1 CDS CPE0050 NC_003366.1 61875 63005 D no significant homology. 8 transmembrane regions were found by PSORT.; hypothetical protein 61875..63005 Clostridium perfringens str. 13 988277 NP_560967.1 CDS CPE0051 NC_003366.1 63169 63348 D no significant homology.; hypothetical protein 63169..63348 Clostridium perfringens str. 13 988278 NP_560968.1 CDS CPE0052 NC_003366.1 63417 63599 D no significant homology.; hypothetical protein 63417..63599 Clostridium perfringens str. 13 988279 NP_560969.1 CDS CPE0053 NC_003366.1 63763 64839 D similar to pir:E71001 probable transaminase (EC 2.6.1.-) PH1308 from Pyrococcus horikoshii (386 aa); 38.6% identity in 342 aa overlap; class V aminotransferase 63763..64839 Clostridium perfringens str. 13 988280 NP_560970.1 CDS serA NC_003366.1 64908 65813 D similar to pir:B72257 D-3-phosphoglycerate dehydrogenase from Thermotoga maritima (strain MSB8) (306 aa); 42.4% identity in 297 aa overlap; D-3-phosphoglycerate dehydrogenase 64908..65813 Clostridium perfringens str. 13 988281 NP_560971.1 CDS CPE0055 NC_003366.1 65960 67216 D similar to pir:G72244 hypothetical protein from Thermotoga maritima (strain MSB8) (406 aa); 41.9% identity in 415 aa overlap; hypothetical protein 65960..67216 Clostridium perfringens str. 13 988282 NP_560972.1 CDS mtn NC_003366.1 67272 67967 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(67272..67967) Clostridium perfringens str. 13 988283 NP_560973.1 CDS CPE0057 NC_003366.1 68347 69108 D similar to gpu:AP001511_144 BH1255 gene product from Bacillus halodurans (259 aa); 37.4% identity in 246 aa overlap. 2 transmembrane regions were found by PSORT.; HesA/MoeB/ThiF family protein 68347..69108 Clostridium perfringens str. 13 988284 NP_560974.1 CDS CPE0058 NC_003366.1 69399 70565 D similar to pir:S66834 probable membrane protein YOL137w from yeast (Saccharomyces cerevisiae) (497 aa); 25.2% identity in 262 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; hypothetical protein 69399..70565 Clostridium perfringens str. 13 988285 NP_560975.1 CDS CPE0059 NC_003366.1 70590 71528 D C-terminal portion is similar to gpu:AP001509_23 ribosomal-protein (S5)-alanine N-acetyltransferase from Bacillus halodurans (182 aa); 39% identity in 164 aa overlap; GNAT family acetyltransferase 70590..71528 Clostridium perfringens str. 13 988286 NP_560976.1 CDS dgk2 NC_003366.1 71545 72231 D similar to pir:B56168 deoxyguanosine kinase (EC 2.7.1.113) from Lactobacillus acidophilus (224 aa); 44.2% identity in 199 aa overlap; deoxyguanosine kinase 71545..72231 Clostridium perfringens str. 13 988287 NP_560977.1 CDS CPE0061 NC_003366.1 78534 79856 D similar to pir:T35220 probable integral membrane transport protein from Streptomyces coelicolor (474 aa); 28.8% identity in 427 aa overlap; integral membrane transport protein 78534..79856 Clostridium perfringens str. 13 988294 NP_560978.1 CDS CPE0062 NC_003366.1 79983 80132 D no significant homology.; hypothetical protein 79983..80132 Clostridium perfringens str. 13 988295 NP_560979.1 CDS glgB NC_003366.1 80480 82504 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 80480..82504 Clostridium perfringens str. 13 988296 NP_560980.1 CDS glgA NC_003366.1 82532 83980 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 82532..83980 Clostridium perfringens str. 13 988297 NP_560981.1 CDS glgP NC_003366.1 84010 86445 D similar to gpu:AP001510_259 glycogen phosphorylase from Bacillus halodurans (815 aa); 53.9% identity in 801 aa overlap; glycogen phosphorylase 84010..86445 Clostridium perfringens str. 13 988298 NP_560982.1 CDS CPE0066 NC_003366.1 86541 88361 D similar to prf:2008115A amylopullulanase from Thermoanaerobacterium saccharolyticum (1288 aa); 39.2% identity in 587 aa overlap; amylopullulanase 86541..88361 Clostridium perfringens str. 13 988299 NP_560983.1 CDS CPE0067 NC_003366.1 88416 88859 D no significant homology.; hypothetical protein 88416..88859 Clostridium perfringens str. 13 988300 NP_560984.1 CDS glgC NC_003366.1 89069 90250 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 89069..90250 Clostridium perfringens str. 13 988301 NP_560985.1 CDS glgD NC_003366.1 90280 91386 D similar to gpu:AP001510_261 required for glycogen biosynthesis from Bacillus halodurans (368 aa); 41.2% identity in 364 aa overlap; glycogen biosynthesis protein 90280..91386 Clostridium perfringens str. 13 988302 NP_560986.1 CDS CPE0070 NC_003366.1 91449 91895 D similar to gpu:AP001519_222 acetobutylicum phosphotransbutyrylase from Bacillus halodurans (146 aa); 43% identity in 135 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; phosphotransbutyrylase 91449..91895 Clostridium perfringens str. 13 988303 NP_560987.1 CDS clsA NC_003366.1 92062 93504 R similar to sp:CLS2_BACSU PROBABLE CARDIOLIPIN SYNTHETASE 2 (EC 2.7.8.-) (CARDIOLIPIN SYNTHASE 2) (CL SYNTHASE 2) from Bacillus subtilis (482 aa); 39.4% identity in 454 aa overlap. ATT start. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; cardiolipin synthase complement(92062..93504) Clostridium perfringens str. 13 988304 NP_560988.1 CDS CPE0072 NC_003366.1 93936 95492 D similar to gpu:AP001513_25 BH1752 gene product from Bacillus halodurans (514 aa); 47.8% identity in 508 aa overlap. 11 transmembrane regions were found by PSORT.; hypothetical protein 93936..95492 Clostridium perfringens str. 13 988305 NP_560989.1 CDS CPE0073 NC_003366.1 101425 102009 D similar to pir|D69632 transcription antiterminator glcT from Bacillus subtilis (285 aa); 35.5% identity in 169 aa overlap. Probably truncated by frameshift mutation; transcription antiterminator 101425..102009 Clostridium perfringens str. 13 988310 NP_560990.1 CDS CPE0074 NC_003366.1 101897 102274 D similar to gb|AAB38977.1| (U34873) transcription antiterminator from Bacillus stearothermophilus (277 aa); 31.9% identity in 119 aa overlap. Probably truncated by frameshift mutation; transcription antiterminator 101897..102274 Clostridium perfringens str. 13 988311 NP_560991.1 CDS CPE0075 NC_003366.1 102497 102754 R no significant homology.; hypothetical protein complement(102497..102754) Clostridium perfringens str. 13 988312 NP_560992.1 CDS CPE0076 NC_003366.1 103447 104664 D similar to N-terminal of sp:PTAA_KLEPN PTS SYSTEM, N-ACETYLGLUCOSAMINE-SPECIFIC IIABC COMPONENT (EIIABC-NAG) (N-ACETYLGLUCOSAMINE-PERMEASE IIABC COMPONENT) (PHOSPHOTRANSFERASE ENZYME II, ABC COMPONENT) (EC 2.7.1.69) (EII-NAG) from Klebsiella pneumoniae (651 aa); 46.7% identity in 366 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; PTS system N-acetylglucosamine-specific transporter subunit IIBC 103447..104664 Clostridium perfringens str. 13 988313 NP_560993.1 CDS CPE0077 NC_003366.1 104712 104897 D no significant homology.; hypothetical protein 104712..104897 Clostridium perfringens str. 13 988314 NP_560994.1 CDS CPE0078 NC_003366.1 104966 105484 R similar to sp:YHGD_BACSU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN HEMY-GLTT INTERGENIC REGION (ORFA) from Bacillus subtilis (191 aa); 30.2% identity in 126 aa overlap; TetR/AcrR family; TetR family transcriptional regulator complement(104966..105484) Clostridium perfringens str. 13 988315 NP_560995.1 CDS fus NC_003366.1 111585 113675 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 111585..113675 Clostridium perfringens str. 13 988320 NP_560996.1 CDS CPE0080 NC_003366.1 114098 114334 D no significant homology.; hypothetical protein 114098..114334 Clostridium perfringens str. 13 988321 NP_560997.1 CDS glcK NC_003366.1 114586 115533 D similar to sp:GLK_BACSU GLUCOKINASE (EC 2.7.1.2) (GLUCOSE KINASE) from Bacillus subtilis (321 aa); 34.7% identity in 297 aa overlap. 1 transmembrane region was found by PSORT; glucose kinase 114586..115533 Clostridium perfringens str. 13 988322 NP_560998.1 CDS CPE0082 NC_003366.1 116074 116616 D similar to sp:Y746_METJA HYPOTHETICAL PROTEIN MJ0746 from Methanococcus jannaschii (141 aa); 44.8% identity in 143 aa overlap; hypothetical protein 116074..116616 Clostridium perfringens str. 13 988323 NP_560999.1 CDS gpmA NC_003366.1 116949 117572 D similar to pir:A70471 phosphoglycerate mutase 1 from Aquifex aeolicus (212 aa); 30% identity in 200 aa overlap. (EC 5.4.2.1); phosphoglycerate mutase 116949..117572 Clostridium perfringens str. 13 988324 NP_561000.1 CDS iolR NC_003366.1 117931 118701 R similar to sp:IOLR_BACSU DNA-BINDING PROTEIN IOLR from Bacillus subtilis (251 aa); 44.4% identity in 250 aa overlap; transcription repressor of myo-inositol catabolism operon complement(117931..118701) Clostridium perfringens str. 13 988325 NP_561001.1 CDS mdh NC_003366.1 119183 120337 D similar to pir:A42952 methanol dehydrogenase (EC 1.1.1.244) from Bacillus sp. (381 aa); 35.4% identity in 381 aa overlap; alcohol dehydrogenase 119183..120337 Clostridium perfringens str. 13 988326 NP_561002.1 CDS alf1 NC_003366.1 120344 121189 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 120344..121189 Clostridium perfringens str. 13 988327 NP_561003.1 CDS iolC NC_003366.1 121203 122219 D similar to sp:IOLC_BACSU IOLC PROTEIN from Bacillus subtilis (325 aa); 46.5% identity in 318 aa overlap; myo-inositol catabolism protein 121203..122219 Clostridium perfringens str. 13 988328 NP_561004.1 CDS iolB NC_003366.1 122233 123000 D similar to sp:IOLB_BACSU IOLB PROTEIN from Bacillus subtilis (271 aa); 24.6% identity in 244 aa overlap; myo-inositol catabolism protein 122233..123000 Clostridium perfringens str. 13 988329 NP_561005.1 CDS iolD NC_003366.1 123017 124936 D similar to sp:IOLD_BACSU PROBABLE MALONIC SEMIALDEHYDE OXIDATIVE DECARBOXYLASE (EC 1.-.-.-) from Bacillus subtilis (580 aa); 53.8% identity in 586 aa overlap. 1 transmembrane region was found by PSORT; myo-inositol catabolism protein 123017..124936 Clostridium perfringens str. 13 988330 NP_561006.1 CDS CPE0090 NC_003366.1 125006 126013 D similar to sp:YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN CSBX-NADA INTERGENIC REGION (ORF1) from Bacillus subtilis (341 aa); 49.1% identity in 318 aa overlap; dehydrogenase 125006..126013 Clostridium perfringens str. 13 988331 NP_561007.1 CDS iolE NC_003366.1 126132 127025 D similar to sp:IOLE_BACSU IOLE PROTEIN from Bacillus subtilis (297 aa); 44.6% identity in 294 aa overlap; myo-inositol catabolism protein 126132..127025 Clostridium perfringens str. 13 988332 NP_561008.1 CDS CPE0092 NC_003366.1 127107 128696 D uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; symporter YidK 127107..128696 Clostridium perfringens str. 13 988333 NP_561009.1 CDS CPE0093 NC_003366.1 128783 129832 D similar to gpu:AP001514_226 dehydrogenase from Bacillus halodurans (345 aa); 62.5% identity in 339 aa overlap; dehydrogenase 128783..129832 Clostridium perfringens str. 13 988334 NP_561010.1 CDS CPE0094 NC_003366.1 130202 130960 D similar to sp:YWCJ_BACSU HYPOTHETICAL 28.4 KDA PROTEIN IN SACT-SACP INTERGENIC REGION from Bacillus subtilis (256 aa); 35.1% identity in 242 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein 130202..130960 Clostridium perfringens str. 13 988335 NP_561011.1 CDS CPE0095 NC_003366.1 131191 131967 D similar to gp:TTBCSOPRN_1 crotonase from Thermoanaerobacterium thermosaccharolyticum (259 aa); 58.9% identity in 253 aa overlap. (EC 4.2.1.55); 3-hydroxybutyryl-CoA dehydratase; crotonase 131191..131967 Clostridium perfringens str. 13 988336 NP_561012.1 CDS CPE0096 NC_003366.1 132070 133620 D similar to gp:CPR276553_2 propionate CoA-transferase from Clostridium propionicum (524 aa); 56.6% identity in 516 aa overlap. 1 transmembrane region was found by PSORT; propionate CoA-transferase 132070..133620 Clostridium perfringens str. 13 988337 NP_561013.1 CDS acdS NC_003366.1 133724 134860 D similar to sp:ACDS_CLOAB ACYL-COA DEHYDROGENASE, SHORT-CHAIN SPECIFIC (EC 1.3.99.2) (SCAD) (BUTYRYL-COA DEHYDROGENASE) from Clostridium acetobutylicum (379 aa); 58.5% identity in 378 aa overlap. 1 transmembrane region was found by PSORT; acyl-CoA dehydrogenase 133724..134860 Clostridium perfringens str. 13 988338 NP_561014.1 CDS CPE0098 NC_003366.1 135262 135612 R similar to pir:A69364 hypothetical protein AF0913 from Archaeoglobus fulgidus (112 aa); 43.1% identity in 116 aa overlap; hypothetical protein complement(135262..135612) Clostridium perfringens str. 13 988339 NP_561015.1 CDS gldA NC_003366.1 136190 137320 D forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 136190..137320 Clostridium perfringens str. 13 988340 NP_561016.1 CDS CPE0100 NC_003366.1 137346 139094 D in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone; dihydroxyacetone kinase 137346..139094 Clostridium perfringens str. 13 988341 NP_561017.1 CDS CPE0101 NC_003366.1 139454 140887 D similar to pir:B69532 multidrug resistance protein homolog from Archaeoglobus fulgidus (503 aa); 30.2% identity in 424 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; multidrug resistance protein 139454..140887 Clostridium perfringens str. 13 988342 NP_561018.1 CDS CPE0102 NC_003366.1 141164 141436 D no significant homology.; hypothetical protein 141164..141436 Clostridium perfringens str. 13 988343 NP_561019.1 CDS ldh NC_003366.1 141837 142790 R Converts (S)-lactate and NAD(+) to pyruvate and NADH; L-lactate dehydrogenase complement(141837..142790) Clostridium perfringens str. 13 988344 NP_561020.1 CDS CPE0104 NC_003366.1 143416 144591 D no significant homology. 5 transmembrane regions were found by PSORT.; hypothetical protein 143416..144591 Clostridium perfringens str. 13 988345 NP_561021.1 CDS CPE0105 NC_003366.1 144710 145147 D no significant homology.; hypothetical protein 144710..145147 Clostridium perfringens str. 13 988346 NP_561022.1 CDS CPE0106 NC_003366.1 145358 146098 D partially similar to pir:S32215 hypothetical protein 1 from Bacillus megaterium (226 aa); 29.9% identity in 67 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 145358..146098 Clostridium perfringens str. 13 988347 NP_561023.1 CDS CPE0107 NC_003366.1 146210 147082 D partially similar to pir:S32215 hypothetical protein 1 from Bacillus megaterium (226 aa); 28% identity in 100 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein 146210..147082 Clostridium perfringens str. 13 988348 NP_561024.1 CDS CPE0108 NC_003366.1 147218 148582 R similar to gp:CTH275974_4 GTP-binding protein from Clostridium thermocellum (400 aa); 39% identity in 433 aa overlap; GTP-binding protein complement(147218..148582) Clostridium perfringens str. 13 988349 NP_561025.1 CDS CPE0109 NC_003366.1 149310 149594 R no significant homology.; hypothetical protein complement(149310..149594) Clostridium perfringens str. 13 988350 NP_561026.1 CDS thiH NC_003366.1 150273 151694 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH complement(150273..151694) Clostridium perfringens str. 13 988351 NP_561027.1 CDS CPE0111 NC_003366.1 151800 152051 R similar to pir:A72274 hypothetical protein from Thermotoga maritima (strain MSB8) (82 aa); 34.7% identity in 75 aa overlap; hypothetical protein complement(151800..152051) Clostridium perfringens str. 13 988352 NP_561028.1 CDS CPE0112 NC_003366.1 152495 154060 D N-terminal portion is similar to sp:YPUA_BACSU HYPOTHETICAL 31.3 KDA PROTEIN IN LYSA-PPIB INTERGENIC REGION (ORFX19) from Bacillus subtilis (290 aa); 32.2% identity in 273 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 152495..154060 Clostridium perfringens str. 13 988353 NP_561029.1 CDS CPE0113 NC_003366.1 154209 154436 D no significant homology.; hypothetical protein 154209..154436 Clostridium perfringens str. 13 988354 NP_561030.1 CDS CPE0114 NC_003366.1 154720 154944 D no significant homology.; hypothetical protein 154720..154944 Clostridium perfringens str. 13 988355 NP_561031.1 CDS CPE0115 NC_003366.1 155002 155943 R similar to gp:SCC53_4 secreted protein from Streptomyces coelicolor A3(2) (336 aa); 33.7% identity in 199 aa overlap; N-acetylmuramoyl-L-alanine amidase complement(155002..155943) Clostridium perfringens str. 13 988356 NP_561032.1 CDS CPE0116 NC_003366.1 155956 157116 R no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein complement(155956..157116) Clostridium perfringens str. 13 988357 NP_561033.1 CDS CPE0117 NC_003366.1 157128 158378 R similar to pir:A70030 hypothetical protein yvbJ from Bacillus subtilis (605 aa); 25% identity in 172 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein complement(157128..158378) Clostridium perfringens str. 13 988358 NP_561034.1 CDS CPE0118 NC_003366.1 158494 159294 D no significant homology. 4 transmembrane regions were found by PSORT.; hypothetical protein 158494..159294 Clostridium perfringens str. 13 988359 NP_561035.1 CDS CPE0119 NC_003366.1 159434 160114 D similar to gp:AF036964_1 response regulator from Lactobacillus sakei (224 aa); 49.3% identity in 203 aa overlap; two-component response regulator 159434..160114 Clostridium perfringens str. 13 988360 NP_561036.1 CDS CPE0120 NC_003366.1 160111 161124 D similar to gp:AF036964_2 histidine kinase from Lactobacillus sakei (339 aa); 38.2% identity in 178 aa overlap. 1 transmembrane region was found by PSORT; two-component sensor histidine kinase 160111..161124 Clostridium perfringens str. 13 988361 NP_561037.1 CDS CPE0121 NC_003366.1 161176 161373 D no significant homology.; hypothetical protein 161176..161373 Clostridium perfringens str. 13 988362 NP_561038.1 CDS CPE0122 NC_003366.1 161923 162693 D similar to gpu:AP001508_9 ABC transporter (ATP-binding protein) from Bacillus halodurans (259 aa); 52% identity in 252 aa overlap; ATP-binding protein; ABC transporter 161923..162693 Clostridium perfringens str. 13 988363 NP_561039.1 CDS CPE0123 NC_003366.1 162683 164662 D similar to pir:G70032 ABC transporter (permease) homolog yvcS from Bacillus subtilis (646 aa); 24.1% identity in 602 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; permease; ABC transporter 162683..164662 Clostridium perfringens str. 13 988364 NP_561040.1 CDS CPE0124 NC_003366.1 164831 165400 R no significant homology. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein complement(164831..165400) Clostridium perfringens str. 13 988365 NP_561041.1 CDS CPE0125 NC_003366.1 165492 165704 D similar to pir:F69799 hypothetical protein yezA from Bacillus subtilis (68 aa); 37.9% identity in 66 aa overlap; hypothetical protein 165492..165704 Clostridium perfringens str. 13 988366 NP_561042.1 CDS CPE0126 NC_003366.1 165999 166325 D no significant homology.; hypothetical protein 165999..166325 Clostridium perfringens str. 13 988367 NP_561043.1 CDS CPE0127 NC_003366.1 166569 166763 D no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 166569..166763 Clostridium perfringens str. 13 988368 NP_561044.1 CDS CPE0128 NC_003366.1 166956 167585 D similar to gpu:AE004302_6 conserved hypothetical protein from Vibrio cholerae (322 aa); 28.8% identity in 240 aa overlap. ATT start. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 166956..167585 Clostridium perfringens str. 13 988369 NP_561045.1 CDS CPE0129 NC_003366.1 168100 169119 D similar to sp:YEIH_HAEIN HYPOTHETICAL PROTEIN HI1643 from Haemophilus influenzae (338 aa); 28% identity in 314 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 168100..169119 Clostridium perfringens str. 13 988370 NP_561046.1 CDS CPE0130 NC_003366.1 169320 169472 D no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 169320..169472 Clostridium perfringens str. 13 988371 NP_561047.1 CDS CPE0131 NC_003366.1 169828 170721 R similar to pir:B71256 conserved hypothetical integral membrane protein TP0986 from Treponema pallidum (294 aa); 33.7% identity in 270 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein complement(169828..170721) Clostridium perfringens str. 13 988372 NP_561048.1 CDS cinA NC_003366.1 171050 172288 D similar to sp:CINA_BACSU COMPETENCE-DAMAGE PROTEIN from Bacillus subtilis (416 aa); 43.1% identity in 394 aa overlap; competence damage-inducible protein A 171050..172288 Clostridium perfringens str. 13 988373 NP_561049.1 CDS CPE0133 NC_003366.1 172988 173914 D similar to pir:S75835 hypothetical protein slr1288 from Synechocystis sp. (strain PCC 6803) (194 aa); 30.2% identity in 126 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; CAAX amino terminal protease 172988..173914 Clostridium perfringens str. 13 988374 NP_561050.1 CDS CPE0134 NC_003366.1 174180 174389 D no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 174180..174389 Clostridium perfringens str. 13 988375 NP_561051.1 CDS rubY NC_003366.1 174742 175329 D similar to sp:RUBY_CLOPE RUBRERYTHRIN from Clostridium perfringens (195 aa); 99% identity in 195 aa overlap; rubrerythrin 174742..175329 Clostridium perfringens str. 13 988376 NP_561052.1 CDS CPE0136 NC_003366.1 175492 176037 R similar to sp:Y099_PYRHO HYPOTHETICAL PROTEIN PH0099 from Pyrococcus horikoshii (184 aa); 31.3% identity in 96 aa overlap; hypothetical protein complement(175492..176037) Clostridium perfringens str. 13 988377 NP_561053.1 CDS CPE0137 NC_003366.1 176893 178449 D similar to pir:D69813 ABC transporter (ATP-binding protein) homolog yfmM from Bacillus subtilis (518 aa); 72.9% identity in 517 aa overlap; ATP-binding protein; ABC transporter 176893..178449 Clostridium perfringens str. 13 988378 NP_561054.1 CDS CPE0138 NC_003366.1 178710 179510 D similar to C-terminal of prf:2220313B ORF 3 - Lactococcal bacteriophage TP901-1 from Bacteriophage TP901-1 (181 aa); 39.5% identity in 167 aa overlap; hypothetical protein 178710..179510 Clostridium perfringens str. 13 988379 NP_561055.1 CDS CPE0139 NC_003366.1 179861 180331 D similar to gp:AF125554_2 transposase from Enterococcus faecium (156 aa); 72.4% identity in 156 aa overlap; transposase 179861..180331 Clostridium perfringens str. 13 988380 NP_561056.1 CDS CPE0140 NC_003366.1 180609 182378 D similar to prf:2303403A ORF 1 from Salmonella enterica (618 aa); 28% identity in 558 aa overlap; hypothetical protein 180609..182378 Clostridium perfringens str. 13 988381 NP_561057.1 CDS CPE0141 NC_003366.1 182398 182559 R no significant homology.; hypothetical protein complement(182398..182559) Clostridium perfringens str. 13 988382 NP_561058.1 CDS CPE0142 NC_003366.1 182670 182885 D similar to N-terminal of prf:2416406A ORF A from Lactobacillus casei phage A2 (160 aa); 32.1% identity in 53 aa overlap; hypothetical protein 182670..182885 Clostridium perfringens str. 13 988383 NP_561059.1 CDS CPE0143 NC_003366.1 182876 183235 D similar to N-terminal of gp:AF162221_131 ORF131 from Xestia c-nigrum granulovirus (442 aa); 40% identity in 75 aa overlap. ATT start; hypothetical protein 182876..183235 Clostridium perfringens str. 13 988384 NP_561060.1 CDS CPE0144 NC_003366.1 183767 184318 D in yeast cells this enzyme removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate; functions in tRNA splicing; the function and substrate of bacterial enzymes in organisms that do not perform splicing is unknown; RNA 2'-phosphotransferase-like protein 183767..184318 Clostridium perfringens str. 13 988385 NP_561061.1 CDS CPE0145 NC_003366.1 184608 185453 D no significant homology.; hypothetical protein 184608..185453 Clostridium perfringens str. 13 988386 NP_561062.1 CDS CPE0146 NC_003366.1 185482 186507 D similar to pir:G72422 2-keto-3-deoxygluconate kinase from Thermotoga maritima (strain MSB8) (339 aa); 38.2% identity in 322 aa overlap; 2-keto-3-deoxygluconate kinase 185482..186507 Clostridium perfringens str. 13 988387 NP_561063.1 CDS bglR NC_003366.1 186571 188370 D similar to sp:BGLR_ECOLI BETA-GLUCURONIDASE (EC 3.2.1.31) (GUS) (BETA-D-GLUCURONOSIDE GLUCURONOSOHYDROLASE) from Escherichia coli (603 aa); 48.3% identity in 598 aa overlap; beta-D-glucuronidase 186571..188370 Clostridium perfringens str. 13 988388 NP_561064.1 CDS CPE0148 NC_003366.1 188513 189202 D similar to prf:2514353L regulatory protein from Bacillus stearothermophilus (249 aa); 36.5% identity in 208 aa overlap; GntR family; transcriptional regulator 188513..189202 Clostridium perfringens str. 13 988389 NP_561065.1 CDS CPE0149 NC_003366.1 189392 190243 D Converts D-mannonate to D-mannuronate; D-mannonate oxidoreductase 189392..190243 Clostridium perfringens str. 13 988390 NP_561066.1 CDS CPE0150 NC_003366.1 190258 190866 D similar to pir:F72422 KHG-KDPG bifunctional aldolase TM0066 from Thermotoga maritima (strain MSB8) (205 aa); 46.7% identity in 197 aa overlap. N-terminal signal sequence was found by PSORT; 2-dehydro-3-deoxyphosphogluconate aldolase 190258..190866 Clostridium perfringens str. 13 988391 NP_561067.1 CDS uxuA NC_003366.1 190957 192009 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 190957..192009 Clostridium perfringens str. 13 988392 NP_561068.1 CDS uxaC NC_003366.1 192029 193429 D catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 192029..193429 Clostridium perfringens str. 13 988393 NP_561069.1 CDS uidB NC_003366.1 193550 194941 D similar to sp:UIDB_ECOLI GLUCURONIDE CARRIER PROTEIN (GLUCURONIDE PERMEASE) from Escherichia coli (457 aa); 30.5% identity in 442 aa overlap. 9 transmembrane regions were found by PSORT.; glucuronide permease 193550..194941 Clostridium perfringens str. 13 988394 NP_561070.1 CDS CPE0154 NC_003366.1 195005 196774 D similar to gp:AP001509_113 beta-hexosamidase A precursor from Bacillus halodurans (686 aa); 29% identity in 412 aa overlap; beta-hexosamidase A 195005..196774 Clostridium perfringens str. 13 988395 NP_561071.1 CDS CPE0155 NC_003366.1 197405 199576 D partially similar to gpu:AP001508_84 BH0361 gene product from Bacillus halodurans (1661 aa); 26.4% identity in 273 aa overlap.Also some similarity to sp:CNA_STAAU COLLAGEN ADHESIN PRECURSOR from Staphylococcus aureus. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 197405..199576 Clostridium perfringens str. 13 988396 NP_561072.1 CDS CPE0156 NC_003366.1 199580 201148 D similar to sp:TEE6_STRPY TRYPSIN-RESISTANT SURFACE T6 PROTEIN PRECURSOR from Streptococcus pyogenes (537 aa); 26.4% identity in 455 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; surface protein 199580..201148 Clostridium perfringens str. 13 988397 NP_561073.1 CDS CPE0157 NC_003366.1 201393 202148 D similar to gp:AF019629_2 fimbria-associated protein from Actinomyces naeslundii (365 aa); 39.5% identity in 205 aa overlap. 1 transmembrane region was found by PSORT; sortase 201393..202148 Clostridium perfringens str. 13 988398 NP_561074.1 CDS CPE0158 NC_003366.1 202217 203128 D partially similar to gpu:AP001512_149 BH1562 gene product from Bacillus halodurans (268 aa); 26.2% identity in 103 aa overlap; hypothetical protein 202217..203128 Clostridium perfringens str. 13 988399 NP_561075.1 CDS CPE0159 NC_003366.1 203688 204281 D similar to sp:YDJZ_ECOLI HYPOTHETICAL 26.2 KDA PROTEIN IN XTHA-GDHA INTERGENIC REGION from Escherichia coli (235 aa); 23% identity in 152 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 203688..204281 Clostridium perfringens str. 13 988400 NP_561076.1 CDS CPE0160 NC_003366.1 204516 205067 D similar to pir:T35433 hypothetical protein SC6A9.02 SC6A9.02 from Streptomyces coelicolor (213 aa); 45.2% identity in 177 aa overlap; hypothetical protein 204516..205067 Clostridium perfringens str. 13 988401 NP_561077.1 CDS CPE0161 NC_003366.1 205272 206738 R no significant homology.; hypothetical protein complement(205272..206738) Clostridium perfringens str. 13 988402 NP_561078.1 CDS pfoR NC_003366.1 207408 208439 D similar to pir:A43577 regulatory protein pfoR from Clostridium perfringens (343 aa); 88.7% identity in 327 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; regulatory protein 207408..208439 Clostridium perfringens str. 13 988403 NP_561079.1 CDS pfoA NC_003366.1 209028 210530 D similar to sp:TACY_CLOPE PERFRINGOLYSIN O PRECURSOR (THETA-TOXIN) (THIOL-ACTIVATED CYTOLYSIN) from Clostridium perfringens (500 aa); 99.8% identity in 500 aa overlap. N-terminal signal sequence was found by PSORT; perfringolysin O 209028..210530 Clostridium perfringens str. 13 988404 NP_561080.1 CDS CPE0164 NC_003366.1 210726 211184 D similar to gp:CLOPBG_2 unknown from Clostridium perfringens (152 aa); 100% identity in 152 aa overlap; hypothetical protein 210726..211184 Clostridium perfringens str. 13 988405 NP_561081.1 CDS CPE0165 NC_003366.1 211256 211423 D similar to gp:CLOPBG_3 unknown from Clostridium perfringens (72 aa); 100% identity in 55 aa overlap; hypothetical protein 211256..211423 Clostridium perfringens str. 13 988406 NP_561082.1 CDS CPE0166 NC_003366.1 212226 213713 D similar to gp:CLOPBG_4 membrane-spanning transporter protein from Clostridium perfringens (495 aa); 94.9% identity in 495 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; membrane-spanning transporter protein 212226..213713 Clostridium perfringens str. 13 988407 NP_561083.1 CDS pbg NC_003366.1 213872 215941 D similar to gp:CLOPBG_5 beta-galactosidase from Clostridium perfringens (676 aa); 99.4% identity in 676 aa overlap; beta-galactosidase 213872..215941 Clostridium perfringens str. 13 988408 NP_561084.1 CDS arcA NC_003366.1 216493 217734 D catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 216493..217734 Clostridium perfringens str. 13 988409 NP_561085.1 CDS arcB NC_003366.1 217842 218837 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 217842..218837 Clostridium perfringens str. 13 988410 NP_561086.1 CDS arcD NC_003366.1 218982 220418 D similar to sp:ARCD_CLOPE ARGININE/ORNITHINE ANTIPORTER from Clostridium perfringens (476 aa); 88.5% identity in 478 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; arginine/ornithine antiporter 218982..220418 Clostridium perfringens str. 13 988411 NP_561087.1 CDS arcC NC_003366.1 220479 221423 D catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 220479..221423 Clostridium perfringens str. 13 988412 NP_561088.1 CDS argR NC_003366.1 221496 221951 D similar to sp:ARGR_CLOPE ARGININE REPRESSOR from Clostridium perfringens (145 aa); 91% identity in 144 aa overlap; arginine repressor ArgR 221496..221951 Clostridium perfringens str. 13 988413 NP_561089.1 CDS colA NC_003366.1 222495 225809 D similar to sp:COLA_CLOPE MICROBIAL COLLAGENASE PRECURSOR (EC 3.4.24.3) (120 KDA COLLAGENASE) from Clostridium perfringens (1104 aa); 98.1% identity in 1104 aa overlap. N-terminal signal sequence was found by PSORT; kappa-toxin; collagenase 222495..225809 Clostridium perfringens str. 13 988414 NP_561090.1 CDS mscL NC_003366.1 225957 226415 R forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(225957..226415) Clostridium perfringens str. 13 988415 NP_561091.1 CDS ycgJ NC_003366.1 227207 227782 D similar to pir:A83577 probable transcription regulator PA0547 from Pseudomonas aeruginosa (344 aa); 33.6% identity in 134 aa overlap.Also similar to pir:E69758 hypothetical protein ycgJ from Bacillus subtilis. 1 transmembrane region was found by PSORT; UbiE/COQ5 family methyltransferase 227207..227782 Clostridium perfringens str. 13 988416 NP_561092.1 CDS metB NC_003366.1 227846 229000 D similar to gp:AB028629_1 cystathionine beta-synthase from Clostridium perfringens (351 aa); 96.6% identity in 351 aa overlap. 1 transmembrane region was found by PSORT; cystathionine beta-lyase 227846..229000 Clostridium perfringens str. 13 988417 NP_561093.1 CDS cysK NC_003366.1 228987 229895 D similar to pir:T43792 cysteine synthase (EC 4.2.99.8) cysK from Clostridium perfringens (302 aa); 96.7% identity in 302 aa overlap. 1 transmembrane region was found by PSORT; cysteine synthase 228987..229895 Clostridium perfringens str. 13 988418 NP_561094.1 CDS luxS NC_003366.1 229993 230448 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 229993..230448 Clostridium perfringens str. 13 988419 NP_561095.1 CDS lipA NC_003366.1 231156 232166 D similar to pir:T43794 probable lipase lipA from Clostridium perfringens (311 aa); 99.4% identity in 310 aa overlap. ATA start; lipase 231156..232166 Clostridium perfringens str. 13 988420 NP_561096.1 CDS CPE0180 NC_003366.1 232388 233179 R similar to pir:H75377 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (262 aa); 28.5% identity in 263 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein complement(232388..233179) Clostridium perfringens str. 13 988421 NP_561097.1 CDS CPE0181 NC_003366.1 233184 234002 R similar to pir:G75377 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (267 aa); 21.2% identity in 226 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein complement(233184..234002) Clostridium perfringens str. 13 988422 NP_561098.1 CDS CPE0182 NC_003366.1 234005 235030 R similar to gp:SCE6_29 ABC-transport protein, ATP-binding component from Streptomyces coelicolor A3(2) (354 aa); 50% identity in 258 aa overlap; ATP-binding protein; ABC transporter ATP-binding protein complement(234005..235030) Clostridium perfringens str. 13 988423 NP_561099.1 CDS CPE0183 NC_003366.1 235341 236009 D similar to sp:YFKO_BACSU NAD(P)H NITROREDUCTASE YFKO (EC 1.-.-.-) from Bacillus subtilis (221 aa); 42.9% identity in 217 aa overlap; nitroreductase 235341..236009 Clostridium perfringens str. 13 988424 NP_561100.1 CDS nanP NC_003366.1 236295 236960 D Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 236295..236960 Clostridium perfringens str. 13 988425 NP_561101.1 CDS nanA NC_003366.1 236997 237863 D catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 236997..237863 Clostridium perfringens str. 13 988426 NP_561102.1 CDS CPE0186 NC_003366.1 237966 239483 D similar to pir:S75887 hypothetical protein from Synechocystis sp. (strain PCC 6803 (512 aa); 31.5% identity in 428 aa overlap. N-terminal signal sequence and 12 transmembrane regions were found by PSORT.; hypothetical protein 237966..239483 Clostridium perfringens str. 13 988427 NP_561103.1 CDS CPE0187 NC_003366.1 239593 240045 D similar to pir:S56477 hypothetical 17.3K protein (pyrL-argI intergenic region) from Escherichia coli (153 aa); 32% identity in 153 aa overlap; hypothetical protein 239593..240045 Clostridium perfringens str. 13 988428 NP_561104.1 CDS CPE0188 NC_003366.1 240201 241088 D similar to pir:S43901 hypothetical protein A from Clostridium perfringens (182 aa); 90.4% identity in 177 aa overlap. Also similar to gp:AP001509_235 glucose kinase from Bacillus halodurans. 2 transmembrane regions were found by PSORT.; ROK family protein 240201..241088 Clostridium perfringens str. 13 988429 NP_561105.1 CDS CPE0189 NC_003366.1 241279 242118 D similar to sp:YNGB_CLOPE HYPOTHETICAL 31.2 KDA PROTEIN IN NAGH 5'REGION (ORFB) from Clostridium perfringens (279 aa); 100% identity in 279 aa overlap; RpiR family transcriptional regulator 241279..242118 Clostridium perfringens str. 13 988430 NP_561106.1 CDS CPE0190 NC_003366.1 242319 242708 R similar to sp:YNGC_CLOPE HYPOTHETICAL 10.8 KDA PROTEIN IN NAGH 5'REGION (ORFC) from Clostridium perfringens (94 aa); 100% identity in 86 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(242319..242708) Clostridium perfringens str. 13 988431 NP_561107.1 CDS nagH NC_003366.1 242971 247857 D similar to sp:NAGH_CLOPE HYALURONOGLUCOSAMINIDASE PRECURSOR (EC 3.2.1.35) (HYALURONIDASE) (MU TOXIN) from Clostridium perfringens (1042 aa); 97.5% identity in 1041 aa overlap. N-terminal signal sequence was found by PSORT; hyaluronidase 242971..247857 Clostridium perfringens str. 13 988432 NP_561108.2 CDS cbiM NC_003366.1 248808 249479 D catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 248808..249479 Clostridium perfringens str. 13 988433 NP_561109.1 CDS cbiN NC_003366.1 249479 249790 D periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN 249479..249790 Clostridium perfringens str. 13 988434 NP_561110.1 CDS cbiQ NC_003366.1 249837 250544 D similar to pir:H64435 cobalt transport protein Q homolog from Methanococcus jannaschii (268 aa); 34.2% identity in 225 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; cobalt ABC transporter permease 249837..250544 Clostridium perfringens str. 13 988435 NP_561111.1 CDS cbiO NC_003366.1 250559 251416 D with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 250559..251416 Clostridium perfringens str. 13 988436 NP_561112.1 CDS ptiB NC_003366.1 251886 253466 D similar to sp:PTIB_BACSU PTS SYSTEM, ARBUTIN-LIKE IIBC COMPONENT (PHOSPHOTRANSFERASE ENZYME II, BC COMPONENT) (EC 2.7.1.69) from Bacillus subtilis (527 aa); 60.7% identity in 527 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; PTS system arbutin-like transporter subunit IIBC 251886..253466 Clostridium perfringens str. 13 988437 NP_561113.1 CDS CPE0197 NC_003366.1 253730 254500 D similar to sp:YFIA_BACSU HYPOTHETICAL 29.3 KDA PROTEIN IN GLVG-GLVBC INTERGENIC REGION from Bacillus subtilis (254 aa); 40.2% identity in 254 aa overlap; hypothetical protein 253730..254500 Clostridium perfringens str. 13 988438 NP_561114.1 CDS CPE0198 NC_003366.1 254724 255224 D partially similar to sp:YFIA_BACSU HYPOTHETICAL 29.3 KDA PROTEIN IN GLVG-GLVBC INTERGENIC REGION from Bacillus subtilis (254 aa); 26.7% identity in 90 aa overlap; hypothetical protein 254724..255224 Clostridium perfringens str. 13 988439 NP_561115.1 CDS malH NC_003366.1 255480 256805 D similar to sp:MALH_FUSMR MALTOSE-6'-PHOSPHATE GLUCOSIDASE (EC 3.2.1.122) (6-PHOSPHO-ALPHA-D- GLUCOSIDASE) from Fusobacterium mortiferum (441 aa); 81.4% identity in 441 aa overlap; maltose-6'-phosphate glucosidase 255480..256805 Clostridium perfringens str. 13 988440 NP_561116.1 CDS CPE0200 NC_003366.1 257386 257547 D no significant homology.; hypothetical protein 257386..257547 Clostridium perfringens str. 13 988441 NP_561117.1 CDS CPE0201 NC_003366.1 257764 258627 R similar to gp:FMY12759_1 acid phosphatase from Chryseobacterium meningosepticum (267 aa); 42.3% identity in 234 aa overlap. N-terminal signal sequence was found by PSORT; 5'-nucleotidase complement(257764..258627) Clostridium perfringens str. 13 988442 NP_561118.1 CDS spoIIQ NC_003366.1 258849 260048 R similar to gpu:AP001519_115 cell wall-binding protein from Bacillus halodurans (461 aa); 32.4% identity in 336 aa overlap. N-terminal signal sequence was found by PSORT; cell wall-binding protein complement(258849..260048) Clostridium perfringens str. 13 988443 NP_561119.1 CDS CPE0203 NC_003366.1 260735 261391 D partially similar to N-terminal of pir:G64667 NA+/H+ antiporter from Helicobacter pylori (strain 26695) (383 aa); 28% identity in 150 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 260735..261391 Clostridium perfringens str. 13 988444 NP_561120.1 CDS CPE0204 NC_003366.1 267399 268028 D similar to gp:AF125164_20 acetyltransferase from Bacteroides fragilis (194 aa); 30.7% identity in 101 aa overlap; acetyltransferase 267399..268028 Clostridium perfringens str. 13 988449 NP_561121.1 CDS CPE0205 NC_003366.1 268495 268770 D similar to pir:E70718 hypothetical protein Rv0967 from Mycobacterium tuberculosis (strain H37RV) (119 aa); 34.9% identity in 83 aa overlap; hypothetical protein 268495..268770 Clostridium perfringens str. 13 988450 NP_561122.1 CDS CPE0206 NC_003366.1 270353 270934 D no significant homology.; hypothetical protein 270353..270934 Clostridium perfringens str. 13 988451 NP_561123.1 CDS CPE0207 NC_003366.1 271073 273448 R similar to pir:C72228 sensor histidine kinase HpkA from Thermotoga maritima (strain MSB8) (412 aa); 28.4% identity in 349 aa overlap. 8 transmembrane regions were found by PSORT.; two-component sensor histidine kinase complement(271073..273448) Clostridium perfringens str. 13 988452 NP_561124.1 CDS CPE0208 NC_003366.1 273815 274873 D similar to pir:S23349 hypothetical protein 17.4 from Salmonella choleraesuis (367 aa); 24.8% identity in 319 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; hypothetical protein 273815..274873 Clostridium perfringens str. 13 988453 NP_561125.1 CDS CPE0209 NC_003366.1 274974 275201 D no significant homology.; hypothetical protein 274974..275201 Clostridium perfringens str. 13 988454 NP_561126.1 CDS CPE0210 NC_003366.1 275341 276222 D no significant homology.; hypothetical protein 275341..276222 Clostridium perfringens str. 13 988455 NP_561127.1 CDS CPE0211 NC_003366.1 276250 278448 D partially similar to pir:F75103 probable purine NTPase PAB0812 from Pyrococcus abyssi (strain Orsay) (880 aa); 33.3% identity in 201 aa overlap; hypothetical protein 276250..278448 Clostridium perfringens str. 13 988456 NP_561128.1 CDS CPE0212 NC_003366.1 278930 279700 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 278930..279700 Clostridium perfringens str. 13 988457 NP_561129.1 CDS CPE0213 NC_003366.1 279879 280694 R similar to gpu:AE004134_7 conserved hypothetical protein from Vibrio cholerae (287 aa); 34.2% identity in 263 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein complement(279879..280694) Clostridium perfringens str. 13 988458 NP_561130.1 CDS CPE0214 NC_003366.1 281268 281912 R similar to sp:HO1_SYNY3 HEME OXYGENASE 1 (EC 1.14.99.3) from Synechocystis sp. (strain PCC 6803) (240 aa); 32.5% identity in 200 aa overlap; heme oxygenase complement(281268..281912) Clostridium perfringens str. 13 988459 NP_561131.1 CDS sbcD NC_003366.1 282313 283536 D similar to sp:SBCD_BACSU EXONUCLEASE SBCD HOMOLOG (FRAGMENT) from Bacillus subtilis (325 aa); 38.1% identity in 339 aa overlap; exonuclease 282313..283536 Clostridium perfringens str. 13 988460 NP_561132.1 CDS sbcC NC_003366.1 283514 287041 D similar to >gp:CPSBCC_1 sbcC gene product from Clostridium perfringens (140 aa); 91.4% identity in 140 aa overlap; exonuclease SbcC 283514..287041 Clostridium perfringens str. 13 988461 NP_561133.1 CDS ackA NC_003366.1 287446 288642 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 287446..288642 Clostridium perfringens str. 13 988462 NP_561134.1 CDS CPE0218 NC_003366.1 289079 289900 D similar to gpu:AE004132_1 DnaJ-related protein from Vibrio cholerae (284 aa); 27.9% identity in 208 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; DnaJ-like protein 289079..289900 Clostridium perfringens str. 13 988463 NP_561135.1 CDS CPE0219 NC_003366.1 290151 290909 R similar to C-terminal of gpu:AP001511_12 BH1123 gene product from Bacillus halodurans (526 aa); 34.7% identity in 101 aa overlap.Also similar to C-terminal of many regulatory proteins; AraC family transcriptional regulator complement(290151..290909) Clostridium perfringens str. 13 988464 NP_561136.1 CDS CPE0220 NC_003366.1 291056 293287 D similar to gpu:AP001518_129 BH3298 gene product from Bacillus halodurans (1071 aa); 24.4% identity in 439 aa overlap. Also some similarity to gp:AB012764_1 Chitinase A from Clostridium paraputrificum (832 aa). N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 291056..293287 Clostridium perfringens str. 13 988465 NP_561137.1 CDS CPE0221 NC_003366.1 293350 293997 D similar to gpu:AP001518_130 BH3299 gene product from Bacillus halodurans (221 aa); 20.3% identity in 153 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; iron transporter 293350..293997 Clostridium perfringens str. 13 988466 NP_561138.1 CDS CPE0222 NC_003366.1 293999 294562 D similar to gpu:AP001519_111 BH3596 gene product from Bacillus halodurans (187 aa); 30.2% identity in 126 aa overlap. N-terminal signal sequence was found by PSORT; sortase 293999..294562 Clostridium perfringens str. 13 988467 NP_561139.1 CDS CPE0223 NC_003366.1 294576 295463 D similar to gpu:AP001518_128 ferrichrome ABC transporter (ferrichrome-binding protein) from Bacillus halodurans (302 aa); 36.2% identity in 287 aa overlap; ferrichrome-binding protein; ferrichrome ABC transporter 294576..295463 Clostridium perfringens str. 13 988468 NP_561140.1 CDS CPE0224 NC_003366.1 295450 296436 D similar to gpu:AP001518_127 ferrichrome ABC transporter (permease) from Bacillus halodurans (328 aa); 35.6% identity in 298 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; permease; ferrichrome ABC transporter 295450..296436 Clostridium perfringens str. 13 988469 NP_561141.1 CDS fhuC NC_003366.1 296437 297216 D similar to gpu:AP001518_126 ferrichrome ABC transporter (ATP-binding protein) from Bacillus halodurans (256 aa); 48.4% identity in 250 aa overlap; ATP-binding protein; ferrichrome ABC transporter 296437..297216 Clostridium perfringens str. 13 988470 NP_561142.1 CDS CPE0226 NC_003366.1 297255 298985 D similar to sp:Y663_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN HI0663 from Haemophilus influenzae Rd (560 aa); 44.2% identity in 550 aa overlap. 6 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 297255..298985 Clostridium perfringens str. 13 988471 NP_561143.1 CDS CPE0227 NC_003366.1 298986 300674 D similar to sp:Y664_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN HI0664 from Haemophilus influenzae Rd (552 aa); 43.2% identity in 551 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 298986..300674 Clostridium perfringens str. 13 988472 NP_561144.1 CDS CPE0228 NC_003366.1 300661 301056 D no significant homology. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 300661..301056 Clostridium perfringens str. 13 988473 NP_561145.1 CDS CPE0229 NC_003366.1 301037 301336 D similar to prf:2511340D ygbA gene from Proteus mirabilis (75 aa); 54.4% identity in 57 aa overlap; hypothetical protein 301037..301336 Clostridium perfringens str. 13 988474 NP_561146.1 CDS CPE0230 NC_003366.1 301463 301648 D no significant homology.; (Fe-S)-binding protein 301463..301648 Clostridium perfringens str. 13 988475 NP_561147.1 CDS CPE0231 NC_003366.1 301943 303388 D can hydrolyze p-nitrophenyl sulfate; contains a specific cysteine that is converted into C{alpha]-formylglycine upon activation with the anaerobic sulfatase-maturase; arylsulfatase 301943..303388 Clostridium perfringens str. 13 988476 NP_561148.1 CDS glpT NC_003366.1 303546 304883 R similar to sp:GLPT_BACSU GLYCEROL-3-PHOSPHATE TRANSPORTER (G-3-P TRANSPORTER) (G-3-P PERMEASE) from Bacillus subtilis (444 aa); 48.5% identity in 412 aa overlap. 8 transmembrane regions were found by PSORT.; glycerol-3-phosphate transporter complement(303546..304883) Clostridium perfringens str. 13 988477 NP_561149.1 CDS CPE0233 NC_003366.1 305084 306103 R similar to prf:2223232C Fe-binding protein from Actinobacillus pleuropneumoniae (346 aa); 28.5% identity in 291 aa overlap. N-terminal signal sequence was found by PSORT; periplasmic iron-compound-binding protein; iron(III) ABC transporter complement(305084..306103) Clostridium perfringens str. 13 988478 NP_561150.1 CDS CPE0234 NC_003366.1 306084 306872 R no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein complement(306084..306872) Clostridium perfringens str. 13 988479 NP_561151.1 CDS CPE0235 NC_003366.1 306865 308295 R similar to gp:AB028738_5 Sensor histidine kinase VirJ from Clostridium perfringens (471 aa); 30.3% identity in 413 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; sensor histidine kinase complement(306865..308295) Clostridium perfringens str. 13 988480 NP_561152.1 CDS CPE0236 NC_003366.1 308285 308956 R similar to gp:CAU58131_2 PhoP from Clostridium acetobutylicum (217 aa); 38.3% identity in 222 aa overlap. 1 transmembrane region was found by PSORT; DNA-binding response regulator complement(308285..308956) Clostridium perfringens str. 13 988481 NP_561153.1 CDS napA NC_003366.1 309248 310447 D similar to prf:2210362A grmA gene from Bacillus megaterium (386 aa); 36.4% identity in 357 aa overlap.Also similar to many bacterial Na+/H+ antiporters. N-terminal signal sequence and 12 transmembrane regions were found by PSORT.; Na+/H+ antiporter 309248..310447 Clostridium perfringens str. 13 988482 NP_561154.1 CDS CPE0238 NC_003366.1 310700 311227 D no significant homology.; hypothetical protein 310700..311227 Clostridium perfringens str. 13 988483 NP_561155.1 CDS CPE0239 NC_003366.1 311601 312377 D no significant homology.; hypothetical protein 311601..312377 Clostridium perfringens str. 13 988485 NP_561156.1 CDS CPE0240 NC_003366.1 312795 314225 D partially similar to pir:T28317 ORF MSV156 hypothetical protein from Melanoplus sanguinipes entomopoxvirus (1127 aa); 24.2% identity in 293 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 312795..314225 Clostridium perfringens str. 13 988486 NP_561157.1 CDS CPE0241 NC_003366.1 314228 314920 D similar to C-terminal half of pir:F81407 probable periplasmic protein Cj0599 from Campylobacter jejuni (strain NCTC 11168) (317 aa); 26% identity in 181 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 314228..314920 Clostridium perfringens str. 13 988487 NP_561158.1 CDS CPE0242 NC_003366.1 315018 315338 R similar to prf:2503398E divercin immunity protein from Carnobacterium divergens (97 aa); 64.3% identity in 98 aa overlap; immunity protein complement(315018..315338) Clostridium perfringens str. 13 988488 NP_561159.1 CDS CPE0243 NC_003366.1 315473 315721 D no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 315473..315721 Clostridium perfringens str. 13 988489 NP_561160.1 CDS CPE0244 NC_003366.1 315728 316504 D similar to C-terminal of pir:S76167 hypothetical protein from Synechocystis sp. (strain PCC 6803) (529 aa); 34.3% identity in 67 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; hypothetical protein 315728..316504 Clostridium perfringens str. 13 988490 NP_561161.1 CDS CPE0245 NC_003366.1 316595 318922 R similar to C-terminal half of gp:BCE243712_8 YkoW protein from Bacillus cereus (892 aa); 32.5% identity in 425 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; diguanylate cyclase complement(316595..318922) Clostridium perfringens str. 13 988491 NP_561162.1 CDS CPE0246 NC_003366.1 319177 320445 D partially similar to sp:Y798_METJA HYPOTHETICAL PROTEIN MJ0798 from Methanococcus jannaschii (334 aa); 29.1% identity in 134 aa overlap; DnaJ domain-containing protein 319177..320445 Clostridium perfringens str. 13 988492 NP_561163.1 CDS grpE NC_003366.1 320463 321065 D similar to sp:GRPE_FRATU GRPE PROTEIN (HSP-70 COFACTOR) from Francisella tularensis (195 aa); 35.2% identity in 105 aa overlap; heat shock protein GrpE 320463..321065 Clostridium perfringens str. 13 988493 NP_561164.1 CDS dnaK NC_003366.1 321053 322780 D similar to pir:C72385 dnaK-type molecular chaperone dnaK from Thermotoga maritima (strain MSB8) (596 aa); 43.3% identity in 563 aa overlap; molecular chaperone DnaK 321053..322780 Clostridium perfringens str. 13 988494 NP_561165.1 CDS CPE0249 NC_003366.1 322798 323532 D partially similar to prf:2123314A SPR3 gene from Saccharomyces cerevisiae (512 aa); 26.7% identity in 161 aa overlap; hypothetical protein 322798..323532 Clostridium perfringens str. 13 988495 NP_561166.1 CDS CPE0250 NC_003366.1 323804 324577 D similar to prf:2315479F epsC gene from Lactococcus lactis (254 aa); 37.4% identity in 235 aa overlap; EpsC; capsular polysaccharide biosynthesis protein 323804..324577 Clostridium perfringens str. 13 988496 NP_561167.1 CDS CPE0251 NC_003366.1 324892 326214 D similar to pir:H82985 hypothetical protein from Pseudomonas aeruginosa (423 aa); 26.6% identity in 331 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 324892..326214 Clostridium perfringens str. 13 988497 NP_561168.1 CDS CPE0252 NC_003366.1 326287 326733 R similar to N-terminal of sp:DIVB_BACSU DIVISION INITIATION PROTEIN (CELL DIVISION AND SPORULATION PROTEIN) from Bacillus subtilis (263 aa); 25.2% identity in 115 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(326287..326733) Clostridium perfringens str. 13 988498 NP_561169.1 CDS CPE0253 NC_003366.1 326853 327056 D no significant homology.; hypothetical protein 326853..327056 Clostridium perfringens str. 13 988499 NP_561170.1 CDS CPE0254 NC_003366.1 327069 327317 D no significant homology.; hypothetical protein 327069..327317 Clostridium perfringens str. 13 988500 NP_561171.1 CDS CPE0255 NC_003366.1 327402 327716 R no significant homology.; hypothetical protein complement(327402..327716) Clostridium perfringens str. 13 988501 NP_561172.1 CDS CPE0256 NC_003366.1 327853 328587 R Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase complement(327853..328587) Clostridium perfringens str. 13 988502 NP_561173.1 CDS CPE0257 NC_003366.1 328757 329080 D no significant homology. 2 transmembrane regions were found by PSORT.; hypothetical protein 328757..329080 Clostridium perfringens str. 13 988503 NP_561174.1 CDS CPE0258 NC_003366.1 329114 329323 D similar to pir:H75270 transcription regulator, PbsX family from Deinococcus radiodurans (strain R1) (64 aa); 40% identity in 60 aa overlap; transcriptional regulator 329114..329323 Clostridium perfringens str. 13 988504 NP_561175.1 CDS CPE0259 NC_003366.1 329698 330204 D similar to gp:AP001511_272 transcriptional factor from Bacillus halodurans (201 aa); 22.5% identity in 173 aa overlap; CarD family transcriptional regulator 329698..330204 Clostridium perfringens str. 13 988505 NP_561176.1 CDS CPE0260 NC_003366.1 330592 331728 D similar to gpu:AP001516_112 BH2683 gene product from Bacillus halodurans (379 aa); 39% identity in 272 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; mechanosensitive ion channel protein MscS 330592..331728 Clostridium perfringens str. 13 988506 NP_561177.1 CDS CPE0261 NC_003366.1 331725 332348 D similar to gpu:AE004159_7 copper homeostasis protein from Vibrio cholerae (254 aa); 38.2% identity in 199 aa overlap; copper homeostasis protein 331725..332348 Clostridium perfringens str. 13 988507 NP_561178.1 CDS CPE0262 NC_003366.1 332724 332924 D no significant homology. 2 transmembrane regions were found by PSORT.; hypothetical protein 332724..332924 Clostridium perfringens str. 13 988508 NP_561179.1 CDS CPE0263 NC_003366.1 333045 334364 R no significant homology. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; hypothetical protein complement(333045..334364) Clostridium perfringens str. 13 988509 NP_561180.1 CDS CPE0264 NC_003366.1 334577 334873 R no significant homology.; hypothetical protein complement(334577..334873) Clostridium perfringens str. 13 988510 NP_561181.1 CDS CPE0265 NC_003366.1 335081 335758 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(335081..335758) Clostridium perfringens str. 13 988511 NP_561182.1 CDS CPE0266 NC_003366.1 336095 338632 D similar to sp:YBBD_BACSU HYPOTHETICAL 70.6 KDA LIPOPROTEIN IN FEUA-SIGW INTERGENIC REGION PRECURSOR (ORF1) from Bacillus subtilis (642 aa); 46.4% identity in 619 aa overlap. Also similar to gp:AP001509_113 beta-hexosamidase A precursor from Bacillus halodurans. N-terminal signal sequence and 1 transmembrane region were found by PSORT; beta-hexosamidase A 336095..338632 Clostridium perfringens str. 13 988512 NP_561183.1 CDS CPE0267 NC_003366.1 344672 345139 R similar to gpu:AP001510_123 bacterioferritin comigratory protein from Bacillus halodurans (154 aa); 61.2% identity in 147 aa overlap; bacterioferritin comigratory protein complement(344672..345139) Clostridium perfringens str. 13 988519 NP_561184.1 CDS CPE0268 NC_003366.1 345779 346525 D similar to gpu:AP001511_66 protein secretion (post-translocation chaperonin) from Bacillus halodurans (333 aa); 31.5% identity in 235 aa overlap; hypothetical protein 345779..346525 Clostridium perfringens str. 13 988520 NP_561185.1 CDS CPE0269 NC_003366.1 346988 347800 D similar to gp:AF071085_12 ABC transporter permease from Enterococcus faecalis (264 aa); 32.7% identity in 269 aa overlap. 6 transmembrane regions were found by PSORT.; permease; ABC transporter 346988..347800 Clostridium perfringens str. 13 988521 NP_561186.1 CDS CPE0270 NC_003366.1 347818 348990 D similar to gp:AB030032_11 ABC transporter from Actinobacillus actinomycetemcomitans (398 aa); 43.7% identity in 387 aa overlap; ATP-binding protein; ABC transporter 347818..348990 Clostridium perfringens str. 13 988522 NP_561187.1 CDS CPE0271 NC_003366.1 349004 350287 D similar to pir:C75592 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (415 aa); 27.1% identity in 251 aa overlap; hypothetical protein 349004..350287 Clostridium perfringens str. 13 988523 NP_561188.1 CDS CPE0272 NC_003366.1 350306 351541 D similar to prf:2318308D cps19bP gene from Streptococcus pneumoniae (360 aa); 30.5% identity in 256 aa overlap; hypothetical protein 350306..351541 Clostridium perfringens str. 13 988524 NP_561189.1 CDS CPE0273 NC_003366.1 351555 352736 D similar to gp:AB030032_11 ABC transporter from Actinobacillus actinomycetemcomitans (398 aa); 40.1% identity in 389 aa overlap; ATP-binding protein; ABC transporter 351555..352736 Clostridium perfringens str. 13 988525 NP_561190.1 CDS CPE0274 NC_003366.1 352851 354284 D similar to prf:2318308D cps19bP gene from Streptococcus pneumoniae (360 aa); 26.6% identity in 361 aa overlap; hypothetical protein 352851..354284 Clostridium perfringens str. 13 988526 NP_561191.1 CDS CPE0275 NC_003366.1 354420 355073 R similar to gp:AE003576_10 Gs1l gene product from Drosophila melanogaster (231 aa); 29.2% identity in 209 aa overlap; haloacid dehalogenase complement(354420..355073) Clostridium perfringens str. 13 988527 NP_561192.1 CDS CPE0276 NC_003366.1 355156 356505 R partially similar to pir:G72256 hydrogenase (EC 1.18.99.1) (Fe) large chain from Thermotoga maritima (strain MSB8) (645 aa); 31.3% identity in 240 aa overlap; hydrogenase complement(355156..356505) Clostridium perfringens str. 13 988528 NP_561193.1 CDS CPE0277 NC_003366.1 357202 357492 D no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 357202..357492 Clostridium perfringens str. 13 988530 NP_561194.1 CDS CPE0278 NC_003366.1 357677 358975 D similar to gp:LMO250194_1 P45 from Listeria monocytogenes (401 aa); 26% identity in 388 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 357677..358975 Clostridium perfringens str. 13 988531 NP_561195.1 CDS CPE0279 NC_003366.1 359149 359919 D similar to sp:YABB_BACSU HYPOTHETICAL 28.3 KDA PROTEIN IN XPAC-ABRB INTERGENIC REGION from Bacillus subtilis (247 aa); 43.3% identity in 240 aa overlap; hypothetical protein 359149..359919 Clostridium perfringens str. 13 988532 NP_561196.1 CDS CPE0280 NC_003366.1 359922 360764 D similar to gpu:AP001507_49 BH0049 gene product from Bacillus halodurans (289 aa); 52.4% identity in 271 aa overlap; tetrapyrrole methylase 359922..360764 Clostridium perfringens str. 13 988533 NP_561197.1 CDS CPE0281 NC_003366.1 361080 361319 R similar to gpu:AP001507_50 transcriptional pleiotropic regulator of transition state genes from Bacillus halodurans (96 aa); 76.7% identity in 60 aa overlap; AbrB family transcriptional regulator complement(361080..361319) Clostridium perfringens str. 13 988534 NP_561198.1 CDS CPE0282 NC_003366.1 362011 362610 D no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 362011..362610 Clostridium perfringens str. 13 988535 NP_561199.1 CDS CPE0283 NC_003366.1 362646 363521 R similar to sp:LAXC_LACLA LACX PROTEIN, CHROMOSOMAL from Lactococcus lactis (299 aa); 33% identity in 288 aa overlap; hypothetical protein complement(362646..363521) Clostridium perfringens str. 13 988536 NP_561200.1 CDS CPE0284 NC_003366.1 363632 364654 R similar to gp:EFA276231_1 PSR protein from Enterococcus faecalis (390 aa); 29.3% identity in 324 aa overlap. 1 transmembrane region was found by PSORT; transcriptional regulator complement(363632..364654) Clostridium perfringens str. 13 988537 NP_561201.1 CDS CPE0285 NC_003366.1 364830 365681 D similar to prf:2516401CC yfkH gene from Bacillus cereus (289 aa); 39.4% identity in 249 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 364830..365681 Clostridium perfringens str. 13 988538 NP_561202.1 CDS galE NC_003366.1 365742 366728 R similar to gpu:AP001510_283 UDP-glucose 4-epimerase from Bacillus halodurans (334 aa); 63.5% identity in 326 aa overlap; UDP-glucose 4-epimerase complement(365742..366728) Clostridium perfringens str. 13 988539 NP_561203.1 CDS CPE0287 NC_003366.1 366883 367227 D similar to gp:BA1242593_64 SSB protein from Bacteriophage A118 (160 aa); 45% identity in 111 aa overlap; SSB; phage-related single-strand DNA binding protein 366883..367227 Clostridium perfringens str. 13 988540 NP_561204.1 CDS CPE0288 NC_003366.1 367303 368424 R similar to gp:RCAFDXC_3 ORFU1 product, potential FMN-protein from Rhodobacter capsulatus (435 aa); 42.6% identity in 387 aa overlap; flavoprotein complement(367303..368424) Clostridium perfringens str. 13 988541 NP_561205.1 CDS CPE0289 NC_003366.1 369002 372418 R similar to gpu:AP001509_223 endo-beta-N-acetylglucosaminidase from Bacillus halodurans (878 aa); 45% identity in 845 aa overlap. N-terminal signal sequence was found by PSORT; endo-beta-N-acetylglucosaminidase complement(369002..372418) Clostridium perfringens str. 13 988542 NP_561206.1 CDS CPE0290 NC_003366.1 372789 373094 D no significant homology.; hypothetical protein 372789..373094 Clostridium perfringens str. 13 988543 NP_561207.1 CDS acpS NC_003366.1 373143 373544 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 373143..373544 Clostridium perfringens str. 13 988544 NP_561208.1 CDS CPE0292 NC_003366.1 373531 375030 D similar to pir:C72317 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (490 aa); 37.6% identity in 474 aa overlap; carbohydrate kinase 373531..375030 Clostridium perfringens str. 13 988545 NP_561209.1 CDS CPE0293 NC_003366.1 375091 375684 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 375091..375684 Clostridium perfringens str. 13 988546 NP_561210.1 CDS CPE0294 NC_003366.1 375931 376173 D no significant homology.; hypothetical protein 375931..376173 Clostridium perfringens str. 13 988547 NP_561211.1 CDS CPE0295 NC_003366.1 376179 376532 D similar to gpu:AP001508_245 BH0522 gene product from Bacillus halodurans (116 aa); 73.9% identity in 111 aa overlap; PemK family protein 376179..376532 Clostridium perfringens str. 13 988548 NP_561212.1 CDS tktN NC_003366.1 376970 377794 D similar to sp:TKTN_METJA TRANSKETOLASE N-TERMINAL SECTION (EC 2.2.1.1) (TK) from Methanococcus jannaschii (274 aa); 57.7% identity in 267 aa overlap; transketolase 376970..377794 Clostridium perfringens str. 13 988549 NP_561213.1 CDS tktC NC_003366.1 377794 378738 D similar to sp:TKTC_METJA TRANSKETOLASE C-TERMINAL SECTION (EC 2.2.1.1) (TK) from Methanococcus jannaschii (316 aa); 51.2% identity in 303 aa overlap. 1 transmembrane region was found by PSORT; transketolase 377794..378738 Clostridium perfringens str. 13 988550 NP_561214.1 CDS CPE0298 NC_003366.1 378965 379822 D similar to pir:G72409 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (283 aa); 37% identity in 281 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 378965..379822 Clostridium perfringens str. 13 988551 NP_561215.1 CDS ftsE NC_003366.1 380028 380714 D similar to pir:D69627 cell-division ATP-binding protein ftsE from Bacillus subtilis (228 aa); 60.7% identity in 224 aa overlap; cell-division ATP-binding protein 380028..380714 Clostridium perfringens str. 13 988552 NP_561216.1 CDS ftsX NC_003366.1 380680 381612 D similar to sp:FTSX_BACSU CELL DIVISION PROTEIN FTSX HOMOLOG from Bacillus subtilis (296 aa); 28.3% identity in 251 aa overlap. 4 transmembrane regions were found by PSORT.; cell-division protein 380680..381612 Clostridium perfringens str. 13 988553 NP_561217.1 CDS CPE0301 NC_003366.1 381701 382987 D similar to pir:B69610 carboxy-terminal processing proteinase ctpA (EC 3.4.99.-) from Bacillus subtilis (466 aa); 41% identity in 376 aa overlap. N-terminal signal sequence was found by PSORT.; carboxyl-terminal protease 381701..382987 Clostridium perfringens str. 13 988554 NP_561218.1 CDS CPE0302 NC_003366.1 383010 384290 D no significant homology. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; hypothetical protein 383010..384290 Clostridium perfringens str. 13 988555 NP_561219.1 CDS uvrB NC_003366.1 384378 386357 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 384378..386357 Clostridium perfringens str. 13 988556 NP_561220.1 CDS CPE0304 NC_003366.1 386623 387474 D similar to sp:DEGV_BACSU DEGV PROTEIN from Bacillus subtilis (281 aa); 32.3% identity in 279 aa overlap. 1 transmembrane region was found by PSORT; degV family protein 386623..387474 Clostridium perfringens str. 13 988557 NP_561221.1 CDS CPE0305 NC_003366.1 387705 388430 D similar to pir:B72334 ABC transporter, ATP-binding protein from Thermotoga maritima (strain MSB8) (260 aa); 42.9% identity in 238 aa overlap; ATP-binding protein; ABC transporter 387705..388430 Clostridium perfringens str. 13 988558 NP_561222.1 CDS CPE0306 NC_003366.1 388423 390021 D partially similar to gp:BSP250862_5 MrsE protein from Bacillus sp. HIL-Y85/54728 (244 aa); 27.9% identity in 183 aa overlap. 13 transmembrane regions were found by PSORT.; hypothetical protein 388423..390021 Clostridium perfringens str. 13 988559 NP_561223.1 CDS CPE0307 NC_003366.1 390238 391242 D similar to pir:T43794 probable lipase lipA from Clostridium perfringens (311 aa); 23.1% identity in 260 aa overlap. N-terminal signal sequence was found by PSORT; lipase 390238..391242 Clostridium perfringens str. 13 988560 NP_561224.1 CDS CPE0308 NC_003366.1 391401 392966 D similar to N-terminal of sp:MUTS_THEMA DNA MISMATCH REPAIR PROTEIN MUTS from Thermotoga maritima (793 aa); 32.2% identity in 267 aa overlap. 2 transmembrane regions were found by PSORT.; MutS domain-containing protein 391401..392966 Clostridium perfringens str. 13 988561 NP_561225.1 CDS CPE0309 NC_003366.1 392981 393667 D similar to sp:YCBG_BACSU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN GLTP-CWLJ INTERGENIC REGION (ORF6). from Bacillus subtilis (233 aa); 30.8% identity in 224 aa overlap; GntR family; transcriptional regulator 392981..393667 Clostridium perfringens str. 13 988562 NP_561226.1 CDS CPE0310 NC_003366.1 393902 395425 D similar to gp:SILCT_2 lactate premease from Streptococcus iniae (474 aa); 49.5% identity in 416 aa overlap. N-terminal signal sequence and 13 transmembrane regions were found by PSORT.; L-lactate permease 393902..395425 Clostridium perfringens str. 13 988563 NP_561227.1 CDS etfB NC_003366.1 395519 396307 D similar to sp:ETFB_CLOTS ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT (BETA-ETF) (ELECTRON TRANSFER FLAVOPROTEIN SMALL SUBUNIT) (ETFSS) from Clostridium thermosaccharolyticum (260 aa); 44.9% identity in 256 aa overlap; electron transfer flavoprotein subunit beta 395519..396307 Clostridium perfringens str. 13 988564 NP_561228.1 CDS eftA NC_003366.1 396320 397513 D similar to sp:ETFA_CLOTS ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT (ALPHA-ETF) (ELECTRON TRANSFER FLAVOPROTEIN LARGE SUBUNIT) (ETFLS) from Clostridium thermosaccharolyticum (330 aa); 49.1% identity in 212 aa overlap. 1 transmembrane region was found by PSORT; electron-transfer flavoprotein alpha-subunit 396320..397513 Clostridium perfringens str. 13 988565 NP_561229.1 CDS CPE0313 NC_003366.1 397515 398915 D similar to pir:D69984 glycolate oxidase subunit homolog ysfC from Bacillus subtilis (470 aa); 39.9% identity in 431 aa overlap. 2 transmembrane regions were found by PSORT.; glycolate oxidase subunit 397515..398915 Clostridium perfringens str. 13 988566 NP_561230.1 CDS CPE0314 NC_003366.1 398998 399396 R no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(398998..399396) Clostridium perfringens str. 13 988567 NP_561231.1 CDS sipS NC_003366.1 399764 400273 D similar to sp:LEP_STAAU SIGNAL PEPTIDASE IB (EC 3.4.21.89) (SPASE IB) (LEADER PEPTIDASE IB) from Staphylococcus aureus (191 aa); 40% identity in 165 aa overlap. N-terminal signal sequence was found by PSORT; type I signal peptidase 399764..400273 Clostridium perfringens str. 13 988568 NP_561232.1 CDS CPE0316 NC_003366.1 400516 401295 R similar to gpu:AP001510_1 transcriptional repressor from Bacillus halodurans (251 aa); 32.3% identity in 220 aa overlap; transcriptional regulator complement(400516..401295) Clostridium perfringens str. 13 988569 NP_561233.1 CDS fucK NC_003366.1 401487 402890 D similar to gpu:AP001512_138 rhamnulokinase (EC 2.7.1.5) from Bacillus halodurans (467 aa); 43.6% identity in 463 aa overlap; rhamnulokinase 401487..402890 Clostridium perfringens str. 13 988570 NP_561234.1 CDS fucI NC_003366.1 402971 404758 D catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 402971..404758 Clostridium perfringens str. 13 988571 NP_561235.1 CDS fucA NC_003366.1 404788 405444 D catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase 404788..405444 Clostridium perfringens str. 13 988572 NP_561236.1 CDS CPE0320 NC_003366.1 405449 405886 D similar to N-terminal of gp:AF130465_1 mannose-specific phosphotransferase system component IIAB from Streptococcus salivarius (330 aa); 34.7% identity in 98 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 405449..405886 Clostridium perfringens str. 13 988573 NP_561237.1 CDS CPE0321 NC_003366.1 405877 406350 D similar to gp:AF129168_5 EIIB sorbose-PTS homolog from Lactobacillus casei (164 aa); 38.9% identity in 157 aa overlap; mannose-specific component IIAB; PTS system protein 405877..406350 Clostridium perfringens str. 13 988574 NP_561238.1 CDS CPE0322 NC_003366.1 406367 407143 D similar to sp:PTNC_ECOLI PTS SYSTEM, MANNOSE-SPECIFIC IIC COMPONENT (EIIC-MAN) (MANNOSE- PERMEASE IIC COMPONENT) (PHOSPHOTRANSFERASE ENZYME II, C COMPONENT) (EII-P-MAN) from Escherichia coli (266 aa); 33.5% identity in 239 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; mannose-specific component IIC; PTS system protein 406367..407143 Clostridium perfringens str. 13 988575 NP_561239.1 CDS CPE0323 NC_003366.1 407140 407943 D similar to gp:AF130465_3 mannose-specific phosphotransferase system component IID from Streptococcus salivarius (303 aa); 37% identity in 254 aa overlap. 5 transmembrane regions were found by PSORT.; mannose-specific component IID; PTS system protein 407140..407943 Clostridium perfringens str. 13 988576 NP_561240.1 CDS CPE0324 NC_003366.1 408080 409396 D similar to pir:T36467 probable glycosyl hydrolase from Streptomyces coelicolor (423 aa); 34% identity in 332 aa overlap; glycosyl hydrolase 408080..409396 Clostridium perfringens str. 13 988577 NP_561241.1 CDS CPE0325 NC_003366.1 409414 411303 D partially similar to pir:T36462 hypothetical protein SCF85.02 from Streptomyces coelicolor (499 aa); 33.3% identity in 78 aa overlap; hypothetical protein 409414..411303 Clostridium perfringens str. 13 988578 NP_561242.1 CDS lacA NC_003366.1 411556 411984 D catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization; galactose-6-phosphate isomerase subunit LacA 411556..411984 Clostridium perfringens str. 13 988579 NP_561243.1 CDS lacB NC_003366.1 412020 412535 D catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; galactose-6-phosphate isomerase subunit LacB 412020..412535 Clostridium perfringens str. 13 988580 NP_561244.1 CDS lacC NC_003366.1 412552 413484 D similar to sp:LACC_STAAU TAGATOSE-6-PHOSPHATE KINASE (EC 2.7.1.144) (PHOSPHOTAGATOKINASE) from Staphylococcus aureus (310 aa); 56.8% identity in 310 aa overlap; tagatose-6-phosphate kinase 412552..413484 Clostridium perfringens str. 13 988581 NP_561245.1 CDS CPE0329 NC_003366.1 413725 416112 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 413725..416112 Clostridium perfringens str. 13 988582 NP_561246.1 CDS CPE0330 NC_003366.1 416323 416703 R similar to pir:C69850 hypothetical protein yjgA from Bacillus subtilis (132 aa); 54.2% identity in 107 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(416323..416703) Clostridium perfringens str. 13 988583 NP_561247.1 CDS CPE0331 NC_003366.1 417022 417696 D partially similar to pir:S32215 hypothetical protein 1 from Bacillus megaterium (226 aa); 54.4% identity in 57 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 417022..417696 Clostridium perfringens str. 13 988584 NP_561248.1 CDS CPE0332 NC_003366.1 417887 418510 R similar to sp:APL_LACLC ALKALINE PHOSPHATASE LIKE PROTEIN from Lactococcus lactis (242 aa); 32.5% identity in 169 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; DedA family protein complement(417887..418510) Clostridium perfringens str. 13 988585 NP_561249.1 CDS CPE0333 NC_003366.1 418607 421264 R similar to pir:H69877 calcium-transporting ATPase homolog yloB from Bacillus subtilis (890 aa); 42.1% identity in 837 aa overlap. 9 transmembrane regions were found by PSORT.; cation-transporting ATPase complement(418607..421264) Clostridium perfringens str. 13 988586 NP_561250.1 CDS CPE0334 NC_003366.1 422038 422601 D some similarity to gpu:AB018117_28 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQL5 from Arabidopsis thaliana (268 aa); 37.6% identity in 125 aa overlap; hypothetical protein 422038..422601 Clostridium perfringens str. 13 988587 NP_561251.1 CDS xpt NC_003366.1 423159 423731 D Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 423159..423731 Clostridium perfringens str. 13 988588 NP_561252.1 CDS CPE0336 NC_003366.1 424217 425149 D similar to pir:D71226 hypothetical protein PH0070 from Pyrococcus horikoshii (275 aa); 30.4% identity in 273 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein 424217..425149 Clostridium perfringens str. 13 988589 NP_561253.1 CDS CPE0337 NC_003366.1 425340 426722 D similar to gp:BCE237785_5 amino acid transporter from Bacillus cereus (471 aa); 44.1% identity in 454 aa overlap. 11 transmembrane regions were found by PSORT.; amino acid transporter 425340..426722 Clostridium perfringens str. 13 988590 NP_561254.1 CDS CPE0338 NC_003366.1 426876 428180 R partially similar to pir:S74882 hypothetical protein sll1151 from Synechocystis sp. (strain PCC 6803) (605 aa); 30.4% identity in 227 aa overlap. 7 transmembrane regions were found by PSORT.; hypothetical protein complement(426876..428180) Clostridium perfringens str. 13 988591 NP_561255.1 CDS tldD NC_003366.1 428452 429837 D similar to pir:D72342 tldD protein from Thermotoga maritima (strain MSB8) (499 aa); 51.6% identity in 467 aa overlap; TldD protein 428452..429837 Clostridium perfringens str. 13 988592 NP_561256.1 CDS pmbA NC_003366.1 429853 431202 D similar to pir:E70461 pmbA protein from Synechocystis sp. (strain PCC 6803) (441 aa); 34.3% identity in 428 aa overlap; TldD/PmbA family protein 429853..431202 Clostridium perfringens str. 13 988593 NP_561257.1 CDS CPE0341 NC_003366.1 431519 433105 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 431519..433105 Clostridium perfringens str. 13 988594 NP_561258.1 CDS CPE0342 NC_003366.1 433417 433899 D similar to gp:MAV011838_4 methylated-DNA-protein-cystein methyltransferase from Mycobacterium avium subsp. paratuberculosis (165 aa); 46.6% identity in 133 aa overlap; methylated-DNA-protein-cystein methyltransferase 433417..433899 Clostridium perfringens str. 13 988595 NP_561259.1 CDS recQ NC_003366.1 433948 436122 D similar to pir:F69901 DNA helicase recQ from Bacillus subtilis (591 aa); 48.1% identity in 590 aa overlap. 1 transmembrane region was found by PSORT; ATP-dependent DNA helicase RecQ 433948..436122 Clostridium perfringens str. 13 988596 NP_561260.1 CDS CPE0344 NC_003366.1 436353 437150 D similar to gpu:AP001513_52 BH1779 gene product from Bacillus halodurans (287 aa); 36.9% identity in 252 aa overlap; hypothetical protein 436353..437150 Clostridium perfringens str. 13 988597 NP_561261.1 CDS CPE0345 NC_003366.1 437275 438732 D similar to gpu:AE004241_1 conserved hypothetical protein from Vibrio cholerae (458 aa); 29.3% identity in 444 aa overlap; hypothetical protein 437275..438732 Clostridium perfringens str. 13 988598 NP_561262.1 CDS CPE0346 NC_003366.1 438898 439647 D similar to pir:C69661 transcription activator of multidrug-efflux transporter genes mta from Bacillus subtilis (257 aa); 44.3% identity in 246 aa overlap; transcriptional regulator 438898..439647 Clostridium perfringens str. 13 988599 NP_561263.1 CDS CPE0347 NC_003366.1 439781 440452 R similar to sp:YEIL_ECOLI HYPOTHETICAL 25.3 KDA PROTEIN IN NFO-FRUA INTERGENIC REGION from Escherichia coli (219 aa); 26.9% identity in 201 aa overlap. Also similar to prf:2508375B FNR-like protein from Lactococcus lactis and many transcriptional regulators; transcriptional regulator complement(439781..440452) Clostridium perfringens str. 13 988600 NP_561264.1 CDS uvrA NC_003366.1 441396 444215 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 441396..444215 Clostridium perfringens str. 13 988601 NP_561265.1 CDS CPE0349 NC_003366.1 444550 444984 D similar to pir:A70700 hypothetical protein Rv0019c from Mycobacterium tuberculosis (strain H37RV) (155 aa); 31.8% identity in 88 aa overlap. N-terminal signal sequence was found by PSORT; FHA domain-containing protein 444550..444984 Clostridium perfringens str. 13 988602 NP_561266.1 CDS ftsW NC_003366.1 444998 446227 D similar to sp:FTSW_MYCTU PROBABLE CELL DIVISION PROTEIN FTSW from Mycobacterium tuberculosis (469 aa); 35.6% identity in 354 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; FtsW/RodA/SpoVE family cell cycle protein 444998..446227 Clostridium perfringens str. 13 988603 NP_561267.1 CDS CPE0351 NC_003366.1 446228 447691 D similar to pir:T36716 probable penicillin-binding protein from Streptomyces coelicolor (490 aa); 32.8% identity in 473 aa overlap. N-terminal signal sequence was found by PSORT; penicillin-binding protein 446228..447691 Clostridium perfringens str. 13 988604 NP_561268.1 CDS uvrC NC_003366.1 447848 449710 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 447848..449710 Clostridium perfringens str. 13 988605 NP_561269.1 CDS murB NC_003366.1 449859 450773 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 449859..450773 Clostridium perfringens str. 13 988606 NP_561270.1 CDS CPE0354 NC_003366.1 451013 451897 D similar to gpu:AP001519_84 BH3569 gene product from Bacillus halodurans (295 aa); 50.9% identity in 291 aa overlap; hypothetical protein 451013..451897 Clostridium perfringens str. 13 988607 NP_561271.1 CDS CPE0355 NC_003366.1 451894 453240 D similar to sp:YAMB_THETU HYPOTHETICAL 35.6 KDA PROTEIN IN AMYB 5'REGION (ORF1) from Thermoanaerobacterium thermosulfurigenes (323 aa); 55.7% identity in 300 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 451894..453240 Clostridium perfringens str. 13 988608 NP_561272.1 CDS CPE0356 NC_003366.1 453243 454193 D similar to gp:SAY14324_4 Staphylococcus aureus partial ORF292 and ORF271, ORF331 and ORF314 from Staphylococcus aureus (314 aa); 46.8% identity in 314 aa overlap; hypothetical protein 453243..454193 Clostridium perfringens str. 13 988609 NP_561273.1 CDS CPE0357 NC_003366.1 454367 454921 D similar to C-terminal of prf:1711414A USO1 gene from Saccharomyces cerevisiae (1790 aa); 29.7% identity in 148 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 454367..454921 Clostridium perfringens str. 13 988610 NP_561274.1 CDS CPE0358 NC_003366.1 455050 456294 R no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein complement(455050..456294) Clostridium perfringens str. 13 988611 NP_561275.1 CDS CPE0359 NC_003366.1 456308 456844 R similar to gpu:AP001509_58 RNA polymerase ECF-type sigma factor from Bacillus halodurans (177 aa); 30.3% identity in 142 aa overlap; RNA polymerase ECF-type sigma factor complement(456308..456844) Clostridium perfringens str. 13 988612 NP_561276.1 CDS dnaE NC_003366.1 457313 460891 D catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE 457313..460891 Clostridium perfringens str. 13 988613 NP_561277.1 CDS pfkA NC_003366.1 461602 462561 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 461602..462561 Clostridium perfringens str. 13 988614 NP_561278.1 CDS pykA NC_003366.1 462655 464058 D similar to sp:KPYK_BACSU PYRUVATE KINASE (EC 2.7.1.40) (PK) (VEGETATIVE PROTEIN 17) (VEG17) from Bacillus subtilis (585 aa); 56% identity in 466 aa overlap. 1 transmembrane region was found by PSORT; pyruvate kinase 462655..464058 Clostridium perfringens str. 13 988615 NP_561279.1 CDS CPE0363 NC_003366.1 464641 464997 D no significant homology.; hypothetical protein 464641..464997 Clostridium perfringens str. 13 988616 NP_561280.1 CDS CPE0364 NC_003366.1 465305 466102 D similar to pir:T35593 probable dehydrogenase from Streptomyces coelicolor (257 aa); 32.4% identity in 210 aa overlap; dehydrogenase 465305..466102 Clostridium perfringens str. 13 988617 NP_561281.1 CDS clsB NC_003366.1 466277 467812 D similar to sp:CLS_CLOPE CARDIOLIPIN SYNTHETASE (EC 2.7.8.-) (CARDIOLIPIN SYNTHASE) (CL SYNTHASE) from Clostridium perfringens (476 aa); 34.1% identity in 451 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; cardiolipin synthetase 466277..467812 Clostridium perfringens str. 13 988618 NP_561282.1 CDS CPE0366 NC_003366.1 468439 470001 D similar to pir:B69780 transcription regulator GntR family homolog ydfD from Bacillus subtilis (482 aa); 26.7% identity in 475 aa overlap; GntR family; GntR family transcriptional regulator 468439..470001 Clostridium perfringens str. 13 988619 NP_561283.1 CDS CPE0367 NC_003366.1 470131 471498 D similar to gpu:AP001509_125 RNA methyltransferase from Bacillus halodurans (458 aa); 50.8% identity in 451 aa overlap; RNA methyltransferase 470131..471498 Clostridium perfringens str. 13 988620 NP_561284.1 CDS CPE0368 NC_003366.1 472441 473340 D no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 472441..473340 Clostridium perfringens str. 13 988621 NP_561285.1 CDS CPE0369 NC_003366.1 473520 477425 D similar to pir:H69898 hypothetical protein yobI from Bacillus subtilis (1201 aa); 28% identity in 1236 aa overlap. ATC start. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 473520..477425 Clostridium perfringens str. 13 988622 NP_561286.1 CDS CPE0370 NC_003366.1 477962 478819 R similar to pir:A42400 probable transcription regulator msmR from Streptococcus mutans (278 aa); 32.8% identity in 271 aa overlap; AraC/XylS family; transcriptional regulator complement(477962..478819) Clostridium perfringens str. 13 988623 NP_561287.1 CDS CPE0371 NC_003366.1 479008 480276 D similar to gpu:AP001513_137 BH1864 gene product from Bacillus halodurans (461 aa); 30.2% identity in 420 aa overlap; hypothetical protein 479008..480276 Clostridium perfringens str. 13 988624 NP_561288.1 CDS CPE0372 NC_003366.1 480350 481276 D similar to gpu:AP001513_138 sugar transport system (permease) (binding protein dependent transporter) from Bacillus halodurans (309 aa); 35.1% identity in 291 aa overlap. 