-- dump date 20140619_044855 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type NP_149993.1 15081480 2559788 940..1692 1 NC_003042.1 250 aa, similar to pir:I40444 Spo0A activation inhibitor soj from Bacillus subtilis (253 aa); 37% identity in 250 aa overlap; ParA family; Soj protein 1692 soj 2559788 soj Clostridium perfringens str. 13 Soj protein NP_149993.1 940 D 195102 CDS NP_149994.1 15081481 2559844 1751..3031 1 NC_003042.1 426 aa, similar to gpu:AF300944_3 presumptive ParB protein from Lactococcus lactis subsplactis (242 aa); 30% identity in 266 aa overlap; ParB protein 3031 parB 2559844 parB Clostridium perfringens str. 13 ParB protein NP_149994.1 1751 D 195102 CDS NP_149995.1 15081482 2559822 3147..3509 1 NC_003042.1 120 aa, no significant homology; hypothetical protein 3509 2559822 PCP03 Clostridium perfringens str. 13 hypothetical protein NP_149995.1 3147 D 195102 CDS NP_149997.1 15081484 2559795 3773..4024 1 NC_003042.1 83 aa, similar to pir:T14710 probable transposase from Yersinia pestis (402 aa); 44% identity in 50 aa overlap; truncated; transposase 4024 2559795 PCP04 Clostridium perfringens str. 13 transposase NP_149997.1 3773 D 195102 CDS NP_149998.1 15081485 2559827 4040..4222 1 NC_003042.1 60 aa, similar to gp:AF143819_1 transposase-like protein from Escherichia coli (402 aa); 38% identity in 60 aa overlap; truncated; transposase 4222 2559827 PCP05 Clostridium perfringens str. 13 transposase NP_149998.1 4040 D 195102 CDS NP_149999.1 15081486 2559839 4588..4746 1 NC_003042.1 52 aa, similar to pir:T43600 probable transposase from Yersinia pestis (105 aa); 56% identity in 50 aa overlap; truncated; transposase 4746 2559839 PCP06 Clostridium perfringens str. 13 transposase NP_149999.1 4588 D 195102 CDS NP_150000.1 15081487 2559818 complement(5169..5804) 1 NC_003042.1 211 aa, similar to gp:AP001508_4 ABC transporter (ATP-binding protein) from Bacillus halodurans (213 aa); 49% identity in 214 aa overlap; ABC transporter 5804 2559818 PCP07 Clostridium perfringens str. 13 ABC transporter NP_150000.1 5169 R 195102 CDS NP_150001.1 15081488 2559796 complement(5804..7966) 1 NC_003042.1 720 aa, similar to gp:AP001508_3 BH0280 gene product from Bacillus halodurans (713 aa); 23% identity in 661 aa overlap; hypothetical protein 7966 2559796 PCP08 Clostridium perfringens str. 13 hypothetical protein NP_150001.1 5804 R 195102 CDS NP_150002.1 15081489 2559797 complement(8043..8354) 1 NC_003042.1 103 aa, no significant homology; hypothetical protein 8354 2559797 PCP09 Clostridium perfringens str. 13 hypothetical protein NP_150002.1 8043 R 195102 CDS NP_150003.1 15081490 2559798 8779..9012 1 NC_003042.1 77 aa, similar to probable transposase from Yersinia pestis plasmid pMT1 (402 aa); 25% identity in 158 aa overlap; truncated; transposase 9012 2559798 PCP10 Clostridium perfringens str. 13 transposase NP_150003.1 8779 D 195102 CDS NP_150004.1 15081491 2559824 9127..9366 1 NC_003042.1 79 aa, similar to probable transposase from Yersinia pestis (99 aa); 46% identity in 73 aa overlap; transposase 9366 2559824 PCP11 Clostridium perfringens str. 13 transposase NP_150004.1 9127 D 195102 CDS NP_150005.1 15081492 2559799 complement(9488..9973) 1 NC_003042.1 161 aa, similar to sp:YPI6_CLOPE HYPOTHETICAL 19.7 KDA PROTEIN (ORF6) from Clostridium perfringens plasmid pIP404 (166 aa); 25% identity in 156 aa overlap; plasmid-related; hypothetical protein 9973 2559799 PCP12 Clostridium perfringens str. 13 hypothetical protein NP_150005.1 9488 R 195102 CDS NP_150006.1 15081493 2559800 complement(10102..10281) 1 NC_003042.1 59 aa, no significant homology; hypothetical protein 10281 2559800 PCP13 Clostridium perfringens str. 13 hypothetical protein NP_150006.1 10102 R 195102 CDS NP_150007.1 15081494 2559801 10439..11113 1 NC_003042.1 224 aa, similar to gp:AP001517_204 BH3082 gene product from Bacillus halodurans (211 aa); 25% identity in 196 aa overlap; hypothetical protein 11113 2559801 PCP14 Clostridium perfringens str. 13 hypothetical protein NP_150007.1 10439 D 195102 CDS NP_150008.1 15081495 2559791 11317..11886 1 NC_003042.1 189 aa, similar to sp:RESP_CLOPE RESOLVASE (ORF8) from Clostridium perfringens plasmid pIP404 (189 aa); 92% identity in 174 aa overlap; resolvase 11886 resP 2559791 resP Clostridium perfringens str. 13 resolvase NP_150008.1 11317 D 195102 CDS NP_150009.1 15081496 2559802 12101..13366 1 NC_003042.1 421 aa, no significant homology; hypothetical protein 13366 2559802 PCP16 Clostridium perfringens str. 13 hypothetical protein NP_150009.1 12101 D 195102 CDS NP_150010.1 15081497 2559792 13654..14451 1 NC_003042.1 265 aa, similar to pir:JC6515 beta 2 toxin from Clostridium perfringens (265 aa); 91% identity in 265 aa overlap; beta2-toxin 14451 cpb2 2559792 cpb2 Clostridium perfringens str. 13 beta2-toxin NP_150010.1 13654 D 195102 CDS NP_150011.1 15081498 2559803 complement(14479..15123) 1 NC_003042.1 214 aa, no significant homology; hypothetical protein 15123 2559803 PCP18 Clostridium perfringens str. 13 hypothetical protein NP_150011.1 14479 R 195102 CDS NP_150012.1 15081499 2559804 complement(15135..15449) 1 NC_003042.1 104 aa, similar to pir:B75335 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (107 aa); 39% identity in 101 aa overlap; hypothetical protein 15449 2559804 PCP19 Clostridium perfringens str. 13 hypothetical protein NP_150012.1 15135 R 195102 CDS NP_150013.1 15081500 2559805 16008..16232 1 NC_003042.1 74 aa, no significant homology; hypothetical protein 16232 2559805 PCP20 Clostridium perfringens str. 13 hypothetical protein NP_150013.1 16008 D 195102 CDS NP_150014.1 15081501 2559843 16323..16760 1 NC_003042.1 145 aa, similar to prf:2605291A RadC protein from Bacillus sp. (119 aa); 54% identity in 119 aa overlap; DNA repair protein RadC 16760 radC 2559843 radC Clostridium perfringens str. 13 DNA repair protein RadC NP_150014.1 16323 D 195102 CDS NP_150015.1 15081502 2559817 16820..17137 1 NC_003042.1 105 aa, partially similar to gp:AF225463_1 SpoIIGB from Clostridium bifermentans (107 aa); 34% identity in 73 aa overlap; hypothetical protein 17137 2559817 PCP22 Clostridium perfringens str. 13 hypothetical protein NP_150015.1 16820 D 195102 CDS NP_150016.1 15081503 2559806 17161..17484 1 NC_003042.1 107 aa, no significant homology; hypothetical protein 17484 2559806 PCP23 Clostridium perfringens str. 13 hypothetical protein NP_150016.1 17161 D 195102 CDS NP_150017.1 15081504 2559807 17739..17942 1 NC_003042.1 67 aa, no significant homology; hypothetical protein 17942 2559807 PCP24 Clostridium perfringens str. 13 hypothetical protein NP_150017.1 17739 D 195102 CDS NP_150018.1 15081505 2559783 18016..18405 1 NC_003042.1 129 aa, no significant homology; hypothetical protein 18405 2559783 PCP25 Clostridium perfringens str. 13 hypothetical protein NP_150018.1 18016 D 195102 CDS NP_150019.1 15081506 2559784 18575..19642 1 NC_003042.1 355 aa, no significant homology; hypothetical protein 19642 2559784 PCP26 Clostridium perfringens str. 13 hypothetical protein NP_150019.1 18575 D 195102 CDS NP_150020.1 15081507 2559785 19722..19919 1 NC_003042.1 65 aa, similar to pir:S75025 hypothetical protein slr1999 from Synechocystis sp. (strain PCC 6803) (136 aa); 45% identity in 53 aa overlap; hypothetical protein 19919 2559785 PCP27 Clostridium perfringens str. 13 hypothetical protein NP_150020.1 19722 D 195102 CDS NP_150021.1 15081508 2559786 19969..20385 1 NC_003042.1 138 aa, similar to pir:T13557 hypothetical protein 17 from Bacillus phage phi-105 (138 aa); 48% identity in 134 aa overlap; phage-related; hypothetical protein 20385 2559786 PCP28 Clostridium perfringens str. 13 hypothetical protein NP_150021.1 19969 D 195102 CDS NP_150022.1 15081509 2559787 20737..21495 1 NC_003042.1 252 aa, no significant homology; hypothetical protein 21495 2559787 PCP29 Clostridium perfringens str. 13 hypothetical protein NP_150022.1 20737 D 195102 CDS NP_150023.1 15081510 2559782 21612..22625 1 NC_003042.1 337 aa, similar to gp:AP001508_32 BH0309 gene product from Bacillus halodurans (338 aa); 23% identity in 343 aa overlap; hypothetical protein 22625 2559782 PCP30 Clostridium perfringens str. 13 hypothetical protein NP_150023.1 21612 D 195102 CDS NP_150024.1 15081511 2559809 22653..23123 1 NC_003042.1 156 aa, no significant homology; hypothetical protein 23123 2559809 PCP31 Clostridium perfringens str. 13 hypothetical protein NP_150024.1 22653 D 195102 CDS NP_150025.1 15081512 2559808 23328..23513 1 NC_003042.1 61 aa, similar to gp:AF179847_5 putative resolvase from Lactococcus lactis (199 aa); 38% identity in 65 aa overlap; truncated; resolvase 23513 2559808 PCP32 Clostridium perfringens str. 13 resolvase NP_150025.1 23328 D 195102 CDS NP_150026.1 15081513 2559810 23553..23795 1 NC_003042.1 80 aa, no significant homology; hypothetical protein 23795 2559810 PCP33 Clostridium perfringens str. 13 hypothetical protein NP_150026.1 23553 D 195102 CDS NP_150027.1 15081514 2559811 complement(24051..24548) 1 NC_003042.1 165 aa, no significant homology; hypothetical protein 24548 2559811 PCP34 Clostridium perfringens str. 13 hypothetical protein NP_150027.1 24051 R 195102 CDS NP_150028.1 15081515 2559812 complement(24604..25965) 1 NC_003042.1 453 aa, partially similar to sp:PRIM_CLOAB DNA PRIMASE (EC 2.7.7.-) from Clostridium acetobutyricum (596 aa); 21% identity in 402 aa overlap; hypothetical protein 25965 2559812 PCP35 Clostridium perfringens str. 13 hypothetical protein NP_150028.1 24604 R 195102 CDS NP_150029.1 15081516 2559813 complement(25943..27403) 1 NC_003042.1 486 aa, similar to gp:AF188935_80 pXO2-81 from Bacillus anthracis (589 aa); 28% identity in 500 aa overlap; plasmid-related; hypothetical protein 27403 2559813 PCP36 Clostridium perfringens str. 13 hypothetical protein NP_150029.1 25943 R 195102 CDS NP_150030.1 15081517 2559814 complement(27506..27670) 1 NC_003042.1 54 aa, no significant homology; hypothetical protein 27670 2559814 PCP37 Clostridium perfringens str. 13 hypothetical protein NP_150030.1 27506 R 195102 CDS NP_150031.1 15081518 2559829 complement(27747..27965) 1 NC_003042.1 72 aa, no significant homology; hypothetical protein 27965 2559829 PCP38 Clostridium perfringens str. 13 hypothetical protein NP_150031.1 27747 R 195102 CDS NP_150032.1 15081519 2559815 complement(27983..29116) 1 NC_003042.1 377 aa, similar to gp:AF188935_83 pXO2-84 from Bacillus anthracis (490 aa); 31% identity in 421 aa overlap; plasmid-related; hypothetical protein 29116 2559815 PCP39 Clostridium perfringens str. 13 hypothetical protein NP_150032.1 27983 R 195102 CDS NP_150033.1 15081520 2559833 complement(29119..29526) 1 NC_003042.1 135 aa, no significant homology; hypothetical protein 29526 2559833 PCP40 Clostridium perfringens str. 13 hypothetical protein NP_150033.1 29119 R 195102 CDS NP_150034.1 15081521 2559820 complement(29533..29799) 1 NC_003042.1 88 aa, no significant homology; hypothetical protein 29799 2559820 PCP41 Clostridium perfringens str. 13 hypothetical protein NP_150034.1 29533 R 195102 CDS NP_150035.1 15081522 2559819 complement(29800..30003) 1 NC_003042.1 67 aa, no significant homology; hypothetical protein 30003 2559819 PCP42 Clostridium perfringens str. 13 hypothetical protein NP_150035.1 29800 R 195102 CDS NP_150036.1 15081523 2559816 complement(30127..31041) 1 NC_003042.1 304 aa, similar to gp:AF188935_5 pXO2-05 from Bacillus anthracis (282 aa); 25% identity in 227 aa overlap; plasmid-related; hypothetical protein 31041 2559816 PCP43 Clostridium perfringens str. 13 hypothetical protein NP_150036.1 30127 R 195102 CDS NP_150037.1 15081524 2559831 complement(31168..32331) 1 NC_003042.1 387 aa, similar to pir:F70031 cell wall-binding protein homolog yvcE from Bacillus subtilis (473 aa); 47% identity in 168 aa overlap; cell wall-binding protein 32331 2559831 PCP44 Clostridium perfringens str. 13 cell wall-binding protein NP_150037.1 31168 R 195102 CDS NP_150038.1 15081525 2559821 complement(32417..33106) 1 NC_003042.1 229 aa, no significant homology; hypothetical protein 33106 2559821 PCP45 Clostridium perfringens str. 13 hypothetical protein NP_150038.1 32417 R 195102 CDS NP_150039.1 15081526 2559836 complement(33111..35009) 1 NC_003042.1 632 aa, similar to gp:AF188935_9 pXO2.09 from Bacillus anthracis (643 aa); 33% identity in 640 aa overlap; plasmid-related; hypothetical protein 35009 2559836 PCP46 Clostridium perfringens str. 13 hypothetical protein NP_150039.1 33111 R 195102 CDS NP_150040.1 15081527 2559826 complement(35027..37138) 1 NC_003042.1 703 aa, similar to gp:AF007787_9 type I topoisomerase from Enterococcus faecalis (714 aa); 31% identity in 742 aa overlap; type I topoisomease 37138 topA 2559826 topA Clostridium perfringens str. 13 type I topoisomease NP_150040.1 35027 R 195102 CDS NP_150041.1 15081528 2559828 complement(37182..37826) 1 NC_003042.1 214 aa, similar to gp:AF188935_10 pXO2-10 from Bacillus anthracis (222 aa); 23% identity in 222 aa overlap; plasmid-related; hypothetical protein 37826 2559828 PCP48 Clostridium perfringens str. 13 hypothetical protein NP_150041.1 37182 R 195102 CDS NP_150042.1 15081529 2559835 complement(37937..38218) 1 NC_003042.1 93 aa, no significant homology; hypothetical protein 38218 2559835 PCP49 Clostridium perfringens str. 13 hypothetical protein NP_150042.1 37937 R 195102 CDS NP_150043.1 15081530 2559789 complement(38221..40350) 1 NC_003042.1 709 aa, similar to gp:AF188935_14 pXO2-14 from Bacillus anthracis (952 aa); 21% identity in 798 aa overlap; plasmid-related; hypothetical protein 40350 2559789 PCP50 Clostridium perfringens str. 13 hypothetical protein NP_150043.1 38221 R 195102 CDS NP_150044.1 15081531 2559790 complement(40347..43088) 1 NC_003042.1 913 aa, similar to gp:AF188935_16 pXO2-16 from Bacillus anthracis (611 aa); 35% identity in 650 aa overlap; plasmid-related; hypothetical protein 43088 2559790 PCP51 Clostridium perfringens str. 13 hypothetical protein NP_150044.1 40347 R 195102 CDS NP_150045.1 15081532 2559834 complement(43075..43287) 1 NC_003042.1 70 aa, no significant homology; hypothetical protein 43287 2559834 PCP52 Clostridium perfringens str. 13 hypothetical protein NP_150045.1 43075 R 195102 CDS NP_150046.1 15081533 2559832 complement(43355..43591) 1 NC_003042.1 78 aa, no significant homology; hypothetical protein 43591 2559832 PCP53 Clostridium perfringens str. 13 hypothetical protein NP_150046.1 43355 R 195102 CDS NP_150047.1 15081534 2559837 complement(43655..43849) 1 NC_003042.1 64 aa, no significant homology; hypothetical protein 43849 2559837 PCP54 Clostridium perfringens str. 13 hypothetical protein NP_150047.1 43655 R 195102 CDS NP_150048.1 15081535 2559838 complement(43842..44300) 1 NC_003042.1 152 aa, partially similar to gp:CBE288947_2 Spo0A protein from Clostridium beijerinckii (273 aa); 28% identity in 112 aa overlap; Spo0A-like protein 44300 2559838 PCP55 Clostridium perfringens str. 13 Spo0A-like protein NP_150048.1 43842 R 195102 CDS NP_150049.1 15081536 2559842 complement(44413..45009) 1 NC_003042.1 198 aa, similar to gp:AP001514_133 BH2127 gene product from Bacillus halodurans (194 aa); 29% identity in 174 aa overlap; hypothetical protein 45009 2559842 PCP56 Clostridium perfringens str. 13 hypothetical protein NP_150049.1 44413 R 195102 CDS NP_150050.1 15081537 2559840 complement(45255..49361) 1 NC_003042.1 1368 aa, similar to gp:AP001514_20 BH2014 gene product from Bacillus halodurans (1816 aa); 30% identity in 718 aa overlap. Also similar to pir:A42404 collagen adhesin from Staphylococcus aureus (1185 aa); 23% identity in 813 aa overlap; collagen adhesin 49361 cna 2559840 cna Clostridium perfringens str. 13 collagen adhesin NP_150050.1 45255 R 195102 CDS NP_150051.1 15081538 2559825 complement(49506..49856) 1 NC_003042.1 116 aa, similar to gp:SASIGFACB_1 ORF1 gene product from Staphylococcus aureus (120 aa); 41% identity in 112 aa overlap; hypothetical protein 49856 2559825 PCP58 Clostridium perfringens str. 13 hypothetical protein NP_150051.1 49506 R 195102 CDS NP_150052.1 15081539 2559830 complement(49980..51053) 1 NC_003042.1 357 aa, similar to pir:A81049 TonB protein NMB1730 from Neisseria meningitidis (280 aa); 38% identity in 120 aa overlap; hypothetical protein 51053 2559830 PCP59 Clostridium perfringens str. 13 hypothetical protein NP_150052.1 49980 R 195102 CDS NP_150053.1 15081540 2559823 complement(51099..51584) 1 NC_003042.1 161 aa, no significant homology; hypothetical protein 51584 2559823 PCP60 Clostridium perfringens str. 13 hypothetical protein NP_150053.1 51099 R 195102 CDS NP_150054.1 15081541 2559794 51897..53000 1 NC_003042.1 367 aa, similar to pir:D69944 transcription regulator phage-related homolog yqaE from Bacillus subtilis (116 aa); 37% identity in 109 aa overlap; transcription regulator phage-related 53000 2559794 PCP61 Clostridium perfringens str. 13 transcription regulator phage-related NP_150054.1 51897 D 195102 CDS NP_150055.1 15081542 2559793 complement(53114..53560) 1 NC_003042.1 148 aa, no significant homology; hypothetical protein 53560 2559793 PCP62 Clostridium perfringens str. 13 hypothetical protein NP_150055.1 53114 R 195102 CDS NP_150056.1 15081543 2559841 complement(53589..54239) 1 NC_003042.1 216 aa, no significant homology; hypothetical protein 54239 2559841 PCP63 Clostridium perfringens str. 13 hypothetical protein NP_150056.1 53589 R 195102 CDS NP_560917.1 18308983 988245 410..1783 1 NC_003366.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 1783 dnaA 988245 dnaA Clostridium perfringens str. 13 chromosome replication initiator DnaA NP_560917.1 410 D 195102 CDS NP_560918.1 18308984 988244 2078..3178 1 NC_003366.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 3178 dnaN 988244 dnaN Clostridium perfringens str. 13 DNA polymerase III subunit beta NP_560918.1 2078 D 195102 CDS NP_560919.1 18308985 988241 3304..3510 1 NC_003366.1 similar to pir|H75402 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (104 aa); % identity in 57 aa overlap; S4 domain-containing protein 3510 988241 CPE0003 Clostridium perfringens str. 13 S4 domain-containing protein NP_560919.1 3304 D 195102 CDS NP_560920.1 18308986 988243 3566..4651 1 NC_003366.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4651 recF 988243 recF Clostridium perfringens str. 13 recombination protein F NP_560920.1 3566 D 195102 CDS NP_560921.1 18308987 988242 4665..4925 1 NC_003366.1 similar to pir:T46554 hypothetical protein X from Clostridium acetobutylicum (87 aa); 78.6% identity in 84 aa overlap; hypothetical protein 4925 988242 CPE0005 Clostridium perfringens str. 13 hypothetical protein NP_560921.1 4665 D 195102 CDS NP_560922.1 18308988 988246 5162..7078 1 NC_003366.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 7078 gyrB 988246 gyrB Clostridium perfringens str. 13 DNA gyrase subunit B NP_560922.1 5162 D 195102 CDS NP_560923.1 18308989 988235 7100..9391 1 NC_003366.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 9391 gyrA 988235 gyrA Clostridium perfringens str. 13 DNA gyrase subunit A NP_560923.1 7100 D 195102 CDS NP_560924.1 18308990 988237 9369..9620 1 NC_003366.1 no significant homology.; hypothetical protein 9620 988237 CPE0008 Clostridium perfringens str. 13 hypothetical protein NP_560924.1 9369 D 195102 CDS NP_560925.1 18308991 988248 15422..15625 1 NC_003366.1 no significant homology.; hypothetical protein 15625 988248 CPE0009 Clostridium perfringens str. 13 hypothetical protein NP_560925.1 15422 D 195102 CDS NP_560926.1 18308992 988249 15633..15926 1 NC_003366.1 no significant homology. ATT start; hypothetical protein 15926 988249 CPE0010 Clostridium perfringens str. 13 hypothetical protein NP_560926.1 15633 D 195102 CDS NP_560927.1 18308993 988250 16277..19033 1 NC_003366.1 similar to pir:D69427 conserved hypothetical protein AF1421 from Archaeoglobus fulgidus (880 aa); 31.7% identity in 881 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; hypothetical protein 19033 988250 CPE0011 Clostridium perfringens str. 13 hypothetical protein NP_560927.1 16277 D 195102 CDS NP_560928.1 18308994 988251 19276..20670 1 NC_003366.1 similar to pir:E72254 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (479 aa); 31.4% identity in 455 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 20670 988251 CPE0012 Clostridium perfringens str. 13 hypothetical protein NP_560928.1 19276 D 195102 CDS NP_560929.1 18308995 988252 20683..20916 1 NC_003366.1 no significant homology.; hypothetical protein 20916 988252 CPE0013 Clostridium perfringens str. 13 hypothetical protein NP_560929.1 20683 D 195102 CDS NP_560930.2 161485645 988253 21268..22545 1 NC_003366.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 22545 serS 988253 serS Clostridium perfringens str. 13 seryl-tRNA synthetase NP_560930.2 21268 D 195102 CDS NP_560931.1 18308997 988234 22722..23141 1 NC_003366.1 no significant homology.; hypothetical protein 23141 988234 CPE0015 Clostridium perfringens str. 13 hypothetical protein NP_560931.1 22722 D 195102 CDS NP_560932.1 18308998 988231 23757..24023 1 NC_003366.1 no significant homology. 2 transmembrane regions were found by PSORT.; hypothetical protein 24023 988231 CPE0016 Clostridium perfringens str. 13 hypothetical protein NP_560932.1 23757 D 195102 CDS NP_560933.1 18308999 988228 complement(24353..24535) 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 24535 988228 CPE0017 Clostridium perfringens str. 13 hypothetical protein NP_560933.1 24353 R 195102 CDS NP_560934.1 18309000 988227 24773..25654 1 NC_003366.1 no significant homology.; hypothetical protein 25654 988227 CPE0018 Clostridium perfringens str. 13 hypothetical protein NP_560934.1 24773 D 195102 CDS NP_560935.1 18309001 988226 complement(25743..25907) 1 NC_003366.1 no significant homology.; hypothetical protein 25907 988226 CPE0019 Clostridium perfringens str. 13 hypothetical protein NP_560935.1 25743 R 195102 CDS NP_560936.1 18309002 988225 26116..29592 1 NC_003366.1 similar to sp:ADDB_BACSU ATP-DEPENDENT NUCLEASE SUBUNIT B from Bacillus subtilis (1166 aa); 32.7% identity in 1153 aa overlap. 1 transmembrane region was found by PSORT; ATP-dependent deoxyribonuclease subunit B 29592 addB 988225 addB Clostridium perfringens str. 13 ATP-dependent deoxyribonuclease subunit B NP_560936.1 26116 D 195102 CDS NP_560937.1 18309003 988224 29582..33388 1 NC_003366.1 similar to sp:ADDA_BACSU ATP-DEPENDENT NUCLEASE SUBUNIT A from Bacillus subtilis (1232 aa); 39.9% identity in 1256 aa overlap; ATP-dependent deoxyribonuclease subunit A 33388 addA 988224 addA Clostridium perfringens str. 13 ATP-dependent deoxyribonuclease subunit A NP_560937.1 29582 D 195102 CDS NP_560938.1 18309004 988223 complement(33646..34920) 1 NC_003366.1 similar to pir:A70188 polynucleotide adenylyltransferase (papS) homolog from Borrelia burgdorferi (410 aa); 38.2% identity in 411 aa overlap; poly(A) polymerase 34920 papS 988223 papS Clostridium perfringens str. 13 poly(A) polymerase NP_560938.1 33646 R 195102 CDS NP_560939.1 18309005 988222 35030..36022 1 NC_003366.1 similar to pir:G69818 CMP-binding factor homolog yhaM from Bacillus subtilis (314 aa); 41.2% identity in 301 aa overlap; CMP-binding factor 36022 988222 CPE0023 Clostridium perfringens str. 13 CMP-binding factor NP_560939.1 35030 D 195102 CDS NP_560940.1 18309006 988221 complement(36054..37214) 1 NC_003366.1 C-terminal portion is similar to pir:A69760 conserved hypothetical protein yciB from Bacillus subtilis (194 aa); 33.9% identity in 165 aa overlap. N-terminal signal sequence was found by PSORT; ErfK/YbiS/YcfS/YnhG family protein 37214 988221 CPE0024 Clostridium perfringens str. 13 ErfK/YbiS/YcfS/YnhG family protein NP_560940.1 36054 R 195102 CDS NP_560941.1 18309007 988220 37407..38627 1 NC_003366.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 38627 pepT 988220 pepT Clostridium perfringens str. 13 peptidase T NP_560941.1 37407 D 195102 CDS NP_560942.1 18309008 988219 complement(38733..39608) 1 NC_003366.1 similar to pir:D69841 hypothetical protein yitS from Bacillus subtilis (283 aa); 36.8% identity in 280 aa overlap. 1 transmembrane region was found by PSORT; degV family protein 39608 988219 CPE0026 Clostridium perfringens str. 13 degV family protein NP_560942.1 38733 R 195102 CDS NP_560943.1 18309009 988217 40045..41184 1 NC_003366.1 partially similar to gpu:AE004265_8 hypothetical protein from Vibrio cholerae (383 aa); 27.3% identity in 161 aa overlap; hypothetical protein 41184 988217 CPE0027 Clostridium perfringens str. 13 hypothetical protein NP_560943.1 40045 D 195102 CDS NP_560944.1 18309010 988289 complement(41300..42184) 1 NC_003366.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 42184 psdD 988289 psdD Clostridium perfringens str. 13 phosphatidylserine decarboxylase NP_560944.1 41300 R 195102 CDS NP_560945.1 18309011 988255 42348..42917 1 NC_003366.1 similar to pir:S38906 hypothetical protein 4 from Clostridium pasteurianum (190 aa); 45.7% identity in 186 aa overlap; TetR/AcrR family; TetR family transcriptional regulator 42917 988255 CPE0029 Clostridium perfringens str. 13 TetR family transcriptional regulator NP_560945.1 42348 D 195102 CDS NP_560946.1 18309012 988256 43192..44457 1 NC_003366.1 similar to pir:F72326 hemolysin-related protein from Thermotoga maritima (strain MSB8) (455 aa); 34.2% identity in 401 aa overlap.Similar to many hemolysins. N-terminal signal sequence and 3 transmembrane regions were found by PSORT; hemolysin-like protein 44457 hlyA 988256 hlyA Clostridium perfringens str. 13 hemolysin-like protein NP_560946.1 43192 D 195102 CDS NP_560947.1 18309013 988257 44460..44891 1 NC_003366.1 similar to sp:YAAJ_BACSU HYPOTHETICAL 17.8 KDA PROTEIN IN SERS-DNAH INTERGENIC REGION from Bacillus subtilis (161 aa); 52.8% identity in 125 aa overlap; cytidine/deoxycytidylate deaminase 44891 988257 CPE0031 Clostridium perfringens str. 13 cytidine/deoxycytidylate deaminase NP_560947.1 44460 D 195102 CDS NP_560948.1 18309014 988258 44954..45412 1 NC_003366.1 no significant homology.; hypothetical protein 45412 988258 CPE0032 Clostridium perfringens str. 13 hypothetical protein NP_560948.1 44954 D 195102 CDS NP_560949.1 18309015 988259 45536..45901 1 NC_003366.1 no significant homology. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 45901 988259 CPE0033 Clostridium perfringens str. 13 hypothetical protein NP_560949.1 45536 D 195102 CDS NP_560950.1 18309016 988260 46011..46673 1 NC_003366.1 similar to sp:Y531_BORBU HYPOTHETICAL PROTEIN BB0531 PRECURSOR from Borrelia burgdorferi (204 aa); 27.5% identity in 193 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 46673 988260 CPE0034 Clostridium perfringens str. 13 hypothetical protein NP_560950.1 46011 D 195102 CDS NP_560951.1 18309017 988261 complement(46787..48259) 1 NC_003366.1 similar to sp:YPLC_CLOPE HYPOTHETICAL 55.7 KDA PROTEIN IN PLC 5'REGION (ORF 2) from Clostridium perfringens (490 aa); 98.8% identity in 490 aa overlap; hypothetical protein 48259 yplC 988261 yplC Clostridium perfringens str. 13 hypothetical protein NP_560951.1 46787 R 195102 CDS NP_560952.1 18309018 988262 48590..49786 1 NC_003366.1 similar to gp:CLOCPAA_1 alpha-toxin (phospholipase C) from Clostridium perfringens (398 aa); 100% identity in 398 aa overlap. N-terminal signal sequence was found by PSORT; alpha-toxin; phospholipase C 49786 plc 988262 plc Clostridium perfringens str. 13 phospholipase C NP_560952.1 48590 D 195102 CDS NP_560953.1 18309019 988263 49974..50900 1 NC_003366.1 similar to pir:H70313 cobalamin synthesis related protein CobW from Aquifex aeolicus (292 aa); 30.7% identity in 261 aa overlap; CobW/P47K family protein 50900 cobW 988263 cobW Clostridium perfringens str. 13 CobW/P47K family protein NP_560953.1 49974 D 195102 CDS NP_560954.1 18309020 988264 50920..51504 1 NC_003366.1 similar to pir:B69760 conserved hypothetical protein yciC from Bacillus subtilis (397 aa); 28.2% identity in 174 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 51504 988264 CPE0038 Clostridium perfringens str. 13 hypothetical protein NP_560954.1 50920 D 195102 CDS NP_560955.1 18309021 988265 51507..52400 1 NC_003366.1 similar to gpu:AP001512_105 BH1518 gene product from Bacillus halodurans (337 aa); 39.6% identity in 283 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 52400 988265 CPE0039 Clostridium perfringens str. 13 hypothetical protein NP_560955.1 51507 D 195102 CDS NP_560956.1 18309022 988266 52413..53132 1 NC_003366.1 partially similar to gpu:AP001512_104 BH1517 gene product from Bacillus halodurans (321 aa); 26.9% identity in 108 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 53132 988266 CPE0040 Clostridium perfringens str. 13 hypothetical protein NP_560956.1 52413 D 195102 CDS NP_560957.1 18309023 988267 53398..54186 1 NC_003366.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 54186 988267 CPE0041 Clostridium perfringens str. 13 prolipoprotein diacylglyceryl transferase NP_560957.1 53398 D 195102 CDS NP_560958.1 18309024 988269 54959..55462 1 NC_003366.1 similar to gp:CLOSERTRNA_1 Orf1 from Clostridium perfringens (167 aa); 82.6% identity in 167 aa overlap; lipoprotein 55462 988269 CPE0042 Clostridium perfringens str. 13 lipoprotein NP_560958.1 54959 D 195102 CDS NP_560959.1 18309025 988270 55899..57185 1 NC_003366.1 similar to gp:CLOSERTRNA_2 sodium-coupled branched-chain amino acid carrier from Clostridium perfringens (338 aa); 95.3% identity in 338 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT; branched chain amino acid ABC transporter carrier protein 57185 brnQ 988270 brnQ Clostridium perfringens str. 13 branched chain amino acid ABC transporter carrier protein NP_560959.1 55899 D 195102 CDS NP_560960.1 18309026 988271 complement(57339..57824) 1 NC_003366.1 similar to pir:S52336 dihydrofolate reductase (EC 1.5.1.3) from Haemophilus influenzae (clinical isolate R1042) (160 aa); 40.4% identity in 136 aa overlap; dihydrofolate reductase 57824 folA 988271 folA Clostridium perfringens str. 13 dihydrofolate reductase NP_560960.1 57339 R 195102 CDS NP_560961.1 18309027 988272 58015..59658 1 NC_003366.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 59658 dnaX 988272 dnaX Clostridium perfringens str. 13 DNA polymerase III subunits gamma and tau NP_560961.1 58015 D 195102 CDS NP_560962.1 18309028 988273 59770..60108 1 NC_003366.1 similar to sp|P24281|YAAK_BACSU HYPOTHETICAL 11.8 KD PROTEIN IN DNAZ-RECR INTERGENIC REGION from Bacillus subtilis (107 aa); 60% identity in 50 aa overlap; hypothetical protein 60108 988273 CPE0046 Clostridium perfringens str. 13 hypothetical protein NP_560962.1 59770 D 195102 CDS NP_560963.1 18309029 988274 60206..60802 1 NC_003366.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 60802 recR 988274 recR Clostridium perfringens str. 13 recombination protein RecR NP_560963.1 60206 D 195102 CDS NP_560964.1 18309030 988275 61028..61306 1 NC_003366.1 no significant homology.; hypothetical protein 61306 988275 CPE0048 Clostridium perfringens str. 13 hypothetical protein NP_560964.1 61028 D 195102 CDS NP_560965.1 18309031 988276 61322..61600 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 61600 988276 CPE0049 Clostridium perfringens str. 13 hypothetical protein NP_560965.1 61322 D 195102 CDS NP_560966.1 18309032 988277 61875..63005 1 NC_003366.1 no significant homology. 8 transmembrane regions were found by PSORT.; hypothetical protein 63005 988277 CPE0050 Clostridium perfringens str. 13 hypothetical protein NP_560966.1 61875 D 195102 CDS NP_560967.1 18309033 988278 63169..63348 1 NC_003366.1 no significant homology.; hypothetical protein 63348 988278 CPE0051 Clostridium perfringens str. 13 hypothetical protein NP_560967.1 63169 D 195102 CDS NP_560968.1 18309034 988279 63417..63599 1 NC_003366.1 no significant homology.; hypothetical protein 63599 988279 CPE0052 Clostridium perfringens str. 13 hypothetical protein NP_560968.1 63417 D 195102 CDS NP_560969.1 18309035 988280 63763..64839 1 NC_003366.1 similar to pir:E71001 probable transaminase (EC 2.6.1.-) PH1308 from Pyrococcus horikoshii (386 aa); 38.6% identity in 342 aa overlap; class V aminotransferase 64839 988280 CPE0053 Clostridium perfringens str. 13 class V aminotransferase NP_560969.1 63763 D 195102 CDS NP_560970.1 18309036 988281 64908..65813 1 NC_003366.1 similar to pir:B72257 D-3-phosphoglycerate dehydrogenase from Thermotoga maritima (strain MSB8) (306 aa); 42.4% identity in 297 aa overlap; D-3-phosphoglycerate dehydrogenase 65813 serA 988281 serA Clostridium perfringens str. 13 D-3-phosphoglycerate dehydrogenase NP_560970.1 64908 D 195102 CDS NP_560971.1 18309037 988282 65960..67216 1 NC_003366.1 similar to pir:G72244 hypothetical protein from Thermotoga maritima (strain MSB8) (406 aa); 41.9% identity in 415 aa overlap; hypothetical protein 67216 988282 CPE0055 Clostridium perfringens str. 13 hypothetical protein NP_560971.1 65960 D 195102 CDS NP_560972.1 18309038 988283 complement(67272..67967) 1 NC_003366.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 67967 mtn 988283 mtn Clostridium perfringens str. 13 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase NP_560972.1 67272 R 195102 CDS NP_560973.1 18309039 988284 68347..69108 1 NC_003366.1 similar to gpu:AP001511_144 BH1255 gene product from Bacillus halodurans (259 aa); 37.4% identity in 246 aa overlap. 2 transmembrane regions were found by PSORT.; HesA/MoeB/ThiF family protein 69108 988284 CPE0057 Clostridium perfringens str. 13 HesA/MoeB/ThiF family protein NP_560973.1 68347 D 195102 CDS NP_560974.1 18309040 988285 69399..70565 1 NC_003366.1 similar to pir:S66834 probable membrane protein YOL137w from yeast (Saccharomyces cerevisiae) (497 aa); 25.2% identity in 262 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; hypothetical protein 70565 988285 CPE0058 Clostridium perfringens str. 13 hypothetical protein NP_560974.1 69399 D 195102 CDS NP_560975.1 18309041 988286 70590..71528 1 NC_003366.1 C-terminal portion is similar to gpu:AP001509_23 ribosomal-protein (S5)-alanine N-acetyltransferase from Bacillus halodurans (182 aa); 39% identity in 164 aa overlap; GNAT family acetyltransferase 71528 988286 CPE0059 Clostridium perfringens str. 13 GNAT family acetyltransferase NP_560975.1 70590 D 195102 CDS NP_560976.1 18309042 988287 71545..72231 1 NC_003366.1 similar to pir:B56168 deoxyguanosine kinase (EC 2.7.1.113) from Lactobacillus acidophilus (224 aa); 44.2% identity in 199 aa overlap; deoxyguanosine kinase 72231 dgk2 988287 dgk2 Clostridium perfringens str. 13 deoxyguanosine kinase NP_560976.1 71545 D 195102 CDS NP_560977.1 18309043 988294 78534..79856 1 NC_003366.1 similar to pir:T35220 probable integral membrane transport protein from Streptomyces coelicolor (474 aa); 28.8% identity in 427 aa overlap; integral membrane transport protein 79856 988294 CPE0061 Clostridium perfringens str. 13 integral membrane transport protein NP_560977.1 78534 D 195102 CDS NP_560978.1 18309044 988295 79983..80132 1 NC_003366.1 no significant homology.; hypothetical protein 80132 988295 CPE0062 Clostridium perfringens str. 13 hypothetical protein NP_560978.1 79983 D 195102 CDS NP_560979.1 18309045 988296 80480..82504 1 NC_003366.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 82504 glgB 988296 glgB Clostridium perfringens str. 13 glycogen branching protein NP_560979.1 80480 D 195102 CDS NP_560980.1 18309046 988297 82532..83980 1 NC_003366.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 83980 glgA 988297 glgA Clostridium perfringens str. 13 glycogen synthase NP_560980.1 82532 D 195102 CDS NP_560981.1 18309047 988298 84010..86445 1 NC_003366.1 similar to gpu:AP001510_259 glycogen phosphorylase from Bacillus halodurans (815 aa); 53.9% identity in 801 aa overlap; glycogen phosphorylase 86445 glgP 988298 glgP Clostridium perfringens str. 13 glycogen phosphorylase NP_560981.1 84010 D 195102 CDS NP_560982.1 18309048 988299 86541..88361 1 NC_003366.1 similar to prf:2008115A amylopullulanase from Thermoanaerobacterium saccharolyticum (1288 aa); 39.2% identity in 587 aa overlap; amylopullulanase 88361 988299 CPE0066 Clostridium perfringens str. 13 amylopullulanase NP_560982.1 86541 D 195102 CDS NP_560983.1 18309049 988300 88416..88859 1 NC_003366.1 no significant homology.; hypothetical protein 88859 988300 CPE0067 Clostridium perfringens str. 13 hypothetical protein NP_560983.1 88416 D 195102 CDS NP_560984.1 18309050 988301 89069..90250 1 NC_003366.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 90250 glgC 988301 glgC Clostridium perfringens str. 13 glucose-1-phosphate adenylyltransferase NP_560984.1 89069 D 195102 CDS NP_560985.1 18309051 988302 90280..91386 1 NC_003366.1 similar to gpu:AP001510_261 required for glycogen biosynthesis from Bacillus halodurans (368 aa); 41.2% identity in 364 aa overlap; glycogen biosynthesis protein 91386 glgD 988302 glgD Clostridium perfringens str. 13 glycogen biosynthesis protein NP_560985.1 90280 D 195102 CDS NP_560986.1 18309052 988303 91449..91895 1 NC_003366.1 similar to gpu:AP001519_222 acetobutylicum phosphotransbutyrylase from Bacillus halodurans (146 aa); 43% identity in 135 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; phosphotransbutyrylase 91895 988303 CPE0070 Clostridium perfringens str. 13 phosphotransbutyrylase NP_560986.1 91449 D 195102 CDS NP_560987.1 18309053 988304 complement(92062..93504) 1 NC_003366.1 similar to sp:CLS2_BACSU PROBABLE CARDIOLIPIN SYNTHETASE 2 (EC 2.7.8.-) (CARDIOLIPIN SYNTHASE 2) (CL SYNTHASE 2) from Bacillus subtilis (482 aa); 39.4% identity in 454 aa overlap. ATT start. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; cardiolipin synthase 93504 clsA 988304 clsA Clostridium perfringens str. 13 cardiolipin synthase NP_560987.1 92062 R 195102 CDS NP_560988.1 18309054 988305 93936..95492 1 NC_003366.1 similar to gpu:AP001513_25 BH1752 gene product from Bacillus halodurans (514 aa); 47.8% identity in 508 aa overlap. 