6 transmembrane regions were found by PSORT.; permease; ABC transporter 480350..481276 Clostridium perfringens str. 13 988625 NP_561289.1 CDS CPE0373 NC_003366.1 481293 482120 D similar to pir:A56641 probable membrane transport protein from Clostridium perfringens (275 aa); 68.5% identity in 251 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permease; suger ABC transporter 481293..482120 Clostridium perfringens str. 13 988626 NP_561290.1 CDS aga NC_003366.1 482148 484355 D similar to gp:AF038547_4 alpha-galactosidase (EC 3.2.1.22) (melibiase) from Bacillus stearothermophilus (743 aa); 52.4% identity in 735 aa overlap; alpha-galactosidase 482148..484355 Clostridium perfringens str. 13 988627 NP_561291.1 CDS CPE0375 NC_003366.1 484394 486931 D similar to gpu:AB038772_1 endo-beta-galactosidase C from Clostridium perfringens (845 aa); 97.2% identity in 832 aa overlap. N-terminal signal sequence was found by PSORT; endo-beta-galactosidase C 484394..486931 Clostridium perfringens str. 13 988628 NP_561292.1 CDS CPE0376 NC_003366.1 487133 487684 D no significant homology.; hypothetical protein 487133..487684 Clostridium perfringens str. 13 988629 NP_561293.1 CDS CPE0377 NC_003366.1 487803 488381 D similar to gpu:AP001518_225 BH3394 gene product from Bacillus halodurans (186 aa); 25% identity in 180 aa overlap; TetR/AcrR family; TetR family transcriptional regulator 487803..488381 Clostridium perfringens str. 13 988630 NP_561294.1 CDS CPE0378 NC_003366.1 488731 490524 D in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; hypothetical protein 488731..490524 Clostridium perfringens str. 13 988631 NP_561295.1 CDS CPE0379 NC_003366.1 490919 492652 D similar to gp:SC7A8_2 ABC transporter from Streptomyces coelicolor A3(2) (577 aa); 39.1% identity in 575 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter permease/ATP-binding protein 490919..492652 Clostridium perfringens str. 13 988632 NP_561296.1 CDS CPE0380 NC_003366.1 492645 494426 D similar to gp:SC7A8_3 ABC transporter from Streptomyces coelicolor A3(2) (642 aa); 46.1% identity in 532 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 492645..494426 Clostridium perfringens str. 13 988633 NP_561297.1 CDS CPE0381 NC_003366.1 494507 494905 R similar to pir:H72370 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (284 aa); 27.4% identity in 124 aa overlap; hypothetical protein complement(494507..494905) Clostridium perfringens str. 13 988634 NP_561298.1 CDS CPE0382 NC_003366.1 495171 496199 D similar to sp:YNGE_CLOPE HYPOTHETICAL PROTEIN IN NAGH 3'REGION (ORFE) (FRAGMENT) from Clostridium perfringens (88 aa); 100% identity in 87 aa overlap. Also similar to gp:CLOLYC_1 autolytic lysozyme from Clostridium acetobutylicum; autolytic lysozyme 495171..496199 Clostridium perfringens str. 13 988635 NP_561299.1 CDS CPE0383 NC_003366.1 496521 496928 D similar to sp:YNGD_CLOPE HYPOTHETICAL 14.9 KDA PROTEIN IN NAGH 3'REGION (ORFD) from Clostridium perfringens (132 aa); 78.1% identity in 128 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 496521..496928 Clostridium perfringens str. 13 988636 NP_561300.1 CDS CPE0384 NC_003366.1 497081 498001 R similar to pir:A70081 conserved hypothetical protein yxkH from Bacillus subtilis (279 aa); 31.1% identity in 254 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(497081..498001) Clostridium perfringens str. 13 988637 NP_561301.1 CDS CPE0385 NC_003366.1 498485 499225 D similar to sp:Y325_THEMA HYPOTHETICAL OXIDOREDUCTASE TM0325 (EC 1.-.-.-) from Thermotoga maritima (251 aa); 39.9% identity in 263 aa overlap; oxidoreductase 498485..499225 Clostridium perfringens str. 13 988638 NP_561302.1 CDS CPE0386 NC_003366.1 499248 499979 R similar to gpu:AP001515_128 transcriptional regulator (GntR family) from Bacillus halodurans (242 aa); 27.2% identity in 217 aa overlap; GntR family; transcriptional regulator complement(499248..499979) Clostridium perfringens str. 13 988639 NP_561303.1 CDS udp NC_003366.1 500213 500998 D similar to sp:UDP_TREPA URIDINE PHOSPHORYLASE (EC 2.4.2.3) (UDRPASE) from Treponema pallidum (258 aa); 54.2% identity in 249 aa overlap. 1 transmembrane region was found by PSORT; uridine phosphorylase 500213..500998 Clostridium perfringens str. 13 988640 NP_561304.1 CDS deoB NC_003366.1 501176 502366 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 501176..502366 Clostridium perfringens str. 13 988641 NP_561305.1 CDS arcD NC_003366.1 502793 504238 R similar to gpu:AP002548_234 arginine/ornithine antiporter from Chlamydophila pneumoniae (481 aa); 48.7% identity in 456 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; amino acid permease complement(502793..504238) Clostridium perfringens str. 13 988642 NP_561306.1 CDS dchS NC_003366.1 504284 505246 R similar to pir:DCCLHP histidine decarboxylase (EC 4.1.1.22) precursor from Clostridium perfringens (320 aa); 99.7% identity in 320 aa overlap; histidine decarboxylase, pyruvoyl type complement(504284..505246) Clostridium perfringens str. 13 988643 NP_561307.1 CDS CPE0391 NC_003366.1 505714 506547 D similar to pir:D69860 probable phosphoesterase (EC 3.1.-.-) ykoQ from Bacillus subtilis (270 aa); 28.8% identity in 271 aa overlap. N-terminal signal sequence was found by PSORT; phosphoesterase 505714..506547 Clostridium perfringens str. 13 988644 NP_561308.1 CDS CPE0392 NC_003366.1 506672 506824 D no significant homology.; hypothetical protein 506672..506824 Clostridium perfringens str. 13 988645 NP_561309.1 CDS CPE0393 NC_003366.1 506921 507784 D similar to sp:YKWC_BACSU HYPOTHETICAL 30.7 KDA PROTEIN IN MCPC-KINA INTERGENIC REGION from Bacillus subtilis (288 aa); 51.7% identity in 286 aa overlap. Also similar to many dehydrogenases; hypothetical protein 506921..507784 Clostridium perfringens str. 13 988646 NP_561310.1 CDS nadA NC_003366.1 508092 508997 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 508092..508997 Clostridium perfringens str. 13 988647 NP_561311.1 CDS nadB NC_003366.1 509002 510321 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 509002..510321 Clostridium perfringens str. 13 988648 NP_561312.1 CDS nadC NC_003366.1 510278 511117 D similar to pir:B70375 quinolinate phosphoribosyl transferase (EC 2.4.2.19) from Aquifex aeolicus (274 aa); 55.7% identity in 273 aa overlap; nicotinate-nucleotide pyrophosphorylase 510278..511117 Clostridium perfringens str. 13 988649 NP_561313.1 CDS uapC NC_003366.1 511369 512727 R similar to sp:YCPX_CLOPE HYPOTHETICAL PROTEIN IN CPE 5'REGION (FRAGMENT) from Clostridium perfringens (311 aa); 88.2% identity in 306 aa overlap. Also similar to many permeases. 11 transmembrane regions were found by PSORT.; transporter complement(511369..512727) Clostridium perfringens str. 13 988650 NP_561314.1 CDS deoD NC_003366.1 513402 514220 D catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 513402..514220 Clostridium perfringens str. 13 988651 NP_561315.1 CDS CPE0399 NC_003366.1 514310 514987 D similar to pir:E83401 probable transporter PA1958 from Pseudomonas aeruginosa (191 aa); 23.6% identity in 178 aa overlap. 6 transmembrane regions were found by PSORT.; transporter 514310..514987 Clostridium perfringens str. 13 988652 NP_561316.1 CDS CPE0400 NC_003366.1 515021 515662 D no significant homology.; hypothetical protein 515021..515662 Clostridium perfringens str. 13 988653 NP_561317.1 CDS CPE0401 NC_003366.1 515887 516204 D no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 515887..516204 Clostridium perfringens str. 13 988654 NP_561318.1 CDS CPE0402 NC_003366.1 516217 516828 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 516217..516828 Clostridium perfringens str. 13 988655 NP_561319.1 CDS CPE0403 NC_003366.1 517036 517572 D no significant homology. 2 transmembrane regions were found by PSORT.; hypothetical protein 517036..517572 Clostridium perfringens str. 13 988656 NP_561320.1 CDS brnQ NC_003366.1 518306 519643 D similar to pir:C69596 branched-chain amino acid transporter braB from Bacillus subtilis (445 aa); 44.5% identity in 418 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; branched chain amino acid ABC transporter carrier protein 518306..519643 Clostridium perfringens str. 13 988657 NP_561321.1 CDS CPE0405 NC_003366.1 519899 520771 D similar to gp:LSEXOGC_5 L.sake gene cluster from Lactobacillus sakei (283 aa); 43.4% identity in 274 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 519899..520771 Clostridium perfringens str. 13 988658 NP_561322.1 CDS CPE0406 NC_003366.1 520903 522249 D similar to pir:G70034 reticuline oxidase homolog yvdP from Bacillus subtilis (447 aa); 30.6% identity in 451 aa overlap; reticuline oxidase 520903..522249 Clostridium perfringens str. 13 988659 NP_561323.1 CDS CPE0407 NC_003366.1 522549 522902 D no significant homology. 2 transmembrane regions were found by PSORT.; hypothetical protein 522549..522902 Clostridium perfringens str. 13 988660 NP_561324.1 CDS CPE0408 NC_003366.1 523097 523921 D similar to gpu:AP001513_19 BH1746 gene product from Bacillus halodurans (282 aa); 36.2% identity in 271 aa overlap; hypothetical protein 523097..523921 Clostridium perfringens str. 13 988661 NP_561325.1 CDS CPE0409 NC_003366.1 524071 525504 D similar to pir:E72254 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (479 aa); 43.9% identity in 467 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 524071..525504 Clostridium perfringens str. 13 988662 NP_561326.1 CDS CPE0410 NC_003366.1 525713 526912 D similar to gp:CPIS1136_1 C.perfringens IS1136 DNA from Clostridium perfringens (122 aa); 65.6% identity in 125 aa overlap; IS1136; transposase 525713..526912 Clostridium perfringens str. 13 988663 NP_561327.1 CDS CPE0411 NC_003366.1 527033 527965 D partially similar to pir:C75218 probable monooxygenase PAB0184 from Pyrococcus abyssi (strain Orsay) (407 aa); 26.3% identity in 259 aa overlap. 1 transmembrane region was found by PSORT; monooxygenase 527033..527965 Clostridium perfringens str. 13 988664 NP_561328.1 CDS CPE0412 NC_003366.1 528206 528583 D similar to pir:F32057 hypothetical protein 2 from Azotobacter vinelandii (183 aa); 33.3% identity in 123 aa overlap; hypothetical protein 528206..528583 Clostridium perfringens str. 13 988665 NP_561329.1 CDS CPE0413 NC_003366.1 528800 529372 D similar to pir:F69993 carbonic anhydrase homolog ytiB from Bacillus subtilis (187 aa); 57.7% identity in 182 aa overlap; carbonic anhydrase 528800..529372 Clostridium perfringens str. 13 988666 NP_561330.1 CDS CPE0414 NC_003366.1 529513 530151 D no significant homology. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 529513..530151 Clostridium perfringens str. 13 988667 NP_561331.1 CDS CPE0415 NC_003366.1 530176 530565 D no significant homology.; hypothetical protein 530176..530565 Clostridium perfringens str. 13 988668 NP_561332.1 CDS htpG NC_003366.1 530899 532770 D molecular chaperone; heat shock protein 90 530899..532770 Clostridium perfringens str. 13 988669 NP_561333.1 CDS CPE0417 NC_003366.1 532934 533926 D similar to sp:MALR_STRPN MALTOSE OPERON TRANSCRIPTIONAL REPRESSOR from Streptococcus pneumoniae (327 aa); 39.4% identity in 310 aa overlap; LacI family; LacI family transcriptional regulator 532934..533926 Clostridium perfringens str. 13 988670 NP_561334.1 CDS CPE0418 NC_003366.1 534362 536026 D similar to gp:BACEA14G_1 exo-alpha-1,4-glucosidase from Bacillus stearothermophilus (555 aa); 62.3% identity in 551 aa overlap; exo-alpha-1,4-glucosidase 534362..536026 Clostridium perfringens str. 13 988671 NP_561335.1 CDS CPE0419 NC_003366.1 536285 537940 D similar to gp:SMU78600_1 ptsG protein from Streptococcus mutans (409 aa); 51.1% identity in 266 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; glucose-specific enzyme IIA component; PTS system transporter subunit IIBC 536285..537940 Clostridium perfringens str. 13 988672 NP_561336.1 CDS CPE0420 NC_003366.1 537951 538742 D some similarity to pir:T37061 probable secreted protein from Streptomyces coelicolor (279 aa); 23.9% identity in 176 aa overlap; hypothetical protein 537951..538742 Clostridium perfringens str. 13 988673 NP_561337.1 CDS glpQ NC_003366.1 539283 540020 D similar to pir:F69961 glycerophosphodiester phosphodiesterase homolog yqiK from Bacillus subtilis (243 aa); 37% identity in 235 aa overlap; glycerophosphodiester phosphodiesterase 539283..540020 Clostridium perfringens str. 13 988674 NP_561338.1 CDS CPE0422 NC_003366.1 540117 541403 D similar to sp:YIHN_ECOLI HYPOTHETICAL 46.3 KDA PROTEIN IN GLNA-RBN INTERGENIC REGION (O421) from Escherichia coli (421 aa); 37.5% identity in 408 aa overlap; hypothetical protein 540117..541403 Clostridium perfringens str. 13 988675 NP_561339.1 CDS pcrA NC_003366.1 541903 544515 D similar to gpu:AP001509_86 ATP-dependent DNA helicase from Bacillus halodurans (747 aa); 30.3% identity in 478 aa overlap; ATP-dependent DNA helicase 541903..544515 Clostridium perfringens str. 13 988676 NP_561340.1 CDS trmB NC_003366.1 544692 545351 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 544692..545351 Clostridium perfringens str. 13 988677 NP_561341.1 CDS CPE0425 NC_003366.1 545510 546364 R partially similar to gp:CLOTETP_1 Clostridium perfringens tetracycline resistance protein (tetA(P) and tetB(P)) genes, complete cds's, and three unidentified coding regions from Clostridium perfringens (102 aa); 60.8% identity in 102 aa overlap; hypothetical protein complement(545510..546364) Clostridium perfringens str. 13 988678 NP_561342.1 CDS CPE0426 NC_003366.1 546981 548264 D similar to gpu:AP001509_228 BH0790 gene product from Bacillus halodurans (454 aa); 52.8% identity in 396 aa overlap; hypothetical protein 546981..548264 Clostridium perfringens str. 13 988679 NP_561343.1 CDS CPE0427 NC_003366.1 548732 549310 D no significant homology.; hypothetical protein 548732..549310 Clostridium perfringens str. 13 988680 NP_561344.1 CDS CPE0428 NC_003366.1 549541 549696 D no significant homology.; hypothetical protein 549541..549696 Clostridium perfringens str. 13 988681 NP_561345.1 CDS CPE0429 NC_003366.1 550064 550615 D no significant homology. 2 transmembrane regions were found by PSORT.; hypothetical protein 550064..550615 Clostridium perfringens str. 13 988682 NP_561346.1 CDS sipS NC_003366.1 550703 551245 R similar to sp:LEPU_BACSU SIGNAL PEPTIDASE I U (EC 3.4.21.89) (SPASE I) (LEADER PEPTIDASE I) from Bacillus subtilis (187 aa); 35% identity in 143 aa overlap. N-terminal signal sequence was found by PSORT. transmembrane region was found by PSORT; type I signal peptidase complement(550703..551245) Clostridium perfringens str. 13 988683 NP_561347.1 CDS CPE0431 NC_003366.1 551453 552295 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 551453..552295 Clostridium perfringens str. 13 988684 NP_561348.1 CDS CPE0432 NC_003366.1 552580 553419 D similar to gpu:AE004250_8 beta-ketoadipate enol-lactone hydrolase, from Vibrio cholerae (272 aa); 34.5% identity in 252 aa overlap; alpha/beta fold family hydrolase 552580..553419 Clostridium perfringens str. 13 988685 NP_561349.1 CDS CPE0433 NC_003366.1 553503 554798 D partially similar to sp:Y164_METJA HYPOTHETICAL PROTEIN MJ0164 from Methanococcus jannaschii (395 aa); 29.5% identity in 234 aa overlap; hypothetical protein 553503..554798 Clostridium perfringens str. 13 988686 NP_561350.1 CDS CPE0434 NC_003366.1 555174 555662 D no significant homology.; GNAT family acetyltransferase 555174..555662 Clostridium perfringens str. 13 988687 NP_561351.1 CDS CPE0435 NC_003366.1 555721 556056 R no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein complement(555721..556056) Clostridium perfringens str. 13 988688 NP_561352.1 CDS CPE0436 NC_003366.1 556062 556478 R no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein complement(556062..556478) Clostridium perfringens str. 13 988689 NP_561353.1 CDS hlyB NC_003366.1 557024 558361 D similar to gp:AF051356_4 hemolysin from Streptococcus mutans (445 aa); 32.8% identity in 412 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hemolysin 557024..558361 Clostridium perfringens str. 13 988690 NP_561354.1 CDS CPE0438 NC_003366.1 558636 559688 D similar to pir:S74691 iron transport protein from Synechocystis sp. (strain PCC 6803) (360 aa); 37% identity in 338 aa overlap; iron-binding protein; ion-uptake ABC transporter 558636..559688 Clostridium perfringens str. 13 988691 NP_561355.1 CDS CPE0439 NC_003366.1 559688 561280 D similar to pir:E81435 probable iron-uptake ABC transport system permease Cj0174c from Campylobacter jejuni (strain NCTC 11168) (538 aa); 34.6% identity in 529 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; permease; iron-uptake ABC transporter 559688..561280 Clostridium perfringens str. 13 988692 NP_561356.1 CDS CPE0440 NC_003366.1 561283 561963 D similar to gpu:AP001508_235 ABC transporter (ATP-binding protein) from Bacillus halodurans (349 aa); 46.7% identity in 225 aa overlap; ATP-binding protein; ABC transporter 561283..561963 Clostridium perfringens str. 13 988693 NP_561357.1 CDS CPE0441 NC_003366.1 562253 562942 D similar to gp:MBHRDED_1 hypothetical protein from Methanosarcina barkeri (225 aa); 43.9% identity in 198 aa overlap; hypothetical protein 562253..562942 Clostridium perfringens str. 13 988694 NP_561358.1 CDS CPE0442 NC_003366.1 563132 563305 D no significant homology.; BFD-like iron-sulfur cluster-binding protein 563132..563305 Clostridium perfringens str. 13 988695 NP_561359.1 CDS CPE0443 NC_003366.1 563577 563948 D similar to gpu:AP001509_89 transcriptional regulator (GntR family) from Bacillus halodurans (123 aa); 58.2% identity in 122 aa overlap; GntR family; GntR family transcriptional regulator 563577..563948 Clostridium perfringens str. 13 988696 NP_561360.1 CDS CPE0444 NC_003366.1 563982 564845 D similar to gpu:AP001509_90 ABC transporter (ATP-binding protein) from Bacillus halodurans (288 aa); 46.9% identity in 286 aa overlap; ATP-binding protein; ABC transporter 563982..564845 Clostridium perfringens str. 13 988697 NP_561361.1 CDS CPE0445 NC_003366.1 564847 565473 D no significant homology. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 564847..565473 Clostridium perfringens str. 13 988698 NP_561362.1 CDS CPE0446 NC_003366.1 565475 566116 D no significant homology. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 565475..566116 Clostridium perfringens str. 13 988699 NP_561363.1 CDS lguL NC_003366.1 566258 566638 D similar to sp:LGUL_HAEIN LACTOYLGLUTATHIONE LYASE (EC 4.4.1.5) (METHYLGLYOXALASE) (ALDOKETOMUTASE) (GLYOXALASE I) (GLX I) (KETONE-ALDEHYDE MUTASE) (S-D-LACTOYLGLUTATHIONE METHYLGLYOXAL LYASE) from Haemophilus influenzae (135 aa); 47.5% identity in 122 aa overlap; lactoylglutathione lyase 566258..566638 Clostridium perfringens str. 13 988700 NP_561364.1 CDS CPE0448 NC_003366.1 566776 567633 R similar to gp:AE001762_11 transcriptional regulator, from Thermotoga maritima (299 aa); 26.4% identity in 239 aa overlap; AraC/XylS family; transcriptional regulator complement(566776..567633) Clostridium perfringens str. 13 988701 NP_561365.1 CDS adh NC_003366.1 567822 568970 D similar to sp:ADH2_ECOLI PROBABLE ALCOHOL DEHYDROGENASE (EC 1.1.1.1) from Escherichia coli (383 aa); 63.8% identity in 378 aa overlap; alcohol dehydrogenase 567822..568970 Clostridium perfringens str. 13 988702 NP_561366.1 CDS CPE0450 NC_003366.1 569554 569877 D no significant homology.; hypothetical protein 569554..569877 Clostridium perfringens str. 13 988703 NP_561367.1 CDS CPE0451 NC_003366.1 569990 570382 D similar to sp:YWKD_BACSU HYPOTHETICAL 14.8 KDA PROTEIN IN TDK-PRFA INTERGENIC REGION from Bacillus subtilis (128 aa); 64.3% identity in 126 aa overlap; hypothetical protein 569990..570382 Clostridium perfringens str. 13 988704 NP_561368.1 CDS entC NC_003366.1 570703 572580 D partially similar to gp:AF192766_1 enterotoxin from Bacillus cereus (419 aa); 31.5% identity in 130 aa overlap. N-terminal signal sequence was found by PSORT; enterotoxin 570703..572580 Clostridium perfringens str. 13 988705 NP_561369.1 CDS CPE0453 NC_003366.1 572798 573583 R similar to gpu:AP001519_11 transcriptional regulator of multidrug-efflux transporter genes from Bacillus halodurans (271 aa); 33.8% identity in 240 aa overlap; MerR family; MerR family transcriptional regulator complement(572798..573583) Clostridium perfringens str. 13 988706 NP_561370.1 CDS CPE0454 NC_003366.1 573696 575516 D no significant homology. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein 573696..575516 Clostridium perfringens str. 13 988707 NP_561371.1 CDS CPE0455 NC_003366.1 575822 576331 D similar to N-terminal of sp:APL_LACLC ALKALINE PHOSPHATASE LIKE PROTEIN from Lactococcus lactis (242 aa); 30.5% identity in 154 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; alkaline phosphatase-like protein 575822..576331 Clostridium perfringens str. 13 988708 NP_561372.1 CDS CPE0456 NC_003366.1 576404 577036 D no significant homology.; hypothetical protein 576404..577036 Clostridium perfringens str. 13 988709 NP_561373.1 CDS CPE0457 NC_003366.1 577266 577970 D similar to gpu:AP001511_42 two-component response regulator from Bacillus halodurans (232 aa); 55.7% identity in 230 aa overlap; DNA-binding response regulator 577266..577970 Clostridium perfringens str. 13 988710 NP_561374.1 CDS CPE0458 NC_003366.1 577945 580176 D similar to gpu:AP001511_43 BH1154 gene product from Bacillus halodurans (750 aa); 29.8% identity in 652 aa overlap. 6 transmembrane regions were found by PSORT.; sensor histidine kinase 577945..580176 Clostridium perfringens str. 13 988711 NP_561375.1 CDS CPE0459 NC_003366.1 580610 580855 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 580610..580855 Clostridium perfringens str. 13 988712 NP_561376.1 CDS CPE0460 NC_003366.1 580950 581645 D partially similar to gpu:AE004017_3 conserved hypothetical protein from Xylella fastidiosa (740 aa); 29.8% identity in 171 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein 580950..581645 Clostridium perfringens str. 13 988713 NP_561377.1 CDS CPE0461 NC_003366.1 582364 583026 D similar to gpu:AP001519_184 capsular polysaccharide biosynthesis from Bacillus halodurans (232 aa); 19.5% identity in 215 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; capsular polysaccharide biosynthesis protein 582364..583026 Clostridium perfringens str. 13 988714 NP_561378.1 CDS CPE0462 NC_003366.1 583049 583726 D similar to gpu:AP001519_183 capsular polysaccharide biosynthesis from Bacillus halodurans (235 aa); 52.1% identity in 188 aa overlap; capsular polysaccharide biosynthesis protein 583049..583726 Clostridium perfringens str. 13 988715 NP_561379.1 CDS CPE0463 NC_003366.1 583751 585664 D similar to gp:AF155805_2 Cps9E from Streptococcus suis (608 aa); 43.4% identity in 588 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; capsular polysaccharide biosynthesis protein 583751..585664 Clostridium perfringens str. 13 988716 NP_561380.1 CDS CPE0464 NC_003366.1 585795 586937 D similar to pir:F70037 spore coat polysaccharide biosynthesis homolog yvfE from Bacillus subtilis (301 aa); 57.3% identity in 286 aa overlap. Also similar to many aminotransferases; spore coat polysaccharide biosynthesis protein 585795..586937 Clostridium perfringens str. 13 988717 NP_561381.1 CDS CPE0465 NC_003366.1 586974 588206 D no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 586974..588206 Clostridium perfringens str. 13 988718 NP_561382.1 CDS CPE0466 NC_003366.1 588224 588637 D no significant homology.; hypothetical protein 588224..588637 Clostridium perfringens str. 13 988719 NP_561383.1 CDS CPE0467 NC_003366.1 588699 589616 D some similarity to gpu:AP001508_4 ABC transporter (ATP-binding protein) from Bacillus halodurans (213 aa); 22.8% identity in 123 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 588699..589616 Clostridium perfringens str. 13 988720 NP_561384.1 CDS CPE0468 NC_003366.1 589646 589933 D no significant homology.; hypothetical protein 589646..589933 Clostridium perfringens str. 13 988721 NP_561385.1 CDS CPE0469 NC_003366.1 589908 590363 D no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 589908..590363 Clostridium perfringens str. 13 988722 NP_561386.1 CDS CPE0470 NC_003366.1 590494 590679 D no significant homology.; hypothetical protein 590494..590679 Clostridium perfringens str. 13 988723 NP_561387.1 CDS CPE0471 NC_003366.1 590799 591017 D no significant homology.; hypothetical protein 590799..591017 Clostridium perfringens str. 13 988724 NP_561388.1 CDS CPE0472 NC_003366.1 591064 592935 R similar to pir:F75142 abc transporter ATP-binding protein PAB2148 from Pyrococcus abyssi (strain Orsay) (580 aa); 24.7% identity in 547 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter complement(591064..592935) Clostridium perfringens str. 13 988725 NP_561389.1 CDS CPE0473 NC_003366.1 593436 594053 D similar to pir:T44837 probable UDP-galactose phosphate transferase from Acinetobacter lwoffii (203 aa); 55.1% identity in 196 aa overlap. N-terminal signal sequence was found by PSORT; UDP-galactose phosphate transferase 593436..594053 Clostridium perfringens str. 13 988726 NP_561390.1 CDS cysE NC_003366.1 594105 594743 D similar to pir:E70037 serine O-acetyltransferase homolog yvfD from Bacillus subtilis (216 aa); 33.2% identity in 214 aa overlap. N-terminal signal sequence was found by PSORT; serine O-acetyltransferase 594105..594743 Clostridium perfringens str. 13 988727 NP_561391.1 CDS CPE0475 NC_003366.1 594774 595931 D similar to pir:C70036 capsular polysaccharide biosynthesis homolog yveN from Bacillus subtilis (381 aa); 34.4% identity in 369 aa overlap; capsular polysaccharide biosynthesis protein 594774..595931 Clostridium perfringens str. 13 988728 NP_561392.1 CDS CPE0476 NC_003366.1 595897 597003 D similar to pir:F70441 capsular polysaccharide biosynthsis protein from Aquifex aeolicus (316 aa); 31.2% identity in 202 aa overlap; capsular polysaccharide biosynthesis protein 595897..597003 Clostridium perfringens str. 13 988729 NP_561393.1 CDS CPE0477 NC_003366.1 597023 597907 D similar to pir:S51262 probable beta-glycosyltransferase trsC from Yersinia enterocolitica (292 aa); 33.3% identity in 258 aa overlap. 1 transmembrane region was found by PSORT; beta-glycosyltransferase 597023..597907 Clostridium perfringens str. 13 988730 NP_561394.1 CDS CPE0478 NC_003366.1 597933 599000 D similar to pir:F70036 capsular polysaccharide biosynthesis homolog yveQ from Bacillus subtilis (367 aa); 34.6% identity in 286 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; capsular polysaccharide biosynthesis protein 597933..599000 Clostridium perfringens str. 13 988731 NP_561395.1 CDS CPE0479 NC_003366.1 599019 600128 D similar to pir:E70036 capsular polysaccharide biosynthesis homolog yveP from Bacillus subtilis (384 aa); 33.2% identity in 368 aa overlap. 2 transmembrane regions were found by PSORT.; capsular polysaccharide biosynthesis protein 599019..600128 Clostridium perfringens str. 13 988732 NP_561396.1 CDS CPE0480 NC_003366.1 600146 601336 D similar to pir:F70441 capsular polysaccharide biosynthsis protein from Aquifex aeolicus (316 aa); 30.8% identity in 201 aa overlap; capsular polysaccharide biosynthsis protein 600146..601336 Clostridium perfringens str. 13 988733 NP_561397.1 CDS CPE0481 NC_003366.1 601394 602422 D similar to pir:T50039 beta-1,4-galactosyltransferase cps14J from Streptococcus pneumoniae (318 aa); 34.5% identity in 310 aa overlap; beta-1,4-galactosyltransferase 601394..602422 Clostridium perfringens str. 13 988734 NP_561398.1 CDS CPE0482 NC_003366.1 602440 603594 D similar to pir:T50042 hypothetical protein tasA from Streptococcus pneumoniae (359 aa); 39.7% identity in 317 aa overlap; glycero-phosphotransferase 602440..603594 Clostridium perfringens str. 13 988735 NP_561399.1 CDS CPE0483 NC_003366.1 603657 604079 D similar to pir:A70419 glycerol-3-phosphate cytidyltransferase from Aquifex aeolicus (168 aa); 46% identity in 139 aa overlap; glycerol-3-phosphate cytidyltransferase 603657..604079 Clostridium perfringens str. 13 989352 NP_561400.1 CDS CPE0484 NC_003366.1 604095 605087 D similar to gp:AF155804_7 Cps1K from Streptococcus suis (279 aa); 42.4% identity in 231 aa overlap. N-terminal signal sequence was found by PSORT; capsular polysaccharide biosynthsis protein 604095..605087 Clostridium perfringens str. 13 988737 NP_561401.1 CDS CPE0485 NC_003366.1 605106 606296 D similar to pir:F70441 capsular polysaccharide biosynthsis protein from Aquifex aeolicus (316 aa); 34.4% identity in 221 aa overlap. N-terminal signal sequence was found by PSORT; capsular polysaccharide biosynthsis protein 605106..606296 Clostridium perfringens str. 13 988738 NP_561402.1 CDS CPE0486 NC_003366.1 606317 607504 D similar to gp:AF143904_1 galactosyl transferase from Actinobacillus pleuropneumoniae (383 aa); 26.5% identity in 351 aa overlap; galactosyl transferase 606317..607504 Clostridium perfringens str. 13 988739 NP_561403.1 CDS CPE0487 NC_003366.1 607514 608437 D partially similar to pir:T48446 hypothetical protein T32M21.100 from Arabidopsis thaliana (764 aa); 33.6% identity in 238 aa overlap; hypothetical protein 607514..608437 Clostridium perfringens str. 13 988740 NP_561404.1 CDS CPE0488 NC_003366.1 608456 609622 D similar to pir:F70441 capsular polysaccharide biosynthsis protein from Aquifex aeolicus (316 aa); 31.3% identity in 179 aa overlap. 1 transmembrane region was found by PSORT; capsular polysaccharide biosynthsis protein 608456..609622 Clostridium perfringens str. 13 988741 NP_561405.1 CDS CPE0489 NC_003366.1 609639 611177 D similar to gp:AF048749_8 flippase from Bacteroides fragilis (511 aa); 26.8% identity in 459 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; flippase 609639..611177 Clostridium perfringens str. 13 988742 NP_561406.1 CDS CPE0490 NC_003366.1 611190 612995 D similar to gpu:AF244637_1 hypothetical protein from Carboxydothermus hydrogenoformans (162 aa); 33.9% identity in 109 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 611190..612995 Clostridium perfringens str. 13 988743 NP_561407.1 CDS CPE0491 NC_003366.1 613798 614496 D similar to pir:F70066 capsular polysaccharide biosynthesis homolog ywqC from Bacillus subtilis (248 aa); 31% identity in 232 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; capsular polysaccharide biosynthsis protein 613798..614496 Clostridium perfringens str. 13 988744 NP_561408.1 CDS CPE0492 NC_003366.1 614510 615163 D similar to pir:G70066 capsular polysaccharide biosynthesis homolog ywqD from Bacillus subtilis (237 aa); 44.1% identity in 213 aa overlap; capsular polysaccharide biosynthsis protein 614510..615163 Clostridium perfringens str. 13 988745 NP_561409.1 CDS CPE0493 NC_003366.1 615362 616030 D similar to C-terminal of prf:2512318F Cps2E protein from Streptococcus pneumoniae (455 aa); 47% identity in 198 aa overlap. 1 transmembrane region was found by PSORT; capsular polysaccharide biosynthsis protein 615362..616030 Clostridium perfringens str. 13 988746 NP_561410.1 CDS CPE0494 NC_003366.1 616051 617397 D similar to pir:G59102 hypothetical protein pXO1-95 from Bacillus anthracis virulence plasmid pXO1 (443 aa); 52.8% identity in 445 aa overlap.Also similar to pir:A70067 NDP-sugar dehydrogenase homolog ywqF from Bacillus subtilis; NDP-suger dehydrogenase 616051..617397 Clostridium perfringens str. 13 988747 NP_561411.1 CDS CPE0495 NC_003366.1 617414 618460 D similar to pir:H70352 mannose-6-phosphate isomerase/mannose-1-phosphate guanyl transferase from Aquifex aeolicus (453 aa); 37.2% identity in 339 aa overlap; mannose-1-phosphate guanylyltransferase 617414..618460 Clostridium perfringens str. 13 988748 NP_561412.1 CDS CPE0496 NC_003366.1 618495 619220 D similar to prf:2518331F ManNAc transferase from Streptococcus pneumoniae (247 aa); 32.4% identity in 241 aa overlap; N-acetyl-mannosamine transferase 618495..619220 Clostridium perfringens str. 13 988749 NP_561413.1 CDS CPE0497 NC_003366.1 619235 619669 D similar to N-terminal of pir:B71691 capm protein (capM1) RP344 from Rickettsia prowazekii (389 aa); 26.8% identity in 138 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing); hypothetical protein 619235..619669 Clostridium perfringens str. 13 988750 NP_561414.1 CDS CPE0498 NC_003366.1 619663 620319 D similar to C-terminal of pir:F64500 probable hexosyltransferase (EC 2.4.1.-) MJ1607 from Methanococcus jannaschii (390 aa); 27.8% identity in 209 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing); hexosyltransferase 619663..620319 Clostridium perfringens str. 13 988751 NP_561415.1 CDS CPE0499 NC_003366.1 620321 621448 D similar to C-terminal of pir:A75059 probable hexosyltransferase (EC 2.4.1.-) PAB0973 from Pyrococcus abyssi (strain Orsay) (390 aa); 39% identity in 141 aa overlap; hexosyltransferase 620321..621448 Clostridium perfringens str. 13 988752 NP_561416.1 CDS CPE0500 NC_003366.1 621466 622695 D similar to sp:YC08_KLEPN HYPOTHETICAL 42.6 KDA PROTEIN IN CPS REGION (ORF8) from Klebsiella pneumoniae (373 aa); 28.6% identity in 399 aa overlap; hexosyltransferase 621466..622695 Clostridium perfringens str. 13 988753 NP_561417.1 CDS CPE0501 NC_003366.1 622784 623764 D similar to gp:AF155804_7 Cps1K from Streptococcus suis (279 aa); 39.7% identity in 229 aa overlap; capsular polysaccharide biosynthsis protein 622784..623764 Clostridium perfringens str. 13 988754 NP_561418.1 CDS CPE0502 NC_003366.1 623775 624878 D similar to gpu:AP001519_178 lipopolysaccharide biosynthesis from Bacillus halodurans (373 aa); 28.6% identity in 360 aa overlap; lipopolysaccharide biosynthesis protein 623775..624878 Clostridium perfringens str. 13 988755 NP_561419.1 CDS CPE0503 NC_003366.1 624883 626367 D no significant homology. N-terminal signal sequence and 12 transmembrane regions were found by PSORT.; hypothetical protein 624883..626367 Clostridium perfringens str. 13 988756 NP_561420.1 CDS CPE0504 NC_003366.1 626387 627433 D similar to pir:G70036 spore coat polysaccharide biosynthesis homolog yveR from Bacillus subtilis (344 aa); 32.8% identity in 262 aa overlap. 1 transmembrane region was found by PSORT; spore coat polysaccharide biosynthesis protein 626387..627433 Clostridium perfringens str. 13 988757 NP_561421.1 CDS CPE0505 NC_003366.1 627408 628928 D similar to gp:AF048749_8 flippase from Bacteroides fragilis (511 aa); 28% identity in 443 aa overlap. N-terminal signal sequence and 12 transmembrane regions were found by PSORT.; flippase 627408..628928 Clostridium perfringens str. 13 988758 NP_561422.1 CDS galF NC_003366.1 629121 630041 D similar to gpu:AP001519_167 UTP-glucose-1-phosphate uridylyltransferase from Bacillus halodurans (297 aa); 60.1% identity in 288 aa overlap. N-terminal signal sequence was found by PSORT; UTP-glucose-1-phosphate uridylyltransferase 629121..630041 Clostridium perfringens str. 13 988759 NP_561423.1 CDS CPE0507 NC_003366.1 630408 631055 D no significant homology.; RNA polymerase sigma factor 630408..631055 Clostridium perfringens str. 13 988760 NP_561424.1 CDS CPE0508 NC_003366.1 631476 633719 D no significant homology.; hypothetical protein 631476..633719 Clostridium perfringens str. 13 988761 NP_561425.1 CDS galE NC_003366.1 633797 634813 D similar to sp:GALE_BACSU UDP-GLUCOSE 4-EPIMERASE (EC 5.1.3.2) (GALACTOWALDENASE) (UDP- GALACTOSE 4-EPIMERASE) from Bacillus subtilis (339 aa); 58.6% identity in 338 aa overlap; UDP-glucose 4-epimerase 633797..634813 Clostridium perfringens str. 13 988762 NP_561426.1 CDS galF NC_003366.1 635095 636039 D similar to gpu:AP001519_167 UTP-glucose-1-phosphate uridylyltransferase from Bacillus halodurans (297 aa); 60.6% identity in 284 aa overlap. N-terminal signal sequence was found by PSORT; UTP-glucose-1-phosphate uridylyltransferase 635095..636039 Clostridium perfringens str. 13 988763 NP_561427.1 CDS CPE0511 NC_003366.1 636364 637056 D no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 636364..637056 Clostridium perfringens str. 13 988764 NP_561428.1 CDS agaN NC_003366.1 637566 639770 D similar to gp:AF130985_1 alpha-galactosidase (EC 3.2.1.22) AgaN from Bacillus stearothermophilus (729 aa); 60.4% identity in 720 aa overlap. N-terminal signal sequence was found by PSORT; alpha-galactosidase 637566..639770 Clostridium perfringens str. 13 988766 NP_561429.1 CDS CPE0513 NC_003366.1 639916 640665 R similar to gpu:AP001518_125 BH3294 gene product from Bacillus halodurans (254 aa); 35.4% identity in 209 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(639916..640665) Clostridium perfringens str. 13 988767 NP_561430.1 CDS CPE0514 NC_003366.1 640904 641428 D similar to gp:AF085497_1 signal peptidase type I from Bacillus amyloliquefaciens (194 aa); 37.2% identity in 137 aa overlap; signal peptidase type I 640904..641428 Clostridium perfringens str. 13 988768 NP_561431.1 CDS CPE0515 NC_003366.1 641482 642117 D some similarity to N-terminal of gpu:AP001514_135 spore coat-associated protein from Bacillus halodurans (210 aa); 27.2% identity in 103 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 641482..642117 Clostridium perfringens str. 13 988769 NP_561432.1 CDS CPE0516 NC_003366.1 642165 642890 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 642165..642890 Clostridium perfringens str. 13 988770 NP_561433.1 CDS CPE0517 NC_003366.1 642907 644751 D no significant homology. N-terminal signal sequence was found by PSORT; von Willebrand factor A 642907..644751 Clostridium perfringens str. 13 988771 NP_561434.1 CDS CPE0518 NC_003366.1 644991 645707 D similar to pir:S60139 virR protein from Clostridium perfringens (252 aa); 31.9% identity in 238 aa overlap; DNA-binding response regulator 644991..645707 Clostridium perfringens str. 13 988772 NP_561435.1 CDS CPE0519 NC_003366.1 645712 647007 D similar to pir:C55521 virS protein from Clostridium perfringens (440 aa); 32.5% identity in 234 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; sensor histidine kinase 645712..647007 Clostridium perfringens str. 13 988773 NP_561436.1 CDS CPE0520 NC_003366.1 647185 647991 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 647185..647991 Clostridium perfringens str. 13 988774 NP_561437.1 CDS CPE0521 NC_003366.1 648362 648808 D similar to C-terminal of gpu:AP001507_220 BH0220 gene product from Bacillus halodurans (701 aa); 31.7% identity in 142 aa overlap; hypothetical protein 648362..648808 Clostridium perfringens str. 13 988775 NP_561438.1 CDS CPE0522 NC_003366.1 648983 649255 D similar to gpu:AP001507_222 BH0222 gene product from Bacillus halodurans (89 aa); 41.7% identity in 84 aa overlap; hypothetical protein 648983..649255 Clostridium perfringens str. 13 988776 NP_561439.1 CDS ulaA NC_003366.1 649296 650567 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 649296..650567 Clostridium perfringens str. 13 988777 NP_561440.1 CDS CPE0524 NC_003366.1 650923 651717 D similar to gpu:AP001516_88 BH2659 gene product from Bacillus halodurans (257 aa); 29.1% identity in 258 aa overlap; HAD hydrolase 650923..651717 Clostridium perfringens str. 13 988778 NP_561441.1 CDS CPE0525 NC_003366.1 651851 652297 R similar to gpu:AP001517_194 transcriptional regulator from Bacillus halodurans (151 aa); 24.4% identity in 119 aa overlap; MarR family; MarR family transcriptional regulator complement(651851..652297) Clostridium perfringens str. 13 988779 NP_561442.1 CDS CPE0526 NC_003366.1 652622 654919 D similar to gp:SC7A8_2 ABC transporter from Streptomyces coelicolor A3(2) (577 aa); 42% identity in 531 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 652622..654919 Clostridium perfringens str. 13 988780 NP_561443.1 CDS CPE0527 NC_003366.1 654912 656768 D similar to gp:SC7A8_3 ABC transporter from Streptomyces coelicolor A3(2) (642 aa); 49.2% identity in 594 aa overlap. 5 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 654912..656768 Clostridium perfringens str. 13 988781 NP_561444.1 CDS CPE0528 NC_003366.1 657262 658143 D no significant homology.; hypothetical protein 657262..658143 Clostridium perfringens str. 13 988782 NP_561445.1 CDS CPE0529 NC_003366.1 658398 659447 D similar to gp:AF132735_8 malate permease from Clostridium cellulovorans (290 aa); 24% identity in 254 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; transporter, auxin efflux carrier family 658398..659447 Clostridium perfringens str. 13 988783 NP_561446.1 CDS ldhD NC_003366.1 659756 660754 D Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes; D-lactate dehydrogenase 659756..660754 Clostridium perfringens str. 13 988784 NP_561447.1 CDS CPE0531 NC_003366.1 661050 662600 D similar to pir:A70009 two-component sensor histidine kinase homolog yufL from Bacillus subtilis (533 aa); 28.7% identity in 492 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; sensor histidine kinase 661050..662600 Clostridium perfringens str. 13 988785 NP_561448.1 CDS CPE0532 NC_003366.1 662600 663268 D similar to pir:B70009 two-component response regulator [YufL] homolog yufM from Bacillus subtilis (235 aa); 38.2% identity in 217 aa overlap; two-component response regulator 662600..663268 Clostridium perfringens str. 13 988786 NP_561449.1 CDS CPE0533 NC_003366.1 663349 663528 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 663349..663528 Clostridium perfringens str. 13 988787 NP_561450.1 CDS CPE0534 NC_003366.1 663686 664216 D no significant homology.; hypothetical protein 663686..664216 Clostridium perfringens str. 13 988788 NP_561451.1 CDS CPE0535 NC_003366.1 665353 665994 D similar to pir:F81434 probable integral membrane protein Cj0167c from Campylobacter jejuni (strain NCTC 11168) (187 aa); 43.5% identity in 186 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 665353..665994 Clostridium perfringens str. 13 988789 NP_561452.1 CDS CPE0536 NC_003366.1 666446 667372 D similar to pir:C64895 hypothetical protein b1432 from Escherichia coli (402 aa); 27.9% identity in 305 aa overlap. Also similar to pir:C72305 transposase, IS605-TnpB family from Thermotoga maritima (strain MSB8); transposase 666446..667372 Clostridium perfringens str. 13 988790 NP_561453.1 CDS CPE0537 NC_003366.1 667372 667644 D similar to gp:CPIS1136_1 C.perfringens IS1136 DNA from Clostridium perfringens (122 aa); 59.3% identity in 91 aa overlap; IS1136; transposase 667372..667644 Clostridium perfringens str. 13 988791 NP_561454.1 CDS CPE0538 NC_003366.1 667806 668219 D no significant homology.; hypothetical protein 667806..668219 Clostridium perfringens str. 13 988792 NP_561455.1 CDS CPE0539 NC_003366.1 668530 669645 D similar to sp:4HDB_CLOKL NAD-DEPENDENT 4-HYDROXYBUTYRATE DEHYDROGENASE (EC 1.1.1.61) (4HBD from Clostridium kluyveri (371 aa); 47.2% identity in 371 aa overlap. 1 transmembrane region was found by PSORT; NAD-dependent 4-hydroxybutyrate dehydrogenase 668530..669645 Clostridium perfringens str. 13 988793 NP_561456.1 CDS CPE0540 NC_003366.1 669654 669842 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 669654..669842 Clostridium perfringens str. 13 988794 NP_561457.1 CDS CPE0541 NC_003366.1 669878 670558 D similar to pir:A75167 hypothetical protein PAB0333 from Pyrococcus abyssi (strain Orsay) (259 aa); 24.4% identity in 205 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; TrkA domain-containing protein 669878..670558 Clostridium perfringens str. 13 988795 NP_561458.1 CDS CPE0542 NC_003366.1 670673 671125 R no significant homology.; MarR family transcriptional regulator complement(670673..671125) Clostridium perfringens str. 13 988796 NP_561459.1 CDS CPE0543 NC_003366.1 671379 672512 D similar to gp:AF051356_3 permease from Streptococcus mutans (364 aa); 27.9% identity in 319 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; permease 671379..672512 Clostridium perfringens str. 13 988797 NP_561460.1 CDS CPE0544 NC_003366.1 672917 674308 D similar to gpu:AE004180_4 proton/peptide symporter family protein from Vibrio cholerae (514 aa); 33.2% identity in 407 aa overlap. 8 transmembrane regions were found by PSORT.; proton/peptide symporter 672917..674308 Clostridium perfringens str. 13 988798 NP_561461.1 CDS CPE0545 NC_003366.1 674471 674686 R no significant homology.; hypothetical protein complement(674471..674686) Clostridium perfringens str. 13 988799 NP_561462.1 CDS CPE0546 NC_003366.1 674700 674930 R no significant homology.; hypothetical protein complement(674700..674930) Clostridium perfringens str. 13 988800 NP_561463.1 CDS CPE0547 NC_003366.1 675180 676730 D similar to C-terminal of pir:C70319 nitrite reductase (NAD(P)H) large subunit from Aquifex aeolicus (1002 aa); 24.8% identity in 452 aa overlap; nitrite/sulfite reductase-like protein 675180..676730 Clostridium perfringens str. 13 988801 NP_561464.1 CDS speD NC_003366.1 677043 677858 D S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 677043..677858 Clostridium perfringens str. 13 988802 NP_561465.1 CDS dclY NC_003366.1 677876 679330 D similar to sp:DCLY_BACSU LYSINE DECARBOXYLASE (EC 4.1.1.18) (LDC) from Bacillus subtilis (490 aa); 44.1% identity in 479 aa overlap. 1 transmembrane region was found by PSORT; Orn/Lys/Arg decarboxylase 677876..679330 Clostridium perfringens str. 13 988803 NP_561466.1 CDS speE NC_003366.1 679345 680196 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 679345..680196 Clostridium perfringens str. 13 988804 NP_561467.1 CDS speB NC_003366.1 680183 681040 D similar to pir:H70057 agmatinase homolog ywhG from Bacillus subtilis (290 aa); 48% identity in 271 aa overlap; agmatinase 680183..681040 Clostridium perfringens str. 13 988805 NP_561468.1 CDS CPE0552 NC_003366.1 681358 681621 R similar to pir:G69983 hypothetical protein ysdA from Bacillus subtilis (89 aa); 46.9% identity in 64 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(681358..681621) Clostridium perfringens str. 13 988806 NP_561469.1 CDS nanJ NC_003366.1 681830 685351 D similar to sp:NANH_CLOSE SIALIDASE PRECURSOR (EC 3.2.1.18) (NEURAMINIDASE) from Clostridium septicum (1014 aa); 50.9% identity in 953 aa overlap. N-terminal signal sequence was found by PSORT; exo-alpha-sialidase 681830..685351 Clostridium perfringens str. 13 988807 NP_561470.1 CDS CPE0554 NC_003366.1 685497 686138 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 685497..686138 Clostridium perfringens str. 13 988808 NP_561471.1 CDS CPE0555 NC_003366.1 686246 688915 R similar to sp:ATCU_BACSU POTENTIAL COPPER-TRANSPORTING ATPASE (EC 3.6.1.36) from Bacillus subtilis (803 aa); 51.6% identity in 808 aa overlap. 7 transmembrane regions were found by PSORT.; copper-translocating P-type ATPase complement(686246..688915) Clostridium perfringens str. 13 988809 NP_561472.1 CDS CPE0556 NC_003366.1 689207 689863 D similar to gp:AF112858_1 NAD(P)H dehydrogenase from Bacillus stearothermophilus (211 aa); 35.5% identity in 186 aa overlap; NAD(P)H dehydrogenase 689207..689863 Clostridium perfringens str. 13 988810 NP_561473.1 CDS CPE0557 NC_003366.1 691147 692283 D similar to gpu:AF249729_1 ATPase OpuCA from Listeria monocytogenes (397 aa); 47.5% identity in 354 aa overlap; ATP-binding protein; glycine betaine/carnitine/choline ABC transporter 691147..692283 Clostridium perfringens str. 13 988811 NP_561474.1 CDS CPE0558 NC_003366.1 692276 693829 D similar to pir:T44634 choline transporter from Streptococcus pneumoniae (506 aa); 34.7% identity in 502 aa overlap. 7 transmembrane regions were found by PSORT.; osmoprotectant-binding protein; glycine betaine/carnitine/choline ABC transporter 692276..693829 Clostridium perfringens str. 13 988812 NP_561475.1 CDS sigV NC_003366.1 694087 694662 D similar to sp:SIGV_BACSU RNA POLYMERASE SIGMA FACTOR SIGV from Bacillus subtilis (166 aa); 34.1% identity in 138 aa overlap; RNA polymerase sigma-70 factor 694087..694662 Clostridium perfringens str. 13 988813 NP_561476.1 CDS CPE0560 NC_003366.1 694655 695743 D no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 694655..695743 Clostridium perfringens str. 13 988814 NP_561477.1 CDS CPE0561 NC_003366.1 696091 697512 D similar to gpu:AE004175_1 PTS system, trehalose-specific IIBC component from Vibrio cholerae (478 aa); 52.9% identity in 367 aa overlap. 9 transmembrane regions were found by PSORT.; trehalose-specific IIBC component; PTS system transporter 696091..697512 Clostridium perfringens str. 13 988815 NP_561478.1 CDS CPE0562 NC_003366.1 697716 699383 D similar to gp:AF216220_1 alpha-glucosidase from Bacillus sp. DG0303 (562 aa); 62.5% identity in 552 aa overlap; alpha-glucosidase 697716..699383 Clostridium perfringens str. 13 988816 NP_561479.1 CDS treR NC_003366.1 699647 700354 D similar to sp:TRER_BACSU TREHALOSE OPERON TRANSCRIPTIONAL REPRESSOR from Bacillus subtilis (238 aa); 54.5% identity in 233 aa overlap; transcriptional regulator 699647..700354 Clostridium perfringens str. 13 988817 NP_561480.1 CDS spoVD NC_003366.1 700806 702992 R similar to gpu:AP001516_1 stage V sporulation protein (soprulation specific penicillin-binding protein) (spore cortex) from Bacillus halodurans (644 aa); 38.6% identity in 360 aa overlap. N-terminal signal sequence was found by PSORT; stage V sporulation protein D complement(700806..702992) Clostridium perfringens str. 13 988818 NP_561481.1 CDS CPE0565 NC_003366.1 703337 704005 D similar to pir:MUBPA7 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) from phage T7 (151 aa); 38.7% identity in 119 aa overlap. 1 transmembrane region was found by PSORT; phage related; N-acetylmuramoyl-L-alanine amidase 703337..704005 Clostridium perfringens str. 13 988819 NP_561482.1 CDS ribB NC_003366.1 704572 705672 D similar to sp:RIBD_ACTPL RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD [INCLUDES: DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE (EC 3.5.4.26) (RIBOFLAVIN-SPECIFIC DEAMINASE) from Actinobacillus pleuropneumoniae (376 aa); 44.8% identity in 357 aa overlap; riboflavin biosynthesis protein RibD 704572..705672 Clostridium perfringens str. 13 988820 NP_561483.1 CDS risA NC_003366.1 705691 706344 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 705691..706344 Clostridium perfringens str. 13 988821 NP_561484.1 CDS ribA NC_003366.1 706550 707695 D similar to gpu:AP001512_143 GTP cyclohydrolase II / 3, 4-dihydroxy-2-butanone 4-phosphate synthase from Bacillus halodurans (404 aa); 63.1% identity in 396 aa overlap; riboflavin biosynthesis protein RibA 706550..707695 Clostridium perfringens str. 13 988822 NP_561485.1 CDS ribH NC_003366.1 707810 708271 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 707810..708271 Clostridium perfringens str. 13 988823 NP_561486.1 CDS CPE0570 NC_003366.1 708394 709266 R similar to C-terminal of gp:AF154013_1 surface protein PspC from Streptococcus pneumoniae (730 aa); 52.5% identity in 217 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(708394..709266) Clostridium perfringens str. 13 988824 NP_561487.1 CDS CPE0571 NC_003366.1 709370 709777 R similar to sp:YUGU_BACSU HYPOTHETICAL 16.3 KDA PROTEIN IN TGL-PGI INTERGENIC REGION from Bacillus subtilis (142 aa); 52.8% identity in 125 aa overlap; hypothetical protein complement(709370..709777) Clostridium perfringens str. 13 988825 NP_561488.1 CDS CPE0572 NC_003366.1 710160 710423 D similar to pir:F72407 hypothetical protein from Thermotoga maritima (strain MSB8) (92 aa); 43.8% identity in 80 aa overlap; hypothetical protein 710160..710423 Clostridium perfringens str. 13 988826 NP_561489.1 CDS CPE0573 NC_003366.1 710699 712918 D no significant homology.; hypothetical protein 710699..712918 Clostridium perfringens str. 13 988827 NP_561490.1 CDS CPE0574 NC_003366.1 713265 714854 D similar to pir:D69796 two-component sensor histidine kinase homolog yesM from Bacillus subtilis (577 aa); 34.3% identity in 327 aa overlap. 1 transmembrane region was found by PSORT; sensor histidine kinase 713265..714854 Clostridium perfringens str. 13 988828 NP_561491.1 CDS CPE0575 NC_003366.1 714866 716455 D similar to gpu:AP001511_12 BH1123 gene product from Bacillus halodurans (526 aa); 25% identity in 516 aa overlap. Also similar to pir:E69796 two-component response regulator [YesM] homolog yesN (368 aa) from Bacillus subtilis; AraC family transcriptional regulator 714866..716455 Clostridium perfringens str. 13 988829 NP_561492.1 CDS CPE0576 NC_003366.1 716608 717993 D similar to pir:T35670 hypothetical protein SC7B7.02 SC7B7.02 from Streptomyces coelicolor (469 aa); 28.7% identity in 397 aa overlap. N-terminal signal sequence was found by PSORT; binding protein; ABC transporter 716608..717993 Clostridium perfringens str. 13 988830 NP_561493.1 CDS CPE0577 NC_003366.1 718072 719007 D similar to sp:YURN_BACSU HYPOTHETICAL ABC TRANSPORTER PERMEase YURN from Bacillus subtilis (292 aa); 35.6% identity in 267 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permease; ABC transporter permease 718072..719007 Clostridium perfringens str. 13 988831 NP_561494.1 CDS CPE0578 NC_003366.1 719139 719882 D similar to pir:T35672 probable transmembrane transport protein from Streptomyces coelicolor (302 aa); 37% identity in 246 aa overlap. 5 transmembrane regions were found by PSORT.; permease; ABC transporter 719139..719882 Clostridium perfringens str. 13 988832 NP_561495.1 CDS CPE0579 NC_003366.1 720118 720813 D similar to sp:YDJZ_ECOLI HYPOTHETICAL 26.2 KDA PROTEIN IN XTHA-GDHA INTERGENIC REGION from Escherichia coli (235 aa); 55.7% identity in 219 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; DedA family protein 720118..720813 Clostridium perfringens str. 13 988833 NP_561496.1 CDS CPE0580 NC_003366.1 720785 721915 D similar to pir:B69313 iron-sulfur binding reductase homolog from Archaeoglobus fulgidus (366 aa); 28% identity in 322 aa overlap; iron-sulfur binding reductase 720785..721915 Clostridium perfringens str. 13 988834 NP_561497.1 CDS CPE0581 NC_003366.1 722078 722665 D similar to sp:Y460_PYRHO HYPOTHETICAL PROTEIN PH0460 from Pyrococcus horikoshii (188 aa); 38.8% identity in 103 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 722078..722665 Clostridium perfringens str. 13 988835 NP_561498.1 CDS CPE0582 NC_003366.1 722951 723583 D similar to gp:SCD84_4 hypothetical protein SCD84.04 from Streptomyces coelicolor A3(2) (206 aa); 32.9% identity in 207 aa overlap; hypothetical protein 722951..723583 Clostridium perfringens str. 13 988836 NP_561499.1 CDS CPE0583 NC_003366.1 723576 724574 D similar to gp:SCD84_5 phosphate transport protein from Streptomyces coelicolor A3(2) (332 aa); 44.1% identity in 306 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; phosphate ABC transporter permease 723576..724574 Clostridium perfringens str. 13 988837 NP_561500.1 CDS CPE0584 NC_003366.1 725006 726898 R similar to pir:H69626 PTS fructose-specific enzyme IIBC component fruA from Bacillus subtilis (635 aa); 57.1% identity in 627 aa overlap. 7 transmembrane regions were found by PSORT.; fructose-specific enzyme IIBC component; PTS system transporter complement(725006..726898) Clostridium perfringens str. 13 988838 NP_561501.1 CDS fruB NC_003366.1 726902 727822 R similar to sp:K1PF_BACSU 1-PHOSPHOFRUCTOKINASE (EC 2.7.1.56) (FRUCTOSE 1-PHOSPHATE KINASE) from Bacillus subtilis (303 aa); 49.3% identity in 302 aa overlap; 1-phosphofructokinase complement(726902..727822) Clostridium perfringens str. 13 988839 NP_561502.1 CDS fruR NC_003366.1 727822 728568 R similar to pir:B69627 transcription repressor of fructose operon fruR from Bacillus subtilis (251 aa); 48.4% identity in 246 aa overlap; transcriptional regulator complement(727822..728568) Clostridium perfringens str. 13 988840 NP_561503.1 CDS CPE0587 NC_003366.1 728859 729182 D no significant homology.; hypothetical protein 728859..729182 Clostridium perfringens str. 13 988841 NP_561504.1 CDS CPE0588 NC_003366.1 729363 730463 R similar to gp:SPDACAO_1 membrane protein from Streptococcus pneumoniae (369 aa); 29.6% identity in 358 aa overlap; permease complement(729363..730463) Clostridium perfringens str. 13 988842 NP_561505.1 CDS CPE0589 NC_003366.1 730721 731380 D similar to pir:C72372 pyrazinamidase/nicotinamidase-related protein from Thermotoga maritima (strain MSB8) (214 aa); 30.2% identity in 159 aa overlap. 1 transmembrane region was found by PSORT; isochorismatase 730721..731380 Clostridium perfringens str. 13 988843 NP_561506.1 CDS CPE0590 NC_003366.1 731757 733070 D similar to pir:T44296 hypothetical protein from Bacillus halodurans (424 aa); 38.3% identity in 420 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 731757..733070 Clostridium perfringens str. 13 988844 NP_561507.1 CDS CPE0591 NC_003366.1 733374 734297 D similar to gpu:AP001516_56 glutaminase from Bacillus halodurans (308 aa); 44.3% identity in 305 aa overlap. 1 transmembrane region was found by PSORT; glutaminase 733374..734297 Clostridium perfringens str. 13 988845 NP_561508.1 CDS CPE0592 NC_003366.1 734586 735311 D similar to pir:G71281 probable Mg2+ transport protein (mgtC) from Treponema pallidum (224 aa); 29.6% identity in 213 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; Mg2+ transporter 734586..735311 Clostridium perfringens str. 13 988846 NP_561509.1 CDS sfsA NC_003366.1 741120 741812 D Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 741120..741812 Clostridium perfringens str. 13 988851 NP_561510.1 CDS CPE0594 NC_003366.1 742291 742764 D similar to C-terminal of gpu:AE004122_1 MutT/nudix family protein from Vibrio cholerae (269 aa); 32.1% identity in 162 aa overlap; NUDIX family hydrolase 742291..742764 Clostridium perfringens str. 13 988852 NP_561511.1 CDS lysA NC_003366.1 743070 744470 D similar to sp:DCDA_BACSU DIAMINOPIMELATE DECARBOXYLASE (EC 4.1.1.20) (DAP DECARBOXYLASE) from Bacillus subtilis (441 aa); 50.5% identity in 422 aa overlap; diaminopimelate decarboxylase 743070..744470 Clostridium perfringens str. 13 988853 NP_561512.1 CDS CPE0596 NC_003366.1 744879 745145 D no significant homology.; hypothetical protein 744879..745145 Clostridium perfringens str. 13 988854 NP_561513.1 CDS sipS NC_003366.1 745148 745678 D similar to sp:LEP_PHOLA SIGNAL PEPTIDASE I (EC 3.4.21.89) (SPASE I) (LEADER PEPTIDASE I) from Phormidium laminosum (203 aa); 47.4% identity in 135 aa overlap. N-terminal signal sequence was found by PSORT; signal peptidase type I 745148..745678 Clostridium perfringens str. 13 988855 NP_561514.1 CDS ftsH NC_003366.1 745703 747856 D similar to sp:FTH3_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 3 (EC 3.4.24.-) from Synechocystis sp. (strain PCC 6803) (628 aa); 53.1% identity in 567 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; ATP-dependent metalloprotease FtsH 745703..747856 Clostridium perfringens str. 13 988856 NP_561515.1 CDS CPE0599 NC_003366.1 748076 750196 D similar to pir:H70040 hypothetical protein yvgS from Bacillus subtilis (774 aa); 30.2% identity in 660 aa overlap; hypothetical protein 748076..750196 Clostridium perfringens str. 13 988857 NP_561516.1 CDS CPE0600 NC_003366.1 750652 751488 D similar to sp:YQIX_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER EXTRACELLULAR BINDING PROTEIN YQIX PRECURSOR from Bacillus subtilis (255 aa); 38.3% identity in 256 aa overlap; binding protein; amino acid ABC transporter 750652..751488 Clostridium perfringens str. 13 988858 NP_561517.1 CDS CPE0601 NC_003366.1 751519 752190 D similar to pir:A72357 amino acid ABC transporter, permease from Thermotoga maritima (strain MSB8) (216 aa); 44.4% identity in 214 aa overlap. 3 transmembrane regions were found by PSORT.; permease; amino acid ABC transporter 751519..752190 Clostridium perfringens str. 13 988859 NP_561518.1 CDS CPE0602 NC_003366.1 752187 752909 D similar to gpu:AP001512_50 ABC transporter (ATP-binding protein) from Bacillus halodurans (240 aa); 65.4% identity in 240 aa overlap; ATP-binding protein; amino acid ABC transporter 752187..752909 Clostridium perfringens str. 13 988860 NP_561519.1 CDS CPE0603 NC_003366.1 753127 754935 D similar to pir:A72221 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (593 aa); 39.3% identity in 356 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 753127..754935 Clostridium perfringens str. 13 988861 NP_561520.1 CDS CPE0604 NC_003366.1 755187 757031 D similar to pir:A72221 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (593 aa); 31.4% identity in 519 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 755187..757031 Clostridium perfringens str. 13 988862 NP_561521.1 CDS CPE0605 NC_003366.1 757134 758315 R similar to pir:H75109 cation efflux system protein (zinc/cadmium) PAB0462 from Pyrococcus abyssi (strain Orsay) (283 aa); 30.9% identity in 272 aa overlap. 6 transmembrane regions were found by PSORT.; cation efflux family protein complement(757134..758315) Clostridium perfringens str. 13 988863 NP_561522.1 CDS entD NC_003366.1 758558 760465 D multiple regions are similar to gp:AF192766_1 enterotoxin from Bacillus cereus (419 aa); 33.6% identity in 211 aa overlap. Also similar to many N-acetylmuramoyl-L alanine amidases. N-terminal signal sequence was found by PSORT; enterotoxin 758558..760465 Clostridium perfringens str. 13 988864 NP_561523.1 CDS CPE0607 NC_003366.1 760607 761902 D catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 2 760607..761902 Clostridium perfringens str. 13 988865 NP_561524.1 CDS CPE0608 NC_003366.1 761995 762189 R no significant homology.; hypothetical protein complement(761995..762189) Clostridium perfringens str. 13 988866 NP_561525.1 CDS CPE0609 NC_003366.1 762581 763420 D similar to gpu:AP001508_220 BH0497 gene product from Bacillus halodurans (247 aa); 35% identity in 277 aa overlap; HAD hydrolase 762581..763420 Clostridium perfringens str. 13 988867 NP_561526.1 CDS CPE0610 NC_003366.1 763637 766966 R similar to sp:YDGH_BACSU MEMBRANE PROTEIN YDGH from Bacillus subtilis (885 aa); 28.4% identity in 684 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; hypothetical protein complement(763637..766966) Clostridium perfringens str. 13 988868 NP_561527.1 CDS CPE0611 NC_003366.1 767227 768822 R similar to sp:RF3_SYNY3 PEPTIDE CHAIN RELEASE FACTOR 3 (RF-3) from Synechocystis sp. (strain PCC 6803) (547 aa); 52.1% identity in 511 aa overlap. 1 transmembrane region was found by PSORT; peptide chain release factor 3 complement(767227..768822) Clostridium perfringens str. 13 988869 NP_561528.1 CDS CPE0612 NC_003366.1 769036 769641 R no significant homology.; hypothetical protein complement(769036..769641) Clostridium perfringens str. 13 988870 NP_561529.1 CDS CPE0613 NC_003366.1 770017 770817 D similar to gpu:AE004216_3 conserved hypothetical protein from Vibrio cholerae (273 aa); 47.4% identity in 266 aa overlap; hypothetical protein 770017..770817 Clostridium perfringens str. 13 988871 NP_561530.1 CDS rfbP NC_003366.1 770858 771520 D similar to prf:2312306A undecaprenyl phosphate galactosephosphotransferase from Anabaena sp. (252 aa); 52.8% identity in 195 aa overlap. 1 transmembrane region was found by PSORT; undecaprenyl phosphate galactosephosphotransferase 770858..771520 Clostridium perfringens str. 13 988872 NP_561531.1 CDS rfbN NC_003366.1 771521 772435 D similar to sp:RFBN_SALTY RHAMNOSYLTRANSFERASE RFBN (EC 2.4.1.-) from Salmonella typhimurium (314 aa); 34.9% identity in 304 aa overlap; rhamnosyl transferase 771521..772435 Clostridium perfringens str. 13 988873 NP_561532.1 CDS rfbA NC_003366.1 772458 773339 D similar to pir:C69106 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) from Methanobacterium thermoautotrophicum (292 aa); 65.2% identity in 287 aa overlap. 1 transmembrane region was found by PSORT; glucose-1-phosphate thymidylyltransferase 772458..773339 Clostridium perfringens str. 13 988874 NP_561533.1 CDS rfbC NC_003366.1 773532 774014 D similar to pir:B69106 dTDP-4-dehydrorhamnose 3,5-epimerase from Methanobacterium thermoautotrophicum (strain Delta H) (185 aa); 59.4% identity in 180 aa overlap; dTDP-4-dehydrorhamnose 3,5-epimerase 773532..774014 Clostridium perfringens str. 13 988875 NP_561534.1 CDS rfbD NC_003366.1 774028 774912 D similar to pir:D69106 dTDP-4-dehydrorhamnose reductase from Methanobacterium thermoautotrophicum (strain Delta H) (280 aa); 40% identity in 290 aa overlap; dTDP-4-dehydrorhamnose reductase 774028..774912 Clostridium perfringens str. 13 988876 NP_561535.1 CDS rfbB NC_003366.1 774940 775989 D similar to pir:H69105 dTDP-glucose 4,6-dehydratase from Methanobacterium thermoautotrophicum (strain Delta H) (336 aa); 56% identity in 348 aa overlap; dTDP-glucose 4,6-dehydratase 774940..775989 Clostridium perfringens str. 13 988877 NP_561536.1 CDS CPE0620 NC_003366.1 776014 777228 D no significant homology. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; hypothetical protein 776014..777228 Clostridium perfringens str. 13 988878 NP_561537.1 CDS CPE0621 NC_003366.1 777225 778073 D similar to gpu:AP001519_228 glycosyltransferase from Bacillus halodurans (303 aa); 26.2% identity in 221 aa overlap; glycosyltransferase 777225..778073 Clostridium perfringens str. 13 988879 NP_561538.1 CDS CPE0622 NC_003366.1 778167 778907 D pertially similar to gp:AB038490_1 fukutin from Homo sapiens (461 aa); 28.9% identity in 187 aa overlap. Also partially similar to gp:AF052516_2 hemolysin erythrocyte lysis protein from Provotella intermedia; hypothetical protein 778167..778907 Clostridium perfringens str. 13 988880 NP_561539.1 CDS CPE0623 NC_003366.1 778916 780367 D similar to gp:AF106539_1 unknown from Streptococcus pneumoniae (495 aa); 30.2% identity in 473 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; capsular polysaccharide synthesis protein 778916..780367 Clostridium perfringens str. 13 988881 NP_561540.1 CDS CPE0624 NC_003366.1 780389 782812 D partially similar to gp:AF154026_1 surface protein PspC from Streptococcus pneumoniae (752 aa); 42.5% identity in 214 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 780389..782812 Clostridium perfringens str. 13 988882 NP_561541.1 CDS CPE0625 NC_003366.1 782941 784593 D partially similar to gp:AF154026_1 surface protein PspC from Streptococcus pneumoniae (752 aa); 43.4% identity in 272 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 782941..784593 Clostridium perfringens str. 13 988883 NP_561542.1 CDS CPE0626 NC_003366.1 784795 786159 D partially similar to pir:A41971 surface protein pspA precursor from Streptococcus pneumoniae (619 aa); 46.3% identity in 203 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 784795..786159 Clostridium perfringens str. 13 988884 NP_561543.1 CDS licA NC_003366.1 786364 788232 D C-terminal region is highly similar to gp:AF036951_1 choline kinase from Streptococcus pneumoniae (262 aa); 43.8% identity in 258 aa overlap; choline kinase 786364..788232 Clostridium perfringens str. 13 988885 NP_561544.1 CDS licB NC_003366.1 788258 789226 D similar to sp:LICB_HAEIN LICB PROTEIN from Haemophilus influenzae Rd (292 aa); 33.3% identity in 300 aa overlap. 7 transmembrane regions were found by PSORT.; lic-1 operon protein 788258..789226 Clostridium perfringens str. 13 988886 NP_561545.1 CDS licC NC_003366.1 789373 790056 D similar to sp:LICC_HAEIN LICC PROTEIN from Haemophilus influenzae Rd (233 aa); 35.3% identity in 221 aa overlap; lic-1 operon protein 789373..790056 Clostridium perfringens str. 13 988887 NP_561546.1 CDS CPE0630 NC_003366.1 790175 791467 R partially similar to gp:AF154026_1 surface protein PspC from Streptococcus pneumoniae (752 aa); 49.4% identity in 233 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(790175..791467) Clostridium perfringens str. 13 988888 NP_561547.1 CDS CPE0631 NC_003366.1 791586 792605 R similar to gp:EFA276231_1 PSR protein from Enterococcus faecalis (390 aa); 31.3% identity in 272 aa overlap. N-terminal signal sequence was found by PSORT; PBP5 synthesis regulator protein complement(791586..792605) Clostridium perfringens str. 13 988889 NP_561548.1 CDS brnQ NC_003366.1 792885 794159 R similar to gp:CLOSERTRNA_2 sodium-coupled branched-chain amino acid carrier from Clostridium perfringens (338 aa); 34.3% identity in 335 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; branched chain amino acid ABC transporter carrier protein complement(792885..794159) Clostridium perfringens str. 13 988890 NP_561549.1 CDS trpS NC_003366.1 794912 795910 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 794912..795910 Clostridium perfringens str. 13 988891 NP_561550.1 CDS CPE0634 NC_003366.1 796572 797111 D no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 796572..797111 Clostridium perfringens str. 13 988892 NP_561551.1 CDS CPE0635 NC_003366.1 797206 798318 D anSME; radical SAM enzyme; oxidizes both cysteine and serine residues to C-alpha-formylglycine in sulfatase enzyme protein substrates; anaerobic sulfatase-maturase 797206..798318 Clostridium perfringens str. 13 988893 NP_561552.1 CDS CPE0636 NC_003366.1 798746 799576 D similar to gpu:AE004350_3 phosphate ABC transporter, periplasmic phosphate-binding protein from Vibrio cholerae (299 aa); 48.3% identity in 230 aa overlap. N-terminal signal sequence was found by PSORT; binding protein; phosphate ABC transporter substrate-binding protein 798746..799576 Clostridium perfringens str. 13 988894 NP_561553.1 CDS CPE0637 NC_003366.1 799800 800618 D similar to gpu:AE004350_3 phosphate ABC transporter, periplasmic phosphate-binding protein from Vibrio cholerae (299 aa); 48.8% identity in 240 aa overlap; binding protein; phosphate ABC transporter substrate-binding protein 799800..800618 Clostridium perfringens str. 13 988895 NP_561554.1 CDS CPE0638 NC_003366.1 800700 801587 D similar to gpu:AE004350_4 phosphate ABC transporter, permease from Vibrio cholerae (327 aa); 54.3% identity in 278 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permease; phosphate ABC transporter permease 800700..801587 Clostridium perfringens str. 13 988896 NP_561555.1 CDS CPE0639 NC_003366.1 801590 802414 D similar to gpu:AE004350_5 phosphate ABC transporter, permease from Vibrio cholerae (289 aa); 53.1% identity in 273 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permease; phosphate ABC transporter permease 801590..802414 Clostridium perfringens str. 13 988897 NP_561556.1 CDS CPE0640 NC_003366.1 802432 803193 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 802432..803193 Clostridium perfringens str. 13 988898 NP_561557.1 CDS phoU NC_003366.1 803218 803871 D similar to pir:B70378 transcription regulator PhoU-like from Aquifex aeolicus (221 aa); 35% identity in 206 aa overlap; phosphate transporter PhoU 803218..803871 Clostridium perfringens str. 13 988899 NP_561558.1 CDS CPE0642 NC_003366.1 804031 804726 D similar to pir:D72228 response regulator DrrA from Thermotoga maritima (strain MSB8) (247 aa); 50.6% identity in 231 aa overlap; DNA-binding response regulator 804031..804726 Clostridium perfringens str. 13 988900 NP_561559.1 CDS CPE0643 NC_003366.1 804897 805520 R no significant homology.; hypothetical protein complement(804897..805520) Clostridium perfringens str. 13 988901 NP_561560.1 CDS flaV NC_003366.1 805554 805970 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(805554..805970) Clostridium perfringens str. 13 988902 NP_561561.1 CDS gltX NC_003366.1 806384 808042 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(806384..808042) Clostridium perfringens str. 13 988903 NP_561562.1 CDS CPE0646 NC_003366.1 808295 808450 R no significant homology.; hypothetical protein complement(808295..808450) Clostridium perfringens str. 13 988904 NP_561563.1 CDS CPE0647 NC_003366.1 808605 809693 R no significant homology. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein complement(808605..809693) Clostridium perfringens str. 13 988905 NP_561564.1 CDS gerKA NC_003366.1 809789 811210 D similar to gpu:AP001513_207 spore germination protein KA from Bacillus halodurans (515 aa); 36.2% identity in 425 aa overlap. 7 transmembrane regions were found by PSORT.; spore germination protein KA 809789..811210 Clostridium perfringens str. 13 988906 NP_561565.1 CDS gerBC NC_003366.1 811185 812309 D similar to pir:S38904 hypothetical protein 2 from Clostridium pasteurianum (383 aa); 20.8% identity in 342 aa overlap; spore germination protein B3 811185..812309 Clostridium perfringens str. 13 988907 NP_561566.1 CDS CPE0650 NC_003366.1 812504 813637 D N-terminal region is similar to gp:AF150930_5 unknown from Thermoanaerobacter ethanolicus (169 aa); 54.3% identity in 164 aa overlap; ATPase AAA 812504..813637 Clostridium perfringens str. 13 988908 NP_561567.1 CDS CPE0651 NC_003366.1 813713 814126 D no significant homology.; hypothetical protein 813713..814126 Clostridium perfringens str. 13 988909 NP_561568.1 CDS tyrS NC_003366.1 814422 815642 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 814422..815642 Clostridium perfringens str. 13 988910 NP_561569.1 CDS CPE0653 NC_003366.1 816062 816754 D similar to pir:F75433 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (242 aa); 36.1% identity in 230 aa overlap; Ser/Thr protein phosphatase 816062..816754 Clostridium perfringens str. 13 988911 NP_561570.1 CDS relA NC_003366.1 816873 817664 D similar to gpu:AP001516_278 GTP pyrophosphokinase from Bacillus halodurans (211 aa); 57.1% identity in 205 aa overlap; relA/spoT family protein 816873..817664 Clostridium perfringens str. 13 988912 NP_561571.1 CDS CPE0655 NC_003366.1 817937 818722 D no significant homology.; hypothetical protein 817937..818722 Clostridium perfringens str. 13 988913 NP_561572.1 CDS CPE0656 NC_003366.1 818840 819955 D similar to pir:B72315 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (351 aa); 26.6% identity in 365 aa overlap; hypothetical protein 818840..819955 Clostridium perfringens str. 13 988914 NP_561573.1 CDS CPE0657 NC_003366.1 819969 821306 D similar to sp:Y929_THEMA HYPOTHETICAL PROTEIN TM0929 from Thermotoga maritima (strain MSB8) (397 aa); 27.4% identity in 347 aa overlap; hypothetical protein 819969..821306 Clostridium perfringens str. 13 988915 NP_561574.1 CDS CPE0658 NC_003366.1 821464 822855 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 821464..822855 Clostridium perfringens str. 13 988916 NP_561575.1 CDS CPE0659 NC_003366.1 823205 824698 D similar to sp:YJJI_HAEIN HYPOTHETICAL PROTEIN HI0521 from Haemophilus influenzae (strain Rd KW20) (514 aa); 46.9% identity in 499 aa overlap; hypothetical protein 823205..824698 Clostridium perfringens str. 13 988917 NP_561576.1 CDS CPE0660 NC_003366.1 824764 825528 D similar to sp:YJJW_ECOLI HYPOTHETICAL 31.5 KDA PROTEIN IN OSMY-DEOC INTERGENIC REGION (F287) from Escherichia coli (287 aa); 40.8% identity in 206 aa overlap; (4Fe-4S)-binding protein 824764..825528 Clostridium perfringens str. 13 988918 NP_561577.1 CDS CPE0661 NC_003366.1 825828 826343 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 825828..826343 Clostridium perfringens str. 13 988919 NP_561578.1 CDS CPE0662 NC_003366.1 826452 827255 R partially similar to pir:B70374 conserved hypothetical protein aq_854 from Aquifex aeolicus (545 aa); 29.3% identity in 208 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(826452..827255) Clostridium perfringens str. 13 988920 NP_561579.1 CDS CPE0663 NC_003366.1 827578 828888 R similar to gpu:AE003864_7 hypothetical protein from Xylella fastidiosa (460 aa); 20.5% identity in 414 aa overlap; F5/8 type C domain-containing protein complement(827578..828888) Clostridium perfringens str. 13 988921 NP_561580.1 CDS CPE0664 NC_003366.1 829607 829951 R no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein complement(829607..829951) Clostridium perfringens str. 13 988922 NP_561581.1 CDS CPE0665 NC_003366.1 830406 831137 D no significant homology.; hypothetical protein 830406..831137 Clostridium perfringens str. 13 988923 NP_561582.1 CDS CPE0666 NC_003366.1 831185 831457 D similar to pir:F75335 probable transposase from Deinococcus radiodurans (strain R1) (140 aa); 56.9% identity in 58 aa overlap. Probably truncated; transposase 831185..831457 Clostridium perfringens str. 13 988924 NP_561583.1 CDS CPE0667 NC_003366.1 831468 831821 D similar to N-terminal of pir:JC4292 probable transposase from thermophilic bacterium PS-3 (369 aa); 37.7% identity in 106 aa overlap. Probably truncated; IS13; transposase 831468..831821 Clostridium perfringens str. 13 988925 NP_561584.1 CDS CPE0668 NC_003366.1 831763 832623 D similar to gp:CDI131844_3 transposase from Clostridium difficile (408 aa); 47.4% identity in 270 aa overlap; transposase 831763..832623 Clostridium perfringens str. 13 988926 NP_561585.1 CDS CPE0669 NC_003366.1 832865 833872 D pertially similar to gp:AF047005_1 asparagine-rich protein from Plasmodium falciparum (728 aa); 28% identity in 236 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 832865..833872 Clostridium perfringens str. 13 988927 NP_561586.1 CDS leuS NC_003366.1 834018 836468 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(834018..836468) Clostridium perfringens str. 13 988928 NP_561587.1 CDS CPE0671 NC_003366.1 837243 837803 R similar to pir:T36466 mutT domain-containing protein from Streptomyces coelicolor (204 aa); 25.6% identity in 129 aa overlap; hypothetical protein complement(837243..837803) Clostridium perfringens str. 13 988929 NP_561588.1 CDS CPE0672 NC_003366.1 838095 838457 D no significant homology.; hypothetical protein 838095..838457 Clostridium perfringens str. 13 988930 NP_561589.1 CDS birA NC_003366.1 838662 839648 D similar to sp:BIRA_BACSU BIRA BIFUNCTIONAL PROTEIN [INCLUDES: BIOTIN OPERON REPRESSOR; BIOTIN-[ACETYL-COA-CARBOXYLASE] SYNTHETASE (EC 6.3.4.15) (BIOTIN-PROTEIN LIGASE)] from Bacillus subtilis (325 aa); 32.9% identity in 322 aa overlap; bifunctional biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase 838662..839648 Clostridium perfringens str. 13 988931 NP_561590.1 CDS CPE0674 NC_003366.1 839807 840892 D partially similar to pir:F75357 hypothetical protein from Deinococcus radiodurans (strain R1) (328 aa); 26% identity in 181 aa overlap.Also similar to many DNA helicases; HRDC domain-containing protein 839807..840892 Clostridium perfringens str. 13 988932 NP_561591.1 CDS CPE0675 NC_003366.1 840894 841061 D no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 840894..841061 Clostridium perfringens str. 13 988933 NP_561592.1 CDS CPE0676 NC_003366.1 841162 841896 D no significant homology. 5 transmembrane regions were found by PSORT.; hypothetical protein 841162..841896 Clostridium perfringens str. 13 988934 NP_561593.1 CDS CPE0677 NC_003366.1 842086 842391 D no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 842086..842391 Clostridium perfringens str. 13 988935 NP_561594.1 CDS dut NC_003366.1 842638 843288 D similar to sp:DUT_CHLPN DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE (EC 3.6.1.23) (DUTPASE) (DUTP PYROPHOSPHATASE) from Chlamydophila pneumoniae (strains CWL029 and AR39) (145 aa); 47.3% identity in 91 aa overlap; deoxyuridine 5`-triphosphate nucleotidohydrolase 842638..843288 Clostridium perfringens str. 13 988936 NP_561595.1 CDS thiC NC_003366.1 843791 845101 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 843791..845101 Clostridium perfringens str. 13 988937 NP_561596.1 CDS purL NC_003366.1 845339 849139 D similar to pir:G81961 phosphoribosylformylglycinamidine synthase (EC 6.3.5.3) NMA0445 from Neisseria meningitidis (group A strain Z2491) (1320 aa); 25.6% identity in 1056 aa overlap. 1 transmembrane region was found by PSORT; phosphoribosylformylglycinamidine synthase 845339..849139 Clostridium perfringens str. 13 988938 NP_561597.1 CDS purE NC_003366.1 849450 849929 D Catalyzes a step in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase catalytic subunit 849450..849929 Clostridium perfringens str. 13 988939 NP_561598.1 CDS purC NC_003366.1 849929 850636 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 849929..850636 Clostridium perfringens str. 13 988940 NP_561599.1 CDS purF NC_003366.1 850658 852103 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 850658..852103 Clostridium perfringens str. 13 988941 NP_561600.1 CDS purM NC_003366.1 852104 853105 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 852104..853105 Clostridium perfringens str. 13 988942 NP_561601.1 CDS purN NC_003366.1 853093 853707 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 853093..853707 Clostridium perfringens str. 13 988943 NP_561602.1 CDS purH NC_003366.1 853720 855225 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 853720..855225 Clostridium perfringens str. 13 988944 NP_561603.1 CDS purD NC_003366.1 855632 856591 D similar to sp:PUR2_AQUAE PHOSPHORIBOSYLAMINE-GLYCINE LIGASE (EC 6.3.4.13) (GARS) (GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE) (PHOSPHORIBOSYLGLYCINAMIDE SYNTHETASE) from Aquifex aeolicus (424 aa); 51.3% identity in 413 aa overlap; phosphoribosylamine--glycine ligase 855632..856591 Clostridium perfringens str. 13 988945 NP_561604.1 CDS CPE0688 NC_003366.1 857504 857866 D similar to gpu:AE004430_11 conserved hypothetical protein from Vibrio cholerae (143 aa); 47.4% identity in 116 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 857504..857866 Clostridium perfringens str. 13 988947 NP_561605.1 CDS CPE0689 NC_003366.1 858399 858941 D similar to sp:Y746_METJA HYPOTHETICAL PROTEIN MJ0746 from Methanococcus jannaschii (141 aa); 43.4% identity in 143 aa overlap; hypothetical protein 858399..858941 Clostridium perfringens str. 13 988948 NP_561606.1 CDS argH NC_003366.1 859074 860474 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(859074..860474) Clostridium perfringens str. 13 988949 NP_561607.1 CDS argG NC_003366.1 860568 861785 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(860568..861785) Clostridium perfringens str. 13 988950 NP_561608.1 CDS CPE0692 NC_003366.1 862390 863037 D similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 862390..863037 Clostridium perfringens str. 13 988951 NP_561609.1 CDS CPE0693 NC_003366.1 863437 868497 D similar to pir:T29435 hypothetical protein SC3A7.16c from Streptomyces coelicolor (1361 aa); 30.7% identity in 1024 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 863437..868497 Clostridium perfringens str. 13 988952 NP_561610.1 CDS CPE0694 NC_003366.1 868969 869982 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase 868969..869982 Clostridium perfringens str. 13 988953 NP_561611.1 CDS aroB NC_003366.1 870079 871131 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 870079..871131 Clostridium perfringens str. 13 988954 NP_561612.1 CDS aroA NC_003366.1 871378 872652 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 871378..872652 Clostridium perfringens str. 13 988955 NP_561613.2 CDS aroC NC_003366.1 872716 873789 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 872716..873789 Clostridium perfringens str. 13 988956 NP_561614.1 CDS CPE0698 NC_003366.1 873958 874251 D similar to N-terminal of sp:PHEA_AQUAE P-PROTEIN [INCLUDES: CHORISMATE MUTASE (EC 5.4.99.5) (CM) from Aquifex aeolicus (362 aa); 30.1% identity in 93 aa overlap; chorismate mutase 873958..874251 Clostridium perfringens str. 13 988957 NP_561615.1 CDS CPE0699 NC_003366.1 874579 874731 D no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 874579..874731 Clostridium perfringens str. 13 988958 NP_561616.1 CDS aroE NC_003366.1 875075 875890 D similar to gpu:AP001511_213 shikimate 5-dehydrogenase from Bacillus halodurans (278 aa); 40.6% identity in 256 aa overlap; shikimate 5-dehydrogenase 875075..875890 Clostridium perfringens str. 13 988959 NP_561617.1 CDS aroK NC_003366.1 876144 876659 D similar to sp:AROK_AQUAE SHIKIMATE KINASE (EC 2.7.1.71) (SK) from Aquifex aeolicus (168 aa); 37% identity in 154 aa overlap; shikimate kinase 876144..876659 Clostridium perfringens str. 13 988960 NP_561618.1 CDS aroQ NC_003366.1 876855 877295 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 876855..877295 Clostridium perfringens str. 13 988961 NP_561619.1 CDS CPE0703 NC_003366.1 877378 877893 D no significant homology.; hypothetical protein 877378..877893 Clostridium perfringens str. 13 988962 NP_561620.1 CDS CPE0704 NC_003366.1 878020 878352 D similar to sp:R14H_BACSH 30S RIBOSOMAL PROTEIN S14 HOMOLOG from Bacillus sphaericus (109 aa); 46.7% identity in 107 aa overlap; 30S ribosomal protein 878020..878352 Clostridium perfringens str. 13 988963 NP_561621.1 CDS CPE0705 NC_003366.1 878354 879211 D no significant homology. 