11 transmembrane regions were found by PSORT.; hypothetical protein 95492 988305 CPE0072 Clostridium perfringens str. 13 hypothetical protein NP_560988.1 93936 D 195102 CDS NP_560989.1 18309055 988310 101425..102009 1 NC_003366.1 similar to pir|D69632 transcription antiterminator glcT from Bacillus subtilis (285 aa); 35.5% identity in 169 aa overlap. Probably truncated by frameshift mutation; transcription antiterminator 102009 988310 CPE0073 Clostridium perfringens str. 13 transcription antiterminator NP_560989.1 101425 D 195102 CDS NP_560990.1 18309056 988311 101897..102274 1 NC_003366.1 similar to gb|AAB38977.1| (U34873) transcription antiterminator from Bacillus stearothermophilus (277 aa); 31.9% identity in 119 aa overlap. Probably truncated by frameshift mutation; transcription antiterminator 102274 988311 CPE0074 Clostridium perfringens str. 13 transcription antiterminator NP_560990.1 101897 D 195102 CDS NP_560991.1 18309057 988312 complement(102497..102754) 1 NC_003366.1 no significant homology.; hypothetical protein 102754 988312 CPE0075 Clostridium perfringens str. 13 hypothetical protein NP_560991.1 102497 R 195102 CDS NP_560992.1 18309058 988313 103447..104664 1 NC_003366.1 similar to N-terminal of sp:PTAA_KLEPN PTS SYSTEM, N-ACETYLGLUCOSAMINE-SPECIFIC IIABC COMPONENT (EIIABC-NAG) (N-ACETYLGLUCOSAMINE-PERMEASE IIABC COMPONENT) (PHOSPHOTRANSFERASE ENZYME II, ABC COMPONENT) (EC 2.7.1.69) (EII-NAG) from Klebsiella pneumoniae (651 aa); 46.7% identity in 366 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; PTS system N-acetylglucosamine-specific transporter subunit IIBC 104664 988313 CPE0076 Clostridium perfringens str. 13 PTS system N-acetylglucosamine-specific transporter subunit IIBC NP_560992.1 103447 D 195102 CDS NP_560993.1 18309059 988314 104712..104897 1 NC_003366.1 no significant homology.; hypothetical protein 104897 988314 CPE0077 Clostridium perfringens str. 13 hypothetical protein NP_560993.1 104712 D 195102 CDS NP_560994.1 18309060 988315 complement(104966..105484) 1 NC_003366.1 similar to sp:YHGD_BACSU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN HEMY-GLTT INTERGENIC REGION (ORFA) from Bacillus subtilis (191 aa); 30.2% identity in 126 aa overlap; TetR/AcrR family; TetR family transcriptional regulator 105484 988315 CPE0078 Clostridium perfringens str. 13 TetR family transcriptional regulator NP_560994.1 104966 R 195102 CDS NP_560995.1 18309061 988320 111585..113675 1 NC_003366.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 113675 fus 988320 fus Clostridium perfringens str. 13 elongation factor G NP_560995.1 111585 D 195102 CDS NP_560996.1 18309062 988321 114098..114334 1 NC_003366.1 no significant homology.; hypothetical protein 114334 988321 CPE0080 Clostridium perfringens str. 13 hypothetical protein NP_560996.1 114098 D 195102 CDS NP_560997.1 18309063 988322 114586..115533 1 NC_003366.1 similar to sp:GLK_BACSU GLUCOKINASE (EC 2.7.1.2) (GLUCOSE KINASE) from Bacillus subtilis (321 aa); 34.7% identity in 297 aa overlap. 1 transmembrane region was found by PSORT; glucose kinase 115533 glcK 988322 glcK Clostridium perfringens str. 13 glucose kinase NP_560997.1 114586 D 195102 CDS NP_560998.1 18309064 988323 116074..116616 1 NC_003366.1 similar to sp:Y746_METJA HYPOTHETICAL PROTEIN MJ0746 from Methanococcus jannaschii (141 aa); 44.8% identity in 143 aa overlap; hypothetical protein 116616 988323 CPE0082 Clostridium perfringens str. 13 hypothetical protein NP_560998.1 116074 D 195102 CDS NP_560999.1 18309065 988324 116949..117572 1 NC_003366.1 similar to pir:A70471 phosphoglycerate mutase 1 from Aquifex aeolicus (212 aa); 30% identity in 200 aa overlap. (EC 5.4.2.1); phosphoglycerate mutase 117572 gpmA 988324 gpmA Clostridium perfringens str. 13 phosphoglycerate mutase NP_560999.1 116949 D 195102 CDS NP_561000.1 18309066 988325 complement(117931..118701) 1 NC_003366.1 similar to sp:IOLR_BACSU DNA-BINDING PROTEIN IOLR from Bacillus subtilis (251 aa); 44.4% identity in 250 aa overlap; transcription repressor of myo-inositol catabolism operon 118701 iolR 988325 iolR Clostridium perfringens str. 13 transcription repressor of myo-inositol catabolism operon NP_561000.1 117931 R 195102 CDS NP_561001.1 18309067 988326 119183..120337 1 NC_003366.1 similar to pir:A42952 methanol dehydrogenase (EC 1.1.1.244) from Bacillus sp. (381 aa); 35.4% identity in 381 aa overlap; alcohol dehydrogenase 120337 mdh 988326 mdh Clostridium perfringens str. 13 alcohol dehydrogenase NP_561001.1 119183 D 195102 CDS NP_561002.1 18309068 988327 120344..121189 1 NC_003366.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 121189 alf1 988327 alf1 Clostridium perfringens str. 13 fructose-bisphosphate aldolase NP_561002.1 120344 D 195102 CDS NP_561003.1 18309069 988328 121203..122219 1 NC_003366.1 similar to sp:IOLC_BACSU IOLC PROTEIN from Bacillus subtilis (325 aa); 46.5% identity in 318 aa overlap; myo-inositol catabolism protein 122219 iolC 988328 iolC Clostridium perfringens str. 13 myo-inositol catabolism protein NP_561003.1 121203 D 195102 CDS NP_561004.1 18309070 988329 122233..123000 1 NC_003366.1 similar to sp:IOLB_BACSU IOLB PROTEIN from Bacillus subtilis (271 aa); 24.6% identity in 244 aa overlap; myo-inositol catabolism protein 123000 iolB 988329 iolB Clostridium perfringens str. 13 myo-inositol catabolism protein NP_561004.1 122233 D 195102 CDS NP_561005.1 18309071 988330 123017..124936 1 NC_003366.1 similar to sp:IOLD_BACSU PROBABLE MALONIC SEMIALDEHYDE OXIDATIVE DECARBOXYLASE (EC 1.-.-.-) from Bacillus subtilis (580 aa); 53.8% identity in 586 aa overlap. 1 transmembrane region was found by PSORT; myo-inositol catabolism protein 124936 iolD 988330 iolD Clostridium perfringens str. 13 myo-inositol catabolism protein NP_561005.1 123017 D 195102 CDS NP_561006.1 18309072 988331 125006..126013 1 NC_003366.1 similar to sp:YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN CSBX-NADA INTERGENIC REGION (ORF1) from Bacillus subtilis (341 aa); 49.1% identity in 318 aa overlap; dehydrogenase 126013 988331 CPE0090 Clostridium perfringens str. 13 dehydrogenase NP_561006.1 125006 D 195102 CDS NP_561007.1 18309073 988332 126132..127025 1 NC_003366.1 similar to sp:IOLE_BACSU IOLE PROTEIN from Bacillus subtilis (297 aa); 44.6% identity in 294 aa overlap; myo-inositol catabolism protein 127025 iolE 988332 iolE Clostridium perfringens str. 13 myo-inositol catabolism protein NP_561007.1 126132 D 195102 CDS NP_561008.1 18309074 988333 127107..128696 1 NC_003366.1 uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; symporter YidK 128696 988333 CPE0092 Clostridium perfringens str. 13 symporter YidK NP_561008.1 127107 D 195102 CDS NP_561009.1 18309075 988334 128783..129832 1 NC_003366.1 similar to gpu:AP001514_226 dehydrogenase from Bacillus halodurans (345 aa); 62.5% identity in 339 aa overlap; dehydrogenase 129832 988334 CPE0093 Clostridium perfringens str. 13 dehydrogenase NP_561009.1 128783 D 195102 CDS NP_561010.1 18309076 988335 130202..130960 1 NC_003366.1 similar to sp:YWCJ_BACSU HYPOTHETICAL 28.4 KDA PROTEIN IN SACT-SACP INTERGENIC REGION from Bacillus subtilis (256 aa); 35.1% identity in 242 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein 130960 988335 CPE0094 Clostridium perfringens str. 13 hypothetical protein NP_561010.1 130202 D 195102 CDS NP_561011.1 18309077 988336 131191..131967 1 NC_003366.1 similar to gp:TTBCSOPRN_1 crotonase from Thermoanaerobacterium thermosaccharolyticum (259 aa); 58.9% identity in 253 aa overlap. (EC 4.2.1.55); 3-hydroxybutyryl-CoA dehydratase; crotonase 131967 988336 CPE0095 Clostridium perfringens str. 13 crotonase NP_561011.1 131191 D 195102 CDS NP_561012.1 18309078 988337 132070..133620 1 NC_003366.1 similar to gp:CPR276553_2 propionate CoA-transferase from Clostridium propionicum (524 aa); 56.6% identity in 516 aa overlap. 1 transmembrane region was found by PSORT; propionate CoA-transferase 133620 988337 CPE0096 Clostridium perfringens str. 13 propionate CoA-transferase NP_561012.1 132070 D 195102 CDS NP_561013.1 18309079 988338 133724..134860 1 NC_003366.1 similar to sp:ACDS_CLOAB ACYL-COA DEHYDROGENASE, SHORT-CHAIN SPECIFIC (EC 1.3.99.2) (SCAD) (BUTYRYL-COA DEHYDROGENASE) from Clostridium acetobutylicum (379 aa); 58.5% identity in 378 aa overlap. 1 transmembrane region was found by PSORT; acyl-CoA dehydrogenase 134860 acdS 988338 acdS Clostridium perfringens str. 13 acyl-CoA dehydrogenase NP_561013.1 133724 D 195102 CDS NP_561014.1 18309080 988339 complement(135262..135612) 1 NC_003366.1 similar to pir:A69364 hypothetical protein AF0913 from Archaeoglobus fulgidus (112 aa); 43.1% identity in 116 aa overlap; hypothetical protein 135612 988339 CPE0098 Clostridium perfringens str. 13 hypothetical protein NP_561014.1 135262 R 195102 CDS NP_561015.1 18309081 988340 136190..137320 1 NC_003366.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 137320 gldA 988340 gldA Clostridium perfringens str. 13 glycerol dehydrogenase NP_561015.1 136190 D 195102 CDS NP_561016.1 18309082 988341 137346..139094 1 NC_003366.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone; dihydroxyacetone kinase 139094 988341 CPE0100 Clostridium perfringens str. 13 dihydroxyacetone kinase NP_561016.1 137346 D 195102 CDS NP_561017.1 18309083 988342 139454..140887 1 NC_003366.1 similar to pir:B69532 multidrug resistance protein homolog from Archaeoglobus fulgidus (503 aa); 30.2% identity in 424 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; multidrug resistance protein 140887 988342 CPE0101 Clostridium perfringens str. 13 multidrug resistance protein NP_561017.1 139454 D 195102 CDS NP_561018.1 18309084 988343 141164..141436 1 NC_003366.1 no significant homology.; hypothetical protein 141436 988343 CPE0102 Clostridium perfringens str. 13 hypothetical protein NP_561018.1 141164 D 195102 CDS NP_561019.1 18309085 988344 complement(141837..142790) 1 NC_003366.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH; L-lactate dehydrogenase 142790 ldh 988344 ldh Clostridium perfringens str. 13 L-lactate dehydrogenase NP_561019.1 141837 R 195102 CDS NP_561020.1 18309086 988345 143416..144591 1 NC_003366.1 no significant homology. 5 transmembrane regions were found by PSORT.; hypothetical protein 144591 988345 CPE0104 Clostridium perfringens str. 13 hypothetical protein NP_561020.1 143416 D 195102 CDS NP_561021.1 18309087 988346 144710..145147 1 NC_003366.1 no significant homology.; hypothetical protein 145147 988346 CPE0105 Clostridium perfringens str. 13 hypothetical protein NP_561021.1 144710 D 195102 CDS NP_561022.1 18309088 988347 145358..146098 1 NC_003366.1 partially similar to pir:S32215 hypothetical protein 1 from Bacillus megaterium (226 aa); 29.9% identity in 67 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 146098 988347 CPE0106 Clostridium perfringens str. 13 hypothetical protein NP_561022.1 145358 D 195102 CDS NP_561023.1 18309089 988348 146210..147082 1 NC_003366.1 partially similar to pir:S32215 hypothetical protein 1 from Bacillus megaterium (226 aa); 28% identity in 100 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein 147082 988348 CPE0107 Clostridium perfringens str. 13 hypothetical protein NP_561023.1 146210 D 195102 CDS NP_561024.1 18309090 988349 complement(147218..148582) 1 NC_003366.1 similar to gp:CTH275974_4 GTP-binding protein from Clostridium thermocellum (400 aa); 39% identity in 433 aa overlap; GTP-binding protein 148582 988349 CPE0108 Clostridium perfringens str. 13 GTP-binding protein NP_561024.1 147218 R 195102 CDS NP_561025.1 18309091 988350 complement(149310..149594) 1 NC_003366.1 no significant homology.; hypothetical protein 149594 988350 CPE0109 Clostridium perfringens str. 13 hypothetical protein NP_561025.1 149310 R 195102 CDS NP_561026.1 18309092 988351 complement(150273..151694) 1 NC_003366.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH 151694 thiH 988351 thiH Clostridium perfringens str. 13 thiamine biosynthesis protein ThiH NP_561026.1 150273 R 195102 CDS NP_561027.1 18309093 988352 complement(151800..152051) 1 NC_003366.1 similar to pir:A72274 hypothetical protein from Thermotoga maritima (strain MSB8) (82 aa); 34.7% identity in 75 aa overlap; hypothetical protein 152051 988352 CPE0111 Clostridium perfringens str. 13 hypothetical protein NP_561027.1 151800 R 195102 CDS NP_561028.1 18309094 988353 152495..154060 1 NC_003366.1 N-terminal portion is similar to sp:YPUA_BACSU HYPOTHETICAL 31.3 KDA PROTEIN IN LYSA-PPIB INTERGENIC REGION (ORFX19) from Bacillus subtilis (290 aa); 32.2% identity in 273 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 154060 988353 CPE0112 Clostridium perfringens str. 13 hypothetical protein NP_561028.1 152495 D 195102 CDS NP_561029.1 18309095 988354 154209..154436 1 NC_003366.1 no significant homology.; hypothetical protein 154436 988354 CPE0113 Clostridium perfringens str. 13 hypothetical protein NP_561029.1 154209 D 195102 CDS NP_561030.1 18309096 988355 154720..154944 1 NC_003366.1 no significant homology.; hypothetical protein 154944 988355 CPE0114 Clostridium perfringens str. 13 hypothetical protein NP_561030.1 154720 D 195102 CDS NP_561031.1 18309097 988356 complement(155002..155943) 1 NC_003366.1 similar to gp:SCC53_4 secreted protein from Streptomyces coelicolor A3(2) (336 aa); 33.7% identity in 199 aa overlap; N-acetylmuramoyl-L-alanine amidase 155943 988356 CPE0115 Clostridium perfringens str. 13 N-acetylmuramoyl-L-alanine amidase NP_561031.1 155002 R 195102 CDS NP_561032.1 18309098 988357 complement(155956..157116) 1 NC_003366.1 no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 157116 988357 CPE0116 Clostridium perfringens str. 13 hypothetical protein NP_561032.1 155956 R 195102 CDS NP_561033.1 18309099 988358 complement(157128..158378) 1 NC_003366.1 similar to pir:A70030 hypothetical protein yvbJ from Bacillus subtilis (605 aa); 25% identity in 172 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 158378 988358 CPE0117 Clostridium perfringens str. 13 hypothetical protein NP_561033.1 157128 R 195102 CDS NP_561034.1 18309100 988359 158494..159294 1 NC_003366.1 no significant homology. 4 transmembrane regions were found by PSORT.; hypothetical protein 159294 988359 CPE0118 Clostridium perfringens str. 13 hypothetical protein NP_561034.1 158494 D 195102 CDS NP_561035.1 18309101 988360 159434..160114 1 NC_003366.1 similar to gp:AF036964_1 response regulator from Lactobacillus sakei (224 aa); 49.3% identity in 203 aa overlap; two-component response regulator 160114 988360 CPE0119 Clostridium perfringens str. 13 two-component response regulator NP_561035.1 159434 D 195102 CDS NP_561036.1 18309102 988361 160111..161124 1 NC_003366.1 similar to gp:AF036964_2 histidine kinase from Lactobacillus sakei (339 aa); 38.2% identity in 178 aa overlap. 1 transmembrane region was found by PSORT; two-component sensor histidine kinase 161124 988361 CPE0120 Clostridium perfringens str. 13 two-component sensor histidine kinase NP_561036.1 160111 D 195102 CDS NP_561037.1 18309103 988362 161176..161373 1 NC_003366.1 no significant homology.; hypothetical protein 161373 988362 CPE0121 Clostridium perfringens str. 13 hypothetical protein NP_561037.1 161176 D 195102 CDS NP_561038.1 18309104 988363 161923..162693 1 NC_003366.1 similar to gpu:AP001508_9 ABC transporter (ATP-binding protein) from Bacillus halodurans (259 aa); 52% identity in 252 aa overlap; ATP-binding protein; ABC transporter 162693 988363 CPE0122 Clostridium perfringens str. 13 ABC transporter NP_561038.1 161923 D 195102 CDS NP_561039.1 18309105 988364 162683..164662 1 NC_003366.1 similar to pir:G70032 ABC transporter (permease) homolog yvcS from Bacillus subtilis (646 aa); 24.1% identity in 602 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; permease; ABC transporter 164662 988364 CPE0123 Clostridium perfringens str. 13 ABC transporter NP_561039.1 162683 D 195102 CDS NP_561040.1 18309106 988365 complement(164831..165400) 1 NC_003366.1 no significant homology. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 165400 988365 CPE0124 Clostridium perfringens str. 13 hypothetical protein NP_561040.1 164831 R 195102 CDS NP_561041.1 18309107 988366 165492..165704 1 NC_003366.1 similar to pir:F69799 hypothetical protein yezA from Bacillus subtilis (68 aa); 37.9% identity in 66 aa overlap; hypothetical protein 165704 988366 CPE0125 Clostridium perfringens str. 13 hypothetical protein NP_561041.1 165492 D 195102 CDS NP_561042.1 18309108 988367 165999..166325 1 NC_003366.1 no significant homology.; hypothetical protein 166325 988367 CPE0126 Clostridium perfringens str. 13 hypothetical protein NP_561042.1 165999 D 195102 CDS NP_561043.1 18309109 988368 166569..166763 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 166763 988368 CPE0127 Clostridium perfringens str. 13 hypothetical protein NP_561043.1 166569 D 195102 CDS NP_561044.1 18309110 988369 166956..167585 1 NC_003366.1 similar to gpu:AE004302_6 conserved hypothetical protein from Vibrio cholerae (322 aa); 28.8% identity in 240 aa overlap. ATT start. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 167585 988369 CPE0128 Clostridium perfringens str. 13 hypothetical protein NP_561044.1 166956 D 195102 CDS NP_561045.1 18309111 988370 168100..169119 1 NC_003366.1 similar to sp:YEIH_HAEIN HYPOTHETICAL PROTEIN HI1643 from Haemophilus influenzae (338 aa); 28% identity in 314 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 169119 988370 CPE0129 Clostridium perfringens str. 13 hypothetical protein NP_561045.1 168100 D 195102 CDS NP_561046.1 18309112 988371 169320..169472 1 NC_003366.1 no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 169472 988371 CPE0130 Clostridium perfringens str. 13 hypothetical protein NP_561046.1 169320 D 195102 CDS NP_561047.1 18309113 988372 complement(169828..170721) 1 NC_003366.1 similar to pir:B71256 conserved hypothetical integral membrane protein TP0986 from Treponema pallidum (294 aa); 33.7% identity in 270 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein 170721 988372 CPE0131 Clostridium perfringens str. 13 hypothetical protein NP_561047.1 169828 R 195102 CDS NP_561048.1 18309114 988373 171050..172288 1 NC_003366.1 similar to sp:CINA_BACSU COMPETENCE-DAMAGE PROTEIN from Bacillus subtilis (416 aa); 43.1% identity in 394 aa overlap; competence damage-inducible protein A 172288 cinA 988373 cinA Clostridium perfringens str. 13 competence damage-inducible protein A NP_561048.1 171050 D 195102 CDS NP_561049.1 18309115 988374 172988..173914 1 NC_003366.1 similar to pir:S75835 hypothetical protein slr1288 from Synechocystis sp. (strain PCC 6803) (194 aa); 30.2% identity in 126 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; CAAX amino terminal protease 173914 988374 CPE0133 Clostridium perfringens str. 13 CAAX amino terminal protease NP_561049.1 172988 D 195102 CDS NP_561050.1 18309116 988375 174180..174389 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 174389 988375 CPE0134 Clostridium perfringens str. 13 hypothetical protein NP_561050.1 174180 D 195102 CDS NP_561051.1 18309117 988376 174742..175329 1 NC_003366.1 similar to sp:RUBY_CLOPE RUBRERYTHRIN from Clostridium perfringens (195 aa); 99% identity in 195 aa overlap; rubrerythrin 175329 rubY 988376 rubY Clostridium perfringens str. 13 rubrerythrin NP_561051.1 174742 D 195102 CDS NP_561052.1 18309118 988377 complement(175492..176037) 1 NC_003366.1 similar to sp:Y099_PYRHO HYPOTHETICAL PROTEIN PH0099 from Pyrococcus horikoshii (184 aa); 31.3% identity in 96 aa overlap; hypothetical protein 176037 988377 CPE0136 Clostridium perfringens str. 13 hypothetical protein NP_561052.1 175492 R 195102 CDS NP_561053.1 18309119 988378 176893..178449 1 NC_003366.1 similar to pir:D69813 ABC transporter (ATP-binding protein) homolog yfmM from Bacillus subtilis (518 aa); 72.9% identity in 517 aa overlap; ATP-binding protein; ABC transporter 178449 988378 CPE0137 Clostridium perfringens str. 13 ABC transporter NP_561053.1 176893 D 195102 CDS NP_561054.1 18309120 988379 178710..179510 1 NC_003366.1 similar to C-terminal of prf:2220313B ORF 3 - Lactococcal bacteriophage TP901-1 from Bacteriophage TP901-1 (181 aa); 39.5% identity in 167 aa overlap; hypothetical protein 179510 988379 CPE0138 Clostridium perfringens str. 13 hypothetical protein NP_561054.1 178710 D 195102 CDS NP_561055.1 18309121 988380 179861..180331 1 NC_003366.1 similar to gp:AF125554_2 transposase from Enterococcus faecium (156 aa); 72.4% identity in 156 aa overlap; transposase 180331 988380 CPE0139 Clostridium perfringens str. 13 transposase NP_561055.1 179861 D 195102 CDS NP_561056.1 18309122 988381 180609..182378 1 NC_003366.1 similar to prf:2303403A ORF 1 from Salmonella enterica (618 aa); 28% identity in 558 aa overlap; hypothetical protein 182378 988381 CPE0140 Clostridium perfringens str. 13 hypothetical protein NP_561056.1 180609 D 195102 CDS NP_561057.1 18309123 988382 complement(182398..182559) 1 NC_003366.1 no significant homology.; hypothetical protein 182559 988382 CPE0141 Clostridium perfringens str. 13 hypothetical protein NP_561057.1 182398 R 195102 CDS NP_561058.1 18309124 988383 182670..182885 1 NC_003366.1 similar to N-terminal of prf:2416406A ORF A from Lactobacillus casei phage A2 (160 aa); 32.1% identity in 53 aa overlap; hypothetical protein 182885 988383 CPE0142 Clostridium perfringens str. 13 hypothetical protein NP_561058.1 182670 D 195102 CDS NP_561059.1 18309125 988384 182876..183235 1 NC_003366.1 similar to N-terminal of gp:AF162221_131 ORF131 from Xestia c-nigrum granulovirus (442 aa); 40% identity in 75 aa overlap. ATT start; hypothetical protein 183235 988384 CPE0143 Clostridium perfringens str. 13 hypothetical protein NP_561059.1 182876 D 195102 CDS NP_561060.1 18309126 988385 183767..184318 1 NC_003366.1 in yeast cells this enzyme removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate; functions in tRNA splicing; the function and substrate of bacterial enzymes in organisms that do not perform splicing is unknown; RNA 2'-phosphotransferase-like protein 184318 988385 CPE0144 Clostridium perfringens str. 13 RNA 2'-phosphotransferase-like protein NP_561060.1 183767 D 195102 CDS NP_561061.1 18309127 988386 184608..185453 1 NC_003366.1 no significant homology.; hypothetical protein 185453 988386 CPE0145 Clostridium perfringens str. 13 hypothetical protein NP_561061.1 184608 D 195102 CDS NP_561062.1 18309128 988387 185482..186507 1 NC_003366.1 similar to pir:G72422 2-keto-3-deoxygluconate kinase from Thermotoga maritima (strain MSB8) (339 aa); 38.2% identity in 322 aa overlap; 2-keto-3-deoxygluconate kinase 186507 988387 CPE0146 Clostridium perfringens str. 13 2-keto-3-deoxygluconate kinase NP_561062.1 185482 D 195102 CDS NP_561063.1 18309129 988388 186571..188370 1 NC_003366.1 similar to sp:BGLR_ECOLI BETA-GLUCURONIDASE (EC 3.2.1.31) (GUS) (BETA-D-GLUCURONOSIDE GLUCURONOSOHYDROLASE) from Escherichia coli (603 aa); 48.3% identity in 598 aa overlap; beta-D-glucuronidase 188370 bglR 988388 bglR Clostridium perfringens str. 13 beta-D-glucuronidase NP_561063.1 186571 D 195102 CDS NP_561064.1 18309130 988389 188513..189202 1 NC_003366.1 similar to prf:2514353L regulatory protein from Bacillus stearothermophilus (249 aa); 36.5% identity in 208 aa overlap; GntR family; transcriptional regulator 189202 988389 CPE0148 Clostridium perfringens str. 13 transcriptional regulator NP_561064.1 188513 D 195102 CDS NP_561065.1 18309131 988390 189392..190243 1 NC_003366.1 Converts D-mannonate to D-mannuronate; D-mannonate oxidoreductase 190243 988390 CPE0149 Clostridium perfringens str. 13 D-mannonate oxidoreductase NP_561065.1 189392 D 195102 CDS NP_561066.1 18309132 988391 190258..190866 1 NC_003366.1 similar to pir:F72422 KHG-KDPG bifunctional aldolase TM0066 from Thermotoga maritima (strain MSB8) (205 aa); 46.7% identity in 197 aa overlap. N-terminal signal sequence was found by PSORT; 2-dehydro-3-deoxyphosphogluconate aldolase 190866 988391 CPE0150 Clostridium perfringens str. 13 2-dehydro-3-deoxyphosphogluconate aldolase NP_561066.1 190258 D 195102 CDS NP_561067.1 18309133 988392 190957..192009 1 NC_003366.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 192009 uxuA 988392 uxuA Clostridium perfringens str. 13 mannonate dehydratase NP_561067.1 190957 D 195102 CDS NP_561068.1 18309134 988393 192029..193429 1 NC_003366.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 193429 uxaC 988393 uxaC Clostridium perfringens str. 13 glucuronate isomerase NP_561068.1 192029 D 195102 CDS NP_561069.1 18309135 988394 193550..194941 1 NC_003366.1 similar to sp:UIDB_ECOLI GLUCURONIDE CARRIER PROTEIN (GLUCURONIDE PERMEASE) from Escherichia coli (457 aa); 30.5% identity in 442 aa overlap. 9 transmembrane regions were found by PSORT.; glucuronide permease 194941 uidB 988394 uidB Clostridium perfringens str. 13 glucuronide permease NP_561069.1 193550 D 195102 CDS NP_561070.1 18309136 988395 195005..196774 1 NC_003366.1 similar to gp:AP001509_113 beta-hexosamidase A precursor from Bacillus halodurans (686 aa); 29% identity in 412 aa overlap; beta-hexosamidase A 196774 988395 CPE0154 Clostridium perfringens str. 13 beta-hexosamidase A NP_561070.1 195005 D 195102 CDS NP_561071.1 18309137 988396 197405..199576 1 NC_003366.1 partially similar to gpu:AP001508_84 BH0361 gene product from Bacillus halodurans (1661 aa); 26.4% identity in 273 aa overlap.Also some similarity to sp:CNA_STAAU COLLAGEN ADHESIN PRECURSOR from Staphylococcus aureus. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 199576 988396 CPE0155 Clostridium perfringens str. 13 hypothetical protein NP_561071.1 197405 D 195102 CDS NP_561072.1 18309138 988397 199580..201148 1 NC_003366.1 similar to sp:TEE6_STRPY TRYPSIN-RESISTANT SURFACE T6 PROTEIN PRECURSOR from Streptococcus pyogenes (537 aa); 26.4% identity in 455 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; surface protein 201148 988397 CPE0156 Clostridium perfringens str. 13 surface protein NP_561072.1 199580 D 195102 CDS NP_561073.1 18309139 988398 201393..202148 1 NC_003366.1 similar to gp:AF019629_2 fimbria-associated protein from Actinomyces naeslundii (365 aa); 39.5% identity in 205 aa overlap. 