6 transmembrane regions were found by PSORT.; hypothetical protein 878354..879211 Clostridium perfringens str. 13 988964 NP_561622.1 CDS CPE0706 NC_003366.1 879423 880265 D no significant homology.; hypothetical protein 879423..880265 Clostridium perfringens str. 13 988965 NP_561623.1 CDS CPE0707 NC_003366.1 880391 881281 D similar to gp:AF084104_17 NatA from Bacillus firmus (299 aa); 43.3% identity in 293 aa overlap; ATP-binding protein; ABC transporter 880391..881281 Clostridium perfringens str. 13 988966 NP_561624.1 CDS CPE0708 NC_003366.1 881283 882494 D similar to sp:YHAP_BACSU HYPOTHETICAL 45.4 KDA PROTEIN IN SSPB-PRSA INTERGENIC REGION from Bacillus subtilis (419 aa); 30.7% identity in 394 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein 881283..882494 Clostridium perfringens str. 13 988967 NP_561625.1 CDS cbh NC_003366.1 882605 883594 D similar to sp:CBH_CLOPE CHOLOYLGLYCINE HYDROLASE (EC 3.5.1.24) (CONJUGATED BILE ACID HYDROLASE) (CBAH) (BILE SALT HYDROLASE) from Clostridium perfringens (329 aa); 100% identity in 273 aa overlap; choloylglycine hydrolase 882605..883594 Clostridium perfringens str. 13 988968 NP_561626.1 CDS CPE0710 NC_003366.1 884390 884872 D similar to gpu:AP001518_182 transcriptional regulator (Lrp/AsnC family) from Bacillus halodurans (164 aa); 52.3% identity in 153 aa overlap; Lrp/AsnC family; AsnC family transcriptional regulator 884390..884872 Clostridium perfringens str. 13 988969 NP_561627.1 CDS aspC NC_003366.1 884869 886047 D similar to gpu:AP001518_181 aspartate aminotransferase from Bacillus halodurans (393 aa); 54.3% identity in 376 aa overlap; aspartate aminotransferase 884869..886047 Clostridium perfringens str. 13 988970 NP_561628.1 CDS CPE0712 NC_003366.1 886162 887187 D no significant homology.; hypothetical protein 886162..887187 Clostridium perfringens str. 13 988971 NP_561629.1 CDS CPE0713 NC_003366.1 887244 887708 R no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(887244..887708) Clostridium perfringens str. 13 988972 NP_561630.1 CDS CPE0714 NC_003366.1 887767 888909 R similar to gp:SAY14370_3 ypfP gene product from Staphylococcus aureus (391 aa); 28.3% identity in 364 aa overlap; hypothetical protein complement(887767..888909) Clostridium perfringens str. 13 988973 NP_561631.1 CDS CPE0715 NC_003366.1 889388 889903 D similar to gpu:AE004201_8 conserved hypothetical protein from Vibrio cholerae (161 aa); 34.9% identity in 83 aa overlap; GNAT family acetyltransferase 889388..889903 Clostridium perfringens str. 13 988974 NP_561632.1 CDS sigW NC_003366.1 890124 890642 D similar to gpu:AP001514_32 RNA polymerase ECF-type sigma factor from Bacillus halodurans (179 aa); 32.1% identity in 159 aa overlap; RNA polymerase ECF-type sigma factor 890124..890642 Clostridium perfringens str. 13 988975 NP_561633.1 CDS CPE0717 NC_003366.1 890718 892130 D some similarity to gpu:AP001520_227 BH4003 gene product from Bacillus halodurans (264 aa); 30.6% identity in 173 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 890718..892130 Clostridium perfringens str. 13 988976 NP_561634.1 CDS CPE0718 NC_003366.1 892351 893553 D similar to pir:A71213 truncated alanine-tRNA ligase homolog PH1969 from Pyrococcus horikoshii (404 aa); 28.2% identity in 358 aa overlap; DHHA1 domain-containing protein 892351..893553 Clostridium perfringens str. 13 988977 NP_561635.1 CDS CPE0719 NC_003366.1 893608 894612 D similar to prf:2315479K epsG gene from Lactococcus lactis (316 aa); 31.8% identity in 255 aa overlap; capsular polysaccharide biosynthesis protein 893608..894612 Clostridium perfringens str. 13 988978 NP_561636.1 CDS CPE0720 NC_003366.1 894764 895939 D similar to pir:G70007 conserved hypothetical protein yueF from Bacillus subtilis (369 aa); 25.2% identity in 349 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein 894764..895939 Clostridium perfringens str. 13 988979 NP_561637.1 CDS CPE0721 NC_003366.1 896376 897233 D similar to pir:F81444 probable integral membrane protein Cj0263 from Campylobacter jejuni (strain NCTC 11168) (291 aa); 45.6% identity in 274 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; zinc transporter ZupT 896376..897233 Clostridium perfringens str. 13 988980 NP_561638.1 CDS CPE0722 NC_003366.1 897523 898185 D similar to gpu:AP001512_140 transcriptional regulator (DeoR family) from Bacillus halodurans (251 aa); 33.6% identity in 238 aa overlap; DeoR family; DeoR family transcriptional regulator 897523..898185 Clostridium perfringens str. 13 988981 NP_561639.1 CDS CPE0723 NC_003366.1 898316 899104 D similar to sp:YBIV_ECOLI HYPOTHETICAL 30.4 KDA PROTEIN IN OMPX-MOEB INTERGENIC REGION from Escherichia coli (271 aa); 37.1% identity in 259 aa overlap; HAD hydrolase 898316..899104 Clostridium perfringens str. 13 988982 NP_561640.1 CDS splB NC_003366.1 899303 900331 D similar to sp:SPL_BACSU SPORE PHOTOPRODUCT LYASE (EC 4.1.99.-) from Bacillus subtilis (199 aa); 91.5% identity in 199 aa overlap. Also similar to pir:I40865 hypothetical protein 1 from Clostridium perfringens; spore photoproduct lyase 899303..900331 Clostridium perfringens str. 13 988983 NP_561641.1 CDS nanI NC_003366.1 900997 903081 D similar to pir:I40866 exo-alpha-sialidase (EC 3.2.1.18) from Clostridium perfringens (694 aa); 99.7% identity in 694 aa overlap. N-terminal signal sequence was found by PSORT; exo-alpha-sialidase 900997..903081 Clostridium perfringens str. 13 988984 NP_561642.1 CDS CPE0726 NC_003366.1 903129 904283 D similar to pir:I40867 hypothetical protein 2 from Clostridium perfringens (384 aa); 96.1% identity in 384 aa overlap; hypothetical protein 903129..904283 Clostridium perfringens str. 13 988985 NP_561643.1 CDS CPE0727 NC_003366.1 904693 905499 D similar to pir:I40868 hypothetical protein 3 nanH region from Clostridium perfringens (265 aa); 68.3% identity in 265 aa overlap. 3 transmembrane regions were found by PSORT.; hypothetical protein 904693..905499 Clostridium perfringens str. 13 988986 NP_561644.1 CDS CPE0728 NC_003366.1 905664 905942 D similar to pir:I40869 hypothetical protein 4 nanH region from Clostridium perfringens (190 aa); 97.6% identity in 84 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing); hypothetical protein 905664..905942 Clostridium perfringens str. 13 988987 NP_561645.1 CDS CPE0729 NC_003366.1 905890 906390 D similar to pir:I40869 hypothetical protein 4 nanH region from Clostridium perfringens (190 aa); 97.1% identity in 103 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing); hypothetical protein 905890..906390 Clostridium perfringens str. 13 988988 NP_561646.1 CDS CPE0730 NC_003366.1 906584 907048 D similar to sp:YIAC_ECOLI HYPOTHETICAL 17.1 KDA PROTEIN IN TAG-BISC INTERGENIC REGION. from Escherichia coli (146 aa); 36% identity in 139 aa overlap; hypothetical protein 906584..907048 Clostridium perfringens str. 13 988989 NP_561647.1 CDS CPE0731 NC_003366.1 907404 907580 D no significant homology.; hypothetical protein 907404..907580 Clostridium perfringens str. 13 988990 NP_561648.1 CDS CPE0732 NC_003366.1 907833 908408 D similar to pir:H69339 conserved hypothetical protein AF0720 from Archaeoglobus fulgidus (214 aa); 38.5% identity in 213 aa overlap; hypothetical protein 907833..908408 Clostridium perfringens str. 13 988991 NP_561649.1 CDS CPE0733 NC_003366.1 908623 909519 R similar to sp:YC30_ODOSI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR YCF30 from Odontella sinensis chloroplast (309 aa); 29% identity in 262 aa overlap; LysR family; LysR family transcriptional regulator complement(908623..909519) Clostridium perfringens str. 13 988992 NP_561650.1 CDS naoX NC_003366.1 909869 911569 D similar to gpu:AE004394_5 NADH oxidase, from Vibrio cholerae (567 aa); 43% identity in 530 aa overlap. N-terminal signal sequence was found by PSORT; pyridine nucleotide-disulfide oxidoreductase 909869..911569 Clostridium perfringens str. 13 988993 NP_561651.1 CDS CPE0735 NC_003366.1 911675 912961 D partially similar to pir:D82968 hypothetical protein PA5430 from Pseudomonas aeruginosa (strain PAO1) (404 aa); 25.5% identity in 314 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; hypothetical protein 911675..912961 Clostridium perfringens str. 13 988994 NP_561652.1 CDS CPE0736 NC_003366.1 913050 914381 D similar to gpu:AP001510_169 BH0994 gene product from Bacillus halodurans (395 aa); 24.9% identity in 369 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; amino acid ABC transporter permease 913050..914381 Clostridium perfringens str. 13 988995 NP_561653.1 CDS CPE0737 NC_003366.1 914540 915202 R similar to >gp:LMO132543_1 fibronectin-binding protein, 25kDA from Listeria monocytogenes (215 aa); 30.6% identity in 219 aa overlap; fibronectin-binding protein complement(914540..915202) Clostridium perfringens str. 13 988996 NP_561654.1 CDS CPE0738 NC_003366.1 915477 915755 R similar to pir:D69971 conserved hypothetical protein yraL from Bacillus subtilis (87 aa); 47.4% identity in 76 aa overlap; hypothetical protein complement(915477..915755) Clostridium perfringens str. 13 988997 NP_561655.1 CDS CPE0739 NC_003366.1 916103 916420 D similar to pir:B37192 thioredoxin from Bacillus subtilis (104 aa); 56.8% identity in 81 aa overlap; thioredoxin 916103..916420 Clostridium perfringens str. 13 988998 NP_561656.1 CDS CPE0740 NC_003366.1 916727 917059 D similar to gpu:AP001509_175 cinnamoyl ester hydrolase from Bacillus halodurans (118 aa); 37% identity in 92 aa overlap; hypothetical protein 916727..917059 Clostridium perfringens str. 13 988999 NP_561657.1 CDS CPE0741 NC_003366.1 917086 918297 D similar to sp:YE54_HAEIN HYPOTHETICAL CYTOCHROME C-TYPE BIOGENESIS PROTEIN HI1454 from Haemophilus influenzae (213 aa); 39.9% identity in 193 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; cytochrome C-type biogenesis protein 917086..918297 Clostridium perfringens str. 13 989000 NP_561658.1 CDS lipB NC_003366.1 918827 920548 D C-terminal region is similar to pir:C69464 carboxylesterase (estA) homolog from Archaeoglobus fulgidus (311 aa); 35.9% identity in 248 aa overlap; lipase 918827..920548 Clostridium perfringens str. 13 989001 NP_561659.1 CDS cstA NC_003366.1 921005 922456 D similar to gpu:AE004154_11 carbon starvation protein A, from Vibrio cholerae (494 aa); 48.1% identity in 437 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; carbon starvation protein CstA 921005..922456 Clostridium perfringens str. 13 989002 NP_561660.1 CDS CPE0744 NC_003366.1 922600 922902 D no significant homology.; hypothetical protein 922600..922902 Clostridium perfringens str. 13 989003 NP_561661.1 CDS CPE0745 NC_003366.1 922990 923544 R similar to gpu:AP001509_157 transcriptional regulator (TetR/AcrR family) from Bacillus halodurans (188 aa); 30% identity in 170 aa overlap; TetR/AcrR family; hypothetical protein complement(922990..923544) Clostridium perfringens str. 13 989004 NP_561662.1 CDS CPE0746 NC_003366.1 923942 924643 D similar to pir:B69477 ABC transporter, ATP-binding protein homolog from Archaeoglobus fulgidus (231 aa); 51.3% identity in 226 aa overlap; ATP-binding protein; ABC transporter ATP-binding protein 923942..924643 Clostridium perfringens str. 13 989005 NP_561663.1 CDS CPE0747 NC_003366.1 924660 928058 D C-terminal region is similar to pir:C69477 hypothetical protein AF1820 from Archaeoglobus fulgidus (791 aa); 23.4% identity in 538 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; hypothetical protein 924660..928058 Clostridium perfringens str. 13 989006 NP_561664.1 CDS CPE0748 NC_003366.1 928284 928649 D no significant homology.; hypothetical protein 928284..928649 Clostridium perfringens str. 13 989007 NP_561665.1 CDS CPE0749 NC_003366.1 928856 929869 D partially similar to pir:B75136 hypothetical protein PAB1767 from Pyrococcus abyssi (strain Orsay) (601 aa); 23.1% identity in 329 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 928856..929869 Clostridium perfringens str. 13 989008 NP_561666.1 CDS CPE0750 NC_003366.1 929956 930366 D similar to gp:AF158628_1 hypothetical protein from Prochlorococcus PCC9511 (146 aa); 31.4% identity in 105 aa overlap; hypothetical protein 929956..930366 Clostridium perfringens str. 13 989009 NP_561667.1 CDS CPE0751 NC_003366.1 930503 930673 D no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 930503..930673 Clostridium perfringens str. 13 989010 NP_561668.1 CDS CPE0752 NC_003366.1 930915 931253 D no significant homology.; hypothetical protein 930915..931253 Clostridium perfringens str. 13 989011 NP_561669.1 CDS CPE0753 NC_003366.1 931305 932249 D no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 931305..932249 Clostridium perfringens str. 13 989012 NP_561670.1 CDS clsC NC_003366.1 932386 933843 R similar to sp:CLS2_BACSU PROBABLE CARDIOLIPIN SYNTHETASE 2 (EC 2.7.8.-) (CARDIOLIPIN SYNTHASE 2) (CL SYNTHASE 2) from Bacillus subtilis (482 aa); 42.8% identity in 484 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; cardiolipin synthetase complement(932386..933843) Clostridium perfringens str. 13 989013 NP_561671.1 CDS CPE0755 NC_003366.1 934078 934572 D similar to C-terminal of gp:AF083252_3 unknown from Pseudomonas aeruginosa (278 aa); 26.8% identity in 153 aa overlap; hypothetical protein 934078..934572 Clostridium perfringens str. 13 989014 NP_561672.1 CDS CPE0756 NC_003366.1 934665 935927 R similar to pir:S22662 cytosine deaminase (EC 3.5.4.1) from Escherichia coli (427 aa); 51.2% identity in 402 aa overlap; cytosine deaminase complement(934665..935927) Clostridium perfringens str. 13 989015 NP_561673.1 CDS CPE0757 NC_003366.1 936375 937130 D similar to pir:T44251 creatinase (EC 3.5.3.3) from Arthrobacter sp. (strain TE1826) (258 aa); 56.6% identity in 244 aa overlap; creatinase 936375..937130 Clostridium perfringens str. 13 989016 NP_561674.1 CDS CPE0758 NC_003366.1 937179 938105 D similar to pir:D71226 hypothetical protein PH0070 from Pyrococcus horikoshii (275 aa); 22.1% identity in 290 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; hypothetical protein 937179..938105 Clostridium perfringens str. 13 989017 NP_561675.1 CDS CPE0759 NC_003366.1 938231 939430 R partially similar to gpu:AP001513_267 BH1994 gene product from Bacillus halodurans (735 aa); 25.4% identity in 268 aa overlap; hypothetical protein complement(938231..939430) Clostridium perfringens str. 13 989018 NP_561676.1 CDS def NC_003366.1 939619 940029 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 939619..940029 Clostridium perfringens str. 13 989019 NP_561677.1 CDS gltT NC_003366.1 940362 941627 R similar to sp:GLTT_BACST PROTON/SODIUM-GLUTAMATE SYMPORT PROTEIN (GLUTAMATE-ASPARTATE CARRIER PROTEIN) from Bacillus stearothermophilus (421 aa); 62.9% identity in 421 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; proton/sodium- glutamate symport protein complement(940362..941627) Clostridium perfringens str. 13 989020 NP_561678.1 CDS CPE0762 NC_003366.1 942203 942895 R similar to gpu:AE004391_5 conserved hypothetical protein from Vibrio cholerae (224 aa); 43% identity in 228 aa overlap; HAD-superfamily hydrolase complement(942203..942895) Clostridium perfringens str. 13 989021 NP_561679.1 CDS CPE0763 NC_003366.1 943121 944074 D no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 943121..944074 Clostridium perfringens str. 13 989022 NP_561680.1 CDS CPE0764 NC_003366.1 944309 944938 R no significant homology.; hypothetical protein complement(944309..944938) Clostridium perfringens str. 13 989023 NP_561681.1 CDS CPE0765 NC_003366.1 945090 945893 D similar to gpu:AP001519_11 transcriptional regulator of multidrug-efflux transporter genes from Bacillus halodurans (271 aa); 26.7% identity in 255 aa overlap; MerR family; transcriptional regulator 945090..945893 Clostridium perfringens str. 13 989024 NP_561682.1 CDS CPE0766 NC_003366.1 946053 947447 R no significant homology.; hypothetical protein complement(946053..947447) Clostridium perfringens str. 13 989025 NP_561683.1 CDS CPE0767 NC_003366.1 947568 948767 R similar to gp:CPIS1136_1 C.perfringens IS1136 DNA from Clostridium perfringens (122 aa); 68% identity in 125 aa overlap; IS1136 transposase complement(947568..948767) Clostridium perfringens str. 13 989026 NP_561684.1 CDS CPE0768 NC_003366.1 949320 949475 D no significant homology.; hypothetical protein 949320..949475 Clostridium perfringens str. 13 989027 NP_561685.1 CDS gutA NC_003366.1 949815 951179 D similar to sp:GUTA_BACSU PROBABLE GLUCITOL TRANSPORT PROTEIN GUTA from Bacillus subtilis (463 aa); 30% identity in 237 aa overlap. 12 transmembrane regions were found by PSORT.; sugar transport protein 949815..951179 Clostridium perfringens str. 13 989028 NP_561686.1 CDS CPE0770 NC_003366.1 951402 952241 R similar to sp:LACR_STAXY LACTOSE OPERON TRANSCRIPTION ACTIVATOR from Staphylococcus xylosus (279 aa); 44.5% identity in 272 aa overlap; AraC/XylS family; transcriptional regulator complement(951402..952241) Clostridium perfringens str. 13 989029 NP_561687.1 CDS bgaL NC_003366.1 952605 955634 D similar to sp:BGAL_STAXY BETA-GALACTOSIDASE (EC 3.2.1.23) (LACTASE) from Staphylococcus xylosus (994 aa); 44.9% identity in 1004 aa overlap; beta-galactosidase 952605..955634 Clostridium perfringens str. 13 989030 NP_561688.1 CDS CPE0772 NC_003366.1 955777 957018 R similar to gpu:AP001520_121 BH3897 gene product from Bacillus halodurans (427 aa); 43.7% identity in 435 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein complement(955777..957018) Clostridium perfringens str. 13 989031 NP_561689.1 CDS CPE0773 NC_003366.1 957162 957314 R no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein complement(957162..957314) Clostridium perfringens str. 13 989032 NP_561690.1 CDS CPE0774 NC_003366.1 957776 958522 D similar to N-terminal of pir:B69271 hypothetical protein AF0170 from Archaeoglobus fulgidus (434 aa); 28.7% identity in 251 aa overlap. S.D. unclear; hypothetical protein 957776..958522 Clostridium perfringens str. 13 989033 NP_561691.1 CDS CPE0775 NC_003366.1 958700 959398 D similar to gpu:REU278372_1 NorA2 protein from Ralstonia eutropha (235 aa); 27.4% identity in 223 aa overlap; hypothetical protein 958700..959398 Clostridium perfringens str. 13 989034 NP_561692.1 CDS CPE0776 NC_003366.1 959551 960252 D similar to pir:C75282 transcription regulator from Deinococcus radiodurans (strain R1) (231 aa); 30% identity in 200 aa overlap; Crp/Fnr family; transcriptional regulator 959551..960252 Clostridium perfringens str. 13 989035 NP_561693.1 CDS rubR1 NC_003366.1 960510 960671 R similar to sp:RUBR_CLOPE RUBREDOXIN (RD) from Clostridium perfringens (54 aa); 77.4% identity in 53 aa overlap; rubredoxin complement(960510..960671) Clostridium perfringens str. 13 989036 NP_561694.1 CDS CPE0778 NC_003366.1 961274 962020 D similar to C-terminal of gpu:AP001510_233 flavohemoglobin from Bacillus halodurans (411 aa); 37.9% identity in 240 aa overlap. 1 transmembrane region was found by PSORT; flavohemoprotein 961274..962020 Clostridium perfringens str. 13 989037 NP_561695.1 CDS CPE0779 NC_003366.1 962239 962949 D similar to gpu:AP001507_231 transcriptional regulator of anaerobic genes from Bacillus halodurans (237 aa); 28.8% identity in 215 aa overlap; Crp/Fnr family; transcriptional regulator 962239..962949 Clostridium perfringens str. 13 989038 NP_561696.1 CDS rubR2 NC_003366.1 963004 963165 R similar to sp:RUBR_CLOPE RUBREDOXIN (RD) from Clostridium perfringens (54 aa); 100% identity in 53 aa overlap; rubredoxin complement(963004..963165) Clostridium perfringens str. 13 989039 NP_561697.1 CDS CPE0781 NC_003366.1 963192 964412 R similar to C-terminal of sp:Y732_METJA HYPOTHETICAL PROTEIN MJ0732 from Methanococcus jannaschii (393 aa); 33.7% identity in 243 aa overlap; metallo-beta-lactamase complement(963192..964412) Clostridium perfringens str. 13 989040 NP_561698.1 CDS CPE0782 NC_003366.1 964622 965191 D similar to prf:2406356A alkyl hydrogen peroxide reductase from Enterococcus faecalis (187 aa); 65.8% identity in 187 aa overlap; alkyl hydroperoxide reductase 964622..965191 Clostridium perfringens str. 13 989041 NP_561699.1 CDS CPE0783 NC_003366.1 965438 967108 D similar to pir:D35156 thioredoxin reductase (NADPH) (EC 1.6.4.5) from Eubacterium acidaminophilum (315 aa); 50.8% identity in 309 aa overlap. 2 transmembrane regions were found by PSORT.; thioredoxin reductase 965438..967108 Clostridium perfringens str. 13 989042 NP_561700.1 CDS vgaB NC_003366.1 967229 968935 R similar to gp:SAU82085_1 pristinamycin resistance protein VgaB from Staphylococcus aureus (552 aa); 34.5% identity in 522 aa overlap; ATP-binding protein; ABC transporter complement(967229..968935) Clostridium perfringens str. 13 989043 NP_561701.1 CDS pfoS/R NC_003366.1 969653 970711 D similar to pir:E71373 probable regulatory protein (pfoS/R) from Treponema pallidum (350 aa); 32% identity in 338 aa overlap. 10 transmembrane regions were found by PSORT.; regulatory protein 969653..970711 Clostridium perfringens str. 13 989044 NP_561702.1 CDS apbA NC_003366.1 970747 971673 D ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 970747..971673 Clostridium perfringens str. 13 989045 NP_561703.1 CDS CPE0787 NC_003366.1 971936 972361 D similar to pir:C70065 transcription regulator MarR family homolog ywoH from Bacillus subtilis (137 aa); 30.7% identity in 101 aa overlap; MarR family; MarR family transcriptional regulator 971936..972361 Clostridium perfringens str. 13 989046 NP_561704.1 CDS CPE0788 NC_003366.1 972580 973083 D no significant homology.; hypothetical protein 972580..973083 Clostridium perfringens str. 13 989047 NP_561705.1 CDS CPE0789 NC_003366.1 973186 973629 D similar to pir:A69860 transcription regulator MarR family homolog ykoM from Bacillus subtilis (154 aa); 35.6% identity in 135 aa overlap. S.D. unclear; MarR family; transcriptional regulator 973186..973629 Clostridium perfringens str. 13 989048 NP_561706.1 CDS CPE0790 NC_003366.1 973712 974593 D similar to gp:AF154003_1 pirin from Lycopersicon esculentum (291 aa); 36% identity in 272 aa overlap; pirin 973712..974593 Clostridium perfringens str. 13 989049 NP_561707.1 CDS CPE0791 NC_003366.1 974627 975223 D similar to gpu:AP001520_267 NAD(P)H dehydrogenase (quinone) from Bacillus halodurans (211 aa); 46% identity in 198 aa overlap; NAD(P)H dehydrogenase 974627..975223 Clostridium perfringens str. 13 989050 NP_561708.1 CDS CPE0792 NC_003366.1 975399 976349 R similar to pir:C69805 iron(III) dicitrate transport permease homolog yfiY from Bacillus subtilis (325 aa); 48.4% identity in 279 aa overlap. N-terminal signal sequence was found by PSORT; binding protein; iron(III) dicitrate ABC transporter complement(975399..976349) Clostridium perfringens str. 13 989051 NP_561709.1 CDS CPE0793 NC_003366.1 976479 977483 D similar to pir:D69805 iron(III) dicitrate transport permease homolog yfiZ from Bacillus subtilis (333 aa); 35% identity in 306 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; permease; iron(III) dicitrate ABC transporter 976479..977483 Clostridium perfringens str. 13 989052 NP_561710.1 CDS CPE0794 NC_003366.1 977483 978505 D similar to pir:B69800 iron(III) dicitrate transport permease homolog yfhA from Bacillus subtilis (343 aa); 38% identity in 308 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; permease; iron(III) dicitrate ABC transporter 977483..978505 Clostridium perfringens str. 13 989053 NP_561711.1 CDS CPE0795 NC_003366.1 978511 979281 D similar to pir:G70022 iron(III) dicitrate transport permease homolog yusV from Bacillus subtilis (275 aa); 50.6% identity in 257 aa overlap; ATP-binding protein; iron(III) dicitrate ABC transporter 978511..979281 Clostridium perfringens str. 13 989054 NP_561712.1 CDS CPE0796 NC_003366.1 979635 980150 D similar to gpu:AE004390_1 MutT/nudix family protein from Vibrio cholerae (186 aa); 32.5% identity in 154 aa overlap; MutT/nudix family protein 979635..980150 Clostridium perfringens str. 13 989055 NP_561713.1 CDS CPE0797 NC_003366.1 980300 980881 R similar to sp:YWOA_BACSU HYPOTHETICAL 21.7 KDA PROTEIN IN NRGB-SPOIIQ INTERGENIC REGION from Bacillus subtilis (193 aa); 32.6% identity in 193 aa overlap. 4 transmembrane regions were found by PSORT.; PAP2 family protein complement(980300..980881) Clostridium perfringens str. 13 989056 NP_561714.1 CDS CPE0798 NC_003366.1 981105 981845 D similar to sp:YOXB_BACSU HYPOTHETICAL 28.5 KDA PROTEIN IN RTP-PELB INTERGENIC REGION (ORF119+) from Bacillus subtilis (256 aa); 40.6% identity in 244 aa overlap; hypothetical protein 981105..981845 Clostridium perfringens str. 13 989057 NP_561715.1 CDS CPE0799 NC_003366.1 982027 983271 D similar to N-terminal of sp:FLIB_SALTY LYSINE-N-METHYLASE (EC 2.1.1.-) (LYSINE N-METHYLTRANSFERASE) from Salmonella typhimurium (401 aa); 28.9% identity in 204 aa overlap; hypothetical protein 982027..983271 Clostridium perfringens str. 13 989058 NP_561716.1 CDS CPE0800 NC_003366.1 983406 983933 R no significant homology.; hypothetical protein complement(983406..983933) Clostridium perfringens str. 13 989059 NP_561717.1 CDS CPE0801 NC_003366.1 984452 984919 D no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 984452..984919 Clostridium perfringens str. 13 989060 NP_561718.1 CDS CPE0802 NC_003366.1 985047 985406 D no significant homology.; hypothetical protein 985047..985406 Clostridium perfringens str. 13 989061 NP_561719.1 CDS CPE0803 NC_003366.1 985384 985761 D partially similar to pir:A75268 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (241 aa); 31.5% identity in 111 aa overlap; hypothetical protein 985384..985761 Clostridium perfringens str. 13 989062 NP_561720.1 CDS CPE0804 NC_003366.1 985945 987819 D catalyzes the formation of L-histidinol from L-histidinol phosphate; sensory box protein/histidinol phosphate phosphatase 985945..987819 Clostridium perfringens str. 13 989063 NP_561721.1 CDS CPE0805 NC_003366.1 988114 989946 D similar to pir:S63617 cymH protein from Klebsiella oxytoca (598 aa); 54.7% identity in 563 aa overlap; cyclomaltodextrinase 988114..989946 Clostridium perfringens str. 13 989064 NP_561722.1 CDS CPE0806 NC_003366.1 990191 991474 D similar to sp:YA25_METJA HYPOTHETICAL PROTEIN MJ1025 from Methanococcus jannaschii (388 aa); 27.1% identity in 421 aa overlap; hypothetical protein 990191..991474 Clostridium perfringens str. 13 989065 NP_561723.1 CDS CPE0807 NC_003366.1 991753 992256 R no significant homology. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein complement(991753..992256) Clostridium perfringens str. 13 989066 NP_561724.1 CDS CPE0808 NC_003366.1 992576 993121 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 992576..993121 Clostridium perfringens str. 13 989067 NP_561725.1 CDS CPE0809 NC_003366.1 993161 993781 R partially similar to prf:2316406C membrane protein from Staphylococcus gallinarum (330 aa); 38.4% identity in 151 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(993161..993781) Clostridium perfringens str. 13 989068 NP_561726.1 CDS fhuD NC_003366.1 994044 994988 D similar to pir:C69805 iron(III) dicitrate transport permease homolog yfiY from Bacillus subtilis (325 aa); 31.9% identity in 273 aa overlap; iron(III) dicitrate ABC transporter 994044..994988 Clostridium perfringens str. 13 989069 NP_561727.1 CDS fhuB NC_003366.1 995087 996100 D similar to gpu:AP001510_258 ferrichrome ABC transporter (permease) from Bacillus halodurans (338 aa); 40.7% identity in 302 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; ferrichrome ABC transporter 995087..996100 Clostridium perfringens str. 13 989070 NP_561728.1 CDS fhuG NC_003366.1 996104 997117 D similar to sp:FHUG_BACSU FERRICHROME TRANSPORT SYSTEM PERMEase FHUG from Bacillus subtilis (336 aa); 49.2% identity in 179 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; ferrichrome ABC transporter 996104..997117 Clostridium perfringens str. 13 989071 NP_561729.1 CDS fhuC NC_003366.1 997182 997964 D similar to sp:FHUC_BACSU FERRICHROME TRANSPORT ATP-BINDING PROTEIN FHUC from Bacillus subtilis (269 aa); 55.4% identity in 260 aa overlap; ATP-binding protein; ferrichrome ABC transporter 997182..997964 Clostridium perfringens str. 13 989072 NP_561730.1 CDS CPE0814 NC_003366.1 998264 998752 D similar to sp:YHHY_ECOLI HYPOTHETICAL 18.8 KDA PROTEIN IN GNTR-GGT INTERGENIC REGION from Escherichia coli (162 aa); 37.2% identity in 156 aa overlap; GNAT family acetyltransferase 998264..998752 Clostridium perfringens str. 13 989073 NP_561731.1 CDS CPE0815 NC_003366.1 998829 999044 D no significant homology.; hypothetical protein 998829..999044 Clostridium perfringens str. 13 989074 NP_561732.1 CDS CPE0816 NC_003366.1 999037 999354 D no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 999037..999354 Clostridium perfringens str. 13 989075 NP_561733.1 CDS CPE0817 NC_003366.1 999566 999892 R no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(999566..999892) Clostridium perfringens str. 13 989076 NP_561734.1 CDS CPE0818 NC_003366.1 1000306 1003689 D similar to gpu:AP001509_223 endo-beta-N-acetylglucosaminidase from Bacillus halodurans (878 aa); 42.5% identity in 656 aa overlap. N-terminal signal sequence was found by PSORT; endo-beta-N-acetylglucosaminidase 1000306..1003689 Clostridium perfringens str. 13 989077 NP_561735.1 CDS ddl NC_003366.1 1003890 1004798 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 1003890..1004798 Clostridium perfringens str. 13 989078 NP_561736.1 CDS CPE0820 NC_003366.1 1004945 1005772 D similar to >sp:Y265_MYCGE HYPOTHETICAL PROTEIN MG265 from Mycoplasma genitalium (278 aa); 27.5% identity in 273 aa overlap; hypothetical protein 1004945..1005772 Clostridium perfringens str. 13 989079 NP_561737.1 CDS CPE0821 NC_003366.1 1006099 1007079 D similar to gp:AF130465_1 mannose-specific phosphotransferase system component IIAB from Streptococcus salivarius (330 aa); 56.2% identity in 317 aa overlap; mannnose-specific IIAB component; PTS system transporter 1006099..1007079 Clostridium perfringens str. 13 989080 NP_561738.1 CDS CPE0822 NC_003366.1 1007130 1007933 D similar to gp:AF130465_2 mannose-specific phosphotransferase system component IIC [Streptococcus salivarius] from Streptococcus salivarius (271 aa); 42.1% identity in 126 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; mannnose-specific IIC component; PTS system mannose/fructose/sorbose family transporter subunit IIC 1007130..1007933 Clostridium perfringens str. 13 989081 NP_561739.1 CDS CPE0823 NC_003366.1 1007953 1008444 D similar to gp:AF130465_3 mannose-specific phosphotransferase system component IID [Streptococcus salivarius] from Streptococcus salivarius (303 aa); 73.2% identity in 123 aa overlap. Probably truncated by frameshift mutation; mannnose-specific IID component; PTS system transporter 1007953..1008444 Clostridium perfringens str. 13 989082 NP_561740.1 CDS CPE0824 NC_003366.1 1008407 1008865 D similar to gp:AF130465_3 mannose-specific phosphotransferase system component IID [Streptococcus salivarius] from Streptococcus salivarius (303 aa); 62.3% identity in 167 aa overlap. Probably truncated by frameshift mutation. 3 transmembrane regions were found by PSORT.; mannnose-specific IID component; PTS system transporter 1008407..1008865 Clostridium perfringens str. 13 989083 NP_561741.1 CDS CPE0825 NC_003366.1 1009036 1009410 D similar to gp:AF130465_4 unknown from Streptococcus salivarius (124 aa); 32.3% identity in 124 aa overlap; hypothetical protein 1009036..1009410 Clostridium perfringens str. 13 989084 NP_561742.1 CDS CPE0826 NC_003366.1 1009782 1010033 D no significant homology.; hypothetical protein 1009782..1010033 Clostridium perfringens str. 13 989085 NP_561743.1 CDS CPE0827 NC_003366.1 1010354 1011271 D similar to gpu:AP001520_126 endo-1,4-beta-xylanase from Bacillus halodurans (319 aa); 27.2% identity in 276 aa overlap. N-terminal signal sequence was found by PSORT; polysaccharide deacetylase 1010354..1011271 Clostridium perfringens str. 13 989086 NP_561744.1 CDS CPE0828 NC_003366.1 1011728 1012510 D similar to gp:AF068901_6 unknown from Streptococcus pneumoniae (234 aa); 27.4% identity in 186 aa overlap. 7 transmembrane regions were found by PSORT.; hypothetical protein 1011728..1012510 Clostridium perfringens str. 13 989087 NP_561745.1 CDS CPE0829 NC_003366.1 1012767 1013708 D no significant homology. S.D. unclear.; hypothetical protein 1012767..1013708 Clostridium perfringens str. 13 989088 NP_561746.1 CDS CPE0830 NC_003366.1 1013773 1015128 R similar to gpu:AP001514_169 BH2163 gene product from Bacillus halodurans (464 aa); 34.8% identity in 428 aa overlap. 9 transmembrane regions were found by PSORT.; hypothetical protein complement(1013773..1015128) Clostridium perfringens str. 13 989089 NP_561747.1 CDS bgaL NC_003366.1 1015357 1017771 D similar to sp:BGAL_THETU BETA-GALACTOSIDASE (EC 3.2.1.23) (LACTASE) from Thermoanaerobacterium thermosulfurigenes (716 aa); 56.3% identity in 611 aa overlap; beta-galactosidase 1015357..1017771 Clostridium perfringens str. 13 989090 NP_561748.1 CDS CPE0832 NC_003366.1 1018565 1019518 D similar to pir:C69870 conserved hypothetical protein ykwD from Bacillus subtilis (257 aa); 28.7% identity in 230 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1018565..1019518 Clostridium perfringens str. 13 989091 NP_561749.1 CDS CPE0833 NC_003366.1 1020041 1021861 D similar to prf:1807237B subtilin transport protein from Bacillus subtilis (599 aa); 28.6% identity in 559 aa overlap. 4 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 1020041..1021861 Clostridium perfringens str. 13 989092 NP_561750.1 CDS CPE0834 NC_003366.1 1021861 1023651 D similar to sp:SPAT_BACSU SUBTILIN TRANSPORT ATP-BINDING PROTEIN SPAT from Bacillus subtilis (614 aa); 29.6% identity in 578 aa overlap. 3 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 1021861..1023651 Clostridium perfringens str. 13 989093 NP_561751.1 CDS CPE0835 NC_003366.1 1023868 1024365 D similar to pir:E69772 hypothetical protein ydbS from Bacillus subtilis (159 aa); 36.4% identity in 99 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1023868..1024365 Clostridium perfringens str. 13 989094 NP_561752.1 CDS CPE0836 NC_003366.1 1024374 1026002 D similar to pir:F69772 hypothetical protein ydbT from Bacillus subtilis (493 aa); 19.1% identity in 325 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein 1024374..1026002 Clostridium perfringens str. 13 989095 NP_561753.1 CDS CPE0837 NC_003366.1 1026369 1026653 D similar to sp:ARSR_STAAU ARSENICAL RESISTANCE OPERON REPRESSOR from Staphylococcus aureus plasmid pI258 (104 aa); 55.2% identity in 67 aa overlap; ArsR family; transcriptional regulator 1026369..1026653 Clostridium perfringens str. 13 989096 NP_561754.1 CDS CPE0838 NC_003366.1 1026771 1027169 D similar to pir:B70360 arsenate reductase from Aquifex aeolicus (144 aa); 45.6% identity in 125 aa overlap; arsenate reductase 1026771..1027169 Clostridium perfringens str. 13 989097 NP_561755.1 CDS CPE0839 NC_003366.1 1027186 1028502 D similar to pir:H70158 conserved hypothetical integral membrane protein BB0473 from Borrelia burgdorferi (454 aa); 26.8% identity in 414 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein 1027186..1028502 Clostridium perfringens str. 13 989098 NP_561756.1 CDS CPE0840 NC_003366.1 1028688 1029356 D similar to gp:SPAJ6391_1 response regulator from Streptococcus pneumoniae (225 aa); 48.2% identity in 220 aa overlap; two-component response regulator 1028688..1029356 Clostridium perfringens str. 13 989099 NP_561757.1 CDS CPE0841 NC_003366.1 1029353 1030363 D similar to gp:AF036964_2 histidine kinase from Lactobacillus sakei (339 aa); 32.1% identity in 280 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; two-component sensor histidine kinase 1029353..1030363 Clostridium perfringens str. 13 989100 NP_561758.1 CDS CPE0842 NC_003366.1 1030647 1030814 D no significant homology.; hypothetical protein 1030647..1030814 Clostridium perfringens str. 13 989101 NP_561759.1 CDS CPE0843 NC_003366.1 1030943 1031356 D similar to gp:AF275307_2 unknown from Helicobacter pylori (234 aa); 39% identity in 100 aa overlap; hypothetical protein 1030943..1031356 Clostridium perfringens str. 13 989102 NP_561760.1 CDS CPE0844 NC_003366.1 1031615 1031773 R no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein complement(1031615..1031773) Clostridium perfringens str. 13 989103 NP_561761.1 CDS CPE0845 NC_003366.1 1031779 1032390 R no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein complement(1031779..1032390) Clostridium perfringens str. 13 989104 NP_561762.1 CDS CPE0846 NC_003366.1 1032778 1034352 D similar to sp:CLOS_CLOHI ALPHA-CLOSTRIPAIN PRECURSOR (EC 3.4.22.8) (CLOSTRIDIOPEPTIDASE B) from Clostridium histolyticum (526 aa); 58.3% identity in 533 aa overlap. N-terminal signal sequence was found by PSORT; alpha-clostripain 1032778..1034352 Clostridium perfringens str. 13 989105 NP_561763.1 CDS CPE0847 NC_003366.1 1035447 1036241 D no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1035447..1036241 Clostridium perfringens str. 13 989106 NP_561764.1 CDS CPE0848 NC_003366.1 1036701 1037438 D no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1036701..1037438 Clostridium perfringens str. 13 989108 NP_561765.1 CDS CPE0849 NC_003366.1 1037849 1038499 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1037849..1038499 Clostridium perfringens str. 13 989109 NP_561766.1 CDS CPE0850 NC_003366.1 1039372 1040139 D similar to gp:AP001520_137 ABC transporter (ATP-binding protein) from Bacillus halodurans (253 aa); 54.4% identity in 250 aa overlap; ATP-binding protein; ABC transporter 1039372..1040139 Clostridium perfringens str. 13 989110 NP_561767.1 CDS CPE0851 NC_003366.1 1040120 1042174 D similar to pir:B70001 ABC transporter (permease) homolog ytsD from Bacillus subtilis (646 aa); 23.6% identity in 665 aa overlap. 10 transmembrane regions were found by PSORT.; permease; ABC transporter 1040120..1042174 Clostridium perfringens str. 13 989111 NP_561768.1 CDS CPE0852 NC_003366.1 1042539 1043960 D similar to gb|AAF56462.1| (AE003751) CG11909 gene product from Drosophila melanogaster (657 aa); 31% identity in 432 aa overlap; hypothetical protein 1042539..1043960 Clostridium perfringens str. 13 989112 NP_561769.1 CDS CPE0853 NC_003366.1 1044211 1044513 R no significant homology.; hypothetical protein complement(1044211..1044513) Clostridium perfringens str. 13 989113 NP_561770.1 CDS aspC NC_003366.1 1044777 1045919 D similar to gp:CPASPC_1 aspC gene product from Clostridium perfringens (160 aa); 96.9% identity in 159 aa overlap; class V aminotransferase 1044777..1045919 Clostridium perfringens str. 13 989114 NP_561771.1 CDS rubY NC_003366.1 1046108 1046647 D similar to gp:AF202316_3 rubrerythrin from Moorella thermoacetica (191 aa); 55.4% identity in 184 aa overlap; rubrerythrin 1046108..1046647 Clostridium perfringens str. 13 989115 NP_561772.1 CDS CPE0856 NC_003366.1 1047164 1050232 D similar to gp:AP001509_229 alpha-mannosidase from Bacillus halodurans (1039 aa); 32.8% identity in 1081 aa overlap; alpha-mannosidase 1047164..1050232 Clostridium perfringens str. 13 989116 NP_561773.1 CDS CPE0857 NC_003366.1 1050489 1051046 R similar to gp:AP001510_12 BH0837 gene product from Bacillus halodurans (197 aa); 31.6% identity in 177 aa overlap; hypothetical protein complement(1050489..1051046) Clostridium perfringens str. 13 989117 NP_561774.1 CDS bdhA NC_003366.1 1051286 1052458 D similar to sp:ADHA_BACSU PROBABLE NADH-DEPENDENT BUTANOL DEHYDROGENASE 1 (EC 1.1.1.-) from Bacillus subtilis (387 aa); 48.2% identity in 390 aa overlap; NADH-dependent butanol dehydrogenase 1051286..1052458 Clostridium perfringens str. 13 989118 NP_561775.1 CDS CPE0859 NC_003366.1 1052896 1053834 D similar to gp:AP001516_160 BH2731 gene product from Bacillus halodurans (371 aa); 25.3% identity in 316 aa overlap; carbohydrate diacid regulator 1052896..1053834 Clostridium perfringens str. 13 989119 NP_561776.1 CDS CPE0860 NC_003366.1 1053981 1055240 D similar to sp:Y092_HAEIN HYPOTHETICAL PROTEIN HI0092 from Haemophilus influenzae (strain Rd KW20) (419 aa); 60.8% identity in 395 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; gluconate permease 1053981..1055240 Clostridium perfringens str. 13 989120 NP_561777.1 CDS CPE0861 NC_003366.1 1055464 1056585 D similar to sp:YHAD_HAEIN HYPOTHETICAL PROTEIN HI0091 from Haemophilus influenzae (strain Rd KW20) (378 aa); 51.2% identity in 373 aa overlap; hypothetical protein 1055464..1056585 Clostridium perfringens str. 13 989121 NP_561778.1 CDS deaD NC_003366.1 1056913 1058349 D similar to sp:DEAD_BACSU PROBABLE ATP-DEPENDENT RNA HELICASE DEAD from Bacillus subtilis (479 aa); 49.2% identity in 476 aa overlap; ATP-dependent RNA helicase DeaD 1056913..1058349 Clostridium perfringens str. 13 989122 NP_561779.1 CDS CPE0863 NC_003366.1 1058504 1058962 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1058504..1058962 Clostridium perfringens str. 13 989123 NP_561780.1 CDS CPE0864 NC_003366.1 1059103 1060527 D similar to gpu:AE004241_1 conserved hypothetical protein from Vibrio cholerae (458 aa); 30.1% identity in 442 aa overlap. 12 transmembrane regions were found by PSORT.; MATE efflux family protein 1059103..1060527 Clostridium perfringens str. 13 989124 NP_561781.1 CDS CPE0865 NC_003366.1 1060634 1060807 D no significant homology.; hypothetical protein 1060634..1060807 Clostridium perfringens str. 13 989125 NP_561782.1 CDS CPE0866 NC_003366.1 1061148 1067462 D partially similar to sp:ANAG_HUMAN ALPHA-N-ACETYLGLUCOSAMINIDASE PRECURSOR (EC 3.2.1.50) (N-ACETYL-ALPHA- GLUCOSAMINIDASE) (NAG) from Homo sapiens (743 aa); 29.4% identity in 704 aa overlap; alpha-N-acetylglucosaminidase 1061148..1067462 Clostridium perfringens str. 13 989126 NP_561783.1 CDS CPE0867 NC_003366.1 1067722 1067901 D no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1067722..1067901 Clostridium perfringens str. 13 989127 NP_561784.1 CDS alr NC_003366.1 1068014 1069174 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(1068014..1069174) Clostridium perfringens str. 13 989128 NP_561785.1 CDS CPE0869 NC_003366.1 1069713 1070282 D similar to pir:H75040 ribosomal protein s18 alanine acetyltransferase related PAB0870 from Pyrococcus abyssi (strain Orsay) (173 aa); 31.3% identity in 144 aa overlap; GNAT family acetyltransferase 1069713..1070282 Clostridium perfringens str. 13 989129 NP_561786.1 CDS CPE0870 NC_003366.1 1070334 1071452 R similar to gpu:AP001520_63 two-component sensor histidine kinase from Bacillus halodurans (538 aa); 28% identity in 193 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; two-component sensor histidine kinase complement(1070334..1071452) Clostridium perfringens str. 13 989130 NP_561787.1 CDS CPE0871 NC_003366.1 1071723 1072286 R similar to gp:AF012132_4 AgrB from Staphylococcus epidermidis (195 aa); 27.5% identity in 142 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein complement(1071723..1072286) Clostridium perfringens str. 13 989131 NP_561788.1 CDS CPE0872 NC_003366.1 1072648 1074423 D similar to pir:D81414 probable aminopeptidase Cj0653c from Campylobacter jejuni (strain NCTC 11168) (596 aa); 44.5% identity in 587 aa overlap; metallopeptidase, M24 family 1072648..1074423 Clostridium perfringens str. 13 989132 NP_561789.1 CDS CPE0873 NC_003366.1 1074643 1075044 D no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1074643..1075044 Clostridium perfringens str. 13 989133 NP_561790.1 CDS CPE0874 NC_003366.1 1075169 1075387 D no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1075169..1075387 Clostridium perfringens str. 13 989134 NP_561791.1 CDS CPE0875 NC_003366.1 1075490 1076617 D similar to pir:D72513 probable aminopeptidase APE2081 from Aeropyrum pernix (strain K1) (382 aa); 40.6% identity in 377 aa overlap; metalloprotease 1075490..1076617 Clostridium perfringens str. 13 989135 NP_561792.1 CDS CPE0876 NC_003366.1 1076721 1077164 D partially similar to sp:TTR_PSESY ACETYLTRANSFERASE (EC 2.3.1.-) (TABTOXIN RESISTANCE PROTEIN) from Pseudomonas syringae pv. tabaci (177 aa); 35% identity in 60 aa overlap; GNAT family acetyltransferase 1076721..1077164 Clostridium perfringens str. 13 989136 NP_561793.1 CDS CPE0877 NC_003366.1 1077347 1078012 R similar to gpu:AP001512_265 BH1678 gene product from Bacillus halodurans (290 aa); 25.1% identity in 187 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein complement(1077347..1078012) Clostridium perfringens str. 13 989137 NP_561794.1 CDS CPE0878 NC_003366.1 1078174 1079346 R similar to gp:CPIS1136_1 C.perfringens IS1136 DNA from Clostridium perfringens (122 aa); 64.8% identity in 125 aa overlap; IS1136; transposase complement(1078174..1079346) Clostridium perfringens str. 13 989138 NP_561795.1 CDS CPE0879 NC_003366.1 1080208 1080750 D similar to gp:SCF56_14 acetyltransferase from Streptomyces coelicolor A3(2) (173 aa); 36.5% identity in 167 aa overlap; GNAT family acetyltransferase 1080208..1080750 Clostridium perfringens str. 13 989139 NP_561796.1 CDS CPE0880 NC_003366.1 1081006 1081761 R no significant homology. 4 transmembrane regions were found by PSORT.; hypothetical protein complement(1081006..1081761) Clostridium perfringens str. 13 989140 NP_561797.1 CDS nagI NC_003366.1 1081969 1085862 D similar to sp:NAGH_CLOPE HYALURONOGLUCOSAMINIDASE PRECURSOR (EC 3.2.1.35) (HYALURONIDASE) (MU TOXIN) from Clostridium perfringens (1042 aa); 25.7% identity in 1006 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hyaluronidase 1081969..1085862 Clostridium perfringens str. 13 989141 NP_561798.1 CDS CPE0882 NC_003366.1 1086183 1086503 R similar to pir:A72336 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (106 aa); 54.8% identity in 104 aa overlap; hypothetical protein complement(1086183..1086503) Clostridium perfringens str. 13 989142 NP_561799.1 CDS CPE0883 NC_003366.1 1086932 1087120 D no significant homology.; hypothetical protein 1086932..1087120 Clostridium perfringens str. 13 989143 NP_561800.1 CDS CPE0884 NC_003366.1 1087176 1087991 D similar to pir:H75077 abc transporter, ATP-binding protein PAB1696 from Pyrococcus abyssi (strain Orsay) (253 aa); 41.9% identity in 236 aa overlap; ATP-binding protein; ABC transporter 1087176..1087991 Clostridium perfringens str. 13 989144 NP_561801.1 CDS CPE0885 NC_003366.1 1087988 1089637 D no significant homology.; hypothetical protein 1087988..1089637 Clostridium perfringens str. 13 989145 NP_561802.1 CDS CPE0886 NC_003366.1 1089786 1090571 R no significant homology. N-terminal signal sequence was found by PSORT; LysM domain-containing protein complement(1089786..1090571) Clostridium perfringens str. 13 989146 NP_561803.1 CDS CPE0887 NC_003366.1 1090894 1091445 R similar to pir:F70426 conserved hypothetical protein aq_1457 from Aquifex aeolicus (210 aa); 32.3% identity in 158 aa overlap; hypothetical protein complement(1090894..1091445) Clostridium perfringens str. 13 989147 NP_561804.1 CDS CPE0888 NC_003366.1 1091766 1092416 D similar to gpu:AP001511_170 BH1281 gene product from Bacillus halodurans (207 aa); 33% identity in 209 aa overlap; pyrophosphatase, MutT/nudix family 1091766..1092416 Clostridium perfringens str. 13 989148 NP_561805.1 CDS CPE0889 NC_003366.1 1092507 1092926 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1092507..1092926 Clostridium perfringens str. 13 989149 NP_561806.1 CDS CPE0890 NC_003366.1 1093292 1093546 D similar to pir:B81322 probable integral membrane protein (dedA homolog) Cj1168c from Campylobacter jejuni (strain NCTC 11168) (200 aa); 37.5% identity in 80 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing). N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1093292..1093546 Clostridium perfringens str. 13 989150 NP_561807.1 CDS CPE0891 NC_003366.1 1093462 1093917 D similar to pir:B81322 probable integral membrane protein (dedA homolog) Cj1168c from Campylobacter jejuni (strain NCTC 11168) (200 aa); 38.2% identity in 76 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing). 2 transmembrane regions were found by PSORT.; hypothetical protein 1093462..1093917 Clostridium perfringens str. 13 989151 NP_561808.1 CDS CPE0892 NC_003366.1 1094185 1095315 D similar to sp:ADH1_CLOAB NADPH-DEPENDENT BUTANOL DEHYDROGENASE (EC 1.1.1.-) (BDH) from Clostridium acetobutylicum (370 aa); 44.5% identity in 371 aa overlap; NADPH-dependent butanol dehydrogenase 1094185..1095315 Clostridium perfringens str. 13 989152 NP_561809.1 CDS pduU NC_003366.1 1095669 1096019 D similar to sp:PDUU_SALTY PROPANEDIOL UTILIZATION PROTEIN PDUU from Salmonella enterica serovar Typhimurium (116 aa); 61.4% identity in 114 aa overlap; propanediol utilization protein 1095669..1096019 Clostridium perfringens str. 13 989153 NP_561810.1 CDS pduV NC_003366.1 1096023 1096457 D similar to sp:PDUV_SALTY PROPANEDIOL UTILIZATION PROTEIN PDUV from Salmonella enterica serovar Typhimurium (150 aa); 41.5% identity in 142 aa overlap. 1 transmembrane region was found by PSORT; propanediol utilization protein 1096023..1096457 Clostridium perfringens str. 13 989154 NP_561811.1 CDS CPE0895 NC_003366.1 1096475 1097050 D similar to pir:T35758 probable response regulator from Streptomyces coelicolor (218 aa); 38.5% identity in 182 aa overlap; two-component response regulator 1096475..1097050 Clostridium perfringens str. 13 989155 NP_561812.1 CDS CPE0896 NC_003366.1 1097054 1098481 D similar to pir:E70596 hypothetical protein Rv3220c from Mycobacterium tuberculosis (strain H37RV) (501 aa); 25.8% identity in 461 aa overlap. Also similar to many histidine kinases; two-component sensor histidine kinase 1097054..1098481 Clostridium perfringens str. 13 989156 NP_561813.1 CDS eutA NC_003366.1 1098691 1100124 D ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase 1098691..1100124 Clostridium perfringens str. 13 989157 NP_561814.1 CDS eutB NC_003366.1 1100143 1101510 D similar to sp:EUTB_ECOLI ETHANOLAMINE AMMONIA-LYASE HEAVY CHAIN (EC 4.3.1.7) from Escherichia coli (453 aa); 61.7% identity in 452 aa overlap; ethanolamine ammonia-lyase large subunit 1100143..1101510 Clostridium perfringens str. 13 989158 NP_561815.1 CDS eutC NC_003366.1 1101527 1102414 D catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 1101527..1102414 Clostridium perfringens str. 13 989159 NP_561816.1 CDS eutL NC_003366.1 1102436 1103089 D similar to sp:EUTL_ECOLI ETHANOLAMINE UTILIZATION PROTEIN EUTL from Escherichia coli (219 aa); 49.1% identity in 212 aa overlap; ethanolamine utilization protein 1102436..1103089 Clostridium perfringens str. 13 989160 NP_561817.1 CDS pduJ NC_003366.1 1103102 1103887 D partially similar to gp:AF026270_10 PduJ from Salmonella enterica serovar Typhimurium (91 aa); 50.6% identity in 87 aa overlap. 1 transmembrane region was found by PSORT; propanediol utilization protein 1103102..1103887 Clostridium perfringens str. 13 989161 NP_561818.1 CDS adhE NC_003366.1 1103887 1105365 D similar to N-termminal of pir:DEEC acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) / alcohol dehydrogenase (EC 1.1.1.1) from Escherichia coli (891 aa); 41.1% identity in 440 aa overlap. 1 transmembrane region was found by PSORT; alcohol dehydrogenase 1103887..1105365 Clostridium perfringens str. 13 989162 NP_561819.1 CDS pduJ NC_003366.1 1105721 1106011 D similar to prf:2520232K pduJ gene from Salmonella enterica (91 aa); 58% identity in 88 aa overlap; propanediol utilization protein 1105721..1106011 Clostridium perfringens str. 13 989163 NP_561820.1 CDS eutT NC_003366.1 1106050 1106865 D similar to sp:EUTT_ECOLI ETHANOLAMINE UTILIZATION COBALAMIN ADENOSYLTRANSFERASE (EC 2.5.1.17) from Escherichia coli (267 aa); 30.4% identity in 217 aa overlap; ethanolamine utilization cobalamin adenosyltransferase 1106050..1106865 Clostridium perfringens str. 13 989164 NP_561821.1 CDS pduL NC_003366.1 1106875 1107510 D similar to prf:2520232M pduL gene from Salmonella enterica (210 aa); 53.5% identity in 198 aa overlap; propanediol utilization protein 1106875..1107510 Clostridium perfringens str. 13 989165 NP_561822.1 CDS CPE0906 NC_003366.1 1107716 1108474 D no significant homology.; hypothetical protein 1107716..1108474 Clostridium perfringens str. 13 989166 NP_561823.1 CDS eutN NC_003366.1 1108622 1108894 D similar to sp:EUTN_SALTY ETHANOLAMINE UTILIZATION PROTEIN EUTN from Salmonella typhimurium (100 aa); 34.5% identity in 87 aa overlap; ethanolamine utilization protein 1108622..1108894 Clostridium perfringens str. 13 989167 NP_561824.1 CDS pduT NC_003366.1 1108896 1109450 D similar to gp:AF026270_19 PduT from Salmonella typhimurium (184 aa); 37.5% identity in 184 aa overlap; propanediol utilization protein 1108896..1109450 Clostridium perfringens str. 13 989168 NP_561825.1 CDS eutH NC_003366.1 1109501 1110598 D similar to sp:EUTH_ECOLI ETHANOLAMINE UTILIZATION PROTEIN EUTH ( ETHANOLAMINE TRANSPORTER) from Escherichia coli (370 aa); 48.4% identity in 353 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; ethanolamine utilization protein 1109501..1110598 Clostridium perfringens str. 13 989169 NP_561826.1 CDS eutQ NC_003366.1 1110601 1111074 D similar to sp:EUTQ_SALTY ETHANOLAMINE UTILIZATION PROTEIN EUTQ from Salmonella typhimurium (229 aa); 36.4% identity in 151 aa overlap; ethanolamine utilization protein 1110601..1111074 Clostridium perfringens str. 13 989170 NP_561827.1 CDS bsaA NC_003366.1 1111442 1111918 D similar to sp:GPO_LACLC GLUTATHIONE PEROXIDASE (EC 1.11.1.9) from Lactococcus lactis (157 aa); 59.2% identity in 157 aa overlap; glutathione peroxidase 1111442..1111918 Clostridium perfringens str. 13 989171 NP_561828.1 CDS CPE0912 NC_003366.1 1112351 1112896 D similar to pir:B70351 ribosomal-protein-alanine acetyltransferase from Aquifex aeolicus (154 aa); 28.2% identity in 78 aa overlap; hypothetical protein 1112351..1112896 Clostridium perfringens str. 13 989172 NP_561829.1 CDS CPE0913 NC_003366.1 1113188 1113499 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1113188..1113499 Clostridium perfringens str. 13 989173 NP_561830.1 CDS CPE0914 NC_003366.1 1113813 1115453 D partially similar to pir:A70399 conserved hypothetical protein aq_1151 from Aquifex aeolicus (814 aa); 30% identity in 257 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1113813..1115453 Clostridium perfringens str. 13 989174 NP_561831.1 CDS CPE0915 NC_003366.1 1115535 1116155 D similar to pir:T17189 conserved hypothetical protein CAB06296 from Chlorobium vibrioforme (192 aa); 40.9% identity in 181 aa overlap; NADPH-dependent FMN reductase 1115535..1116155 Clostridium perfringens str. 13 989175 NP_561832.1 CDS CPE0916 NC_003366.1 1116597 1117022 D no significant homology.; hypothetical protein 1116597..1117022 Clostridium perfringens str. 13 989176 NP_561833.1 CDS nrdD NC_003366.1 1117404 1119164 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1117404..1119164 Clostridium perfringens str. 13 989177 NP_561834.1 CDS CPE0918 NC_003366.1 1119215 1119619 D no significant homology.; hypothetical protein 1119215..1119619 Clostridium perfringens str. 13 989178 NP_561835.1 CDS CPE0919 NC_003366.1 1119814 1120536 D no significant homology.; hypothetical protein 1119814..1120536 Clostridium perfringens str. 13 989179 NP_561836.1 CDS CPE0920 NC_003366.1 1120741 1120959 R no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein complement(1120741..1120959) Clostridium perfringens str. 13 989180 NP_561837.1 CDS CPE0921 NC_003366.1 1121179 1121721 D similar to pir:C75136 hypothetical protein PAB0597 from Pyrococcus abyssi (strain Orsay) (187 aa); 29.6% identity in 179 aa overlap. 1 transmembrane region was found by PSORT; nitroreductase 1121179..1121721 Clostridium perfringens str. 13 989181 NP_561838.1 CDS CPE0922 NC_003366.1 1122001 1122627 D no significant homology.; hypothetical protein 1122001..1122627 Clostridium perfringens str. 13 989182 NP_561839.1 CDS CPE0923 NC_003366.1 1122654 1123067 D no significant homology.; hypothetical protein 1122654..1123067 Clostridium perfringens str. 13 989183 NP_561840.1 CDS CPE0924 NC_003366.1 1123136 1123966 D similar to pir:E69013 conserved hypothetical protein MTH1101 from Methanobacterium thermoautotrophicum (strain Delta H) (260 aa); 30% identity in 273 aa overlap; metallo-beta-lactamase 1123136..1123966 Clostridium perfringens str. 13 989184 NP_561841.1 CDS CPE0925 NC_003366.1 1124142 1124318 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1124142..1124318 Clostridium perfringens str. 13 989185 NP_561842.1 CDS glpF NC_003366.1 1124547 1125251 D similar to sp:GLPF_THEMA PROBABLE GLYCEROL UPTAKE FACILITATOR PROTEIN from Thermotoga maritima (strain MSB8) (234 aa); 61.5% identity in 234 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; glycerol uptake facilitator protein 1124547..1125251 Clostridium perfringens str. 13 989186 NP_561843.1 CDS CPE0927 NC_003366.1 1125438 1126670 D similar to gpu:AP001514_116 BH2110 gene product from Bacillus halodurans (585 aa); 36.5% identity in 233 aa overlap. Also similar to many histidine kinases. 1 transmembrane region was found by PSORT; sensor histidine kinase 1125438..1126670 Clostridium perfringens str. 13 989187 NP_561844.1 CDS CPE0928 NC_003366.1 1126690 1127442 D similar to gpu:AP001519_194 two-component response regulator from Bacillus halodurans (257 aa); 30.8% identity in 247 aa overlap; two-component response regulator 1126690..1127442 Clostridium perfringens str. 13 989188 NP_561845.1 CDS CPE0929 NC_003366.1 1127780 1129444 D similar to prf:2223300A adenosylcobalamin-dependent glycerol dehydrogenase from Klebsiella pneumoniae (555 aa); 80.8% identity in 553 aa overlap; coenzyme B12-dependent glycerol dehydrogenase large subunit 1127780..1129444 Clostridium perfringens str. 13 989189 NP_561846.1 CDS CPE0930 NC_003366.1 1129452 1130024 D similar to prf:2222228B coenzyme B12-dependent glycerol dehydratase from Citrobacter freundii (194 aa); 60.9% identity in 184 aa overlap; coenzyme B12-dependent glycerol dehydrogenase medium subunit 1129452..1130024 Clostridium perfringens str. 13 989190 NP_561847.1 CDS CPE0931 NC_003366.1 1130044 1130469 D similar to prf:2417317C B12-dependent glycerol dehydrogenase:SUBUNIT=small from Clostridium pasteurianum (146 aa); 70.5% identity in 132 aa overlap; coenzyme B12-dependent glycerol dehydrogenase small subunit 1130044..1130469 Clostridium perfringens str. 13 989191 NP_561848.1 CDS CPE0932 NC_003366.1 1130486 1132336 D similar to prf:2417317D ORF Z from Clostridium pasteurianum (602 aa); 69.5% identity in 603 aa overlap. 1 transmembrane region was found by PSORT; glycerol dehydratase reactivation factor, large subunit 1130486..1132336 Clostridium perfringens str. 13 989192 NP_561849.1 CDS CPE0933 NC_003366.1 1132329 1132679 D similar to sp:YDHX_CITFR HYPOTHETICAL 12.5 KDA PROTEIN IN DHAR-DHAT INTERGENIC REGION (ORFX) from Citrobacter freundii (117 aa); 40.5% identity in 74 aa overlap; glycerol dehydratase reactivation factor, small subunit 1132329..1132679 Clostridium perfringens str. 13 989193 NP_561850.1 CDS CPE0934 NC_003366.1 1132698 1133210 D similar to sp:YDHW_CITFR HYPOTHETICAL 19.8 KDA PROTEIN IN DHAR-DHAT INTERGENIC REGION (ORFW) from Citrobacter freundii (176 aa); 59.6% identity in 166 aa overlap; hypothetical protein 1132698..1133210 Clostridium perfringens str. 13 989194 NP_561851.1 CDS CPE0935 NC_003366.1 1133234 1133662 D similar to prf:2324292C ORF Y from Clostridium pasteurianum (143 aa); 52.2% identity in 136 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1133234..1133662 Clostridium perfringens str. 13 989195 NP_561852.1 CDS CPE0936 NC_003366.1 1133756 1134913 D similar to prf:2324292D 1,3-propanediol dehydrogenase from Clostridium pasteurianum (385 aa); 85.7% identity in 385 aa overlap; 1,3-propanediol dehydrogenase 1133756..1134913 Clostridium perfringens str. 13 989196 NP_561853.1 CDS CPE0937 NC_003366.1 1135498 1136967 D similar to gp:CLOPBG_4 membrane-spanning transporter protein from Clostridium perfringens (495 aa); 33.1% identity in 417 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; amino acid permease 1135498..1136967 Clostridium perfringens str. 13 989197 NP_561854.1 CDS CPE0938 NC_003366.1 1137256 1137930 D similar to pir:B71309 hypothetical protein TP0572 from Treponema pallidum (360 aa); 33.3% identity in 120 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 1137256..1137930 Clostridium perfringens str. 13 989198 NP_561855.1 CDS CPE0939 NC_003366.1 1138271 1138783 D similar to pir:G81269 probable acetyltransferase Cj1715 from Campylobacter jejuni (strain NCTC 11168) (176 aa); 31% identity in 158 aa overlap; GNAT family acetyltransferase 1138271..1138783 Clostridium perfringens str. 13 989199 NP_561856.1 CDS CPE0940 NC_003366.1 1138851 1139621 R no significant homology.; hypothetical protein complement(1138851..1139621) Clostridium perfringens str. 13 989200 NP_561857.1 CDS CPE0941 NC_003366.1 1139727 1140545 R no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein complement(1139727..1140545) Clostridium perfringens str. 13 989201 NP_561858.1 CDS CPE0942 NC_003366.1 1140656 1141015 R similar to pir:S74723 hypothetical protein sll0939 from Synechocystis sp. (strain PCC 6803) (125 aa); 30.2% identity in 96 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(1140656..1141015) Clostridium perfringens str. 13 989202 NP_561859.1 CDS CPE0943 NC_003366.1 1141047 1141391 R similar to pir:C75409 conserved hypothetical protein from Deinococcus radiodurans (109 aa); 44.6% identity in 56 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(1141047..1141391) Clostridium perfringens str. 13 989203 NP_561860.1 CDS pldB NC_003366.1 1141575 1142564 D similar to sp:PLDB_ECOLI LYSOPHOSPHOLIPASE L2 (EC 3.1.1.5) (LECITHINASE B) from Escherichia coli (340 aa); 30.2% identity in 301 aa overlap; lysophospholipase 1141575..1142564 Clostridium perfringens str. 13 989204 NP_561861.1 CDS CPE0945 NC_003366.1 1142621 1143277 R no significant homology. S.D. unclear.; hypothetical protein complement(1142621..1143277) Clostridium perfringens str. 13 989205 NP_561862.1 CDS CPE0946 NC_003366.1 1143533 1144414 R no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein complement(1143533..1144414) Clostridium perfringens str. 13 989206 NP_561863.1 CDS CPE0947 NC_003366.1 1145169 1146476 D similar to pir:D81418 probable transmembrane symporter Cj0025c from Campylobacter jejuni (strain NCTC 11168) (461 aa); 39.3% identity in 374 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; transmembrane symporter 1145169..1146476 Clostridium perfringens str. 13 989207 NP_561864.1 CDS CPE0948 NC_003366.1 1146821 1147510 D similar to gpu:AP001509_258 two-component response regulator from Bacillus halodurans (234 aa); 41.9% identity in 222 aa overlap. 1 transmembrane region was found by PSORT; DNA-binding response regulator 1146821..1147510 Clostridium perfringens str. 13 989208 NP_561865.1 CDS CPE0949 NC_003366.1 1147720 1148640 D similar to sp:BCRA_BACLI BACITRACIN TRANSPORT ATP-BINDING PROTEIN BCRA from Bacillus licheniformis (306 aa); 42.4% identity in 302 aa overlap; ATP-binding protein; ABC transporter 1147720..1148640 Clostridium perfringens str. 13 989209 NP_561866.1 CDS CPE0950 NC_003366.1 1148633 1149385 D no significant homology. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 1148633..1149385 Clostridium perfringens str. 13 989210 NP_561867.1 CDS CPE0951 NC_003366.1 1149399 1150304 D similar to prf:1502267A phoR gene from Bacillus subtilis (579 aa); 32.2% identity in 261 aa overlap. N-terminal signal sequence was found by PSORT; sensor histidine kinase 1149399..1150304 Clostridium perfringens str. 13 989211 NP_561868.1 CDS CPE0952 NC_003366.1 1150404 1150631 R no significant homology.; hypothetical protein complement(1150404..1150631) Clostridium perfringens str. 13 989212 NP_561869.1 CDS CPE0953 NC_003366.1 1150930 1152141 D similar to gpu:AP001518_110 BH3279 gene product from Bacillus halodurans (422 aa); 38.9% identity in 396 aa overlap. N-terminal signal sequence was found by PSORT; pyridine nucleotide-disulfide oxidoreductase 1150930..1152141 Clostridium perfringens str. 13 989213 NP_561870.1 CDS gpo NC_003366.1 1152358 1152894 D similar to sp:GPXA_NEIME GLUTATHIONE PEROXIDASE HOMOLOG from Neisseria meningitidis (177 aa); 56.5% identity in 161 aa overlap; glutathione peroxidase 1152358..1152894 Clostridium perfringens str. 13 989214 NP_561871.1 CDS clg NC_003366.1 1153011 1154204 R similar to gp:AB004104_3 ORF10291-3 from Clostridium perfringens (113 aa); 47.5% identity in 40 aa overlap; collagen triple helix repeat protein complement(1153011..1154204) Clostridium perfringens str. 13 989215 NP_561872.1 CDS CPE0956 NC_003366.1 1154306 1154896 R similar to gp:AB004104_2 ORF10291-2 from Clostridium perfringens (196 aa); 72.4% identity in 196 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; metal-dependent hydrolase complement(1154306..1154896) Clostridium perfringens str. 13 989216 NP_561873.1 CDS CPE0957 NC_003366.1 1155088 1155306 R no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein complement(1155088..1155306) Clostridium perfringens str. 13 989217 NP_561874.1 CDS mutT NC_003366.1 1155516 1156130 D similar to gp:AB004104_1 ORF10291-1 from Clostridium perfringens (198 aa); 99.5% identity in 198 aa overlap; mutator MutT protein 1155516..1156130 Clostridium perfringens str. 13 989218 NP_561875.1 CDS CPE0959 NC_003366.1 1156225 1156380 R no significant homology.; hypothetical protein complement(1156225..1156380) Clostridium perfringens str. 13 989219 NP_561876.1 CDS CPE0960 NC_003366.1 1156509 1157150 D similar to pir:G69838 hypothetical protein yisX from Bacillus subtilis (212 aa); 33.3% identity in 162 aa overlap; hypothetical protein 1156509..1157150 Clostridium perfringens str. 13 989220 NP_561877.1 CDS CPE0961 NC_003366.1 1157357 1157788 D similar to pir:E69857 conserved hypothetical protein ykmA from Bacillus subtilis (147 aa); 53.2% identity in 141 aa overlap; MarR family; MarR family transcriptional regulator 1157357..1157788 Clostridium perfringens str. 13 989221 NP_561878.1 CDS CPE0962 NC_003366.1 1158113 1159072 D no significant homology. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; hypothetical protein 1158113..1159072 Clostridium perfringens str. 13 989222 NP_561879.1 CDS CPE0963 NC_003366.1 1159176 1160798 R similar to sp:YJEM_ECOLI HYPOTHETICAL 54.7 KDA PROTEIN IN POXA-PSD INTERGENIC REGION from Escherichia coli (500 aa); 51.5% identity in 491 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; transporter complement(1159176..1160798) Clostridium perfringens str. 13 989223 NP_561880.1 CDS CPE0964 NC_003366.1 1161203 1161373 D no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1161203..1161373 Clostridium perfringens str. 13 989224 NP_561881.1 CDS CPE0965 NC_003366.1 1161697 1163334 R similar to gpu:AE004307_6 sensory box/GGDEF family protein from Vibrio cholerae (884 aa); 46% identity in 161 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; diguanylate cyclase complement(1161697..1163334) Clostridium perfringens str. 13 989225 NP_561882.1 CDS CPE0966 NC_003366.1 1163773 1164252 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1163773..1164252 Clostridium perfringens str. 13 989226 NP_561883.1 CDS CPE0967 NC_003366.1 1164789 1165952 D similar to pir:G71309 probable glutamate/ aspartate transporter from Treponema pallidum (396 aa); 51.5% identity in 355 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; glutamate/ aspartate transporter 1164789..1165952 Clostridium perfringens str. 13 989227 NP_561884.1 CDS CPE0968 NC_003366.1 1166285 1167280 D no significant homology.; hypothetical protein 1166285..1167280 Clostridium perfringens str. 13 989228 NP_561885.1 CDS CPE0969 NC_003366.1 1167573 1169483 D partially similar to pir:H81242 conserved hypothetical protein NMB0050 from Neisseria meningitidis (716 aa); 20.4% identity in 289 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; hypothetical protein 1167573..1169483 Clostridium perfringens str. 13 989229 NP_561886.1 CDS CPE0970 NC_003366.1 1169513 1170967 R similar to pir:A69845 Na+/H+ antiporter homolog yjbQ from Bacillus subtilis (614 aa); 31.8% identity in 468 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; Na+/H+ antiporter complement(1169513..1170967) Clostridium perfringens str. 13 989230 NP_561887.1 CDS CPE0971 NC_003366.1 1170996 1171616 R similar to pir:B81534 hypothetical protein CP0835 from Chlamydophila pneumoniae (219 aa); 24.6% identity in 138 aa overlap; hypothetical protein complement(1170996..1171616) Clostridium perfringens str. 13 989231 NP_561888.1 CDS hisB NC_003366.1 1171854 1172639 D similar to pir:F75515 probable histidinol phosphatase from Deinococcus radiodurans (strain R1) (260 aa); 26.4% identity in 231 aa overlap; histidinol phosphatase 1171854..1172639 Clostridium perfringens str. 13 989232 NP_561889.1 CDS CPE0973 NC_003366.1 1172822 1172992 R no significant homology.; hypothetical protein complement(1172822..1172992) Clostridium perfringens str. 13 989233 NP_561890.1 CDS CPE0974 NC_003366.1 1173309 1174328 R similar to pir:D69856 conserved hypothetical protein ykgB from Bacillus subtilis (349 aa); 34.3% identity in 338 aa overlap; hypothetical protein complement(1173309..1174328) Clostridium perfringens str. 13 989234 NP_561891.1 CDS CPE0975 NC_003366.1 1174529 1176469 D similar to prf:2309135A tet(T) gene from Streptococcus pyogenes (651 aa); 31.4% identity in 609 aa overlap. 1 transmembrane region was found by PSORT; tetracycline resistant protein 1174529..1176469 Clostridium perfringens str. 13 989235 NP_561892.1 CDS CPE0976 NC_003366.1 1176634 1176987 D no significant homology.; hypothetical protein 1176634..1176987 Clostridium perfringens str. 13 989236 NP_561893.1 CDS CPE0977 NC_003366.1 1177094 1178044 R partially similar to gp:LPARGCL_1 hypothetical protein from Lactobacillus plantarum (124 aa); 47.7% identity in 109 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein complement(1177094..1178044) Clostridium perfringens str. 13 989237 NP_561894.1 CDS CPE0978 NC_003366.1 1178435 1179097 R partially similar to prf:2509287C K transporter-like protein from Lactococcus lactis (170 aa); 64.1% identity in 92 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein complement(1178435..1179097) Clostridium perfringens str. 13 989238 NP_561895.1 CDS CPE0979 NC_003366.1 1179675 1180187 R similar to gpu:AP001511_13 ferritin from Bacillus halodurans (169 aa); 49.7% identity in 165 aa overlap; ferritin complement(1179675..1180187) Clostridium perfringens str. 13 989239 NP_561896.1 CDS CPE0980 NC_003366.1 1180337 1181155 R similar to gpu:AF206272_3 transcriptional regulator from Streptococcus mutans (301 aa); 25.2% identity in 266 aa overlap; AraC/XylS family; transcriptional regulator complement(1180337..1181155) Clostridium perfringens str. 13 989240 NP_561897.1 CDS CPE0981 NC_003366.1 1181316 1183148 D partially similar to gpu:AE004147_1 beta-N-acetylhexosaminidase from Vibrio cholerae (637 aa); 23.4% identity in 359 aa overlap; glycosyl hydrolase family protein 1181316..1183148 Clostridium perfringens str. 13 989241 NP_561898.1 CDS CPE0982 NC_003366.1 1183266 1183733 D no significant homology.; hypothetical protein 1183266..1183733 Clostridium perfringens str. 13 989242 NP_561899.1 CDS CPE0983 NC_003366.1 1183854 1184630 R no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein complement(1183854..1184630) Clostridium perfringens str. 13 989243 NP_561900.1 CDS spoVAF NC_003366.1 1184746 1186167 R similar to gpu:AP001512_10 stage V sporulation protein AF from Bacillus halodurans (487 aa); 38% identity in 466 aa overlap. 4 transmembrane regions were found by PSORT.; stage V sporulation protein AF complement(1184746..1186167) Clostridium perfringens str. 13 989244 NP_561901.1 CDS CPE0985 NC_003366.1 1186397 1187905 R similar to sp:YFCC_HAEIN HYPOTHETICAL PROTEIN HI0594. from Haemophilus influenzae (509 aa); 46.9% identity in 493 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; hypothetical protein complement(1186397..1187905) Clostridium perfringens str. 13 989245 NP_561902.1 CDS CPE0986 NC_003366.1 1188307 1190178 D similar to pir:T17197 adenylate cyclase homolog from Spirulina platensis (1202 aa); 31.3% identity in 268 aa overlap. Also similar to many two-component sensor histidine kinases; two-component sensor histidine kinase 1188307..1190178 Clostridium perfringens str. 13 989246 NP_561903.1 CDS pfoS NC_003366.1 1190402 1191469 D similar to pir:A43577 regulatory protein pfoR from Clostridium perfringens (343 aa); 74.5% identity in 318 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; regulatory protein 1190402..1191469 Clostridium perfringens str. 13 989247 NP_561904.1 CDS sdhB NC_003366.1 1191501 1192181 D similar to gpu:AP001515_231 L-serine dehydratase beta subunit from Bacillus halodurans (220 aa); 40.9% identity in 215 aa overlap; L-serine dehydratase subunit beta 1191501..1192181 Clostridium perfringens str. 13 989248 NP_561905.1 CDS sdhA NC_003366.1 1192185 1193063 D similar to sp:SDHA_PEPAS L-SERINE DEHYDRATASE, ALPHA CHAIN (EC 4.2.1.13) (L-SERINE DEAMINASE) (SDH) (L-SD) from Peptostreptococcus asaccharolyticus (292 aa); 47.9% identity in 282 aa overlap. 3 transmembrane regions were found by PSORT.; L-serine dehydratase subunit alpha 1192185..1193063 Clostridium perfringens str. 13 989249 NP_561906.1 CDS CPE0990 NC_003366.1 1193131 1193865 R similar to gpu:AE004222_1 conserved hypothetical protein from Vibrio cholerae (310 aa); 37.8% identity in 230 aa overlap; hypothetical protein complement(1193131..1193865) Clostridium perfringens str. 13 989250 NP_561907.1 CDS truA NC_003366.1 1194072 1194818 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1194072..1194818 Clostridium perfringens str. 13 989251 NP_561908.1 CDS CPE0992 NC_003366.1 1194885 1195952 R similar to pir:H81334 hypothetical protein Cj1270c from Campylobacter jejuni (strain NCTC 11168) (363 aa); 41.7% identity in 348 aa overlap; oxidoreductase, 2-nitropropane dioxygenase complement(1194885..1195952) Clostridium perfringens str. 13 989252 NP_561909.1 CDS CPE0993 NC_003366.1 1196153 1196863 D similar to pir:E70790 probable transcription regulator Rv3676 from Mycobacterium tuberculosis (strain H37RV) (224 aa); 29.7% identity in 212 aa overlap. 1 transmembrane region was found by PSORT; Crp/Fnr family; transcriptional regulator 1196153..1196863 Clostridium perfringens str. 13 989253 NP_561910.1 CDS CPE0994 NC_003366.1 1196919 1197830 R similar to pir:D72416 hypothetical protein TM0109 from Thermotoga maritima (strain MSB8) (328 aa); 45.3% identity in 276 aa overlap; radical SAM domain-containing protein complement(1196919..1197830) Clostridium perfringens str. 13 989254 NP_561911.1 CDS CPE0995 NC_003366.1 1197974 1199008 D similar to pir:C69830 glucanase homolog yhfE from Bacillus subtilis (346 aa); 45% identity in 342 aa overlap; glucanase 1197974..1199008 Clostridium perfringens str. 13 989255 NP_561912.1 CDS CPE0996 NC_003366.1 1199327 1199998 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1199327..1199998 Clostridium perfringens str. 13 989256 NP_561913.1 CDS CPE0997 NC_003366.1 1200014 1201693 D no significant homology.; hypothetical protein 1200014..1201693 Clostridium perfringens str. 13 989257 NP_561914.1 CDS gltX NC_003366.1 1202355 1203995 D similar to sp:SYE_BACSU GLUTAMYL-TRNA SYNTHETASE (EC 6.1.1.17) (GLUTAMATE-TRNA LIGASE) (GLURS). from Bacillus subtilis (483 aa); 33.3% identity in 510 aa overlap; glutamyl-tRNA synthetase 1202355..1203995 Clostridium perfringens str. 13 989258 NP_561915.1 CDS CPE0999 NC_003366.1 1204190 1204345 D no significant homology.; hypothetical protein 1204190..1204345 Clostridium perfringens str. 13 989259 NP_561916.1 CDS CPE1000 NC_003366.1 1204572 1205186 D similar to pir:B72450 hypothetical protein APE2246 from Aeropyrum pernix (strain K1) (188 aa); 27.2% identity in 151 aa overlap; hypothetical protein 1204572..1205186 Clostridium perfringens str. 13 989260 NP_561917.1 CDS CPE1001 NC_003366.1 1205280 1206902 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(1205280..1206902) Clostridium perfringens str. 13 989261 NP_561918.1 CDS CPE1002 NC_003366.1 1207034 1208056 R no significant homology.; hypothetical protein complement(1207034..1208056) Clostridium perfringens str. 13 989262 NP_561919.1 CDS CPE1003 NC_003366.1 1208361 1208540 D similar to gpu:AP001515_87 BH2353 gene product from Bacillus halodurans (79 aa); 46.7% identity in 45 aa overlap; hypothetical protein 1208361..1208540 Clostridium perfringens str. 13 989263 NP_561920.1 CDS hprK NC_003366.1 1208552 1209475 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 1208552..1209475 Clostridium perfringens str. 13 989264 NP_561921.1 CDS CPE1005 NC_003366.1 1209520 1210449 D similar to C-terminal of pir:S75981 magnesium/cobalt transport protein sll0507 from Synechocystis sp. (strain PCC 6803) (387 aa); 22.4% identity in 263 aa overlap. 2 transmembrane regions were found by PSORT.; divalent cation transporter 1209520..1210449 Clostridium perfringens str. 13 989265 NP_561922.1 CDS CPE1006 NC_003366.1 1210516 1211922 D catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1 1210516..1211922 Clostridium perfringens str. 13 989271 NP_561923.1 CDS CPE1007 NC_003366.1 1212047 1212634 D partially similar to gp:D90740_3 Hypothetical 24.0K protein from Escherichia coli (476 aa); 27.6% identity in 170 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1212047..1212634 Clostridium perfringens str. 13 989281 NP_561924.1 CDS CPE1008 NC_003366.1 1212707 1213570 D similar to gp:BCE243712_8 YkoW protein from Bacillus cereus (892 aa); 30.9% identity in 278 aa overlap; hypothetical protein 1212707..1213570 Clostridium perfringens str. 13 989292 NP_561925.1 CDS mgsA NC_003366.1 1213738 1214097 D catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1213738..1214097 Clostridium perfringens str. 13 989298 NP_561926.1 CDS CPE1010 NC_003366.1 1214278 1214613 D no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1214278..1214613 Clostridium perfringens str. 13 989310 NP_561927.1 CDS CPE1011 NC_003366.1 1214739 1214999 D no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1214739..1214999 Clostridium perfringens str. 13 989314 NP_561928.1 CDS CPE1012 NC_003366.1 1215083 1215463 D similar to pir:G75032 probable translation initiation inhibitor PAB0825 from Pyrococcus abyssi (strain Orsay) (127 aa); 61% identity in 123 aa overlap; endoribonuclease L-PSP 1215083..1215463 Clostridium perfringens str. 13 989316 NP_561929.1 CDS CPE1013 NC_003366.1 1215507 1215752 D no significant homology.; hypothetical protein 1215507..1215752 Clostridium perfringens str. 13 989318 NP_561930.1 CDS CPE1014 NC_003366.1 1215859 1218495 R similar to gp:RCAFDXC_3 ORFU1 product, potential FMN-protein from Rhodobacter capsulatus (435 aa); 42.6% identity in 404 aa overlap; rubredoxin/flavodoxin/oxidoreductase complement(1215859..1218495) Clostridium perfringens str. 13 989319 NP_561931.1 CDS CPE1015 NC_003366.1 1218700 1219542 R similar to gpu:AP001518_203 BH3372 gene product from Bacillus halodurans (266 aa); 36.3% identity in 240 aa overlap. ATT start; hypothetical protein complement(1218700..1219542) Clostridium perfringens str. 13 989320 NP_561932.1 CDS pabA NC_003366.1 1219810 1220400 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 1219810..1220400 Clostridium perfringens str. 13 989321 NP_561933.1 CDS pabB NC_003366.1 1220406 1221752 D similar to gpu:AP001507_90 para-aminobenzoate synthase component I from Bacillus halodurans (486 aa); 37.3% identity in 405 aa overlap; para-aminobenzoate synthase, component I 1220406..1221752 Clostridium perfringens str. 13 989322 NP_561934.1 CDS CPE1018 NC_003366.1 1221806 1222540 D similar to gp:AP001507_92 4-amino-4-deoxychorismate lyase from Bacillus halodurans (295 aa); 28.6% identity in 266 aa overlap; 4-amino-4-deoxychorismate lyase 1221806..1222540 Clostridium perfringens str. 13 989323 NP_561935.1 CDS folE NC_003366.1 1222555 1223112 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1222555..1223112 Clostridium perfringens str. 13 989325 NP_561936.1 CDS CPE1020 NC_003366.1 1223137 1223610 D similar to sp:YBUK_CLOAB HYPOTHETICAL 18.9 KDA PROTEIN IN BUK 3'REGION (ORF4) from Clostridium acetobutylicum (strain NCIMB 8052) (157 aa); 50.3% identity in 155 aa overlap; hypothetical protein 1223137..1223610 Clostridium perfringens str. 13 989326 NP_561937.1 CDS folP NC_003366.1 1223623 1224432 D similar to gpu:AP001507_93 dihydropteroate synthase (dihydropteroate pyrophosphorylase) from Bacillus halodurans (280 aa); 60.7% identity in 262 aa overlap; dihydropteroate synthase 1223623..1224432 Clostridium perfringens str. 13 989328 NP_561938.1 CDS folA/folK NC_003366.1 1224445 1225266 D similar to sp:SULD_STRPN BIFUNCTIONAL FOLATE SYNTHESIS PROTEIN [INCLUDES: DIHYDRONEOPTERIN ALDOLASE (EC 4.1.2.25) (DHNA) from Streptococcus pneumoniae (270 aa); 43.9% identity in 271 aa overlap; dihydroneopterin aldolase/ 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 1224445..1225266 Clostridium perfringens str. 13 989329 NP_561939.1 CDS CPE1023 NC_003366.1 1225337 1225807 R no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein complement(1225337..1225807) Clostridium perfringens str. 13 989330 NP_561940.1 CDS CPE1024 NC_003366.1 1225922 1226362 D no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 1225922..1226362 Clostridium perfringens str. 13 989331 NP_561941.1 CDS pykA NC_003366.1 1226692 1227786 D partially similar to gp:AE002118_3 pyruvate kinase from Ureaplasma urealyticum (474 aa); 31.5% identity in 324 aa overlap; pyruvate kinase 1226692..1227786 Clostridium perfringens str. 13 989332 NP_561942.1 CDS CPE1026 NC_003366.1 1227783 1228340 R similar to pir:D69206 conserved hypothetical protein MTH798 from Methanobacterium thermoautotrophicum (strain Delta H) (186 aa); 34.7% identity in 167 aa overlap. 4 transmembrane regions were found by PSORT.; hypothetical protein complement(1227783..1228340) Clostridium perfringens str. 13 989333 NP_561943.1 CDS CPE1027 NC_003366.1 1228514 1229965 D similar to gpu:AP001509_234 BH0796 gene product from Bacillus halodurans (500 aa); 40.4% identity in 451 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1228514..1229965 Clostridium perfringens str. 13 989334 NP_561944.1 CDS CPE1028 NC_003366.1 1229962 1230303 R similar to pir:B75108 hypothetical protein PAB1926 from Pyrococcus abyssi (strain Orsay) (127 aa); 36.7% identity in 90 aa overlap; hypothetical protein complement(1229962..1230303) Clostridium perfringens str. 13 989335 NP_561945.1 CDS CPE1029 NC_003366.1 1230323 1230709 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(1230323..1230709) Clostridium perfringens str. 13 989336 NP_561946.1 CDS CPE1030 NC_003366.1 1231228 1232676 D similar to gpu:AP001509_234 BH0796 gene product from Bacillus halodurans (500 aa); 47.3% identity in 425 aa overlap; hypothetical protein 1231228..1232676 Clostridium perfringens str. 13 989337 NP_561947.1 CDS CPE1031 NC_003366.1 1232895 1233629 D similar to gpu:AP001510_120 transcriptional regulator (ArsR family) from Bacillus halodurans (99 aa); 40.3% identity in 72 aa overlap; ArsR family; transcriptional regulator 1232895..1233629 Clostridium perfringens str. 13 989338 NP_561948.1 CDS CPE1032 NC_003366.1 1233841 1235157 D similar to pir:T44439 indole-3-acetyl-L-aspartic acid hydrolase (EC 3.5.1.-) [validated] from Enterobacter agglomerans (441 aa); 40% identity in 425 aa overlap; amidohydrolase 1233841..1235157 Clostridium perfringens str. 13 989339 NP_561949.1 CDS CPE1033 NC_003366.1 1235303 1236103 R similar to sp:LICA_HAEIN LICA PROTEIN from Haemophilus influenzae (strain RM7004) (339 aa); 28.7% identity in 258 aa overlap; choline/ethanolamine kinase complement(1235303..1236103) Clostridium perfringens str. 13 989340 NP_561950.1 CDS cobT NC_003366.1 1236168 1237253 D catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1236168..1237253 Clostridium perfringens str. 13 989341 NP_561951.1 CDS CPE1035 NC_003366.1 1237291 1237851 D similar to gpu:AP001512_177 cobinamide kinase/cobinamide phosphate guanylyltransferase from Bacillus halodurans (188 aa); 23.4% identity in 154 aa overlap; hypothetical protein 1237291..1237851 Clostridium perfringens str. 13 989342 NP_561952.1 CDS cobS NC_003366.1 1237835 1238590 D similar to gpu:AP001512_179 cobalamin synthase from Bacillus halodurans (261 aa); 31.6% identity in 234 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; cobalamin synthase 1237835..1238590 Clostridium perfringens str. 13 989343 NP_561953.1 CDS CPE1037 NC_003366.1 1238604 1238984 D similar to gpu:AP001512_181 BH1594 gene product from Bacillus halodurans (140 aa); 39.2% identity in 51 aa overlap; hypothetical protein 1238604..1238984 Clostridium perfringens str. 13 989344 NP_561954.1 CDS cobC NC_003366.1 1238989 1239633 D similar to gpu:AP001512_180 alpha-ribazole-5'-phosphate phosphatase from Bacillus halodurans (209 aa); 31.3% identity in 176 aa overlap. 