1 transmembrane region was found by PSORT; sortase 202148 988398 CPE0157 Clostridium perfringens str. 13 sortase NP_561073.1 201393 D 195102 CDS NP_561074.1 18309140 988399 202217..203128 1 NC_003366.1 partially similar to gpu:AP001512_149 BH1562 gene product from Bacillus halodurans (268 aa); 26.2% identity in 103 aa overlap; hypothetical protein 203128 988399 CPE0158 Clostridium perfringens str. 13 hypothetical protein NP_561074.1 202217 D 195102 CDS NP_561075.1 18309141 988400 203688..204281 1 NC_003366.1 similar to sp:YDJZ_ECOLI HYPOTHETICAL 26.2 KDA PROTEIN IN XTHA-GDHA INTERGENIC REGION from Escherichia coli (235 aa); 23% identity in 152 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 204281 988400 CPE0159 Clostridium perfringens str. 13 hypothetical protein NP_561075.1 203688 D 195102 CDS NP_561076.1 18309142 988401 204516..205067 1 NC_003366.1 similar to pir:T35433 hypothetical protein SC6A9.02 SC6A9.02 from Streptomyces coelicolor (213 aa); 45.2% identity in 177 aa overlap; hypothetical protein 205067 988401 CPE0160 Clostridium perfringens str. 13 hypothetical protein NP_561076.1 204516 D 195102 CDS NP_561077.1 18309143 988402 complement(205272..206738) 1 NC_003366.1 no significant homology.; hypothetical protein 206738 988402 CPE0161 Clostridium perfringens str. 13 hypothetical protein NP_561077.1 205272 R 195102 CDS NP_561078.1 18309144 988403 207408..208439 1 NC_003366.1 similar to pir:A43577 regulatory protein pfoR from Clostridium perfringens (343 aa); 88.7% identity in 327 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; regulatory protein 208439 pfoR 988403 pfoR Clostridium perfringens str. 13 regulatory protein NP_561078.1 207408 D 195102 CDS NP_561079.1 18309145 988404 209028..210530 1 NC_003366.1 similar to sp:TACY_CLOPE PERFRINGOLYSIN O PRECURSOR (THETA-TOXIN) (THIOL-ACTIVATED CYTOLYSIN) from Clostridium perfringens (500 aa); 99.8% identity in 500 aa overlap. N-terminal signal sequence was found by PSORT; perfringolysin O 210530 pfoA 988404 pfoA Clostridium perfringens str. 13 perfringolysin O NP_561079.1 209028 D 195102 CDS NP_561080.1 18309146 988405 210726..211184 1 NC_003366.1 similar to gp:CLOPBG_2 unknown from Clostridium perfringens (152 aa); 100% identity in 152 aa overlap; hypothetical protein 211184 988405 CPE0164 Clostridium perfringens str. 13 hypothetical protein NP_561080.1 210726 D 195102 CDS NP_561081.1 18309147 988406 211256..211423 1 NC_003366.1 similar to gp:CLOPBG_3 unknown from Clostridium perfringens (72 aa); 100% identity in 55 aa overlap; hypothetical protein 211423 988406 CPE0165 Clostridium perfringens str. 13 hypothetical protein NP_561081.1 211256 D 195102 CDS NP_561082.1 18309148 988407 212226..213713 1 NC_003366.1 similar to gp:CLOPBG_4 membrane-spanning transporter protein from Clostridium perfringens (495 aa); 94.9% identity in 495 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; membrane-spanning transporter protein 213713 988407 CPE0166 Clostridium perfringens str. 13 membrane-spanning transporter protein NP_561082.1 212226 D 195102 CDS NP_561083.1 18309149 988408 213872..215941 1 NC_003366.1 similar to gp:CLOPBG_5 beta-galactosidase from Clostridium perfringens (676 aa); 99.4% identity in 676 aa overlap; beta-galactosidase 215941 pbg 988408 pbg Clostridium perfringens str. 13 beta-galactosidase NP_561083.1 213872 D 195102 CDS NP_561084.1 18309150 988409 216493..217734 1 NC_003366.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 217734 arcA 988409 arcA Clostridium perfringens str. 13 arginine deiminase NP_561084.1 216493 D 195102 CDS NP_561085.1 18309151 988410 217842..218837 1 NC_003366.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 218837 arcB 988410 arcB Clostridium perfringens str. 13 ornithine carbamoyltransferase NP_561085.1 217842 D 195102 CDS NP_561086.1 18309152 988411 218982..220418 1 NC_003366.1 similar to sp:ARCD_CLOPE ARGININE/ORNITHINE ANTIPORTER from Clostridium perfringens (476 aa); 88.5% identity in 478 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; arginine/ornithine antiporter 220418 arcD 988411 arcD Clostridium perfringens str. 13 arginine/ornithine antiporter NP_561086.1 218982 D 195102 CDS NP_561087.1 18309153 988412 220479..221423 1 NC_003366.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 221423 arcC 988412 arcC Clostridium perfringens str. 13 carbamate kinase NP_561087.1 220479 D 195102 CDS NP_561088.1 18309154 988413 221496..221951 1 NC_003366.1 similar to sp:ARGR_CLOPE ARGININE REPRESSOR from Clostridium perfringens (145 aa); 91% identity in 144 aa overlap; arginine repressor ArgR 221951 argR 988413 argR Clostridium perfringens str. 13 arginine repressor ArgR NP_561088.1 221496 D 195102 CDS NP_561089.1 18309155 988414 222495..225809 1 NC_003366.1 similar to sp:COLA_CLOPE MICROBIAL COLLAGENASE PRECURSOR (EC 3.4.24.3) (120 KDA COLLAGENASE) from Clostridium perfringens (1104 aa); 98.1% identity in 1104 aa overlap. N-terminal signal sequence was found by PSORT; kappa-toxin; collagenase 225809 colA 988414 colA Clostridium perfringens str. 13 collagenase NP_561089.1 222495 D 195102 CDS NP_561090.1 18309156 988415 complement(225957..226415) 1 NC_003366.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 226415 mscL 988415 mscL Clostridium perfringens str. 13 large-conductance mechanosensitive channel NP_561090.1 225957 R 195102 CDS NP_561091.1 18309157 988416 227207..227782 1 NC_003366.1 similar to pir:A83577 probable transcription regulator PA0547 from Pseudomonas aeruginosa (344 aa); 33.6% identity in 134 aa overlap.Also similar to pir:E69758 hypothetical protein ycgJ from Bacillus subtilis. 1 transmembrane region was found by PSORT; UbiE/COQ5 family methyltransferase 227782 ycgJ 988416 ycgJ Clostridium perfringens str. 13 UbiE/COQ5 family methyltransferase NP_561091.1 227207 D 195102 CDS NP_561092.1 18309158 988417 227846..229000 1 NC_003366.1 similar to gp:AB028629_1 cystathionine beta-synthase from Clostridium perfringens (351 aa); 96.6% identity in 351 aa overlap. 1 transmembrane region was found by PSORT; cystathionine beta-lyase 229000 metB 988417 metB Clostridium perfringens str. 13 cystathionine beta-lyase NP_561092.1 227846 D 195102 CDS NP_561093.1 18309159 988418 228987..229895 1 NC_003366.1 similar to pir:T43792 cysteine synthase (EC 4.2.99.8) cysK from Clostridium perfringens (302 aa); 96.7% identity in 302 aa overlap. 1 transmembrane region was found by PSORT; cysteine synthase 229895 cysK 988418 cysK Clostridium perfringens str. 13 cysteine synthase NP_561093.1 228987 D 195102 CDS NP_561094.1 18309160 988419 229993..230448 1 NC_003366.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 230448 luxS 988419 luxS Clostridium perfringens str. 13 S-ribosylhomocysteinase NP_561094.1 229993 D 195102 CDS NP_561095.1 18309161 988420 231156..232166 1 NC_003366.1 similar to pir:T43794 probable lipase lipA from Clostridium perfringens (311 aa); 99.4% identity in 310 aa overlap. ATA start; lipase 232166 lipA 988420 lipA Clostridium perfringens str. 13 lipase NP_561095.1 231156 D 195102 CDS NP_561096.1 18309162 988421 complement(232388..233179) 1 NC_003366.1 similar to pir:H75377 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (262 aa); 28.5% identity in 263 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 233179 988421 CPE0180 Clostridium perfringens str. 13 hypothetical protein NP_561096.1 232388 R 195102 CDS NP_561097.1 18309163 988422 complement(233184..234002) 1 NC_003366.1 similar to pir:G75377 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (267 aa); 21.2% identity in 226 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein 234002 988422 CPE0181 Clostridium perfringens str. 13 hypothetical protein NP_561097.1 233184 R 195102 CDS NP_561098.1 18309164 988423 complement(234005..235030) 1 NC_003366.1 similar to gp:SCE6_29 ABC-transport protein, ATP-binding component from Streptomyces coelicolor A3(2) (354 aa); 50% identity in 258 aa overlap; ATP-binding protein; ABC transporter ATP-binding protein 235030 988423 CPE0182 Clostridium perfringens str. 13 ABC transporter ATP-binding protein NP_561098.1 234005 R 195102 CDS NP_561099.1 18309165 988424 235341..236009 1 NC_003366.1 similar to sp:YFKO_BACSU NAD(P)H NITROREDUCTASE YFKO (EC 1.-.-.-) from Bacillus subtilis (221 aa); 42.9% identity in 217 aa overlap; nitroreductase 236009 988424 CPE0183 Clostridium perfringens str. 13 nitroreductase NP_561099.1 235341 D 195102 CDS NP_561100.1 18309166 988425 236295..236960 1 NC_003366.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 236960 nanP 988425 nanP Clostridium perfringens str. 13 N-acetylmannosamine-6-phosphate 2-epimerase NP_561100.1 236295 D 195102 CDS NP_561101.1 18309167 988426 236997..237863 1 NC_003366.1 catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 237863 nanA 988426 nanA Clostridium perfringens str. 13 N-acetylneuraminate lyase NP_561101.1 236997 D 195102 CDS NP_561102.1 18309168 988427 237966..239483 1 NC_003366.1 similar to pir:S75887 hypothetical protein from Synechocystis sp. (strain PCC 6803 (512 aa); 31.5% identity in 428 aa overlap. N-terminal signal sequence and 12 transmembrane regions were found by PSORT.; hypothetical protein 239483 988427 CPE0186 Clostridium perfringens str. 13 hypothetical protein NP_561102.1 237966 D 195102 CDS NP_561103.1 18309169 988428 239593..240045 1 NC_003366.1 similar to pir:S56477 hypothetical 17.3K protein (pyrL-argI intergenic region) from Escherichia coli (153 aa); 32% identity in 153 aa overlap; hypothetical protein 240045 988428 CPE0187 Clostridium perfringens str. 13 hypothetical protein NP_561103.1 239593 D 195102 CDS NP_561104.1 18309170 988429 240201..241088 1 NC_003366.1 similar to pir:S43901 hypothetical protein A from Clostridium perfringens (182 aa); 90.4% identity in 177 aa overlap. Also similar to gp:AP001509_235 glucose kinase from Bacillus halodurans. 2 transmembrane regions were found by PSORT.; ROK family protein 241088 988429 CPE0188 Clostridium perfringens str. 13 ROK family protein NP_561104.1 240201 D 195102 CDS NP_561105.1 18309171 988430 241279..242118 1 NC_003366.1 similar to sp:YNGB_CLOPE HYPOTHETICAL 31.2 KDA PROTEIN IN NAGH 5'REGION (ORFB) from Clostridium perfringens (279 aa); 100% identity in 279 aa overlap; RpiR family transcriptional regulator 242118 988430 CPE0189 Clostridium perfringens str. 13 RpiR family transcriptional regulator NP_561105.1 241279 D 195102 CDS NP_561106.1 18309172 988431 complement(242319..242708) 1 NC_003366.1 similar to sp:YNGC_CLOPE HYPOTHETICAL 10.8 KDA PROTEIN IN NAGH 5'REGION (ORFC) from Clostridium perfringens (94 aa); 100% identity in 86 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 242708 988431 CPE0190 Clostridium perfringens str. 13 hypothetical protein NP_561106.1 242319 R 195102 CDS NP_561107.1 18309173 988432 242971..247857 1 NC_003366.1 similar to sp:NAGH_CLOPE HYALURONOGLUCOSAMINIDASE PRECURSOR (EC 3.2.1.35) (HYALURONIDASE) (MU TOXIN) from Clostridium perfringens (1042 aa); 97.5% identity in 1041 aa overlap. N-terminal signal sequence was found by PSORT; hyaluronidase 247857 nagH 988432 nagH Clostridium perfringens str. 13 hyaluronidase NP_561107.1 242971 D 195102 CDS NP_561108.2 161485644 988433 248808..249479 1 NC_003366.1 catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 249479 cbiM 988433 cbiM Clostridium perfringens str. 13 cobalt transport protein CbiM NP_561108.2 248808 D 195102 CDS NP_561109.1 18309175 988434 249479..249790 1 NC_003366.1 periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN 249790 cbiN 988434 cbiN Clostridium perfringens str. 13 cobalt transport protein CbiN NP_561109.1 249479 D 195102 CDS NP_561110.1 18309176 988435 249837..250544 1 NC_003366.1 similar to pir:H64435 cobalt transport protein Q homolog from Methanococcus jannaschii (268 aa); 34.2% identity in 225 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; cobalt ABC transporter permease 250544 cbiQ 988435 cbiQ Clostridium perfringens str. 13 cobalt ABC transporter permease NP_561110.1 249837 D 195102 CDS NP_561111.1 18309177 988436 250559..251416 1 NC_003366.1 with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 251416 cbiO 988436 cbiO Clostridium perfringens str. 13 cobalt transporter ATP-binding subunit NP_561111.1 250559 D 195102 CDS NP_561112.1 18309178 988437 251886..253466 1 NC_003366.1 similar to sp:PTIB_BACSU PTS SYSTEM, ARBUTIN-LIKE IIBC COMPONENT (PHOSPHOTRANSFERASE ENZYME II, BC COMPONENT) (EC 2.7.1.69) from Bacillus subtilis (527 aa); 60.7% identity in 527 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; PTS system arbutin-like transporter subunit IIBC 253466 ptiB 988437 ptiB Clostridium perfringens str. 13 PTS system arbutin-like transporter subunit IIBC NP_561112.1 251886 D 195102 CDS NP_561113.1 18309179 988438 253730..254500 1 NC_003366.1 similar to sp:YFIA_BACSU HYPOTHETICAL 29.3 KDA PROTEIN IN GLVG-GLVBC INTERGENIC REGION from Bacillus subtilis (254 aa); 40.2% identity in 254 aa overlap; hypothetical protein 254500 988438 CPE0197 Clostridium perfringens str. 13 hypothetical protein NP_561113.1 253730 D 195102 CDS NP_561114.1 18309180 988439 254724..255224 1 NC_003366.1 partially similar to sp:YFIA_BACSU HYPOTHETICAL 29.3 KDA PROTEIN IN GLVG-GLVBC INTERGENIC REGION from Bacillus subtilis (254 aa); 26.7% identity in 90 aa overlap; hypothetical protein 255224 988439 CPE0198 Clostridium perfringens str. 13 hypothetical protein NP_561114.1 254724 D 195102 CDS NP_561115.1 18309181 988440 255480..256805 1 NC_003366.1 similar to sp:MALH_FUSMR MALTOSE-6'-PHOSPHATE GLUCOSIDASE (EC 3.2.1.122) (6-PHOSPHO-ALPHA-D- GLUCOSIDASE) from Fusobacterium mortiferum (441 aa); 81.4% identity in 441 aa overlap; maltose-6'-phosphate glucosidase 256805 malH 988440 malH Clostridium perfringens str. 13 maltose-6'-phosphate glucosidase NP_561115.1 255480 D 195102 CDS NP_561116.1 18309182 988441 257386..257547 1 NC_003366.1 no significant homology.; hypothetical protein 257547 988441 CPE0200 Clostridium perfringens str. 13 hypothetical protein NP_561116.1 257386 D 195102 CDS NP_561117.1 18309183 988442 complement(257764..258627) 