1 transmembrane region was found by PSORT; alpha-ribazole-5'-phosphate phosphatase 1238989..1239633 Clostridium perfringens str. 13 989345 NP_561955.1 CDS cobD NC_003366.1 1239636 1240583 D CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1239636..1240583 Clostridium perfringens str. 13 989346 NP_561956.1 CDS CPE1040 NC_003366.1 1240580 1241644 D cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 1240580..1241644 Clostridium perfringens str. 13 989347 NP_561957.1 CDS CPE1041 NC_003366.1 1242218 1243135 D similar to pir:G70046 iron-binding protein homolog yvrC from Bacillus subtilis (314 aa); 34.2% identity in 298 aa overlap; ferric ion-binding protein; iron ABC transporter 1242218..1243135 Clostridium perfringens str. 13 989348 NP_561958.1 CDS CPE1042 NC_003366.1 1243122 1244153 D similar to gpu:AP001512_173 ferric ion ABC transpoter (permease) from Bacillus halodurans (353 aa); 39.3% identity in 305 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; permease; iron ABC transporter 1243122..1244153 Clostridium perfringens str. 13 989349 NP_561959.1 CDS CPE1043 NC_003366.1 1244119 1244913 D similar to N-terminal half of gpu:AP001512_174 iron(III) dicitrate transport system (permease) from Bacillus halodurans (491 aa); 37.8% identity in 241 aa overlap; permease; iron(III) dicitrate transport system 1244119..1244913 Clostridium perfringens str. 13 989351 NP_561960.1 CDS CPE1044 NC_003366.1 1244923 1245576 D similar to pir:H69339 conserved hypothetical protein AF0720 from Archaeoglobus fulgidus (214 aa); 34.6% identity in 214 aa overlap; hypothetical protein 1244923..1245576 Clostridium perfringens str. 13 989353 NP_561961.1 CDS cbiP NC_003366.1 1245586 1247049 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1245586..1247049 Clostridium perfringens str. 13 989354 NP_561962.1 CDS CPE1046 NC_003366.1 1247325 1253222 D partially similar to gpu:AB012238_1 alpha-glucosidase from Bacillus thermoamyloliquefaciens (731 aa); 27.1% identity in 591 aa overlap; hypothetical protein 1247325..1253222 Clostridium perfringens str. 13 989355 NP_561963.1 CDS CPE1047 NC_003366.1 1253315 1253764 D similar to pir:B29504 hypothetical 18K protein (mer operon) from Staphylococcus aureus plasmid pI258 (161 aa); 25% identity in 132 aa overlap; hypothetical protein 1253315..1253764 Clostridium perfringens str. 13 989356 NP_561964.1 CDS CPE1048 NC_003366.1 1253987 1254430 D no significant homology.; hypothetical protein 1253987..1254430 Clostridium perfringens str. 13 989357 NP_561965.1 CDS CPE1049 NC_003366.1 1254652 1255818 D no significant homology.; hypothetical protein 1254652..1255818 Clostridium perfringens str. 13 989358 NP_561966.1 CDS CPE1050 NC_003366.1 1256109 1256909 D enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1256109..1256909 Clostridium perfringens str. 13 989359 NP_561967.1 CDS cfa NC_003366.1 1257260 1258444 R similar to pir:A81324 probable cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79) Cj1183c from Campylobacter jejuni (strain NCTC 11168) (387 aa); 46.8% identity in 391 aa overlap; cyclopropane-fatty-acyl-phospholipid synthase complement(1257260..1258444) Clostridium perfringens str. 13 989360 NP_561968.1 CDS CPE1052 NC_003366.1 1258777 1260132 D similar to pir:E64935 hypothetical protein b1757 from Escherichia coli (strain K-12) (440 aa); 36.4% identity in 404 aa overlap; thiosulfate sulfurtransferase 1258777..1260132 Clostridium perfringens str. 13 989361 NP_561969.1 CDS CPE1053 NC_003366.1 1260136 1260561 D no significant homology. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 1260136..1260561 Clostridium perfringens str. 13 989362 NP_561970.1 CDS CPE1054 NC_003366.1 1260786 1261025 D no significant homology.; hypothetical protein 1260786..1261025 Clostridium perfringens str. 13 989363 NP_561971.1 CDS CPE1055 NC_003366.1 1261234 1262004 D similar to pir:T48821 hypothetical protein 68B2.50 from Neurospora crassa (386 aa); 25% identity in 260 aa overlap; hypothetical protein 1261234..1262004 Clostridium perfringens str. 13 989364 NP_561972.1 CDS hisB NC_003366.1 1262188 1263012 D catalyzes the formation of L-histidinol from L-histidinol phosphate; histidinol-phosphatase 1262188..1263012 Clostridium perfringens str. 13 989365 NP_561973.1 CDS CPE1057 NC_003366.1 1263140 1264561 R partially similar to prf:2217303A periplasmic protein from Escherichia coli (262 aa); 26.7% identity in 101 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein complement(1263140..1264561) Clostridium perfringens str. 13 989366 NP_561974.1 CDS nadE NC_003366.1 1264921 1266582 R catalyzes the formation of NAD(+) from deamido-NAD(+) using either ammonia or glutamine as the nitrogen source; NAD synthetase complement(1264921..1266582) Clostridium perfringens str. 13 989367 NP_561975.1 CDS CPE1059 NC_003366.1 1267144 1267557 D no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1267144..1267557 Clostridium perfringens str. 13 989368 NP_561976.1 CDS CPE1060 NC_003366.1 1267577 1268527 D similar to sp:YBBK_ECOLI HYPOTHETICAL 33.7 KDA PROTEIN IN USHA-TESA INTERGENIC REGION from Escherichia coli (305 aa); 42.8% identity in 297 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1267577..1268527 Clostridium perfringens str. 13 989369 NP_561977.1 CDS alr NC_003366.1 1268707 1269759 D similar to sp:ALR_BORBU ALANINE RACEMASE (EC 5.1.1.1) from Borrelia burgdorferi (372 aa); 33.4% identity in 314 aa overlap; alanine racemase 1268707..1269759 Clostridium perfringens str. 13 989370 NP_561978.1 CDS CPE1062 NC_003366.1 1269992 1271026 D similar to pir:G72398 hypothetical protein TM0246 from Thermotoga maritima (strain MSB8) (224 aa); 32.4% identity in 182 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1269992..1271026 Clostridium perfringens str. 13 989371 NP_561979.1 CDS nqrD NC_003366.1 1271044 1271712 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 1271044..1271712 Clostridium perfringens str. 13 989372 NP_561980.1 CDS nqrE NC_003366.1 1271741 1272316 D similar to pir:A72399 Na-translocating NADH-quinone reductase, Nqr5 subunit from Thermotoga maritima (strain MSB8) (213 aa); 54.6% identity in 194 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; Na-translocating NADH-quinone reductase 1271741..1272316 Clostridium perfringens str. 13 989373 NP_561981.1 CDS CPE1065 NC_003366.1 1272333 1273139 D involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate; ferredoxin 1272333..1273139 Clostridium perfringens str. 13 989374 NP_561982.1 CDS CPE1066 NC_003366.1 1273220 1273720 D similar to pir:I55434 deoxycytidylate deaminase from Homo sapiens (178 aa); 60.1% identity in 158 aa overlap; cytidine/deoxycytidylate deaminase 1273220..1273720 Clostridium perfringens str. 13 989375 NP_561983.1 CDS CPE1067 NC_003366.1 1273892 1274356 D similar to gpu:AP001514_67 transcriptional regulator (MarR family) from Bacillus halodurans (149 aa); 30.7% identity in 101 aa overlap; MarR family; MarR family transcriptional regulator 1273892..1274356 Clostridium perfringens str. 13 989376 NP_561984.1 CDS fabH NC_003366.1 1274358 1275332 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1274358..1275332 Clostridium perfringens str. 13 989377 NP_561985.1 CDS fabD NC_003366.1 1275429 1276373 D similar to sp:FABD_BACSU MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE (EC 2.3.1.39) from Bacillus subtilis (317 aa); 43.5% identity in 310 aa overlap; malonyl CoA-ACP transacylase 1275429..1276373 Clostridium perfringens str. 13 989378 NP_561986.1 CDS fabG NC_003366.1 1276377 1277117 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1276377..1277117 Clostridium perfringens str. 13 989379 NP_561987.1 CDS fabF NC_003366.1 1277132 1278373 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 1277132..1278373 Clostridium perfringens str. 13 989380 NP_561988.1 CDS accB NC_003366.1 1278385 1278876 D similar to pir:H69580 acetyl-CoA carboxylase (biotin carboxyl carrier subunit) accB from Bacillus subtilis (159 aa); 41.4% identity in 162 aa overlap; biotin carboxyl carrier subunit; acetyl-CoA carboxylase biotin carboxyl carrier protein 1278385..1278876 Clostridium perfringens str. 13 989381 NP_561989.1 CDS fabZ NC_003366.1 1278879 1279298 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1278879..1279298 Clostridium perfringens str. 13 989382 NP_561990.1 CDS accC NC_003366.1 1279310 1280662 D Catalyzes the formation of malnoyl-CoA, which in turn controls the rate of fatty acid metabolism; biotin carboxylase 1279310..1280662 Clostridium perfringens str. 13 989383 NP_561991.1 CDS accD NC_003366.1 1280827 1281534 D similar to gpu:AP001517_288 acetyl-CoA carboxylase transferase beta subunit from Bacillus halodurans (282 aa); 49.8% identity in 289 aa overlap; transferase beta subunit; acetyl-CoA carboxylase carboxyl transferase subunit beta 1280827..1281534 Clostridium perfringens str. 13 989384 NP_561992.1 CDS accA NC_003366.1 1281527 1282342 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1281527..1282342 Clostridium perfringens str. 13 989385 NP_561993.1 CDS CPE1077 NC_003366.1 1282443 1282832 R similar to pir:C69525 conserved hypothetical protein AF2203 from Archaeoglobus fulgidus (119 aa); 35.3% identity in 85 aa overlap; PadR family transcriptional regulator complement(1282443..1282832) Clostridium perfringens str. 13 989386 NP_561994.1 CDS CPE1078 NC_003366.1 1282959 1283180 D no significant homology.; hypothetical protein 1282959..1283180 Clostridium perfringens str. 13 989387 NP_561995.1 CDS CPE1079 NC_003366.1 1283238 1283948 R similar to pir:E75018 endonuclease iv related protein PAB1103 from Pyrococcus abyssi (strain Orsay) (281 aa); 46.2% identity in 236 aa overlap; hypothetical protein complement(1283238..1283948) Clostridium perfringens str. 13 989388 NP_561996.1 CDS CPE1080 NC_003366.1 1284275 1284985 D similar to gpu:AP001512_163 pseudouridylate synthase from Bacillus halodurans (242 aa); 42.7% identity in 234 aa overlap; pseudouridylate synthase 1284275..1284985 Clostridium perfringens str. 13 989389 NP_561997.1 CDS CPE1081 NC_003366.1 1284976 1285542 D similar to pir:G81942 hypothetical protein NMA0960 from Neisseria meningitidis (group A strain Z2491) (188 aa); 41.1% identity in 168 aa overlap. ATC start; hypothetical protein 1284976..1285542 Clostridium perfringens str. 13 989390 NP_561998.1 CDS CPE1082 NC_003366.1 1285574 1286449 D similar to gpu:AP001517_62 BH2940 gene product from Bacillus halodurans (284 aa); 41.8% identity in 282 aa overlap. 1 transmembrane region was found by PSORT; RpiR family; RpiR family transcriptional regulator 1285574..1286449 Clostridium perfringens str. 13 989391 NP_561999.1 CDS CPE1083 NC_003366.1 1286708 1287886 D similar to gpu:AP001518_110 BH3279 gene product from Bacillus halodurans (422 aa); 38.5% identity in 379 aa overlap; hypothetical protein 1286708..1287886 Clostridium perfringens str. 13 989392 NP_562000.1 CDS cmk NC_003366.1 1288009 1288662 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1288009..1288662 Clostridium perfringens str. 13 989393 NP_562001.1 CDS lytB NC_003366.1 1288664 1289512 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1288664..1289512 Clostridium perfringens str. 13 989394 NP_562002.1 CDS CPE1086 NC_003366.1 1289622 1290416 D partially similar to pir:B70351 ribosomal-protein-alanine acetyltransferase from Aquifex aeolicus (154 aa); 41.2% identity in 97 aa overlap; hypothetical protein 1289622..1290416 Clostridium perfringens str. 13 989395 NP_562003.1 CDS CPE1087 NC_003366.1 1290516 1290665 R no significant homology.; hypothetical protein complement(1290516..1290665) Clostridium perfringens str. 13 989396 NP_562004.1 CDS CPE1088 NC_003366.1 1290802 1291374 D partially similar to pir:S37170 repB protein from Lactococcus lacti (381 aa); 25.1% identity in 175 aa overlap; hypothetical protein 1290802..1291374 Clostridium perfringens str. 13 989397 NP_562005.1 CDS CPE1089 NC_003366.1 1291513 1291977 D no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1291513..1291977 Clostridium perfringens str. 13 989398 NP_562006.1 CDS CPE1090 NC_003366.1 1292023 1292499 R no significant homology.; hypothetical protein complement(1292023..1292499) Clostridium perfringens str. 13 989399 NP_562007.1 CDS CPE1091 NC_003366.1 1292677 1293069 R no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(1292677..1293069) Clostridium perfringens str. 13 989400 NP_562008.1 CDS pac NC_003366.1 1293432 1294415 D similar to sp:PAC_BACSH PENICILLIN ACYLASE (EC 3.5.1.11) (PENICILLIN V AMIDASE) from Bacillus sphaericus (338 aa); 33.7% identity in 323 aa overlap; choloylglycine hydrolase 1293432..1294415 Clostridium perfringens str. 13 989401 NP_562009.1 CDS CPE1093 NC_003366.1 1294599 1295942 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1294599..1295942 Clostridium perfringens str. 13 989402 NP_562010.1 CDS CPE1094 NC_003366.1 1296398 1298011 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 1296398..1298011 Clostridium perfringens str. 13 989403 NP_562011.1 CDS CPE1095 NC_003366.1 1298199 1299215 D similar to sp:RIPX_BACSU PROBABLE INTEGRASE/RECOMBINASE RIPX from Bacillus subtilis (296 aa); 28% identity in 321 aa overlap; integrase/recombinase 1298199..1299215 Clostridium perfringens str. 13 989404 NP_562012.1 CDS CPE1096 NC_003366.1 1299873 1300172 D no significant homology.; hypothetical protein 1299873..1300172 Clostridium perfringens str. 13 989405 NP_562013.1 CDS CPE1097 NC_003366.1 1300313 1300525 R similar to pir:G82969 probable transcription regulator PA5403 from Pseudomonas aeruginosa (strain PAO1) (68 aa); 41.2% identity in 68 aa overlap; transcriptional regulator complement(1300313..1300525) Clostridium perfringens str. 13 989406 NP_562014.1 CDS CPE1098 NC_003366.1 1300712 1301176 D no significant homology.; hypothetical protein 1300712..1301176 Clostridium perfringens str. 13 989407 NP_562015.1 CDS CPE1099 NC_003366.1 1301201 1301503 D no significant homology.; hypothetical protein 1301201..1301503 Clostridium perfringens str. 13 989408 NP_562016.1 CDS CPE1100 NC_003366.1 1301594 1302286 D similar to N-terminal of gp:MHO243903_1 P75 protein from Mycoplasma hominis (654 aa); 26.2% identity in 168 aa overlap; hypothetical protein 1301594..1302286 Clostridium perfringens str. 13 989409 NP_562017.1 CDS CPE1101 NC_003366.1 1302323 1302556 D no significant homology.; hypothetical protein 1302323..1302556 Clostridium perfringens str. 13 989410 NP_562018.1 CDS CPE1102 NC_003366.1 1302601 1303431 D no significant homology; hypothetical protein 1302601..1303431 Clostridium perfringens str. 13 989411 NP_562019.1 CDS CPE1103 NC_003366.1 1303501 1306695 D N-terminal portion is similar to pir:T12827 hypothetical protein yonO from Bacillus subtilis phage SPBc2 (839 aa); 21.3% identity in 536 aa overlap; hypothetical protein 1303501..1306695 Clostridium perfringens str. 13 989412 NP_562020.1 CDS CPE1104 NC_003366.1 1306795 1307226 D no significant homology.; hypothetical protein 1306795..1307226 Clostridium perfringens str. 13 989413 NP_562021.1 CDS CPE1105 NC_003366.1 1307241 1307561 D no significant homology.; hypothetical protein 1307241..1307561 Clostridium perfringens str. 13 989414 NP_562022.1 CDS CPE1106 NC_003366.1 1307575 1307745 D no significant homology.; hypothetical protein 1307575..1307745 Clostridium perfringens str. 13 989415 NP_562023.1 CDS CPE1107 NC_003366.1 1307775 1308695 D no significant homology.; hypothetical protein 1307775..1308695 Clostridium perfringens str. 13 989416 NP_562024.1 CDS CPE1108 NC_003366.1 1309065 1309247 D no significant homology; hypothetical protein 1309065..1309247 Clostridium perfringens str. 13 989417 NP_562025.1 CDS CPE1109 NC_003366.1 1309449 1309904 D no significant homology.; hypothetical protein 1309449..1309904 Clostridium perfringens str. 13 989418 NP_562026.1 CDS CPE1110 NC_003366.1 1310119 1311216 D similar to pir:T28355 ORF MSV194 ALI motif gene family protein from Melanoplus sanguinipes entomopoxvirus (409 aa); 28.2% identity in 195 aa overlap; hypothetical protein 1310119..1311216 Clostridium perfringens str. 13 989419 NP_562027.1 CDS CPE1111 NC_003366.1 1311231 1311389 D no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1311231..1311389 Clostridium perfringens str. 13 989420 NP_562028.1 CDS CPE1112 NC_003366.1 1311383 1311649 D no significant homology.; hypothetical protein 1311383..1311649 Clostridium perfringens str. 13 989421 NP_562029.1 CDS CPE1113 NC_003366.1 1311688 1312071 D no significant homology.; hypothetical protein 1311688..1312071 Clostridium perfringens str. 13 989422 NP_562030.1 CDS CPE1114 NC_003366.1 1312073 1312252 D no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1312073..1312252 Clostridium perfringens str. 13 989423 NP_562031.1 CDS CPE1115 NC_003366.1 1312258 1312500 D no significant homology.; hypothetical protein 1312258..1312500 Clostridium perfringens str. 13 989424 NP_562032.1 CDS CPE1116 NC_003366.1 1312560 1312970 D similar to prf:2419278BV ORF from bacteriophage phi-PVL (113 aa); 33.7% identity in 95 aa overlap; hypothetical protein 1312560..1312970 Clostridium perfringens str. 13 989425 NP_562033.1 CDS CPE1117 NC_003366.1 1312983 1313567 D similar to pir:T00134 hypothetical protein 4 from Staphylococcus aureus phage phi PVL (155 aa); 28% identity in 150 aa overlap; hypothetical protein 1312983..1313567 Clostridium perfringens str. 13 989426 NP_562034.1 CDS CPE1118 NC_003366.1 1313567 1315243 D similar to gp:AF198256_11 phage D3 terminase-like protein from Haemophilus influenzae (555 aa); 25.9% identity in 528 aa overlap. 2 transmembrane regions were found by PSORT.; phage-related terminase 1313567..1315243 Clostridium perfringens str. 13 989427 NP_562035.1 CDS CPE1119 NC_003366.1 1315252 1315425 D no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1315252..1315425 Clostridium perfringens str. 13 989428 NP_562036.1 CDS CPE1120 NC_003366.1 1315442 1316665 D similar to pir:T13514 hypothetical protein 25 from Bacillus phage phi-105 (416 aa); 29.3% identity in 372 aa overlap; hypothetical protein 1315442..1316665 Clostridium perfringens str. 13 989429 NP_562037.1 CDS CPE1121 NC_003366.1 1316640 1317242 D similar to gp:AF198256_17 phage phi-C31 gp35-like protein from Haemophilus influenzae (188 aa); 35.2% identity in 159 aa overlap; phage phi-C31 gp35-like protein 1316640..1317242 Clostridium perfringens str. 13 989430 NP_562038.1 CDS CPE1122 NC_003366.1 1317279 1318415 D similar to pir:T13516 hypothetical protein 27 from bacteriophage phi-105 (397 aa); 32.6% identity in 371 aa overlap; phage-related head protein 1317279..1318415 Clostridium perfringens str. 13 989431 NP_562039.1 CDS CPE1123 NC_003366.1 1318478 1318771 D similar to pir:T13519 hypothetical protein 30 from Bacillus phage phi-105 (115 aa); 26.5% identity in 68 aa overlap; hypothetical protein 1318478..1318771 Clostridium perfringens str. 13 989432 NP_562040.1 CDS CPE1124 NC_003366.1 1318764 1319081 D no significant homology.; hypothetical protein 1318764..1319081 Clostridium perfringens str. 13 989433 NP_562041.1 CDS CPE1125 NC_003366.1 1319082 1319525 D similar to pir:T13521 hypothetical protein 32 from Bacillus phage phi-105 (127 aa); 27.7% identity in 119 aa overlap; hypothetical protein 1319082..1319525 Clostridium perfringens str. 13 989434 NP_562042.1 CDS CPE1126 NC_003366.1 1319535 1319885 D similar to pir:T13522 hypothetical protein 33 from Bacillus phage phi-105 (162 aa); 53.6% identity in 28 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1319535..1319885 Clostridium perfringens str. 13 989435 NP_562043.1 CDS CPE1127 NC_003366.1 1319901 1320500 D similar to pir:T13523 hypothetical protein 34 from Bacillus phage phi-105 (200 aa); 28.4% identity in 141 aa overlap; hypothetical protein 1319901..1320500 Clostridium perfringens str. 13 989436 NP_562044.1 CDS CPE1128 NC_003366.1 1320548 1320853 D no significant homology.; hypothetical protein 1320548..1320853 Clostridium perfringens str. 13 989437 NP_562045.1 CDS CPE1129 NC_003366.1 1321015 1321350 D no significant homology.; hypothetical protein 1321015..1321350 Clostridium perfringens str. 13 989438 NP_562046.1 CDS CPE1130 NC_003366.1 1321368 1324169 D similar to pir:T00148 hypothetical protein 15 from Staphylococcus aureus phage phi PVL (694 aa); 17.5% identity in 531 aa overlap. 2 transmembrane regions were found by PSORT.; hypothetical protein 1321368..1324169 Clostridium perfringens str. 13 989439 NP_562047.1 CDS CPE1131 NC_003366.1 1324150 1324845 D similar to gp:LBA131519_53 hypothetical protein from Lactobacillus bacteriophage phi adh (247 aa); 26.2% identity in 214 aa overlap; hypothetical protein 1324150..1324845 Clostridium perfringens str. 13 989440 NP_562048.1 CDS CPE1132 NC_003366.1 1324849 1327800 D partially similar to pir:F70700 hypothetical protein Rv0024 from Mycobacterium tuberculosis (strain H37RV) (281 aa); 40% identity in 120 aa overlap; hypothetical protein 1324849..1327800 Clostridium perfringens str. 13 989441 NP_562049.1 CDS CPE1133 NC_003366.1 1327849 1329723 D partially similar to gpu:AF278687_1 choline binding protein E from Streptococcus pneumoniae (627 aa); 26.4% identity in 447 aa overlap; choline binding protein 1327849..1329723 Clostridium perfringens str. 13 989442 NP_562050.1 CDS CPE1134 NC_003366.1 1329739 1331685 D no significant homology.; hypothetical protein 1329739..1331685 Clostridium perfringens str. 13 989443 NP_562051.1 CDS CPE1135 NC_003366.1 1331702 1331944 D no significant homology.; hypothetical protein 1331702..1331944 Clostridium perfringens str. 13 989444 NP_562052.1 CDS CPE1136 NC_003366.1 1332026 1332205 D similar to pir:JH0445 hypothetical 10.2K protein (lyc 5' region) from Clostridium acetobutylicum (86 aa); 25% identity in 52 aa overlap; hypothetical protein 1332026..1332205 Clostridium perfringens str. 13 989445 NP_562053.1 CDS CPE1137 NC_003366.1 1332271 1332474 D no significant homology. 2 transmembrane regions were found by PSORT.; hypothetical protein 1332271..1332474 Clostridium perfringens str. 13 989446 NP_562054.1 CDS CPE1138 NC_003366.1 1332512 1333426 D partially similar to sp:BCN5_CLOPE BACTERIOCIN BCN5 from Clostridium perfringens plasmid pIP404 (890 aa); 51.1% identity in 141 aa overlap; hypothetical protein 1332512..1333426 Clostridium perfringens str. 13 989447 NP_562055.1 CDS CPE1139 NC_003366.1 1334196 1334990 R no significant homology.; hypothetical protein complement(1334196..1334990) Clostridium perfringens str. 13 989448 NP_562056.1 CDS CPE1140 NC_003366.1 1335177 1335464 D no significant homology.; hypothetical protein 1335177..1335464 Clostridium perfringens str. 13 989449 NP_562057.1 CDS CPE1141 NC_003366.1 1335992 1336501 D no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1335992..1336501 Clostridium perfringens str. 13 989450 NP_562058.1 CDS CPE1142 NC_003366.1 1336950 1337537 D no significant homology.; hypothetical protein 1336950..1337537 Clostridium perfringens str. 13 989451 NP_562059.1 CDS CPE1143 NC_003366.1 1337651 1337983 D no significant homology.; hypothetical protein 1337651..1337983 Clostridium perfringens str. 13 989452 NP_562060.1 CDS CPE1144 NC_003366.1 1338112 1339077 R similar to prf:2515339A regulatory protein from Leuconostoc mesenteroides (312 aa); 33.4% identity in 302 aa overlap. 1 transmembrane region was found by PSORT; SorC family; transcriptional regulator complement(1338112..1339077) Clostridium perfringens str. 13 989453 NP_562061.1 CDS citG NC_003366.1 1339126 1339986 R similar to gpu:AE004165_6 citG protein from Vibrio cholerae (313 aa); 34.2% identity in 260 aa overlap. 1 transmembrane region was found by PSORT; CitG protein complement(1339126..1339986) Clostridium perfringens str. 13 989454 NP_562062.1 CDS citC NC_003366.1 1340264 1341301 D similar to gpu:AE004165_1 citrate (pro-3S)-lyase ligase from Vibrio cholerae (356 aa); 40.8% identity in 316 aa overlap; citrate (pro-3S)-lyase ligase 1340264..1341301 Clostridium perfringens str. 13 989455 NP_562063.1 CDS cilG NC_003366.1 1341325 1341630 D acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 1341325..1341630 Clostridium perfringens str. 13 989456 NP_562064.1 CDS cilB NC_003366.1 1341618 1342508 D similar to sp:CILB_LEUMC CITRATE LYASE BETA CHAIN (EC 4.1.3.6) (CITRASE) (CITRYL-COA LYASE SUBUNIT) (EC 4.1.3.34) from Leuconostoc mesenteroides (302 aa); 57.7% identity in 286 aa overlap; citrate lyase subunit beta 1341618..1342508 Clostridium perfringens str. 13 989457 NP_562065.1 CDS cilA NC_003366.1 1342512 1344071 D similar to sp:CILA_LEUMC CITRATE LYASE ALPHA CHAIN (EC 4.1.3.6) (CITRASE) (CITRATE COA- TRANSFERASE SUBUNIT) (EC 2.8.3.10) from Leuconostoc mesenteroides (512 aa); 58.7% identity in 508 aa overlap; citrate lyase subunit alpha 1342512..1344071 Clostridium perfringens str. 13 989458 NP_562066.1 CDS CPE1150 NC_003366.1 1344090 1344602 D partially similar to sp:CITG_LEUMC CITG PROTEIN from Leuconostoc mesenteroides (467 aa); 33.3% identity in 162 aa overlap; triphosphoribosyl-dephospho-CoA synthase 1344090..1344602 Clostridium perfringens str. 13 989459 NP_562067.1 CDS CPE1151 NC_003366.1 1344643 1345788 D similar to pir:T46727 probable malic enzyme from Weissella paramesenteroides plasmid (378 aa); 49.1% identity in 373 aa overlap. 1 transmembrane region was found by PSORT; malic enzyme; malate oxidoreductase 1344643..1345788 Clostridium perfringens str. 13 989460 NP_562068.1 CDS citN NC_003366.1 1345809 1347149 D similar to gpu:AE004164_11 citrate/sodium symporter from Vibrio cholerae (448 aa); 39.8% identity in 422 aa overlap. 11 transmembrane regions were found by PSORT.; citrate/sodium symporter 1345809..1347149 Clostridium perfringens str. 13 989461 NP_562069.1 CDS pflA NC_003366.1 1347518 1349752 D similar to sp:PFL_CLOPA FORMATE ACETYLTRANSFERASE (EC 2.3.1.54) (PYRUVATE FORMATE-LYASE) from Clostridium pasteurianum (740 aa); 73.7% identity in 744 aa overlap. 1 transmembrane region was found by PSORT; formate acetyltransferase 1347518..1349752 Clostridium perfringens str. 13 989462 YP_001293879.1 CDS pflA NC_003366.1 1350038 1350745 D pyruvate formate-lyase activating enzyme 1350038..1350745 Clostridium perfringens str. 13 989463 NP_562071.1 CDS mutS NC_003366.1 1351007 1353736 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1351007..1353736 Clostridium perfringens str. 13 989464 NP_562072.1 CDS mutL NC_003366.1 1353763 1355787 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1353763..1355787 Clostridium perfringens str. 13 989465 NP_562073.1 CDS miaA NC_003366.1 1355805 1356737 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1355805..1356737 Clostridium perfringens str. 13 989466 NP_562074.1 CDS CPE1158 NC_003366.1 1356781 1357023 D similar to gpu:AP001515_99 host factor-1 protein from Bacillus halodurans (78 aa); 66.2% identity in 68 aa overlap; RNA chaperone Hfq 1356781..1357023 Clostridium perfringens str. 13 989467 NP_562075.1 CDS CPE1159 NC_003366.1 1357128 1358408 D similar to pir:C69888 conserved hypothetical protein ynbB from Bacillus subtilis (421 aa); 53.5% identity in 398 aa overlap; aluminum resistance protein 1357128..1358408 Clostridium perfringens str. 13 989468 NP_562076.1 CDS CPE1160 NC_003366.1 1358667 1359572 D no significant homology.; hypothetical protein 1358667..1359572 Clostridium perfringens str. 13 989469 NP_562077.1 CDS lexA NC_003366.1 1359730 1360341 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(1359730..1360341) Clostridium perfringens str. 13 989470 NP_562078.1 CDS CPE1162 NC_003366.1 1360549 1360941 D no significant homology.; hypothetical protein 1360549..1360941 Clostridium perfringens str. 13 989471 NP_562079.1 CDS xerC NC_003366.1 1361032 1362384 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(1361032..1362384) Clostridium perfringens str. 13 989472 NP_562080.1 CDS CPE1164 NC_003366.1 1362882 1363100 R similar to pir:D70069 hypothetical protein ywsA from Bacillus subtilis (98 aa); 31.9% identity in 69 aa overlap; hypothetical protein complement(1362882..1363100) Clostridium perfringens str. 13 989473 NP_562081.1 CDS thd NC_003366.1 1363219 1364427 D catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 1363219..1364427 Clostridium perfringens str. 13 989474 NP_562082.1 CDS CPE1166 NC_003366.1 1364467 1365936 R similar to sp:LYSP_ECOLI LYSINE-SPECIFIC PERMEASE. from Escherichia coli (488 aa); 54.1% identity in 440 aa overlap. 11 transmembrane regions were found by PSORT.; lysine specific permease complement(1364467..1365936) Clostridium perfringens str. 13 989475 NP_562083.1 CDS CPE1167 NC_003366.1 1366440 1367660 D similar to pir:G71309 probable glutamate/ aspartate transporter from Treponema pallidum (396 aa); 30.8% identity in 347 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; glutamate/ aspartate transporter 1366440..1367660 Clostridium perfringens str. 13 989476 NP_562084.1 CDS CPE1168 NC_003366.1 1367695 1368027 R no significant homology.; hypothetical protein complement(1367695..1368027) Clostridium perfringens str. 13 989477 NP_562085.1 CDS CPE1169 NC_003366.1 1368302 1368946 D similar to sp:YYAS_BACSU HYPOTHETICAL 22.0 KDA PROTEIN IN COTF-TETB INTERGENIC REGION from Bacillus subtilis (201 aa); 24.5% identity in 204 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 1368302..1368946 Clostridium perfringens str. 13 989478 NP_562086.1 CDS CPE1170 NC_003366.1 1368979 1369197 R no significant homology.; hypothetical protein complement(1368979..1369197) Clostridium perfringens str. 13 989479 NP_562087.1 CDS CPE1171 NC_003366.1 1369260 1369643 R no significant homology.; hypothetical protein complement(1369260..1369643) Clostridium perfringens str. 13 989480 NP_562088.1 CDS CPE1172 NC_003366.1 1369976 1370710 R partially similar to sp:IMD_STRCN INHIBITION OF MORPHOLOGICAL DIFFERENTIATION PROTEIN from Streptomyces cyaneus (277 aa); 25% identity in 208 aa overlap; haloacid dehalogenase complement(1369976..1370710) Clostridium perfringens str. 13 989481 NP_562089.1 CDS CPE1173 NC_003366.1 1370990 1371418 D partially similar to pir:A71195 hypothetical protein PH1832 from Pyrococcus horikoshii (202 aa); 32.4% identity in 111 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1370990..1371418 Clostridium perfringens str. 13 989482 NP_562090.1 CDS exoA NC_003366.1 1371494 1372246 R similar to sp:EXOA_BACSU EXODEOXYRIBONUCLEASE (EC 3.1.11.2) from Bacillus subtilis (252 aa); 65.9% identity in 249 aa overlap; exodeoxyribonuclease III complement(1371494..1372246) Clostridium perfringens str. 13 989483 NP_562091.1 CDS CPE1175 NC_003366.1 1372431 1372658 D no significant homology.; hypothetical protein 1372431..1372658 Clostridium perfringens str. 13 989484 NP_562092.1 CDS CPE1176 NC_003366.1 1372966 1373388 R similar to gp:AF158628_1 hypothetical protein from Prochlorococcus PCC9511 (146 aa); 31.7% identity in 104 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein complement(1372966..1373388) Clostridium perfringens str. 13 989485 NP_562093.1 CDS pyrE NC_003366.1 1373711 1374289 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(1373711..1374289) Clostridium perfringens str. 13 989486 NP_562094.1 CDS pyrD NC_003366.1 1374440 1375339 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B complement(1374440..1375339) Clostridium perfringens str. 13 989487 NP_562095.1 CDS pyrZ NC_003366.1 1375359 1376099 R responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+); dihydroorotate dehydrogenase electron transfer subunit complement(1375359..1376099) Clostridium perfringens str. 13 989488 NP_562096.1 CDS pyrF NC_003366.1 1376124 1376987 R OMP decarboxylase; OMPDCase; OMPdecase; type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(1376124..1376987) Clostridium perfringens str. 13 989489 NP_562097.1 CDS pyrC NC_003366.1 1376997 1378196 R similar to sp:PYRC_AQUAE DIHYDROOROTASE (EC 3.5.2.3) (DHOASE) from Aquifex aeolicus (422 aa); 41.8% identity in 395 aa overlap; dihydroorotase complement(1376997..1378196) Clostridium perfringens str. 13 989490 NP_562098.1 CDS CPE1182 NC_003366.1 1378218 1378376 R no significant homology.; hypothetical protein complement(1378218..1378376) Clostridium perfringens str. 13 989491 NP_562099.1 CDS pyrB NC_003366.1 1378381 1379304 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase complement(1378381..1379304) Clostridium perfringens str. 13 989492 NP_562100.1 CDS CPE1184 NC_003366.1 1379716 1380495 R similar to pir:G75518 probable beta-lactamase from Deinococcus radiodurans (strain R1) (277 aa); 26.3% identity in 205 aa overlap; beta-lactamase complement(1379716..1380495) Clostridium perfringens str. 13 989493 NP_562101.1 CDS pfk NC_003366.1 1380727 1381827 R similar to gp:AF159501_4 Pfk1(6-phosphofructokinase) (EC 2.7.1.11) from Myxococcus xanthus (361 aa); 48.6% identity in 360 aa overlap; 6-phosphofructokinase complement(1380727..1381827) Clostridium perfringens str. 13 989494 NP_562102.1 CDS uppP NC_003366.1 1382037 1382951 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(1382037..1382951) Clostridium perfringens str. 13 989495 NP_562103.1 CDS manA NC_003366.1 1383211 1384188 R similar to pir:H69848 mannose-6-phosphate isomerase homolog yjdE from Bacillus subtilis (315 aa); 38.8% identity in 307 aa overlap. 1 transmembrane region was found by PSORT; mannose-6-phosphate isomerase complement(1383211..1384188) Clostridium perfringens str. 13 989496 NP_562104.1 CDS CPE1188 NC_003366.1 1384439 1385794 D similar to pir:T31440 UDP-N-acetylmuramyl tripeptide synthetase homolog murC from Heliobacillus mobilis (455 aa); 31.3% identity in 438 aa overlap; UDP-N-acetylmuramyl tripeptide synthetase 1384439..1385794 Clostridium perfringens str. 13 989497 NP_562105.1 CDS cobQ NC_003366.1 1385812 1386543 D similar to pir:T31439 probable cobyric acid synthase CobQ from Heliobacillus mobilis (252 aa); 48.2% identity in 228 aa overlap; CobB/CobQ family glutamine amidotransferase 1385812..1386543 Clostridium perfringens str. 13 989498 NP_562106.1 CDS CPE1190 NC_003366.1 1386523 1388070 R similar to pir:S56384 hypothetical 56.3K protein (genX-psd intergenic region) from Escherichia coli (514 aa); 52.1% identity in 484 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein complement(1386523..1388070) Clostridium perfringens str. 13 989499 NP_562107.1 CDS CPE1191 NC_003366.1 1388384 1388962 D partially similar to pir:S74741 hypothetical protein sll092 from Synechocystis sp. (strain PCC 6803) (184 aa); 39.8% identity in 103 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1388384..1388962 Clostridium perfringens str. 13 989500 NP_562108.1 CDS CPE1192 NC_003366.1 1388996 1390432 R similar to C-terminal of gp:AF049873_3 sensor protein from Lactococcus lacti (464 aa); 28% identity in 307 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; two-component sensor histidine kinase complement(1388996..1390432) Clostridium perfringens str. 13 989501 NP_562109.1 CDS CPE1193 NC_003366.1 1390419 1391096 R similar to gpu:AP001511_42 two-component response regulator from Bacillus halodurans (232 aa); 47.5% identity in 223 aa overlap; two-component response regulator complement(1390419..1391096) Clostridium perfringens str. 13 989502 NP_562110.1 CDS CPE1194 NC_003366.1 1391335 1392597 R similar to pir:D70325 hypothetical protein aq_276 from Aquifex aeolicus (458 aa); 24.6% identity in 395 aa overlap; hypothetical protein complement(1391335..1392597) Clostridium perfringens str. 13 989503 NP_562111.1 CDS CPE1195 NC_003366.1 1392606 1395620 R partially similar to pir:F70325 conserved hypothetical protein aq_278 from Aquifex aeolicus (611 aa); 34.8% identity in 581 aa overlap.Also similar to pir:A72369 (R)-2-hydroxyglutaryl-CoA dehydratase activator-related protein from Thermotoga maritima (strain MSB8); hypothetical protein complement(1392606..1395620) Clostridium perfringens str. 13 989504 NP_562112.1 CDS CPE1196 NC_003366.1 1395825 1397813 R similar to pir:C72391 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (558 aa); 47.6% identity in 572 aa overlap; hypothetical protein complement(1395825..1397813) Clostridium perfringens str. 13 989505 NP_562113.1 CDS CPE1197 NC_003366.1 1398012 1400357 R similar to pir:B71116 probable helicase PH0697 from Pyrococcus horikoshii (641 aa); 28.3% identity in 594 aa overlap. 1 transmembrane region was found by PSORT; helicase complement(1398012..1400357) Clostridium perfringens str. 13 989506 NP_562114.1 CDS CPE1198 NC_003366.1 1400459 1400833 R similar to gpu:AP001514_169 BH2163 gene product from Bacillus halodurans (464 aa); 26.1% identity in 111 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing). 3 transmembrane regions were found by PSORT.; hypothetical protein complement(1400459..1400833) Clostridium perfringens str. 13 989507 NP_562115.1 CDS CPE1199 NC_003366.1 1400875 1401852 R similar to gpu:AP001514_169 BH2163 gene product from Bacillus halodurans (464 aa); 37.9% identity in 309 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing). 8 transmembrane regions were found by PSORT.; hypothetical protein complement(1400875..1401852) Clostridium perfringens str. 13 989508 NP_562116.1 CDS CPE1200 NC_003366.1 1402014 1403120 R similar to gp:AF248951_4 MdsC protein from Prevotella sp. RS2 (362 aa); 40.4% identity in 356 aa overlap; hypothetical protein complement(1402014..1403120) Clostridium perfringens str. 13 989509 NP_562117.1 CDS CPE1201 NC_003366.1 1403122 1404039 R partially similar to pir:D64437 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) from Methanococcus jannaschii (408 aa); 27.5% identity in 229 aa overlap; hypothetical protein complement(1403122..1404039) Clostridium perfringens str. 13 989510 NP_562118.1 CDS CPE1202 NC_003366.1 1404296 1406902 D similar to pir:H69877 calcium-transporting ATPase homolog yloB from Bacillus subtilis (890 aa); 42.3% identity in 855 aa overlap. 9 transmembrane regions were found by PSORT.; calcium-transporting ATPase 1404296..1406902 Clostridium perfringens str. 13 989511 NP_562119.1 CDS spoVB NC_003366.1 1406947 1408563 R similar to gpu:AP001518_108 spore cortex protein from Bacillus halodurans (539 aa); 22.1% identity in 403 aa overlap. N-terminal signal sequence and 12 transmembrane regions were found by PSORT.; stage V sporulation protein B complement(1406947..1408563) Clostridium perfringens str. 13 989512 NP_562120.1 CDS CPE1204 NC_003366.1 1408585 1409559 R similar to pir:D72316 ribosomal large subunit pseudouridine synthase C from Thermotoga maritima (strain MSB8) (304 aa); 36.3% identity in 289 aa overlap; ribosomal large subunit pseudouridine synthase C complement(1408585..1409559) Clostridium perfringens str. 13 989513 NP_562121.1 CDS CPE1205 NC_003366.1 1409630 1410814 R similar to pir:G71097 probable amidohydrolase from Pyrococcus horikoshii (387 aa); 43.6% identity in 390 aa overlap; amidohydrolase complement(1409630..1410814) Clostridium perfringens str. 13 989514 NP_562122.1 CDS pcrA NC_003366.1 1411020 1413014 R similar to sp:PCRA_STAAU ATP-DEPENDENT HELICASE PCRA (EC 3.6.1.-) from Staphylococcus aureus (675 aa); 31.3% identity in 578 aa overlap; ATP-dependent helicase complement(1411020..1413014) Clostridium perfringens str. 13 989515 NP_562123.1 CDS CPE1207 NC_003366.1 1413167 1414639 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1413167..1414639 Clostridium perfringens str. 13 989516 NP_562124.1 CDS CPE1208 NC_003366.1 1414693 1414869 R no significant homology.; hypothetical protein complement(1414693..1414869) Clostridium perfringens str. 13 989517 NP_562125.1 CDS CPE1209 NC_003366.1 1414899 1415234 R no significant homology.; hypothetical protein complement(1414899..1415234) Clostridium perfringens str. 13 989518 NP_562126.1 CDS CPE1210 NC_003366.1 1415853 1416272 D similar to gp:AF095596_1 ferric uptake regulator homolog from Staphylococcus aureus (148 aa); 30.4% identity in 138 aa overlap; FurR family; FUR family transcriptional regulator 1415853..1416272 Clostridium perfringens str. 13 989519 NP_562127.1 CDS CPE1211 NC_003366.1 1416350 1417747 R divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV complement(1416350..1417747) Clostridium perfringens str. 13 989520 NP_562128.1 CDS uraA NC_003366.1 1417936 1419246 R similar to pir:F72329 uracil permease from Thermotoga maritima (strain MSB8) (399 aa); 52.5% identity in 413 aa overlap. 12 transmembrane regions were found by PSORT.; uracil permease complement(1417936..1419246) Clostridium perfringens str. 13 989521 NP_562129.1 CDS CPE1213 NC_003366.1 1419531 1419737 R no significant homology.; hypothetical protein complement(1419531..1419737) Clostridium perfringens str. 13 989522 NP_562130.1 CDS CPE1214 NC_003366.1 1419709 1419942 R partially similar to pir:B75463 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (142 aa); 47.8% identity in 69 aa overlap; hypothetical protein complement(1419709..1419942) Clostridium perfringens str. 13 989523 NP_562131.1 CDS CPE1215 NC_003366.1 1420122 1420595 R similar to prf:2513373E Fe uptake system:SUBUNIT=permease from Streptomyces coelicolor (271 aa); 45.6% identity in 136 aa overlap.; ATP-binding protein; ABC transporter complement(1420122..1420595) Clostridium perfringens str. 13 989524 NP_562132.1 CDS CPE1216 NC_003366.1 1420728 1420877 R no significant homology.; hypothetical protein complement(1420728..1420877) Clostridium perfringens str. 13 989525 NP_562133.1 CDS CPE1217 NC_003366.1 1420883 1421941 R similar to pir:G75619 probable hemin ABC transporter, permease from Deinococcus radiodurans (strain R1) (354 aa); 37.9% identity in 282 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; permease; ABC transporter complement(1420883..1421941) Clostridium perfringens str. 13 989526 NP_562134.1 CDS CPE1218 NC_003366.1 1422029 1423030 R similar to pir:G70046 iron-binding protein homolog yvrC from Bacillus subtilis (314 aa); 25.8% identity in 229 aa overlap; binding protein; ABC transporter complement(1422029..1423030) Clostridium perfringens str. 13 989527 NP_562135.1 CDS cbiJ NC_003366.1 1423043 1423807 R CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase complement(1423043..1423807) Clostridium perfringens str. 13 989528 NP_562136.1 CDS cbiH NC_003366.1 1423826 1424548 R catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine; precorrin-3B C(17)-methyltransferase complement(1423826..1424548) Clostridium perfringens str. 13 989529 NP_562137.1 CDS cbiG NC_003366.1 1424703 1425701 R catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG complement(1424703..1425701) Clostridium perfringens str. 13 989530 NP_562138.1 CDS cbiF NC_003366.1 1425704 1426459 R similar to pir:A64497 precorrin-3 methylase from Methanococcus jannaschii (259 aa); 54.9% identity in 244 aa overlap. 1 transmembrane region was found by PSORT; precorrin-4 C(11)-methyltransferase complement(1425704..1426459) Clostridium perfringens str. 13 989531 NP_562139.1 CDS cbiL NC_003366.1 1426510 1427172 R catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase complement(1426510..1427172) Clostridium perfringens str. 13 989532 NP_562140.1 CDS cbiT NC_003366.1 1427172 1427765 R similar to sp:CBIT_SALTY PRECORRIN-8W DECARBOXYLASE (EC 1.-.-.-) from Salmonella typhimurium (192 aa); 29.9% identity in 194 aa overlap; precorrin-6Y C5,15-methyltransferase subunit CbiT complement(1427172..1427765) Clostridium perfringens str. 13 989533 NP_562141.1 CDS cbiE NC_003366.1 1427785 1428396 R similar to sp:COBL_METJA PROBABLE PRECORRIN-6Y C5,15-METHYLTRANSFERASE [DECARBOXYLATING] (EC 2.1.1.132) (PRECORRIN-6 METHYLTRANSFERASE) (PRECORRIN-6Y METHYLASE) from Methanococcus jannaschii (211 aa); 36.6% identity in 202 aa overlap; precorrin-6y C5,15-methyltransferase (decarboxylating) complement(1427785..1428396) Clostridium perfringens str. 13 989534 NP_562142.1 CDS cbiD NC_003366.1 1428424 1429521 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(1428424..1429521) Clostridium perfringens str. 13 989535 NP_562143.1 CDS cbiC NC_003366.1 1429539 1430168 R catalyzes the interconversion of precorrin-8X and cobyrinic acid; precorrin-8X methylmutase complement(1429539..1430168) Clostridium perfringens str. 13 989536 NP_562144.1 CDS cbiK NC_003366.1 1430168 1431010 R similar to sp:CBIK_SALTY CBIK PROTEIN from Salmonella typhimurium (264 aa); 36.8% identity in 261 aa overlap; CbiK protein complement(1430168..1431010) Clostridium perfringens str. 13 989537 NP_562145.1 CDS CPE1229 NC_003366.1 1431530 1432762 D similar to prf:2015382A ORF 1 from Clostridium perfringens (80 aa); 60% identity in 75 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1431530..1432762 Clostridium perfringens str. 13 989538 NP_562146.1 CDS CPE1230 NC_003366.1 1432782 1433090 R no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(1432782..1433090) Clostridium perfringens str. 13 989539 NP_562147.1 CDS CPE1231 NC_003366.1 1433358 1436747 R similar to pir:T30290 AAS surface protein from Staphylococcus saprophyticus (1463 aa); 25.4% identity in 764 aa overlap.Also similar to pir:T30211 autolysin E from Staphylococcus epidermidis; gp:AF192767_1 enterotoxin from Bacillus cereus. N-terminal signal sequence was found by PSORT; surface protein complement(1433358..1436747) Clostridium perfringens str. 13 989540 NP_562148.1 CDS CPE1232 NC_003366.1 1437121 1438122 R no significant homology.; hypothetical protein complement(1437121..1438122) Clostridium perfringens str. 13 989541 NP_562149.1 CDS CPE1233 NC_003366.1 1438156 1438854 R no significant homology.; hypothetical protein complement(1438156..1438854) Clostridium perfringens str. 13 989542 NP_562150.1 CDS nagJ NC_003366.1 1439365 1442370 R similar to sp:NAGH_CLOPE HYALURONOGLUCOSAMINIDASE PRECURSOR (EC 3.2.1.35) (HYALURONIDASE) (MU TOXIN) from Clostridium perfringens (1042 aa); 27.2% identity in 736 aa overlap. N-terminal signal sequence was found by PSORT; mu-toxin; hyaluronidase complement(1439365..1442370) Clostridium perfringens str. 13 989543 NP_562151.1 CDS CPE1235 NC_003366.1 1442598 1443551 R partially similar to pir:T29435 hypothetical protein SC3A7.16c from Streptomyces coelicolor (1361 aa); 23.5% identity in 226 aa overlap; hypothetical protein complement(1442598..1443551) Clostridium perfringens str. 13 989544 NP_562152.1 CDS sod NC_003366.1 1443783 1444466 R similar to gp:CPSUPOXID_1 superoxide dismutase from Clostridium perfringens (227 aa); 95.6% identity in 227 aa overlap. (EC 1.15.1.1); Mn/Fe superoxide dismutase complement(1443783..1444466) Clostridium perfringens str. 13 989545 NP_562153.1 CDS CPE1237 NC_003366.1 1444528 1445139 R no significant homology. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein complement(1444528..1445139) Clostridium perfringens str. 13 989546 NP_562154.1 CDS CPE1238 NC_003366.1 1445449 1446897 D similar to pir:B69532 multidrug resistance protein homolog from Archaeoglobus fulgidus (503 aa); 31.3% identity in 400 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; multidrug resistance protein 1445449..1446897 Clostridium perfringens str. 13 989547 NP_562155.1 CDS CPE1239 NC_003366.1 1446957 1447121 R no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein complement(1446957..1447121) Clostridium perfringens str. 13 989548 NP_562156.1 CDS CPE1240 NC_003366.1 1447152 1448489 R similar to gpu:AP001508_234 magnesium (Mg2+) transporter from Bacillus halodurans (452 aa); 35% identity in 360 aa overlap. 5 transmembrane regions were found by PSORT.; magnesium transporter complement(1447152..1448489) Clostridium perfringens str. 13 989549 NP_562157.1 CDS CPE1241 NC_003366.1 1449030 1449803 R similar to prf:2316406C membrane protein from Staphylococcus gallinarum (330 aa); 32.2% identity in 242 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(1449030..1449803) Clostridium perfringens str. 13 989550 NP_562158.1 CDS cspL NC_003366.1 1450066 1450275 D similar to gp:LMCSPLGEN_1 CspL protein from Listeria monocytogenes (68 aa); 55.9% identity in 68 aa overlap; cold shock protein 1450066..1450275 Clostridium perfringens str. 13 989551 NP_562159.1 CDS CPE1243 NC_003366.1 1450428 1450634 R no significant homology.; hypothetical protein complement(1450428..1450634) Clostridium perfringens str. 13 989552 NP_562160.1 CDS CPE1244 NC_003366.1 1450681 1451151 R similar to pir:A69760 conserved hypothetical protein yciB from Bacillus subtilis (194 aa); 35.3% identity in 116 aa overlap; hypothetical protein complement(1450681..1451151) Clostridium perfringens str. 13 989553 NP_562161.1 CDS CPE1245 NC_003366.1 1451269 1452240 R similar to sp:YULF_BACSU HYPOTHETICAL 36.5 KDA PROTEIN IN GBSA-TLPB INTERGENIC REGION from Bacillus subtilis (328 aa); 28.4% identity in 320 aa overlap; hypothetical protein complement(1451269..1452240) Clostridium perfringens str. 13 989554 NP_562162.1 CDS CPE1246 NC_003366.1 1452414 1452662 D no significant homology. 2 transmembrane regions were found by PSORT.; hypothetical protein 1452414..1452662 Clostridium perfringens str. 13 989555 NP_562163.1 CDS CPE1247 NC_003366.1 1452739 1455294 R similar to gp:D85082_8 YfiX from Bacillus subtilis (610 aa); 36.1% identity in 581 aa overlap. N-terminal signal sequence and 13 transmembrane regions were found by PSORT.; hypothetical protein complement(1452739..1455294) Clostridium perfringens str. 13 989556 NP_562164.1 CDS CPE1248 NC_003366.1 1455868 1456806 R similar to pir:A69805 hypothetical protein yfiW from Bacillus subtilis (258 aa); 31.8% identity in 195 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein complement(1455868..1456806) Clostridium perfringens str. 13 989557 NP_562165.1 CDS CPE1249 NC_003366.1 1456945 1457436 R no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein complement(1456945..1457436) Clostridium perfringens str. 13 989558 NP_562166.1 CDS CPE1250 NC_003366.1 1457655 1458872 R partially similar to pir:A64465 hypothetical protein MJ1322 from Methanococcus jannaschii (1005 aa); 25.8% identity in 411 aa overlap; hypothetical protein complement(1457655..1458872) Clostridium perfringens str. 13 989559 NP_562167.1 CDS CPE1251 NC_003366.1 1458882 1459865 R partially similar to pir:B70356 chromosome assembly protein homolog from Aquifex aeolicus (1156 aa); 23% identity in 291 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein complement(1458882..1459865) Clostridium perfringens str. 13 989560 NP_562168.1 CDS CPE1252 NC_003366.1 1460384 1461106 R similar to gpu:AE004082_1 conserved hypothetical protei from Xylella fastidiosa (253 aa); 39.7% identity in 234 aa overlap. 7 transmembrane regions were found by PSORT.; hypothetical protein complement(1460384..1461106) Clostridium perfringens str. 13 989561 NP_562169.1 CDS CPE1253 NC_003366.1 1461286 1461624 R no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein complement(1461286..1461624) Clostridium perfringens str. 13 989562 NP_562170.1 CDS gltB NC_003366.1 1461651 1463057 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase complement(1461651..1463057) Clostridium perfringens str. 13 989563 NP_562171.1 CDS hydG NC_003366.1 1463050 1463949 R similar to pir:F75069 hydrogenase, chain gamma related protein PAB1737 from Pyrococcus abyssi (strain Orsay) (278 aa); 51.5% identity in 272 aa overlap. 1 transmembrane region was found by PSORT; ferredoxin-NADP reductase complement(1463050..1463949) Clostridium perfringens str. 13 989564 NP_562172.1 CDS bdhB NC_003366.1 1464100 1465266 R similar to sp:ADH1_CLOAB NADPH-DEPENDENT BUTANOL DEHYDROGENASE (EC 1.1.1.-) (BDH) from Clostridium acetobutylicum (388 aa); 69.6% identity in 388 aa overlap; NADPH-dependent butanol dehydrogenase complement(1464100..1465266) Clostridium perfringens str. 13 989565 NP_562173.1 CDS CPE1257 NC_003366.1 1465378 1466829 R similar to gpu:AP001509_234 BH0796 gene product from Bacillus halodurans (500 aa); 43.6% identity in 459 aa overlap; hypothetical protein complement(1465378..1466829) Clostridium perfringens str. 13 989566 NP_562174.1 CDS entA NC_003366.1 1467436 1470303 D similar to gp:AF192766_1 enterotoxin from Bacillus cereus (419 aa); 23.2% identity in 224 aa overlap; enterotoxin 1467436..1470303 Clostridium perfringens str. 13 989567 NP_562175.1 CDS CPE1259 NC_003366.1 1470518 1471432 R partially similar to gp:AF102543_8 unknown from Zymomonas mobilis (318 aa); 40.8% identity in 120 aa overlap; hypothetical protein complement(1470518..1471432) Clostridium perfringens str. 13 989568 NP_562176.1 CDS CPE1260 NC_003366.1 1471730 1472500 R similar to prf:2408488H ORF 142 from Streptococcus thermophilus phage TP-J34 (142 aa); 42.5% identity in 120 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein complement(1471730..1472500) Clostridium perfringens str. 13 989569 NP_562177.1 CDS CPE1261 NC_003366.1 1472753 1473373 R no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein complement(1472753..1473373) Clostridium perfringens str. 13 989570 NP_562178.1 CDS CPE1262 NC_003366.1 1473706 1473876 D no significant homology.; hypothetical protein 1473706..1473876 Clostridium perfringens str. 13 989571 NP_562179.1 CDS greA NC_003366.1 1474429 1474893 D similar to sp:GREA_RHIME TRANSCRIPTION ELONGATION FACTOR GREA (TRANSCRIPT CLEAVAGE FACTOR GREA) from Sinorhizobium meliloti (158 aa); 29.5% identity in 149 aa overlap; transcription elongation factor GreA 1474429..1474893 Clostridium perfringens str. 13 989572 NP_562180.1 CDS CPE1264 NC_003366.1 1475202 1479968 R partially similar to sp:NANH_MICVI SIALIDASE PRECURSOR (EC 3.2.1.18) (NEURAMINIDASE) from Micromonospora viridifaciens (647 aa); 36.1% identity in 119 aa overlap. N-terminal signal sequence was found by PSORT; sialidase-like protein complement(1475202..1479968) Clostridium perfringens str. 13 989573 NP_562181.1 CDS CPE1265 NC_003366.1 1480226 1481989 D no significant homology.; hypothetical protein 1480226..1481989 Clostridium perfringens str. 13 989574 NP_562182.1 CDS CPE1266 NC_003366.1 1482112 1486179 R similar to gpu:AF282987_1 beta-galactosidase precursor from Streptococcus pneumoniae (2233 aa); 42.9% identity in 907 aa overlap. N-terminal signal sequence was found by PSORT; beta-galactosidase complement(1482112..1486179) Clostridium perfringens str. 13 989575 NP_562183.1 CDS CPE1267 NC_003366.1 1486429 1487763 R similar to sp:YF05_METTH HYPOTHETICAL PROTEIN MTH1505 from Methanobacterium thermoautotrophicum (427 aa); 36.7% identity in 379 aa overlap; hypothetical protein complement(1486429..1487763) Clostridium perfringens str. 13 989576 NP_562184.1 CDS adeC NC_003366.1 1487900 1489618 R similar to sp:ADEC_METTH PROBABLE ADENINE DEAMINASE (EC 3.5.4.2) (ADENASE) (ADENINE AMINASE). from Methanobacterium thermoautotrophicum (strain Delta H) (538 aa); 34.7% identity in 513 aa overlap; adenine deaminase complement(1487900..1489618) Clostridium perfringens str. 13 989577 NP_562185.1 CDS CPE1269 NC_003366.1 1489634 1490680 R similar to pir:H64117 spermidine/putrescine-binding protein 1 precursor HI1344 from Haemophilus influenzae (strain Rd KW20) (379 aa); 27.2% identity in 298 aa overlap; spermidine/putrescine-binding protein 1 complement(1489634..1490680) Clostridium perfringens str. 13 989578 NP_562186.1 CDS CPE1270 NC_003366.1 1490720 1491751 R similar to gpu:AB039932_2 riorf36 gene product from Agrobacterium rhizogenes (352 aa); 42.9% identity in 280 aa overlap. 1 transmembrane region was found by PSORT; ATP-binding protein; ABC transporter complement(1490720..1491751) Clostridium perfringens str. 13 989579 NP_562187.1 CDS CPE1271 NC_003366.1 1491787 1492569 R similar to gp:BLLAMLCHA_1 inner membrane protein from Bacillus licheniformis (270 aa); 37.1% identity in 245 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permease; ABC transporter complement(1491787..1492569) Clostridium perfringens str. 13 989580 NP_562188.1 CDS CPE1272 NC_003366.1 1492571 1492909 R partially similar to prf:2220324B attA2 gene from Agrobacterium tumefaciens (300 aa); 42.9% identity in 112 aa overlap.Also partially similar to many ABC transporter proteins (permease). 2 transmembrane regions were found by PSORT.; hypothetical protein complement(1492571..1492909) Clostridium perfringens str. 13 989581 NP_562189.1 CDS CPE1273 NC_003366.1 1493064 1493399 R partially similar to gpu:AB039932_1 riorf35 gene product from Agrobacterium rhizogenes (283 aa); 34% identity in 103 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(1493064..1493399) Clostridium perfringens str. 13 989582 NP_562190.1 CDS CPE1274 NC_003366.1 1493787 1494935 R partially similar to sp:FLIB_SALTY LYSINE-N-METHYLASE (EC 2.1.1.-) (LYSINE N-METHYLTRANSFERASE) from Salmonella typhimurium (401 aa); 21.8% identity in 394 aa overlap. 1 transmembrane region was found by PSORT; lysine-N-methylase complement(1493787..1494935) Clostridium perfringens str. 13 989583 NP_562191.1 CDS CPE1275 NC_003366.1 1495134 1496099 R similar to pir:C81429 probable transcription regulator Cj0123c from Campylobacter jejuni (strain NCTC 11168) (308 aa); 29% identity in 252 aa overlap; dihydrouridine synthase complement(1495134..1496099) Clostridium perfringens str. 13 989584 NP_562192.1 CDS CPE1276 NC_003366.1 1496203 1497573 R similar to gpu:AP001514_169 BH2163 gene product from Bacillus halodurans (464 aa); 33.2% identity in 422 aa overlap; hypothetical protein complement(1496203..1497573) Clostridium perfringens str. 13 989585 NP_562193.1 CDS CPE1277 NC_003366.1 1497946 1498287 R similar to gp:LSEXOGC_3 L.sake gene cluster from Lactobacillus sakei (117 aa); 50% identity in 88 aa overlap. 10 transmembrane regions were found by PSORT.; hypothetical protein complement(1497946..1498287) Clostridium perfringens str. 13 989586 NP_562194.1 CDS CPE1278 NC_003366.1 1498299 1500215 R similar to gp:LSEXOGC_2 L.sake gene cluster from Lactobacillus sakei (645 aa); 61.4% identity in 573 aa overlap. 16 transmembrane regions were found by PSORT.; oligopeptide transporter complement(1498299..1500215) Clostridium perfringens str. 13 989587 NP_562195.1 CDS nagK NC_003366.1 1500861 1504352 R similar to sp:NAGH_CLOPE HYALURONOGLUCOSAMINIDASE PRECURSOR (EC 3.2.1.35) (HYALURONIDASE) (MU TOXIN) from Clostridium perfringens (1042 aa); 37.8% identity in 874 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; mu-toxin; hyaluronidase complement(1500861..1504352) Clostridium perfringens str. 13 989588 NP_562196.1 CDS CPE1280 NC_003366.1 1504584 1504736 R no significant homology.; hypothetical protein complement(1504584..1504736) Clostridium perfringens str. 13 989589 NP_562197.1 CDS CPE1281 NC_003366.1 1505003 1510066 R partially similar to pir:T36472 probable secreted alpha-galactosidase from Streptomyces coelicolor (680 aa); 33.6% identity in 140 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(1505003..1510066) Clostridium perfringens str. 13 989590 NP_562198.1 CDS CPE1282 NC_003366.1 1510515 1511903 R similar to prf:2516401T transmembrane protein from Bacillus cereus (441 aa); 25.5% identity in 377 aa overlap. 13 transmembrane regions were found by PSORT.; transmembrane protein complement(1510515..1511903) Clostridium perfringens str. 13 989591 NP_562199.1 CDS CPE1283 NC_003366.1 1512322 1513071 D similar to gpu:AP001515_128 transcriptional regulator (GntR family) from Bacillus halodurans (242 aa); 24.9% identity in 229 aa overlap; GntR family; transcriptional regulator 1512322..1513071 Clostridium perfringens str. 13 989592 NP_562200.1 CDS CPE1284 NC_003366.1 1513189 1514370 R similar to gp:D45912_25 pyrimidine nucleoside transport protein from Bacillus subtilis (393 aa); 71.7% identity in 392 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; pyrimidine nucleoside transporter complement(1513189..1514370) Clostridium perfringens str. 13 989593 NP_562201.1 CDS CPE1285 NC_003366.1 1514831 1515928 R no significant homology.; peptidase, S41 family complement(1514831..1515928) Clostridium perfringens str. 13 989594 NP_562202.1 CDS CPE1286 NC_003366.1 1516256 1516708 D similar to gpu:AE004385_4 conserved hypothetical protein from Vibrio cholerae (170 aa); 43.8% identity in 144 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1516256..1516708 Clostridium perfringens str. 13 989595 NP_562203.1 CDS CPE1287 NC_003366.1 1516999 1519614 R partially similar to pir:C72285 hypothetical protein from Thermotoga maritima (strain MSB8) (718 aa); 22.8% identity in 487 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein complement(1516999..1519614) Clostridium perfringens str. 13 989596 NP_562204.1 CDS CPE1288 NC_003366.1 1520263 1521327 R partially similar to gp:HC11504_1 DNA-polymerase from Hebeloma circinans (858 aa); 23.8% identity in 336 aa overlap; hypothetical protein complement(1520263..1521327) Clostridium perfringens str. 13 989597 NP_562205.1 CDS CPE1289 NC_003366.1 1521612 1523180 R partially similar to pir:H81403 hypothetical protein Cj0569 from Campylobacter jejuni (strain NCTC 11168) (289 aa); 43.8% identity in 272 aa overlap. 2 transmembrane regions were found by PSORT.; hypothetical protein complement(1521612..1523180) Clostridium perfringens str. 13 989598 NP_562206.1 CDS CPE1290 NC_003366.1 1523220 1524911 R similar to pir:E81403 hypothetical protein Cj0566 from Campylobacter jejuni (strain NCTC 11168) (488 aa); 22.4% identity in 504 aa overlap. 2 transmembrane regions were found by PSORT.; hypothetical protein complement(1523220..1524911) Clostridium perfringens str. 13 989599 NP_562207.1 CDS CPE1291 NC_003366.1 1525991 1526173 R no significant homology.; hypothetical protein complement(1525991..1526173) Clostridium perfringens str. 13 989600 NP_562208.1 CDS xpt NC_003366.1 1526730 1527308 R Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase complement(1526730..1527308) Clostridium perfringens str. 13 989601 NP_562209.1 CDS CPE1293 NC_003366.1 1527481 1528470 D similar to pir:F69210 conserved hypothetical protein MTH83 from Methanobacterium thermoautotrophicum (strain Delta H) (379 aa); 30.9% identity in 223 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1527481..1528470 Clostridium perfringens str. 13 989602 NP_562210.1 CDS CPE1294 NC_003366.1 1528817 1529425 R partially similar to pir:G36891 transfer complex protein TrsF from Staphylococcus aureus (426 aa); 28.7% identity in 108 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(1528817..1529425) Clostridium perfringens str. 13 989603 NP_562211.1 CDS smpB NC_003366.1 1529901 1530371 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1529901..1530371) Clostridium perfringens str. 13 989604 NP_562212.1 CDS rnr NC_003366.1 1530963 1533218 R similar to sp:RNR_BACSU RIBONUCLEASE R (EC 3.1.-.-) (RNASE R) (VACB PROTEIN HOMOLOG) from Bacillus subtilis (779 aa); 52.8% identity in 703 aa overlap; ribonuclease R complement(1530963..1533218) Clostridium perfringens str. 13 989605 NP_562213.1 CDS secG NC_003366.1 1533451 1533681 R similar to sp:SECG_BACSU PROBABLE PROTEIN-EXPORT MEMBRANE PROTEIN SECG from Bacillus subtilis (76 aa); 30.6% identity in 72 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; preprotein translocase subunit SecG complement(1533451..1533681) Clostridium perfringens str. 13 989606 NP_562214.1 CDS CPE1298 NC_003366.1 1533885 1534433 R similar to pir:A69818 hypothetical protein yhaG from Bacillus subtilis (172 aa); 40.3% identity in 176 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein complement(1533885..1534433) Clostridium perfringens str. 13 989607 NP_562215.1 CDS eno NC_003366.1 1535696 1536991 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(1535696..1536991) Clostridium perfringens str. 13 989608 NP_562216.1 CDS CPE1300 NC_003366.1 1537694 1539151 R similar to prf:2408418B gadC gene from Lactococcus lactis (503 aa); 58.1% identity in 475 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; extreme acid sensitivity protein; amino acid antiporter complement(1537694..1539151) Clostridium perfringens str. 13 989609 NP_562217.1 CDS pgm NC_003366.1 1539718 1541256 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(1539718..1541256) Clostridium perfringens str. 13 989610 NP_562218.1 CDS tpiA NC_003366.1 1541381 1542127 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(1541381..1542127) Clostridium perfringens str. 13 989611 NP_562219.1 CDS pgk NC_003366.1 1542371 1543564 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(1542371..1543564) Clostridium perfringens str. 13 989612 NP_562220.1 CDS gapC NC_003366.1 1543708 1544706 R similar to gp:AF043386_2 glyceraldehyde-3-phosphate dehydrogenase from Clostridium acetobutylicum (334 aa); 78.8% identity in 326 aa overlap. (EC 1.2.1.12); glyceraldehyde-3-phosphate dehydrogenase, type I complement(1543708..1544706) Clostridium perfringens str. 13 989613 NP_562221.1 CDS CPE1305 NC_003366.1 1544797 1545876 R similar to gp:AF043386_1 unknown from Clostridium acetobutylicum (276 aa); 45.6% identity in 272 aa overlap; SorC family; transcriptional regulator complement(1544797..1545876) Clostridium perfringens str. 13 989614 NP_562222.1 CDS sigL NC_003366.1 1546057 1547442 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(1546057..1547442) Clostridium perfringens str. 13 989615 NP_562223.1 CDS CPE1307 NC_003366.1 1547694 1548461 R similar to gpu:AP001510_28 BH0853 gene product from Bacillus halodurans (227 aa); 36.8% identity in 209 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein complement(1547694..1548461) Clostridium perfringens str. 13 989616 NP_562224.1 CDS CPE1308 NC_003366.1 1548448 1548957 R no significant homology. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein complement(1548448..1548957) Clostridium perfringens str. 13 989617 NP_562225.1 CDS CPE1309 NC_003366.1 1549560 1550630 R similar to prf:2501364A surface protein from Listeria monocytogenes (357 aa); 36.3% identity in 336 aa overlap; hypothetical protein complement(1549560..1550630) Clostridium perfringens str. 13 989618 NP_562226.1 CDS CPE1310 NC_003366.1 1550721 1551560 R similar to prf:2509371A grrY gene:SUBUNIT=selenoprotein B from Eubacterium acidaminophilum (280 aa); 32.4% identity in 275 aa overlap. 2 transmembrane regions were found by PSORT.; degV family protein complement(1550721..1551560) Clostridium perfringens str. 13 989619 NP_562227.1 CDS CPE1311 NC_003366.1 1551575 1552036 R similar to prf:2217197C ORF from Bacillus circulans alkalophilus (144 aa); 41.8% identity in 141 aa overlap. Also similar to many rRNA methylases; hypothetical protein complement(1551575..1552036) Clostridium perfringens str. 13 989620 NP_562228.1 CDS CPE1312 NC_003366.1 1552125 1552958 R similar to sp:YXEH_BACSU HYPOTHETICAL 30.2 KDA PROTEIN IN IDH-DEOR INTERGENIC REGION from Bacillus subtilis (270 aa); 35.3% identity in 272 aa overlap; HAD hydrolase complement(1552125..1552958) Clostridium perfringens str. 13 989621 NP_562229.1 CDS CPE1313 NC_003366.1 1553118 1554680 R partially similar to gpu:AP001512_183 BH1596 gene product from Bacillus halodurans (305 aa); 34.7% identity in 248 aa overlap. N-terminal signal sequence was found by PSORT; von Willebrand factor A complement(1553118..1554680) Clostridium perfringens str. 13 989622 NP_562230.1 CDS CPE1314 NC_003366.1 1554845 1555810 R similar to prf:2313244A muramidase from Clostridium perfringens (321 aa); 100% identity in 321 aa overlap; cortical fragment-lytic enzyme; muramidase complement(1554845..1555810) Clostridium perfringens str. 13 989623 NP_562231.1 CDS ddl NC_003366.1 1555884 1556789 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(1555884..1556789) Clostridium perfringens str. 13 989624 NP_562232.1 CDS CPE1316 NC_003366.1 1556909 1559374 R similar to gpu:AP001512_168 two-component sensor histidine kinase from Bacillus halodurans (594 aa); 29.2% identity in 363 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; two-component sensor histidine kinase complement(1556909..1559374) Clostridium perfringens str. 13 989625 NP_562233.1 CDS CPE1317 NC_003366.1 1559474 1560337 D similar to pir:B71256 conserved hypothetical integral membrane protein TP0986 from Treponema pallidum (294 aa); 40% identity in 275 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; hypothetical protein 1559474..1560337 Clostridium perfringens str. 13 989626 NP_562234.1 CDS CPE1318 NC_003366.1 1560366 1560995 R similar to gpu:AP001512_285 endonuclease III (DNA repair) from Bacillus halodurans (218 aa); 49.8% identity in 203 aa overlap; endonuclease III complement(1560366..1560995) Clostridium perfringens str. 13 989627 NP_562235.1 CDS CPE1319 NC_003366.1 1561007 1561711 R similar to prf:2403377A sn-glycerol-3-phosphate acyltransferase from Clostridium butyricum (234 aa); 57.1% identity in 233 aa overlap; acyltransferase complement(1561007..1561711) Clostridium perfringens str. 13 989628 NP_562236.1 CDS CPE1320 NC_003366.1 1561749 1562741 R similar to gpu:AP001510_195 BH1020 gene product from Bacillus halodurans (391 aa); 32.7% identity in 297 aa overlap; hypothetical protein complement(1561749..1562741) Clostridium perfringens str. 13 989629 NP_562237.1 CDS cysE NC_003366.1 1562886 1563395 R similar to sp:CYSE_HELPY SERINE ACETYLTRANSFERASE (EC 2.3.1.30) (SAT) from Helicobacter pylori (strain 26695) (171 aa); 69.1% identity in 162 aa overlap. 1 transmembrane region was found by PSORT; serine O-acetyltransferase complement(1562886..1563395) Clostridium perfringens str. 13 989630 NP_562238.1 CDS cysK NC_003366.1 1563414 1564316 R similar to gp:CST130879_2 o-acetylserine sulfhydrylase from Clostridium sticklandii (304 aa); 50.8% identity in 299 aa overlap; cysteine synthase; cysteine synthase A complement(1563414..1564316) Clostridium perfringens str. 13 989631 NP_562239.1 CDS CPE1323 NC_003366.1 1564655 1565926 R partially similar to gpu:AP001508_234 magnesium (Mg2+) transporter from Bacillus halodurans (452 aa); 29.6% identity in 226 aa overlap; hypothetical protein complement(1564655..1565926) Clostridium perfringens str. 13 989632 NP_562240.1 CDS CPE1324 NC_003366.1 1566266 1567054 D similar to gp:AF086736_1 amino acid-binding protein Abp from Streptococcus uberis (277 aa); 41.5% identity in 234 aa overlap; binding protein; amino acid ABC transporter 1566266..1567054 Clostridium perfringens str. 13 989633 NP_562241.1 CDS CPE1325 NC_003366.1 1567068 1567709 D similar to pir:S77250 hypothetical protein from Synechocystis sp. (strain PCC 6803 (530 aa); 42.4% identity in 172 aa overlap. 3 transmembrane regions were found by PSORT.; permease; amino acid ABC transporter 1567068..1567709 Clostridium perfringens str. 13 989634 NP_562242.1 CDS CPE1326 NC_003366.1 1567721 1568413 D similar to pir:F71849 amino acid ABC transporter, ATP-binding protei from Helicobacter pylori (strain J99) (248 aa); 43.7% identity in 229 aa overlap; ATP-binding protein; amino acid ABC transporter 1567721..1568413 Clostridium perfringens str. 13 989635 NP_562243.1 CDS CPE1327 NC_003366.1 1568585 1569265 R no significant homology. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; hypothetical protein complement(1568585..1569265) Clostridium perfringens str. 13 989636 NP_562244.1 CDS CPE1328 NC_003366.1 1569338 1570219 R similar to YegS from E. coli; lipid kinase complement(1569338..1570219) Clostridium perfringens str. 13 989637 NP_562245.1 CDS CPE1329 NC_003366.1 1570535 1571056 D similar to gpu:AP001511_199 phosphatidylserine synthase from Bacillus halodurans (179 aa); 38.2% identity in 170 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; CDP-diacylglycerol--serine O-phosphatidyltransferase 1570535..1571056 Clostridium perfringens str. 13 989638 NP_562246.1 CDS CPE1330 NC_003366.1 1571103 1571453 R no significant homology.; hypothetical protein complement(1571103..1571453) Clostridium perfringens str. 13 989639 NP_562247.1 CDS rubY NC_003366.1 1571475 1572011 R similar to sp:RUBY_DESVH RUBRERYTHRIN from Desulfovibrio vulgaris (191 aa); 45.1% identity in 175 aa overlap; rubrerythrin complement(1571475..1572011) Clostridium perfringens str. 13 989640 NP_562248.1 CDS spoVR NC_003366.1 1572063 1573412 R similar to sp:SP5R_BACSU STAGE V SPORULATION PROTEIN R from Bacillus subtilis (468 aa); 40.6% identity in 443 aa overlap; stage V sporulation protein R complement(1572063..1573412) Clostridium perfringens str. 13 989641 NP_562249.1 CDS CPE1333 NC_003366.1 1573439 1574617 R similar to gpu:AP001510_206 BH1031 gene product from Bacillus halodurans (388 aa); 38.5% identity in 377 aa overlap; hypothetical protein complement(1573439..1574617) Clostridium perfringens str. 13 989642 NP_562250.1 CDS prkA NC_003366.1 1574621 1576543 R similar to sp:PRKA_BACSU PRKA PROTEIN from Bacillus subtilis (631 aa); 39.2% identity in 637 aa overlap; serine protein kinase complement(1574621..1576543) Clostridium perfringens str. 13 989643 NP_562251.1 CDS recQ NC_003366.1 1576633 1578411 R similar to pir:F69901 DNA helicase recQ from Bacillus subtilis (591 aa); 38% identity in 587 aa overlap; ATP-dependent DNA helicase RecQ complement(1576633..1578411) Clostridium perfringens str. 13 989644 NP_562252.1 CDS thiE NC_003366.1 1578642 1579265 R Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase complement(1578642..1579265) Clostridium perfringens str. 13 989645 NP_562253.1 CDS thiM NC_003366.1 1579258 1580055 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(1579258..1580055) Clostridium perfringens str. 13 989646 NP_562254.1 CDS thiD NC_003366.1 1580067 1580861 R similar to gpu:AP001512_22 phosphomethylpyrimidine kinase from Bacillus halodurans (270 aa); 45.8% identity in 262 aa overlap; phosphomethylpyrimidine kinase complement(1580067..1580861) Clostridium perfringens str. 13 989647 NP_562255.1 CDS CPE1339 NC_003366.1 1581169 1582008 D partially similar to gpu:AE004275_8 conserved hypothetical protein from Vibrio cholerae (389 aa); 32.3% identity in 167 aa overlap; hypothetical protein 1581169..1582008 Clostridium perfringens str. 13 989648 NP_562256.1 CDS CPE1340 NC_003366.1 1582126 1583139 R similar to gpu:AP001514_233 transcriptional regulator (AraC/XylS family) from Bacillus halodurans (347 aa); 41.7% identity in 333 aa overlap; AraC/XylS family; LacI family transcriptional regulator complement(1582126..1583139) Clostridium perfringens str. 13 989649 NP_562257.1 CDS CPE1341 NC_003366.1 1583357 1584421 D similar to gpu:AE004212_7 galactoside ABC transporter, periplasmic D-galactose/D-glucose-binding protein from Vibrio cholerae (324 aa); 60.4% identity in 303 aa overlap; D-galactose/D-glucose-binding protein; galactoside ABC transporter 1583357..1584421 Clostridium perfringens str. 13 989650 NP_562258.1 CDS CPE1342 NC_003366.1 1584496 1586043 D with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein 1584496..1586043 Clostridium perfringens str. 13 989651 NP_562259.1 CDS mglC NC_003366.1 1586015 1587043 D ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane protein 1586015..1587043 Clostridium perfringens str. 13 989652 NP_562260.1 CDS CPE1344 NC_003366.1 1587084 1588106 R similar to gpu:AP001516_184 aldose 1-epimerase (EC 5.1.3.3) from Bacillus halodurans (348 aa); 38.8% identity in 335 aa overlap; aldose 1-epimerase complement(1587084..1588106) Clostridium perfringens str. 13 989653 NP_562261.1 CDS galK NC_003366.1 1588332 1589495 D catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 1588332..1589495 Clostridium perfringens str. 13 989654 NP_562262.1 CDS galT NC_003366.1 1589618 1591114 D catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 1589618..1591114 Clostridium perfringens str. 13 989655 NP_562263.1 CDS CPE1347 NC_003366.1 1591305 1592969 R similar to pir:B72341 uridine kinase-related protein from Thermotoga maritima (strain MSB8) (555 aa); 42.9% identity in 546 aa overlap; uridine kinase complement(1591305..1592969) Clostridium perfringens str. 13 989656 NP_562264.1 CDS CPE1348 NC_003366.1 1593091 1593789 D similar to gpu:AP001511_121 BH1232 gene product from Bacillus halodurans (218 aa); 31.4% identity in 220 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1593091..1593789 Clostridium perfringens str. 13 989657 NP_562265.1 CDS CPE1349 NC_003366.1 1593786 1594220 D no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1593786..1594220 Clostridium perfringens str. 13 989658 NP_562266.1 CDS alf2 NC_003366.1 1594317 1595183 D similar to sp:ALF_MYCPN FRUCTOSE-BISPHOSPHATE ALDOLASE (EC 4.1.2.13) from Mycoplasma pneumoniae (strain ATCC 29342) (288 aa); 55.2% identity in 286 aa overlap; fructose-1,6-bisphosphate aldolase 1594317..1595183 Clostridium perfringens str. 13 989659 NP_562267.1 CDS CPE1351 NC_003366.1 1595230 1596273 R C-terminal portion is similar to gp:CST130879_1 hypothetical protein from Clostridium sticklandii (95 aa); 38.7% identity in 62 aa overlap; hypothetical protein complement(1595230..1596273) Clostridium perfringens str. 13 989660 NP_562268.1 CDS CPE1352 NC_003366.1 1596413 1596976 D similar to sp:Y240_METJA HYPOTHETICAL PROTEIN MJ0240 from Methanococcus jannaschii (175 aa); 31.9% identity in 182 aa overlap; hypothetical protein 1596413..1596976 Clostridium perfringens str. 13 989661 NP_562269.1 CDS CPE1353 NC_003366.1 1597424 1597828 R no significant homology; hypothetical protein complement(1597424..1597828) Clostridium perfringens str. 13 989662 NP_562270.1 CDS entB NC_003366.1 1597967 1599616 R similar to gp:AF192766_1 enterotoxin from Bacillus cereus (419 aa); 23.7% identity in 375 aa overlap. N-terminal signal sequence was found by PSORT; enterotoxin complement(1597967..1599616) Clostridium perfringens str. 13 989663 NP_562271.1 CDS CPE1355 NC_003366.1 1599782 1600150 R no significant homology; hypothetical protein complement(1599782..1600150) Clostridium perfringens str. 13 989664 NP_562272.1 CDS CPE1356 NC_003366.1 1600338 1600724 D no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 1600338..1600724 Clostridium perfringens str. 13 989665 NP_562273.1 CDS CPE1357 NC_003366.1 1600850 1601335 R similar to pir:D69849 transcription regulation homolog yjdI from Bacillus subtilis (159 aa); 56.9% identity in 160 aa overlap; ybaK/ebsC protein complement(1600850..1601335) Clostridium perfringens str. 13 989666 NP_562274.1 CDS CPE1358 NC_003366.1 1601922 1603226 R partially similar to pir:G71602 protein with DnaJ domain (RESA-like) PFB0925w from Plasmodium falciparum (657 aa); 26.1% identity in 157 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein complement(1601922..1603226) Clostridium perfringens str. 13 989667 NP_562275.1 CDS CPE1359 NC_003366.1 1603308 1603748 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(1603308..1603748) Clostridium perfringens str. 13 989668 NP_562276.1 CDS CPE1360 NC_003366.1 1603772 1604158 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(1603772..1604158) Clostridium perfringens str. 13 989669 NP_562277.1 CDS CPE1361 NC_003366.1 1604254 1605129 R partially similar to sp:YPIX_CLOPE HYPOTHETICAL 38.4 KDA PROTEIN (ORF10) from Clostridium perfringens plasmid pIP404 (342 aa); 60.4% identity in 144 aa overlap; hypothetical protein complement(1604254..1605129) Clostridium perfringens str. 13 989670 NP_562278.1 CDS CPE1362 NC_003366.1 1605491 1606051 R partially similar to pir:B69424 conserved hypothetical protein AF1395 from Archaeoglobus fulgidus (323 aa); 24.6% identity in 183 aa overlap; hypothetical protein complement(1605491..1606051) Clostridium perfringens str. 13 989671 NP_562279.1 CDS CPE1363 NC_003366.1 1606130 1607080 R member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z complement(1606130..1607080) Clostridium perfringens str. 13 989672 NP_562280.1 CDS CPE1364 NC_003366.1 1607193 1611608 R partially similar to gp:SSU40488_1 lacto-N-biosidase precursor from Streptomyces sp (639 aa); 26.6% identity in 482 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(1607193..1611608) Clostridium perfringens str. 13 989673 NP_562281.1 CDS CPE1365 NC_003366.1 1611842 1612468 D similar to pir:E71247 hypothetical protein PH0236 from Pyrococcus horikoshii (205 aa); 27.6% identity in 163 aa overlap; hypothetical protein 1611842..1612468 Clostridium perfringens str. 13 989674 NP_562282.1 CDS CPE1366 NC_003366.1 1612521 1613273 R similar to pir:H64478 hypothetical protein MJ1433 from Methanococcus jannaschii (247 aa); 35.8% identity in 218 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein complement(1612521..1613273) Clostridium perfringens str. 13 989675 NP_562283.1 CDS CPE1367 NC_003366.1 1613365 1614513 R partially similar to pir:T37180 probable membrane protein from Streptomyces coelicolor (513 aa); 23.5% identity in 315 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; hypothetical protein complement(1613365..1614513) Clostridium perfringens str. 13 989676 NP_562284.1 CDS CPE1368 NC_003366.1 1614594 1619726 R similar to pir:H72357 hypothetical protein TM0599 from Thermotoga maritima (strain MSB8 (546 aa); 30.2% identity in 533 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein complement(1614594..1619726) Clostridium perfringens str. 13 989677 NP_562285.1 CDS CPE1369 NC_003366.1 1619964 1620467 R similar to pir:G81269 probable acetyltransferase Cj1715 from Campylobacter jejuni (strain NCTC 11168) (176 aa); 28.4% identity in 155 aa overlap; GNAT family acetyltransferase complement(1619964..1620467) Clostridium perfringens str. 13 989678 NP_562286.1 CDS hisB NC_003366.1 1620776 1621555 D similar to pir:F75515 probable histidinol phosphatase from Deinococcus radiodurans (strain R1) (260 aa); 24.3% identity in 226 aa overlap; histidinol phosphatase 1620776..1621555 Clostridium perfringens str. 13 989679 NP_562287.1 CDS CPE1371 NC_003366.1 1621905 1623218 D similar to pir:C71376 probable sodium- and chloride- dependent transporter from Treponema pallidum (443 aa); 36.6% identity in 328 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; sodium- and chloride- dependent transporter 1621905..1623218 Clostridium perfringens str. 13 989680 NP_562288.1 CDS CPE1372 NC_003366.1 1623511 1624206 D similar to gpu:AP001510_5 BH0830 gene product from Bacillus halodurans (186 aa); 42.1% identity in 152 aa overlap. 6 transmembrane regions were found by PSORT.; proton-coupled thiamine transporter YuaJ 1623511..1624206 Clostridium perfringens str. 13 989681 NP_562289.1 CDS hisC NC_003366.1 1624315 1625391 D similar to sp:HIS8_METTH PROBABLE HISTIDINOL-PHOSPHATE AMINOTRANSFERASE (EC 2.6.1.9) (IMIDAZOLE ACETOL-PHOSPHATE TRANSAMINASE) from Methanobacterium thermoautotrophicum (strain Delta H) (373 aa); 29.9% identity in 351 aa overlap; aminotransferase 1624315..1625391 Clostridium perfringens str. 13 989682 NP_562290.1 CDS CPE1374 NC_003366.1 1625522 1626568 R similar to pir:S75587 H+/Ca2+ exchanging protein from Synechocystis sp. (strain PCC 6803) (372 aa); 48.6% identity in 346 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; calcium/proton exchanger complement(1625522..1626568) Clostridium perfringens str. 13 989683 NP_562291.1 CDS CPE1375 NC_003366.1 1627010 1628305 R partially similar to gpu:HSJ131F15_2 dJ131F15.2 (phosphodiesterase I/nucleotide pyrophosphatase 1 (homologous to mouse Ly-41 antigen) (PC1, NPPS)) from Homo sapiens (845 aa); 32.1% identity in 218 aa overlap; phosphodiesterase/nucleotide pyrophosphatase complement(1627010..1628305) Clostridium perfringens str. 13 989684 NP_562292.1 CDS CPE1376 NC_003366.1 1628362 1628697 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(1628362..1628697) Clostridium perfringens str. 13 989685 NP_562293.1 CDS CPE1377 NC_003366.1 1628835 1629248 R no significant homology; hypothetical protein complement(1628835..1629248) Clostridium perfringens str. 13 989686 NP_562294.1 CDS CPE1378 NC_003366.1 1629448 1630359 R similar to gpu:AE004347_10 conserved hypothetical protein from Vibrio cholerae (308 aa); 28.4% identity in 271 aa overlap. 8 transmembrane regions were found by PSORT.; hypothetical protein complement(1629448..1630359) Clostridium perfringens str. 13 989687 NP_562295.1 CDS CPE1379 NC_003366.1 1630393 1631184 R similar to pir:F69903 D-alanyl-D-alanine carboxypeptidase homolog yodJ from Bacillus subtilis (273 aa); 39.8% identity in 191 aa overlap. N-terminal signal sequence was found by PSORT; D-alanyl-D-alanine carboxypeptidase complement(1630393..1631184) Clostridium perfringens str. 13 989688 NP_562296.1 CDS CPE1380 NC_003366.1 1631454 1631780 R no significant homology N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(1631454..1631780) Clostridium perfringens str. 13 989689 NP_562297.1 CDS CPE1381 NC_003366.1 1632265 1633206 D no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 1632265..1633206 Clostridium perfringens str. 13 989691 NP_562298.1 CDS map NC_003366.1 1633244 1634113 R similar to pir:D83189 methionine aminopeptidase PA3657 from Pseudomonas aeruginosa (strain PAO1) (261 aa); 55.9% identity in 245 aa overlap; methionine aminopeptidase complement(1633244..1634113) Clostridium perfringens str. 13 989692 NP_562299.1 CDS CPE1383 NC_003366.1 1634461 1635057 R no significant homology; hypothetical protein complement(1634461..1635057) Clostridium perfringens str. 13 989693 NP_562300.1 CDS CPE1384 NC_003366.1 1635159 1636082 D no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 1635159..1636082 Clostridium perfringens str. 13 989694 NP_562301.1 CDS CPE1385 NC_003366.1 1636222 1636791 R no significant homology; hypothetical protein complement(1636222..1636791) Clostridium perfringens str. 13 989695 NP_562302.1 CDS CPE1386 NC_003366.1 1636877 1637134 R no significant homology; hypothetical protein complement(1636877..1637134) Clostridium perfringens str. 13 989696 NP_562303.1 CDS CPE1387 NC_003366.1 1637156 1637371 R no significant homology 2 transmembrane regions were found by PSORT.; hypothetical protein complement(1637156..1637371) Clostridium perfringens str. 13 989697 NP_562304.1 CDS CPE1388 NC_003366.1 1637407 1637889 R no significant homology 2 transmembrane regions were found by PSORT.; hypothetical protein complement(1637407..1637889) Clostridium perfringens str. 13 989698 NP_562305.1 CDS engB NC_003366.1 1638106 1638699 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1638106..1638699) Clostridium perfringens str. 13 989699 NP_562306.1 CDS lonA NC_003366.1 1638699 1641029 R similar to sp:LON_BACBR ATP-DEPENDENT PROTEASE LA (EC 3.4.21.53 from Bacillus brevis (779 aa); 51% identity in 770 aa overlap; ATP-dependent protease La complement(1638699..1641029) Clostridium perfringens str. 13 989700 NP_562307.1 CDS lonB NC_003366.1 1641151 1642863 R similar to sp:LON2_BACSU ATP-DEPENDENT PROTEASE LA HOMOLOG (EC 3.4.21.-) from Bacillus subtilis (552 aa); 58.2% identity in 507 aa overlap. N-terminal signal sequence was found by PSORT; Lon-like ATP-dependent protease complement(1641151..1642863) Clostridium perfringens str. 13 989701 NP_562308.1 CDS clpX NC_003366.1 1642974 1644281 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(1642974..1644281) Clostridium perfringens str. 13 989702 NP_562309.1 CDS clpP NC_003366.1 1644321 1644905 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(1644321..1644905) Clostridium perfringens str. 13 989703 NP_562310.1 CDS tig NC_003366.1 1645096 1646382 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(1645096..1646382) Clostridium perfringens str. 13 989704 NP_562311.1 CDS CPE1395 NC_003366.1 1646480 1647298 R similar to sp:YD11_METJA HYPOTHETICAL PROTEIN MJ1311 from Methanococcus jannaschii (293 aa); 26% identity in 262 aa overlap; hypothetical protein complement(1646480..1647298) Clostridium perfringens str. 13 989705 NP_562312.1 CDS CPE1396 NC_003366.1 1647504 1649090 D similar to gpu:AP001515_118 ATP-dependent RNA helicase from Bacillus halodurans] (539 aa); 46.8% identity in 524 aa overlap; ATP-dependent RNA helicase 1647504..1649090 Clostridium perfringens str. 13 989706 NP_562313.1 CDS CPE1397 NC_003366.1 1649129 1649392 R no significant homology. S.D. unclear; hypothetical protein complement(1649129..1649392) Clostridium perfringens str. 13 989707 NP_562314.1 CDS deoD NC_003366.1 1649585 1650292 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1649585..1650292 Clostridium perfringens str. 13 989708 NP_562315.1 CDS CPE1399 NC_003366.1 1650343 1651626 R partially similar to pir:A70030 hypothetical protein yvbJ from Bacillus subtilis (605 aa); 22.1% identity in 321 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein complement(1650343..1651626) Clostridium perfringens str. 13 989709 NP_562316.1 CDS CPE1400 NC_003366.1 1651637 1651981 R no significant homology; hypothetical protein complement(1651637..1651981) Clostridium perfringens str. 13 989710 NP_562317.1 CDS CPE1401 NC_003366.1 1652165 1653073 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(1652165..1653073) Clostridium perfringens str. 13 989711 NP_562318.1 CDS CPE1402 NC_003366.1 1653320 1656241 R similar to gpu:AP000419_7 zinc metalloprotease (insulinase) from Arabidopsis thaliana (1052 aa); 36.7% identity in 960 aa overlap; insulinase; zinc metalloprotease complement(1653320..1656241) Clostridium perfringens str. 13 989712 NP_562319.1 CDS CPE1403 NC_003366.1 1656616 1656885 R no significant homology N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein complement(1656616..1656885) Clostridium perfringens str. 13 989713 NP_562320.1 CDS CPE1404 NC_003366.1 1657055 1658206 D similar to gp:BSU58864_1 Bacillus subtilis methylase homolog (cspR) gene, complete cds from Bacillus subtilis (174 aa); 31.6% identity in 117 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1657055..1658206 Clostridium perfringens str. 13 989714 NP_562321.1 CDS CPE1405 NC_003366.1 1658258 1658983 R similar to pir:G81691 N-acetylmuramoyl-L-alanine amidase, probable TC0539 from Chlamydia muridarum (strain Nigg) (268 aa); 29.1% identity in 172 aa overlap. N-terminal signal sequence was found by PSORT; N-acetylmuramoyl-L-alanine amidase complement(1658258..1658983) Clostridium perfringens str. 13 989715 NP_562322.1 CDS CPE1406 NC_003366.1 1659141 1659347 D hypothetical protein 1659141..1659347 Clostridium perfringens str. 13 989716 NP_562323.1 CDS CPE1407 NC_003366.1 1659365 1659718 D similar to gpu:AF225976_1 flavoredoxin from Desulfovibrio giga (194 aa); 31.7% identity in 145 aa overlap; hypothetical protein 1659365..1659718 Clostridium perfringens str. 13 989717 NP_562324.1 CDS CPE1408 NC_003366.1 1659846 1661417 R similar to gpu:AE004383_5 conserved hypothetical protein from Vibrio cholerae (468 aa); 28.9% identity in 353 aa overlap. 11 transmembrane regions were found by PSORT.; hypothetical protein complement(1659846..1661417) Clostridium perfringens str. 13 989718 NP_562325.1 CDS CPE1409 NC_003366.1 1661680 1662990 D similar to pir:E72398 hypothetical protein TM0244 from Thermotoga maritima (strain MSB8) (451 aa); 41.4% identity in 430 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1661680..1662990 Clostridium perfringens str. 13 989719 NP_562326.1 CDS CPE1410 NC_003366.1 1663004 1663984 D similar to pir:F72398 Na-translocating NADH-quinone reductase, Nqr2 subunit from Thermotoga maritima (strain MSB8) (318 aa); 39.7% identity in 300 aa overlap. 6 transmembrane regions were found by PSORT.; Na-translocating NADH-quinone reductase Nqr2 subunit 1663004..1663984 Clostridium perfringens str. 13 989720 NP_562327.1 CDS CPE1411 NC_003366.1 1664307 1664564 R similar to pir:E83269 hypothetical protein PA3012 from Pseudomonas aeruginosa (strain PAO1) (124 aa); 58.5% identity in 53 aa overlap; hypothetical protein complement(1664307..1664564) Clostridium perfringens str. 13 989721 NP_562328.1 CDS thiI NC_003366.1 1664692 1665849 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(1664692..1665849) Clostridium perfringens str. 13 989722 NP_562329.1 CDS nifS NC_003366.1 1665846 1666991 R similar to pir:F72223 iron-sulfur cofactor synthesis protein TM1692 from Thermotoga maritima (strain MSB8) (384 aa); 42.6% identity in 376 aa overlap; class V aminotransferase complement(1665846..1666991) Clostridium perfringens str. 13 989723 NP_562330.1 CDS pheB NC_003366.1 1667165 1667602 R similar to gpu:AP001511_103 chorismate mutase from Bacillus halodurans (147 aa); 36% identity in 136 aa overlap; hypothetical protein complement(1667165..1667602) Clostridium perfringens str. 13 989724 NP_562331.1 CDS CPE1415 NC_003366.1 1667981 1670560 R similar to gpu:AP001509_227 BH0789 gene product from Bacillus halodurans (777 aa); 41.4% identity in 684 aa overlap; hypothetical protein complement(1667981..1670560) Clostridium perfringens str. 13 989725 NP_562332.1 CDS CPE1416 NC_003366.1 1670669 1671250 R similar to sp:YP20_BACLI HYPOTHETICAL P20 PROTEIN from Bacillus licheniformis (178 aa); 38.7% identity in 111 aa overlap; hypothetical protein complement(1670669..1671250) Clostridium perfringens str. 13 989726 NP_562333.1 CDS CPE1417 NC_003366.1 1671289 1672128 R similar to N-terminal of pir:B72397 5-methyltetrahydrofolate S-homocysteine methyltransferase from Thermotoga maritima (strain MSB8) (768 aa); 36.6% identity in 268 aa overlap; hypothetical protein complement(1671289..1672128) Clostridium perfringens str. 13 989727 NP_562334.1 CDS CPE1418 NC_003366.1 1672370 1673098 D similar to pir:G72223 hypothetical protein TM1693 from Thermotoga maritima (strain MSB8) (247 aa); 42.3% identity in 175 aa overlap; hypothetical protein 1672370..1673098 Clostridium perfringens str. 13 989728 NP_562335.1 CDS CPE1419 NC_003366.1 1673142 1674530 R similar to pir:H64099 probable amino acid transport protein HI0883, sodium-dependent from Haemophilus influenzae (strain Rd KW20) (456 aa); 58.2% identity in 445 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; amino acid ABC transporter complement(1673142..1674530) Clostridium perfringens str. 13 989729 NP_562336.1 CDS CPE1420 NC_003366.1 1674837 1675493 R partially similar to pir:C70485 poly A polymerase from Aquifex aeolicus (512 aa); 35.2% identity in 182 aa overlap; poly A polymerase complement(1674837..1675493) Clostridium perfringens str. 13 989730 NP_562337.1 CDS CPE1421 NC_003366.1 1675816 1676568 D partially similar to gp:BAMALAMYA_3 membrane protein from Bacillus acidopullulyticus (183 aa); 26.4% identity in 239 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 1675816..1676568 Clostridium perfringens str. 13 989731 NP_562338.1 CDS CPE1422 NC_003366.1 1676773 1677750 D similar to sp:YD33_MYCTU HYPOTHETICAL 33.9 KDA PROTEIN RV1333 from Mycobacterium tuberculosis (strain H37RV) (344 aa); 39.2% identity in 316 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1676773..1677750 Clostridium perfringens str. 13 989732 NP_562339.1 CDS sas2 NC_003366.1 1677991 1678173 D similar to pir:JN0083 small acid-soluble spore protein C2 from Clostridium perfringens (60 aa); 100% identity in 60 aa overlap; small acid-soluble spore protein C2 1677991..1678173 Clostridium perfringens str. 13 989733 NP_562340.1 CDS CPE1424 NC_003366.1 1678221 1678661 R similar to pir:S74403 hypothetical protein slr0491 from Synechocystis sp. (strain PCC 6803) (144 aa); 29.2% identity in 137 aa overlap; hypothetical protein complement(1678221..1678661) Clostridium perfringens str. 13 989734 NP_562341.1 CDS CPE1425 NC_003366.1 1678661 1679308 R catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline; pyrrolidone-carboxylate peptidase complement(1678661..1679308) Clostridium perfringens str. 13 989735 NP_562342.1 CDS CPE1426 NC_003366.1 1679338 1680267 R similar to pir:A81402 probable integral membrane protein Cj0553 from Campylobacter jejuni (strain NCTC 11168) (317 aa); 37.2% identity in 301 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein complement(1679338..1680267) Clostridium perfringens str. 13 989736 NP_562343.1 CDS CPE1427 NC_003366.1 1680280 1680960 R similar to pir:H81401 hydrophobic protein Cj0552 from Campylobacter jejuni (strain NCTC 11168) (230 aa); 39.7% identity in 204 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein complement(1680280..1680960) Clostridium perfringens str. 13 989737 NP_562344.1 CDS clpB NC_003366.1 1681198 1683798 R similar to pir:S76197 endopeptidase Clp ATP-binding chain B1 from Synechocystis sp. (strain PCC 6803) (867 aa); 55.8% identity in 577 aa overlap; clpB protein complement(1681198..1683798) Clostridium perfringens str. 13 989738 NP_562345.1 CDS CPE1429 NC_003366.1 1684114 1685655 D similar to gp:AP001516_278 GTP pyrophosphokinase from Bacillus halodurans (211 aa); 30.2% identity in 139 aa overlap; hypothetical protein 1684114..1685655 Clostridium perfringens str. 13 989739 NP_562346.1 CDS clsD NC_003366.1 1685736 1687166 D similar to sp:CLS_CLOPE CARDIOLIPIN SYNTHETASE (EC 2.7.8.-) (CARDIOLIPIN SYNTHASE) (CL SYNTHASE) from Clostridium perfringens (476 aa); 99.8% identity in 454 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; cardiolipin synthase 1685736..1687166 Clostridium perfringens str. 13 989740 NP_562347.1 CDS CPE1431 NC_003366.1 1687324 1688949 R similar to pir:T43862 FAD flavoprotein oxidase from Clostridium perfringens (541 aa); 93% identity in 541 aa overlap. N-terminal signal sequence was found by PSORT; FAD flavoprotein oxidase complement(1687324..1688949) Clostridium perfringens str. 13 989741 NP_562348.1 CDS hemL NC_003366.1 1689150 1690433 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(1689150..1690433) Clostridium perfringens str. 13 989742 NP_562349.1 CDS hemB NC_003366.1 1690491 1691456 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(1690491..1691456) Clostridium perfringens str. 13 989743 NP_562350.1 CDS hemX NC_003366.1 1691513 1692991 R similar to >pir:T43859 uroporphyrinogen III methylas from Clostridium perfringens (492 aa); 96.3% identity in 492 aa overlap; uroporphyrinogen-III methyltransferase/synthase complement(1691513..1692991) Clostridium perfringens str. 13 989744 NP_562351.1 CDS hemC NC_003366.1 1693000 1693875 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(1693000..1693875) Clostridium perfringens str. 13 989745 NP_562352.1 CDS CPE1436 NC_003366.1 1693933 1694595 R catalyzes the formation of siroheme from precorrin-2; precorrin-2 dehydrogenase complement(1693933..1694595) Clostridium perfringens str. 13 989746 NP_562353.1 CDS hemA NC_003366.1 1694559 1695761 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(1694559..1695761) Clostridium perfringens str. 13 989747 NP_562354.1 CDS asrC NC_003366.1 1696177 1697157 R similar to sp:ASRC_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT C (EC 1.8.1.-) from Salmonella typhimurium (337 aa); 43.4% identity in 318 aa overlap; anaerobic sulfite reductase subunit C complement(1696177..1697157) Clostridium perfringens str. 13 989748 NP_562355.1 CDS asrB NC_003366.1 1697171 1697962 R with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B complement(1697171..1697962) Clostridium perfringens str. 13 989749 NP_562356.1 CDS asrA NC_003366.1 1697955 1698971 R similar to sp:ASRA_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT A (ANAEROBIC SULFITE REDUCTASE IRON-SULFUR SUBUNIT) from Salmonella typhimurium (347 aa); 45.3% identity in 333 aa overlap; anaerobic sulfite reductase subunit A complement(1697955..1698971) Clostridium perfringens str. 13 989750 NP_562357.1 CDS CPE1441 NC_003366.1 1699211 1699903 R similar to pir:T36556 probable transcription regulator from Streptomyces coelicolor (224 aa); 22.9% identity in 192 aa overlap; Crp/Fnr family; Crp/Fnr family transcriptional regulator complement(1699211..1699903) Clostridium perfringens str. 13 989751 NP_562358.1 CDS nirC NC_003366.1 1700121 1700918 R similar to pir:S39703 nitrite transport protein homolog ywcJ from Bacillus subtilis (256 aa); 37.9% identity in 214 aa overlap. 7 transmembrane regions were found by PSORT.; nitrite transporter complement(1700121..1700918) Clostridium perfringens str. 13 989752 NP_562359.1 CDS CPE1443 NC_003366.1 1701126 1701746 R similar to no homology from (410 aa); 28.3% identity in 127 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein complement(1701126..1701746) Clostridium perfringens str. 13 989753 NP_562360.1 CDS CPE1444 NC_003366.1 1701724 1702005 R similar to pir:A69742 conserved hypothetical protein yazA from Bacillus subtilis (99 aa); 51.6% identity in 91 aa overlap. S.D. unclear; GIY-YIG domain-containing protein complement(1701724..1702005) Clostridium perfringens str. 13 989754 NP_562361.1 CDS CPE1445 NC_003366.1 1702268 1704328 D similar to gp:AB042614_1 beta-1,4-xylosidase with transcriptional regulator of AraC/XylS family from Aeromonas caviae (745 aa); 26.2% identity in 237 aa overlap; AraC/XylS family; AraC family transcriptional regulator 1702268..1704328 Clostridium perfringens str. 13 989755 NP_562362.1 CDS CPE1446 NC_003366.1 1704792 1706057 R similar to prf:2105286A transcriptional activator from Lactobacillus sp (424 aa); 22.4% identity in 398 aa overlap; hypothetical protein complement(1704792..1706057) Clostridium perfringens str. 13 989756 NP_562363.1 CDS CPE1447 NC_003366.1 1706074 1706826 R partially similar to prf:1616280A neutral protease transcriptional activator from Bacillus stearothermophilus (406 aa); 22.2% identity in 144 aa overlap. ATA start; hypothetical protein complement(1706074..1706826) Clostridium perfringens str. 13 989757 NP_562364.1 CDS CPE1448 NC_003366.1 1706848 1707375 R partially similar to pir:JC6007 transcription activator plcR from Bacillus thuringiensis (285 aa); 27.8% identity in 144 aa overlap; transcriptional regulator complement(1706848..1707375) Clostridium perfringens str. 13 989758 NP_562365.1 CDS CPE1449 NC_003366.1 1707673 1707834 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(1707673..1707834) Clostridium perfringens str. 13 989759 NP_562366.1 CDS CPE1450 NC_003366.1 1707913 1708542 R similar to pir:B72269 ribonuclease H-related protein from Thermotoga maritima (strain MSB8) (223 aa); 37.1% identity in 205 aa overlap; ribonuclease H-like protein complement(1707913..1708542) Clostridium perfringens str. 13 989760 NP_562367.1 CDS CPE1451 NC_003366.1 1708558 1709529 R similar to pir:G69161 conserved hypothetical protein MTH471 from Methanobacterium thermoautotrophicum (strain Delta H) (138 aa); 24.8% identity in 105 aa overlap. 3 transmembrane regions were found by PSORT.; hypothetical protein complement(1708558..1709529) Clostridium perfringens str. 13 989761 NP_562368.1 CDS CPE1452 NC_003366.1 1709642 1710670 R partially similar to sp:YQGP_BACSU HYPOTHETICAL 56.4 KDA PROTEIN IN SODA-COMGA INTERGENIC REGION. from Bacillus subtilis (507 aa); 43% identity in 151 aa overlap. 5 transmembrane regions were found by PSORT.; rhomboid family protein complement(1709642..1710670) Clostridium perfringens str. 13 989762 NP_562369.1 CDS pepF NC_003366.1 1710688 1712487 R similar to pir:T44581 thimet oligopeptidase (EC 3.4.24.15) from Bacillus licheniformis (628 aa); 46.4% identity in 603 aa overlap; oligoendopeptidase F complement(1710688..1712487) Clostridium perfringens str. 13 989763 NP_562370.1 CDS CPE1454 NC_003366.1 1712508 1712906 R no significant homology; hypothetical protein complement(1712508..1712906) Clostridium perfringens str. 13 989764 NP_562371.1 CDS CPE1455 NC_003366.1 1713075 1713410 D no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 1713075..1713410 Clostridium perfringens str. 13 989765 NP_562372.1 CDS CPE1456 NC_003366.1 1713483 1714151 D similar to pir:E71375 probable ABC transporter, ATP-binding protein from Treponema pallidum (238 aa); 37.3% identity in 212 aa overlap; ATP-binding protein; ABC transporter 1713483..1714151 Clostridium perfringens str. 13 989766 NP_562373.1 CDS CPE1457 NC_003366.1 1714170 1714979 D similar to pir:F71375 probable ABC transporter, permease from [Treponema pallidum (266 aa); 41.7% identity in 242 aa overlap. 7 transmembrane regions were found by PSORT.; permease; ABC transporter 1714170..1714979 Clostridium perfringens str. 13 989767 NP_562374.1 CDS CPE1458 NC_003366.1 1714974 1715153 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(1714974..1715153) Clostridium perfringens str. 13 989768 NP_562375.1 CDS CPE1459 NC_003366.1 1715138 1716529 R similar to pir:H72331 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (464 aa); 26.3% identity in 411 aa overlap. 10 transmembrane regions were found by PSORT.; hypothetical protein complement(1715138..1716529) Clostridium perfringens str. 13 989769 NP_562376.1 CDS CPE1460 NC_003366.1 1716808 1718226 R no significant homology; hypothetical protein complement(1716808..1718226) Clostridium perfringens str. 13 989770 NP_562377.1 CDS CPE1461 NC_003366.1 1718309 1719232 R no significant homology; hypothetical protein complement(1718309..1719232) Clostridium perfringens str. 13 989771 NP_562378.1 CDS furR NC_003366.1 1719499 1719909 R similar to sp:FUR_CAMJE FERRIC UPTAKE REGULATION PROTEIN (FERRIC UPTAKE REGULATOR) from Campylobacter jejuni (strain NCTC 11168) (157 aa); 33.8% identity in 133 aa overlap; FUR family transcriptional regulator complement(1719499..1719909) Clostridium perfringens str. 13 989772 NP_562379.1 CDS CPE1463 NC_003366.1 1720201 1721028 R similar to sp:PTND_ECOLI PTS SYSTEM, MANNOSE-SPECIFIC IID COMPONENT (EIID-MAN) (MANNOSE- PERMEASE IID COMPONENT) (PHOSPHOTRANSFERASE ENZYME II, D COMPONENT) (EII-M-MAN) from Escherichia coli (286 aa); 34.8% identity in 247 aa overlap. 4 transmembrane regions were found by PSORT.; mannose-specific IID component; PTS system protein complement(1720201..1721028) Clostridium perfringens str. 13 989773 NP_562380.1 CDS CPE1464 NC_003366.1 1721028 1721834 R similar to gp:VFU65015_2 PTS permease for mannose subunit IIPMan from Vibrio furnissii (258 aa); 30.3% identity in 221 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; mannose-specific IIC component; PTS system protein complement(1721028..1721834) Clostridium perfringens str. 13 989774 NP_562381.1 CDS CPE1465 NC_003366.1 1721989 1722486 R similar to pir:WQECM3 phosphotransferase system enzyme II (EC 2.7.1.69), mannose-specific, factor IIAB from Escherichia coli (323 aa); 30.2% identity in 139 aa overlap; mannose-specific IIAB component; PTS system protein complement(1721989..1722486) Clostridium perfringens str. 13 989775 NP_562382.1 CDS CPE1466 NC_003366.1 1722641 1723060 R partially similar to gp:AF130465_1 mannose-specific phosphotransferase system component IIAB from Streptococcus salivarius (330 aa); 31.6% identity in 95 aa overlap. 1 transmembrane region was found by PSORT; mannose-specific IIAB component; PTS system protein complement(1722641..1723060) Clostridium perfringens str. 13 989776 NP_562383.1 CDS pfk NC_003366.1 1723470 1724672 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 1723470..1724672 Clostridium perfringens str. 13 989777 NP_562384.1 CDS CPE1468 NC_003366.1 1724731 1725096 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(1724731..1725096) Clostridium perfringens str. 13 989778 NP_562385.1 CDS CPE1469 NC_003366.1 1725353 1726639 R similar to pir:T35528 probable aminotransferase from Streptomyces coelicolor (476 aa); 32.1% identity in 414 aa overlap. 1 transmembrane region was found by PSORT; class V aminotransferase complement(1725353..1726639) Clostridium perfringens str. 13 989779 NP_562386.1 CDS CPE1470 NC_003366.1 1726809 1728740 D similar to gpu:AP001508_273 ABC transporter (ATP-binding protein) from Bacillus halodurans (642 aa); 37.9% identity in 634 aa overlap; ATP-binding protein; prbable ABC transporter 1726809..1728740 Clostridium perfringens str. 13 989780 NP_562387.1 CDS dut NC_003366.1 1728905 1729369 R similar to pir:H69888 deoxyuridine 5'-triphosphate pyrophosphatase homolog yncF from Bacillus subtili (144 aa); 48.1% identity in 154 aa overlap; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(1728905..1729369) Clostridium perfringens str. 13 989781 NP_562388.1 CDS CPE1472 NC_003366.1 1729504 1730094 R no significant homology; hypothetical protein complement(1729504..1730094) Clostridium perfringens str. 13 989782 NP_562389.1 CDS CPE1473 NC_003366.1 1730180 1730734 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(1730180..1730734) Clostridium perfringens str. 13 989783 NP_562390.1 CDS hlyC NC_003366.1 1730973 1731620 D similar to pir:H75342 probable hemolysin Deinococcus radiodurans (strain R1) from Deinococcus radiodurans (strain R1) (219 aa); 36.3% identity in 212 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hemolysin III 1730973..1731620 Clostridium perfringens str. 13 989784 NP_562391.1 CDS CPE1475 NC_003366.1 1731671 1732555 R similar to sp:YEIE_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN LYSP-NFO INTERGENIC REGION from Escherichia coli (293 aa); 34.7% identity in 285 aa overlap. 1 transmembrane region was found by PSORT; LysR-family; LysR family transcriptional regulator complement(1731671..1732555) Clostridium perfringens str. 13 989785 NP_562392.1 CDS CPE1476 NC_003366.1 1732567 1732851 R no significant homology N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein complement(1732567..1732851) Clostridium perfringens str. 13 989786 NP_562393.1 CDS CPE1477 NC_003366.1 1733027 1733743 D similar to pir:F69829 endo-1,4-beta-xylanase homolog yheN from Bacillus subtilis (282 aa); 35.4% identity in 198 aa overlap. N-terminal signal sequence was found by PSORT; polysaccharide deacetylase 1733027..1733743 Clostridium perfringens str. 13 989787 NP_562394.1 CDS CPE1478 NC_003366.1 1733760 1734296 R no significant homology; hypothetical protein complement(1733760..1734296) Clostridium perfringens str. 13 989788 NP_562395.1 CDS CPE1479 NC_003366.1 1734415 1735050 R no significant homology; hypothetical protein complement(1734415..1735050) Clostridium perfringens str. 13 989789 NP_562396.1 CDS CPE1480 NC_003366.1 1735270 1736925 D similar to gpu:AE004350_10 sulfate permease from Vibrio cholera (553 aa); 43.4% identity in 535 aa overlap. 10 transmembrane regions were found by PSORT.; sulfate permease 1735270..1736925 Clostridium perfringens str. 13 989790 NP_562397.1 CDS CPE1481 NC_003366.1 1736966 1737118 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(1736966..1737118) Clostridium perfringens str. 13 989791 NP_562398.1 CDS CPE1482 NC_003366.1 1737195 1738160 R similar to sp:YEIC_ECOLI HYPOTHETICAL SUGAR KINASE IN NFO-FRUA INTERGENIC REGIO from Escherichia coli (313 aa); 33.7% identity in 306 aa overlap; sugar kinase complement(1737195..1738160) Clostridium perfringens str. 13 989792 NP_562399.1 CDS CPE1483 NC_003366.1 1738200 1738394 R similar to gpu:AE004172_2 hypothetical protein from Vibrio cholerae (63 aa); 36.1% identity in 61 aa overlap; hypothetical protein complement(1738200..1738394) Clostridium perfringens str. 13 989793 NP_562400.1 CDS CPE1484 NC_003366.1 1738652 1739980 R similar to pir:A71849 hypothetical protein jhp1110 from Helicobacter pylori (strain J99) (459 aa); 27.3% identity in 436 aa overlap. 11 transmembrane regions were found by PSORT.; MATE efflux family protein complement(1738652..1739980) Clostridium perfringens str. 13 989794 NP_562401.1 CDS CPE1485 NC_003366.1 1740001 1740687 R similar to gpu:AP001511_100 ABC transporter (ATP-binding protein) from Bacillus halodurans (264 aa); 39.3% identity in 206 aa overlap; ATP-binding protein; ABC transporter complement(1740001..1740687) Clostridium perfringens str. 13 989795 NP_562402.1 CDS CPE1486 NC_003366.1 1740689 1741444 R similar to pir:E72405 ABC transporter, permease, cysTW family from Thermotoga maritima (strain MSB8) (243 aa); 23.9% identity in 226 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permeaese protein; ABC transporter complement(1740689..1741444) Clostridium perfringens str. 13 989796 NP_562403.1 CDS CPE1487 NC_003366.1 1741419 1742423 R similar to pir:D72405 hypothetical protein from Thermotoga maritima (strain MSB8) (300 aa); 29.7% identity in 266 aa overlap; hypothetical protein complement(1741419..1742423) Clostridium perfringens str. 13 989797 NP_562404.1 CDS CPE1488 NC_003366.1 1742670 1742855 R no significant homology; hypothetical protein complement(1742670..1742855) Clostridium perfringens str. 13 989798 NP_562405.1 CDS CPE1489 NC_003366.1 1743060 1743917 R no significant homology; hypothetical protein complement(1743060..1743917) Clostridium perfringens str. 13 989799 NP_562406.1 CDS CPE1490 NC_003366.1 1744021 1744797 R no significant homology N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; hypothetical protein complement(1744021..1744797) Clostridium perfringens str. 13 989800 NP_562407.1 CDS CPE1491 NC_003366.1 1745032 1745454 D no significant homology; hypothetical protein 1745032..1745454 Clostridium perfringens str. 13 989801 NP_562408.1 CDS CPE1492 NC_003366.1 1745657 1746181 R partially similar to sp:APL_LACLC ALKALINE PHOSPHATASE LIKE PROTEIN from Lactococcus lactis (242 aa); 28% identity in 157 aa overlap. 4 transmembrane regions were found by PSORT.; hypothetical protein complement(1745657..1746181) Clostridium perfringens str. 13 989802 NP_562409.1 CDS CPE1493 NC_003366.1 1746252 1746761 R similar to pir:B81322 probable integral membrane protein (dedA homolog) Cj1168c from Campylobacter jejuni (strain NCTC 11168) (200 aa); 29.7% identity in 158 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein complement(1746252..1746761) Clostridium perfringens str. 13 989803 NP_562410.1 CDS CPE1494 NC_003366.1 1747023 1747856 R similar to gpu:AE004222_1 conserved hypothetical protein from Vibrio cholerae (310 aa); 33.1% identity in 275 aa overlap; PP-loop family protein complement(1747023..1747856) Clostridium perfringens str. 13 989804 NP_562411.1 CDS CPE1495 NC_003366.1 1747807 1748061 R no significant homology; hypothetical protein complement(1747807..1748061) Clostridium perfringens str. 13 989805 NP_562412.1 CDS CPE1496 NC_003366.1 1748260 1748529 D ACT domain-containing protein; hypothetical protein 1748260..1748529 Clostridium perfringens str. 13 989806 NP_562413.1 CDS CPE1497 NC_003366.1 1748546 1749898 D similar to pir:C81059 conserved hypothetical protein NMB1652 from Neisseria meningitidis (group B strain MD58) (451 aa); 69% identity in 449 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1748546..1749898 Clostridium perfringens str. 13 989807 NP_562414.1 CDS CPE1498 NC_003366.1 1750111 1750614 R no significant homology N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein complement(1750111..1750614) Clostridium perfringens str. 13 989808 NP_562415.1 CDS comEC NC_003366.1 1750939 1751814 R similar to pir:T44344 late competence protein homolog comEC from Bacillus halodurans (266 aa); 33.7% identity in 246 aa overlap; late competence protein complement(1750939..1751814) Clostridium perfringens str. 13 989809 NP_562416.1 CDS virS NC_003366.1 1751985 1753307 R similar to pir:C55521 virS protein from Clostridium perfringens (440 aa); 85.7% identity in 440 aa overlap. 5 transmembrane regions were found by PSORT.; sensor histidine kinase VirS complement(1751985..1753307) Clostridium perfringens str. 13 989810 NP_562417.1 CDS virR NC_003366.1 1753301 1754011 R similar to pir:S60139 virR protein from Clostridium perfringens (252 aa); 100% identity in 237 aa overlap; DNA-binding response regulator, LytTr family complement(1753301..1754011) Clostridium perfringens str. 13 989811 NP_562418.1 CDS CPE1502 NC_003366.1 1754150 1755163 R similar to pir:S49554 hypothetical protein 10C from Clostridium perfringens (337 aa); 95.5% identity in 337 aa overlap; hypothetical protein complement(1754150..1755163) Clostridium perfringens str. 13 989812 NP_562419.1 CDS CPE1503 NC_003366.1 1755260 1755547 R similar to sp:YVI2_CLOPE HYPOTHETICAL 10.7 KDA PROTEIN IN VIRR 5'REGION (ORF2) from Clostridium perfringens (95 aa); 100% identity in 95 aa overlap; hypothetical protein complement(1755260..1755547) Clostridium perfringens str. 13 989813 NP_562420.1 CDS CPE1504 NC_003366.1 1755771 1756784 R similar to sp:YABE_BACSU HYPOTHETICAL 47.7 KDA PROTEIN IN METS-KSGA INTERGENIC REGION from Bacillus subtilis (437 aa); 33.8% identity in 305 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein complement(1755771..1756784) Clostridium perfringens str. 13 989814 NP_562421.1 CDS uraA NC_003366.1 1757210 1758508 R similar to sp:URAA_ECOLI URACIL PERMEASE (URACIL TRANSPORTER) from Escherichia coli (429 aa); 54.7% identity in 411 aa overlap. 12 transmembrane regions were found by PSORT.; uracil transporter complement(1757210..1758508) Clostridium perfringens str. 13 989815 NP_562422.1 CDS CPE1506 NC_003366.1 1758696 1760279 D similar to pir:E69861 ABC transporter (ATP-binding protein) homolog ykpA from Bacillus subtilis (540 aa); 70.7% identity in 525 aa overlap; ATP-binding protein; ABC transporter 1758696..1760279 Clostridium perfringens str. 13 989816 NP_562423.1 CDS CPE1507 NC_003366.1 1760330 1761292 R similar to pir:F69829 endo-1,4-beta-xylanase homolog yheN from Bacillus subtilis> (282 aa); 32.3% identity in 192 aa overlap. N-terminal signal sequence was found by PSORT; endo-1,4-beta-xylanase complement(1760330..1761292) Clostridium perfringens str. 13 989817 NP_562424.1 CDS topB NC_003366.1 1761676 1763862 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(1761676..1763862) Clostridium perfringens str. 13 989818 NP_562425.1 CDS CPE1509 NC_003366.1 1763959 1765377 R similar to pir:F69772 hypothetical protein ydbT from Bacillus subtilis (493 aa); 20.4% identity in 457 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein complement(1763959..1765377) Clostridium perfringens str. 13 989819 NP_562426.1 CDS CPE1510 NC_003366.1 1765387 1765854 R similar to gpu:AP001512_307 BH1720 gene product from Bacillus halodurans (159 aa); 29.7% identity in 91 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein complement(1765387..1765854) Clostridium perfringens str. 13 989820 NP_562427.1 CDS CPE1511 NC_003366.1 1766269 1766667 R no significant homology; hypothetical protein complement(1766269..1766667) Clostridium perfringens str. 13 989821 NP_562428.1 CDS CPE1512 NC_003366.1 1766875 1770156 R similar to gpu:AE003965_12 hypothetical protein from Xylella fastidiosa (1197 aa); 21.8% identity in 1080 aa overlap. Also similar to many sensor histidine kinases.. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hybrid; sensor histidine kinase/response regulator complement(1766875..1770156) Clostridium perfringens str. 13 989822 NP_562429.1 CDS CPE1513 NC_003366.1 1770238 1771338 R similar to gp:AF115542_1 unknown from Desulfitobacterium dehalogenans (388 aa); 25.9% identity in 363 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(1770238..1771338) Clostridium perfringens str. 13 989823 NP_562430.1 CDS argI NC_003366.1 1771353 1772720 R similar to prf:2212278A algI gene from Pseudomonas aeruginosa (520 aa); 41.3% identity in 387 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; AlgI-related protein complement(1771353..1772720) Clostridium perfringens str. 13 989824 NP_562431.1 CDS CPE1515 NC_003366.1 1772948 1773445 R no significant homology N-terminal signal sequence was found by PSORT; lipoprotein complement(1772948..1773445) Clostridium perfringens str. 13 989825 NP_562432.1 CDS CPE1516 NC_003366.1 1773697 1774920 R similar to gpu:AP001518_179 RNA helicase from Bacillus halodurans (389 aa); 38.2% identity in 377 aa overlap; ATP-dependent RNA helicase complement(1773697..1774920) Clostridium perfringens str. 13 989826 NP_562433.1 CDS CPE1517 NC_003366.1 1774938 1775249 R no significant homology; hypothetical protein complement(1774938..1775249) Clostridium perfringens str. 13 989827 NP_562434.1 CDS gdhA NC_003366.1 1775558 1776904 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(1775558..1776904) Clostridium perfringens str. 13 989828 NP_562435.1 CDS CPE1519 NC_003366.1 1777386 1777880 R no significant homology 2 transmembrane regions were found by PSORT.; hypothetical protein complement(1777386..1777880) Clostridium perfringens str. 13 989829 NP_562436.1 CDS ilvE NC_003366.1 1778114 1779139 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1778114..1779139 Clostridium perfringens str. 13 989830 NP_562437.1 CDS CPE1521 NC_003366.1 1779183 1779596 R partially similar to sp:CAPA_STAAU CAPA PROTEIN from Staphylococcus aureus (221 aa); 23.7% identity in 114 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(1779183..1779596) Clostridium perfringens str. 13 989831 NP_562438.1 CDS CPE1522 NC_003366.1 1779619 1780164 R no significant homology; hypothetical protein complement(1779619..1780164) Clostridium perfringens str. 13 989832 NP_562439.1 CDS nagL NC_003366.1 1780361 1783744 R similar to >sp:NAGH_CLOPE HYALURONOGLUCOSAMINIDASE PRECURSOR (EC 3.2.1.35) (HYALURONIDASE) (MU TOXIN from Clostridium perfringens (1042 aa); 27.8% identity in 946 aa overlap; hyaluronidase complement(1780361..1783744) Clostridium perfringens str. 13 989833 NP_562440.1 CDS CPE1524 NC_003366.1 1784103 1785029 D C-terminal portion is similar to sp:YAV4_XANCV HYPOTHETICAL 12 KDA AVIRULENCE PROTEIN IN AVRBS1 REGION from Xanthomonas campestris (104 aa); 39.6% identity in 91 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1784103..1785029 Clostridium perfringens str. 13 989834 NP_562441.1 CDS CPE1525 NC_003366.1 1785150 1786919 R similar to pir:S72638 hypothetical ABC exporter component B from Thermoanaerobacterium thermosulfurigenes (594 aa); 54% identity in 589 aa overlap. 6 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter complement(1785150..1786919) Clostridium perfringens str. 13 989835 NP_562442.1 CDS CPE1526 NC_003366.1 1786954 1788675 R similar to pir:S72637 hypothetical ABC exporter component A from Thermoanaerobacterium thermosulfurigenes (582 aa); 50.5% identity in 562 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter complement(1786954..1788675) Clostridium perfringens str. 13 989836 NP_562443.1 CDS CPE1527 NC_003366.1 1789308 1790102 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(1789308..1790102) Clostridium perfringens str. 13 989837 NP_562444.1 CDS CPE1528 NC_003366.1 1790285 1790644 R no significant homology N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(1790285..1790644) Clostridium perfringens str. 13 989838 NP_562445.1 CDS CPE1529 NC_003366.1 1790912 1792249 D partially similar to gp:AB001488_13 ydaL gene product from Bacillus subtilis (576 aa); 29.3% identity in 208 aa overlap; hypothetical protein 1790912..1792249 Clostridium perfringens str. 13 989839 NP_562446.1 CDS CPE1530 NC_003366.1 1792316 1792732 R no significant homology N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein complement(1792316..1792732) Clostridium perfringens str. 13 989840 NP_562447.1 CDS CPE1531 NC_003366.1 1792953 1793900 R similar to gp:AF059741_4 fructokinase from Clostridium beijerinckii (312 aa); 60.3% identity in 310 aa overlap; fructokinase complement(1792953..1793900) Clostridium perfringens str. 13 989841 NP_562448.1 CDS sacA NC_003366.1 1793893 1795356 R similar to gp:AF059741_3 sucrose-6-P hydrolase from Clostridium beijerinckii (485 aa); 51.1% identity in 479 aa overlap; sucrose-6-P hydrolase complement(1793893..1795356) Clostridium perfringens str. 13 989842 NP_562449.1 CDS CPE1533 NC_003366.1 1795396 1796376 R similar to gp:AF059741_2 sucrose repressor from Clostridium beijerinckii (330 aa); 62.5% identity in 320 aa overlap; sucrose operon repressor complement(1795396..1796376) Clostridium perfringens str. 13 989843 NP_562450.1 CDS CPE1534 NC_003366.1 1796505 1797857 R similar to gp:AF059741_1 sucrose-specific PTS permease from Clostridium beijerinckii (451 aa); 69.4% identity in 448 aa overlap. 10 transmembrane regions were found by PSORT.; sucrose-specific IIBC component; PTS system sucrose-specific transporter subunit IIBC complement(1796505..1797857) Clostridium perfringens str. 13 989844 NP_562451.1 CDS CPE1535 NC_003366.1 1798180 1798806 R partially similar to pir:C81254 hypothetical protein Cj1589 from Campylobacter jejuni (strain NCTC 11168) (265 aa); 31.7% identity in 82 aa overlap; hypothetical protein complement(1798180..1798806) Clostridium perfringens str. 13 989845 NP_562452.1 CDS asrC NC_003366.1 1799318 1800364 R similar to sp:ASRC_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT C (EC 1.8.1.-) from Salmonella typhimurium (337 aa); 50% identity in 334 aa overlap; anaerobic sulfite reductase subunit C complement(1799318..1800364) Clostridium perfringens str. 13 989846 NP_562453.1 CDS asrB NC_003366.1 1800377 1801168 R with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B complement(1800377..1801168) Clostridium perfringens str. 13 989847 NP_562454.1 CDS asrA NC_003366.1 1801169 1802200 R similar to sp:ASRA_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT A (ANAEROBIC SULFITE REDUCTASE IRON-SULFUR SUBUNIT) from Salmonella typhimurium (347 aa); 39.5% identity in 342 aa overlap; anaerobic sulfite reductase subunit A complement(1801169..1802200) Clostridium perfringens str. 13 989848 NP_562455.1 CDS CPE1539 NC_003366.1 1802460 1802870 D no significant homology N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 1802460..1802870 Clostridium perfringens str. 13 989849 NP_562456.1 CDS CPE1540 NC_003366.1 1802968 1804152 R similar to sp:YKNZ_BACSU HYPOTHETICAL 42.1 KDA PROTEIN IN MOAD-FRUR INTERGENIC REGION from Bacillus subtilis (397 aa); 30.1% identity in 392 aa overlap. 4 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter complement(1802968..1804152) Clostridium perfringens str. 13 989850 NP_562457.1 CDS CPE1541 NC_003366.1 1804139 1804840 R similar to sp:YF08_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN MJ1508 from Methanococcus jannaschii (224 aa); 53.2% identity in 222 aa overlap; ATP-binding protein; ABC transporter complement(1804139..1804840) Clostridium perfringens str. 13 989851 NP_562458.1 CDS CPE1542 NC_003366.1 1804830 1805960 R similar to pir:B70048 conserved hypothetical protein yvrP from Bacillus subtilis (397 aa); 28.9% identity in 374 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(1804830..1805960) Clostridium perfringens str. 13 989852 NP_562459.1 CDS bioD NC_003366.1 1806187 1806873 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(1806187..1806873) Clostridium perfringens str. 13 989853 NP_562460.1 CDS bioB NC_003366.1 1806876 1807835 R catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine; biotin synthase complement(1806876..1807835) Clostridium perfringens str. 13 989854 NP_562461.1 CDS bioY NC_003366.1 1807854 1808408 R similar to sp:BIOY_BACSH BIOY PROTEIN from Bacillus sphaericus (215 aa); 43.4% identity in 173 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; biotin synthase complement(1807854..1808408) Clostridium perfringens str. 13 989855 NP_562462.1 CDS CPE1546 NC_003366.1 1808794 1809885 R similar to sp:YPUA_BACSU HYPOTHETICAL 31.3 KDA PROTEIN IN LYSA-PPIB INTERGENIC REGION (ORFX19) from Bacillus subtilis (290 aa); 31% identity in 271 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(1808794..1809885) Clostridium perfringens str. 13 989856 NP_562463.1 CDS spoVK NC_003366.1 1810241 1813678 R similar to gp:AB015670_7 Bacillus sp. genes for CDase, CGTase, MBP and 15 ORFs, partial and complete cds from Bacillus sp (549 aa); 45% identity in 522 aa overlap.Also similar to prf:2516401X stage V sporulation protein K from Bacillus cereus; stage V sporulation protein K complement(1810241..1813678) Clostridium perfringens str. 13 989857 NP_562464.1 CDS fdh NC_003366.1 1813734 1815722 R similar to pir:S66017 formate dehydrogenase homolog yyaE from Bacillus subtilis (667 aa); 32.1% identity in 667 aa overlap; molybdopterin oxidoreductase complement(1813734..1815722) Clostridium perfringens str. 13 989858 NP_562465.1 CDS prs NC_003366.1 1816133 1817227 D Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 1816133..1817227 Clostridium perfringens str. 13 989859 NP_562466.1 CDS CPE1550 NC_003366.1 1817277 1818338 R no significant homology; hypothetical protein complement(1817277..1818338) Clostridium perfringens str. 13 989860 NP_562467.1 CDS CPE1551 NC_003366.1 1818549 1819538 R similar to pir:F69829 endo-1,4-beta-xylanase homolog yheN from Bacillus subtilis (282 aa); 31.9% identity in 226 aa overlap. N-terminal signal sequence was found by PSORT; endo-1,4-beta-xylanase complement(1818549..1819538) Clostridium perfringens str. 13 989861 NP_562468.1 CDS pulA NC_003366.1 1819759 1821726 R similar to gp:BTU67061_1 pullulanase from Bacteroides thetaiotaomicron (668 aa); 45.2% identity in 615 aa overlap; pullulanase complement(1819759..1821726) Clostridium perfringens str. 13 989862 NP_562469.1 CDS sipS NC_003366.1 1821902 1822438 D similar to sp:LEPC_BACCL SIGNAL PEPTIDASE I (EC 3.4.21.89) (SPASE I) (LEADER PEPTIDASE I) from Bacillus caldolyticus (182 aa); 47.3% identity in 129 aa overlap. N-terminal signal sequence was found by PSORT; signal peptidase I 1821902..1822438 Clostridium perfringens str. 13 989863 NP_562470.1 CDS CPE1554 NC_003366.1 1822494 1823339 R no significant homology; lipoprotein complement(1822494..1823339) Clostridium perfringens str. 13 989864 NP_562471.1 CDS CPE1555 NC_003366.1 1823448 1823717 R no significant homology; hypothetical protein complement(1823448..1823717) Clostridium perfringens str. 13 989865 NP_562472.1 CDS CPE1556 NC_003366.1 1823828 1825843 R partially similar to sp:CGMA_RHIME CYCLIC BETA-1,2-GLUCAN MODIFICATION PROTEIN from Rhizobium melioti (639 aa); 30.8% identity in 383 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein complement(1823828..1825843) Clostridium perfringens str. 13 989866 NP_562473.1 CDS CPE1557 NC_003366.1 1826145 1827095 R similar to gpu:AP001512_51 BH1464 gene product from Bacillus halodurans (326 aa); 29.7% identity in 313 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein complement(1826145..1827095) Clostridium perfringens str. 13 989867 NP_562474.1 CDS CPE1558 NC_003366.1 1827243 1827884 D similar to pir:G72259 probable di-trans,poly-cis-decaprenylcistransferase (EC 2.5.1.31) from Thermotoga maritima (strain MSB8) (233 aa); 33.8% identity in 213 aa overlap; di-trans, poly-cis-decaprenylcistransferase 1827243..1827884 Clostridium perfringens str. 13 989868 NP_562475.1 CDS CPE1559 NC_003366.1 1827889 1829388 D similar to pir:T31463 probable diapophytoene dehydrogenase crtN from Heliobacillus mobilis (517 aa); 31% identity in 480 aa overlap. N-terminal signal sequence was found by PSORT; diapophytoene dehydrogenase 1827889..1829388 Clostridium perfringens str. 13 989869 NP_562476.1 CDS CPE1560 NC_003366.1 1829419 1831110 R similar to sp:YK27_AQUAE HYPOTHETICAL PROTEIN AQ_2027 from Aquifex aeolicus (364 aa); 47.9% identity in 165 aa overlap. 5 transmembrane regions were found by PSORT.; diguanylate cyclase complement(1829419..1831110) Clostridium perfringens str. 13 989870 NP_562477.1 CDS CPE1561 NC_003366.1 1831325 1831969 R no significant homology 5 transmembrane regions were found by PSORT.; hypothetical protein complement(1831325..1831969) Clostridium perfringens str. 13 989871 NP_562478.1 CDS CPE1562 NC_003366.1 1831971 1832480 R no significant homology 4 transmembrane regions were found by PSORT.; hypothetical protein complement(1831971..1832480) Clostridium perfringens str. 13 989872 NP_562479.1 CDS CPE1563 NC_003366.1 1832449 1833015 R no significant homology N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(1832449..1833015) Clostridium perfringens str. 13 989873 NP_562480.1 CDS CPE1564 NC_003366.1 1833167 1833727 R similar to gpu:AP001515_27 BH2293 gene product from Bacillus halodurans (212 aa); 30.2% identity in 129 aa overlap. ATA start. 5 transmembrane regions were found by PSORT.; hypothetical protein complement(1833167..1833727) Clostridium perfringens str. 13 989874 NP_562481.1 CDS CPE1565 NC_003366.1 1833988 1834983 R similar to gpu:AP001508_188 BH0465 gene product from Bacillus halodurans (318 aa); 38.7% identity in 331 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein complement(1833988..1834983) Clostridium perfringens str. 13 989875 NP_562482.1 CDS dinP NC_003366.1 1835113 1836192 R similar to gpu:AE004300_1 DNA-damage-inducible protein P from Vibrio cholerae (360 aa); 40.8% identity in 336 aa overlap; DNA polymerase IV complement(1835113..1836192) Clostridium perfringens str. 13 989876 NP_562483.1 CDS ppiB NC_003366.1 1836335 1836967 R similar to sp:CYPB_BACSU PEPTIDYL-PROLYL CIS-TRANS ISOMERASE B (EC 5.2.1.8) (PPIASE B) (ROTAMASE B) from Bacillus subtilis (143 aa); 51.3% identity in 117 aa overlap; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(1836335..1836967) Clostridium perfringens str. 13 989877 NP_562484.1 CDS CPE1568 NC_003366.1 1837145 1837549 R no significant homology; hypothetical protein complement(1837145..1837549) Clostridium perfringens str. 13 989878 NP_562485.1 CDS CPE1569 NC_003366.1 1837666 1838496 R similar to gpu:AP001508_220 BH0497 gene product from Bacillus halodurans (247 aa); 30.7% identity in 274 aa overlap; HAD hydrolase complement(1837666..1838496) Clostridium perfringens str. 13 989879 NP_562486.1 CDS CPE1570 NC_003366.1 1838800 1839513 R similar to sp:IM30_PEA CHLOROPLAST MEMBRANE-ASSOCIATED 30 KDA PROTEIN PRECURSOR (M30) from Pisum sativum (323 aa); 24.6% identity in 240 aa overlap. Also similar to many phage shock proteins; phage shock protein A complement(1838800..1839513) Clostridium perfringens str. 13 989880 NP_562487.1 CDS CPE1571 NC_003366.1 1839598 1840299 R no significant homology 1 transmembrane region was found by PSORT; lipoprotein complement(1839598..1840299) Clostridium perfringens str. 13 989881 NP_562488.1 CDS CPE1572 NC_003366.1 1840447 1841112 D no significant homology; hypothetical protein 1840447..1841112 Clostridium perfringens str. 13 989882 NP_562489.1 CDS CPE1573 NC_003366.1 1841356 1843692 R Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; bifunctional glutamate--cysteine ligase/glutathione synthetase complement(1841356..1843692) Clostridium perfringens str. 13 989883 NP_562490.1 CDS CPE1574 NC_003366.1 1844089 1845006 R partially similar to pir:E71657 hypothetical protein RP534 from Rickettsia prowazekii (598 aa); 28.3% identity in 173 aa overlap; hypothetical protein complement(1844089..1845006) Clostridium perfringens str. 13 989884 NP_562491.1 CDS CPE1575 NC_003366.1 1845153 1846442 R similar to gpu:AE004299_6 conserved hypothetical protein from Vibrio cholerae (430 aa); 43% identity in 430 aa overlap. 12 transmembrane regions were found by PSORT.; hypothetical protein complement(1845153..1846442) Clostridium perfringens str. 13 989885 NP_562492.1 CDS CPE1576 NC_003366.1 1846695 1847063 R similar to pir:H72254 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (131 aa); 34.8% identity in 112 aa overlap; hypothetical protein complement(1846695..1847063) Clostridium perfringens str. 13 989886 NP_562493.1 CDS CPE1577 NC_003366.1 1847265 1848218 R similar to pir:F70009 conserved hypothetical protein yufQ from Bacillus subtilis (319 aa); 42.8% identity in 152 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; permease; ABC transporter complement(1847265..1848218) Clostridium perfringens str. 13 989887 NP_562494.1 CDS CPE1578 NC_003366.1 1848218 1849315 R similar to gpu:CST276209_12 permease 1 of an ABC transporter from Clostridium sticklandii (354 aa); 43% identity in 316 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permease; ABC transporter complement(1848218..1849315) Clostridium perfringens str. 13 989888 NP_562495.1 CDS CPE1579 NC_003366.1 1849305 1850840 R similar to pir:D70009 probable ABC transporter yufO from Bacillus subtilis (510 aa); 61.8% identity in 502 aa overlap; ATP-binding protein; ABC transporter complement(1849305..1850840) Clostridium perfringens str. 13 989889 NP_562496.1 CDS CPE1580 NC_003366.1 1850981 1852093 R similar to sp:TMPC_TREPA MEMBRANE LIPOPROTEIN TMPC PRECURSOR (MEMBRANE PROTEIN C) (35 KDA ANTIGEN) from Treponema pallidum (353 aa); 37.5% identity in 333 aa overlap. 1 transmembrane region was found by PSORT; membrane lipoprotein TmpC complement(1850981..1852093) Clostridium perfringens str. 13 989890 NP_562497.1 CDS CPE1581 NC_003366.1 1852647 1853468 R partially similar to pir:C75472 probable lipase from Deinococcus radiodurans (strain R1) (454 aa); 26.9% identity in 216 aa overlap.Also similar to pir:T43794 probable lipase lipA from Clostridium perfringens; lipase complement(1852647..1853468) Clostridium perfringens str. 13 989891 NP_562498.1 CDS CPE1582 NC_003366.1 1853950 1854771 R partially similar to pir:F75200 hypothetical protein PAB2261 from Pyrococcus abyssi (strain Orsay) (248 aa); 31.5% identity in 127 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein complement(1853950..1854771) Clostridium perfringens str. 13 989892 NP_562499.1 CDS CPE1583 NC_003366.1 1854780 1856486 R similar to pir:H69858 cation ABC transporter (ATP-binding protein) homolog ykoD from Bacillus subtilis (490 aa); 31.6% identity in 488 aa overlap. 1 transmembrane region was found by PSORT; ATP-binding protein; ABC transporter complement(1854780..1856486) Clostridium perfringens str. 13 989893 NP_562500.1 CDS CPE1584 NC_003366.1 1856632 1857189 R similar to gp:LLA012388_6 hypothetical protein from Lactococcus lactis (182 aa); 51.1% identity in 184 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein complement(1856632..1857189) Clostridium perfringens str. 13 989894 NP_562501.1 CDS CPE1585 NC_003366.1 1857409 1857861 D similar to pir:T44113 conserved hypothetical protein from Staphylococcus aureus (131 aa); 48.1% identity in 77 aa overlap. N-terminal signal sequence was found by PSORT; rhodanese domain-containing protein 1857409..1857861 Clostridium perfringens str. 13 989895 NP_562502.1 CDS CPE1586 NC_003366.1 1857907 1858230 R no significant homology; hypothetical protein complement(1857907..1858230) Clostridium perfringens str. 13 989896 NP_562503.1 CDS pulB NC_003366.1 1858372 1861566 R similar to sp:PULA_THEMA PULLULANASE PRECURSOR (EC 3.2.1.41) (ALPHA-DEXTRIN ENDO-1,6-ALPHA- GLUCOSIDASE) (PULLULAN 6-GLUCANOHYDROLASE) from Thermotoga maritima (strain MSB8) (843 aa); 37.1% identity in 832 aa overlap; pullulanase complement(1858372..1861566) Clostridium perfringens str. 13 989897 NP_562504.1 CDS glgB NC_003366.1 1861666 1863660 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(1861666..1863660) Clostridium perfringens str. 13 989898 NP_562505.1 CDS CPE1589 NC_003366.1 1863740 1864447 R similar to sp:YYBI_BACSU HYPOTHETICAL 30.1 KDA PROTEIN IN COTF-TETB INTERGENIC REGION from Bacillus subtilis (262 aa); 33.3% identity in 132 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein complement(1863740..1864447) Clostridium perfringens str. 13 989899 NP_562506.1 CDS CPE1590 NC_003366.1 1864689 1865459 D similar to gpu:AP001507_81 BH0081 gene product from Bacillus halodurans (251 aa); 31.3% identity in 217 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 1864689..1865459 Clostridium perfringens str. 13 989900 NP_562507.1 CDS CPE1591 NC_003366.1 1865456 1865947 D similar to gpu:AP001507_82 BH0082 from Bacillus halodurans (150 aa); 34.1% identity in 135 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 1865456..1865947 Clostridium perfringens str. 13 989901 NP_562508.1 CDS CPE1592 NC_003366.1 1866140 1866907 R partially similar to prf:2117382A alpha toxin from Clostridium novyi (2178 aa); 25.4% identity in 197 aa overlap; hypothetical protein complement(1866140..1866907) Clostridium perfringens str. 13 989902 NP_562509.1 CDS CPE1593 NC_003366.1 1867256 1868683 R similar to gp:D85082_8 YfiX from Bacillus subtilis (610 aa); 34.9% identity in 476 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein complement(1867256..1868683) Clostridium perfringens str. 13 989903 NP_562510.1 CDS CPE1594 NC_003366.1 1868755 1868967 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(1868755..1868967) Clostridium perfringens str. 13 989904 NP_562511.1 CDS CPE1595 NC_003366.1 1869140 1869463 R similar to pir:G69781 thioredoxin homolog ydfQ from Bacillus subtilis (112 aa); 31% identity in 84 aa overlap. 1 transmembrane region was found by PSORT; thioredoxin complement(1869140..1869463) Clostridium perfringens str. 13 989905 NP_562512.1 CDS CPE1596 NC_003366.1 1869559 1870518 R similar to >pir:S41858 hypothetical protein from Thermoanaerobacterium saccharolyticum (320 aa); 48.8% identity in 303 aa overlap; acetylxylan esterase complement(1869559..1870518) Clostridium perfringens str. 13 989906 NP_562513.1 CDS CPE1597 NC_003366.1 1870960 1871823 D similar to gpu:AP001520_185 BH3961 gene product from Bacillus halodurans (295 aa); 32.8% identity in 247 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1870960..1871823 Clostridium perfringens str. 13 989907 NP_562514.1 CDS CPE1598 NC_003366.1 1871906 1872334 R no significant homology; hypothetical protein complement(1871906..1872334) Clostridium perfringens str. 13 989908 NP_562515.1 CDS thiE NC_003366.1 1872446 1873027 R similar to pir:D75087 thiamin phosphate pyrophosphorylase (thie) PAB1645 from Pyrococcus abyssi (strain Orsay) (207 aa); 30.6% identity in 193 aa overlap; thiamine monophosphate synthase complement(1872446..1873027) Clostridium perfringens str. 13 989909 NP_562516.1 CDS thiH NC_003366.1 1873057 1874160 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH complement(1873057..1874160) Clostridium perfringens str. 13 989910 NP_562517.1 CDS thiG NC_003366.1 1874173 1874937 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(1874173..1874937) Clostridium perfringens str. 13 989911 NP_562518.1 CDS CPE1602 NC_003366.1 1875061 1875870 R catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF complement(1875061..1875870) Clostridium perfringens str. 13 989912 NP_562519.1 CDS CPE1603 NC_003366.1 1875946 1876140 R similar to pir:C69845 hypothetical protein yjbS from Bacillus subtilis (66 aa); 50% identity in 62 aa overlap; thiamine biosynthesis protein ThiS complement(1875946..1876140) Clostridium perfringens str. 13 989913 NP_562520.1 CDS CPE1604 NC_003366.1 1876416 1878116 R similar to pir:G69804 multidrug-efflux transporter homolog yfiU from Bacillus subtilis (518 aa); 36.9% identity in 425 aa overlap. N-terminal signal sequence and 12 transmembrane regions were found by PSORT.; major facilitator family transporter complement(1876416..1878116) Clostridium perfringens str. 13 989914 NP_562521.1 CDS CPE1605 NC_003366.1 1878452 1879261 R similar to pir:C59107 hypothetical protein pXO1-131 from Bacillus anthracis virulence plasmid pXO1 (349 aa); 40.2% identity in 266 aa overlap; GTP pyrophosphokinase complement(1878452..1879261) Clostridium perfringens str. 13 989915 NP_562522.1 CDS CPE1606 NC_003366.1 1879313 1879612 R no significant homology; hypothetical protein complement(1879313..1879612) Clostridium perfringens str. 13 989916 NP_562523.1 CDS CPE1607 NC_003366.1 1879670 1880113 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(1879670..1880113) Clostridium perfringens str. 13 989917 NP_562524.1 CDS CPE1608 NC_003366.1 1880189 1880836 R similar to gp:AF117259_1 replication protein from Staphylococcus aureus (303 aa); 27.2% identity in 103 aa overlap; hypothetical protein complement(1880189..1880836) Clostridium perfringens str. 13 989918 NP_562525.1 CDS CPE1609 NC_003366.1 1880986 1881285 D no significant homology; hypothetical protein 1880986..1881285 Clostridium perfringens str. 13 989919 NP_562526.1 CDS CPE1610 NC_003366.1 1881329 1882312 R similar to pir:F69829 endo-1,4-beta-xylanase homolog yheN from Bacillus subtilis (282 aa); 31.6% identity in 231 aa overlap. N-terminal signal sequence was found by PSORT; endo-1,4-beta-xylanase complement(1881329..1882312) Clostridium perfringens str. 13 989920 NP_562527.1 CDS CPE1611 NC_003366.1 1882553 1882822 R no significant homology N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(1882553..1882822) Clostridium perfringens str. 13 989921 NP_562528.1 CDS CPE1612 NC_003366.1 1882925 1883578 D similar to sp:YTXB_BACSU HYPOTHETICAL 23.3 KDA PROTEIN IN DNAI-THRS INTERGENIC REGION (ORF-213) from Bacillus subtilis (213 aa); 23.2% identity in 151 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; hypothetical protein 1882925..1883578 Clostridium perfringens str. 13 989922 NP_562529.1 CDS CPE1613 NC_003366.1 1883647 1884012 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(1883647..1884012) Clostridium perfringens str. 13 989923 NP_562530.1 CDS CPE1614 NC_003366.1 1884141 1885466 R similar to gpu:AP001519_115 cell wall-binding protein from Bacillus halodurans (461 aa); 27.3% identity in 429 aa overlap. N-terminal signal sequence was found by PSORT; cell wall-binding protein complement(1884141..1885466) Clostridium perfringens str. 13 989924 NP_562531.1 CDS CPE1615 NC_003366.1 1885709 1885927 R no significant homology; hypothetical protein complement(1885709..1885927) Clostridium perfringens str. 13 989925 NP_562532.1 CDS CPE1616 NC_003366.1 1886074 1886262 D no significant homology; hypothetical protein 1886074..1886262 Clostridium perfringens str. 13 989926 NP_562533.1 CDS CPE1617 NC_003366.1 1886615 1887010 R no significant homology; hypothetical protein complement(1886615..1887010) Clostridium perfringens str. 13 989927 NP_562534.1 CDS CPE1618 NC_003366.1 1887026 1887283 R no significant homology; hypothetical protein complement(1887026..1887283) Clostridium perfringens str. 13 989928 NP_562535.1 CDS CPE1619 NC_003366.1 1887300 1889591 R similar to pir:H70040 hypothetical protein yvgS from Bacillus subtilis (774 aa); 29.9% identity in 699 aa overlap; ATP-dependent DNA helicase, UvrD/REP family complement(1887300..1889591) Clostridium perfringens str. 13 989929 NP_562536.1 CDS CPE1620 NC_003366.1 1890116 1890586 D no significant homology; hypothetical protein 1890116..1890586 Clostridium perfringens str. 13 989930 NP_562537.1 CDS CPE1621 NC_003366.1 1890669 1891475 R similar to gpu:AP001508_150 BH0427 gene product from Bacillus haloduran (301 aa); 36.9% identity in 268 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein complement(1890669..1891475) Clostridium perfringens str. 13 989931 NP_562538.1 CDS CPE1622 NC_003366.1 1891744 1892739 R similar to sp:YYBI_BACSU HYPOTHETICAL 30.1 KDA PROTEIN IN COTF-TETB INTERGENIC REGION from Bacillus subtilis (262 aa); 27.3% identity in 227 aa overlap; hypothetical protein complement(1891744..1892739) Clostridium perfringens str. 13 989932 NP_562539.1 CDS CPE1623 NC_003366.1 1892881 1893546 D no significant homology 1 transmembrane region was found by PSORT; lipoprotein 1892881..1893546 Clostridium perfringens str. 13 989933 NP_562540.1 CDS CPE1624 NC_003366.1 1893868 1895793 D partially similar to gp:KPN250891_3 virulence protein Q from Klebsiella pneumoniae (328 aa); 27.1% identity in 118 aa overlap. 9 transmembrane regions were found by PSORT.; hypothetical protein 1893868..1895793 Clostridium perfringens str. 13 989934 NP_562541.1 CDS CPE1625 NC_003366.1 1896218 1899472 R similar to prf:2516401B SNF gene from Bacillus cereus (1064 aa); 34.4% identity in 868 aa overlap; helicase, SNF2/RAD54 family complement(1896218..1899472) Clostridium perfringens str. 13 989935 NP_562542.1 CDS CPE1626 NC_003366.1 1899839 1900825 R similar to gpu:AP001519_242 transcriptional repressor of the ribose operon from Bacillus halodurans (331 aa); 38.1% identity in 310 aa overlap. 1 transmembrane region was found by PSORT; LacI family; transcriptional regulator complement(1899839..1900825) Clostridium perfringens str. 13 989936 NP_562543.1 CDS rbsB NC_003366.1 1900964 1901404 R similar to sp:RBSB_BACSU D-RIBOSE-BINDING PROTEIN PRECURSOR from Bacillus subtilis (305 aa); 55.7% identity in 131 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing); ribose ABC transporter complement(1900964..1901404) Clostridium perfringens str. 13 989937 NP_562544.1 CDS CPE1628 NC_003366.1 1901337 1901876 R similar to sp:RBSB_ECOLI D-RIBOSE-BINDING PERIPLASMIC PROTEIN PRECURSOR from Escherichia coli (296 aa); 56.6% identity in 166 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing). N-terminal signal sequence was found by PSORT; ribose ABC transporter complement(1901337..1901876) Clostridium perfringens str. 13 989938 NP_562545.1 CDS rbsC NC_003366.1 1901898 1902833 R similar to gpu:AE004354_5 ribose ABC transporter, permease from Vibrio cholerae (332 aa); 45.4% identity in 295 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; ribose ABC transporter complement(1901898..1902833) Clostridium perfringens str. 13 989939 NP_562546.1 CDS rbsA NC_003366.1 1902847 1904352 R similar to gp:ECOUW82_115 high affinity ribose transport protein from Escherichia coli (501 aa); 52.2% identity in 492 aa overlap; ATP-binding protein; ribose ABC transporter complement(1902847..1904352) Clostridium perfringens str. 13 989940 NP_562547.1 CDS rbsD NC_003366.1 1904439 1904834 R cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase complement(1904439..1904834) Clostridium perfringens str. 13 989941 NP_562548.1 CDS rbsK NC_003366.1 1904837 1905769 R similar to gp:AF115391_7 ribokinase RbsK (EC 2.7.1.15) from Lactobacillus sakei (302 aa); 48% identity in 302 aa overlap; ribokinase complement(1904837..1905769) Clostridium perfringens str. 13 989942 NP_562549.1 CDS def NC_003366.1 1905910 1906377 R similar to sp:DEF_CLOAB POLYPEPTIDE DEFORMYLASE (EC 3.5.1.31) (PDF) (FORMYLMETHIONINE DEFORMYLASE) from Clostridium acetobutylicum (150 aa); 45.9% identity in 148 aa overlap; formylmethionine deformylase; polypeptide deformylase complement(1905910..1906377) Clostridium perfringens str. 13 989943 NP_562550.1 CDS tagO NC_003366.1 1906533 1907492 R similar to pir:B69721 teichoic acid linkage unit synthesis tagO from Bacillus subtilis (358 aa); 35.1% identity in 305 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; undecaprenyl-phosphate N-acetylglucosaminyltransferase complement(1906533..1907492) Clostridium perfringens str. 13 989944 NP_562551.1 CDS CPE1635 NC_003366.1 1907638 1908204 R similar to gpu:AP001508_15 BH0292 gene product from Bacillus halodurans (177 aa); 35.7% identity in 84 aa overlap; ArsR family; transcriptional regulator complement(1907638..1908204) Clostridium perfringens str. 13 989945 NP_562552.1 CDS ntpD NC_003366.1 1908420 1909064 R produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D complement(1908420..1909064) Clostridium perfringens str. 13 989946 NP_562553.1 CDS ntpB NC_003366.1 1909067 1910449 R produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B complement(1909067..1910449) Clostridium perfringens str. 13 989947 NP_562554.1 CDS ntpA NC_003366.1 1910442 1912217 R produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A complement(1910442..1912217) Clostridium perfringens str. 13 989948 NP_562555.1 CDS ntpF NC_003366.1 1912234 1912551 R produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit F complement(1912234..1912551) Clostridium perfringens str. 13 989949 NP_562556.1 CDS ntpC NC_003366.1 1912538 1913545 R produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit C complement(1912538..1913545) Clostridium perfringens str. 13 989950 NP_562557.1 CDS ntpE NC_003366.1 1913558 1914154 R similar to sp:ATPE_METJA ATP SYNTHASE, SUBUNIT E (EC 3.6.1.34).>pir:E64327 H+-transporting ATP synthase (EC 3.6.1.34) subunit E from Methanococcus jannaschii (206 aa); 34% identity in 197 aa overlap; V-type ATPase, E subunit complement(1913558..1914154) Clostridium perfringens str. 13 989951 NP_562558.1 CDS ntpK NC_003366.1 1914185 1914679 R produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K complement(1914185..1914679) Clostridium perfringens str. 13 989952 NP_562559.1 CDS ntpI NC_003366.1 1914734 1916680 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I complement(1914734..1916680) Clostridium perfringens str. 13 989953 NP_562560.1 CDS CPE1644 NC_003366.1 1916667 1916993 R similar to sp:Y223_METJA HYPOTHETICAL PROTEIN MJ0223 from Methanococcus jannaschii (104 aa); 39.8% identity in 88 aa overlap; hypothetical protein complement(1916667..1916993) Clostridium perfringens str. 13 989954 NP_562561.1 CDS CPE1645 NC_003366.1 1917270 1918949 R similar to gpu:AP001517_74 Mg-protoporphyrin IX monomethyl ester oxidative cyclas from Bacillus halodurans (592 aa); 39.4% identity in 503 aa overlap; radical SAM domain-containing protein complement(1917270..1918949) Clostridium perfringens str. 13 989955 NP_562562.1 CDS CPE1646 NC_003366.1 1918849 1919451 R no significant homology; hypothetical protein complement(1918849..1919451) Clostridium perfringens str. 13 989956 NP_562563.1 CDS CPE1647 NC_003366.1 1919598 1920884 R partially similar to gp:AF226444_1 lipoprotein GNA2132 from Neisseria meningitidis (486 aa); 27.5% identity in 204 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein complement(1919598..1920884) Clostridium perfringens str. 13 989957 NP_562564.1 CDS spoVB NC_003366.1 1921032 1922561 D similar to sp:SP5B_BACSU STAGE V SPORULATION PROTEIN B from Bacillus subtilis (518 aa); 23.9% identity in 493 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; stage V sporulation protein B 1921032..1922561 Clostridium perfringens str. 13 989958 NP_562565.1 CDS CPE1649 NC_003366.1 1922655 1923455 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(1922655..1923455) Clostridium perfringens str. 13 989959 NP_562566.1 CDS CPE1650 NC_003366.1 1923565 1924407 R similar to gpu:AE004229_1 conserved hypothetical protein from Vibrio cholera (298 aa); 34.9% identity in 281 aa overlap; hypothetical protein complement(1923565..1924407) Clostridium perfringens str. 13 989960 NP_562567.1 CDS CPE1651 NC_003366.1 1924419 1924922 R similar to pir:G70443 conserved hypothetical protein aq_1660 from Aquifex aeolicus (172 aa); 49.4% identity in 162 aa overlap; hypothetical protein complement(1924419..1924922) Clostridium perfringens str. 13 989961 NP_562568.1 CDS CPE1652 NC_003366.1 1925171 1926172 D partially similar to pir:H72357 hypothetical protein TM0599 from Thermotoga maritima (strain MSB8) (546 aa); 32% identity in 275 aa overlap; hypothetical protein 1925171..1926172 Clostridium perfringens str. 13 989962 NP_562569.1 CDS CPE1653 NC_003366.1 1926200 1926550 R no significant homology N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(1926200..1926550) Clostridium perfringens str. 13 989963 NP_562570.1 CDS CPE1654 NC_003366.1 1926770 1927240 D similar to gpu:AE004098_5 transcriptional regulator AsnC from Vibrio cholerae (153 aa); 46.6% identity in 131 aa overlap; AsnC family; AsnC family transcriptional regulator 1926770..1927240 Clostridium perfringens str. 13 989964 NP_562571.1 CDS CPE1655 NC_003366.1 1927347 1927550 D similar to gpu:AP001518_176 BH3345 gene product from Bacillus halodurans (75 aa); 59.6% identity in 57 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1927347..1927550 Clostridium perfringens str. 13 989965 NP_562572.1 CDS CPE1656 NC_003366.1 1927598 1929343 R partially similar to sp:PPCK_ECOLI PHOSPHOENOLPYRUVATE CARBOXYKINASE [ATP] (EC 4.1.1.49) from Escherichia coli (540 aa); 30.4% identity in 194 aa overlap; hypothetical protein complement(1927598..1929343) Clostridium perfringens str. 13 989966 NP_562573.1 CDS comEC NC_003366.1 1929544 1930398 D similar to pir:T44344 late competence protein homolog comEC from Bacillus halodurans (266 aa); 33.5% identity in 242 aa overlap. N-terminal signal sequence was found by PSORT; late competence protein 1929544..1930398 Clostridium perfringens str. 13 989967 NP_562574.1 CDS CPE1658 NC_003366.1 1930455 1931138 R no significant homology; hypothetical protein complement(1930455..1931138) Clostridium perfringens str. 13 989968 NP_562575.1 CDS feoA NC_003366.1 1931324 1931542 D similar to gpu:AE004281_9 ferrous iron transport protein A from Vibrio cholerae (76 aa); 40.6% identity in 69 aa overlap; ferrous iron transport protein A 1931324..1931542 Clostridium perfringens str. 13 989969 NP_562576.1 CDS feoB NC_003366.1 1931580 1933343 D similar to pir:C69549 iron (II) transporter (feoB-2) homolog from Archaeoglobus fulgidus (563 aa); 38.9% identity in 579 aa overlap. 7 transmembrane regions were found by PSORT.; ferrous iron transport protein B 1931580..1933343 Clostridium perfringens str. 13 989970 NP_562577.1 CDS argS NC_003366.1 1933553 1935250 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(1933553..1935250) Clostridium perfringens str. 13 989971 NP_562578.1 CDS CPE1662 NC_003366.1 1935732 1937240 D similar to gpu:AP001511_282 exopolyphosphatase from Bacillus halodurans (518 aa); 25.9% identity in 495 aa overlap; Ppx/GppA phosphatase 1935732..1937240 Clostridium perfringens str. 13 989972 NP_562579.1 CDS CPE1663 NC_003366.1 1937338 1938552 R similar to gp:SCM10_29 lipoprotein from Streptomyces coelicolor A3(2) (384 aa); 29.7% identity in 256 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(1937338..1938552) Clostridium perfringens str. 13 989973 NP_562580.1 CDS CPE1664 NC_003366.1 1938718 1939338 R similar to pir:D70057 conserved hypothetical protein ywhC from Bacillus subtilis (219 aa); 38.7% identity in 155 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; M50 family peptidase complement(1938718..1939338) Clostridium perfringens str. 13 989974 NP_562581.1 CDS CPE1665 NC_003366.1 1939543 1940922 R similar to pir:A69873 phosphate starvation inducible protein homolog ylaK from Bacillus subtilis (442 aa); 42% identity in 459 aa overlap; PhoH family protein complement(1939543..1940922) Clostridium perfringens str. 13 989975 NP_562582.1 CDS CPE1666 NC_003366.1 1941144 1941758 D partially similar to gp:AE002349_1 DNA polymerase III, epsilon subunit, from Chlamydia muridarum (250 aa); 31.5% identity in 111 aa overlap; hypothetical protein 1941144..1941758 Clostridium perfringens str. 13 989976 NP_562583.1 CDS CPE1667 NC_003366.1 1941795 1942124 R similar to gp:AE002154_2 single-strand binding protein from Ureaplasma urealyticum (166 aa); 25.7% identity in 105 aa overlap; single-strand binding protein complement(1941795..1942124) Clostridium perfringens str. 13 989977 NP_562584.1 CDS purB NC_003366.1 1942405 1943835 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1942405..1943835) Clostridium perfringens str. 13 989978 NP_562585.1 CDS hpr NC_003366.1 1944078 1944338 R similar to sp:PTHP_STAAU PHOSPHOCARRIER PROTEIN HPR (HISTIDINE-CONTAINING PROTEIN) from Staphylococcus aureus (88 aa); 56.5% identity in 69 aa overlap; phosphocarrier protein complement(1944078..1944338) Clostridium perfringens str. 13 989979 NP_562586.1 CDS aspC NC_003366.1 1944433 1945626 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(1944433..1945626) Clostridium perfringens str. 13 989980 NP_562587.1 CDS spoVS NC_003366.1 1945779 1946039 R similar to >gpu:AP001515_109 stage V sporulation protein S from Bacillus halodurans (86 aa); 81.4% identity in 86 aa overlap. N-terminal signal sequence was found by PSORT; stage V sporulation protein S complement(1945779..1946039) Clostridium perfringens str. 13 989981 NP_562588.1 CDS CPE1672 NC_003366.1 1946257 1947849 R protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase complement(1946257..1947849) Clostridium perfringens str. 13 989982 NP_562589.1 CDS recA NC_003366.1 1948140 1949198 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(1948140..1949198) Clostridium perfringens str. 13 989983 NP_562590.1 CDS CPE1674 NC_003366.1 1949334 1949924 R similar to gpu:AP001515_120 phosphatidylglycerophosphate synthase from Bacillus halodurans (192 aa); 46.4% identity in 192 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(1949334..1949924) Clostridium perfringens str. 13 989984 NP_562591.1 CDS CPE1675 NC_003366.1 1949908 1951245 R similar to sp:Y849_AQUAE HYPOTHETICAL PROTEIN AQ_849 from Aquifex aeolicus (432 aa); 46% identity in 433 aa overlap; hypothetical protein complement(1949908..1951245) Clostridium perfringens str. 13 989985 NP_562592.1 CDS spoIIIE NC_003366.1 1951314 1953704 R similar to gp:AF177859_1 sporulation protein SpoIIIE from Sporosarcina ureae (780 aa); 44.4% identity in 768 aa overlap. 6 transmembrane regions were found by PSORT.; DNA translocase FtsK complement(1951314..1953704) Clostridium perfringens str. 13 989986 NP_562593.1 CDS CPE1677 NC_003366.1 1953836 1954579 R similar to gpu:AP001515_131 BH2397 gene product from Bacillus halodurans (256 aa); 59.7% identity in 196 aa overlap; Clp protease complement(1953836..1954579) Clostridium perfringens str. 13 989987 NP_562594.1 CDS dapG NC_003366.1 1954579 1955775 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase complement(1954579..1955775) Clostridium perfringens str. 13 989988 NP_562595.1 CDS CPE1679 NC_003366.1 1955789 1956064 R similar to gpu:AP001515_138 BH2404 gene product from Bacillus halodurans (82 aa); 33.3% identity in 75 aa overlap; PRC-barrel domain-containing protein complement(1955789..1956064) Clostridium perfringens str. 13 989989 NP_562596.1 CDS pnpA NC_003366.1 1956198 1958306 R similar to pir:S70691 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) alpha chain pnpA from Bacillus subtilis (705 aa); 55% identity in 693 aa overlap. 