1 NC_003366.1 similar to gp:FMY12759_1 acid phosphatase from Chryseobacterium meningosepticum (267 aa); 42.3% identity in 234 aa overlap. N-terminal signal sequence was found by PSORT; 5'-nucleotidase 258627 988442 CPE0201 Clostridium perfringens str. 13 5'-nucleotidase NP_561117.1 257764 R 195102 CDS NP_561118.1 18309184 988443 complement(258849..260048) 1 NC_003366.1 similar to gpu:AP001519_115 cell wall-binding protein from Bacillus halodurans (461 aa); 32.4% identity in 336 aa overlap. N-terminal signal sequence was found by PSORT; cell wall-binding protein 260048 spoIIQ 988443 spoIIQ Clostridium perfringens str. 13 cell wall-binding protein NP_561118.1 258849 R 195102 CDS NP_561119.1 18309185 988444 260735..261391 1 NC_003366.1 partially similar to N-terminal of pir:G64667 NA+/H+ antiporter from Helicobacter pylori (strain 26695) (383 aa); 28% identity in 150 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 261391 988444 CPE0203 Clostridium perfringens str. 13 hypothetical protein NP_561119.1 260735 D 195102 CDS NP_561120.1 18309186 988449 267399..268028 1 NC_003366.1 similar to gp:AF125164_20 acetyltransferase from Bacteroides fragilis (194 aa); 30.7% identity in 101 aa overlap; acetyltransferase 268028 988449 CPE0204 Clostridium perfringens str. 13 acetyltransferase NP_561120.1 267399 D 195102 CDS NP_561121.1 18309187 988450 268495..268770 1 NC_003366.1 similar to pir:E70718 hypothetical protein Rv0967 from Mycobacterium tuberculosis (strain H37RV) (119 aa); 34.9% identity in 83 aa overlap; hypothetical protein 268770 988450 CPE0205 Clostridium perfringens str. 13 hypothetical protein NP_561121.1 268495 D 195102 CDS NP_561122.1 18309188 988451 270353..270934 1 NC_003366.1 no significant homology.; hypothetical protein 270934 988451 CPE0206 Clostridium perfringens str. 13 hypothetical protein NP_561122.1 270353 D 195102 CDS NP_561123.1 18309189 988452 complement(271073..273448) 1 NC_003366.1 similar to pir:C72228 sensor histidine kinase HpkA from Thermotoga maritima (strain MSB8) (412 aa); 28.4% identity in 349 aa overlap. 8 transmembrane regions were found by PSORT.; two-component sensor histidine kinase 273448 988452 CPE0207 Clostridium perfringens str. 13 two-component sensor histidine kinase NP_561123.1 271073 R 195102 CDS NP_561124.1 18309190 988453 273815..274873 1 NC_003366.1 similar to pir:S23349 hypothetical protein 17.4 from Salmonella choleraesuis (367 aa); 24.8% identity in 319 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; hypothetical protein 274873 988453 CPE0208 Clostridium perfringens str. 13 hypothetical protein NP_561124.1 273815 D 195102 CDS NP_561125.1 18309191 988454 274974..275201 1 NC_003366.1 no significant homology.; hypothetical protein 275201 988454 CPE0209 Clostridium perfringens str. 13 hypothetical protein NP_561125.1 274974 D 195102 CDS NP_561126.1 18309192 988455 275341..276222 1 NC_003366.1 no significant homology.; hypothetical protein 276222 988455 CPE0210 Clostridium perfringens str. 13 hypothetical protein NP_561126.1 275341 D 195102 CDS NP_561127.1 18309193 988456 276250..278448 1 NC_003366.1 partially similar to pir:F75103 probable purine NTPase PAB0812 from Pyrococcus abyssi (strain Orsay) (880 aa); 33.3% identity in 201 aa overlap; hypothetical protein 278448 988456 CPE0211 Clostridium perfringens str. 13 hypothetical protein NP_561127.1 276250 D 195102 CDS NP_561128.1 18309194 988457 278930..279700 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 279700 988457 CPE0212 Clostridium perfringens str. 13 hypothetical protein NP_561128.1 278930 D 195102 CDS NP_561129.1 18309195 988458 complement(279879..280694) 1 NC_003366.1 similar to gpu:AE004134_7 conserved hypothetical protein from Vibrio cholerae (287 aa); 34.2% identity in 263 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 280694 988458 CPE0213 Clostridium perfringens str. 13 hypothetical protein NP_561129.1 279879 R 195102 CDS NP_561130.1 18309196 988459 complement(281268..281912) 1 NC_003366.1 similar to sp:HO1_SYNY3 HEME OXYGENASE 1 (EC 1.14.99.3) from Synechocystis sp. (strain PCC 6803) (240 aa); 32.5% identity in 200 aa overlap; heme oxygenase 281912 988459 CPE0214 Clostridium perfringens str. 13 heme oxygenase NP_561130.1 281268 R 195102 CDS NP_561131.1 18309197 988460 282313..283536 1 NC_003366.1 similar to sp:SBCD_BACSU EXONUCLEASE SBCD HOMOLOG (FRAGMENT) from Bacillus subtilis (325 aa); 38.1% identity in 339 aa overlap; exonuclease 283536 sbcD 988460 sbcD Clostridium perfringens str. 13 exonuclease NP_561131.1 282313 D 195102 CDS NP_561132.1 18309198 988461 283514..287041 1 NC_003366.1 similar to >gp:CPSBCC_1 sbcC gene product from Clostridium perfringens (140 aa); 91.4% identity in 140 aa overlap; exonuclease SbcC 287041 sbcC 988461 sbcC Clostridium perfringens str. 13 exonuclease SbcC NP_561132.1 283514 D 195102 CDS NP_561133.1 18309199 988462 287446..288642 1 NC_003366.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 288642 ackA 988462 ackA Clostridium perfringens str. 13 acetate kinase NP_561133.1 287446 D 195102 CDS NP_561134.1 18309200 988463 289079..289900 1 NC_003366.1 similar to gpu:AE004132_1 DnaJ-related protein from Vibrio cholerae (284 aa); 27.9% identity in 208 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; DnaJ-like protein 289900 988463 CPE0218 Clostridium perfringens str. 13 DnaJ-like protein NP_561134.1 289079 D 195102 CDS NP_561135.1 18309201 988464 complement(290151..290909) 1 NC_003366.1 similar to C-terminal of gpu:AP001511_12 BH1123 gene product from Bacillus halodurans (526 aa); 34.7% identity in 101 aa overlap.Also similar to C-terminal of many regulatory proteins; AraC family transcriptional regulator 290909 988464 CPE0219 Clostridium perfringens str. 13 AraC family transcriptional regulator NP_561135.1 290151 R 195102 CDS NP_561136.1 18309202 988465 291056..293287 1 NC_003366.1 similar to gpu:AP001518_129 BH3298 gene product from Bacillus halodurans (1071 aa); 24.4% identity in 439 aa overlap. Also some similarity to gp:AB012764_1 Chitinase A from Clostridium paraputrificum (832 aa). N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 293287 988465 CPE0220 Clostridium perfringens str. 13 hypothetical protein NP_561136.1 291056 D 195102 CDS NP_561137.1 18309203 988466 293350..293997 1 NC_003366.1 similar to gpu:AP001518_130 BH3299 gene product from Bacillus halodurans (221 aa); 20.3% identity in 153 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; iron transporter 293997 988466 CPE0221 Clostridium perfringens str. 13 iron transporter NP_561137.1 293350 D 195102 CDS NP_561138.1 18309204 988467 293999..294562 1 NC_003366.1 similar to gpu:AP001519_111 BH3596 gene product from Bacillus halodurans (187 aa); 30.2% identity in 126 aa overlap. N-terminal signal sequence was found by PSORT; sortase 294562 988467 CPE0222 Clostridium perfringens str. 13 sortase NP_561138.1 293999 D 195102 CDS NP_561139.1 18309205 988468 294576..295463 1 NC_003366.1 similar to gpu:AP001518_128 ferrichrome ABC transporter (ferrichrome-binding protein) from Bacillus halodurans (302 aa); 36.2% identity in 287 aa overlap; ferrichrome-binding protein; ferrichrome ABC transporter 295463 988468 CPE0223 Clostridium perfringens str. 13 ferrichrome ABC transporter NP_561139.1 294576 D 195102 CDS NP_561140.1 18309206 988469 295450..296436 1 NC_003366.1 similar to gpu:AP001518_127 ferrichrome ABC transporter (permease) from Bacillus halodurans (328 aa); 35.6% identity in 298 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; permease; ferrichrome ABC transporter 296436 988469 CPE0224 Clostridium perfringens str. 13 ferrichrome ABC transporter NP_561140.1 295450 D 195102 CDS NP_561141.1 18309207 988470 296437..297216 1 NC_003366.1 similar to gpu:AP001518_126 ferrichrome ABC transporter (ATP-binding protein) from Bacillus halodurans (256 aa); 48.4% identity in 250 aa overlap; ATP-binding protein; ferrichrome ABC transporter 297216 fhuC 988470 fhuC Clostridium perfringens str. 13 ferrichrome ABC transporter NP_561141.1 296437 D 195102 CDS NP_561142.1 18309208 988471 297255..298985 1 NC_003366.1 similar to sp:Y663_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN HI0663 from Haemophilus influenzae Rd (560 aa); 44.2% identity in 550 aa overlap. 6 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 298985 988471 CPE0226 Clostridium perfringens str. 13 ABC transporter NP_561142.1 297255 D 195102 CDS NP_561143.1 18309209 988472 298986..300674 1 NC_003366.1 similar to sp:Y664_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN HI0664 from Haemophilus influenzae Rd (552 aa); 43.2% identity in 551 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 300674 988472 CPE0227 Clostridium perfringens str. 13 ABC transporter NP_561143.1 298986 D 195102 CDS NP_561144.1 18309210 988473 300661..301056 1 NC_003366.1 no significant homology. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 301056 988473 CPE0228 Clostridium perfringens str. 13 hypothetical protein NP_561144.1 300661 D 195102 CDS NP_561145.1 18309211 988474 301037..301336 1 NC_003366.1 similar to prf:2511340D ygbA gene from Proteus mirabilis (75 aa); 54.4% identity in 57 aa overlap; hypothetical protein 301336 988474 CPE0229 Clostridium perfringens str. 13 hypothetical protein NP_561145.1 301037 D 195102 CDS NP_561146.1 18309212 988475 301463..301648 1 NC_003366.1 no significant homology.; (Fe-S)-binding protein 301648 988475 CPE0230 Clostridium perfringens str. 13 (Fe-S)-binding protein NP_561146.1 301463 D 195102 CDS NP_561147.1 18309213 988476 301943..303388 1 NC_003366.1 can hydrolyze p-nitrophenyl sulfate; contains a specific cysteine that is converted into C{alpha]-formylglycine upon activation with the anaerobic sulfatase-maturase; arylsulfatase 303388 988476 CPE0231 Clostridium perfringens str. 13 arylsulfatase NP_561147.1 301943 D 195102 CDS NP_561148.1 18309214 988477 complement(303546..304883) 1 NC_003366.1 similar to sp:GLPT_BACSU GLYCEROL-3-PHOSPHATE TRANSPORTER (G-3-P TRANSPORTER) (G-3-P PERMEASE) from Bacillus subtilis (444 aa); 48.5% identity in 412 aa overlap. 8 transmembrane regions were found by PSORT.; glycerol-3-phosphate transporter 304883 glpT 988477 glpT Clostridium perfringens str. 13 glycerol-3-phosphate transporter NP_561148.1 303546 R 195102 CDS NP_561149.1 18309215 988478 complement(305084..306103) 1 NC_003366.1 similar to prf:2223232C Fe-binding protein from Actinobacillus pleuropneumoniae (346 aa); 28.5% identity in 291 aa overlap. N-terminal signal sequence was found by PSORT; periplasmic iron-compound-binding protein; iron(III) ABC transporter 306103 988478 CPE0233 Clostridium perfringens str. 13 iron(III) ABC transporter NP_561149.1 305084 R 195102 CDS NP_561150.1 18309216 988479 complement(306084..306872) 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 306872 988479 CPE0234 Clostridium perfringens str. 13 hypothetical protein NP_561150.1 306084 R 195102 CDS NP_561151.1 18309217 988480 complement(306865..308295) 1 NC_003366.1 similar to gp:AB028738_5 Sensor histidine kinase VirJ from Clostridium perfringens (471 aa); 30.3% identity in 413 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; sensor histidine kinase 308295 988480 CPE0235 Clostridium perfringens str. 13 sensor histidine kinase NP_561151.1 306865 R 195102 CDS NP_561152.1 18309218 988481 complement(308285..308956) 1 NC_003366.1 similar to gp:CAU58131_2 PhoP from Clostridium acetobutylicum (217 aa); 38.3% identity in 222 aa overlap. 