1 transmembrane region was found by PSORT; polynucleotide phosphorylase complement(1956198..1958306) Clostridium perfringens str. 13 989990 NP_562597.1 CDS rpsO NC_003366.1 1958398 1958661 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(1958398..1958661) Clostridium perfringens str. 13 989991 NP_562598.1 CDS ribC NC_003366.1 1958777 1959706 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(1958777..1959706) Clostridium perfringens str. 13 989992 NP_562599.1 CDS truB NC_003366.1 1959710 1960594 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(1959710..1960594) Clostridium perfringens str. 13 989993 NP_562600.1 CDS CPE1684 NC_003366.1 1960598 1961551 R similar to pir:F70440 conserved hypothetical protein aq_1630 from Aquifex aeolicus (325 aa); 39.2% identity in 296 aa overlap; DHH subfamily 1 protein complement(1960598..1961551) Clostridium perfringens str. 13 989994 NP_562601.1 CDS rbfA NC_003366.1 1961555 1961905 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(1961555..1961905) Clostridium perfringens str. 13 989995 NP_562602.1 CDS infB NC_003366.1 1961927 1963966 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(1961927..1963966) Clostridium perfringens str. 13 989996 NP_562603.1 CDS CPE1687 NC_003366.1 1963997 1964299 R similar to sp:YLXQ_BACSU PROBABLE RIBOSOMAL PROTEIN IN NUSA-INFB INTERGENIC REGION (ORF4) from Bacillus subtilis (100 aa); 30.7% identity in 88 aa overlap; ribosomal protein L7Ae family protein complement(1963997..1964299) Clostridium perfringens str. 13 989997 NP_562604.1 CDS CPE1688 NC_003366.1 1964292 1964558 R similar to gpu:AP001515_149 BH2415 gene product from Bacillus halodurans (91 aa); 50% identity in 88 aa overlap; hypothetical protein complement(1964292..1964558) Clostridium perfringens str. 13 989998 NP_562605.1 CDS nusA NC_003366.1 1964586 1965686 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(1964586..1965686) Clostridium perfringens str. 13 989999 NP_562606.1 CDS CPE1690 NC_003366.1 1965706 1966170 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(1965706..1966170) Clostridium perfringens str. 13 990000 NP_562607.1 CDS polC NC_003366.1 1966403 1970752 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC complement(1966403..1970752) Clostridium perfringens str. 13 990001 NP_562608.1 CDS ispG NC_003366.1 1970830 1971879 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(1970830..1971879) Clostridium perfringens str. 13 990002 NP_562609.1 CDS CPE1693 NC_003366.1 1971899 1972906 R similar to sp:YI21_SYNY3 HYPOTHETICAL 39.0 KDA PROTEIN SLR1821 from Synechocystis sp. (366 aa); 34.7% identity in 291 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein complement(1971899..1972906) Clostridium perfringens str. 13 990003 NP_562610.1 CDS CPE1694 NC_003366.1 1972918 1974072 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(1972918..1974072) Clostridium perfringens str. 13 990004 NP_562611.1 CDS cdsA NC_003366.1 1974432 1975226 R similar to gpu:AP001515_156 phosphatidate cytidylyltransferase (EC 2.7.7.41) from Bacillus halodurans (264 aa); 34.7% identity in 239 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; phosphatidate cytidylyltransferase complement(1974432..1975226) Clostridium perfringens str. 13 990005 NP_562612.1 CDS uppS NC_003366.1 1975244 1976005 R catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase complement(1975244..1976005) Clostridium perfringens str. 13 990006 NP_562613.1 CDS frr NC_003366.1 1976070 1976627 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(1976070..1976627) Clostridium perfringens str. 13 990007 NP_562614.1 CDS pyrH NC_003366.1 1976641 1977354 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(1976641..1977354) Clostridium perfringens str. 13 990008 NP_562615.1 CDS tsf NC_003366.1 1977447 1978358 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(1977447..1978358) Clostridium perfringens str. 13 990009 NP_562616.1 CDS rpsB NC_003366.1 1978438 1979139 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(1978438..1979139) Clostridium perfringens str. 13 990010 NP_562617.1 CDS CPE1701 NC_003366.1 1979521 1980297 R CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY complement(1979521..1980297) Clostridium perfringens str. 13 990011 NP_562618.1 CDS topA NC_003366.1 1980439 1982541 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(1980439..1982541) Clostridium perfringens str. 13 990012 NP_562619.1 CDS smf NC_003366.1 1982586 1983668 R similar to gpu:AE004096_2 smf protein from Vibrio cholerae (371 aa); 39.3% identity in 275 aa overlap; DNA protecting protein DprA complement(1982586..1983668) Clostridium perfringens str. 13 990013 NP_562620.1 CDS comM NC_003366.1 1983669 1985192 R similar to pir:G72368 comM protein from Thermotoga maritima (strain MSB8) (501 aa); 45% identity in 467 aa overlap; Mg chelatase-like protein complement(1983669..1985192) Clostridium perfringens str. 13 990014 NP_562621.1 CDS CPE1705 NC_003366.1 1985322 1985690 D similar to pir:A82030 hypothetical protein NMA0341 from Neisseria meningitidis (group A strain Z2491) (115 aa); 28% identity in 100 aa overlap; hypothetical protein 1985322..1985690 Clostridium perfringens str. 13 990015 NP_562622.1 CDS rnhB NC_003366.1 1985691 1986509 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(1985691..1986509) Clostridium perfringens str. 13 990016 NP_562623.1 CDS rbgA NC_003366.1 1986525 1987370 R essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase complement(1986525..1987370) Clostridium perfringens str. 13 990017 NP_562624.1 CDS rplS NC_003366.1 1987517 1987864 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1987517..1987864) Clostridium perfringens str. 13 990018 NP_562625.1 CDS trmD NC_003366.1 1987985 1988695 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(1987985..1988695) Clostridium perfringens str. 13 990019 NP_562626.1 CDS rimM NC_003366.1 1988685 1989182 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(1988685..1989182) Clostridium perfringens str. 13 990020 NP_562627.1 CDS CPE1711 NC_003366.1 1989238 1989465 R similar to sp:Y696_BORBU HYPOTHETICAL PROTEIN BB0696 from Borrelia burgdorferi (82 aa); 55.3% identity in 76 aa overlap; hypothetical protein complement(1989238..1989465) Clostridium perfringens str. 13 990021 NP_562628.1 CDS rpsP NC_003366.1 1989509 1989754 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(1989509..1989754) Clostridium perfringens str. 13 990022 NP_562629.1 CDS ffh NC_003366.1 1989788 1991146 R similar to gpu:AP001515_218 signal recognition particle from Bacillus halodurans (451 aa); 56.4% identity in 443 aa overlap; signal recognition particle protein complement(1989788..1991146) Clostridium perfringens str. 13 990023 NP_562630.1 CDS CPE1714 NC_003366.1 1991158 1991496 R similar to gpu:AP001515_219 BH2485 gene product from Bacillus halodurans (109 aa); 43.8% identity in 96 aa overlap; DNA-binding protein complement(1991158..1991496) Clostridium perfringens str. 13 990024 NP_562631.1 CDS ftsY NC_003366.1 1991673 1992587 R similar to gpu:AP001515_220 signal recognition particle (docking protein) from Bacillus halodurans (330 aa); 48.5% identity in 297 aa overlap; signal recognition particle-docking protein FtsY complement(1991673..1992587) Clostridium perfringens str. 13 990025 NP_562632.1 CDS smc NC_003366.1 1992601 1996158 R similar to sp:SMC_BACSU CHROMOSOME PARTITION PROTEIN SMC from Bacillus subtilis (1186 aa); 35.5% identity in 1185 aa overlap; chromosome segregation protein SMC complement(1992601..1996158) Clostridium perfringens str. 13 990026 NP_562633.1 CDS CPE1717 NC_003366.1 1996363 1997436 R similar to pir:A72295 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (317 aa); 35.5% identity in 273 aa overlap; radical SAM domain-containing protein complement(1996363..1997436) Clostridium perfringens str. 13 990027 NP_562634.1 CDS rnc NC_003366.1 1997415 1998128 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(1997415..1998128) Clostridium perfringens str. 13 990028 NP_562635.1 CDS acpP NC_003366.1 1998227 1998457 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(1998227..1998457) Clostridium perfringens str. 13 990029 NP_562636.1 CDS plsX NC_003366.1 1998534 1999166 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(1998534..1999166) Clostridium perfringens str. 13 990030 NP_562637.1 CDS plsX NC_003366.1 1999139 1999504 R similar to sp|O65984|PLSX_CLOTS FATTY ACID/PHOSPHOLIPID SYNTHESIS PROTEIN PLSX from Thermoanaerobacterium thermosaccharolyticum (333 aa); 42.9% identity in 112 aa overlap. Probably truncated by frameshift mutation; fatty acid/phospholipid synthesis protein complement(1999139..1999504) Clostridium perfringens str. 13 990031 NP_562638.1 CDS rpmF NC_003366.1 1999613 1999795 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(1999613..1999795) Clostridium perfringens str. 13 990032 NP_562639.1 CDS CPE1723 NC_003366.1 1999811 2000206 R similar to prf:2220209C ORF X from Clostridium acetobutylicum (158 aa); 39.6% identity in 154 aa overlap; hypothetical protein complement(1999811..2000206) Clostridium perfringens str. 13 990033 NP_562640.1 CDS ackB NC_003366.1 2000425 2001621 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(2000425..2001621) Clostridium perfringens str. 13 990034 NP_562641.1 CDS eutD NC_003366.1 2001712 2002719 R in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase complement(2001712..2002719) Clostridium perfringens str. 13 990035 NP_562642.2 CDS CPE1726 NC_003366.1 2002948 2004156 D similar to pir:B69875 conserved hypothetical protein ylbM from Bacillus subtilis (415 aa); 37.7% identity in 382 aa overlap; hypothetical protein 2002948..2004156 Clostridium perfringens str. 13 990036 NP_562643.1 CDS CPE1727 NC_003366.1 2004221 2005381 D similar to pir:G69874 hypothetical protein ylbJ from Bacillus subtilis (408 aa); 24.7% identity in 320 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; hypothetical protein 2004221..2005381 Clostridium perfringens str. 13 990037 NP_562644.1 CDS CPE1728 NC_003366.1 2005364 2005894 R similar to pir:T44704 hypothetical protein MLCB1243.13 from Mycobacterium leprae (245 aa); 28% identity in 168 aa overlap; hypothetical protein complement(2005364..2005894) Clostridium perfringens str. 13 990038 NP_562645.1 CDS coaD NC_003366.1 2005903 2006397 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(2005903..2006397) Clostridium perfringens str. 13 990039 NP_562646.1 CDS CPE1730 NC_003366.1 2006399 2006956 R similar to gpu:AP001516_19 BH2590 gene product from Bacillus halodurans (189 aa); 35.3% identity in 184 aa overlap; hypothetical protein complement(2006399..2006956) Clostridium perfringens str. 13 990040 NP_562647.1 CDS recG NC_003366.1 2007021 2009093 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(2007021..2009093) Clostridium perfringens str. 13 990041 NP_562648.1 CDS CPE1732 NC_003366.1 2009246 2010892 R similar to pir:E69879 conserved hypothetical protein yloV from Bacillus subtilis (553 aa); 44.3% identity in 548 aa overlap; DAK2 domain-containing protein complement(2009246..2010892) Clostridium perfringens str. 13 990042 NP_562649.1 CDS CPE1733 NC_003366.1 2010906 2011253 R similar to pir:D69879 alkaline-shock protein homolog yloU from Bacillus subtilis (120 aa); 41.3% identity in 109 aa overlap; hypothetical protein complement(2010906..2011253) Clostridium perfringens str. 13 990043 NP_562650.1 CDS rpmB NC_003366.1 2011513 2011767 D similar to sp:R28A_STRCO 50S RIBOSOMAL PROTEIN L28- from Streptomyces coelicolor A3(2) (63 aa); 58.6% identity in 58 aa overlap; 50S ribosomal protein L28 2011513..2011767 Clostridium perfringens str. 13 990044 NP_562651.1 CDS CPE1735 NC_003366.1 2011946 2012575 R similar to pir:C69879 hypothetical protein yloS from Bacillus subtilis (214 aa); 34.6% identity in 205 aa overlap; thiamine pyrophosphokinase complement(2011946..2012575) Clostridium perfringens str. 13 990045 NP_562652.1 CDS CPE1736 NC_003366.1 2012577 2013230 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(2012577..2013230) Clostridium perfringens str. 13 990046 NP_562653.1 CDS CPE1737 NC_003366.1 2013230 2014093 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(2013230..2014093) Clostridium perfringens str. 13 990047 NP_562654.1 CDS CPE1738 NC_003366.1 2014330 2016387 R similar to pir:T35491 probable serine/threonine-specific protein kinase pkaF from Streptomyces coelicolor (667 aa); 29.8% identity in 580 aa overlap. 1 transmembrane region was found by PSORT; pobable serine/threonine protein kinase complement(2014330..2016387) Clostridium perfringens str. 13 990048 NP_562655.1 CDS CPE1739 NC_003366.1 2016389 2017108 R similar to gpu:AP001515_239 BH2505 gene product from Bacillus halodurans (249 aa); 40.6% identity in 229 aa overlap; protein phosphatase 2C complement(2016389..2017108) Clostridium perfringens str. 13 990049 NP_562656.1 CDS CPE1740 NC_003366.1 2017121 2018164 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(2017121..2018164) Clostridium perfringens str. 13 990050 NP_562657.1 CDS CPE1741 NC_003366.1 2018196 2019524 R similar to gpu:AP001515_241 BH2507 gene product from Bacillus halodurans (450 aa); 39.8% identity in 437 aa overlap; RNA-binding Sun protein complement(2018196..2019524) Clostridium perfringens str. 13 990051 NP_562658.1 CDS CPE1742 NC_003366.1 2019535 2020230 R similar to pir:H72244 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (230 aa); 50.7% identity in 221 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein complement(2019535..2020230) Clostridium perfringens str. 13 990052 NP_562659.1 CDS fmt NC_003366.1 2020248 2021177 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(2020248..2021177) Clostridium perfringens str. 13 990053 NP_562660.1 CDS def NC_003366.1 2021197 2021640 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(2021197..2021640) Clostridium perfringens str. 13 990054 NP_562661.1 CDS CPE1745 NC_003366.1 2021654 2023849 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(2021654..2023849) Clostridium perfringens str. 13 990055 NP_562662.1 CDS CPE1746 NC_003366.1 2023888 2025075 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(2023888..2025075) Clostridium perfringens str. 13 990056 NP_562663.1 CDS rpoZ NC_003366.1 2025081 2025293 R Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(2025081..2025293) Clostridium perfringens str. 13 990057 NP_562664.1 CDS gmk NC_003366.1 2025274 2025933 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(2025274..2025933) Clostridium perfringens str. 13 990058 NP_562665.1 CDS CPE1749 NC_003366.1 2025914 2026183 R similar to gpu:AP001515_247 BH2513 gene product from Bacillus halodurans (87 aa); 88.8% identity in 80 aa overlap; hypothetical protein complement(2025914..2026183) Clostridium perfringens str. 13 990059 NP_562666.1 CDS CPE1750 NC_003366.1 2026197 2027081 R similar to gpu:AP001515_248 BH2514 gene product from Bacillus halodurans (294 aa); 38.4% identity in 294 aa overlap; hypothetical protein complement(2026197..2027081) Clostridium perfringens str. 13 990060 NP_562667.1 CDS CPE1751 NC_003366.1 2027301 2028698 R similar to pir:B70219 conserved hypothetical protein BBB22 from Borrelia burgdorferi (451 aa); 49.1% identity in 436 aa overlap. 12 transmembrane regions were found by PSORT.; hypothetical protein complement(2027301..2028698) Clostridium perfringens str. 13 990061 NP_562668.1 CDS ansA NC_003366.1 2028956 2029939 R similar to gpu:AP001512_211 L-asparaginase from Bacillus halodurans (322 aa); 48.2% identity in 141 aa overlap; L-asparaginase complement(2028956..2029939) Clostridium perfringens str. 13 990062 NP_562669.1 CDS spoIVA NC_003366.1 2030290 2031765 R similar to gpu:AP001512_232 stage IV sporulation protein A (spore cortex formation and coat assembly) from Bacillus halodurans (492 aa); 48.8% identity in 490 aa overlap; stage IV sporulation protein A complement(2030290..2031765) Clostridium perfringens str. 13 990063 NP_562670.1 CDS gpsA NC_003366.1 2032094 2033089 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(2032094..2033089) Clostridium perfringens str. 13 990064 NP_562671.1 CDS engA NC_003366.1 2033094 2034410 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2033094..2034410) Clostridium perfringens str. 13 990065 NP_562672.1 CDS CPE1756 NC_003366.1 2034413 2035750 R similar to gp:D90904_134 hypothetical protein from Synechocystis sp. (451 aa); 37% identity in 440 aa overlap; hypothetical protein complement(2034413..2035750) Clostridium perfringens str. 13 990066 NP_562673.1 CDS CPE1757 NC_003366.1 2036077 2037792 R similar to gpu:AP001517_278 two-component sensor histidine kinase involved in phosphate regulation from Bacillus halodurans (589 aa); 33.8% identity in 547 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; sensory box histidine kinase complement(2036077..2037792) Clostridium perfringens str. 13 990067 NP_562674.1 CDS CPE1758 NC_003366.1 2037806 2038510 R similar to prf:2022232K sigG downstream ORF W from Clostridium acetobutylicum (147 aa); 45.1% identity in 133 aa overlap; hypothetical protein complement(2037806..2038510) Clostridium perfringens str. 13 990068 NP_562675.1 CDS nrdR NC_003366.1 2038676 2039125 R similar to sp:YORV_CLOAB HYPOTHETICAL 15.2 KDA PROTEIN IN SIGG 3'REGION (ORF V) from Clostridium acetobutylicum (129 aa); 75.7% identity in 111 aa overlap; transcriptional regulator NrdR complement(2038676..2039125) Clostridium perfringens str. 13 990069 NP_562676.1 CDS CPE1760 NC_003366.1 2039187 2039459 R similar to sp:YORU_CLOAB HYPOTHETICAL 9.6 KDA PROTEIN IN SIGG 3'REGION (ORF U) from Clostridium acetobutylicum (87 aa); 54.9% identity in 71 aa overlap; hypothetical protein complement(2039187..2039459) Clostridium perfringens str. 13 990070 NP_562677.1 CDS sigG NC_003366.1 2039600 2040412 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin; sporulation sigma factor SigG complement(2039600..2040412) Clostridium perfringens str. 13 990071 NP_562678.1 CDS sigE NC_003366.1 2040448 2041155 R sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; sporulation sigma factor SigE complement(2040448..2041155) Clostridium perfringens str. 13 990072 NP_562679.1 CDS spoIIGA NC_003366.1 2041169 2041975 R similar to sp:SP2G_CLOAB PROBABLE SPORULATION SIGMA-E FACTOR PROCESSING PEPTIDASE (EC 3.4.23.-) from Clostridium acetobutylicum (266 aa); 28.4% identity in 268 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; sporulation factor SpoIIGA complement(2041169..2041975) Clostridium perfringens str. 13 990073 NP_562680.1 CDS CPE1764 NC_003366.1 2042013 2042207 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(2042013..2042207) Clostridium perfringens str. 13 990074 NP_562681.1 CDS ftsZ NC_003366.1 2042380 2043525 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(2042380..2043525) Clostridium perfringens str. 13 990075 NP_562682.1 CDS ftsA NC_003366.1 2043539 2044777 R similar to gp:AF218835_4 FtsA ortholog from Clostridium perfringens (109 aa); 96.3% identity in 109 aa overlap; cell division protein FtsA complement(2043539..2044777) Clostridium perfringens str. 13 990076 NP_562683.1 CDS pilT NC_003366.1 2044855 2045907 R similar to gp:AF218835_3 PilT from Clostridium perfringens (350 aa); 94.9% identity in 350 aa overlap; twitching motility protein PilT complement(2044855..2045907) Clostridium perfringens str. 13 990077 NP_562684.1 CDS sigK NC_003366.1 2046088 2046789 R sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment; sporulation sigma factor SigK complement(2046088..2046789) Clostridium perfringens str. 13 990078 NP_562685.1 CDS spoVD NC_003366.1 2046852 2048519 R similar to gp:AF218835_1 penicillin-binding protein from Clostridium perfringens (212 aa); 98.1% identity in 212 aa overlap. N-terminal signal sequence was found by PSORT; stage V sporulation protein D complement(2046852..2048519) Clostridium perfringens str. 13 990079 NP_562686.1 CDS CPE1770 NC_003366.1 2048632 2049258 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(2048632..2049258) Clostridium perfringens str. 13 990080 NP_562687.1 CDS CPE1771 NC_003366.1 2049258 2050487 R similar to pir:H69979 proteinase homolog yrrO from Bacillus subtilis (422 aa); 45.8% identity in 404 aa overlap; peptidase U32 complement(2049258..2050487) Clostridium perfringens str. 13 990081 NP_562688.1 CDS CPE1772 NC_003366.1 2050493 2051137 R similar to pir:F69979 caffeoyl-CoA O-methyltransferase homolog yrrM from Bacillus subtilis (217 aa); 39.7% identity in 209 aa overlap; O-methyltransferase complement(2050493..2051137) Clostridium perfringens str. 13 990082 NP_562689.1 CDS CPE1773 NC_003366.1 2051153 2052181 R similar to pir:A70368 conserved hypothetical protein aq_775 from Aquifex aeolicus (326 aa); 40.7% identity in 295 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2051153..2052181) Clostridium perfringens str. 13 990083 NP_562690.1 CDS typA NC_003366.1 2052324 2054156 R similar to sp:TYPA_HELPY GTP-BINDING PROTEIN TYPA/BIPA HOMOLOG from Helicobacter pylori (strain 26695) (599 aa); 58.4% identity in 596 aa overlap; GTP-binding protein TypA complement(2052324..2054156) Clostridium perfringens str. 13 990084 NP_562691.1 CDS CPE1775 NC_003366.1 2054313 2056058 R similar to gpu:AP001515_132 BH2398 gene product from Bacillus halodurans (555 aa); 54.7% identity in 554 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein complement(2054313..2056058) Clostridium perfringens str. 13 990085 NP_562692.1 CDS CPE1776 NC_003366.1 2056051 2056503 R similar to gp:AF095597_1 ferric uptake regulator homolog from Staphylococcus aureus (149 aa); 45.3% identity in 128 aa overlap; FurR family; FUR family transcriptional regulator complement(2056051..2056503) Clostridium perfringens str. 13 990086 NP_562693.1 CDS CPE1777 NC_003366.1 2056524 2056778 R similar to gpu:AP001511_159 BH1270 gene product from Bacillus halodurans (93 aa); 46.1% identity in 76 aa overlap; hypothetical protein complement(2056524..2056778) Clostridium perfringens str. 13 990087 NP_562694.1 CDS CPE1778 NC_003366.1 2056794 2057207 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(2056794..2057207) Clostridium perfringens str. 13 990088 NP_562695.1 CDS CPE1779 NC_003366.1 2057255 2057512 R similar to gpu:AP001511_157 BH1268 gene product from Bacillus halodurans (90 aa); 52.5% identity in 80 aa overlap. S.D. unclear; hypothetical protein complement(2057255..2057512) Clostridium perfringens str. 13 990089 NP_562696.1 CDS alaS NC_003366.1 2057656 2060295 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(2057656..2060295) Clostridium perfringens str. 13 990090 NP_562697.1 CDS CPE1781 NC_003366.1 2060888 2061925 R partially similar to gpu:AP001511_155 BH1266 gene product from Bacillus halodurans (358 aa); 24.7% identity in 186 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; hypothetical protein complement(2060888..2061925) Clostridium perfringens str. 13 990091 NP_562698.1 CDS CPE1782 NC_003366.1 2061951 2062424 R partially similar to pir:H69208 hypothetical protein MTH815 from Methanobacterium thermoautotrophicum (strain Delta H) (99 aa); 32.3% identity in 62 aa overlap; PRC-barrel domain-containing protein complement(2061951..2062424) Clostridium perfringens str. 13 990092 NP_562699.1 CDS mnmA NC_003366.1 2062713 2063765 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(2062713..2063765) Clostridium perfringens str. 13 990093 NP_562700.1 CDS nifU NC_003366.1 2063817 2064245 R similar to pir:A69273 nifU protein (nifU-1/nifU-2) from Archaeoglobus fulgidus (153 aa); 60.7% identity in 122 aa overlap; nitrogen fixation protein complement(2063817..2064245) Clostridium perfringens str. 13 990094 NP_562701.1 CDS nifS NC_003366.1 2064248 2065444 R similar to prf:2421289A Cys desulfurase from Ruminococcus flavefaciens (396 aa); 55.4% identity in 392 aa overlap; cysteine desulfurase complement(2064248..2065444) Clostridium perfringens str. 13 990095 NP_562702.1 CDS CPE1786 NC_003366.1 2065437 2065823 R similar to gpu:AP001511_148 BH1259 gene product from Bacillus halodurans (139 aa); 45.4% identity in 108 aa overlap; hypothetical protein complement(2065437..2065823) Clostridium perfringens str. 13 990096 NP_562703.1 CDS CPE1787 NC_003366.1 2066029 2067255 R similar to pir:D69981 conserved hypothetical protein yrvN from Bacillus subtilis (421 aa); 45.1% identity in 415 aa overlap; recombination factor protein RarA complement(2066029..2067255) Clostridium perfringens str. 13 990097 NP_562704.1 CDS CPE1788 NC_003366.1 2067478 2068377 R similar to gp:AB017192_14 hypothetical 34.4-kDa protein from Clostridium perfringens (299 aa); 99% identity in 299 aa overlap; hypothetical protein complement(2067478..2068377) Clostridium perfringens str. 13 990098 NP_562705.1 CDS CPE1789 NC_003366.1 2068563 2068991 R similar to gp:AB017192_13 hypothetical 15.6-kDa protein from Clostridium perfringens (142 aa); 97.9% identity in 142 aa overlap; hypothetical protein complement(2068563..2068991) Clostridium perfringens str. 13 990099 NP_562706.1 CDS moaA NC_003366.1 2068994 2069965 R similar to sp:MOAA_CLOPE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A from Clostridium perfringens (323 aa); 91.6% identity in 323 aa overlap; molybdenum cofactor biosynthesis protein A complement(2068994..2069965) Clostridium perfringens str. 13 990100 NP_562707.1 CDS CPE1791 NC_003366.1 2070069 2071082 R similar to gp:AB017192_11 molybdopterin biosynthesis protein from Clostridium perfringens (337 aa); 90.2% identity in 337 aa overlap; molybdopterin biosynthesis protein complement(2070069..2071082) Clostridium perfringens str. 13 990101 NP_562708.1 CDS CPE1792 NC_003366.1 2071201 2071749 R similar to gp:AB017192_10 molybdopterin-guanine dinucleotide biosynthesis protein A from Clostridium perfringens (198 aa); 92.4% identity in 198 aa overlap; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(2071201..2071749) Clostridium perfringens str. 13 990102 NP_562709.1 CDS CPE1793 NC_003366.1 2071842 2073062 R similar to gp:AB017192_9 molybdenum cofactor biosynthesis protein from Clostridium perfringens (406 aa); 96.6% identity in 406 aa overlap; molybdenum cofactor biosynthesis protein MoeA complement(2071842..2073062) Clostridium perfringens str. 13 990103 NP_562710.1 CDS mobB NC_003366.1 2073401 2073883 R similar to gp:AB017192_8 molybdopterin-guanine dinucleotide biosynthesis protein B from Clostridium perfringens (160 aa); 97.5% identity in 160 aa overlap; molybdopterin-guanine dinucleotide biosynthesis protein MobB complement(2073401..2073883) Clostridium perfringens str. 13 990104 NP_562711.1 CDS CPE1795 NC_003366.1 2073974 2075197 R similar to gp:AB017192_7 nitrate reductase NADH oxydase subunit from Clostridium perfringens (407 aa); 90.7% identity in 407 aa overlap. N-terminal signal sequence was found by PSORT; nitrate reductase, NADH oxidase subunit complement(2073974..2075197) Clostridium perfringens str. 13 990105 NP_562712.1 CDS CPE1796 NC_003366.1 2075199 2075612 R similar to gp:AB017192_6 nitrate reductase electron transfer subunit from Clostridium perfringens (137 aa); 99.3% identity in 137 aa overlap; nitrate reductase electron transfer subunit complement(2075199..2075612) Clostridium perfringens str. 13 990106 NP_562713.1 CDS CPE1797 NC_003366.1 2075625 2077703 R similar to gp:AB017192_5 nitrate reductase catalytic subunit from Clostridium perfringen (692 aa); 96.4% identity in 692 aa overlap; nitrate reductase, catalytic subunit complement(2075625..2077703) Clostridium perfringens str. 13 990107 NP_562714.1 CDS CPE1798 NC_003366.1 2077990 2078418 R similar to gp:AB017192_4 Clostridium perfringens nitrate reductase gene cluster, partial and complete cds from Clostridium perfringens (142 aa); 95.1% identity in 142 aa overlap. 3 transmembrane regions were found by PSORT.; hypothetical protein complement(2077990..2078418) Clostridium perfringens str. 13 990108 NP_562715.1 CDS CPE1799 NC_003366.1 2078639 2079916 R similar to gp:AB017192_3 Clostridium perfringens nitrate reductase gene cluster, partial and complete cds from Clostridium perfringens (425 aa); 99.8% identity in 425 aa overlap. N-terminal signal sequence was found by PSORT; FAD dependent oxidoreductase complement(2078639..2079916) Clostridium perfringens str. 13 990109 NP_562716.1 CDS CPE1800 NC_003366.1 2079948 2080928 R similar to gp:AB017192_2 electron transfer subunit protein from Clostridium perfringens (326 aa); 99.4% identity in 326 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein complement(2079948..2080928) Clostridium perfringens str. 13 990110 NP_562717.1 CDS dacB NC_003366.1 2081174 2082049 R similar to gp:AB017192_1 D-alanyl-D-alanine carboxypeptidase from Clostridium perfringens (183 aa); 100% identity in 183 aa overlap. N-terminal signal sequence was found by PSORT; D-alanyl-D-alanine carboxypeptidase complement(2081174..2082049) Clostridium perfringens str. 13 990111 NP_562718.1 CDS CPE1802 NC_003366.1 2082197 2082769 D no significant homology N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 2082197..2082769 Clostridium perfringens str. 13 990112 NP_562719.1 CDS CPE1803 NC_003366.1 2082816 2083235 D similar to gpu:AP001518_26 BH3195 gene product from Bacillus halodurans (147 aa); 44.3% identity in 115 aa overlap; hypothetical protein 2082816..2083235 Clostridium perfringens str. 13 990113 NP_562720.1 CDS scpB NC_003366.1 2083564 2084151 R functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer; segregation and condensation protein B complement(2083564..2084151) Clostridium perfringens str. 13 990114 NP_562721.1 CDS scpA NC_003366.1 2084144 2084890 R functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB; segregation and condensation protein A complement(2084144..2084890) Clostridium perfringens str. 13 990115 NP_562722.1 CDS dacF NC_003366.1 2085161 2086369 R similar to sp:DACF_BACSU PENICILLIN-BINDING PROTEIN DACF PRECURSOR (D-ALANYL-D-ALANINE CARBOXYPEPTIDASE) (EC 3.4.16.4) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE) from Bacillus subtilis (389 aa); 45.6% identity in 342 aa overlap. N-terminal signal sequence was found by PSORT; serine-type D-Ala-D-Ala carboxypeptidase complement(2085161..2086369) Clostridium perfringens str. 13 990116 NP_562723.1 CDS deoA NC_003366.1 2086621 2087922 R similar to sp:PDP_BACSU PYRIMIDINE-NUCLEOSIDE PHOSPHORYLASE (EC 2.4.2.2) (PYNP) from Bacillus subtili (434 aa); 62.7% identity in 432 aa overlap. 2 transmembrane regions were found by PSORT.; pyrimidine-nucleoside phosphorylase complement(2086621..2087922) Clostridium perfringens str. 13 990117 NP_562724.1 CDS CPE1808 NC_003366.1 2088169 2089041 R similar to gpu:AP001512_116 integrase/recombinase from Bacillus halodurans (299 aa); 36.4% identity in 275 aa overlap; tyrosine recombinase XerD complement(2088169..2089041) Clostridium perfringens str. 13 990118 NP_562725.1 CDS spoIIM NC_003366.1 2089091 2089711 R similar to gpu:AP001512_113 stage II sporulation protein M from Bacillus halodurans (217 aa); 23.8% identity in 172 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; stage II sporulation protein M complement(2089091..2089711) Clostridium perfringens str. 13 990119 NP_562726.1 CDS CPE1810 NC_003366.1 2089979 2090509 R similar to pir:H72286 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (179 aa); 38.4% identity in 172 aa overlap; hypothetical protein complement(2089979..2090509) Clostridium perfringens str. 13 990120 NP_562727.1 CDS CPE1811 NC_003366.1 2090571 2090876 R no significant homology; hypothetical protein complement(2090571..2090876) Clostridium perfringens str. 13 990121 NP_562728.1 CDS spo0A NC_003366.1 2090953 2091306 R similar to gp:CBE288947_2 Spo0A protein from Clostridium beijerinckii (273 aa); 89.7% identity in 117 aa overlap.Truncated by frame shift mutation. Truncated by frameshift mutation (confirmed by PCR-direct sequencing); phosphorylation-activated transcription factor complement(2090953..2091306) Clostridium perfringens str. 13 990122 NP_562729.1 CDS CPE1813 NC_003366.1 2091331 2091783 R similar to pir:S60877 phosphorylation-activated transcription factor Spo0A from Clostridium acetobutylicum (strain NCIMB 8052) (224 aa); 76.6% identity in 137 aa overlap.Truncated by frameshift mutation (confirmed by PCR-direct sequencing). 1 transmembrane region was found by PSORT; phosphorylation-activated transcription factor complement(2091331..2091783) Clostridium perfringens str. 13 3245314 NP_562730.1 CDS CPE1814 NC_003366.1 2091957 2093117 R similar to gp:BSU68235_2 SpoIVB from Bacillus subtilis (426 aa); 47.3% identity in 313 aa overlap. N-terminal signal sequence was found by PSORT; stage IV sporulation protein B complement(2091957..2093117) Clostridium perfringens str. 13 990123 NP_562731.1 CDS recN NC_003366.1 2093294 2094991 R similar to sp:RECN_BACSU DNA REPAIR PROTEIN RECN (RECOMBINATION PROTEIN N) from Bacillus subtilis (576 aa); 36.5% identity in 559 aa overlap; DNA repair protein RecN complement(2093294..2094991) Clostridium perfringens str. 13 990124 NP_562732.1 CDS argR NC_003366.1 2095007 2095459 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR complement(2095007..2095459) Clostridium perfringens str. 13 990125 NP_562733.1 CDS CPE1817 NC_003366.1 2095482 2096312 R similar to sp:Y909_AQUAE HYPOTHETICAL PROTEIN AQ_909 from Aquifex aeolicus (274 aa); 36.9% identity in 249 aa overlap. 1 transmembrane region was found by PSORT; NAD(+)/NADH kinase complement(2095482..2096312) Clostridium perfringens str. 13 990126 NP_562734.1 CDS hlyD NC_003366.1 2096397 2097212 R similar to gpu:AP001516_207 hemolysin-like protein from Bacillus halodurans (272 aa); 56.1% identity in 262 aa overlap. 1 transmembrane region was found by PSORT; hemolysin A complement(2096397..2097212) Clostridium perfringens str. 13 990127 NP_562735.1 CDS CPE1819 NC_003366.1 2097224 2099083 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(2097224..2099083) Clostridium perfringens str. 13 990128 NP_562736.1 CDS CPE1820 NC_003366.1 2099104 2100009 R similar to gpu:AP001516_210 geranyltranstransferase (EC 2.5.1.10) from Bacillus halodurans (294 aa); 43% identity in 286 aa overlap; geranyltranstransferase complement(2099104..2100009) Clostridium perfringens str. 13 990129 NP_562737.1 CDS xseB NC_003366.1 2099966 2100193 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(2099966..2100193) Clostridium perfringens str. 13 990130 NP_562738.1 CDS xseA NC_003366.1 2100212 2101414 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(2100212..2101414) Clostridium perfringens str. 13 990131 NP_562739.1 CDS folD NC_003366.1 2101416 2102249 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(2101416..2102249) Clostridium perfringens str. 13 990132 NP_562740.1 CDS nusB NC_003366.1 2102298 2102705 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(2102298..2102705) Clostridium perfringens str. 13 990133 NP_562741.1 CDS CPE1825 NC_003366.1 2102824 2103213 R similar to sp:YQHY_BACSU HYPOTHETICAL 14.7 KDA PROTEIN IN ACCC-FOLD INTERGENIC REGION from Bacillus subtilis (135 aa); 40.7% identity in 113 aa overlap. Also similar to pir:JC2527 alkaline shock protein from Staphylococcus aureus. 2 transmembrane regions were found by PSORT.; alkaline shock protein complement(2102824..2103213) Clostridium perfringens str. 13 990134 NP_562742.1 CDS spoIIIAH NC_003366.1 2103298 2103795 R similar to sp:S3AH_BACSU STAGE III SPORULATION PROTEIN AH from Bacillus subtilis (218 aa); 22.4% identity in 143 aa overlap. N-terminal signal sequence was found by PSORT; stage III sporulation protein AH complement(2103298..2103795) Clostridium perfringens str. 13 990135 NP_562743.1 CDS spoIIIAG NC_003366.1 2103821 2104405 R similar to pir:B69712 mutants block sporulation after engulfment spoIIIAG from Bacillus subtilis (229 aa); 28% identity in 157 aa overlap. N-terminal signal sequence was found by PSORT; stage III sporulation protein AG complement(2103821..2104405) Clostridium perfringens str. 13 990136 NP_562744.1 CDS CPE1828 NC_003366.1 2104441 2104833 R no significant homology; stage III sporulation protein AF complement(2104441..2104833) Clostridium perfringens str. 13 990137 NP_562745.1 CDS spoIIIAE NC_003366.1 2105007 2106179 R similar to gpu:AP001516_222 mutants block sporulation after engulfment from Bacillus halodurans (397 aa); 26.4% identity in 333 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; stage III sporulation protein AE complement(2105007..2106179) Clostridium perfringens str. 13 990138 NP_562746.1 CDS spoIIIAD NC_003366.1 2106190 2106576 R similar to sp:S3AD_BACSU STAGE III SPORULATION PROTEIN AD from Bacillus subtilis (133 aa); 34% identity in 103 aa overlap. S.D. unclear. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; stage III sporulation protein AD complement(2106190..2106576) Clostridium perfringens str. 13 990139 NP_562747.1 CDS spoIIIAC NC_003366.1 2106664 2106861 R similar to sp:S3AC_BACSU STAGE III SPORULATION PROTEIN AC from Bacillus subtilis (68 aa); 49.2% identity in 63 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; stage III sporulation protein AC complement(2106664..2106861) Clostridium perfringens str. 13 990140 NP_562748.1 CDS spoIIIAB NC_003366.1 2106937 2107452 R necessary for complete engulfment of forespore; stage III sporulation protein SpoAB complement(2106937..2107452) Clostridium perfringens str. 13 990141 NP_562749.1 CDS spoIIIAA NC_003366.1 2107599 2108483 R similar to sp:S3AA_BACSU STAGE III SPORULATION PROTEIN AA from Bacillus subtilis (307 aa); 40.3% identity in 293 aa overlap; stage III sporulation protein AA complement(2107599..2108483) Clostridium perfringens str. 13 990142 NP_562750.1 CDS CPE1834 NC_003366.1 2108682 2109044 R no significant homology; hypothetical protein complement(2108682..2109044) Clostridium perfringens str. 13 990143 NP_562751.1 CDS efp NC_003366.1 2109158 2109715 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(2109158..2109715) Clostridium perfringens str. 13 990144 NP_562752.1 CDS CPE1836 NC_003366.1 2109886 2110233 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2109886..2110233) Clostridium perfringens str. 13 990145 NP_562753.1 CDS CPE1837 NC_003366.1 2110230 2110670 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(2110230..2110670) Clostridium perfringens str. 13 990146 NP_562754.1 CDS CPE1838 NC_003366.1 2110630 2111280 R no significant homology; hypothetical protein complement(2110630..2111280) Clostridium perfringens str. 13 990147 NP_562755.1 CDS CPE1839 NC_003366.1 2111216 2111626 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2111216..2111626) Clostridium perfringens str. 13 990148 NP_562756.1 CDS CPE1840 NC_003366.1 2111613 2111903 R no significant homology; hypothetical protein complement(2111613..2111903) Clostridium perfringens str. 13 990149 NP_562757.1 CDS CPE1841 NC_003366.1 2112038 2112550 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2112038..2112550) Clostridium perfringens str. 13 990150 NP_562758.1 CDS CPE1842 NC_003366.1 2112570 2112998 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2112570..2112998) Clostridium perfringens str. 13 990151 NP_562759.1 CDS pilC NC_003366.1 2112991 2114010 R similar to pir:D70365 fimbrial assembly protein PilC from Aquifex aeolicus (408 aa); 22.5% identity in 325 aa overlap. 4 transmembrane regions were found by PSORT.; fimbrial assembly protein complement(2112991..2114010) Clostridium perfringens str. 13 990152 NP_562760.1 CDS tapB NC_003366.1 2113997 2115385 R similar to pir:B70469 type IV pilus assembly protein TapB from Aquifex aeolicus (566 aa); 42.6% identity in 352 aa overlap; type IV pilus assembly protein complement(2113997..2115385) Clostridium perfringens str. 13 990153 NP_562761.1 CDS CPE1845 NC_003366.1 2115485 2116516 R no significant homology; hypothetical protein complement(2115485..2116516) Clostridium perfringens str. 13 990154 NP_562762.1 CDS dapF NC_003366.1 2116533 2117351 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(2116533..2117351) Clostridium perfringens str. 13 990155 NP_562763.1 CDS CPE1847 NC_003366.1 2117443 2119170 D similar to pir:G69877 fibronectin-binding protein homolog yloA from Bacillus subtilis (572 aa); 39.3% identity in 573 aa overlap; fibronectin-binding protein 2117443..2119170 Clostridium perfringens str. 13 990156 NP_562764.1 CDS CPE1848 NC_003366.1 2119280 2120407 R similar to gpu:AP001513_44 BH1771 gene product from Bacillus halodurans (385 aa); 57.1% identity in 364 aa overlap; hypothetical protein complement(2119280..2120407) Clostridium perfringens str. 13 990157 NP_562765.1 CDS CPE1849 NC_003366.1 2120427 2120963 R regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase complement(2120427..2120963) Clostridium perfringens str. 13 990158 NP_562766.1 CDS CPE1850 NC_003366.1 2120967 2121887 R similar to sp:YLYB_BACSU HYPOTHETICAL 33.7 KDA PROTEIN IN LSP-PYRR INTERGENIC REGION (ORF-X) from Bacillus subtilis (303 aa); 56.8% identity in 296 aa overlap; hypothetical protein complement(2120967..2121887) Clostridium perfringens str. 13 990159 NP_562767.1 CDS divIVA NC_003366.1 2122025 2122651 R similar to gpu:AP001515_280 cell-division initiation protein (septum placement) from Bacillus halodurans (165 aa); 32.2% identity in 149 aa overlap; cell-division initiation protein complement(2122025..2122651) Clostridium perfringens str. 13 990160 NP_562768.1 CDS CPE1852 NC_003366.1 2122664 2123425 R similar to pir:H69876 cell-division protein homolog ylmH from Bacillus subtilis (257 aa); 29.4% identity in 194 aa overlap; S4 domain-containing protein complement(2122664..2123425) Clostridium perfringens str. 13 990161 NP_562769.1 CDS CPE1853 NC_003366.1 2123427 2123882 R partially similar to gpu:AP001515_283 BH2549 gene product from Bacillus halodurans (149 aa); 39.2% identity in 79 aa overlap; hypothetical protein complement(2123427..2123882) Clostridium perfringens str. 13 990162 NP_562770.1 CDS CPE1854 NC_003366.1 2123895 2124554 R similar to pir:B72217 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (229 aa); 41.7% identity in 211 aa overlap; hypothetical protein complement(2123895..2124554) Clostridium perfringens str. 13 990163 NP_562771.1 CDS CPE1855 NC_003366.1 2124654 2125385 R similar to gp:BLU01958_3 Bacillus licheniformis 5A2 divIB gene, complete cds from Bacillus licheniformis (188 aa); 28.6% identity in 189 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2124654..2125385) Clostridium perfringens str. 13 990164 NP_562772.1 CDS sbp NC_003366.1 2125398 2125736 R similar to gpu:AP001515_294 small basic protein from Bacillus halodurans (117 aa); 46.7% identity in 92 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; small basic protein complement(2125398..2125736) Clostridium perfringens str. 13 990165 NP_562773.1 CDS CPE1857 NC_003366.1 2125749 2126465 R similar to gpu:AP001515_296 BH2562 gene product from Bacillus halodurans (240 aa); 25.5% identity in 165 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein complement(2125749..2126465) Clostridium perfringens str. 13 990166 NP_562774.1 CDS CPE1858 NC_003366.1 2126479 2127225 R no significant homology N-terminal signal sequence was found by PSORT; cell division protein FtsQ complement(2126479..2127225) Clostridium perfringens str. 13 990167 NP_562775.1 CDS spoVE NC_003366.1 2127383 2128507 R similar to sp:SP5E_BACSU STAGE V SPORULATION PROTEIN E. from Bacillus subtilis (366 aa); 43.2% identity in 352 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; stage V sporulation protein E complement(2127383..2128507) Clostridium perfringens str. 13 990168 NP_562776.1 CDS mraY NC_003366.1 2128535 2129488 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(2128535..2129488) Clostridium perfringens str. 13 990169 NP_562777.1 CDS murF NC_003366.1 2129556 2130917 R similar to sp:MURF_BACSU UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2, 6-DIAMINOPIMELATE-D-ALANYL-D- ALANYL LIGASE (EC 6.3.2.15) (UDP-MURNAC-PENTAPEPTIDE SYNTHETASE) (D-ALANYL-D-ALANINE-ADDING ENZYME) from Bacillus subtilis (457 aa); 38.7% identity in 452 aa overlap; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(2129556..2130917) Clostridium perfringens str. 13 990170 NP_562778.1 CDS murE NC_003366.1 2130930 2132384 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(2130930..2132384) Clostridium perfringens str. 13 990171 NP_562779.1 CDS spoVD NC_003366.1 2132479 2134698 R similar to gpu:AP001516_1 stage V sporulation protein (soprulation specific penicillin-binding protein) (spore cortex) from Bacillus halodurans (644 aa); 33.3% identity in 651 aa overlap. 1 transmembrane region was found by PSORT; stage V sporulation protein D complement(2132479..2134698) Clostridium perfringens str. 13 990172 NP_562780.1 CDS CPE1864 NC_003366.1 2134886 2135314 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(2134886..2135314) Clostridium perfringens str. 13 990173 NP_562781.1 CDS mraW NC_003366.1 2135386 2136318 R similar to sp:YLXA_BACSU HYPOTHETICAL 35.3 KDA PROTEIN IN FTSL 5'REGION (ORFB) from Bacillus subtilis (311 aa); 54.1% identity in 307 aa overlap; S-adenosyl-methyltransferase MraW complement(2135386..2136318) Clostridium perfringens str. 13 990174 NP_562782.1 CDS CPE1866 NC_003366.1 2136866 2137963 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(2136866..2137963) Clostridium perfringens str. 13 990176 NP_562783.1 CDS CPE1867 NC_003366.1 2138122 2138919 D similar to prf:2516401CT polysaccharide deacetylase-like protein from Bacillus cereus (260 aa); 43.8% identity in 258 aa overlap. N-terminal signal sequence was found by PSORT; nodulation protein nodB; polysaccharide deacetylase 2138122..2138919 Clostridium perfringens str. 13 990177 NP_562784.1 CDS CPE1868 NC_003366.1 2139099 2139734 R similar to sp:SCE4_METEX SERINE CYCLE ENZYME (ORF4) from Methylobacterium extorquens (208 aa); 30% identity in 200 aa overlap. 2 transmembrane regions were found by PSORT.; methenyltetrahydrofolate cyclohydrolase complement(2139099..2139734) Clostridium perfringens str. 13 990178 NP_562785.1 CDS CPE1869 NC_003366.1 2139763 2141049 R similar to C-terminal region of gp:AF169324_12 BcbC from Pasteurella multocida (1033 aa); 27% identity in 244 aa overlap; hypothetical protein complement(2139763..2141049) Clostridium perfringens str. 13 990179 NP_562786.1 CDS tagA NC_003366.1 2141049 2141765 R similar to gp:TTH401026_3 hypothetical protein from Thermoanaerobacter thermohydrosulfuricus (245 aa); 39.9% identity in 208 aa overlap; teichoic acid biosynthesis protein A complement(2141049..2141765) Clostridium perfringens str. 13 990180 NP_562787.1 CDS CPE1871 NC_003366.1 2141781 2142428 R similar to sp:Y263_METJA HYPOTHETICAL PROTEIN MJ0263 from Methanococcus jannaschii (320 aa); 23.4% identity in 201 aa overlap. ATA start; TPR domain-containing protein complement(2141781..2142428) Clostridium perfringens str. 13 990181 NP_562788.1 CDS CPE1872 NC_003366.1 2142447 2142881 R no significant homology; hypothetical protein complement(2142447..2142881) Clostridium perfringens str. 13 990182 NP_562789.1 CDS manB NC_003366.1 2143173 2144900 R similar to gpu:AP001510_281 phosphomannomutase from Bacillus halodurans (578 aa); 51.1% identity in 573 aa overlap; phosphomannomutase complement(2143173..2144900) Clostridium perfringens str. 13 990183 NP_562790.1 CDS ctc NC_003366.1 2145056 2145667 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(2145056..2145667) Clostridium perfringens str. 13 990184 NP_562791.1 CDS CPE1875 NC_003366.1 2145801 2150240 R partially similar to gpu:AP001510_17 BH0842 gene product from Bacillus halodurans (795 aa); 40.8% identity in 762 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2145801..2150240) Clostridium perfringens str. 13 990185 NP_562792.1 CDS CPE1876 NC_003366.1 2150418 2152670 R partially similar to gpu:AE003864_7 hypothetical protein from Xylella fastidiosa (460 aa); 33.6% identity in 438 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2150418..2152670) Clostridium perfringens str. 13 990186 NP_562793.1 CDS glpQ NC_003366.1 2152894 2153610 R similar to pir:F69961 glycerophosphodiester phosphodiesterase homolog yqiK from Bacillus subtilis (239 aa); 39.2% identity in 227 aa overlap; glycerophosphodiester phosphodiesterase complement(2152894..2153610) Clostridium perfringens str. 13 990187 NP_562794.1 CDS CPE1878 NC_003366.1 2153614 2154636 R similar to gpu:AP000600_10 glycolate oxidase from Arabidopsis thaliana (365 aa); 35.9% identity in 295 aa overlap. 2 transmembrane regions were found by PSORT.; glycolate oxidase complement(2153614..2154636) Clostridium perfringens str. 13 990188 NP_562795.1 CDS CPE1879 NC_003366.1 2154650 2155093 R similar to pir:F69744 hypothetical protein ybbK from Bacillus subtilis (151 aa); 47.9% identity in 146 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2154650..2155093) Clostridium perfringens str. 13 990189 NP_562796.1 CDS spoVD NC_003366.1 2155331 2157514 R similar to gpu:AP001516_1 stage V sporulation protein (soprulation specific penicillin-binding protein) (spore cortex) from Bacillus halodurans (644 aa); 37.5% identity in 627 aa overlap. N-terminal signal sequence was found by PSORT; soprulation specific penicillin-binding protein; stage V sporulation protein D complement(2155331..2157514) Clostridium perfringens str. 13 990190 NP_562797.1 CDS mutS2 NC_003366.1 2157777 2160137 R MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein complement(2157777..2160137) Clostridium perfringens str. 13 990191 NP_562798.1 CDS CPE1882 NC_003366.1 2160151 2162511 R similar to pir:D69102 collagenase from Methanobacterium thermoautotrophicum (strain Delta H) (807 aa); 37.5% identity in 512 aa overlap; proteinase; peptidase U32 complement(2160151..2162511) Clostridium perfringens str. 13 990192 NP_562799.1 CDS CPE1883 NC_003366.1 2162901 2163689 D similar to sp:YHIC_LACLA HYPOTHETICAL 31.3 KDA PROTEIN IN HISIE 3'REGION (ORF13) from Lactococcus lactis subsp. lactis (269 aa); 33% identity in 221 aa overlap; histidinol-phosphatase 2162901..2163689 Clostridium perfringens str. 13 990193 NP_562800.1 CDS CPE1884 NC_003366.1 2163776 2165131 R no significant homology; hypothetical protein complement(2163776..2165131) Clostridium perfringens str. 13 990194 NP_562801.1 CDS pheT NC_003366.1 2165212 2167593 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(2165212..2167593) Clostridium perfringens str. 13 990195 NP_562802.1 CDS pheS NC_003366.1 2167617 2168642 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(2167617..2168642) Clostridium perfringens str. 13 990196 NP_562803.1 CDS CPE1887 NC_003366.1 2169225 2170379 R similar to pir:F75550 probable transposase from Deinococcus radiodurans (strain R1) (409 aa); 43% identity in 381 aa overlap; transposase complement(2169225..2170379) Clostridium perfringens str. 13 990197 NP_562804.1 CDS CPE1888 NC_003366.1 2170390 2170761 R similar to pir:F75335 probable transposase from Deinococcus radiodurans (strain R1) (140 aa); 52.8% identity in 123 aa overlap; transposase complement(2170390..2170761) Clostridium perfringens str. 13 990198 NP_562805.1 CDS CPE1889 NC_003366.1 2171082 2171855 R similar to gpu:AP001517_234 rRNA methylase from Bacillus halodurans (251 aa); 39% identity in 223 aa overlap; TrmH family RNA methyltransferase complement(2171082..2171855) Clostridium perfringens str. 13 990199 NP_562806.1 CDS trkA NC_003366.1 2171881 2172546 R similar to prf:2408326B trkA gene from Thermoanaerobacter ethanolicus (195 aa); 59.3% identity in 189 aa overlap. 1 transmembrane region was found by PSORT; potassium uptake system protein complement(2171881..2172546) Clostridium perfringens str. 13 990200 NP_562807.1 CDS trkB NC_003366.1 2172569 2173909 R similar to pir:G53610 ntpJ protein from Enterococcus hirae (448 aa); 45.3% identity in 437 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; TrkH family potassium uptake protein complement(2172569..2173909) Clostridium perfringens str. 13 990201 NP_562808.1 CDS rplT NC_003366.1 2174138 2174497 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(2174138..2174497) Clostridium perfringens str. 13 990202 NP_562809.1 CDS rpmI NC_003366.1 2174527 2174724 R similar to gpu:AP001517_261 ribosomal protein L35 from Bacillus halodurans (66 aa); 62.5% identity in 64 aa overlap; 50S ribosomal protein L35 complement(2174527..2174724) Clostridium perfringens str. 13 990203 NP_562810.1 CDS infC NC_003366.1 2174746 2175150 R similar to pir:FIBS3F translation initiation factor IF-3 from Bacillus stearothermophilus (172 aa); 46.4% identity in 168 aa overlap; translation initiation factor IF-3 complement(2174746..2175150) Clostridium perfringens str. 13 990204 NP_562811.1 CDS CPE1895 NC_003366.1 2175549 2176427 R similar to sp:YTXC_BACSU HYPOTHETICAL 33.3 KDA PROTEIN IN DNAI-THRS INTERGENIC REGION (ORF-281) from Bacillus subtilis (281 aa); 24.8% identity in 202 aa overlap; sporulation protein YtxC complement(2175549..2176427) Clostridium perfringens str. 13 990205 NP_562812.1 CDS CPE1896 NC_003366.1 2176562 2177257 D similar to prf:2509371E grrZ gene from Eubacterium acidaminophilum (220 aa); 42.1% identity in 183 aa overlap; hypothetical protein 2176562..2177257 Clostridium perfringens str. 13 990206 NP_562813.1 CDS CPE1897 NC_003366.1 2177512 2178492 D similar to pir:T35886 hypothetical protein SC9B10.17 from Streptomyces coelicolor (330 aa); 33.8% identity in 302 aa overlap. 1 transmembrane region was found by PSORT; BadF/BadG/BcrA/BcrD ATPase 2177512..2178492 Clostridium perfringens str. 13 990207 NP_562814.1 CDS CPE1898 NC_003366.1 2178625 2179179 R similar to sp:YSA1_YEAST YSA1 PROTEIN from Saccharomyces cerevisiae (231 aa); 34.3% identity in 134 aa overlap; hypothetical protein complement(2178625..2179179) Clostridium perfringens str. 13 990208 NP_562815.1 CDS CPE1899 NC_003366.1 2179345 2179899 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2179345..2179899) Clostridium perfringens str. 13 990209 NP_562816.1 CDS CPE1900 NC_003366.1 2180198 2180575 D no significant homology; hypothetical protein 2180198..2180575 Clostridium perfringens str. 13 990210 NP_562817.1 CDS hslO NC_003366.1 2181056 2182015 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; heat shock protein 33 complement(2181056..2182015) Clostridium perfringens str. 13 990215 NP_562818.1 CDS CPE1902 NC_003366.1 2182031 2182768 R similar to sp:YQEM_BACSU HYPOTHETICAL 28.3 KDA PROTEIN IN AROD-COMER INTERGENIC REGION from Bacillus subtilis (247 aa); 31% identity in 242 aa overlap; hypothetical protein complement(2182031..2182768) Clostridium perfringens str. 13 990216 NP_562819.1 CDS CPE1903 NC_003366.1 2182820 2183092 R similar to sp:SAS2_CLOBI SMALL, ACID-SOLUBLE SPORE PROTEIN BETA (SASP) (ASSP) from Clostridium bifermentans (64 aa); 46.4% identity in 56 aa overlap; beta type small acid-soluble spore protein complement(2182820..2183092) Clostridium perfringens str. 13 990217 NP_562820.1 CDS asd NC_003366.1 2183294 2184271 D similar to sp:DHAS_AQUAE ASPARTATE-SEMIALDEHYDE DEHYDROGENASE (EC 1.2.1.11) (ASA DEHYDROGENASE) from Aquifex aeolicus (340 aa); 55.7% identity in 323 aa overlap; aspartate-semialdehyde dehydrogenase 2183294..2184271 Clostridium perfringens str. 13 990218 NP_562821.1 CDS dapA NC_003366.1 2184296 2185171 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2184296..2185171 Clostridium perfringens str. 13 990219 NP_562822.1 CDS dapB NC_003366.1 2185244 2186008 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 2185244..2186008 Clostridium perfringens str. 13 990220 NP_562823.1 CDS patA NC_003366.1 2186304 2187446 R similar to prf:1603288B kinA assocd ORF Y from Bacillus subtilis (393 aa); 44.1% identity in 381 aa overlap.Also similar to many aminotransferases; asparate aminotransferase complement(2186304..2187446) Clostridium perfringens str. 13 990221 NP_562824.1 CDS CPE1908 NC_003366.1 2187446 2187982 R similar to pir:B72252 cob(I)alamin adenosyltransferase from Thermotoga maritima (strain MSB8) (170 aa); 44.5% identity in 173 aa overlap; cob(I)alamin adenosyltransferase complement(2187446..2187982) Clostridium perfringens str. 13 990222 NP_562825.1 CDS dapD NC_003366.1 2188176 2188886 D similar to pir:F69866 tetrahydrodipicolinate succinylase homolog ykuQ from Bacillus subtilis (236 aa); 53.7% identity in 231 aa overlap. 1 transmembrane region was found by PSORT; tetrahydrodipicolinate succinylase 2188176..2188886 Clostridium perfringens str. 13 990223 NP_562826.1 CDS CPE1910 NC_003366.1 2188936 2189592 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(2188936..2189592) Clostridium perfringens str. 13 990224 NP_562827.1 CDS CPE1911 NC_003366.1 2189708 2190484 R partially similar to pir:H69882 deacetylase homolog ylxY from Bacillus subtilis (319 aa); 28.5% identity in 200 aa overlap. N-terminal signal sequence was found by PSORT; polysaccharide deacetylase complement(2189708..2190484) Clostridium perfringens str. 13 990225 NP_562828.1 CDS CPE1912 NC_003366.1 2190592 2191122 D no significant homology; hypothetical protein 2190592..2191122 Clostridium perfringens str. 13 990226 NP_562829.1 CDS CPE1913 NC_003366.1 2191188 2192294 D similar to gp:AF051356_3 permease from Streptococcus mutans (364 aa); 27.1% identity in 362 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; hypothetical protein 2191188..2192294 Clostridium perfringens str. 13 990227 NP_562830.1 CDS CPE1914 NC_003366.1 2192466 2193887 D similar to prf:2423292A psr gene from Enterococcus hirae (293 aa); 30.7% identity in 293 aa overlap. N-terminal signal sequence was found by PSORT; PBP 5 synthesis repressor 2192466..2193887 Clostridium perfringens str. 13 990228 NP_562831.1 CDS hlyE NC_003366.1 2193942 2194583 R similar to sp:HLY3_BACCE HEMOLYSIN III (HLY-III) from Bacillus cereus (219 aa); 42.9% identity in 203 aa overlap. 6 transmembrane regions were found by PSORT.; hemolysin III complement(2193942..2194583) Clostridium perfringens str. 13 990229 NP_562832.1 CDS CPE1916 NC_003366.1 2194709 2195203 D similar to pir:S74709 hypothetical protein sll1188 from Synechocystis sp. (strain PCC 6803) (164 aa); 43.9% identity in 164 aa overlap; hypothetical protein 2194709..2195203 Clostridium perfringens str. 13 990230 NP_562833.1 CDS CPE1917 NC_003366.1 2195318 2196877 R similar to gpu:AE004383_5 conserved hypothetical protein from Vibrio cholerae (468 aa); 34.3% identity in 353 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; hypothetical protein complement(2195318..2196877) Clostridium perfringens str. 13 990231 NP_562834.1 CDS folC NC_003366.1 2196988 2198310 R similar to gp:CPFOLC_1 folC gene product from Clostridium perfringens (148 aa); 98.6% identity in 145 aa overlap. 1 transmembrane region was found by PSORT; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(2196988..2198310) Clostridium perfringens str. 13 990232 NP_562835.1 CDS valS NC_003366.1 2198991 2201633 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(2198991..2201633) Clostridium perfringens str. 13 990233 NP_562836.1 CDS CPE1920 NC_003366.1 2202293 2202643 D no significant homology; hypothetical protein 2202293..2202643 Clostridium perfringens str. 13 990234 NP_562837.1 CDS CPE1921 NC_003366.1 2202701 2202862 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(2202701..2202862) Clostridium perfringens str. 13 990235 NP_562838.1 CDS CPE1922 NC_003366.1 2202849 2204024 R partially similar to pir:C71139 hypothetical protein PH0326 from Pyrococcus horikoshii (1003 aa); 33.3% identity in 120 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; transglutaminase domain-containing protein complement(2202849..2204024) Clostridium perfringens str. 13 990236 NP_562839.1 CDS recX NC_003366.1 2204030 2204668 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(2204030..2204668) Clostridium perfringens str. 13 990237 NP_562840.1 CDS CPE1924 NC_003366.1 2204674 2205918 R similar to sp:YMXG_BACSU HYPOTHETICAL ZINC PROTEASE YMXG (EC 3.4.99.-) (ORFP) from Bacillus subtilis (409 aa); 29% identity in 365 aa overlap; M16 family peptidase complement(2204674..2205918) Clostridium perfringens str. 13 990238 NP_562841.1 CDS CPE1925 NC_003366.1 2205887 2206684 D similar to gp:CPHYPC_1 hypC gene product from Clostridium perfringens (110 aa); 100% identity in 106 aa overlap.Also similar to many two-component response regulators; DNA-binding response regulator 2205887..2206684 Clostridium perfringens str. 13 990239 NP_562842.1 CDS CPE1926 NC_003366.1 2206684 2208207 D similar to prf:1502267A phoR gene from Bacillus subtilis (579 aa); 38.1% identity in 223 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; sensor histidine kinase 2206684..2208207 Clostridium perfringens str. 13 990240 NP_562843.1 CDS fabG NC_003366.1 2208522 2209268 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(2208522..2209268) Clostridium perfringens str. 13 990241 NP_562844.1 CDS CPE1928 NC_003366.1 2209361 2210347 R similar to pir:S20452 hypothetical protein X (fragment) from Klebsiella pneumoniae (271 aa); 34.3% identity in 254 aa overlap; dipeptidase complement(2209361..2210347) Clostridium perfringens str. 13 990242 NP_562845.1 CDS glyA NC_003366.1 2210573 2211805 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(2210573..2211805) Clostridium perfringens str. 13 990243 NP_562846.1 CDS CPE1930 NC_003366.1 2211985 2212755 D similar to gpu:AP001507_81 BH0081 gene product from Bacillus halodurans (251 aa); 34.3% identity in 245 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 2211985..2212755 Clostridium perfringens str. 13 990244 NP_562847.1 CDS CPE1931 NC_003366.1 2212756 2213277 D similar to gpu:AP001507_82 BH0082 gene product from Bacillus halodurans (150 aa); 36.8% identity in 133 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 2212756..2213277 Clostridium perfringens str. 13 990245 NP_562848.1 CDS CPE1932 NC_003366.1 2213295 2213567 R similar to pir:G70041 conserved hypothetical protein yvgZ from Bacillus subtilis (101 aa); 40% identity in 90 aa overlap; hypothetical protein complement(2213295..2213567) Clostridium perfringens str. 13 990246 NP_562849.1 CDS aspS NC_003366.1 2213854 2215647 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(2213854..2215647) Clostridium perfringens str. 13 990247 NP_562850.1 CDS hisS NC_003366.1 2215668 2216915 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(2215668..2216915) Clostridium perfringens str. 13 990248 NP_562851.1 CDS hemZ NC_003366.1 2216947 2218389 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(2216947..2218389) Clostridium perfringens str. 13 990249 NP_562852.1 CDS CPE1936 NC_003366.1 2218379 2218999 R similar to sp:YCBL_ECOLI HYPOTHETICAL 23.8 KDA PROTEIN IN MUKB-ASPC INTERGENIC REGION from Escherichia coli (215 aa); 39.8% identity in 206 aa overlap; metallo-beta-lactamase complement(2218379..2218999) Clostridium perfringens str. 13 990250 NP_562853.1 CDS CPE1937 NC_003366.1 2219159 2219608 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(2219159..2219608) Clostridium perfringens str. 13 990251 NP_562854.1 CDS relA NC_003366.1 2219623 2221803 R (p)ppGpp synthetase; 726 aa, similar to prf:2404419A relA gene from Bacillus subtilis (734 aa); 54% identity in 722 aa overlap. 1 transmembrane region was found by PSORT; GTP pyrophosphokinase complement(2219623..2221803) Clostridium perfringens str. 13 990252 NP_562855.1 CDS apt NC_003366.1 2221955 2222473 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(2221955..2222473) Clostridium perfringens str. 13 990253 NP_562856.1 CDS CPE1940 NC_003366.1 2222518 2223372 R partially similar to pir:H69980 single-strand DNA-specific exonuclease homolog yrvE from Bacillus subtilis (786 aa); 27.9% identity in 262 aa overlap. 2 transmembrane regions were found by PSORT.; DHH domain-containing protein complement(2222518..2223372) Clostridium perfringens str. 13 990254 NP_562857.1 CDS secF NC_003366.1 2223573 2224442 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(2223573..2224442) Clostridium perfringens str. 13 990255 NP_562858.1 CDS secD NC_003366.1 2224435 2225694 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(2224435..2225694) Clostridium perfringens str. 13 990256 NP_562859.1 CDS CPE1943 NC_003366.1 2225792 2227165 R similar to pir:E72268 astB/chuR-related protein from Thermotoga maritima (strain MSB8) (463 aa); 27.6% identity in 424 aa overlap; astB/chuR-related protein complement(2225792..2227165) Clostridium perfringens str. 13 990257 NP_562860.1 CDS yajC NC_003366.1 2227570 2227839 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(2227570..2227839) Clostridium perfringens str. 13 990258 NP_562861.1 CDS tgt NC_003366.1 2227878 2229020 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(2227878..2229020) Clostridium perfringens str. 13 990259 NP_562862.1 CDS queA NC_003366.1 2229044 2230069 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(2229044..2230069) Clostridium perfringens str. 13 990260 NP_562863.1 CDS ruvB NC_003366.1 2230091 2231131 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(2230091..2231131) Clostridium perfringens str. 13 990261 NP_562864.1 CDS ruvA NC_003366.1 2231145 2231750 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(2231145..2231750) Clostridium perfringens str. 13 990262 NP_562865.1 CDS CPE1949 NC_003366.1 2231978 2232571 R similar to pir:T44357 hypothetical protein from Clostridium histolyticum (204 aa); 30.3% identity in 165 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2231978..2232571) Clostridium perfringens str. 13 990263 NP_562866.1 CDS cpdB NC_003366.1 2232719 2236264 R similar to gp:AB028630_4 2', 3'-cyclic nucleotide 2'-phosphodiesterase from Clostridium perfringens (865 aa); 65.7% identity in 867 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; 2', 3'-cyclic nucleotide 2'-phosphodiesterase complement(2232719..2236264) Clostridium perfringens str. 13 990264 NP_562867.1 CDS cpdA NC_003366.1 2236515 2240162 R similar to gp:AB028630_4 2', 3'-cyclic nucleotide 2'-phosphodiesterase from Clostridium perfringens (865 aa); 99.9% identity in 865 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; 2', 3'-cyclic nucleotide 2'-phosphodiesterase complement(2236515..2240162) Clostridium perfringens str. 13 990265 NP_562868.1 CDS ptp NC_003366.1 2240411 2241409 R similar to gp:AB028630_3 protein-tyrosine phosphatase from Clostridium perfringens (332 aa); 95.8% identity in 332 aa overlap; hypothetical protein complement(2240411..2241409) Clostridium perfringens str. 13 990266 NP_562869.1 CDS CPE1953 NC_003366.1 2241885 2242319 R similar to gp:AB028630_2 bacterial hemoglobin from Clostridium perfringens (144 aa); 100% identity in 144 aa overlap; hemoglobin complement(2241885..2242319) Clostridium perfringens str. 13 990267 NP_562870.1 CDS CPE1954 NC_003366.1 2242745 2243482 R similar to gp:AB028630_1 hypothetical protein from Clostridium perfringens (245 aa); 90.6% identity in 245 aa overlap; hypothetical protein complement(2242745..2243482) Clostridium perfringens str. 13 990268 NP_562871.1 CDS CPE1955 NC_003366.1 2243608 2244261 R similar to pir:T44352 hypothetical protein from Clostridium histolyticum (216 aa); 50.7% identity in 213 aa overlap; hypothetical protein complement(2243608..2244261) Clostridium perfringens str. 13 990269 NP_562872.1 CDS CPE1956 NC_003366.1 2244267 2245673 R similar to pir:T44350 hypothetical protein from Clostridium histolyticum (466 aa); 51.1% identity in 466 aa overlap. Also similar to pir:E75208 probable valine-pyruvate transaminase (EC 2.6.1.66) PAB2227 from Pyrococcus abyssi (strain Orsay); GntR family transcriptional regulator complement(2244267..2245673) Clostridium perfringens str. 13 990270 NP_562873.1 CDS CPE1957 NC_003366.1 2245688 2246590 R similar to pir:T44349 hypothetical protein from Clostridium histolyticum (298 aa); 32.4% identity in 296 aa overlap; nucleotidyltransferase domain-containing protein complement(2245688..2246590) Clostridium perfringens str. 13 990271 NP_562874.1 CDS CPE1958 NC_003366.1 2246632 2247105 R no significant homology; hypothetical protein complement(2246632..2247105) Clostridium perfringens str. 13 990272 NP_562875.1 CDS hflX NC_003366.1 2247237 2249030 R similar to pir:T44348 GTP binding protein from Clostridium histolyticum (596 aa); 55.8% identity in 597 aa overlap; GTPase; GTP binding protein complement(2247237..2249030) Clostridium perfringens str. 13 990273 NP_562876.1 CDS hprT NC_003366.1 2249137 2249661 D similar to pir:T44347 hypoxanthine phosphoribosyltransferase (EC 2.4.2.8) from Clostridium histolyticum (175 aa); 65.9% identity in 173 aa overlap; hypoxanthine phosphoribosyltransferase 2249137..2249661 Clostridium perfringens str. 13 990274 NP_562877.1 CDS CPE1961 NC_003366.1 2249695 2250384 R similar to pir:T44346 hypothetical protein from Clostridium histolyticum (215 aa); 51.5% identity in 198 aa overlap. 1 transmembrane region was found by PSORT; sporulation protein YunB complement(2249695..2250384) Clostridium perfringens str. 13 990275 NP_562878.1 CDS pbpA NC_003366.1 2250521 2252560 D similar to gpu:AP001512_289 penicillin-binding proteins 1A/1B from Bacillus halodurans (886 aa); 33.4% identity in 613 aa overlap. 1 transmembrane region was found by PSORT; penicillin-binding proteins 1A/1B 2250521..2252560 Clostridium perfringens str. 13 990276 NP_562879.1 CDS CPE1963 NC_003366.1 2252578 2253012 D no significant homology; hypothetical protein 2252578..2253012 Clostridium perfringens str. 13 990277 NP_562880.1 CDS CPE1964 NC_003366.1 2253306 2254706 D similar to gpu:AP001516_143 amino acid carrier protein (sodium/alanine symporter) from Bacillus halodurans (470 aa); 51.3% identity in 464 aa overlap. 9 transmembrane regions were found by PSORT.; sodium/alanine symporter; amino acid carrier protein 2253306..2254706 Clostridium perfringens str. 13 990278 NP_562881.1 CDS CPE1965 NC_003366.1 2254743 2255135 R no significant homology; hypothetical protein complement(2254743..2255135) Clostridium perfringens str. 13 990279 NP_562882.1 CDS CPE1966 NC_003366.1 2255183 2256157 R no significant homology; GNAT family acetyltransferase complement(2255183..2256157) Clostridium perfringens str. 13 990280 NP_562883.1 CDS CPE1967 NC_003366.1 2256585 2257124 D similar to pir:E72348 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (176 aa); 42.2% identity in 173 aa overlap; DNA-binding protein 2256585..2257124 Clostridium perfringens str. 13 990281 NP_562884.1 CDS potA NC_003366.1 2257156 2258205 D similar to pir:A70180 spermidine/putrescine ABC transporter, ATP-binding protein (potA) homolog from Borrelia burgdorferi (347 aa); 56.7% identity in 344 aa overlap; ATP-binding protein; spermidine/putrescine ABC transporter 2257156..2258205 Clostridium perfringens str. 13 990282 NP_562885.1 CDS potB NC_003366.1 2258208 2259053 D similar to pir:H70179 spermidine/putrescine ABC transporter, permease (potB) homolog from Borrelia burgdorferi (269 aa); 46.1% identity in 204 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; permease; spermidine/putrescine ABC transporter 2258208..2259053 Clostridium perfringens str. 13 990283 NP_562886.1 CDS potC NC_003366.1 2259047 2259847 D similar to pir:G70179 spermidine/putrescine ABC transporter, permease (potC) homolog from Borrelia burgdorferi (263 aa); 41.2% identity in 245 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permease; spermidine/putrescine ABC transporter 2259047..2259847 Clostridium perfringens str. 13 990284 NP_562887.1 CDS potD NC_003366.1 2259849 2260931 D similar to sp:POTD_ECOLI SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN PRECURSOR (SPBP) from Escherichia coli (348 aa); 43.1% identity in 306 aa overlap. N-terminal signal sequence was found by PSORT; binding protein; spermidine/putrescine ABC transporter 2259849..2260931 Clostridium perfringens str. 13 990285 NP_562888.1 CDS ndk NC_003366.1 2260966 2261397 R similar to sp:NDK_METTH NUCLEOSIDE DIPHOSPHATE KINASE (EC 2.7.4.6) (NDK) (NDP KINASE) from Methanobacterium thermoautotrophicum (151 aa); 52.9% identity in 140 aa overlap; nucleoside diphosphate kinase complement(2260966..2261397) Clostridium perfringens str. 13 990286 NP_562889.1 CDS CPE1973 NC_003366.1 2261582 2261851 D similar to sp:ACYP_BACSU ACYLPHOSPHATASE (EC 3.6.1.7) (ACYLPHOSPHATE PHOSPHOHYDROLASE) from Bacillus subtilis (91 aa); 36.8% identity in 87 aa overlap; acylphosphatase 2261582..2261851 Clostridium perfringens str. 13 990287 NP_562890.1 CDS CPE1974 NC_003366.1 2261991 2262146 R no significant homology; hypothetical protein complement(2261991..2262146) Clostridium perfringens str. 13 990288 NP_562891.1 CDS CPE1975 NC_003366.1 2262316 2262882 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(2262316..2262882) Clostridium perfringens str. 13 990289 NP_562892.1 CDS dacF NC_003366.1 2263061 2264332 D similar to gpu:AP001512_122 D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) from Bacillus halodurans (387 aa); 33.1% identity in 257 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; penicilin binding protein 5; D-alanyl-D-alanine carboxypeptidase 2263061..2264332 Clostridium perfringens str. 13 990290 NP_562893.1 CDS CPE1977 NC_003366.1 2264387 2265031 R hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr dephosphorylation; pyrophosphatase PpaX complement(2264387..2265031) Clostridium perfringens str. 13 990291 NP_562894.1 CDS asnA NC_003366.1 2265621 2266631 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 2265621..2266631 Clostridium perfringens str. 13 990292 NP_562895.1 CDS CPE1979 NC_003366.1 2266757 2267575 D partially similar to pir:B69196 conserved hypothetical protein MTH72 from Methanobacterium thermoautotrophicum (strain Delta H) (403 aa); 24.7% identity in 186 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 2266757..2267575 Clostridium perfringens str. 13 990293 NP_562896.1 CDS CPE1980 NC_003366.1 2267687 2268064 D similar to sp:YWBH_BACSU HYPOTHETICAL 14.3 KDA PROTEIN IN EPR-GALK INTERGENIC REGION from Bacillus subtilis (128 aa); 30.2% identity in 116 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; LrgA family protein 2267687..2268064 Clostridium perfringens str. 13 990294 NP_562897.1 CDS CPE1981 NC_003366.1 2268057 2268767 D similar to gpu:AP001518_99 BH3268 gene product from Bacillus halodurans (227 aa); 35.3% identity in 221 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; lrgB-like family protein 2268057..2268767 Clostridium perfringens str. 13 990295 NP_562898.1 CDS CPE1982 NC_003366.1 2268864 2269319 D no significant homology; hypothetical protein 2268864..2269319 Clostridium perfringens str. 13 990296 NP_562899.1 CDS topB NC_003366.1 2269532 2271694 R similar to gp:AF192329_12 DNA topoisomerase III-like protein from Enterococcus faecalis (693 aa); 30.5% identity in 696 aa overlap; DNA topoisomerase complement(2269532..2271694) Clostridium perfringens str. 13 990297 NP_562900.1 CDS CPE1984 NC_003366.1 2271934 2273091 R similar to gpu:AP001517_130 BH3008 gene product from Bacillus halodurans (382 aa); 44.7% identity in 380 aa overlap; hypothetical protein complement(2271934..2273091) Clostridium perfringens str. 13 990298 NP_562901.1 CDS CPE1985 NC_003366.1 2273254 2273760 R similar to pir:A57438 tryptophan-rich sensory protein from Rhodobacter sphaeroides (strain 2.4.1) (158 aa); 38.7% identity in 124 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; TspO/MBR family protein complement(2273254..2273760) Clostridium perfringens str. 13 990299 NP_562902.1 CDS CPE1986 NC_003366.1 2273797 2275833 R similar to prf:2314195D adenylate cyclase from Anabaena sp. (1155 aa); 27.8% identity in 227 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; sensor histidine kinase complement(2273797..2275833) Clostridium perfringens str. 13 990300 NP_562903.1 CDS CPE1987 NC_003366.1 2275823 2277709 R similar to sp:RESE_BACSU SENSOR PROTEIN RESE (EC 2.7.3.-) from Bacillus subtilis (589 aa); 29.4% identity in 228 aa overlap. 8 transmembrane regions were found by PSORT.; sensor histidine kinase complement(2275823..2277709) Clostridium perfringens str. 13 990301 NP_562904.1 CDS CPE1988 NC_003366.1 2277830 2278765 R similar to pir:B69196 conserved hypothetical protein MTH72 from Methanobacterium thermoautotrophicum (strain Delta H) (403 aa); 29.4% identity in 187 aa overlap; hypothetical protein complement(2277830..2278765) Clostridium perfringens str. 13 990302 NP_562905.1 CDS CPE1989 NC_003366.1 2278886 2279806 R similar to pir:D83233 hypothetical protein PA3301 from Pseudomonas aeruginosa (strain PAO1) (316 aa); 38.5% identity in 283 aa overlap; alpha/beta fold family hydrolase complement(2278886..2279806) Clostridium perfringens str. 13 990303 NP_562906.1 CDS CPE1990 NC_003366.1 2279929 2280525 R similar to gp:BYPK1CAP_1 serine/threonine kinase from Bacillus thuringiensis (385 aa); 27.8% identity in 162 aa overlap; hypothetical protein complement(2279929..2280525) Clostridium perfringens str. 13 990304 NP_562907.1 CDS CPE1991 NC_003366.1 2280811 2281941 R similar to gp:AB001488_11 ydaJ gene product from Bacillus subtilis (364 aa); 27.1% identity in 314 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2280811..2281941) Clostridium perfringens str. 13 990306 NP_562908.1 CDS CPE1992 NC_003366.1 2281978 2282523 R partially similar to pir:S75975 hypothetical protein from Synechocystis sp. (strain PCC 6803) (847 aa); 34.3% identity in 134 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2281978..2282523) Clostridium perfringens str. 13 990307 NP_562909.1 CDS coaE NC_003366.1 2282533 2283132 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(2282533..2283132) Clostridium perfringens str. 13 990308 NP_562910.1 CDS polA NC_003366.1 2283149 2285749 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(2283149..2285749) Clostridium perfringens str. 13 990309 NP_562911.1 CDS CPE1995 NC_003366.1 2286083 2287000 R catalyzes the formation of glutamate from glutamine; glutaminase complement(2286083..2287000) Clostridium perfringens str. 13 990310 NP_562912.1 CDS CPE1996 NC_003366.1 2287239 2287754 D no significant homology; hypothetical protein 2287239..2287754 Clostridium perfringens str. 13 990311 NP_562913.1 CDS CPE1997 NC_003366.1 2287837 2289072 D similar to sp:AMP2_BACST AMINOPEPTIDASE II (EC 3.4.11.-) (AP-II) from Bacillus stearothermophilus (413 aa); 54% identity in 411 aa overlap; aminopeptidase 2287837..2289072 Clostridium perfringens str. 13 990312 NP_562914.1 CDS CPE1998 NC_003366.1 2289285 2290334 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2289285..2290334) Clostridium perfringens str. 13 990313 NP_562915.1 CDS CPE1999 NC_003366.1 2290351 2291361 R partially similar to pir:T12792 hypothetical protein yomE from pir:T12792 hypothetical protein yomE - Bacillus subtilis phage SPBc2 (644 aa); 30.4% identity in 168 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2290351..2291361) Clostridium perfringens str. 13 990314 NP_562916.1 CDS CPE2000 NC_003366.1 2292272 2292529 R no significant homology 2 transmembrane regions were found by PSORT.; hypothetical protein complement(2292272..2292529) Clostridium perfringens str. 13 990315 NP_562917.1 CDS CPE2001 NC_003366.1 2292691 2293380 R similar to N-terminal of pir:D69376 conserved hypothetical protein AF1012 from Archaeoglobus fulgidus (312 aa); 27.1% identity in 129 aa overlap; radical SAM domain-containing protein complement(2292691..2293380) Clostridium perfringens str. 13 990316 NP_562918.1 CDS CPE2002 NC_003366.1 2293398 2293955 R similar to N-terminal of gp:AF036485_6 hypothetical protein from Plasmid pNZ4000 (200 aa); 20.9% identity in 177 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein complement(2293398..2293955) Clostridium perfringens str. 13 990317 NP_562919.1 CDS CPE2003 NC_003366.1 2293974 2294954 R similar to gp:SPBC1683_6 inosine-uridine preferring nucleoside hydrolase from Schizosaccharomyces pombe (310 aa); 36.3% identity in 303 aa overlap; nucleoside hydrolase, IUNH family complement(2293974..2294954) Clostridium perfringens str. 13 990318 NP_562920.1 CDS CPE2004 NC_003366.1 2295468 2296256 R similar to gp:SCC30_9 hypothetical protein SCC30.09c from Streptomyces coelicolor A3(2) (285 aa); 34.1% identity in 258 aa overlap; hypothetical protein complement(2295468..2296256) Clostridium perfringens str. 13 990319 NP_562921.1 CDS CPE2005 NC_003366.1 2296256 2296945 R similar to gp:D78182_2 ORF3 gene product from Streptococcus mutans (232 aa); 33.6% identity in 229 aa overlap; hypothetical protein complement(2296256..2296945) Clostridium perfringens str. 13 990320 NP_562922.1 CDS CPE2006 NC_003366.1 2296959 2297846 R partially similar to sp:YORS_CLOAB HYPOTHETICAL 14.0 KDA PROTEIN IN SIGA 3'REGION (ORF S) from Clostridium acetobutylicum (118 aa); 25.9% identity in 116 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein complement(2296959..2297846) Clostridium perfringens str. 13 990321 NP_562923.1 CDS sigA NC_003366.1 2298082 2299203 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD complement(2298082..2299203) Clostridium perfringens str. 13 990322 NP_562924.1 CDS dnaG NC_003366.1 2299209 2300996 R synthesizes RNA primers at the replication forks; DNA primase complement(2299209..2300996) Clostridium perfringens str. 13 990323 NP_562925.1 CDS dgtP NC_003366.1 2301165 2302193 R dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(2301165..2302193) Clostridium perfringens str. 13 990324 NP_562926.1 CDS cotS NC_003366.1 2302395 2303474 D similar to pir:F69987 spore coat protein homolog ytaA from Bacillus subtilis (357 aa); 26.7% identity in 266 aa overlap; spore coat protein 2302395..2303474 Clostridium perfringens str. 13 990325 NP_562927.1 CDS podK NC_003366.1 2303526 2306156 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(2303526..2306156) Clostridium perfringens str. 13 990326 NP_562928.1 CDS CPE2012 NC_003366.1 2306257 2306889 R similar to gpu:AP001511_261 BH1372 gene product from Bacillus halodurans (214 aa); 47.6% identity in 210 aa overlap; hypothetical protein complement(2306257..2306889) Clostridium perfringens str. 13 990327 NP_562929.1 CDS CPE2013 NC_003366.1 2307094 2307720 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(2307094..2307720) Clostridium perfringens str. 13 990328 NP_562930.1 CDS recO NC_003366.1 2307726 2308403 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(2307726..2308403) Clostridium perfringens str. 13 990329 NP_562931.1 CDS era NC_003366.1 2308479 2309369 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(2308479..2309369) Clostridium perfringens str. 13 990330 NP_562932.1 CDS CPE2016 NC_003366.1 2309378 2309776 R Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase complement(2309378..2309776) Clostridium perfringens str. 13 990331 NP_562933.1 CDS dgkA NC_003366.1 2309820 2310518 R N-terminal region is similar to gpu:AP001511_253 diacylglycerol kinase from Bacillus halodurans (130 aa); 37.6% identity in 109 aa overlap. 6 transmembrane regions were found by PSORT.; diacylglycerol kinase/PAP2 family protein complement(2309820..2310518) Clostridium perfringens str. 13 990332 NP_562934.1 CDS CPE2018 NC_003366.1 2310546 2311052 R similar to sp:YQFG_BACSU HYPOTHETICAL 17.8 KDA PROTEIN IN PHOH-DGKA INTERGENIC REGION from Bacillus subtilis (157 aa); 39.2% identity in 143 aa overlap; metalloprotease complement(2310546..2311052) Clostridium perfringens str. 13 990333 NP_562935.1 CDS CPE2019 NC_003366.1 2311054 2313108 R similar to gpu:AP001511_251 BH1362 gene product from Bacillus halodurans (721 aa); 33.2% identity in 669 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; hypothetical protein complement(2311054..2313108) Clostridium perfringens str. 13 990334 NP_562936.1 CDS spoIV NC_003366.1 2313145 2314281 R similar to sp:YQFD_BACSU HYPOTHETICAL 45.7 KDA PROTEIN IN RPSU-PHOH INTEREGENIC REGION from Bacillus subtilis (398 aa); 23.8% identity in 366 aa overlap. Also similar to gp:BMAJ4829_4 spoIV gene product from Bacillus megaterium. 1 transmembrane region was found by PSORT; stage IV sporulation protein complement(2313145..2314281) Clostridium perfringens str. 13 990335 NP_562937.1 CDS CPE2021 NC_003366.1 2314283 2314564 R similar to sp:YQFC_BACSU HYPOTHETICAL 10.8 KDA PROTEIN IN RPSU-PHOH INTEREGENIC REGION from Bacillus subtili (93 aa); 30.1% identity in 93 aa overlap; sporulation protein YqfC complement(2314283..2314564) Clostridium perfringens str. 13 990336 NP_562938.1 CDS CPE2022 NC_003366.1 2314789 2315238 R similar to pir:T43743 conserved hypothetical protein orf17 from Listeria monocytogenes (151 aa); 45.2% identity in 146 aa overlap; GatB/Yqey domain-containing protein complement(2314789..2315238) Clostridium perfringens str. 13 990337 NP_562939.1 CDS rpsU NC_003366.1 2315288 2315464 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(2315288..2315464) Clostridium perfringens str. 13 990338 NP_562940.1 CDS CPE2024 NC_003366.1 2315584 2315928 R similar to pir:F83564 probable HIT family protein PA0656 from Pseudomonas aeruginosa (strain PAO1) (112 aa); 58% identity in 112 aa overlap; HIT family protein complement(2315584..2315928) Clostridium perfringens str. 13 990339 NP_562941.1 CDS CPE2025 NC_003366.1 2315997 2317301 R similar to gp:AF036764_3 unknown from Clostridium acetobutylicum (386 aa); 63.2% identity in 386 aa overlap; MiaB-like tRNA modifying protein complement(2315997..2317301) Clostridium perfringens str. 13 990340 NP_562942.1 CDS CPE2026 NC_003366.1 2317301 2318053 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(2317301..2318053) Clostridium perfringens str. 13 990341 NP_562943.1 CDS prmA NC_003366.1 2318076 2319017 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(2318076..2319017) Clostridium perfringens str. 13 990342 NP_562944.1 CDS CPE2028 NC_003366.1 2319244 2319600 R similar to gpu:AP001516_76 transcriptional regulator (GntR family) from Bacillus halodurans (123 aa); 52.5% identity in 118 aa overlap; GntR family; GntR family transcriptional regulator complement(2319244..2319600) Clostridium perfringens str. 13 990343 NP_562945.1 CDS CPE2029 NC_003366.1 2319602 2320780 R partially similar to gp:PFMAL3P2_16 PFC0235w gene product from Plasmodium falciparum (1213 aa); 25.2% identity in 313 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2319602..2320780) Clostridium perfringens str. 13 990344 NP_562946.1 CDS CPE2030 NC_003366.1 2320796 2321623 R similar to gpu:AP001516_78 BH2649 gene product from Bacillus halodurans (274 aa); 23.3% identity in 202 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein complement(2320796..2321623) Clostridium perfringens str. 13 990345 NP_562947.1 CDS CPE2031 NC_003366.1 2321610 2322302 R similar to gpu:AP001516_77 ABC transporter (ATP-binding protein) from Bacillus halodurans (229 aa); 41.4% identity in 227 aa overlap; ATP-binding protein; ABC transporter complement(2321610..2322302) Clostridium perfringens str. 13 990346 NP_562948.1 CDS dnaJ NC_003366.1 2322479 2323642 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ complement(2322479..2323642) Clostridium perfringens str. 13 990347 NP_562949.1 CDS dnaK NC_003366.1 2323756 2325615 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(2323756..2325615) Clostridium perfringens str. 13 990348 NP_562950.1 CDS grpE NC_003366.1 2325672 2326298 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(2325672..2326298) Clostridium perfringens str. 13 990349 NP_562951.1 CDS hrcA NC_003366.1 2326329 2327348 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(2326329..2327348) Clostridium perfringens str. 13 990350 NP_562952.1 CDS hemN NC_003366.1 2327545 2328678 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(2327545..2328678) Clostridium perfringens str. 13 990351 NP_562953.1 CDS CPE2037 NC_003366.1 2328948 2329217 R no significant homology; hypothetical protein complement(2328948..2329217) Clostridium perfringens str. 13 990352 NP_562954.1 CDS lepA NC_003366.1 2329405 2331207 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(2329405..2331207) Clostridium perfringens str. 13 990353 NP_562955.1 CDS CPE2039 NC_003366.1 2331328 2331690 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2331328..2331690) Clostridium perfringens str. 13 990354 NP_562956.1 CDS spoIIP NC_003366.1 2331745 2332830 R similar to gpu:AP001513_176 stage II sporulation protein P from Bacillus halodurans (377 aa); 31.9% identity in 204 aa overlap. N-terminal signal sequence was found by PSORT; stage II sporulation protein P complement(2331745..2332830) Clostridium perfringens str. 13 990355 NP_562957.1 CDS gpr NC_003366.1 2332979 2333956 R Initiates the rapid degradation of small, acid-soluble proteins during spore germination; germination protease complement(2332979..2333956) Clostridium perfringens str. 13 990356 NP_562958.1 CDS rpsT NC_003366.1 2334152 2334415 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 2334152..2334415 Clostridium perfringens str. 13 990357 NP_562959.1 CDS holA NC_003366.1 2334511 2335557 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(2334511..2335557) Clostridium perfringens str. 13 990358 NP_562960.1 CDS CPE2044 NC_003366.1 2335601 2337211 R partially similar to gpu:AP001511_224 late competence operon required for DNA binding and uptake from Bacillus halodurans (773 aa); 29.9% identity in 177 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; hypothetical protein complement(2335601..2337211) Clostridium perfringens str. 13 990359 NP_562961.1 CDS spoVAE NC_003366.1 2337263 2337628 R similar to gpu:AP001512_157 sporulation protein from Bacillus halodurans (116 aa); 38.9% identity in 113 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; stage V sporulation protein AE complement(2337263..2337628) Clostridium perfringens str. 13 990360 NP_562962.1 CDS spoVAD NC_003366.1 2337684 2338703 R similar to sp:SP54_BACSU STAGE V SPORULATION PROTEIN AD from Bacillus subtilis (338 aa); 39.2% identity in 332 aa overlap; stage V sporulation protein AD complement(2337684..2338703) Clostridium perfringens str. 13 990361 NP_562963.1 CDS spoVAC NC_003366.1 2338709 2339176 R similar to gpu:AP001512_155 stage V sporulation protein AC from Bacillus halodurans (159 aa); 49.7% identity in 145 aa overlap. 3 transmembrane regions were found by PSORT.; stage V sporulation protein AC complement(2338709..2339176) Clostridium perfringens str. 13 990362 NP_562964.1 CDS sigF NC_003366.1 2339314 2340069 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.; sporulation sigma factor SigF complement(2339314..2340069) Clostridium perfringens str. 13 990363 NP_562965.1 CDS spoIIAB NC_003366.1 2340087 2340509 R binds to sigma F preventing its association with RNA polymerase during sporulation; anti-sigma F factor complement(2340087..2340509) Clostridium perfringens str. 13 990364 NP_562966.1 CDS spoIIAA NC_003366.1 2340523 2340858 R similar to sp:SP21_BACME ANTI-SIGMA F FACTOR ANTAGONIST (STAGE II SPORULATION PROTEIN AA) from Bacillus megaterium (116 aa); 48.6% identity in 107 aa overlap; stage II sporulation protein AA; anti-sigma F factor antagonist complement(2340523..2340858) Clostridium perfringens str. 13 990365 NP_562967.1 CDS CPE2051 NC_003366.1 2340992 2343277 R similar to pir:H82392 ATP-dependent LA-related proteinase VCA0975 from Vibrio cholerae (group O1 strain N16961) (786 aa); 31.5% identity in 715 aa overlap; ATP-dependent protease complement(2340992..2343277) Clostridium perfringens str. 13 990366 NP_562968.1 CDS deoC NC_003366.1 2343478 2344152 R catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(2343478..2344152) Clostridium perfringens str. 13 990367 NP_562969.1 CDS CPE2053 NC_003366.1 2344409 2344816 D no significant homology; hypothetical protein 2344409..2344816 Clostridium perfringens str. 13 990368 NP_562970.1 CDS CPE2054 NC_003366.1 2345077 2347626 R similar to pir:H69877 calcium-transporting ATPase homolog yloB from Bacillus subtilis (890 aa); 48.7% identity in 649 aa overlap. 9 transmembrane regions were found by PSORT.; cation-transporting ATPase complement(2345077..2347626) Clostridium perfringens str. 13 990369 NP_562971.1 CDS CPE2055 NC_003366.1 2347871 2349520 D catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 2347871..2349520 Clostridium perfringens str. 13 990370 NP_562972.1 CDS CPE2056 NC_003366.1 2349564 2350070 R similar to pir:H81344 hypothetical protein Cj0733 from Campylobacter jejuni (strain NCTC 11168) (212 aa); 28.2% identity in 177 aa overlap; hypothetical protein complement(2349564..2350070) Clostridium perfringens str. 13 990371 NP_562973.1 CDS CPE2057 NC_003366.1 2350288 2350662 R no significant homology; hypothetical protein complement(2350288..2350662) Clostridium perfringens str. 13 990372 NP_562974.1 CDS CPE2058 NC_003366.1 2350872 2352266 R similar to gp:AB010789_2 glutamate decarboxylase from Lactococcus lactis (466 aa); 70.5% identity in 464 aa overlap; glutamate decarboxylase complement(2350872..2352266) Clostridium perfringens str. 13 990373 NP_562975.1 CDS CPE2059 NC_003366.1 2352852 2353907 R similar to sp:YHIM_ECOLI HYPOTHETICAL 39.2 KDA PROTEIN IN RHSB-PIT INTERGENIC REGION from Escherichia coli (364 aa); 49.2% identity in 356 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein complement(2352852..2353907) Clostridium perfringens str. 13 990374 NP_562976.1 CDS CPE2060 NC_003366.1 2354027 2355445 R similar to gp:AF309077_1 glutamate:gamma-aminobutyrate antiporter from Listeria monocytogenes (501 aa); 68.8% identity in 464 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; glutamate gamma-aminobutyrate antiporter complement(2354027..2355445) Clostridium perfringens str. 13 990375 NP_562977.1 CDS CPE2061 NC_003366.1 2356148 2359663 R similar to gp:CPA17727_2 pyruvate ferredoxin oxidoreductase from Clostridium pasteurianum (1175 aa); 73.6% identity in 1167 aa overlap; pyruvate-flavodoxin oxidoreductase complement(2356148..2359663) Clostridium perfringens str. 13 990376 NP_562978.1 CDS CPE2062 NC_003366.1 2359768 2360193 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(2359768..2360193) Clostridium perfringens str. 13 990377 NP_562979.1 CDS murG NC_003366.1 2360400 2361473 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase complement(2360400..2361473) Clostridium perfringens str. 13 990378 NP_562980.1 CDS CPE2064 NC_003366.1 2361658 2361837 D similar to pir:JN0082 small acid-soluble spore protein C1 from Clostridium perfringens (59 aa); 100% identity in 59 aa overlap; small acid-soluble spore protein C1 2361658..2361837 Clostridium perfringens str. 13 990379 NP_562981.1 CDS recJ NC_003366.1 2361959 2363737 R similar to pir:H69980 single-strand DNA-specific exonuclease homolog yrvE from Bacillus subtilis (786 aa); 34.5% identity in 585 aa overlap. 1 transmembrane region was found by PSORT; single-stranded-DNA-specific exonuclease RecJ complement(2361959..2363737) Clostridium perfringens str. 13 990380 NP_562982.1 CDS CPE2066 NC_003366.1 2363749 2364960 R similar to sp:Y219_RICPR HYPOTHETICAL ZINC PROTEASE RP219 (EC 3.4.99.-) from Rickettsia prowazekii (412 aa); 24.5% identity in 388 aa overlap; M16 family peptidase complement(2363749..2364960) Clostridium perfringens str. 13 990381 NP_562983.1 CDS CPE2067 NC_003366.1 2365174 2365755 R similar to pir:C81363 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein Cj0899c from Campylobacter jejuni (strain NCTC 11168) (187 aa); 31.7% identity in 183 aa overlap. 1 transmembrane region was found by PSORT; DJ-1 family protein complement(2365174..2365755) Clostridium perfringens str. 13 990382 NP_562984.1 CDS parC NC_003366.1 2365761 2368700 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(2365761..2368700) Clostridium perfringens str. 13 990383 NP_562985.1 CDS parE NC_003366.1 2368714 2370666 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(2368714..2370666) Clostridium perfringens str. 13 990384 NP_562986.1 CDS CPE2070 NC_003366.1 2370650 2371720 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(2370650..2371720) Clostridium perfringens str. 13 990385 NP_562987.1 CDS CPE2071 NC_003366.1 2371965 2373365 R similar to prf:2302324B rfbB gene from Salmonella enterica (459 aa); 32% identity in 406 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; glycosyl transferase family protein complement(2371965..2373365) Clostridium perfringens str. 13 990386 NP_562988.1 CDS CPE2072 NC_003366.1 2374217 2375455 D similar to gp:BCE243712_10 UV-endonuclease from Bacillus cereus (317 aa); 31.4% identity in 293 aa overlap; UV damage endonuclease 2374217..2375455 Clostridium perfringens str. 13 990387 NP_562989.1 CDS CPE2073 NC_003366.1 2375540 2376148 D similar to pir:H69987 hypothetical protein ytaF from Bacillus subtilis (159 aa); 34% identity in 144 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; sporulation protein YtaF 2375540..2376148 Clostridium perfringens str. 13 990388 NP_562990.1 CDS CPE2074 NC_003366.1 2376317 2377486 R enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase complement(2376317..2377486) Clostridium perfringens str. 13 990389 NP_562991.1 CDS CPE2075 NC_003366.1 2377731 2379209 R similar to pir:B64829 membrane protein b0899 from Escherichia coli (540 aa); 56.6% identity in 486 aa overlap; amino acid permease complement(2377731..2379209) Clostridium perfringens str. 13 990390 NP_562992.1 CDS CPE2076 NC_003366.1 2379557 2381797 R similar to gp:AAC252161_6 alpha-glucosidase from Alicyclobacillus acidocaldarius (728 aa); 43.5% identity in 591 aa overlap; alpha-glucosidase complement(2379557..2381797) Clostridium perfringens str. 13 990391 NP_562993.1 CDS CPE2077 NC_003366.1 2381846 2382739 R similar to gpu:AP001509_224 transcriptional regulator from Bacillus halodurans (302 aa); 35.5% identity in 293 aa overlap. 1 transmembrane region was found by PSORT; ROK family protein complement(2381846..2382739) Clostridium perfringens str. 13 990392 NP_562994.1 CDS CPE2078 NC_003366.1 2382880 2384328 R similar to gpu:AP001509_234 BH0796 gene product from Bacillus halodurans (500 aa); 45.8% identity in 474 aa overlap; hypothetical protein complement(2382880..2384328) Clostridium perfringens str. 13 990393 NP_562995.1 CDS CPE2079 NC_003366.1 2384713 2385207 D similar to pir:E82970 hypothetical protein PA5409 from Pseudomonas aeruginosa (strain PAO1) (186 aa); 28.3% identity in 106 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 2384713..2385207 Clostridium perfringens str. 13 990394 NP_562996.1 CDS CPE2080 NC_003366.1 2385275 2388409 R similar to gpu:AP001509_229 alpha-mannosidase from Bacillus halodurans (1039 aa); 37.2% identity in 1038 aa overlap; alpha-mannosidase complement(2385275..2388409) Clostridium perfringens str. 13 990395 NP_562997.1 CDS CPE2081 NC_003366.1 2388727 2389683 R similar to gpu:AP001509_233 sugar transport system (permease) (binding protein dependent transporter) from Bacillus halodurans (322 aa); 54.1% identity in 316 aa overlap. 6 transmembrane regions were found by PSORT.; permease; ABC transporter complement(2388727..2389683) Clostridium perfringens str. 13 990396 NP_562998.1 CDS CPE2082 NC_003366.1 2389701 2390669 R similar to gpu:AP001509_232 sugar transport system (permease) (binding protein dependent transporter) from Bacillus halodurans (312 aa); 55.6% identity in 304 aa overlap. 4 transmembrane regions were found by PSORT.; permease; ABC transporter complement(2389701..2390669) Clostridium perfringens str. 13 990397 NP_562999.1 CDS moaC NC_003366.1 2390899 2391375 R MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC complement(2390899..2391375) Clostridium perfringens str. 13 990398 NP_563000.1 CDS modB NC_003366.1 2391414 2392070 R similar to pir:S77084 ABC-type transport protein sll0739 from Synechocystis sp. (strain PCC 6803) (615 aa); 35.9% identity in 170 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; permease; molybdate ABC transporter permease complement(2391414..2392070) Clostridium perfringens str. 13 990399 NP_563001.1 CDS modA NC_003366.1 2392067 2392843 R similar to pir:A70040 molybdate-binding protein homolog yvg from Bacillus subtilis (260 aa); 44.3% identity in 246 aa overlap. N-terminal signal sequence was found by PSORT; binding protein; molybdenum ABC transporter complement(2392067..2392843) Clostridium perfringens str. 13 990400 NP_563002.1 CDS moaB NC_003366.1 2392828 2393319 R partially similar to sp:CNX1_ARATH MOLYBDOPTERIN BIOSYNTHESIS CNX1 PROTEIN (MOLYBDENUM COFACTOR BIOSYNTHESIS ENZYME CNX1) from Arabidopsis thaliana (670 aa); 49.4% identity in 158 aa overlap; molybdenum cofactor synthesis protein complement(2392828..2393319) Clostridium perfringens str. 13 990401 NP_563003.1 CDS CPE2087 NC_003366.1 2393660 2395183 R similar to gpu:AP001509_231 two-component sensor response regulator from Bacillus halodurans (508 aa); 29.2% identity in 507 aa overlap; AraC family transcriptional regulator complement(2393660..2395183) Clostridium perfringens str. 13 990402 NP_563004.1 CDS CPE2088 NC_003366.1 2395188 2396924 R similar to gpu:AP001509_230 two-component sensor histidine kinase from Bacillus halodurans (587 aa); 27.2% identity in 569 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; sensor histidine kinase complement(2395188..2396924) Clostridium perfringens str. 13 990403 NP_563005.1 CDS CPE2089 NC_003366.1 2397146 2397823 D similar to gpu:AP001508_211 BH0488 gene product from Bacillus halodurans (216 aa); 22.7% identity in 185 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 2397146..2397823 Clostridium perfringens str. 13 990404 NP_563006.1 CDS fmhB NC_003366.1 2398089 2399426 D similar to gp:AF106850_1 FmhB from Staphylococcus aureus (421 aa); 30.3% identity in 439 aa overlap; FemAB family protein 2398089..2399426 Clostridium perfringens str. 13 990405 NP_563007.1 CDS CPE2091 NC_003366.1 2399789 2400094 D similar to gpu:AP001509_13 BH0575 gene product from Bacillus halodurans (102 aa); 55.4% identity in 101 aa overlap; PadR family transcriptional regulator 2399789..2400094 Clostridium perfringens str. 13 990406 NP_563008.1 CDS CPE2092 NC_003366.1 2400141 2400878 R similar to sp:YXEO_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BINDING PROTEIN YXEO from Bacillus subtilis (249 aa); 61.4% identity in 241 aa overlap; ATP-binding protein; amino acid ABC transporter complement(2400141..2400878) Clostridium perfringens str. 13 990407 NP_563009.1 CDS CPE2093 NC_003366.1 2400897 2402405 R similar to gp:D90907_46 glutamine-binding periplasmic protein from Synechocystis sp. (strain PCC 6803) (530 aa); 34.7% identity in 461 aa overlap. 3 transmembrane regions were found by PSORT.; permease; amino acid ABC transporter complement(2400897..2402405) Clostridium perfringens str. 13 990408 NP_563010.1 CDS CPE2094 NC_003366.1 2402578 2403357 D partially similar to prf:2409329F hydrogenase from Methanosarcina barkeri (122 aa); 40.7% identity in 54 aa overlap; hypothetical protein 2402578..2403357 Clostridium perfringens str. 13 990409 NP_563011.1 CDS CPE2095 NC_003366.1 2403482 2403898 R similar to pir:A75034 hypothetical protein PAB1546 from Pyrococcus abyssi (strain Orsay) (156 aa); 26.9% identity in 119 aa overlap; hypothetical protein complement(2403482..2403898) Clostridium perfringens str. 13 990410 NP_563012.1 CDS CPE2096 NC_003366.1 2404405 2405226 R similar to gp:AB028738_8 hypothetical 25.9-kD protein from Clostridium perfringens (215 aa); 100% identity in 186 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2404405..2405226) Clostridium perfringens str. 13 990411 NP_563013.1 CDS CPE2097 NC_003366.1 2405245 2406501 R similar to gp:AB028738_6 hypothetical 48.7-kD protein from Clostridium perfringens (418 aa); 96.9% identity in 418 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2405245..2406501) Clostridium perfringens str. 13 990412 NP_563014.1 CDS virJ NC_003366.1 2406617 2408065 R similar to gp:AB028738_5 Sensor histidine kinase VirJ from Clostridium perfringens (471 aa); 84.6% identity in 469 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; two-component sensor histidine kinase complement(2406617..2408065) Clostridium perfringens str. 13 990413 NP_563015.1 CDS virI NC_003366.1 2408055 2408753 R similar to gp:AB028738_4 Response regulator protein VirI from Clostridium perfringens (232 aa); 100% identity in 232 aa overlap; two-component response regulator complement(2408055..2408753) Clostridium perfringens str. 13 990414 NP_563016.1 CDS CPE2100 NC_003366.1 2408956 2409351 R similar to gp:AB028738_3 hypothetical 15.2-kD protein from Clostridium perfringens (131 aa); 89.3% identity in 131 aa overlap; hypothetical protein complement(2408956..2409351) Clostridium perfringens str. 13 990415 NP_563017.1 CDS CPE2101 NC_003366.1 2409484 2409774 R similar to gp:AB028738_2 hypothetical 11.0-kD protein from Clostridium perfringens (96 aa); 100% identity in 96 aa overlap; hypothetical protein complement(2409484..2409774) Clostridium perfringens str. 13 990416 NP_563018.1 CDS CPE2102 NC_003366.1 2409786 2411543 R similar to gp:AB028738_1 probable ATP-dependent RNA helicase from Clostridium perfringens (585 aa); 98.1% identity in 585 aa overlap; helicase domain-containing protein complement(2409786..2411543) Clostridium perfringens str. 13 990417 NP_563019.1 CDS CPE2103 NC_003366.1 2411804 2412664 D partially similar to gp:AE001768_5 ribosomal protein L11 methyltransferase, from Thermotoga maritima (264 aa); 34.5% identity in 177 aa overlap. 1 transmembrane region was found by PSORT; 50S ribosomal protein L11 methyltransferase 2411804..2412664 Clostridium perfringens str. 13 990418 NP_563020.1 CDS CPE2104 NC_003366.1 2413069 2413584 R similar to pir:F72239 hypothetical protein from Thermotoga maritima (strain MSB8) (211 aa); 20.8% identity in 154 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein complement(2413069..2413584) Clostridium perfringens str. 13 990419 NP_563021.1 CDS CPE2105 NC_003366.1 2413602 2413976 R similar to pir:E72239 hypothetical protein TM1554 from Thermotoga maritima (strain MSB8) (106 aa); 40% identity in 50 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2413602..2413976) Clostridium perfringens str. 13 990420 NP_563022.1 CDS apbE NC_003366.1 2413977 2415008 R similar to sp:APBE_TREPA THIAMINE BIOSYNTHESIS LIPOPROTEIN APBE PRECURSOR from Treponema pallidum (362 aa); 33.6% identity in 286 aa overlap. N-terminal signal sequence was found by PSORT; thiamine biosynthesis lipoprotein complement(2413977..2415008) Clostridium perfringens str. 13 990421 NP_563023.1 CDS CPE2107 NC_003366.1 2415180 2418425 R partially similar to pir:T28317 ORF MSV156 hypothetical protein from Melanoplus sanguinipes entomopoxvirus (1127 aa); 21% identity in 675 aa overlap; hypothetical protein complement(2415180..2418425) Clostridium perfringens str. 13 990422 NP_563024.1 CDS CPE2108 NC_003366.1 2418438 2419484 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2418438..2419484) Clostridium perfringens str. 13 990423 NP_563025.1 CDS CPE2109 NC_003366.1 2419685 2420134 R similar to pir:D69439 conserved hypothetical protein AF1517 from Archaeoglobus fulgidus (162 aa); 27.8% identity in 97 aa overlap; hypothetical protein complement(2419685..2420134) Clostridium perfringens str. 13 990424 NP_563026.1 CDS CPE2110 NC_003366.1 2420422 2421111 D no significant homology 5 transmembrane regions were found by PSORT.; hypothetical protein 2420422..2421111 Clostridium perfringens str. 13 990425 NP_563027.1 CDS CPE2111 NC_003366.1 2421136 2421843 D partially similar to pir:C75537 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (406 aa); 22.6% identity in 137 aa overlap. ATT start. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 2421136..2421843 Clostridium perfringens str. 13 990426 NP_563028.1 CDS CPE2112 NC_003366.1 2421968 2423722 R partially similar to prf:2204349A ORF 1 from Clostridium perfringens (242 aa); 41.4% identity in 232 aa overlap. 2 transmembrane regions were found by PSORT.; subtilase complement(2421968..2423722) Clostridium perfringens str. 13 990427 NP_563029.1 CDS CPE2113 NC_003366.1 2423724 2425544 R partially similar to prf:2204349A ORF 1 from Clostridium perfringens (242 aa); 40.6% identity in 229 aa overlap. ATA start. 1 transmembrane region was found by PSORT; hypothetical protein complement(2423724..2425544) Clostridium perfringens str. 13 990428 NP_563030.1 CDS CPE2114 NC_003366.1 2425791 2427146 R similar to gpu:AB023045_18 RNA methyltransferase-like protein from Arabidopsis thaliana (554 aa); 36.2% identity in 447 aa overlap; 23S rRNA (uracil-5-)-methyltransferase RumA complement(2425791..2427146) Clostridium perfringens str. 13 990429 NP_563031.1 CDS CPE2115 NC_003366.1 2427174 2427623 R no significant homology 2 transmembrane regions were found by PSORT.; hypothetical protein complement(2427174..2427623) Clostridium perfringens str. 13 990430 NP_563032.1 CDS selB NC_003366.1 2427810 2429717 R similar to gp:EAC245960_3 elongation factor SelB from Eubacterium acidaminophilum (626 aa); 43.8% identity in 635 aa overlap. 1 transmembrane region was found by PSORT; selenocysteine-specific translation elongation factor complement(2427810..2429717) Clostridium perfringens str. 13 990431 NP_563033.1 CDS selA NC_003366.1 2429718 2431106 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase complement(2429718..2431106) Clostridium perfringens str. 13 990432 NP_563034.1 CDS selD NC_003366.1 2431123 2431863 R similar to gp:EAC245960_1 selenophosphate synthetase from Eubacterium acidaminophilum (347 aa); 57.4% identity in 324 aa overlap. N-terminal signal sequence was found by PSORT; selenophosphate synthetase complement(2431123..2431863) Clostridium perfringens str. 13 990433 NP_563035.1 CDS CPE2119 NC_003366.1 2431965 2432156 D no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2431965..2432156 Clostridium perfringens str. 13 990434 NP_563036.1 CDS comEA NC_003366.1 2432199 2432981 R similar to sp:CME1_BACSU COME OPERON PROTEIN 1 from Bacillus subtili (205 aa); 39.9% identity in 148 aa overlap. N-terminal signal sequence was found by PSORT; competence protein ComE complement(2432199..2432981) Clostridium perfringens str. 13 990435 NP_563037.1 CDS dacF NC_003366.1 2433177 2434511 D similar to gp:CPDACF_1 dacF gene product from Clostridium perfringens (96 aa); 94.8% identity in 96 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; D-alanyl-D-alanine carboxypeptidase 2433177..2434511 Clostridium perfringens str. 13 990436 NP_563038.1 CDS CPE2122 NC_003366.1 2434543 2435439 R similar to sp:YJBO_BACSU HYPOTHETICAL 31.5 KDA PROTEIN IN MECA-TENA INTERGENIC REGION from Bacillus subtilis (283 aa); 39.8% identity in 269 aa overlap; hypothetical protein complement(2434543..2435439) Clostridium perfringens str. 13 990437 NP_563039.1 CDS CPE2123 NC_003366.1 2435436 2436749 R similar to pir:S75661 membrane-bound protein lytR from Synechocystis sp. (strain PCC 6803) (463 aa); 31% identity in 358 aa overlap. 1 transmembrane region was found by PSORT; membrane-bound protein; membrane-bound protein complement(2435436..2436749) Clostridium perfringens str. 13 990438 NP_563040.1 CDS CPE2124 NC_003366.1 2436772 2437341 R similar to gpu:AP001511_216 BH1327 gene product from Bacillus halodurans (187 aa); 44.1% identity in 179 aa overlap; HD domain-containing protein complement(2436772..2437341) Clostridium perfringens str. 13 990439 NP_563041.1 CDS nadD NC_003366.1 2437344 2437952 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(2437344..2437952) Clostridium perfringens str. 13 990440 NP_563042.1 CDS CPE2126 NC_003366.1 2437954 2438256 R similar to sp:YQEI_BACSU HYPOTHETICAL 10.8 KDA PROTEIN IN AROD-COMER INTERGENIC REGION from Bacillus subtilis (96 aa); 46.9% identity in 96 aa overlap; RNA-binding protein complement(2437954..2438256) Clostridium perfringens str. 13 990441 NP_563043.1 CDS obgE NC_003366.1 2438274 2439560 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(2438274..2439560) Clostridium perfringens str. 13 990442 NP_563044.1 CDS rpmA NC_003366.1 2439728 2440030 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(2439728..2440030) Clostridium perfringens str. 13 990443 NP_563045.1 CDS CPE2129 NC_003366.1 2440034 2440339 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(2440034..2440339) Clostridium perfringens str. 13 990444 NP_563046.1 CDS rplU NC_003366.1 2440415 2440726 R similar to pir:H81212 50S ribosomal protein L21 NMB0325 from Neisseria meningitidis (group B strain MD58, group A strain Z2491) (102 aa); 48.5% identity in 101 aa overlap; 50S ribosomal protein L21 complement(2440415..2440726) Clostridium perfringens str. 13 990445 NP_563047.1 CDS rng NC_003366.1 2440852 2442294 R similar to sp:RNG_HAEIN RIBONUCLEASE G (EC 3.1.4.-) (RNASE G) (CYTOPLASMIC AXIAL FILAMENT PROTEIN) from Haemophilus influenzae (strain Rd KW20) (491 aa); 36.5% identity in 394 aa overlap; ribonuclease, Rne/Rng family complement(2440852..2442294) Clostridium perfringens str. 13 990446 NP_563048.1 CDS CPE2132 NC_003366.1 2442311 2443018 R partially similar to gp:SCC88_11 hypothetical protein SCC88.11c from Streptomyces coelicolor A3(2) (258 aa); 28.3% identity in 159 aa overlap; hypothetical protein complement(2442311..2443018) Clostridium perfringens str. 13 990447 NP_563049.1 CDS CPE2133 NC_003366.1 2442996 2444849 R similar to pir:H72336 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (599 aa); 41.3% identity in 605 aa overlap; radical SAM domain-containing protein complement(2442996..2444849) Clostridium perfringens str. 13 990448 NP_563050.1 CDS CPE2134 NC_003366.1 2444981 2445835 R similar to N-terminal of pir:A69209 conserved hypothetical protein MTH816 from Methanobacterium thermoautotrophicum (strain Delta H) (341 aa); 31.7% identity in 139 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; M50 family peptidase complement(2444981..2445835) Clostridium perfringens str. 13 990449 NP_563051.1 CDS CPE2135 NC_003366.1 2445832 2446674 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(2445832..2446674) Clostridium perfringens str. 13 990450 NP_563052.1 CDS spoVE NC_003366.1 2446824 2447948 R similar to gp:SCY14206_5 sfr gene product from Streptomyces coelicolor A3(2) (372 aa); 29.3% identity in 355 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; FtsW/RodA/SpoVE family cell cycle protein complement(2446824..2447948) Clostridium perfringens str. 13 990451 NP_563053.1 CDS minE NC_003366.1 2448096 2448368 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(2448096..2448368) Clostridium perfringens str. 13 990452 NP_563054.1 CDS minD NC_003366.1 2448379 2449176 R similar to gpu:AP001517_149 septum site-determining protein from Bacillus halodurans (264 aa); 55.4% identity in 240 aa overlap; septum site-determining protein MinD complement(2448379..2449176) Clostridium perfringens str. 13 990453 NP_563055.1 CDS minC NC_003366.1 2449205 2449840 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(2449205..2449840) Clostridium perfringens str. 13 990454 NP_563056.1 CDS CPE2140 NC_003366.1 2450087 2453158 R partially similar to gp:AF147448_1 penicillin-binding protein 2 from Pseudomonas aeruginosa (646 aa); 29.4% identity in 333 aa overlap. N-terminal signal sequence was found by PSORT; penicillin-binding protein 2 complement(2450087..2453158) Clostridium perfringens str. 13 990455 NP_563057.1 CDS CPE2141 NC_003366.1 2453167 2453664 R no significant homology N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; rod shape-determining protein MreD complement(2453167..2453664) Clostridium perfringens str. 13 990456 NP_563058.1 CDS mreC NC_003366.1 2453680 2454531 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(2453680..2454531) Clostridium perfringens str. 13 990457 NP_563059.1 CDS mreB NC_003366.1 2454535 2455563 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(2454535..2455563) Clostridium perfringens str. 13 990458 NP_563060.1 CDS radC NC_003366.1 2455583 2456266 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(2455583..2456266) Clostridium perfringens str. 13 990459 NP_563061.1 CDS maf NC_003366.1 2456313 2456891 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(2456313..2456891) Clostridium perfringens str. 13 990460 NP_563062.1 CDS CPE2146 NC_003366.1 2457117 2457920 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(2457117..2457920) Clostridium perfringens str. 13 990461 NP_563063.1 CDS CPE2147 NC_003366.1 2458182 2459000 R similar to gpu:AP001515_17 BH2283 gene product from Bacillus haloduran (290 aa); 29.3% identity in 249 aa overlap; hypothetical protein complement(2458182..2459000) Clostridium perfringens str. 13 990462 NP_563064.1 CDS pepD NC_003366.1 2459328 2460779 R similar to gpu:AE004299_7 aminoacyl-histidine dipeptidase from Vibrio cholerae (534 aa); 39.5% identity in 476 aa overlap; aminoacyl-histidine dipeptidase complement(2459328..2460779) Clostridium perfringens str. 13 990463 NP_563065.1 CDS pykA NC_003366.1 2460912 2462336 D similar to gpu:AP001517_285 pyruvate kinase (EC 2.7.1.40) from Bacillus halodurans (584 aa); 50% identity in 474 aa overlap; pyruvate kinase 2460912..2462336 Clostridium perfringens str. 13 990464 NP_563066.1 CDS rpsA NC_003366.1 2462453 2463589 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(2462453..2463589) Clostridium perfringens str. 13 990465 NP_563067.1 CDS CPE2151 NC_003366.1 2463735 2463938 R similar to pir:F70041 probable mercuric ion-binding protein yvgY from Bacillus subtilis (69 aa); 27.4% identity in 62 aa overlap; heavy metal binding protein complement(2463735..2463938) Clostridium perfringens str. 13 990466 NP_563068.1 CDS CPE2152 NC_003366.1 2464043 2464807 R similar to sp:YAAA_HAEIN HYPOTHETICAL PROTEIN HI0984 from Haemophilus influenzae (strain Rd KW20) (272 aa); 43.5% identity in 255 aa overlap; hypothetical protein complement(2464043..2464807) Clostridium perfringens str. 13 990467 NP_563069.1 CDS guaB NC_003366.1 2464973 2465383 R similar to gpu:AP001516_139 inosine-5'-monophosphate dehydrogenase from Bacillus halodurans (144 aa); 64% identity in 136 aa overlap; inosine-5'-monophosphate dehydrogenase complement(2464973..2465383) Clostridium perfringens str. 13 990468 NP_563070.1 CDS CPE2154 NC_003366.1 2465469 2466371 R partially similar to sp:DPO3_THEMA DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (EC 2.7.7.7) (POLIII) from Thermotoga maritima (strain MSB8 (1367 aa); 33.1% identity in 151 aa overlap; exonuclease complement(2465469..2466371) Clostridium perfringens str. 13 990469 NP_563071.1 CDS CPE2155 NC_003366.1 2466626 2468380 R similar to pir:A64696 hypothetical protein HP0426/HP1409 from Helicobacter pylori (strain 26695) (578 aa); 26% identity in 557 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein complement(2466626..2468380) Clostridium perfringens str. 13 990470 NP_563072.1 CDS CPE2156 NC_003366.1 2468553 2470340 R partially similar to sp:MUTS_AQUPY DNA MISMATCH REPAIR PROTEIN MUTS from Aquifex pyrophilus (855 aa); 28.3% identity in 258 aa overlap. 3 transmembrane regions were found by PSORT.; MutS domain-containing protein complement(2468553..2470340) Clostridium perfringens str. 13 990471 NP_563073.1 CDS CPE2157 NC_003366.1 2470664 2472193 R similar to gpu:AP001510_19 PTS system, glucose-specific enzyme II, A component from Bacillus halodurans (675 aa); 57.3% identity in 504 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; glucose-specific enzyme IIA component; PTS system glucose-specific transporter subunit IIBC complement(2470664..2472193) Clostridium perfringens str. 13 990472 NP_563074.1 CDS CPE2158 NC_003366.1 2472360 2473256 R similar to pir:A69756 adhesion protein homolog ycdH from Bacillus subtilis (319 aa); 33% identity in 315 aa overlap. N-terminal signal sequence was found by PSORT; ABC transporter substrate-binding protein complement(2472360..2473256) Clostridium perfringens str. 13 990473 NP_563075.1 CDS CPE2159 NC_003366.1 2473482 2476250 R similar to pir:A64465 hypothetical protein MJ1322 from Methanococcus jannaschii (1005 aa); 28.1% identity in 431 aa overlap. 2 transmembrane regions were found by PSORT.; hypothetical protein complement(2473482..2476250) Clostridium perfringens str. 13 990474 NP_563076.1 CDS CPE2160 NC_003366.1 2476240 2477382 R similar to pir:A69819 probable phosphoesterase (EC 3.1.-.-) yhaO from Bacillus subtilis (408 aa); 28% identity in 296 aa overlap. 1 transmembrane region was found by PSORT; phosphoesterase complement(2476240..2477382) Clostridium perfringens str. 13 990475 NP_563077.1 CDS CPE2161 NC_003366.1 2477660 2477842 R similar to pir:A54537 small acid-soluble spore ssp1 from Clostridium perfringens (60 aa); 100% identity in 60 aa overlap; small acid-soluble protein Ssp1 complement(2477660..2477842) Clostridium perfringens str. 13 990476 NP_563078.1 CDS cpdC NC_003366.1 2477982 2480159 R similar to gpu:AE004311_7 2`,3`-cyclic-nucleotide 2`-phosphodiesterase, from Vibrio cholerae (634 aa); 52.5% identity in 598 aa overlap. N-terminal signal sequence was found by PSORT; 2`,3`-cyclic-nucleotide 2`-phosphodiesterase complement(2477982..2480159) Clostridium perfringens str. 13 990477 NP_563079.1 CDS CPE2163 NC_003366.1 2480759 2481379 R similar to pir:H72290 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (215 aa); 31.2% identity in 205 aa overlap; hypothetical protein complement(2480759..2481379) Clostridium perfringens str. 13 990480 NP_563080.1 CDS CPE2164 NC_003366.1 2481679 2482143 D similar to sp:YDIB_BACSU HYPOTHETICAL 17.9 KDA PROTEIN IN PHOB-GROES INTERGENIC REGION from Bacillus subtilis (158 aa); 46.5% identity in 142 aa overlap; hypothetical protein 2481679..2482143 Clostridium perfringens str. 13 990481 NP_563081.1 CDS CPE2165 NC_003366.1 2482137 2482841 D similar to pir:D69786 glycoprotein endopeptidase homolog ydi from Bacillus subtilis (229 aa); 33.6% identity in 232 aa overlap; glycoprotease 2482137..2482841 Clostridium perfringens str. 13 990482 NP_563082.1 CDS CPE2166 NC_003366.1 2482841 2483287 D similar to pir:E69786 ribosomal-protein-alanine N-acetyltransfer homolog ydiD from Bacillus subtilis (151 aa); 44.9% identity in 136 aa overlap; ribosomal-protein-alanine acetyltransferase 2482841..2483287 Clostridium perfringens str. 13 990483 NP_563083.1 CDS CPE2167 NC_003366.1 2483381 2483977 R similar to sp:YPAA_BACSU HYPOTHETICAL 20.5 KDA PROTEIN IN SERA-FER INTERGENIC REGION from Bacillus subtilis (190 aa); 35.7% identity in 171 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein complement(2483381..2483977) Clostridium perfringens str. 13 990484 NP_563084.1 CDS CPE2168 NC_003366.1 2484325 2486487 R similar to gpu:AP001508_254 BH0531 gene product from Bacillus halodurans (728 aa); 53.3% identity in 709 aa overlap; hypothetical protein complement(2484325..2486487) Clostridium perfringens str. 13 990485 NP_563085.1 CDS CPE2169 NC_003366.1 2486599 2487942 D partially similar to gpu:AE003921_10 hypothetical protein from Xylella fastidiosa (529 aa); 29.5% identity in 207 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; peptidase 2486599..2487942 Clostridium perfringens str. 13 990486 NP_563086.1 CDS prfB NC_003366.1 2488191 2489162 R catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA; peptide chain release factor 2 complement(2488191..2489162) Clostridium perfringens str. 13 990487 NP_563087.1 CDS secA NC_003366.1 2489545 2492067 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(2489545..2492067) Clostridium perfringens str. 13 990488 NP_563088.1 CDS CPE2172 NC_003366.1 2492302 2492841 R similar to gpu:AP001519_123 ribosomal protein S30AE family from Bacillus haloduran (187 aa); 48.9% identity in 174 aa overlap; 30S ribosomal protein S30 complement(2492302..2492841) Clostridium perfringens str. 13 990489 NP_563089.1 CDS comFC NC_003366.1 2493292 2493951 R similar to gp:AE001803_4 comFC protein, from Thermotoga maritima (202 aa); 27.7% identity in 184 aa overlap; late competence protein; comFC protein complement(2493292..2493951) Clostridium perfringens str. 13 990490 NP_563090.1 CDS CPE2174 NC_003366.1 2493927 2494889 R no significant homology; hypothetical protein complement(2493927..2494889) Clostridium perfringens str. 13 990491 NP_563091.1 CDS recD NC_003366.1 2494907 2497141 R similar to gp:SCC57A_8 deoxyribonuclease from Streptomyces coelicolor A3(2) (753 aa); 37.7% identity in 732 aa overlap; RecD/TraA family helicase complement(2494907..2497141) Clostridium perfringens str. 13 990492 NP_563092.1 CDS nagA NC_003366.1 2497278 2498414 D similar to gpu:AP001508_144 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Bacillus halodurans (397 aa); 40.7% identity in 376 aa overlap. 1 transmembrane region was found by PSORT; N-acetylglucosamine-6-phosphate deacetylase 2497278..2498414 Clostridium perfringens str. 13 990493 NP_563093.2 CDS metK NC_003366.1 2498554 2499729 R methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(2498554..2499729) Clostridium perfringens str. 13 990494 NP_563094.1 CDS CPE2178 NC_003366.1 2500946 2501590 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2500946..2501590) Clostridium perfringens str. 13 990502 NP_563095.1 CDS CPE2179 NC_003366.1 2501696 2502226 D similar to sp:YYAC_BACSU HYPOTHETICAL 22.5 KDA PROTEIN IN RPSF-SPO0J INTERGENIC REGION from Bacillus subtilis (205 aa); 38.9% identity in 149 aa overlap; sporulation protein YyaC 2501696..2502226 Clostridium perfringens str. 13 990503 NP_563096.1 CDS mreV NC_003366.1 2502265 2503302 R similar to sp:MBL_BACCE MREB-LIKE PROTEIN (MBL PROTEIN) from Bacillus cereus (333 aa); 52.9% identity in 323 aa overlap. 1 transmembrane region was found by PSORT; MreB-like protein; rod shape-determining protein Mbl complement(2502265..2503302) Clostridium perfringens str. 13 990504 NP_563097.1 CDS spoIIID NC_003366.1 2503393 2503644 R similar to sp:SP3D_BACSU STAGE III SPORULATION PROTEIN D (14 KDA TRANSCRIPTION FACTOR) from Bacillus subtilis (93 aa); 61.3% identity in 80 aa overlap; stage III sporulation protein D complement(2503393..2503644) Clostridium perfringens str. 13 990505 NP_563098.1 CDS CPE2182 NC_003366.1 2503719 2504489 R similar to C-terminal region of gpu:AF157831_2 43 kDa antigen from Bartonella bacilliformis (401 aa); 31.2% identity in 157 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2503719..2504489) Clostridium perfringens str. 13 990506 NP_563099.1 CDS spoIID NC_003366.1 2504606 2505628 R similar to pir:S27530 sporulation protein from Clostridium acetobutylicum (362 aa); 47.4% identity in 272 aa overlap. N-terminal signal sequence was found by PSORT; stage II sporulation protein D complement(2504606..2505628) Clostridium perfringens str. 13 990507 NP_563100.1 CDS murA NC_003366.1 2505740 2507005 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(2505740..2507005) Clostridium perfringens str. 13 990508 NP_563101.1 CDS CPE2185 NC_003366.1 2507028 2507672 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2507028..2507672) Clostridium perfringens str. 13 990509 NP_563102.1 CDS atpC NC_003366.1 2507854 2508255 R produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit epsilon complement(2507854..2508255) Clostridium perfringens str. 13 990510 NP_563103.1 CDS atpB NC_003366.1 2508271 2509668 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta complement(2508271..2509668) Clostridium perfringens str. 13 990511 NP_563104.1 CDS atpG NC_003366.1 2509682 2510533 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma complement(2509682..2510533) Clostridium perfringens str. 13 990512 NP_563105.1 CDS atpA NC_003366.1 2510598 2512106 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha complement(2510598..2512106) Clostridium perfringens str. 13 990513 NP_563106.1 CDS atpD NC_003366.1 2512117 2512656 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta complement(2512117..2512656) Clostridium perfringens str. 13 990514 NP_563107.1 CDS atpF NC_003366.1 2512659 2513138 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel; ATP synthase F0F1 subunit B complement(2512659..2513138) Clostridium perfringens str. 13 990515 NP_563108.1 CDS atpL NC_003366.1 2513238 2513456 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C complement(2513238..2513456) Clostridium perfringens str. 13 990516 NP_563109.1 CDS atpI NC_003366.1 2513517 2514191 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A complement(2513517..2514191) Clostridium perfringens str. 13 990517 NP_563110.1 CDS CPE2194 NC_003366.1 2514247 2514612 R no significant homology N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein complement(2514247..2514612) Clostridium perfringens str. 13 990518 NP_563111.1 CDS atoB NC_003366.1 2515294 2516472 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase complement(2515294..2516472) Clostridium perfringens str. 13 990519 NP_563112.1 CDS CPE2196 NC_003366.1 2516741 2517895 R similar to pir:A72304 UDP-N-acetylglucosamine 2-epimerase from Thermotoga maritima (strain MSB8) (378 aa); 58.5% identity in 378 aa overlap; UDP-N-acetylglucosamine 2-epimerase complement(2516741..2517895) Clostridium perfringens str. 13 990520 NP_563113.1 CDS upp NC_003366.1 2517959 2518588 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2517959..2518588) Clostridium perfringens str. 13 990521 NP_563114.1 CDS CPE2198 NC_003366.1 2518633 2519082 R catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B complement(2518633..2519082) Clostridium perfringens str. 13 990522 NP_563115.1 CDS CPE2199 NC_003366.1 2519162 2519317 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(2519162..2519317) Clostridium perfringens str. 13 990523 NP_563116.1 CDS CPE2200 NC_003366.1 2519346 2520398 R similar to pir:D71154 hypothetical protein PH0435 from Pyrococcus horikoshii (340 aa); 49.4% identity in 330 aa overlap; Sua5/YciO/YrdC/YwlC family protein complement(2519346..2520398) Clostridium perfringens str. 13 990524 NP_563117.1 CDS CPE2201 NC_003366.1 2520421 2521011 R no significant homology N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein complement(2520421..2521011) Clostridium perfringens str. 13 990525 NP_563118.1 CDS prfA NC_003366.1 2521090 2522172 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(2521090..2522172) Clostridium perfringens str. 13 990526 NP_563119.1 CDS CPE2203 NC_003366.1 2522229 2523938 R N-terminal region is similar to pir:A72239 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (296 aa); 39.9% identity in 293 aa overlap. ATC start. 4 transmembrane regions were found by PSORT.; hypothetical protein complement(2522229..2523938) Clostridium perfringens str. 13 990527 NP_563120.1 CDS tdk NC_003366.1 2524022 2524621 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(2524022..2524621) Clostridium perfringens str. 13 990528 NP_563121.1 CDS rpmE NC_003366.1 2524777 2524983 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 2524777..2524983 Clostridium perfringens str. 13 990529 NP_563122.1 CDS CPE2206 NC_003366.1 2525092 2526216 D similar to sp:YPFP_BACSU HYPOTHETICAL 43.6 KDA PROTEIN IN CPSD-METB INTERGENIC REGION from Bacillus subtilis (382 aa); 29.1% identity in 333 aa overlap; monogalactosyldiacylglycerol synthase 2525092..2526216 Clostridium perfringens str. 13 990530 NP_563123.1 CDS rho NC_003366.1 2526259 2527698 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(2526259..2527698) Clostridium perfringens str. 13 990531 NP_563124.1 CDS pyrG NC_003366.1 2527964 2529571 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(2527964..2529571) Clostridium perfringens str. 13 990532 NP_563125.1 CDS CPE2209 NC_003366.1 2529911 2530330 R similar to pir:C70059 hypothetical protein ywiB from Bacillus subtilis (142 aa); 31.9% identity in 113 aa overlap; hypothetical protein complement(2529911..2530330) Clostridium perfringens str. 13 990533 NP_563126.1 CDS CPE2210 NC_003366.1 2530353 2531333 R similar to pir:G81259 hypothetical protein Cj1633 from Campylobacter jejuni (strain NCTC 11168) (327 aa); 41.5% identity in 299 aa overlap; hypothetical protein complement(2530353..2531333) Clostridium perfringens str. 13 990534 NP_563127.1 CDS spoIIR NC_003366.1 2531379 2532008 R similar to sp:SP2R_BACSU STAGE II SPORULATION PROTEIN R from Bacillus subtilis (224 aa); 37.7% identity in 167 aa overlap. N-terminal signal sequence was found by PSORT; stage II sporulation protein R complement(2531379..2532008) Clostridium perfringens str. 13 990535 NP_563128.1 CDS ipk NC_003366.1 2532078 2532944 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(2532078..2532944) Clostridium perfringens str. 13 990536 NP_563129.1 CDS cphA NC_003366.1 2533080 2535704 R catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase complement(2533080..2535704) Clostridium perfringens str. 13 990537 NP_563130.1 CDS cphB NC_003366.1 2535691 2536518 R similar to sp:CPHB_SYNY8 CYANOPHYCINASE (EC 3.-.-.-) from Synechocystis PCC6308 (272 aa); 40.2% identity in 264 aa overlap; cyanophycinase complement(2535691..2536518) Clostridium perfringens str. 13 990538 NP_563131.1 CDS CPE2215 NC_003366.1 2536618 2538180 R no significant homology; lysM domain-containing protein complement(2536618..2538180) Clostridium perfringens str. 13 990539 NP_563132.1 CDS CPE2216 NC_003366.1 2538540 2538776 R similar to sp:VEG_BACSU VEG PROTEIN from Bacillus subtilis (86 aa); 45.2% identity in 73 aa overlap; hypothetical protein complement(2538540..2538776) Clostridium perfringens str. 13 990540 NP_563133.1 CDS CPE2217 NC_003366.1 2538939 2539826 R similar to sp:YABG_BACSU HYPOTHETICAL 33.3 KDA PROTEIN IN KSGA-VEG INTERGENIC REGION from Bacillus subtilis (290 aa); 41.3% identity in 288 aa overlap; peptidase complement(2538939..2539826) Clostridium perfringens str. 13 990541 NP_563134.1 CDS cotS NC_003366.1 2540029 2541033 R similar to pir:F69987 spore coat protein homolog ytaA from Bacillus subtilis (357 aa); 24.3% identity in 284 aa overlap; spore coat protein CotS complement(2540029..2541033) Clostridium perfringens str. 13 990542 NP_563135.1 CDS CPE2219 NC_003366.1 2541142 2542269 D similar to gp:AF189151_7 WbdB from Klebsiella pneumoniae (381 aa); 30.8% identity in 357 aa overlap; mannosyltransferase 2541142..2542269 Clostridium perfringens str. 13 990543 NP_563136.1 CDS cotS NC_003366.1 2542452 2543480 R similar to pir:F69987 spore coat protein homolog ytaA from Bacillus subtilis (357 aa); 24.2% identity in 318 aa overlap; spore coat protein complement(2542452..2543480) Clostridium perfringens str. 13 990544 NP_563137.1 CDS CPE2221 NC_003366.1 2543496 2544179 R no significant homology; hypothetical protein complement(2543496..2544179) Clostridium perfringens str. 13 990545 NP_563138.1 CDS cotS NC_003366.1 2544187 2545194 R similar to pir:F69987 spore coat protein homolog ytaA from Bacillus subtilis (357 aa); 21.7% identity in 281 aa overlap; spore coat protein complement(2544187..2545194) Clostridium perfringens str. 13 990546 NP_563139.1 CDS CPE2223 NC_003366.1 2545323 2546468 D similar to gp:AF189151_7 WbdB from Klebsiella pneumoniae (381 aa); 35.3% identity in 266 aa overlap; mannosyltransferase 2545323..2546468 Clostridium perfringens str. 13 990547 NP_563140.1 CDS CPE2224 NC_003366.1 2546702 2547232 R similar to N-terminal of pir:C71336 hypothetical protein TP034 from Treponema pallidum (469 aa); 25.5% identity in 153 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein complement(2546702..2547232) Clostridium perfringens str. 13 990548 NP_563141.1 CDS CPE2225 NC_003366.1 2547425 2547796 R partially similar to pir:C71252 hypothetical protein TP1032 from syphilis spirochete (144 aa); 31.3% identity in 64 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2547425..2547796) Clostridium perfringens str. 13 990549 NP_563142.1 CDS CPE2226 NC_003366.1 2547937 2548380 D similar to sp:TA15_TREPA 15 KDA LIPOPROTEIN PRECURSOR (MAJOR MEMBRANE IMMUNOGEN) from Treponema pallidum (141 aa); 33.1% identity in 145 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2547937..2548380 Clostridium perfringens str. 13 990550 NP_563143.1 CDS apbA NC_003366.1 2548415 2549443 D similar to sp:APBE_TREPA THIAMINE BIOSYNTHESIS LIPOPROTEIN APBE PRECURSOR from Treponema pallidum (362 aa); 32.8% identity in 332 aa overlap; thiamin biosynthesis lipoprotein 2548415..2549443 Clostridium perfringens str. 13 990551 NP_563144.1 CDS eutH NC_003366.1 2549567 2550691 R similar to sp:YXER_BACSU HYPOTHETICAL 38.4 KDA PROTEIN IN IDH-DEOR INTERGENIC REGION from Bacillus subtilis (370 aa); 32.1% identity in 330 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; ethanolamine transporter complement(2549567..2550691) Clostridium perfringens str. 13 990552 NP_563145.1 CDS CPE2229 NC_003366.1 2550854 2551183 R similar to gpu:AP001510_84 PTS system, cellobiose-specific enzyme II, B component (EIIA-cell) from Bacillus halodurans (98 aa); 49% identity in 96 aa overlap. N-terminal signal sequence was found by PSORT; cellobiose-specific enzyme IIB component; PTS system protein complement(2550854..2551183) Clostridium perfringens str. 13 990553 NP_563146.1 CDS CPE2230 NC_003366.1 2551428 2552807 R similar to pir:A69643 serine proteinase Do, heat-shock protein htrA from Bacillus subtilis (449 aa); 45.2% identity in 321 aa overlap. 1 transmembrane region was found by PSORT; heat-shock protein HtrA; serine protease complement(2551428..2552807) Clostridium perfringens str. 13 990554 NP_563147.1 CDS CPE2231 NC_003366.1 2552924 2553943 R similar to pir:D69747 hypothetical protein ybdG from Bacillus subtilis (296 aa); 23.3% identity in 288 aa overlap. 1 transmembrane region was found by PSORT; alpha/beta fold family hydrolase complement(2552924..2553943) Clostridium perfringens str. 13 990555 NP_563148.1 CDS CPE2232 NC_003366.1 2553958 2554977 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(2553958..2554977) Clostridium perfringens str. 13 990556 NP_563149.1 CDS CPE2233 NC_003366.1 2555119 2555751 D no significant homology; hypothetical protein 2555119..2555751 Clostridium perfringens str. 13 990557 NP_563150.1 CDS CPE2234 NC_003366.1 2555760 2556320 D partially similar to sp:TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR (EC 3.1.2.-) (PROTEASE I) (LYSOPHOSPHOLIPASE L1) (EC 3.1.1.5) (LECITHINASE B) from Escherichia col (208 aa); 26.3% identity in 99 aa overlap; acyl-CoA thioesterase 2555760..2556320 Clostridium perfringens str. 13 990558 NP_563151.1 CDS CPE2235 NC_003366.1 2556457 2557419 R similar to pir:C75218 probable monooxygenase PAB0184 from Pyrococcus abyssi (strain Orsay) (407 aa); 36.4% identity in 313 aa overlap. N-terminal signal sequence was found by PSORT; oxidoreductase, pyridine nucleotide-disulfide family complement(2556457..2557419) Clostridium perfringens str. 13 990559 NP_563152.1 CDS CPE2236 NC_003366.1 2557451 2558023 R similar to pir:E81297 hypothetical protein Cj1505c from Campylobacter jejuni (strain NCTC 11168) (190 aa); 29.8% identity in 188 aa overlap; hypothetical protein complement(2557451..2558023) Clostridium perfringens str. 13 990560 NP_563153.1 CDS CPE2237 NC_003366.1 2558205 2560094 D similar to pir:D69815 conserved hypothetical protein yfnI from Bacillus subtilis (653 aa); 32.8% identity in 567 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 2558205..2560094 Clostridium perfringens str. 13 990561 NP_563154.1 CDS CPE2238 NC_003366.1 2560233 2561756 R no significant homology N-terminal signal sequence was found by PSORT; lipoprotein complement(2560233..2561756) Clostridium perfringens str. 13 990562 NP_563155.1 CDS CPE2239 NC_003366.1 2561773 2563188 R similar to pir:H69762 two-component sensor histidine kinase homolog yclK from Bacillus subtilis (473 aa); 30.3% identity in 435 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; two-component sensor histidine kinase complement(2561773..2563188) Clostridium perfringens str. 13 990563 NP_563156.1 CDS CPE2240 NC_003366.1 2563369 2563836 R similar to prf:2222216A drrA gene from Thermotoga maritima (239 aa); 45.5% identity in 178 aa overlap; two-component response regulator complement(2563369..2563836) Clostridium perfringens str. 13 990564 NP_563157.1 CDS CPE2241 NC_003366.1 2563901 2564053 R no significant homology; hypothetical protein complement(2563901..2564053) Clostridium perfringens str. 13 990565 NP_563158.1 CDS CPE2242 NC_003366.1 2569898 2570698 R similar to gpu:AP001511_262 BH1373 gene product from Bacillus halodurans (270 aa); 44.5% identity in 256 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein complement(2569898..2570698) Clostridium perfringens str. 13 990571 NP_563159.1 CDS smtA NC_003366.1 2570886 2571689 R similar to prf:2202211A Met(S-adenosyl)-dependent methyltransferase from Escherichia coli (261 aa); 25.3% identity in 233 aa overlap. 1 transmembrane region was found by PSORT; S-adenosylmethionine-dependent methltransferase complement(2570886..2571689) Clostridium perfringens str. 13 990572 NP_563160.1 CDS CPE2244 NC_003366.1 2571905 2572660 D similar to sp:LSPA_STACA LIPOPROTEIN SIGNAL PEPTIDASE (EC 3.4.23.36) (PROLIPOPROTEIN SIGNAL PEPTIDASE) (SIGNAL PEPTIDASE II) (SPASE II) from Staphylococcus carnosus (159 aa); 23.4% identity in 145 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 2571905..2572660 Clostridium perfringens str. 13 990573 NP_563161.1 CDS CPE2245 NC_003366.1 2572779 2573081 D no significant homology; hypothetical protein 2572779..2573081 Clostridium perfringens str. 13 990574 NP_563162.1 CDS CPE2246 NC_003366.1 2573156 2573617 R partially similar to pir:G71006 probable thiamin-binding periplasmic protein precursor from Pyrococcus horikoshii (347 aa); 30.1% identity in 103 aa overlap; hypothetical protein complement(2573156..2573617) Clostridium perfringens str. 13 990575 NP_563163.1 CDS CPE2247 NC_003366.1 2573650 2574219 R similar to gp:AP001508_236 iron (III) transport system (iron (III)-binding protein) from Bacillus halodurans (372 aa); 24.4% identity in 164 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2573650..2574219) Clostridium perfringens str. 13 990576 NP_563164.1 CDS CPE2248 NC_003366.1 2579928 2580497 R similar to pir:B70156 probable chromate transport protein from Borrelia burgdorferi (177 aa); 34.8% identity in 178 aa overlap. 5 transmembrane regions were found by PSORT.; chromate transporter complement(2579928..2580497) Clostridium perfringens str. 13 990583 NP_563165.1 CDS CPE2249 NC_003366.1 2580484 2581035 R partially similar to pir:G71379 probable chromate transport protein from Treponema pallidum (456 aa); 35.8% identity in 173 aa overlap. 4 transmembrane regions were found by PSORT.; chromate transporter complement(2580484..2581035) Clostridium perfringens str. 13 990584 NP_563166.1 CDS CPE2250 NC_003366.1 2581458 2582162 D no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2581458..2582162 Clostridium perfringens str. 13 990585 NP_563167.1 CDS pepD NC_003366.1 2582494 2583945 R similar to pir:JU0300 X-His dipeptidase (EC 3.4.13.3) from Escherichia coli (485 aa); 38.4% identity in 482 aa overlap. 1 transmembrane region was found by PSORT; aminoacyl-histidine dipeptidase complement(2582494..2583945) Clostridium perfringens str. 13 990586 NP_563168.1 CDS CPE2252 NC_003366.1 2586002 2586472 R similar to sp:YSNB_BACSU HYPOTHETICAL 19.2 KDA PROTEIN IN RPH-ILVB INTERGENIC REGION from Bacillus subtilis (171 aa); 34.4% identity in 154 aa overlap; Ser/Thr protein phosphatase complement(2586002..2586472) Clostridium perfringens str. 13 990605 NP_563169.1 CDS CPE2253 NC_003366.1 2586484 2587098 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(2586484..2587098) Clostridium perfringens str. 13 990606 NP_563170.1 CDS rph NC_003366.1 2587100 2587846 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(2587100..2587846) Clostridium perfringens str. 13 990607 NP_563171.1 CDS CPE2255 NC_003366.1 2588068 2589771 D no significant homology; hypothetical protein 2588068..2589771 Clostridium perfringens str. 13 990608 NP_563172.1 CDS CPE2256 NC_003366.1 2589975 2591495 R partially similar to sp:OPPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN OPPA PRECURSOR from Bacillus subtilis (545 aa); 29.6% identity in 257 aa overlap. N-terminal signal sequence was found by PSORT; oligopeptide-binding protein complement(2589975..2591495) Clostridium perfringens str. 13 990609 NP_563173.1 CDS CPE2257 NC_003366.1 2593111 2593575 R no significant homology; hypothetical protein complement(2593111..2593575) Clostridium perfringens str. 13 990610 NP_563174.1 CDS CPE2258 NC_003366.1 2593699 2594022 D no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2593699..2594022 Clostridium perfringens str. 13 990611 NP_563175.1 CDS ligA NC_003366.1 2594060 2596057 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(2594060..2596057) Clostridium perfringens str. 13 990612 NP_563176.1 CDS CPE2260 NC_003366.1 2596086 2598341 R similar to gpu:AP001509_86 ATP-dependent DNA helicase from Bacillus halodurans (747 aa); 50.1% identity in 742 aa overlap; ATP-dependent DNA helicase PcrA complement(2596086..2598341) Clostridium perfringens str. 13 990613 NP_563177.1 CDS CPE2261 NC_003366.1 2598553 2599341 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2598553..2599341) Clostridium perfringens str. 13 990614 NP_563178.1 CDS CPE2262 NC_003366.1 2599358 2599906 R partially similar to gpu:AP001514_135 spore coat-associated protein from Bacillus halodurans (210 aa); 27.2% identity in 92 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2599358..2599906) Clostridium perfringens str. 13 990615 NP_563179.1 CDS CPE2263 NC_003366.1 2599908 2600579 R no significant homology N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein complement(2599908..2600579) Clostridium perfringens str. 13 990616 NP_563180.1 CDS CPE2264 NC_003366.1 2601132 2601851 R similar to gpu:AP001518_104 16S pseudouridylate synthase from Bacillus halodurans (238 aa); 49.1% identity in 214 aa overlap; 16S pseudouridylate synthase complement(2601132..2601851) Clostridium perfringens str. 13 990617 NP_563181.1 CDS CPE2265 NC_003366.1 2602225 2604285 R similar to sp:COLA_CLOPE MICROBIAL COLLAGENASE PRECURSOR (EC 3.4.24.3) (120 KDA COLLAGENASE) from Clostridium perfringens (1104 aa); 19.5% identity in 416 aa overlap; triple tyrosine motif-containing protein complement(2602225..2604285) Clostridium perfringens str. 13 990618 NP_563182.1 CDS CPE2266 NC_003366.1 2604658 2605107 R similar to gpu:AP001511_263 BH1374 gene product from Bacillus halodurans (157 aa); 41.7% identity in 132 aa overlap; hypothetical protein complement(2604658..2605107) Clostridium perfringens str. 13 990619 NP_563183.1 CDS pgi NC_003366.1 2605305 2606657 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(2605305..2606657) Clostridium perfringens str. 13 990620 NP_563184.1 CDS CPE2268 NC_003366.1 2606687 2606896 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(2606687..2606896) Clostridium perfringens str. 13 990621 NP_563185.1 CDS appF NC_003366.1 2607098 2608066 R similar to sp:APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPF from Bacillus subtilis (329 aa); 59.9% identity in 317 aa overlap; ATP-binding protein; oligopeptide ABC transporter complement(2607098..2608066) Clostridium perfringens str. 13 990622 NP_563186.1 CDS appD NC_003366.1 2608067 2609044 R similar to gpu:AP001519_161 oligopeptide ABC transporter (ATP-binding protein) from Bacillus halodurans (329 aa); 56% identity in 323 aa overlap. 1 transmembrane region was found by PSORT; ATP-binding protein; oligopeptide ABC transporter complement(2608067..2609044) Clostridium perfringens str. 13 990623 NP_563187.1 CDS appC NC_003366.1 2609058 2609972 R similar to gp:AF042861_3 OppC from Treponema denticola (338 aa); 42.7% identity in 246 aa overlap. 6 transmembrane regions were found by PSORT.; permease; oligopeptide ABC transporter complement(2609058..2609972) Clostridium perfringens str. 13 990624 NP_563188.1 CDS appB NC_003366.1 2609987 2610952 R similar to pir:B75381 peptide ABC transporter, permease from Deinococcus radiodurans (strain R1) (333 aa); 41% identity in 322 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permease; oligopeptide ABC transporter complement(2609987..2610952) Clostridium perfringens str. 13 990625 NP_563189.1 CDS appA NC_003366.1 2611027 2612766 R similar to sp:APPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN APPA PRECURSOR from Bacillus subtilis (543 aa); 33.6% identity in 506 aa overlap. N-terminal signal sequence was found by PSORT; binding protein; oligopeptide ABC transporter complement(2611027..2612766) Clostridium perfringens str. 13 990626 NP_563190.1 CDS narK NC_003366.1 2613396 2614688 D similar to gp:PSNARXL_3 nitrate extrusion protein from Pseudomonas aeruginosa (431 aa); 27.3% identity in 315 aa overlap. 11 transmembrane regions were found by PSORT.; nitrate extrusion protein 2613396..2614688 Clostridium perfringens str. 13 990627 NP_563191.1 CDS guaA NC_003366.1 2615047 2616576 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(2615047..2616576) Clostridium perfringens str. 13 990628 NP_563192.1 CDS CPE2276 NC_003366.1 2616682 2618136 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(2616682..2618136) Clostridium perfringens str. 13 990629 NP_563193.1 CDS CPE2277 NC_003366.1 2618846 2621467 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2618846..2621467) Clostridium perfringens str. 13 990630 NP_563194.1 CDS CPE2278 NC_003366.1 2621491 2622051 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2621491..2622051) Clostridium perfringens str. 13 990631 NP_563195.1 CDS CPE2279 NC_003366.1 2622077 2624185 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2622077..2624185) Clostridium perfringens str. 13 990632 NP_563196.1 CDS CPE2280 NC_003366.1 2624190 2625191 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2624190..2625191) Clostridium perfringens str. 13 990633 NP_563197.1 CDS CPE2281 NC_003366.1 2625212 2626429 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2625212..2626429) Clostridium perfringens str. 13 990634 NP_563198.1 CDS CPE2282 NC_003366.1 2626419 2626985 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(2626419..2626985) Clostridium perfringens str. 13 990635 NP_563199.1 CDS CPE2283 NC_003366.1 2627000 2628154 R similar to pir:C75477 probable fimbrial assembly protein PilM from Deinococcus radiodurans (strain R1) (391 aa); 18.3% identity in 334 aa overlap; type IV pilus assembly protein PilM complement(2627000..2628154) Clostridium perfringens str. 13 990636 NP_563200.1 CDS CPE2284 NC_003366.1 2628270 2628818 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2628270..2628818) Clostridium perfringens str. 13 990637 NP_563201.1 CDS CPE2285 NC_003366.1 2628890 2630095 R similar to pir:A75344 pilin biogenesis protein from Deinococcus radiodurans (strain R1) (406 aa); 32.3% identity in 400 aa overlap. 3 transmembrane regions were found by PSORT.; type II secretion system protein F complement(2628890..2630095) Clostridium perfringens str. 13 990638 NP_563202.1 CDS CPE2286 NC_003366.1 2630122 2631813 R similar to gpu:AE004128_11 MSHA biogenesis protein MshE from Vibrio cholerae (575 aa); 41% identity in 558 aa overlap; secretion system protein E complement(2630122..2631813) Clostridium perfringens str. 13 990639 NP_563203.1 CDS CPE2287 NC_003366.1 2631883 2632626 R partially similar to pir:A75321 prepilin peptidase, type IV from Deinococcus radiodurans (strain R1) (388 aa); 38.8% identity in 201 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; prepilin peptidase complement(2631883..2632626) Clostridium perfringens str. 13 990640 NP_563204.1 CDS CPE2288 NC_003366.1 2632902 2633324 R similar to sp:PPDA_CLOPE PREPILIN PEPTIDASE DEPENDENT PROTEIN A PRECURSOR from Clostridium perfringens (140 aa); 78.6% identity in 140 aa overlap. 1 transmembrane region was found by PSORT; prepilin peptidase dependent protein A complement(2632902..2633324) Clostridium perfringens str. 13 990641 NP_563205.1 CDS groEL NC_003366.1 2633990 2635609 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL complement(2633990..2635609) Clostridium perfringens str. 13 990642 NP_563206.1 CDS groES NC_003366.1 2635664 2635948 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(2635664..2635948) Clostridium perfringens str. 13 990643 NP_563207.1 CDS CPE2291 NC_003366.1 2636319 2636969 D no significant homology N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 2636319..2636969 Clostridium perfringens str. 13 990644 NP_563208.1 CDS CPE2292 NC_003366.1 2637112 2637423 D similar to pir:B69836 hypothetical protein yisB from Bacillus subtilis (100 aa); 52.2% identity in 92 aa overlap; hypothetical protein 2637112..2637423 Clostridium perfringens str. 13 990645 NP_563209.1 CDS CPE2293 NC_003366.1 2637545 2638483 R similar to pir:E69045 8-oxoguanine DNA glycosylase from Methanobacterium thermoautotrophicum (strain Delta H) (312 aa); 34.7% identity in 245 aa overlap; 8-oxoguanine DNA glycosylase complement(2637545..2638483) Clostridium perfringens str. 13 990646 NP_563210.1 CDS CPE2294 NC_003366.1 2638493 2638897 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(2638493..2638897) Clostridium perfringens str. 13 990647 NP_563211.1 CDS lepW NC_003366.1 2639141 2639641 R similar to gp:CPSPC21_1 spc21 gene product from Clostridium perfringens (82 aa); 98.8% identity in 82 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; signal peptidase type I complement(2639141..2639641) Clostridium perfringens str. 13 990648 NP_563212.1 CDS CPE2296 NC_003366.1 2639783 2641483 R similar to sp:YWJA_BACSU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN IN ACDA 5'REGION from Bacillus subtilis (575 aa); 46.1% identity in 564 aa overlap. 4 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter complement(2639783..2641483) Clostridium perfringens str. 13 990649 NP_563213.1 CDS CPE2297 NC_003366.1 2641742 2642590 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(2641742..2642590) Clostridium perfringens str. 13 990650 NP_563214.1 CDS fixB NC_003366.1 2642704 2643711 R similar to sp:FIXB_CLOAB FIXB PROTEIN from Clostridium acetobutylicum (334 aa); 73.9% identity in 329 aa overlap; 3-hydroxybutyryl-CoA dehydrogenase complement(2642704..2643711) Clostridium perfringens str. 13 990651 NP_563215.1 CDS etfB NC_003366.1 2643733 2644512 R similar to sp:ETFB_CLOAB ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT (BETA-ETF) (ELECTRON TRANSFER FLAVOPROTEIN SMALL SUBUNIT) (ETFSS) from Clostridium acetobutylicum (252 aa); 71.4% identity in 245 aa overlap; electron transfer flavoprotein subunit beta complement(2643733..2644512) Clostridium perfringens str. 13 990652 NP_563216.1 CDS bcd NC_003366.1 2644531 2645670 R similar to sp:ACDS_CLOAB ACYL-COA DEHYDROGENASE, SHORT-CHAIN SPECIFIC (EC 1.3.99.2) (SCAD) (BUTYRYL-COA DEHYDROGENASE) from Clostridium acetobutylicum (379 aa); 72.6% identity in 379 aa overlap. 1 transmembrane region was found by PSORT; butyryl-CoA dehydrogenase complement(2644531..2645670) Clostridium perfringens str. 13 990653 NP_563217.1 CDS crt NC_003366.1 2645717 2646499 R catalyzes the formation of crotonoyl-CoA from (3R)-3-hydroxybutanoyl-CoA; 3-hydroxybutyryl-CoA dehydratase complement(2645717..2646499) Clostridium perfringens str. 13 990654 NP_563218.1 CDS CPE2302 NC_003366.1 2646762 2647400 R modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex complement(2646762..2647400) Clostridium perfringens str. 13 990655 NP_563219.1 CDS CPE2303 NC_003366.1 2647890 2650088 R similar to pir:D70041 heavy metal-transporting ATPase homolog yvgW from Bacillus subtilis (702 aa); 55.8% identity in 588 aa overlap. 6 transmembrane regions were found by PSORT.; heavy metal-transporting ATPase complement(2647890..2650088) Clostridium perfringens str. 13 990656 NP_563220.1 CDS CPE2304 NC_003366.1 2650104 2650463 R similar to sp:CADF_STAAU CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN HOMOLOG from Staphylococcus aureus (121 aa); 45.1% identity in 113 aa overlap; ArsC family; transcriptional regulator complement(2650104..2650463) Clostridium perfringens str. 13 990657 NP_563221.1 CDS CPE2305 NC_003366.1 2650598 2651218 R similar to pir:C69405 hypothetical protein AF1244 from Archaeoglobus fulgidus (161 aa); 38.3% identity in 60 aa overlap; hypothetical protein complement(2650598..2651218) Clostridium perfringens str. 13 990658 NP_563222.1 CDS CPE2306 NC_003366.1 2651306 2651884 R no significant homology; hypothetical protein complement(2651306..2651884) Clostridium perfringens str. 13 990659 NP_563223.1 CDS CPE2307 NC_003366.1 2652430 2652840 R no significant homology; hypothetical protein complement(2652430..2652840) Clostridium perfringens str. 13 990660 NP_563224.1 CDS CPE2308 NC_003366.1 2653069 2654139 R similar to pir:B75596 mannose-1-phosphate guanylyltransferase from Deinococcus radiodurans (strain R1) (372 aa); 34.8% identity in 359 aa overlap; mannose-1-phosphate guanylyltransferase complement(2653069..2654139) Clostridium perfringens str. 13 990661 NP_563225.1 CDS CPE2309 NC_003366.1 2654377 2655756 R similar to gpu:AP001520_142 beta-glucosidase from Bacillus halodurans (466 aa); 57.5% identity in 457 aa overlap; beta-glucosidase complement(2654377..2655756) Clostridium perfringens str. 13 990662 NP_563226.1 CDS aldH NC_003366.1 2656453 2657829 R similar to gpu:AP001510_40 aldehyde dehydrogenase from Bacillus halodurans (452 aa); 47% identity in 455 aa overlap; aldehyde dehydrogenase complement(2656453..2657829) Clostridium perfringens str. 13 990663 NP_563227.1 CDS CPE2311 NC_003366.1 2657979 2658689 R similar to gpu:AP001510_192 BH1017 gene product from Bacillus halodurans (202 aa); 30% identity in 200 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2657979..2658689) Clostridium perfringens str. 13 990664 NP_563228.1 CDS CPE2312 NC_003366.1 2658798 2659739 D similar to sp:YQKD_BACSU HYPOTHETICAL 34.6 KDA PROTEIN IN GLNQ-ANSR INTERGENIC REGION from Bacillus subtilis (305 aa); 34.5% identity in 223 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 2658798..2659739 Clostridium perfringens str. 13 990665 NP_563229.1 CDS CPE2313 NC_003366.1 2659981 2660886 R similar to gpu:AE004294_7 pseudouridine synthase 1 protein from Vibrio cholerae (340 aa); 67.4% identity in 239 aa overlap; hypothetical protein complement(2659981..2660886) Clostridium perfringens str. 13 990666 NP_563230.1 CDS CPE2314 NC_003366.1 2660908 2661921 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(2660908..2661921) Clostridium perfringens str. 13 990667 NP_563231.1 CDS CPE2315 NC_003366.1 2661982 2662659 R similar to gpu:AP001514_133 BH2127 gene product from Bacillus halodurans (194 aa); 36.9% identity in 130 aa overlap. N-terminal signal sequence was found by PSORT; sortase complement(2661982..2662659) Clostridium perfringens str. 13 990668 NP_563232.1 CDS ispF NC_003366.1 2663009 2663479 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 2663009..2663479 Clostridium perfringens str. 13 990669 NP_563233.1 CDS CPE2317 NC_003366.1 2663655 2664968 R similar to gpu:AE004359_10 Na+/H+ antiporter, from Vibrio cholerae (447 aa); 36.5% identity in 414 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; Na+/H+ antiporter complement(2663655..2664968) Clostridium perfringens str. 13 990670 NP_563234.1 CDS CPE2318 NC_003366.1 2665305 2666147 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase complement(2665305..2666147) Clostridium perfringens str. 13 990671 NP_563235.1 CDS CPE2319 NC_003366.1 2666820 2667512 R no significant homology; hypothetical protein complement(2666820..2667512) Clostridium perfringens str. 13 990676 NP_563236.1 CDS CPE2320 NC_003366.1 2667702 2668106 D no significant homology; hypothetical protein 2667702..2668106 Clostridium perfringens str. 13 990677 NP_563237.1 CDS CPE2321 NC_003366.1 2668165 2669574 R similar to sp:YQEF_BACSU HYPOTHETICAL 27.6 KDA LIPOPROTEIN IN NUCB-AROD INTERGENIC REGION from Bacillus subtilis (243 aa); 32% identity in 181 aa overlap; hypothetical protein complement(2668165..2669574) Clostridium perfringens str. 13 990678 NP_563238.1 CDS thrS NC_003366.1 2670843 2672774 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2670843..2672774 Clostridium perfringens str. 13 990684 NP_563239.1 CDS CPE2323 NC_003366.1 2673241 2674935 R similar to pir:E71251 probable oligoendopeptidase F from Treponema pallidum (589 aa); 44.6% identity in 560 aa overlap; oligoendopeptidase complement(2673241..2674935) Clostridium perfringens str. 13 990685 NP_563240.1 CDS CPE2324 NC_003366.1 2675031 2675609 R similar to pir:C70449 conserved hypothetical protein aq_1731 from Aquifex aeolicus (186 aa); 37.6% identity in 178 aa overlap; 5-formyltetrahydrofolate cyclo-ligase complement(2675031..2675609) Clostridium perfringens str. 13 990686 NP_563241.1 CDS CPE2325 NC_003366.1 2675835 2676647 R partially similar to pir:G69742 hypothetical protein ybaJ from Bacillus subtilis (255 aa); 36.6% identity in 101 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein complement(2675835..2676647) Clostridium perfringens str. 13 990687 NP_563242.1 CDS CPE2326 NC_003366.1 2676861 2677031 R no significant homology; hypothetical protein complement(2676861..2677031) Clostridium perfringens str. 13 990688 NP_563243.1 CDS glmS NC_003366.1 2677051 2678883 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(2677051..2678883) Clostridium perfringens str. 13 990689 NP_563244.1 CDS CPE2328 NC_003366.1 2679676 2680200 D similar to pir:A75157 hypothetical protein PAB2074 from Pyrococcus abyssi (strain Orsay) (101 aa); 36.4% identity in 66 aa overlap; hypothetical protein 2679676..2680200 Clostridium perfringens str. 13 990690 NP_563245.1 CDS glmM NC_003366.1 2680350 2681696 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(2680350..2681696) Clostridium perfringens str. 13 990691 NP_563246.1 CDS CPE2330 NC_003366.1 2682169 2683461 D partially similar to gp:SCL2_1 hypothetical protein SCL2.01 from Streptomyces coelicolor A3(2) (328 aa); 24.4% identity in 197 aa overlap; hypothetical protein 2682169..2683461 Clostridium perfringens str. 13 990692 NP_563247.1 CDS CPE2331 NC_003366.1 2683722 2685125 R similar to gp:EFA012050_2 VicK protein from Enterococcus faecalis (611 aa); 40.4% identity in 225 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; two-component sensor histidine kinase complement(2683722..2685125) Clostridium perfringens str. 13 990693 NP_563248.1 CDS CPE2332 NC_003366.1 2685106 2685798 R similar to gp:SPAJ6394_1 response regulator from Streptococcus pneumoniae (235 aa); 41.5% identity in 224 aa overlap; two-component response regulator complement(2685106..2685798) Clostridium perfringens str. 13 990694 NP_563249.1 CDS CPE2333 NC_003366.1 2685968 2686285 R no significant homology; hypothetical protein complement(2685968..2686285) Clostridium perfringens str. 13 990695 NP_563250.1 CDS CPE2334 NC_003366.1 2686351 2686650 R similar to pir:B69794 hypothetical protein yerC from Bacillus subtilis (104 aa); 63% identity in 92 aa overlap; TrpR-like protein YerC/YecD complement(2686351..2686650) Clostridium perfringens str. 13 990696 NP_563251.1 CDS CPE2335 NC_003366.1 2686790 2687629 R similar to pir:C75527 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (255 aa); 30.5% identity in 233 aa overlap; hypothetical protein complement(2686790..2687629) Clostridium perfringens str. 13 990697 NP_563252.1 CDS gde NC_003366.1 2687746 2689764 R similar to pir:H75549 glycogen debranching enzyme-related protein from Deinococcus radiodurans (strain R1) (804 aa); 29.9% identity in 445 aa overlap; glycogen debranching protein complement(2687746..2689764) Clostridium perfringens str. 13 990698 NP_563253.1 CDS glgP NC_003366.1 2690107 2692470 R similar to pir:S77252 phosphorylase (EC 2.4.1.1) 2 from Synechocystis sp. (strain PCC 6803) (855 aa); 48.5% identity in 753 aa overlap; glycogen phosphorylase complement(2690107..2692470) Clostridium perfringens str. 13 990699 NP_563254.1 CDS malQ NC_003366.1 2692463 2693956 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(2692463..2693956) Clostridium perfringens str. 13 990700 NP_563255.1 CDS CPE2339 NC_003366.1 2693978 2696125 R similar to gp:AAC252161_6 alpha-glucosidase from Alicyclobacillus acidocaldarius (728 aa); 35.4% identity in 611 aa overlap; alpha-glucosidase complement(2693978..2696125) Clostridium perfringens str. 13 990701 NP_563256.1 CDS malR NC_003366.1 2696149 2697162 R similar to sp:MALR_CLOBU TRANSCRIPTIONAL REGULATORY PROTEIN MALR from Clostridium butyricum (335 aa); 61.9% identity in 333 aa overlap; LacI family; LacI family transcriptional regulator complement(2696149..2697162) Clostridium perfringens str. 13 990702 NP_563257.1 CDS CPE2341 NC_003366.1 2697457 2698350 R similar to gp:AAC252161_3 maltose transport membrane protein from Alicyclobacillus acidocaldarius (301 aa); 41.6% identity in 296 aa overlap. 6 transmembrane regions were found by PSORT.; permease; maltose ABC transporter complement(2697457..2698350) Clostridium perfringens str. 13 990703 NP_563258.1 CDS CPE2342 NC_003366.1 2698352 2699305 R similar to gp:AAC252161_2 maltose transport membrane protein from Alicyclobacillus acidocaldarius (321 aa); 39.4% identity in 307 aa overlap. 5 transmembrane regions were found by PSORT.; permease; maltose ABC transporter complement(2698352..2699305) Clostridium perfringens str. 13 990704 NP_563259.1 CDS CPE2343 NC_003366.1 2699392 2700618 R similar to gp:AAC252161_1 maltose binding protein from Alicyclobacillus acidocaldarius (427 aa); 41.7% identity in 405 aa overlap; maltose-binding protein; maltose ABC transporter complement(2699392..2700618) Clostridium perfringens str. 13 990705 NP_563260.1 CDS CPE2344 NC_003366.1 2701079 2702020 R similar to gp:AB035092_6 Orf6 from Clostridium perfringens (313 aa); 96.5% identity in 313 aa overlap; hypothetical protein complement(2701079..2702020) Clostridium perfringens str. 13 990706 NP_563261.1 CDS CPE2345 NC_003366.1 2702055 2703164 R similar to gp:AB035092_5 Orf5 from Clostridium perfringen (369 aa); 98.6% identity in 369 aa overlap; ATP-binding protein; maltose ABC transporter complement(2702055..2703164) Clostridium perfringens str. 13 990707 NP_563262.1 CDS hydA NC_003366.1 2703382 2705100 R similar to gp:AB016820_1 hydrogenase (EC 1.18.99.1) from Clostridium perfringens (572 aa); 100% identity in 572 aa overlap; iron hydrogenase complement(2703382..2705100) Clostridium perfringens str. 13 990708 NP_563263.1 CDS buk NC_003366.1 2705326 2706396 R catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase complement(2705326..2706396) Clostridium perfringens str. 13 990709 NP_563264.1 CDS ptb NC_003366.1 2706421 2707410 R catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate; phosphate butyryltransferase complement(2706421..2707410) Clostridium perfringens str. 13 990710 NP_563265.1 CDS CPE2349 NC_003366.1 2707512 2709113 R similar to gp:AB035092_1 Orf1 from Clostridium perfringens (533 aa); 94% identity in 533 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein complement(2707512..2709113) Clostridium perfringens str. 13 990711 NP_563266.1 CDS CPE2350 NC_003366.1 2709189 2710517 R similar to pir:A69745 hypothetical protein ybbR from Bacillus subtilis (483 aa); 22.8% identity in 403 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2709189..2710517) Clostridium perfringens str. 13 990712 NP_563267.1 CDS CPE2351 NC_003366.1 2710484 2711341 R similar to gpu:AP001507_265 BH0265 gene product from Bacillus halodurans (274 aa); 42.8% identity in 229 aa overlap. 4 transmembrane regions were found by PSORT.; hypothetical protein complement(2710484..2711341) Clostridium perfringens str. 13 990713 NP_563268.1 CDS CPE2352 NC_003366.1 2711502 2712464 D no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2711502..2712464 Clostridium perfringens str. 13 990714 NP_563269.1 CDS CPE2353 NC_003366.1 2712535 2713137 D similar to rf:2220325A MurNAc-Ala amidase from Bacillus cereus (259 aa); 44.4% identity in 126 aa overlap. N-terminal signal sequence was found by PSORT; spore cortex-lytic protein 2712535..2713137 Clostridium perfringens str. 13 990715 NP_563270.1 CDS trxR NC_003366.1 2713169 2714029 R similar to pir:A69444 thioredoxin reductase (NADPH) (EC 1.6.4.5) from Archaeoglobus fulgidus (300 aa); 40.7% identity in 280 aa overlap; thioredoxin reductase complement(2713169..2714029) Clostridium perfringens str. 13 990716 NP_563271.1 CDS CPE2355 NC_003366.1 2714056 2714370 R similar to sp:THIO_CYACA THIOREDOXIN. from Chloroplast Cyanidium caldarium (107 aa); 50% identity in 100 aa overlap; thioredoxin complement(2714056..2714370) Clostridium perfringens str. 13 990717 NP_563272.1 CDS CPE2356 NC_003366.1 2714487 2715656 R similar to gpu:AP001511_18 isoaspartyl dipeptidase from Bacillus halodurans (391 aa); 47.7% identity in 386 aa overlap; isoaspartyl dipeptidase complement(2714487..2715656) Clostridium perfringens str. 13 990718 NP_563273.1 CDS CPE2357 NC_003366.1 2715821 2717440 R similar to gpu:AP001517_195 PTS system, enzyme I from Bacillus halodurans (572 aa); 58.1% identity in 534 aa overlap; PTS system enzyme I; phosphoenolpyruvate-protein phosphotransferase complement(2715821..2717440) Clostridium perfringens str. 13 990719 NP_563274.1 CDS CPE2358 NC_003366.1 2717915 2719921 D similar to sp:YQIR_BACSU SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR IN MMGE-BFMBAA INTERGENIC REGION from Bacillus subtilis (692 aa); 38.9% identity in 524 aa overlap. 1 transmembrane region was found by PSORT; sigma-L-dependent transcriptional regulator 2717915..2719921 Clostridium perfringens str. 13 990720 NP_563275.1 CDS rpsD NC_003366.1 2720091 2720684 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(2720091..2720684) Clostridium perfringens str. 13 990721 NP_563276.1 CDS nrdF NC_003366.1 2721085 2722119 R B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(2721085..2722119) Clostridium perfringens str. 13 990722 NP_563277.1 CDS nrdA NC_003366.1 2722215 2724446 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(2722215..2724446) Clostridium perfringens str. 13 990723 NP_563278.1 CDS CPE2362 NC_003366.1 2724730 2725086 R similar to gpu:AP001518_316 arsenate reductase from Bacillus halodurans (119 aa); 60.2% identity in 118 aa overlap; ArsC family protein complement(2724730..2725086) Clostridium perfringens str. 13 990724 NP_563279.1 CDS CPE2363 NC_003366.1 2725258 2727084 R similar to gpu:AP001511_43 BH1154 gene product from Bacillus halodurans (750 aa); 43.2% identity in 292 aa overlap.Also similar to many two-component sensor histidine kinases. 4 transmembrane regions were found by PSORT.; two-component sensor histidine kinase complement(2725258..2727084) Clostridium perfringens str. 13 990725 NP_563280.1 CDS CPE2364 NC_003366.1 2727062 2727760 R similar to gpu:AP001511_42 two-component response regulator from Bacillus halodurans (232 aa); 62.6% identity in 227 aa overlap; DNA-binding response regulator complement(2727062..2727760) Clostridium perfringens str. 13 990726 NP_563281.1 CDS CPE2365 NC_003366.1 2728014 2728871 D similar to gpu:AP001519_119 BH3604 gene product from Bacillus halodurans (293 aa); 36.6% identity in 273 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 2728014..2728871 Clostridium perfringens str. 13 990727 NP_563282.1 CDS CPE2366 NC_003366.1 2728973 2729125 D no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2728973..2729125 Clostridium perfringens str. 13 990728 NP_563283.1 CDS CPE2367 NC_003366.1 2729132 2729803 R similar to gpu:AP001507_239 germination specific N-acetylmuramoyl-L-alanine amidase from Bacillus halodurans (238 aa); 40.6% identity in 197 aa overlap. N-terminal signal sequence was found by PSORT; N-acetylmuramoyl-L-alanine amidase complement(2729132..2729803) Clostridium perfringens str. 13 990729 NP_563284.1 CDS CPE2368 NC_003366.1 2729994 2731607 R similar to gpu:AP001511_296 BH1407 gene product from Bacillus halodurans (543 aa); 38.6% identity in 502 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein complement(2729994..2731607) Clostridium perfringens str. 13 990730 NP_563285.1 CDS rpsI NC_003366.1 2731995 2732387 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(2731995..2732387) Clostridium perfringens str. 13 990731 NP_563286.1 CDS rplM NC_003366.1 2732414 2732848 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(2732414..2732848) Clostridium perfringens str. 13 990732 NP_563287.1 CDS truA NC_003366.1 2732995 2733729 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(2732995..2733729) Clostridium perfringens str. 13 990733 NP_563288.1 CDS CPE2372 NC_003366.1 2733887 2734693 R similar to pir:T44414 hypothetical protein ybaF from Bacillus halodurans (265 aa); 40.7% identity in 248 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein complement(2733887..2734693) Clostridium perfringens str. 13 990734 NP_563289.1 CDS cbiO NC_003366.1 2734709 2735566 R with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(2734709..2735566) Clostridium perfringens str. 13 990735 NP_563290.1 CDS CPE2374 NC_003366.1 2735551 2736396 R with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(2735551..2736396) Clostridium perfringens str. 13 990736 NP_563291.1 CDS rplQ NC_003366.1 2736819 2737160 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(2736819..2737160) Clostridium perfringens str. 13 990737 NP_563292.1 CDS rpoA NC_003366.1 2737177 2738124 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(2737177..2738124) Clostridium perfringens str. 13 3245315 NP_563293.1 CDS rpsD NC_003366.1 2738209 2738829 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(2738209..2738829) Clostridium perfringens str. 13 990738 NP_563294.1 CDS rpsK NC_003366.1 2738853 2739248 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(2738853..2739248) Clostridium perfringens str. 13 990739 NP_563295.1 CDS rpsM NC_003366.1 2739265 2739630 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(2739265..2739630) Clostridium perfringens str. 13 990740 NP_563296.1 CDS rpmJ NC_003366.1 2739867 2739980 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(2739867..2739980) Clostridium perfringens str. 13 990741 NP_563297.1 CDS infA NC_003366.1 2739993 2740211 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2739993..2740211) Clostridium perfringens str. 13 990742 NP_563298.1 CDS CPE2382 NC_003366.1 2740219 2740527 R no significant homology; hypothetical protein complement(2740219..2740527) Clostridium perfringens str. 13 990743 NP_563299.1 CDS map NC_003366.1 2740586 2741335 R similar to pir:T44405 methionyl aminopeptidase (EC 3.4.11.18) map from Bacillus halodurans (248 aa); 55.7% identity in 246 aa overlap; methionine aminopeptidase complement(2740586..2741335) Clostridium perfringens str. 13 990744 NP_563300.1 CDS adk NC_003366.1 2741335 2741991 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(2741335..2741991) Clostridium perfringens str. 13 990745 NP_563301.1 CDS secY NC_003366.1 2742012 2743289 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(2742012..2743289) Clostridium perfringens str. 13 990746 NP_563302.1 CDS rplO NC_003366.1 2743292 2743732 R late assembly protein; 50S ribosomal protein L15 complement(2743292..2743732) Clostridium perfringens str. 13 990747 NP_563303.1 CDS rpmD NC_003366.1 2743766 2743939 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(2743766..2743939) Clostridium perfringens str. 13 990748 NP_563304.1 CDS rpsE NC_003366.1 2743951 2744448 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(2743951..2744448) Clostridium perfringens str. 13 990749 NP_563305.1 CDS rplR NC_003366.1 2744469 2744828 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(2744469..2744828) Clostridium perfringens str. 13 990750 NP_563306.1 CDS rplF NC_003366.1 2744859 2745398 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(2744859..2745398) Clostridium perfringens str. 13 990751 NP_563307.1 CDS rpsH NC_003366.1 2745495 2745893 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(2745495..2745893) Clostridium perfringens str. 13 990752 NP_563308.1 CDS rpsN NC_003366.1 2745927 2746112 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 complement(2745927..2746112) Clostridium perfringens str. 13 990753 NP_563309.1 CDS rplE NC_003366.1 2746129 2746668 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(2746129..2746668) Clostridium perfringens str. 13 990754 NP_563310.1 CDS rplX NC_003366.1 2746691 2747005 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(2746691..2747005) Clostridium perfringens str. 13 990755 NP_563311.1 CDS rplN NC_003366.1 2747029 2747397 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(2747029..2747397) Clostridium perfringens str. 13 990756 NP_563312.1 CDS rpsQ NC_003366.1 2747428 2747682 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(2747428..2747682) Clostridium perfringens str. 13 990757 NP_563313.1 CDS rpmC NC_003366.1 2747704 2747913 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(2747704..2747913) Clostridium perfringens str. 13 990758 NP_563314.1 CDS rplP NC_003366.1 2747913 2748347 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(2747913..2748347) Clostridium perfringens str. 13 990759 NP_563315.1 CDS rpsC NC_003366.1 2748378 2749046 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(2748378..2749046) Clostridium perfringens str. 13 990760 NP_563316.1 CDS rplV NC_003366.1 2749067 2749402 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(2749067..2749402) Clostridium perfringens str. 13 990761 NP_563317.1 CDS rpsS NC_003366.1 2749430 2749711 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(2749430..2749711) Clostridium perfringens str. 13 990762 NP_563318.1 CDS rplB NC_003366.1 2749782 2750615 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(2749782..2750615) Clostridium perfringens str. 13 990763 NP_563319.1 CDS rplW NC_003366.1 2750670 2750963 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(2750670..2750963) Clostridium perfringens str. 13 990764 NP_563320.1 CDS rplD NC_003366.1 2751051 2751578 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(2751051..2751578) Clostridium perfringens str. 13 990765 NP_563321.2 CDS rplC NC_003366.1 2751603 2752232 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(2751603..2752232) Clostridium perfringens str. 13 990766 NP_563322.1 CDS rpsJ NC_003366.1 2752315 2752623 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(2752315..2752623) Clostridium perfringens str. 13 990767 NP_563323.1 CDS tuf NC_003366.1 2753318 2754511 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(2753318..2754511) Clostridium perfringens str. 13 990768 NP_563324.1 CDS fus NC_003366.1 2754585 2756651 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(2754585..2756651) Clostridium perfringens str. 13 990769 NP_563325.1 CDS rpsG NC_003366.1 2756732 2757202 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(2756732..2757202) Clostridium perfringens str. 13 990770 NP_563326.1 CDS rpsL NC_003366.1 2757362 2757742 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(2757362..2757742) Clostridium perfringens str. 13 990771 NP_563327.1 CDS CPE2411 NC_003366.1 2757800 2758066 R similar to pir:G69751 ribosomal protein L7AE family homolog ybxF from Bacillus subtilis (82 aa); 47.8% identity in 69 aa overlap; ribosomal protein L7AE family protein complement(2757800..2758066) Clostridium perfringens str. 13 990772 NP_563328.1 CDS rpoC NC_003366.1 2758152 2761688 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(2758152..2761688) Clostridium perfringens str. 13 990773 NP_563329.1 CDS rpoB NC_003366.1 2761768 2765472 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(2761768..2765472) Clostridium perfringens str. 13 990774 NP_563330.1 CDS rplL NC_003366.1 2765777 2766142 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(2765777..2766142) Clostridium perfringens str. 13 990775 NP_563331.2 CDS rplJ NC_003366.1 2766197 2766697 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(2766197..2766697) Clostridium perfringens str. 13 990776 NP_563332.1 CDS rplA NC_003366.1 2766914 2767603 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(2766914..2767603) Clostridium perfringens str. 13 990777 NP_563333.1 CDS rplK NC_003366.1 2767661 2768086 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(2767661..2768086) Clostridium perfringens str. 13 990778 NP_563334.1 CDS nusG NC_003366.1 2768161 2768682 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(2768161..2768682) Clostridium perfringens str. 13 990779 NP_563335.1 CDS secE NC_003366.1 2768720 2768944 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(2768720..2768944) Clostridium perfringens str. 13 990780 NP_563336.1 CDS rpmG NC_003366.1 2768998 2769147 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 complement(2768998..2769147) Clostridium perfringens str. 13 990781 NP_563337.1 CDS tuf NC_003366.1 2769330 2770523 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(2769330..2770523) Clostridium perfringens str. 13 990782 NP_563338.1 CDS sigH NC_003366.1 2770748 2771395 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 complement(2770748..2771395) Clostridium perfringens str. 13 990784 NP_563339.1 CDS CPE2423 NC_003366.1 2771477 2771986 R similar to gpu:AP001507_114 BH0114 gene product from Bacillus halodurans (170 aa); 41.3% identity in 167 aa overlap; hypothetical protein complement(2771477..2771986) Clostridium perfringens str. 13 990785 NP_563340.1 CDS CPE2424 NC_003366.1 2772002 2772871 R similar to sp:YACO_BACSU HYPOTHETICAL TRNA/RRNA METHYLTRANSFERASE YACO (EC 2.1.1.-) from Bacillus subtilis (249 aa); 50.4% identity in 242 aa overlap; TrmH family RNA methyltransferase complement(2772002..2772871) Clostridium perfringens str. 13 990786 NP_563341.1 CDS thyX NC_003366.1 2772894 2773631 R flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase complement(2772894..2773631) Clostridium perfringens str. 13 990787 NP_563342.1 CDS CPE2426 NC_003366.1 2773647 2774057 R similar to gpu:AP001507_112 BH0112 gene product from Bacillus halodurans (139 aa); 50% identity in 114 aa overlap; hypothetical protein complement(2773647..2774057) Clostridium perfringens str. 13 990788 NP_563343.1 CDS cysS NC_003366.1 2774285 2775685 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(2774285..2775685) Clostridium perfringens str. 13 990789 NP_563344.1 CDS proS NC_003366.1 2775790 2777502 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(2775790..2777502) Clostridium perfringens str. 13 990790 NP_563345.1 CDS ispD NC_003366.1 2777857 2778534 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(2777857..2778534) Clostridium perfringens str. 13 990791 NP_563346.1 CDS CPE2430 NC_003366.1 2778548 2779654 R similar to gpu:AP001507_106 BH0106 gene product from Bacillus halodurans (362 aa); 47.7% identity in 367 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; PIN/TRAM domain-containing protein complement(2778548..2779654) Clostridium perfringens str. 13 990792 NP_563347.1 CDS CPE2431 NC_003366.1 2779966 2780367 D no significant homology; hypothetical protein 2779966..2780367 Clostridium perfringens str. 13 990793 NP_563348.1 CDS CPE2432 NC_003366.1 2780401 2781465 R non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA complement(2780401..2781465) Clostridium perfringens str. 13 990794 NP_563349.1 CDS radA NC_003366.1 2781485 2782846 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(2781485..2782846) Clostridium perfringens str. 13 990795 NP_563350.1 CDS nagB NC_003366.1 2783097 2783825 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(2783097..2783825) Clostridium perfringens str. 13 990796 NP_563351.1 CDS CPE2435 NC_003366.1 2783822 2784544 R similar to pir:D70044 transcription regulator GntR family homolog yvoA from Bacillus subtilis (243 aa); 37.3% identity in 225 aa overlap; GntR family; GntR family transcriptional regulator complement(2783822..2784544) Clostridium perfringens str. 13 990797 NP_563352.1 CDS CPE2436 NC_003366.1 2784744 2784908 D no significant homology; hypothetical protein 2784744..2784908 Clostridium perfringens str. 13 990798 NP_563353.1 CDS CPE2437 NC_003366.1 2785002 2785229 D similar to sp:YRUB_CLOPA HYPOTHETICAL GLUTAREDOXIN-LIKE 8.6 KDA PROTEIN IN RUBREDOXIN OPERON (ORF B) from Clostridium pasteurianum (75 aa); 58.7% identity in 75 aa overlap; glutaredoxin 2785002..2785229 Clostridium perfringens str. 13 990799 NP_563354.1 CDS gapN NC_003366.1 2785352 2786800 R similar to sp:GAPN_STRMU NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (EC 1.2.1.9) (NON-PHOSPHORYLATING GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE) (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE [NADP+]) (TRIOSEPHOSPHATE DEHYDROGENASE) from Streptococcus mutans (475 aa); 57.1% identity in 475 aa overlap; NADP-dependent glyceraldehyde-3-phosphate dehydrogenas complement(2785352..2786800) Clostridium perfringens str. 13 990800 NP_563355.1 CDS CPE2439 NC_003366.1 2786817 2787050 R similar to sp:YRUB_CLOPA HYPOTHETICAL GLUTAREDOXIN-LIKE 8.6 KDA PROTEIN IN RUBREDOXIN OPERON (ORF B) from Clostridium pasteurianum (75 aa); 41.3% identity in 75 aa overlap; glutaredoxin complement(2786817..2787050) Clostridium perfringens str. 13 990801 NP_563356.1 CDS CPE2440 NC_003366.1 2787053 2787991 R similar to sp:R34K_CLOPA 34.2 KDA PROTEIN IN RUBREDOXIN OPERON (EC 1.6.4.-) (ORF A) from Clostridium pasteurianum (308 aa); 51.3% identity in 304 aa overlap. N-terminal signal sequence was found by PSORT; thioredoxin-disulfide reductase complement(2787053..2787991) Clostridium perfringens str. 13 990802 NP_563357.1 CDS clpC NC_003366.1 2788268 2790712 R similar to sp:CLPC_BACSU NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC/MECB from Bacillus subtilis (810 aa); 53.1% identity in 813 aa overlap; negative regulator of genetic competence MecB/ClpC complement(2788268..2790712) Clostridium perfringens str. 13 990803 NP_563358.1 CDS CPE2442 NC_003366.1 2790737 2791750 R similar to sp:YACI_BACSU HYPOTHETICAL 41.1 KDA PROTEIN IN LYSS-MECB INTERGENIC REGION (ORFX) from Bacillus subtilis (363 aa); 33.8% identity in 328 aa overlap; ATP:guanido phosphotransferase complement(2790737..2791750) Clostridium perfringens str. 13 990804 NP_563359.1 CDS CPE2443 NC_003366.1 2791734 2792333 R similar to gp:LMU40604_2 Listeria monocytogenes ClpC ATPase (mec) gene, complete cds from Listeria monocytogenes (174 aa); 34% identity in 162 aa overlap; hypothetical protein complement(2791734..2792333) Clostridium perfringens str. 13 990805 NP_563360.1 CDS ctsR NC_003366.1 2792281 2792736 R similar to gp:AB031211_4 CtsR from Bacillus halodurans (156 aa); 38.3% identity in 149 aa overlap; transcriptional repressor complement(2792281..2792736) Clostridium perfringens str. 13 990806 NP_563361.1 CDS CPE2445 NC_003366.1 2792953 2793606 D similar to pir:A72406 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (208 aa); 41.9% identity in 179 aa overlap; hypothetical protein 2792953..2793606 Clostridium perfringens str. 13 990807 NP_563362.1 CDS CPE2446 NC_003366.1 2793657 2795318 R partially similar to sp:CPHA_ANAVA CYANOPHYCIN SYNTHETASE (EC 6.-.-.-) from Anabaena variabilis (901 aa); 34.6% identity in 338 aa overlap; hypothetical protein complement(2793657..2795318) Clostridium perfringens str. 13 990808 NP_563363.1 CDS fer NC_003366.1 2795456 2795626 R similar to sp:FER_CLOPE FERREDOXIN from Clostridium perfringens (55 aa); 100% identity in 55 aa overlap; ferredoxin complement(2795456..2795626) Clostridium perfringens str. 13 990809 NP_563364.1 CDS CPE2448 NC_003366.1 2795795 2796700 R similar to gpu:AP001507_45 signal peptidase-like protein from Bacillus halodurans (275 aa); 59.8% identity in 249 aa overlap; PSP1 domain-containing protein complement(2795795..2796700) Clostridium perfringens str. 13 990810 NP_563365.1 CDS holB NC_003366.1 2796703 2797626 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(2796703..2797626) Clostridium perfringens str. 13 990811 NP_563366.1 CDS CPE2450 NC_003366.1 2797648 2797977 R similar to gp:TT11467_4 hypothetical 12.0kD protein from Thermus thermophilu (109 aa); 42.2% identity in 109 aa overlap; hypothetical protein complement(2797648..2797977) Clostridium perfringens str. 13 990812 NP_563367.1 CDS CPE2451 NC_003366.1 2798134 2798289 R no significant homology N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein complement(2798134..2798289) Clostridium perfringens str. 13 990813 NP_563368.1 CDS gmk NC_003366.1 2798306 2798896 R similar to prf:2407216B ORF from Bacillus natto (182 aa); 30.4% identity in 158 aa overlap; guanylate kinase complement(2798306..2798896) Clostridium perfringens str. 13 990814 NP_563369.1 CDS CPE2453 NC_003366.1 2799143 2800573 R similar to sp:YAAO_BACSU HYPOTHETICAL 53.2 KDA PROTEIN IN XPAC-ABRB INTERGENIC REGION from Bacillus subtilis (480 aa); 33.3% identity in 451 aa overlap; Orn/Lys/Arg decarboxylase complement(2799143..2800573) Clostridium perfringens str. 13 990815 NP_563370.1 CDS csfB NC_003366.1 2800591 2800767 R similar to sp:CSFB_BACSU CSFB PROTEIN from Bacillus subtilis (64 aa); 43.2% identity in 44 aa overlap; csfB protein complement(2800591..2800767) Clostridium perfringens str. 13 990816 NP_563371.1 CDS CPE2455 NC_003366.1 2800923 2802092 D partially similar to pir:D64883 hypothetical protein b1337 from Escherichia coli (481 aa); 31.8% identity in 245 aa overlap; amidohydrolase 2800923..2802092 Clostridium perfringens str. 13 990817 NP_563372.1 CDS CPE2456 NC_003366.1 2802121 2802618 R no significant homology N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein complement(2802121..2802618) Clostridium perfringens str. 13 990818 NP_563373.1 CDS CPE2457 NC_003366.1 2802893 2803837 D similar to pir:A75272 probable transport protein from Deinococcus radiodurans (strain R1) (312 aa); 42.7% identity in 314 aa overlap. 2 transmembrane regions were found by PSORT.; transporter 2802893..2803837 Clostridium perfringens str. 13 990819 NP_563374.1 CDS CPE2458 NC_003366.1 2803902 2804810 D similar to sp:YKFA_BACSU HYPOTHETICAL 25.4 KDA PROTEIN IN DPPE-HMP INTERGENIC REGION from Bacillus subtilis (234 aa); 40.3% identity in 211 aa overlap; hypothetical protein 2803902..2804810 Clostridium perfringens str. 13 990820 NP_563375.1 CDS murD NC_003366.1 2812125 2813501 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(2812125..2813501) Clostridium perfringens str. 13 990829 NP_563376.1 CDS bioB NC_003366.1 2813812 2814855 D catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 2813812..2814855 Clostridium perfringens str. 13 990830 NP_563377.1 CDS CPE2461 NC_003366.1 2815098 2816339 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase complement(2815098..2816339) Clostridium perfringens str. 13 990831 NP_563378.1 CDS mccF NC_003366.1 2816430 2817299 R similar to pir:E71292 probable immunity protein (mccF) from Treponema pallidum (337 aa); 31.6% identity in 285 aa overlap; LD-carboxypeptidase complement(2816430..2817299) Clostridium perfringens str. 13 990832 NP_563379.1 CDS pepT NC_003366.1 2817473 2818591 R similar to gpu:AE004214_3 peptidase, M20A family from Vibrio cholerae (368 aa); 44.8% identity in 362 aa overlap; peptidase complement(2817473..2818591) Clostridium perfringens str. 13 990833 NP_563380.1 CDS glyS NC_003366.1 2818777 2820180 R Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase complement(2818777..2820180) Clostridium perfringens str. 13 990834 NP_563381.1 CDS lysS NC_003366.1 2820866 2822371 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(2820866..2822371) Clostridium perfringens str. 13 990836 NP_563382.1 CDS greA NC_003366.1 2822397 2822873 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(2822397..2822873) Clostridium perfringens str. 13 990837 NP_563383.1 CDS CPE2467 NC_003366.1 2823152 2824132 R similar to gpu:AP001507_97 transcriptional regulator involved in nitrogen regulation (NifR3/Smm1 family) from Bacillus halodurans (334 aa); 46.7% identity in 321 aa overlap; NifR3/Smm1 family; dihydrouridine synthase complement(2823152..2824132) Clostridium perfringens str. 13 990838 NP_563384.1 CDS CPE2468 NC_003366.1 2824139 2824918 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(2824139..2824918) Clostridium perfringens str. 13 990839 NP_563385.1 CDS CPE2469 NC_003366.1 2825121 2826791 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(2825121..2826791) Clostridium perfringens str. 13 990840 NP_563386.1 CDS ftsH NC_003366.1 2826993 2828798 R similar to pir:T31466 cell-division protein homolog ftsH from Heliobacillus mobilis (601 aa); 52% identity in 596 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; ATP-dependent metalloprotease FtsH complement(2826993..2828798) Clostridium perfringens str. 13 990841 NP_563387.1 CDS hprT NC_003366.1 2828873 2829424 R similar to sp:HPRT_BACSU HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE (EC 2.4.2.8) (HGPRT) (HGPRTASE) from Bacillus subtilis (180 aa); 53.7% identity in 177 aa overlap. 1 transmembrane region was found by PSORT; hypoxanthine phosphoribosyltransferase complement(2828873..2829424) Clostridium perfringens str. 13 990842 NP_563388.1 CDS CPE2472 NC_003366.1 2829427 2830836 R similar to pir:S66097 cell-cycle protein homolog yacA from Bacillus subtilis (486 aa); 30.4% identity in 441 aa overlap; tRNA(Ile)-lysidine synthetase complement(2829427..2830836) Clostridium perfringens str. 13 990843 NP_563389.1 CDS spoIIE NC_003366.1 2831053 2833443 R similar to gpu:AP001507_78 stage II sporulation protein E from Bacillus halodurans (830 aa); 23.9% identity in 762 aa overlap. 11 transmembrane regions were found by PSORT.; stage II sprulation protein E complement(2831053..2833443) Clostridium perfringens str. 13 990844 NP_563390.1 CDS CPE2474 NC_003366.1 2834751 2835155 R similar to sp:YABR_BACSU HYPOTHETICAL 14.2 KDA PROTEIN IN DIVIC-SPOIIE INTERGENIC REGION from Bacillus subtilis (128 aa); 45% identity in 131 aa overlap; hypothetical protein complement(2834751..2835155) Clostridium perfringens str. 13 990852 NP_563391.1 CDS CPE2475 NC_003366.1 2835215 2835607 R similar to gp:AF023181_4 DivIC homolog from Listeria monocytogenes (128 aa); 31.1% identity in 74 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein complement(2835215..2835607) Clostridium perfringens str. 13 990853 NP_563392.1 CDS CPE2476 NC_003366.1 2835631 2836005 R similar to sp:YABQ_BACSU HYPOTHETICAL 25.1 KDA PROTEIN IN MFD-DIVIC INTERGENIC REGION from Bacillus subtilis (211 aa); 30.6% identity in 121 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(2835631..2836005) Clostridium perfringens str. 13 990854 NP_563393.1 CDS CPE2477 NC_003366.1 2836015 2836314 R similar to gpu:AP001507_74 BH0074 gene product from Bacillus halodurans (103 aa); 43.8% identity in 64 aa overlap; sporulation protein YabP complement(2836015..2836314) Clostridium perfringens str. 13 990855 NP_563394.1 CDS CPE2478 NC_003366.1 2836445 2836705 R similar to gp:AF023181_3 unknown protein from Listeria monocytogenes (92 aa); 52.3% identity in 86 aa overlap; S4 domain-containing protein complement(2836445..2836705) Clostridium perfringens str. 13 990856 NP_563395.1 CDS dbh NC_003366.1 2836813 2837088 R similar to sp:DBH_CLOPA DNA-BINDING PROTEIN H from Clostridium pasteurianum (91 aa); 81.1% identity in 90 aa overlap; DNA-binding protein HU complement(2836813..2837088) Clostridium perfringens str. 13 990857 NP_563396.1 CDS CPE2480 NC_003366.1 2837305 2838756 R similar to sp:YABN_BACSU HYPOTHETICAL 56.1 KDA PROTEIN IN MFD-DIVIC INTERGENIC REGION from Bacillus subtilis (489 aa); 47.7% identity in 484 aa overlap; nucleotide pyrophosphohydrolase complement(2837305..2838756) Clostridium perfringens str. 13 990858 NP_563397.1 CDS spoVB NC_003366.1 2838786 2840318 R similar to sp:SP5B_BACSU STAGE V SPORULATION PROTEIN B from Bacillus subtilis (518 aa); 27.7% identity in 505 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; stage V sporulation protein B complement(2838786..2840318) Clostridium perfringens str. 13 990859 NP_563398.1 CDS CPE2482 NC_003366.1 2840498 2841046 R similar to gpu:AP001507_70 stage V sporulation protein T from Bacillus haloduran (179 aa); 63.7% identity in 182 aa overlap. 1 transmembrane region was found by PSORT; stage V sprulation protein T complement(2840498..2841046) Clostridium perfringens str. 13 990860 NP_563399.1 CDS prsA NC_003366.1 2841241 2842269 R cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidyl-prolyl isomerase complement(2841241..2842269) Clostridium perfringens str. 13 990861 NP_563400.1 CDS mfd NC_003366.1 2842370 2845858 R similar to sp:MFD_BACSU TRANSCRIPTION-REPAIR COUPLING FACTOR (TRCF) from Bacillus subtili (1177 aa); 48.4% identity in 1078 aa overlap; transcription-repair coupling factor complement(2842370..2845858) Clostridium perfringens str. 13 990862 NP_563401.1 CDS spoVC NC_003366.1 2845907 2846473 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(2845907..2846473) Clostridium perfringens str. 13 990863 NP_563402.1 CDS CPE2486 NC_003366.1 2846599 2847756 R similar to sp:HTRA_CHLTR PROBABLE SERINE PROTEASE DO-LIKE PRECURSOR (EC 3.4.21.-) (59 KDA IMMUNOGENIC PROTEIN) (SK59) from Chlamydia trachomatis (serotype D, strain UW3/Cx) (497 aa); 31.8% identity in 274 aa overlap. 1 transmembrane region was found by PSORT; proteinase Do; PDZ domain-containing protein complement(2846599..2847756) Clostridium perfringens str. 13 990864 NP_563403.1 CDS CPE2487 NC_003366.1 2847777 2849186 R similar to pir:H69762 two-component sensor histidine kinase homolog yclK from Bacillus subtilis (473 aa); 28.2% identity in 451 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; two-component sensor histidine kinase complement(2847777..2849186) Clostridium perfringens str. 13 990865 NP_563404.1 CDS CPE2488 NC_003366.1 2849186 2849872 R similar to gpu:AP001512_167 two-component response regulator from Bacillus halodurans (238 aa); 51.6% identity in 221 aa overlap; DNA-binding response regulator complement(2849186..2849872) Clostridium perfringens str. 13 990866 NP_563405.1 CDS prs NC_003366.1 2850143 2851102 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(2850143..2851102) Clostridium perfringens str. 13 990867 NP_563406.1 CDS glmU NC_003366.1 2851159 2852523 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(2851159..2852523) Clostridium perfringens str. 13 990868 NP_563407.1 CDS spoVG NC_003366.1 2852733 2853005 R stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG complement(2852733..2853005) Clostridium perfringens str. 13 990869 NP_563408.1 CDS purR NC_003366.1 2853116 2853919 R similar to gpu:AP001507_62 transcriptional repressor of the purine operon from Bacillus halodurans (282 aa); 42.6% identity in 258 aa overlap; pur operon repressor complement(2853116..2853919) Clostridium perfringens str. 13 990870 NP_563409.2 CDS murC NC_003366.1 2854253 2855653 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 2854253..2855653 Clostridium perfringens str. 13 990871 NP_563410.1 CDS CPE2494 NC_003366.1 2855996 2856904 D similar to gpu:AP001515_47 transcriptional regulator from Bacillus halodurans (337 aa); 33.9% identity in 304 aa overlap; LacI family; transcriptional regulator 2855996..2856904 Clostridium perfringens str. 13 990872 NP_563411.1 CDS punA NC_003366.1 2857020 2857838 D catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 2857020..2857838 Clostridium perfringens str. 13 990873 NP_563412.1 CDS CPE2496 NC_003366.1 2857918 2859144 D similar to pir:H82087 NupC family protein VC2352 from Vibrio cholerae (group O1 strain N16961) (418 aa); 43.4% identity in 401 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; nucleoside transporter 2857918..2859144 Clostridium perfringens str. 13 990874 NP_563413.1 CDS CPE2497 NC_003366.1 2859220 2860296 R similar to gpu:AP001518_10 prolidase (proline dipeptidase) from Bacillus halodurans (364 aa); 35.7% identity in 353 aa overlap; metallopeptidase, family M24 complement(2859220..2860296) Clostridium perfringens str. 13 990875 NP_563414.1 CDS CPE2498 NC_003366.1 2860464 2861162 D similar to pir:G72200 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (254 aa); 39% identity in 223 aa overlap; Ser/Thr protein phosphatase 2860464..2861162 Clostridium perfringens str. 13 990876 NP_563415.1 CDS CPE2499 NC_003366.1 2861299 2862513 R no significant homology; heme/steroid binding domain-containing protein complement(2861299..2862513) Clostridium perfringens str. 13 990877 NP_563416.1 CDS asnC NC_003366.1 2862925 2864322 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2862925..2864322 Clostridium perfringens str. 13 990878 NP_563417.1 CDS CPE2501 NC_003366.1 2864622 2866103 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(2864622..2866103) Clostridium perfringens str. 13 990879 NP_563418.1 CDS CPE2502 NC_003366.1 2866252 2866803 R no significant homology 2 transmembrane regions were found by PSORT.; hypothetical protein complement(2866252..2866803) Clostridium perfringens str. 13 990880 NP_563419.1 CDS nrdG NC_003366.1 2866933 2867442 R similar to pir:D69136 anaerobic ribonucleotide reductase activase (EC 1.97.1.-) from Methanobacterium thermoautotrophicum (strain Delta H) (237 aa); 40.1% identity in 157 aa overlap; anaerobic ribonucleoside-triphosphate reductase activating protein complement(2866933..2867442) Clostridium perfringens str. 13 990881 NP_563420.1 CDS CPE2504 NC_003366.1 2867551 2868159 D no significant homology; hypothetical protein 2867551..2868159 Clostridium perfringens str. 13 990882 NP_563421.1 CDS CPE2505 NC_003366.1 2868217 2869608 R similar to gpu:AE004241_1 conserved hypothetical protein from Vibrio cholerae (458 aa); 30.2% identity in 450 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; MATE efflux family protein complement(2868217..2869608) Clostridium perfringens str. 13 990883 NP_563422.1 CDS add NC_003366.1 2869991 2870989 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(2869991..2870989) Clostridium perfringens str. 13 990884 NP_563423.1 CDS nrdD NC_003366.1 2871382 2873499 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(2871382..2873499) Clostridium perfringens str. 13 990885 NP_563424.1 CDS CPE2508 NC_003366.1 2873759 2874826 D similar to gp:AF011544_5 YecC from Bacillus subtilis (331 aa); 32.4% identity in 281 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2873759..2874826 Clostridium perfringens str. 13 990886 NP_563425.1 CDS CPE2509 NC_003366.1 2875086 2875931 D similar to prf:2509371A grrY gene:SUBUNIT=selenoprotein B from Eubacterium acidaminophilum (280 aa); 27.1% identity in 277 aa overlap; degV family protein 2875086..2875931 Clostridium perfringens str. 13 990887 NP_563426.1 CDS CPE2510 NC_003366.1 2875934 2876374 D partially similar to pir:S78039 hypothetical protein c0114 from Sulfolobus solfataricus (135 aa); 40% identity in 65 aa overlap. 1 transmembrane region was found by PSORT; PadR family transcriptional regulator 2875934..2876374 Clostridium perfringens str. 13 990888 NP_563427.1 CDS fer NC_003366.1 2876426 2876614 R 3Fe-4S; similar to sp:FER_THELI FERREDOXIN from Thermococcus litoralis (59 aa); 59.7% identity in 62 aa overlap; ferredoxin complement(2876426..2876614) Clostridium perfringens str. 13 990889 NP_563428.1 CDS CPE2512 NC_003366.1 2876762 2877616 R similar to sp:MRP_CLOPE MRP PROTEIN HOMOLOG (FRAGMENT) from Clostridium perfringens (140 aa); 100% identity in 132 aa overlap; Mrp protein complement(2876762..2877616) Clostridium perfringens str. 13 990890 NP_563429.1 CDS CPE2513 NC_003366.1 2877637 2878476 R no significant homology; lipoprotein complement(2877637..2878476) Clostridium perfringens str. 13 990891 NP_563430.1 CDS CPE2514 NC_003366.1 2878466 2879236 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(2878466..2879236) Clostridium perfringens str. 13 990892 NP_563431.1 CDS CPE2515 NC_003366.1 2879339 2879911 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2879339..2879911) Clostridium perfringens str. 13 990893 NP_563432.1 CDS CPE2516 NC_003366.1 2880060 2881682 R no significant homology; hypothetical protein complement(2880060..2881682) Clostridium perfringens str. 13 990894 NP_563433.1 CDS ksgA NC_003366.1 2881782 2882639 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(2881782..2882639) Clostridium perfringens str. 13 990895 NP_563434.1 CDS CPE2518 NC_003366.1 2882651 2883199 R similar to gpu:AP001507_56 BH0056 gene product from Bacillus halodurans (185 aa); 46.9% identity in 177 aa overlap; primase-like protein complement(2882651..2883199) Clostridium perfringens str. 13 990896 NP_563435.1 CDS CPE2519 NC_003366.1 2883336 2884358 R similar to sp:YABE_BACSU HYPOTHETICAL 47.7 KDA PROTEIN IN METS-KSGA INTERGENIC REGION from Bacillus subtilis (437 aa); 36.9% identity in 301 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2883336..2884358) Clostridium perfringens str. 13 990897 NP_563436.1 CDS CPE2520 NC_003366.1 2884602 2885372 R similar to sp:YABD_BACSU HYPOTHETICAL 29.2 KDA PROTEIN IN METS-KSGA INTERGENIC REGION from Bacillus subtilis (255 aa); 46.4% identity in 252 aa overlap; TatD family hydrolase complement(2884602..2885372) Clostridium perfringens str. 13 990898 NP_563437.1 CDS CPE2521 NC_003366.1 2885391 2886890 R partially similar to pir:B69828 hypothetical protein yheB from Bacillus subtilis (377 aa); 32% identity in 169 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein complement(2885391..2886890) Clostridium perfringens str. 13 990899 NP_563438.1 CDS CPE2522 NC_003366.1 2886992 2887672 D similar to prf:2511460B dnrE gene from Pseudomonas stutzeri (231 aa); 24.5% identity in 220 aa overlap; Crp/Fnr family; cyclic nucleotide-binding protein 2886992..2887672 Clostridium perfringens str. 13 990900 NP_563439.1 CDS metS NC_003366.1 2887935 2889479 R similar to sp:SYM_ARCFU METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE-TRNA LIGASE) (METRS) from Archaeoglobus fulgidus (658 aa); 35.3% identity in 504 aa overlap; methionyl-tRNA synthetase complement(2887935..2889479) Clostridium perfringens str. 13 3245313 NP_563440.1 CDS metG NC_003366.1 2889580 2891517 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(2889580..2891517) Clostridium perfringens str. 13 990901 NP_563441.1 CDS CPE2525 NC_003366.1 2892007 2892588 D no significant homology N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 2892007..2892588 Clostridium perfringens str. 13 990902 NP_563442.1 CDS CPE2526 NC_003366.1 2892610 2893119 D no significant homology 5 transmembrane regions were found by PSORT.; hypothetical protein 2892610..2893119 Clostridium perfringens str. 13 990903 NP_563443.1 CDS CPE2527 NC_003366.1 2893448 2895163 R similar to pir:H81355 probable integral membrane protein Cj0832c from Campylobacter jejuni (strain NCTC 11168) (577 aa); 48.8% identity in 551 aa overlap. N-terminal signal sequence and 12 transmembrane regions were found by PSORT.; hypothetical protein complement(2893448..2895163) Clostridium perfringens str. 13 990904 NP_563444.1 CDS CPE2528 NC_003366.1 2895589 2897202 R similar to pir:S38903 hypothetical protein 1 from Clostridium pasteurianum (530 aa); 48.1% identity in 530 aa overlap. 4 transmembrane regions were found by PSORT.; hypothetical protein complement(2895589..2897202) Clostridium perfringens str. 13 990905 NP_563445.1 CDS CPE2529 NC_003366.1 2897342 2897680 R no significant homology; hypothetical protein complement(2897342..2897680) Clostridium perfringens str. 13 990906 NP_563446.1 CDS CPE2530 NC_003366.1 2897788 2899032 R similar to sp:AMPP_ECOLI XAA-PRO AMINOPEPTIDASE (EC 3.4.11.9) (X-PRO AMINOPEPTIDASE) (AMINOPEPTIDASE P II) (APP-II) (AMINOACYLPROLINE AMINOPEPTIDASE) from Escherichia coli (440 aa); 34.5% identity in 406 aa overlap; xaa-pro aminopeptidase complement(2897788..2899032) Clostridium perfringens str. 13 990907 NP_563447.1 CDS adhE NC_003366.1 2899180 2901777 R similar to pir:A49346 aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) / alcohol dehydrogenase (EC 1.1.1.1) E from Clostridium acetobutylicum (862 aa); 67.3% identity in 859 aa overlap. 1 transmembrane region was found by PSORT; bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(2899180..2901777) Clostridium perfringens str. 13 990908 NP_563448.1 CDS spmB NC_003366.1 2902205 2902723 R similar to gpu:AP001512_162 spore maturation protein from Bacillus halodurans (178 aa); 43.6% identity in 156 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; spore maturation protein B complement(2902205..2902723) Clostridium perfringens str. 13 990909 NP_563449.1 CDS spmA NC_003366.1 2902735 2903313 R similar to pir:S74647 spore maturation protein B from Synechocystis sp. (strain PCC 6803) (217 aa); 44.3% identity in 192 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; spore maturation protein A complement(2902735..2903313) Clostridium perfringens str. 13 990910 NP_563450.1 CDS CPE2534 NC_003366.1 2903428 2903607 D no significant homology; hypothetical protein 2903428..2903607 Clostridium perfringens str. 13 990911 NP_563451.1 CDS CPE2535 NC_003366.1 2903647 2905014 R similar to gpu:AP001514_169 BH2163 gene product from Bacillus halodurans (464 aa); 32.2% identity in 423 aa overlap. 12 transmembrane regions were found by PSORT.; MATE efflux family protein complement(2903647..2905014) Clostridium perfringens str. 13 990912 NP_563452.1 CDS CPE2536 NC_003366.1 2905203 2905835 R no significant homology 6 transmembrane regions were found by PSORT.; hypothetical protein complement(2905203..2905835) Clostridium perfringens str. 13 990913 NP_563453.1 CDS CPE2537 NC_003366.1 2905948 2906640 R similar to gp:AF052290_6 c-type cytochrome biogenesis protein from Synechococcus PCC7002 (246 aa); 32.6% identity in 181 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; hypothetical protein complement(2905948..2906640) Clostridium perfringens str. 13 990914 NP_563454.1 CDS CPE2538 NC_003366.1 2906644 2907078 R similar to pir:H70444 hypothetical protein aq_1669 from Aquifex aeolicus (164 aa); 37.4% identity in 91 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(2906644..2907078) Clostridium perfringens str. 13 990915 NP_563455.1 CDS ccpA NC_003366.1 2907177 2908175 R similar to gpu:AF309566_1 transcriptional regulator CcpA from Clostridium perfringens (332 aa); 99.1% identity in 332 aa overlap; transcriptional regulator complement(2907177..2908175) Clostridium perfringens str. 13 990916 NP_563456.1 CDS CPE2540 NC_003366.1 2908507 2908836 D similar to pir:S49425 sulfide dehydrogenase (EC 1.-.-.-) from Wolinella succinogenes (149 aa); 36.2% identity in 94 aa overlap; rhodanese-like domain-containing protein 2908507..2908836 Clostridium perfringens str. 13 990917 NP_563457.1 CDS ileS NC_003366.1 2908882 2912001 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase complement(2908882..2912001) Clostridium perfringens str. 13 990918 NP_563458.1 CDS CPE2542 NC_003366.1 2912668 2912883 D no significant homology; (2Fe-2S)-binding protein 2912668..2912883 Clostridium perfringens str. 13 990919 NP_563459.1 CDS CPE2543 NC_003366.1 2913051 2913659 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(2913051..2913659) Clostridium perfringens str. 13 990920 NP_563460.1 CDS CPE2544 NC_003366.1 2913823 2915751 R similar to pir:A69814 ABC transporter (ATP-binding protein) homolog yfmR from Bacillus subtilis (629 aa); 47.1% identity in 637 aa overlap. 1 transmembrane region was found by PSORT; ATP-binding protein; ABC transporter complement(2913823..2915751) Clostridium perfringens str. 13 990921 NP_563461.1 CDS CPE2545 NC_003366.1 2915882 2916487 R similar to gpu:AP001510_5 BH0830 gene product from Bacillus halodurans (186 aa); 35.5% identity in 155 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein complement(2915882..2916487) Clostridium perfringens str. 13 990922 NP_563462.1 CDS CPE2546 NC_003366.1 2916487 2917152 R similar to gpu:AP001516_108 transcriptional regulator of extracellular enzyme genes from Bacillus halodurans (224 aa); 36.7% identity in 218 aa overlap; transcriptional regulator complement(2916487..2917152) Clostridium perfringens str. 13 990923 NP_563463.1 CDS CPE2547 NC_003366.1 2917577 2917891 R no significant homology; hypothetical protein complement(2917577..2917891) Clostridium perfringens str. 13 990924 NP_563464.1 CDS CPE2548 NC_003366.1 2918053 2919228 D similar to pir:C72220 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (391 aa); 40.6% identity in 382 aa overlap; methyltransferase 2918053..2919228 Clostridium perfringens str. 13 990925 NP_563465.1 CDS CPE2549 NC_003366.1 2919593 2919940 R similar to pir:G72254 hypothetical protein from Thermotoga maritima (strain MSB8) (138 aa); 39.5% identity in 114 aa overlap; hypothetical protein complement(2919593..2919940) Clostridium perfringens str. 13 990926 NP_563466.1 CDS CPE2550 NC_003366.1 2919943 2921196 R similar to pir:F72254 hypothetical protein TM1433 from Thermotoga maritima (strain MSB8) (403 aa); 43.4% identity in 415 aa overlap; oxidoreductase, pyridine nucleotide-disulfide family complement(2919943..2921196) Clostridium perfringens str. 13 990927 NP_563467.1 CDS glpA NC_003366.1 2921209 2922639 R similar to pir:E72254 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (479 aa); 41.9% identity in 458 aa overlap. Also similar to pir:B75218 glycerol-3-phosphate dehydrogenase (glpa) PAB0183 from Pyrococcus abyssi (strain Orsay). N-terminal signal sequence was found by PSORT; glycerol-3-phosphate dehydrogenase complement(2921209..2922639) Clostridium perfringens str. 13 990928 NP_563468.1 CDS glpK NC_003366.1 2922805 2924307 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(2922805..2924307) Clostridium perfringens str. 13 990929 NP_563469.1 CDS glpP NC_003366.1 2924327 2924887 R similar to sp:YGCP_ECOLI HYPOTHETICAL 20.8 KDA PROTEIN IN CYSJ-ENO INTERGENIC REGION from Escherichia coli (strain K-12 (191 aa); 40.6% identity in 180 aa overlap. Also similar to pir:D72254 glycerol uptake operon antiterminator from Thermotoga maritima (strain MSB8). 1 transmembrane region was found by PSORT; glycerol uptake operon antiterminator complement(2924327..2924887) Clostridium perfringens str. 13 990930 NP_563470.1 CDS glpF NC_003366.1 2924929 2925636 R similar to sp:GLPF_THEMA PROBABLE GLYCEROL UPTAKE FACILITATOR PROTEIN from Thermotoga maritima (strain MSB8) (234 aa); 53.7% identity in 231 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; glycerol uptake facilitator protein complement(2924929..2925636) Clostridium perfringens str. 13 990931 NP_563471.1 CDS CPE2555 NC_003366.1 2925903 2926346 R no significant homology; hypothetical protein complement(2925903..2926346) Clostridium perfringens str. 13 990932 NP_563472.1 CDS CPE2556 NC_003366.1 2926607 2927350 R catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate; 2-phosphosulfolactate phosphatase complement(2926607..2927350) Clostridium perfringens str. 13 990933 NP_563473.1 CDS CPE2557 NC_003366.1 2927377 2928312 R similar to pir:D69999 conserved hypothetical protein ytqA from Bacillus subtilis (322 aa); 55.3% identity in 302 aa overlap; radical SAM protein complement(2927377..2928312) Clostridium perfringens str. 13 990934 NP_563474.1 CDS CPE2558 NC_003366.1 2928405 2929490 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2928405..2929490) Clostridium perfringens str. 13 990935 NP_563475.1 CDS CPE2559 NC_003366.1 2929650 2930702 D similar to pir:H69867 conserved hypothetical protein ykvI from Bacillus subtilis (347 aa); 28% identity in 329 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; hypothetical protein 2929650..2930702 Clostridium perfringens str. 13 990936 NP_563476.1 CDS CPE2560 NC_003366.1 2930754 2932070 R similar to pir:I40824 spore cortex-lytic enzyme precursor from Clostridium perfringen (438 aa); 96.1% identity in 438 aa overlap; spore cortex-lytic enzyme SleC complement(2930754..2932070) Clostridium perfringens str. 13 990937 NP_563477.1 CDS CPE2561 NC_003366.1 2932193 2933941 R similar to prf:2204349A ORF 1 from Clostridium perfringens (242 aa); 93.8% identity in 242 aa overlap. 1 transmembrane region was found by PSORT; Ser-type protease complement(2932193..2933941) Clostridium perfringens str. 13 990938 NP_563478.1 CDS CPE2562 NC_003366.1 2933944 2935641 R similar to prf:2506437A Ser-type protease from Aquifex pyrophilus (619 aa); 28.5% identity in 494 aa overlap; protease CspB complement(2933944..2935641) Clostridium perfringens str. 13 990939 NP_563479.1 CDS CPE2563 NC_003366.1 2935657 2937393 R partially similar to prf:2204349A ORF 1 from Clostridium perfringens (242 aa); 51.3% identity in 236 aa overlap. 1 transmembrane region was found by PSORT; Ser-type protease complement(2935657..2937393) Clostridium perfringens str. 13 990940 NP_563480.1 CDS CPE2564 NC_003366.1 2937534 2938205 R partially similar to pir:F72267 hypothetical protein TM1330 from Thermotoga maritima (strain MSB8) (111 aa); 40% identity in 55 aa overlap; hypothetical protein complement(2937534..2938205) Clostridium perfringens str. 13 990941 NP_563481.1 CDS CPE2565 NC_003366.1 2938206 2938580 R similar to pir:F75170 hypothetical protein PAB0357 from Pyrococcus abyssi (strain Orsay) (134 aa); 25.9% identity in 108 aa overlap; hypothetical protein complement(2938206..2938580) Clostridium perfringens str. 13 990942 NP_563482.1 CDS CPE2566 NC_003366.1 2938609 2939121 R similar to gpu:AP001512_132 peptidyl-prolyl cis-trans isomerase B (EC 5.2.1.8) from Bacillus haloduran (145 aa); 59.5% identity in 131 aa overlap; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(2938609..2939121) Clostridium perfringens str. 13 990943 NP_563483.1 CDS CPE2567 NC_003366.1 2939362 2939631 R no significant homology; hypothetical protein complement(2939362..2939631) Clostridium perfringens str. 13 990944 NP_563484.1 CDS CPE2568 NC_003366.1 2939866 2940648 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(2939866..2940648) Clostridium perfringens str. 13 990945 NP_563485.1 CDS CPE2569 NC_003366.1 2940944 2942845 D similar to prf:1407183A Gln synthetase from Clostridium acetobutylicum (443 aa); 30.3% identity in 426 aa overlap. S.D. unclear; glutamine synthetase 2940944..2942845 Clostridium perfringens str. 13 990946 NP_563486.1 CDS CPE2570 NC_003366.1 2942935 2943219 R no significant homology; hypothetical protein complement(2942935..2943219) Clostridium perfringens str. 13 990947 NP_563487.1 CDS CPE2571 NC_003366.1 2943457 2944098 R similar to gpu:AP001520_191 BH3967 gene product from Bacillus halodurans (194 aa); 27.1% identity in 170 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein complement(2943457..2944098) Clostridium perfringens str. 13 990948 NP_563488.1 CDS carB NC_003366.1 2944713 2947916 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(2944713..2947916) Clostridium perfringens str. 13 990949 NP_563489.1 CDS carA NC_003366.1 2947929 2948978 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(2947929..2948978) Clostridium perfringens str. 13 990950 NP_563490.1 CDS CPE2574 NC_003366.1 2949636 2950292 D no significant homology; hypothetical protein 2949636..2950292 Clostridium perfringens str. 13 990951 NP_563491.1 CDS CPE2575 NC_003366.1 2950548 2952020 R similar to C-terminal region of gp:AB016820_1 hydrogenase from Clostridium perfringens (572 aa); 35.4% identity in 311 aa overlap; [Fe] hydrogenase complement(2950548..2952020) Clostridium perfringens str. 13 990952 NP_563492.1 CDS CPE2576 NC_003366.1 2952091 2952708 R responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase complement(2952091..2952708) Clostridium perfringens str. 13 990953 NP_563493.1 CDS CPE2577 NC_003366.1 2953008 2953319 R similar to gpu:AP001510_85 PTS system, cellobiose-specific enzyme II, A component (EIIA-cell) from Bacillus halodurans (110 aa); 55.4% identity in 101 aa overlap; cellobiose-specific enzyme IIA component; PTS system transporter complement(2953008..2953319) Clostridium perfringens str. 13 990954 NP_563494.1 CDS proA NC_003366.1 2953420 2954667 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(2953420..2954667) Clostridium perfringens str. 13 990955 NP_563495.1 CDS proB NC_003366.1 2954670 2955479 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(2954670..2955479) Clostridium perfringens str. 13 990956 NP_563496.1 CDS CPE2580 NC_003366.1 2955566 2956444 R similar to pir:G83378 probable short-chain dehydrogenase PA2142 from Pseudomonas aeruginosa (strain PAO1) (286 aa); 53.4% identity in 283 aa overlap; oxidoreductase, short chain dehydrogenase/reductase complement(2955566..2956444) Clostridium perfringens str. 13 990957 NP_563497.1 CDS CPE2581 NC_003366.1 2956508 2957281 R similar to pir:H83564 probable short-chain dehydrogenase PA0658 from Pseudomonas aeruginosa (strain PAO1) (266 aa); 35% identity in 260 aa overlap; oxidoreductase, short-chain dehydrogenase/reductase complement(2956508..2957281) Clostridium perfringens str. 13 990958 NP_563498.1 CDS CPE2582 NC_003366.1 2957466 2958758 D similar to gpu:AP001514_36 BH2030 gene product from Bacillus halodurans (432 aa); 50.5% identity in 426 aa overlap. 12 transmembrane regions were found by PSORT.; hypothetical protein 2957466..2958758 Clostridium perfringens str. 13 990959 NP_563499.1 CDS CPE2583 NC_003366.1 2958849 2959076 D no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2958849..2959076 Clostridium perfringens str. 13 990960 NP_563500.2 CDS CPE2584 NC_003366.1 2959142 2960785 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(2959142..2960785) Clostridium perfringens str. 13 990961 NP_563501.1 CDS CPE2585 NC_003366.1 2961168 2962445 D similar to pir:H82504 conserved hypothetical protein VCA0076 from Vibrio cholerae (group O1 strain N16961) (458 aa); 47.7% identity in 426 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; nucleoside recognition domain-containing protein 2961168..2962445 Clostridium perfringens str. 13 990962 NP_563502.1 CDS CPE2586 NC_003366.1 2962484 2963272 R similar to gpu:AC022314_20 F9C16.20 from Arabidopsis thaliana (299 aa); 34.7% identity in 144 aa overlap; hypothetical protein complement(2962484..2963272) Clostridium perfringens str. 13 990963 NP_563503.1 CDS CPE2587 NC_003366.1 2963405 2963989 D similar to gpu:AP001517_123 maltose transacetylase (maltose O-acetyltransferase) from Bacillus halodurans (186 aa); 55.1% identity in 187 aa overlap; maltose transacetylase 2963405..2963989 Clostridium perfringens str. 13 990964 NP_563504.1 CDS CPE2588 NC_003366.1 2964045 2964518 D this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 2964045..2964518 Clostridium perfringens str. 13 990965 NP_563505.1 CDS CPE2589 NC_003366.1 2964520 2966004 R similar to pir:D75204 site specific DNA-methyltransferase PAB2246 from Pyrococcus abyssi (strain Orsay) (464 aa); 25.2% identity in 476 aa overlap; site specific DNA-methyltransferase complement(2964520..2966004) Clostridium perfringens str. 13 990966 NP_563506.1 CDS CPE2590 NC_003366.1 2966133 2968289 R partially similar to pir:A48653 phage infection protein precursor from Lactococcus lactis subsp. lactis (strain C2) (901 aa); 29.8% identity in 487 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; phage infection protein complement(2966133..2968289) Clostridium perfringens str. 13 990967 NP_563507.1 CDS CPE2591 NC_003366.1 2968312 2970477 R similar to pir:E69115 phage infection protein homolog from Methanobacterium thermoautotrophicum (strain Delta H) (631 aa); 28.8% identity in 713 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; phage infection protein complement(2968312..2970477) Clostridium perfringens str. 13 990968 NP_563508.1 CDS phnA NC_003366.1 2970830 2971168 R similar to sp:PHNA_ECOLI PHNA PROTEIN from Escherichia coli (111 aa); 75.9% identity in 108 aa overlap; phnA family protein complement(2970830..2971168) Clostridium perfringens str. 13 990969 NP_563509.1 CDS CPE2593 NC_003366.1 2971382 2972188 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(2971382..2972188) Clostridium perfringens str. 13 990970 NP_563510.1 CDS CPE2594 NC_003366.1 2972325 2973356 R no significant homology; hypothetical protein complement(2972325..2973356) Clostridium perfringens str. 13 990971 NP_563511.1 CDS CPE2595 NC_003366.1 2973480 2974913 R the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter complement(2973480..2974913) Clostridium perfringens str. 13 990972 NP_563512.1 CDS CPE2596 NC_003366.1 2975166 2975534 R no significant homology 4 transmembrane regions were found by PSORT.; hypothetical protein complement(2975166..2975534) Clostridium perfringens str. 13 990973 NP_563513.1 CDS CPE2597 NC_003366.1 2976070 2976468 D no significant homology N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 2976070..2976468 Clostridium perfringens str. 13 990974 NP_563514.1 CDS CPE2598 NC_003366.1 2976653 2977543 D similar to gpu:AP001512_98 oxidoreductase (short chain dehydrogenase/reductase) from Bacillus halodurans (287 aa); 60.2% identity in 284 aa overlap; short chain dehydrogenase/reductase; oxidoreductase 2976653..2977543 Clostridium perfringens str. 13 990975 NP_563515.1 CDS CPE2599 NC_003366.1 2977704 2977856 R no significant homology; hypothetical protein complement(2977704..2977856) Clostridium perfringens str. 13 990976 NP_563516.1 CDS CPE2600 NC_003366.1 2978227 2978706 R SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(2978227..2978706) Clostridium perfringens str. 13 990977 NP_563517.1 CDS CPE2601 NC_003366.1 2978953 2979324 R no significant homology N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein complement(2978953..2979324) Clostridium perfringens str. 13 990978 NP_563518.1 CDS CPE2602 NC_003366.1 2979554 2980195 R similar to pir:F72412 hypothetical protein from Thermotoga maritima (strain MSB8) (215 aa); 43% identity in 207 aa overlap; hypothetical protein complement(2979554..2980195) Clostridium perfringens str. 13 990979 NP_563519.1 CDS CPE2603 NC_003366.1 2980302 2980802 R no significant homology; hypothetical protein complement(2980302..2980802) Clostridium perfringens str. 13 990980 NP_563520.1 CDS CPE2604 NC_003366.1 2980945 2981499 R partially similar to gpu:AP001517_192 germination (cortex hydrolysis) and sporulation (stage II, multiple polar septa) from Bacillus halodurans (365 aa); 30% identity in 110 aa overlap; hypothetical protein complement(2980945..2981499) Clostridium perfringens str. 13 990981 NP_563521.1 CDS CPE2605 NC_003366.1 2981515 2982306 R similar to gpu:AP001520_247 BH4023 gene product from Bacillus halodurans (264 aa); 41.8% identity in 256 aa overlap; metallo-beta-lactamase complement(2981515..2982306) Clostridium perfringens str. 13 990982 NP_563522.1 CDS murA NC_003366.1 2982329 2983582 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(2982329..2983582) Clostridium perfringens str. 13 990983 NP_563523.1 CDS CPE2607 NC_003366.1 2983922 2984467 D no significant homology; hypothetical protein 2983922..2984467 Clostridium perfringens str. 13 990984 NP_563524.1 CDS CPE2608 NC_003366.1 2984662 2985141 D similar to gpu:AP001517_255 BH3133 gene product from Bacillus halodurans (162 aa); 32.2% identity in 149 aa overlap; hypothetical protein 2984662..2985141 Clostridium perfringens str. 13 990985 NP_563525.1 CDS CPE2609 NC_003366.1 2985197 2985628 D no significant homology N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 2985197..2985628 Clostridium perfringens str. 13 990986 NP_563526.1 CDS aprX NC_003366.1 2985695 2986891 D similar to pir:A69587 intracellular alkaline serine proteinase aprX from Bacillus subtilis (442 aa); 28.6% identity in 336 aa overlap. 1 transmembrane region was found by PSORT; subtilase 2985695..2986891 Clostridium perfringens str. 13 990987 NP_563527.1 CDS CPE2611 NC_003366.1 2986894 2987946 R partially similar to pir:S76492 lipoprotein nlpD from Synechocystis sp. (strain PCC 6803) (715 aa); 53.2% identity in 109 aa overlap. N-terminal signal sequence was found by PSORT; M23/M37 family peptidase complement(2986894..2987946) Clostridium perfringens str. 13 990988 NP_563528.1 CDS dnaD NC_003366.1 2988177 2989178 D similar to sp:DNAD_BACSU DNA REPLICATION PROTEIN DNAD from Bacillus subtilis (232 aa); 23.9% identity in 184 aa overlap; chromosome replication initiation protein 2988177..2989178 Clostridium perfringens str. 13 990989 NP_563529.1 CDS dnaC NC_003366.1 2989175 2990170 D acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 2989175..2990170 Clostridium perfringens str. 13 990990 NP_563530.1 CDS CPE2614 NC_003366.1 2991273 2991857 R no significant homology; hypothetical protein complement(2991273..2991857) Clostridium perfringens str. 13 989267 NP_563531.1 CDS CPE2615 NC_003366.1 2992054 2993250 D similar to gpu:AP001518_110 BH3279 gene product from Bacillus halodurans (422 aa); 30.1% identity in 395 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2992054..2993250 Clostridium perfringens str. 13 989268 NP_563532.1 CDS CPE2616 NC_003366.1 2993418 2994176 R partially similar to prf:2320383A thioesterase from Cuphea wrightii (398 aa); 20.8% identity in 226 aa overlap; hypothetical protein complement(2993418..2994176) Clostridium perfringens str. 13 989269 NP_563533.1 CDS CPE2617 NC_003366.1 2994199 2994939 R similar to gp:UCU17097_1 Uc FatB2 from Umbellularia californica (383 aa); 23.8% identity in 244 aa overlap; acyl-ACP thioesterase complement(2994199..2994939) Clostridium perfringens str. 13 989270 NP_563534.1 CDS CPE2618 NC_003366.1 2995072 2995614 R similar to sp:Y746_METJA HYPOTHETICAL PROTEIN MJ0746 from Methanococcus jannaschii (141 aa); 44.8% identity in 143 aa overlap; hypothetical protein complement(2995072..2995614) Clostridium perfringens str. 13 989272 NP_563535.1 CDS CPE2619 NC_003366.1 2995896 2996087 R no significant homology; hypothetical protein complement(2995896..2996087) Clostridium perfringens str. 13 989273 NP_563536.1 CDS CPE2620 NC_003366.1 2996197 2996436 R no significant homology 1 transmembrane region was found by PSORT; hypothetical protein complement(2996197..2996436) Clostridium perfringens str. 13 989274 NP_563537.1 CDS CPE2621 NC_003366.1 2996378 2996677 R partially similar to gpu:AP001513_166 BH1893 gene product from Bacillus halodurans (172 aa); 39.2% identity in 97 aa overlap; MutT/nudix family protein complement(2996378..2996677) Clostridium perfringens str. 13 989275 NP_563538.1 CDS purA NC_003366.1 2996805 2998091 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(2996805..2998091) Clostridium perfringens str. 13 989276 NP_563539.1 CDS sdhB NC_003366.1 2998572 2999252 D similar to sp:SDHB_BACSU PROBABLE L-SERINE DEHYDRATASE, BETA CHAIN (EC 4.2.1.13) (L-SERINE DEAMINASE) (SDH) (L-SD) from Bacillus subtilis (220 aa); 38.4% identity in 219 aa overlap; L-serine dehydratase subunit beta 2998572..2999252 Clostridium perfringens str. 13 989277 NP_563540.1 CDS sdhA NC_003366.1 2999253 3000134 D similar to sp:SDHA_BACSU PROBABLE L-SERINE DEHYDRATASE, ALPHA CHAIN (EC 4.2.1.13) (L-SERINE DEAMINASE) (SDH) (L-SD) from Bacillus subtilis (300 aa); 42.2% identity in 287 aa overlap. 3 transmembrane regions were found by PSORT.; L-serine dehydratase subunit alpha 2999253..3000134 Clostridium perfringens str. 13 989278 NP_563541.1 CDS CPE2625 NC_003366.1 3000370 3001542 D similar to sp:AGAS_STRCO TAGATOSE-6-PHOSPHATE KETOSE/ALDOSE ISOMERASE (EC 5.-.-.-) from Streptomyces coelicolor (385 aa); 41.2% identity in 374 aa overlap. 1 transmembrane region was found by PSORT; tagatose-6-phosphate aldose/ketose isomerase 3000370..3001542 Clostridium perfringens str. 13 989279 NP_563542.1 CDS gatY NC_003366.1 3001562 3002419 D catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 3001562..3002419 Clostridium perfringens str. 13 989280 NP_563543.1 CDS CPE2627 NC_003366.1 3002476 3003201 R similar to gpu:AP001508_142 transcriptional regulator (GntR family) from Bacillus halodurans (240 aa); 36% identity in 239 aa overlap; GntR family; GntR family transcriptional regulator complement(3002476..3003201) Clostridium perfringens str. 13 989282 NP_563544.1 CDS CPE2628 NC_003366.1 3003338 3003601 R similar to gp:AP001511_118 BH1229 gene product from Bacillus halodurans (88 aa); 25.9% identity in 58 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein complement(3003338..3003601) Clostridium perfringens str. 13 989283 NP_563545.1 CDS CPE2629 NC_003366.1 3003618 3004022 R similar to pir:WQECM3 phosphotransferase system enzyme II (EC 2.7.1.69), mannose-specific, factor IIAB from Escherichia coli (323 aa); 26.6% identity in 128 aa overlap; mannose-specific enzyme IIAB component; PTS system protein complement(3003618..3004022) Clostridium perfringens str. 13 989284 NP_563546.1 CDS CPE2630 NC_003366.1 3004195 3005001 R similar to prf:1305305C mannose permease IIm from Escherichia coli (283 aa); 35.7% identity in 266 aa overlap. 5 transmembrane regions were found by PSORT.; mannose permease IIm complement(3004195..3005001) Clostridium perfringens str. 13 989285 NP_563547.1 CDS CPE2631 NC_003366.1 3005001 3005798 R similar to prf:2306373C mannose phosphotransferase:SUBUNIT=EII from Lactobacillus curvatus (270 aa); 30.8% identity in 240 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; mannose-specific enzyme IIC component; PTS system protein complement(3005001..3005798) Clostridium perfringens str. 13 989286 NP_563548.1 CDS CPE2632 NC_003366.1 3005839 3006327 R similar to pir:WQECM3 phosphotransferase system enzyme II (EC 2.7.1.69), mannose-specific, factor IIAB from Escherichia coli (323 aa); 35.8% identity in 151 aa overlap; mannose-specific enzyme IIAB component; PTS system protein complement(3005839..3006327) Clostridium perfringens str. 13 989287 NP_563549.1 CDS proC NC_003366.1 3006605 3007405 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(3006605..3007405) Clostridium perfringens str. 13 989288 NP_563550.1 CDS dnaC NC_003366.1 3007583 3008917 R unwinds double stranded DNA; replicative DNA helicase complement(3007583..3008917) Clostridium perfringens str. 13 989289 NP_563551.1 CDS lon NC_003366.1 3009333 3011192 R similar to gpu:AP001517_173 ATP-dependent proteinase La from Bacillus halodurans (556 aa); 45.2% identity in 465 aa overlap. 1 transmembrane region was found by PSORT; ATP-dependent proteinase La complement(3009333..3011192) Clostridium perfringens str. 13 989290 NP_563552.1 CDS rplI NC_003366.1 3011247 3011693 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(3011247..3011693) Clostridium perfringens str. 13 989291 NP_563553.1 CDS CPE2637 NC_003366.1 3011695 3013653 R similar to sp:YYBT_BACSU HYPOTHETICAL 74.3 KDA PROTEIN IN RPLI-COTF INTERGENIC REGION from Bacillus subtilis (659 aa); 34.8% identity in 621 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; DHH family protein complement(3011695..3013653) Clostridium perfringens str. 13 989293 NP_563554.1 CDS CPE2638 NC_003366.1 3013686 3014681 R similar to sp:YYBS_BACSU HYPOTHETICAL 34.5 KDA PROTEIN IN RPLI-COTF INTERGENIC REGION from Bacillus subtilis (309 aa); 22.4% identity in 263 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein complement(3013686..3014681) Clostridium perfringens str. 13 989294 NP_563555.1 CDS CPE2639 NC_003366.1 3014699 3015016 R no significant homology 2 transmembrane regions were found by PSORT.; hypothetical protein complement(3014699..3015016) Clostridium perfringens str. 13 989295 NP_563556.1 CDS rpsR NC_003366.1 3015299 3015541 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(3015299..3015541) Clostridium perfringens str. 13 989296 NP_563557.1 CDS CPE2641 NC_003366.1 3015572 3016024 R similar to gp:BA1242593_64 SSB protein from Bacteriophage A118 (160 aa); 51% identity in 100 aa overlap; phage-related single-strand DNA-binding protein complement(3015572..3016024) Clostridium perfringens str. 13 989297 NP_563558.1 CDS rpsF NC_003366.1 3016038 3016328 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(3016038..3016328) Clostridium perfringens str. 13 989299 NP_563559.1 CDS CPE2643 NC_003366.1 3016469 3016681 R similar to gpu:AP001520_276 BH4052 gene product from Bacillus halodurans (65 aa); 45.6% identity in 57 aa overlap; hypothetical protein complement(3016469..3016681) Clostridium perfringens str. 13 989300 NP_563560.1 CDS CPE2644 NC_003366.1 3016718 3017578 R similar to gpu:AP001516_95 BH2666 gene product from Bacillus halodurans (276 aa); 39.3% identity in 183 aa overlap. 2 transmembrane regions were found by PSORT.; mechanosensitive ion channel protein MscS complement(3016718..3017578) Clostridium perfringens str. 13 989301 NP_563561.1 CDS CPE2645 NC_003366.1 3017611 3017844 R no significant homology; hypothetical protein complement(3017611..3017844) Clostridium perfringens str. 13 989302 NP_563562.1 CDS CPE2646 NC_003366.1 3018004 3018651 D similar to gpu:AP001514_176 BH2170 gene product from Bacillus halodurans (209 aa); 30.7% identity in 199 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 3018004..3018651 Clostridium perfringens str. 13 989303 NP_563563.1 CDS nifS NC_003366.1 3018663 3019823 D similar to gpu:AP001520_280 aminotransferase required for NAD biosynthesis (NifS protein) from Bacillus halodurans (383 aa); 37.5% identity in 379 aa overlap; cysteine desulfurase 3018663..3019823 Clostridium perfringens str. 13 989304 NP_563564.1 CDS CPE2648 NC_003366.1 3019835 3020899 D similar to pir:C70002 conserved hypothetical protein ytvI from Bacillus subtilis (371 aa); 22.8% identity in 298 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; sporulation integral membrane protein YtvI 3019835..3020899 Clostridium perfringens str. 13 989305 NP_563565.1 CDS CPE2649 NC_003366.1 3020949 3021539 D similar to gpu:AP001520_278 BH4054 gene product from Bacillus halodurans (216 aa); 49.7% identity in 169 aa overlap. 1 transmembrane region was found by PSORT; sporulation protein YyaC 3020949..3021539 Clostridium perfringens str. 13 989306 NP_563566.1 CDS CPE2650 NC_003366.1 3021690 3022187 R no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein complement(3021690..3022187) Clostridium perfringens str. 13 989307 NP_563567.1 CDS spo0J NC_003366.1 3022236 3023096 R similar to gpu:AP001520_281 stage 0 sporulation protein J from Bacillus halodurans (288 aa); 47.4% identity in 251 aa overlap; stage 0 sporulation protein J complement(3022236..3023096) Clostridium perfringens str. 13 989308 NP_563568.1 CDS soj NC_003366.1 3023097 3023870 R similar to sp:SOJ_BACSU SOJ PROTEIN from (253 aa); 57.9% identity in 247 aa overlap. 1 transmembrane region was found by PSORT; ParA family; sporulation initiation inhibitor protein soj complement(3023097..3023870) Clostridium perfringens str. 13 989309 NP_563569.1 CDS gidB NC_003366.1 3024120 3024839 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(3024120..3024839) Clostridium perfringens str. 13 989311 NP_563570.1 CDS gidA NC_003366.1 3025016 3026908 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(3025016..3026908) Clostridium perfringens str. 13 989312 NP_563571.1 CDS trmE NC_003366.1 3026923 3028299 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(3026923..3028299) Clostridium perfringens str. 13 989313 NP_563572.1 CDS jag NC_003366.1 3028641 3029264 R similar to sp:JAG_BACSU JAG PROTEIN (SPOIIIJ ASSOCIATED PROTEIN) from Bacillus subtilis (208 aa); 42% identity in 207 aa overlap; SpoIIIJ-associated protein complement(3028641..3029264) Clostridium perfringens str. 13 989315 NP_563573.1 CDS spoIIIJ NC_003366.1 3029306 3030022 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(3029306..3030022) Clostridium perfringens str. 13 989317 NP_563574.1 CDS CPE2658 NC_003366.1 3030056 3030265 R similar to pir:G72251 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (81 aa); 63.2% identity in 68 aa overlap; hypothetical protein complement(3030056..3030265) Clostridium perfringens str. 13 989324 NP_563575.1 CDS rnpA NC_003366.1 3030237 3030614 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(3030237..3030614) Clostridium perfringens str. 13 989327 NP_563576.1 CDS rpmH NC_003366.1 3030675 3030809 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(3030675..3030809) Clostridium perfringens str. 13 989350 CPEt001 tRNA CPEt001 NC_003366.1 14992 15065 D tRNA-Met 14992..15065 Clostridium perfringens str. 13 988238 CPEt002 tRNA CPEt002 NC_003366.1 15074 15146 D tRNA-Ala 15074..15146 Clostridium perfringens str. 13 988247 CPEt003 tRNA CPEt003 NC_003366.1 23283 23370 D tRNA-Ser 23283..23370 Clostridium perfringens str. 13 988233 CPEt004 tRNA CPEt004 NC_003366.1 23407 23494 D tRNA-Ser 23407..23494 Clostridium perfringens str. 13 988232 CPEt005 tRNA CPEt005 NC_003366.1 24132 24219 D tRNA-Ser 24132..24219 Clostridium perfringens str. 13 988230 CPEt006 tRNA CPEt006 NC_003366.1 24228 24315 D tRNA-Ser 24228..24315 Clostridium perfringens str. 13 988229 CPEt007 tRNA CPEt007 NC_003366.1 39798 39871 D tRNA-Arg 39798..39871 Clostridium perfringens str. 13 988218 CPEt008 tRNA CPEt008 NC_003366.1 42972 43043 D tRNA-Arg 42972..43043 Clostridium perfringens str. 13 988254 CPEt009 tRNA CPEt009 NC_003366.1 54437 54523 D tRNA-Ser 54437..54523 Clostridium perfringens str. 13 988268 CPEt010 tRNA CPEt010 NC_003366.1 77603 77676 D tRNA-Met 77603..77676 Clostridium perfringens str. 13 988292 CPEt011 tRNA CPEt011 NC_003366.1 77685 77757 D tRNA-Ala 77685..77757 Clostridium perfringens str. 13 988293 CPEt012 tRNA CPEt012 NC_003366.1 101032 101104 D tRNA-Lys 101032..101104 Clostridium perfringens str. 13 988309 CPEt013 tRNA CPEt013 NC_003366.1 110855 110926 D tRNA-Asn 110855..110926 Clostridium perfringens str. 13 988319 CPEt014 tRNA CPEt014 NC_003366.1 266809 266881 D tRNA-Phe 266809..266881 Clostridium perfringens str. 13 988448 CPEt015 tRNA CPEt015 NC_003366.1 311356 311428 R tRNA-Met complement(311356..311428) Clostridium perfringens str. 13 988484 CPEt016 tRNA CPEt016 NC_003366.1 340725 340797 D tRNA-Ala 340725..340797 Clostridium perfringens str. 13 988514 CPEt017 tRNA CPEt017 NC_003366.1 340806 340879 D tRNA-Ile 340806..340879 Clostridium perfringens str. 13 988515 CPEt018 tRNA CPEt018 NC_003366.1 344132 344204 D tRNA-Phe 344132..344204 Clostridium perfringens str. 13 988518 CPEt019 tRNA CPEt019 NC_003366.1 356964 357036 R tRNA-Pro complement(356964..357036) Clostridium perfringens str. 13 988529 CPEt020 tRNA CPEt020 NC_003366.1 637202 637274 D tRNA-Met 637202..637274 Clostridium perfringens str. 13 988765 CPEt021 tRNA CPEt021 NC_003366.1 740621 740692 D tRNA-Glu 740621..740692 Clostridium perfringens str. 13 988850 CPEt022 tRNA CPEt022 NC_003366.1 857028 857113 R tRNA-Leu complement(857028..857113) Clostridium perfringens str. 13 988946 CPEt023 tRNA CPEt023 NC_003366.1 1036499 1036587 D tRNA-Ser 1036499..1036587 Clostridium perfringens str. 13 989107 CPEt024 tRNA CPEt024 NC_003366.1 1631987 1632070 R tRNA-Leu complement(1631987..1632070) Clostridium perfringens str. 13 989690 CPEt025 tRNA CPEt025 NC_003366.1 2136677 2136767 D tRNA-Sec 2136677..2136767 Clostridium perfringens str. 13 990175 CPEt026 tRNA CPEt026 NC_003366.1 2180686 2180757 R tRNA-Cys complement(2180686..2180757) Clostridium perfringens str. 13 990211 CPEt027 tRNA CPEt027 NC_003366.1 2180766 2180836 R tRNA-Gly complement(2180766..2180836) Clostridium perfringens str. 13 990212 CPEt028 tRNA CPEt028 NC_003366.1 2180843 2180914 R tRNA-Gly complement(2180843..2180914) Clostridium perfringens str. 13 990213 CPEt029 tRNA CPEt029 NC_003366.1 2180923 2180995 R tRNA-Phe complement(2180923..2180995) Clostridium perfringens str. 13 990214 CPEt030 tRNA CPEt030 NC_003366.1 2280669 2280751 R tRNA-Leu complement(2280669..2280751) Clostridium perfringens str. 13 990305 CPEt031 tRNA CPEt031 NC_003366.1 2480320 2480392 R tRNA-Trp complement(2480320..2480392) Clostridium perfringens str. 13 990478 CPEt032 tRNA CPEt032 NC_003366.1 2480424 2480496 R tRNA-Trp complement(2480424..2480496) Clostridium perfringens str. 13 990479 CPEt033 tRNA CPEt033 NC_003366.1 2500163 2500245 R tRNA-Tyr complement(2500163..2500245) Clostridium perfringens str. 13 990495 CPEt034 tRNA CPEt034 NC_003366.1 2500254 2500326 R tRNA-Thr complement(2500254..2500326) Clostridium perfringens str. 13 990496 CPEt035 tRNA CPEt035 NC_003366.1 2500354 2500436 R tRNA-Tyr complement(2500354..2500436) Clostridium perfringens str. 13 990497 CPEt036 tRNA CPEt036 NC_003366.1 2500445 2500517 R tRNA-Thr complement(2500445..2500517) Clostridium perfringens str. 13 990498 CPEt037 tRNA CPEt037 NC_003366.1 2500539 2500611 R tRNA-Val complement(2500539..2500611) Clostridium perfringens str. 13 990499 CPEt038 tRNA CPEt038 NC_003366.1 2500619 2500701 R tRNA-Tyr complement(2500619..2500701) Clostridium perfringens str. 13 990500 CPEt039 tRNA CPEt039 NC_003366.1 2500710 2500782 R tRNA-Thr complement(2500710..2500782) Clostridium perfringens str. 13 990501 CPEt040 tRNA CPEt040 NC_003366.1 2564379 2564450 R tRNA-Asn complement(2564379..2564450) Clostridium perfringens str. 13 990566 CPEt041 tRNA CPEt041 NC_003366.1 2567512 2567585 R tRNA-Ile complement(2567512..2567585) Clostridium perfringens str. 13 990568 CPEt042 tRNA CPEt042 NC_003366.1 2567594 2567666 R tRNA-Ala complement(2567594..2567666) Clostridium perfringens str. 13 990569 CPEt043 tRNA CPEt043 NC_003366.1 2574364 2574436 R tRNA-Lys complement(2574364..2574436) Clostridium perfringens str. 13 990577 CPEt044 tRNA CPEt044 NC_003366.1 2577618 2577691 R tRNA-Ile complement(2577618..2577691) Clostridium perfringens str. 13 990580 CPEt045 tRNA CPEt045 NC_003366.1 2577700 2577772 R tRNA-Ala complement(2577700..2577772) Clostridium perfringens str. 13 990581 CPEt046 tRNA CPEt046 NC_003366.1 2584130 2584203 R tRNA-Arg complement(2584130..2584203) Clostridium perfringens str. 13 990587 CPEt047 tRNA CPEt047 NC_003366.1 2584255 2584325 R tRNA-Gly complement(2584255..2584325) Clostridium perfringens str. 13 990588 CPEt048 tRNA CPEt048 NC_003366.1 2584332 2584403 R tRNA-Gly complement(2584332..2584403) Clostridium perfringens str. 13 990589 CPEt049 tRNA CPEt049 NC_003366.1 2584430 2584510 R tRNA-Leu complement(2584430..2584510) Clostridium perfringens str. 13 990590 CPEt050 tRNA CPEt050 NC_003366.1 2584524 2584596 R tRNA-Lys complement(2584524..2584596) Clostridium perfringens str. 13 990591 CPEt051 tRNA CPEt051 NC_003366.1 2584607 2584678 R tRNA-Gln complement(2584607..2584678) Clostridium perfringens str. 13 990592 CPEt052 tRNA CPEt052 NC_003366.1 2584687 2584759 R tRNA-His complement(2584687..2584759) Clostridium perfringens str. 13 990593 CPEt053 tRNA CPEt053 NC_003366.1 2584767 2584840 R tRNA-Arg complement(2584767..2584840) Clostridium perfringens str. 13 990594 CPEt054 tRNA CPEt054 NC_003366.1 2584879 2584949 R tRNA-Gly complement(2584879..2584949) Clostridium perfringens str. 13 990595 CPEt055 tRNA CPEt055 NC_003366.1 2584956 2585027 R tRNA-Gly complement(2584956..2585027) Clostridium perfringens str. 13 990596 CPEt056 tRNA CPEt056 NC_003366.1 2585057 2585137 R tRNA-Leu complement(2585057..2585137) Clostridium perfringens str. 13 990597 CPEt057 tRNA CPEt057 NC_003366.1 2585151 2585223 R tRNA-Lys complement(2585151..2585223) Clostridium perfringens str. 13 990598 CPEt058 tRNA CPEt058 NC_003366.1 2585246 2585318 R tRNA-Lys complement(2585246..2585318) Clostridium perfringens str. 13 990599 CPEt059 tRNA CPEt059 NC_003366.1 2585328 2585399 R tRNA-Gln complement(2585328..2585399) Clostridium perfringens str. 13 990600 CPEt060 tRNA CPEt060 NC_003366.1 2585406 2585478 R tRNA-His complement(2585406..2585478) Clostridium perfringens str. 13 990601 CPEt061 tRNA CPEt061 NC_003366.1 2585486 2585559 R tRNA-Arg complement(2585486..2585559) Clostridium perfringens str. 13 990602 CPEt062 tRNA CPEt062 NC_003366.1 2585642 2585712 R tRNA-Gly complement(2585642..2585712) Clostridium perfringens str. 13 990603 CPEt063 tRNA CPEt063 NC_003366.1 2585720 2585792 R tRNA-Pro complement(2585720..2585792) Clostridium perfringens str. 13 990604 CPEt064 tRNA CPEt064 NC_003366.1 2666286 2666358 R tRNA-Lys complement(2666286..2666358) Clostridium perfringens str. 13 990672 CPEt065 tRNA CPEt065 NC_003366.1 2666406 2666476 R tRNA-Gly complement(2666406..2666476) Clostridium perfringens str. 13 990673 CPEt066 tRNA CPEt066 NC_003366.1 2666545 2666614 R tRNA-Lys complement(2666545..2666614) Clostridium perfringens str. 13 990674 CPEt067 tRNA CPEt067 NC_003366.1 2666621 2666694 R tRNA-Arg complement(2666621..2666694) Clostridium perfringens str. 13 990675 CPEt068 tRNA CPEt068 NC_003366.1 2669879 2669951 R tRNA-Lys complement(2669879..2669951) Clostridium perfringens str. 13 990679 CPEt069 tRNA CPEt069 NC_003366.1 2669974 2670044 R tRNA-Gly complement(2669974..2670044) Clostridium perfringens str. 13 990680 CPEt070 tRNA CPEt070 NC_003366.1 2670053 2670124 R tRNA-Gly complement(2670053..2670124) Clostridium perfringens str. 13 990681 CPEt071 tRNA CPEt071 NC_003366.1 2670145 2670215 R tRNA-Gly complement(2670145..2670215) Clostridium perfringens str. 13 990682 CPEt072 tRNA CPEt072 NC_003366.1 2670224 2670304 R tRNA-Leu complement(2670224..2670304) Clostridium perfringens str. 13 990683 CPEt073 tRNA CPEt073 NC_003366.1 2770593 2770665 R tRNA-Thr complement(2770593..2770665) Clostridium perfringens str. 13 990783 CPEt074 tRNA CPEt074 NC_003366.1 2805185 2805256 R tRNA-Cys complement(2805185..2805256) Clostridium perfringens str. 13 990821 CPEt075 tRNA CPEt075 NC_003366.1 2805264 2805336 R tRNA-Phe complement(2805264..2805336) Clostridium perfringens str. 13 990822 CPEt076 tRNA CPEt076 NC_003366.1 2806537 2806608 R tRNA-Asn complement(2806537..2806608) Clostridium perfringens str. 13 990823 CPEt077 tRNA CPEt077 NC_003366.1 2809789 2809862 R tRNA-Ile complement(2809789..2809862) Clostridium perfringens str. 13 990826 CPEt078 tRNA CPEt078 NC_003366.1 2809871 2809943 R tRNA-Ala complement(2809871..2809943) Clostridium perfringens str. 13 990827 CPEt079 tRNA CPEt079 NC_003366.1 2820640 2820711 R tRNA-Asn complement(2820640..2820711) Clostridium perfringens str. 13 990835 CPEt080 tRNA CPEt080 NC_003366.1 2833771 2833856 R tRNA-Leu complement(2833771..2833856) Clostridium perfringens str. 13 990845 CPEt081 tRNA CPEt081 NC_003366.1 2833876 2833949 R tRNA-Met complement(2833876..2833949) Clostridium perfringens str. 13 990846 CPEt082 tRNA CPEt082 NC_003366.1 2833956 2834028 R tRNA-Met complement(2833956..2834028) Clostridium perfringens str. 13 990847 CPEt083 tRNA CPEt083 NC_003366.1 2834039 2834124 R tRNA-Leu complement(2834039..2834124) Clostridium perfringens str. 13 990848 CPEt084 tRNA CPEt084 NC_003366.1 2834144 2834217 R tRNA-Met complement(2834144..2834217) Clostridium perfringens str. 13 990849 CPEt085 tRNA CPEt085 NC_003366.1 2834224 2834296 R tRNA-Met complement(2834224..2834296) Clostridium perfringens str. 13 990850 CPEt086 tRNA CPEt086 NC_003366.1 2834306 2834391 R tRNA-Leu complement(2834306..2834391) Clostridium perfringens str. 13 990851 CPEt087 tRNA CPEt087 NC_003366.1 2990266 2990338 R tRNA-Thr complement(2990266..2990338) Clostridium perfringens str. 13 990991 CPEt088 tRNA CPEt088 NC_003366.1 2990345 2990418 R tRNA-Asp complement(2990345..2990418) Clostridium perfringens str. 13 990992 CPEt089 tRNA CPEt089 NC_003366.1 2990433 2990505 R tRNA-Val complement(2990433..2990505) Clostridium perfringens str. 13 990993 CPEt090 tRNA CPEt090 NC_003366.1 2990515 2990586 R tRNA-Glu complement(2990515..2990586) Clostridium perfringens str. 13 990994 CPEt091 tRNA CPEt091 NC_003366.1 2990595 2990668 R tRNA-Asp complement(2990595..2990668) Clostridium perfringens str. 13 990995 CPEt092 tRNA CPEt092 NC_003366.1 2990686 2990758 R tRNA-Val complement(2990686..2990758) Clostridium perfringens str. 13 990996 CPEt093 tRNA CPEt093 NC_003366.1 2990768 2990839 R tRNA-Glu complement(2990768..2990839) Clostridium perfringens str. 13 990997 CPEt094 tRNA CPEt094 NC_003366.1 2990850 2990923 R tRNA-Asp complement(2990850..2990923) Clostridium perfringens str. 13 990998 CPEt095 tRNA CPEt095 NC_003366.1 2990940 2991012 R tRNA-Val complement(2990940..2991012) Clostridium perfringens str. 13 988216 CPEt096 tRNA CPEt096 NC_003366.1 2991020 2991089 R tRNA-Lys complement(2991020..2991089) Clostridium perfringens str. 13 989266 CPEr001 rRNA rrnA-16S NC_003366.1 10173 11680 D 16S ribosomal RNA 10173..11680 Clostridium perfringens str. 13 988236 CPEr002 rRNA rrnA-23S NC_003366.1 11869 14773 D 23S ribosomal RNA 11869..14773 Clostridium perfringens str. 13 988240 CPEr003 rRNA rrnA-5S NC_003366.1 14868 14982 D 5S ribosomal RNA 14868..14982 Clostridium perfringens str. 13 988239 CPEr004 rRNA rrnB-16S NC_003366.1 72786 74291 D 16S ribosomal RNA 72786..74291 Clostridium perfringens str. 13 988288 CPEr005 rRNA rrnB-23S NC_003366.1 74480 77384 D 23S ribosomal RNA 74480..77384 Clostridium perfringens str. 13 988290 CPEr006 rRNA rrnB-5S NC_003366.1 77479 77593 D 5S ribosomal RNA 77479..77593 Clostridium perfringens str. 13 988291 CPEr007 rRNA rrnC-16S NC_003366.1 96258 97763 D 16S ribosomal RNA 96258..97763 Clostridium perfringens str. 13 988306 CPEr008 rRNA rrnC-23S NC_003366.1 97952 100856 D 23S ribosomal RNA 97952..100856 Clostridium perfringens str. 13 988307 CPEr009 rRNA rrnC-5S NC_003366.1 100909 101022 D 5S ribosomal RNA 100909..101022 Clostridium perfringens str. 13 988308 CPEr010 rRNA rrnD-16S NC_003366.1 106097 107602 D 16S ribosomal RNA 106097..107602 Clostridium perfringens str. 13 988316 CPEr011 rRNA rrnD-23S NC_003366.1 107791 110675 D 23S ribosomal RNA 107791..110675 Clostridium perfringens str. 13 988317 CPEr012 rRNA rrnD-5S NC_003366.1 110728 110841 D 5S ribosomal RNA 110728..110841 Clostridium perfringens str. 13 988318 CPEr013 rRNA rrnE-16S NC_003366.1 261964 263470 D 16S ribosomal RNA 261964..263470 Clostridium perfringens str. 13 988445 CPEr014 rRNA rrnE-23S NC_003366.1 263659 266562 D 23S ribosomal RNA 263659..266562 Clostridium perfringens str. 13 988446 CPEr015 rRNA rrnE-5S NC_003366.1 266680 266793 D 5S ribosomal RNA 266680..266793 Clostridium perfringens str. 13 988447 CPEr016 rRNA rrnF-16S NC_003366.1 339055 340561 D 16S ribosomal RNA 339055..340561 Clostridium perfringens str. 13 988513 CPEr017 rRNA rrnF-23S NC_003366.1 340982 343885 D 23S ribosomal RNA 340982..343885 Clostridium perfringens str. 13 988516 CPEr018 rRNA rrnF-5S NC_003366.1 344003 344116 D 5S ribosomal RNA 344003..344116 Clostridium perfringens str. 13 988517 CPEr019 rRNA rrnG-16S NC_003366.1 735779 737284 D 16S ribosomal RNA 735779..737284 Clostridium perfringens str. 13 988847 CPEr020 rRNA rrnG-23S NC_003366.1 737473 740379 D 23S ribosomal RNA 737473..740379 Clostridium perfringens str. 13 988848 CPEr021 rRNA rrnG-5S NC_003366.1 740497 740610 D 5S ribosomal RNA 740497..740610 Clostridium perfringens str. 13 988849 CPEr022 rRNA rrnH-23S NC_003366.1 2564505 2567408 R 23S ribosomal RNA complement(2564505..2567408) Clostridium perfringens str. 13 990567 CPEr023 rRNA rrnH-16S NC_003366.1 2567831 2569336 R 16S ribosomal RNA complement(2567831..2569336) Clostridium perfringens str. 13 990570 CPEr024 rRNA rrnJ-5S NC_003366.1 2574446 2574559 R 5S ribosomal RNA complement(2574446..2574559) Clostridium perfringens str. 13 990578 CPEr025 rRNA rrnJ-23S NC_003366.1 2574611 2577514 R 23S ribosomal RNA complement(2574611..2577514) Clostridium perfringens str. 13 990579 CPEr026 rRNA rrnJ-16S NC_003366.1 2577937 2579442 R 16S ribosomal RNA complement(2577937..2579442) Clostridium perfringens str. 13 990582 CPEr030 rRNA CPEr030 NC_003366.1 2806412 2806531 R 5S ribosomal RNA complement(2806412..2806531) Clostridium perfringens str. 13 5228720 CPEr027 rRNA rrnI-5S NC_003366.1 2806619 2806732 R 5S ribosomal RNA complement(2806619..2806732) Clostridium perfringens str. 13 990824 CPEr028 rRNA rrnI-23S NC_003366.1 2806783 2809686 R 23S ribosomal RNA complement(2806783..2809686) Clostridium perfringens str. 13 990825 CPEr029 rRNA rrnI-16S NC_003366.1 2810107 2811612 R 16S ribosomal RNA complement(2810107..2811612) Clostridium perfringens str. 13 990828