1 transmembrane region was found by PSORT; DNA-binding response regulator 308956 988481 CPE0236 Clostridium perfringens str. 13 DNA-binding response regulator NP_561152.1 308285 R 195102 CDS NP_561153.1 18309219 988482 309248..310447 1 NC_003366.1 similar to prf:2210362A grmA gene from Bacillus megaterium (386 aa); 36.4% identity in 357 aa overlap.Also similar to many bacterial Na+/H+ antiporters. N-terminal signal sequence and 12 transmembrane regions were found by PSORT.; Na+/H+ antiporter 310447 napA 988482 napA Clostridium perfringens str. 13 Na+/H+ antiporter NP_561153.1 309248 D 195102 CDS NP_561154.1 18309220 988483 310700..311227 1 NC_003366.1 no significant homology.; hypothetical protein 311227 988483 CPE0238 Clostridium perfringens str. 13 hypothetical protein NP_561154.1 310700 D 195102 CDS NP_561155.1 18309221 988485 311601..312377 1 NC_003366.1 no significant homology.; hypothetical protein 312377 988485 CPE0239 Clostridium perfringens str. 13 hypothetical protein NP_561155.1 311601 D 195102 CDS NP_561156.1 18309222 988486 312795..314225 1 NC_003366.1 partially similar to pir:T28317 ORF MSV156 hypothetical protein from Melanoplus sanguinipes entomopoxvirus (1127 aa); 24.2% identity in 293 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 314225 988486 CPE0240 Clostridium perfringens str. 13 hypothetical protein NP_561156.1 312795 D 195102 CDS NP_561157.1 18309223 988487 314228..314920 1 NC_003366.1 similar to C-terminal half of pir:F81407 probable periplasmic protein Cj0599 from Campylobacter jejuni (strain NCTC 11168) (317 aa); 26% identity in 181 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 314920 988487 CPE0241 Clostridium perfringens str. 13 hypothetical protein NP_561157.1 314228 D 195102 CDS NP_561158.1 18309224 988488 complement(315018..315338) 1 NC_003366.1 similar to prf:2503398E divercin immunity protein from Carnobacterium divergens (97 aa); 64.3% identity in 98 aa overlap; immunity protein 315338 988488 CPE0242 Clostridium perfringens str. 13 immunity protein NP_561158.1 315018 R 195102 CDS NP_561159.1 18309225 988489 315473..315721 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 315721 988489 CPE0243 Clostridium perfringens str. 13 hypothetical protein NP_561159.1 315473 D 195102 CDS NP_561160.1 18309226 988490 315728..316504 1 NC_003366.1 similar to C-terminal of pir:S76167 hypothetical protein from Synechocystis sp. (strain PCC 6803) (529 aa); 34.3% identity in 67 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; hypothetical protein 316504 988490 CPE0244 Clostridium perfringens str. 13 hypothetical protein NP_561160.1 315728 D 195102 CDS NP_561161.1 18309227 988491 complement(316595..318922) 1 NC_003366.1 similar to C-terminal half of gp:BCE243712_8 YkoW protein from Bacillus cereus (892 aa); 32.5% identity in 425 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; diguanylate cyclase 318922 988491 CPE0245 Clostridium perfringens str. 13 diguanylate cyclase NP_561161.1 316595 R 195102 CDS NP_561162.1 18309228 988492 319177..320445 1 NC_003366.1 partially similar to sp:Y798_METJA HYPOTHETICAL PROTEIN MJ0798 from Methanococcus jannaschii (334 aa); 29.1% identity in 134 aa overlap; DnaJ domain-containing protein 320445 988492 CPE0246 Clostridium perfringens str. 13 DnaJ domain-containing protein NP_561162.1 319177 D 195102 CDS NP_561163.1 18309229 988493 320463..321065 1 NC_003366.1 similar to sp:GRPE_FRATU GRPE PROTEIN (HSP-70 COFACTOR) from Francisella tularensis (195 aa); 35.2% identity in 105 aa overlap; heat shock protein GrpE 321065 grpE 988493 grpE Clostridium perfringens str. 13 heat shock protein GrpE NP_561163.1 320463 D 195102 CDS NP_561164.1 18309230 988494 321053..322780 1 NC_003366.1 similar to pir:C72385 dnaK-type molecular chaperone dnaK from Thermotoga maritima (strain MSB8) (596 aa); 43.3% identity in 563 aa overlap; molecular chaperone DnaK 322780 dnaK 988494 dnaK Clostridium perfringens str. 13 molecular chaperone DnaK NP_561164.1 321053 D 195102 CDS NP_561165.1 18309231 988495 322798..323532 1 NC_003366.1 partially similar to prf:2123314A SPR3 gene from Saccharomyces cerevisiae (512 aa); 26.7% identity in 161 aa overlap; hypothetical protein 323532 988495 CPE0249 Clostridium perfringens str. 13 hypothetical protein NP_561165.1 322798 D 195102 CDS NP_561166.1 18309232 988496 323804..324577 1 NC_003366.1 similar to prf:2315479F epsC gene from Lactococcus lactis (254 aa); 37.4% identity in 235 aa overlap; EpsC; capsular polysaccharide biosynthesis protein 324577 988496 CPE0250 Clostridium perfringens str. 13 capsular polysaccharide biosynthesis protein NP_561166.1 323804 D 195102 CDS NP_561167.1 18309233 988497 324892..326214 1 NC_003366.1 similar to pir:H82985 hypothetical protein from Pseudomonas aeruginosa (423 aa); 26.6% identity in 331 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 326214 988497 CPE0251 Clostridium perfringens str. 13 hypothetical protein NP_561167.1 324892 D 195102 CDS NP_561168.1 18309234 988498 complement(326287..326733) 1 NC_003366.1 similar to N-terminal of sp:DIVB_BACSU DIVISION INITIATION PROTEIN (CELL DIVISION AND SPORULATION PROTEIN) from Bacillus subtilis (263 aa); 25.2% identity in 115 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 326733 988498 CPE0252 Clostridium perfringens str. 13 hypothetical protein NP_561168.1 326287 R 195102 CDS NP_561169.1 18309235 988499 326853..327056 1 NC_003366.1 no significant homology.; hypothetical protein 327056 988499 CPE0253 Clostridium perfringens str. 13 hypothetical protein NP_561169.1 326853 D 195102 CDS NP_561170.1 18309236 988500 327069..327317 1 NC_003366.1 no significant homology.; hypothetical protein 327317 988500 CPE0254 Clostridium perfringens str. 13 hypothetical protein NP_561170.1 327069 D 195102 CDS NP_561171.1 18309237 988501 complement(327402..327716) 1 NC_003366.1 no significant homology.; hypothetical protein 327716 988501 CPE0255 Clostridium perfringens str. 13 hypothetical protein NP_561171.1 327402 R 195102 CDS NP_561172.1 18309238 988502 complement(327853..328587) 1 NC_003366.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 328587 988502 CPE0256 Clostridium perfringens str. 13 NAD-dependent deacetylase NP_561172.1 327853 R 195102 CDS NP_561173.1 18309239 988503 328757..329080 1 NC_003366.1 no significant homology. 2 transmembrane regions were found by PSORT.; hypothetical protein 329080 988503 CPE0257 Clostridium perfringens str. 13 hypothetical protein NP_561173.1 328757 D 195102 CDS NP_561174.1 18309240 988504 329114..329323 1 NC_003366.1 similar to pir:H75270 transcription regulator, PbsX family from Deinococcus radiodurans (strain R1) (64 aa); 40% identity in 60 aa overlap; transcriptional regulator 329323 988504 CPE0258 Clostridium perfringens str. 13 transcriptional regulator NP_561174.1 329114 D 195102 CDS NP_561175.1 18309241 988505 329698..330204 1 NC_003366.1 similar to gp:AP001511_272 transcriptional factor from Bacillus halodurans (201 aa); 22.5% identity in 173 aa overlap; CarD family transcriptional regulator 330204 988505 CPE0259 Clostridium perfringens str. 13 CarD family transcriptional regulator NP_561175.1 329698 D 195102 CDS NP_561176.1 18309242 988506 330592..331728 1 NC_003366.1 similar to gpu:AP001516_112 BH2683 gene product from Bacillus halodurans (379 aa); 39% identity in 272 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; mechanosensitive ion channel protein MscS 331728 988506 CPE0260 Clostridium perfringens str. 13 mechanosensitive ion channel protein MscS NP_561176.1 330592 D 195102 CDS NP_561177.1 18309243 988507 331725..332348 1 NC_003366.1 similar to gpu:AE004159_7 copper homeostasis protein from Vibrio cholerae (254 aa); 38.2% identity in 199 aa overlap; copper homeostasis protein 332348 988507 CPE0261 Clostridium perfringens str. 13 copper homeostasis protein NP_561177.1 331725 D 195102 CDS NP_561178.1 18309244 988508 332724..332924 1 NC_003366.1 no significant homology. 2 transmembrane regions were found by PSORT.; hypothetical protein 332924 988508 CPE0262 Clostridium perfringens str. 13 hypothetical protein NP_561178.1 332724 D 195102 CDS NP_561179.1 18309245 988509 complement(333045..334364) 1 NC_003366.1 no significant homology. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; hypothetical protein 334364 988509 CPE0263 Clostridium perfringens str. 13 hypothetical protein NP_561179.1 333045 R 195102 CDS NP_561180.1 18309246 988510 complement(334577..334873) 1 NC_003366.1 no significant homology.; hypothetical protein 334873 988510 CPE0264 Clostridium perfringens str. 13 hypothetical protein NP_561180.1 334577 R 195102 CDS NP_561181.1 18309247 988511 complement(335081..335758) 1 NC_003366.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 335758 988511 CPE0265 Clostridium perfringens str. 13 uracil-DNA glycosylase NP_561181.1 335081 R 195102 CDS NP_561182.1 18309248 988512 336095..338632 1 NC_003366.1 similar to sp:YBBD_BACSU HYPOTHETICAL 70.6 KDA LIPOPROTEIN IN FEUA-SIGW INTERGENIC REGION PRECURSOR (ORF1) from Bacillus subtilis (642 aa); 46.4% identity in 619 aa overlap. Also similar to gp:AP001509_113 beta-hexosamidase A precursor from Bacillus halodurans. N-terminal signal sequence and 1 transmembrane region were found by PSORT; beta-hexosamidase A 338632 988512 CPE0266 Clostridium perfringens str. 13 beta-hexosamidase A NP_561182.1 336095 D 195102 CDS NP_561183.1 18309249 988519 complement(344672..345139) 1 NC_003366.1 similar to gpu:AP001510_123 bacterioferritin comigratory protein from Bacillus halodurans (154 aa); 61.2% identity in 147 aa overlap; bacterioferritin comigratory protein 345139 988519 CPE0267 Clostridium perfringens str. 13 bacterioferritin comigratory protein NP_561183.1 344672 R 195102 CDS NP_561184.1 18309250 988520 345779..346525 1 NC_003366.1 similar to gpu:AP001511_66 protein secretion (post-translocation chaperonin) from Bacillus halodurans (333 aa); 31.5% identity in 235 aa overlap; hypothetical protein 346525 988520 CPE0268 Clostridium perfringens str. 13 hypothetical protein NP_561184.1 345779 D 195102 CDS NP_561185.1 18309251 988521 346988..347800 1 NC_003366.1 similar to gp:AF071085_12 ABC transporter permease from Enterococcus faecalis (264 aa); 32.7% identity in 269 aa overlap. 6 transmembrane regions were found by PSORT.; permease; ABC transporter 347800 988521 CPE0269 Clostridium perfringens str. 13 ABC transporter NP_561185.1 346988 D 195102 CDS NP_561186.1 18309252 988522 347818..348990 1 NC_003366.1 similar to gp:AB030032_11 ABC transporter from Actinobacillus actinomycetemcomitans (398 aa); 43.7% identity in 387 aa overlap; ATP-binding protein; ABC transporter 348990 988522 CPE0270 Clostridium perfringens str. 13 ABC transporter NP_561186.1 347818 D 195102 CDS NP_561187.1 18309253 988523 349004..350287 1 NC_003366.1 similar to pir:C75592 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (415 aa); 27.1% identity in 251 aa overlap; hypothetical protein 350287 988523 CPE0271 Clostridium perfringens str. 13 hypothetical protein NP_561187.1 349004 D 195102 CDS NP_561188.1 18309254 988524 350306..351541 1 NC_003366.1 similar to prf:2318308D cps19bP gene from Streptococcus pneumoniae (360 aa); 30.5% identity in 256 aa overlap; hypothetical protein 351541 988524 CPE0272 Clostridium perfringens str. 13 hypothetical protein NP_561188.1 350306 D 195102 CDS NP_561189.1 18309255 988525 351555..352736 1 NC_003366.1 similar to gp:AB030032_11 ABC transporter from Actinobacillus actinomycetemcomitans (398 aa); 40.1% identity in 389 aa overlap; ATP-binding protein; ABC transporter 352736 988525 CPE0273 Clostridium perfringens str. 13 ABC transporter NP_561189.1 351555 D 195102 CDS NP_561190.1 18309256 988526 352851..354284 1 NC_003366.1 similar to prf:2318308D cps19bP gene from Streptococcus pneumoniae (360 aa); 26.6% identity in 361 aa overlap; hypothetical protein 354284 988526 CPE0274 Clostridium perfringens str. 13 hypothetical protein NP_561190.1 352851 D 195102 CDS NP_561191.1 18309257 988527 complement(354420..355073) 1 NC_003366.1 similar to gp:AE003576_10 Gs1l gene product from Drosophila melanogaster (231 aa); 29.2% identity in 209 aa overlap; haloacid dehalogenase 355073 988527 CPE0275 Clostridium perfringens str. 13 haloacid dehalogenase NP_561191.1 354420 R 195102 CDS NP_561192.1 18309258 988528 complement(355156..356505) 1 NC_003366.1 partially similar to pir:G72256 hydrogenase (EC 1.18.99.1) (Fe) large chain from Thermotoga maritima (strain MSB8) (645 aa); 31.3% identity in 240 aa overlap; hydrogenase 356505 988528 CPE0276 Clostridium perfringens str. 13 hydrogenase NP_561192.1 355156 R 195102 CDS NP_561193.1 18309259 988530 357202..357492 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 357492 988530 CPE0277 Clostridium perfringens str. 13 hypothetical protein NP_561193.1 357202 D 195102 CDS NP_561194.1 18309260 988531 357677..358975 1 NC_003366.1 similar to gp:LMO250194_1 P45 from Listeria monocytogenes (401 aa); 26% identity in 388 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 358975 988531 CPE0278 Clostridium perfringens str. 13 hypothetical protein NP_561194.1 357677 D 195102 CDS NP_561195.1 18309261 988532 359149..359919 1 NC_003366.1 similar to sp:YABB_BACSU HYPOTHETICAL 28.3 KDA PROTEIN IN XPAC-ABRB INTERGENIC REGION from Bacillus subtilis (247 aa); 43.3% identity in 240 aa overlap; hypothetical protein 359919 988532 CPE0279 Clostridium perfringens str. 13 hypothetical protein NP_561195.1 359149 D 195102 CDS NP_561196.1 18309262 988533 359922..360764 1 NC_003366.1 similar to gpu:AP001507_49 BH0049 gene product from Bacillus halodurans (289 aa); 52.4% identity in 271 aa overlap; tetrapyrrole methylase 360764 988533 CPE0280 Clostridium perfringens str. 13 tetrapyrrole methylase NP_561196.1 359922 D 195102 CDS NP_561197.1 18309263 988534 complement(361080..361319) 1 NC_003366.1 similar to gpu:AP001507_50 transcriptional pleiotropic regulator of transition state genes from Bacillus halodurans (96 aa); 76.7% identity in 60 aa overlap; AbrB family transcriptional regulator 361319 988534 CPE0281 Clostridium perfringens str. 13 AbrB family transcriptional regulator NP_561197.1 361080 R 195102 CDS NP_561198.1 18309264 988535 362011..362610 1 NC_003366.1 no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 362610 988535 CPE0282 Clostridium perfringens str. 13 hypothetical protein NP_561198.1 362011 D 195102 CDS NP_561199.1 18309265 988536 complement(362646..363521) 1 NC_003366.1 similar to sp:LAXC_LACLA LACX PROTEIN, CHROMOSOMAL from Lactococcus lactis (299 aa); 33% identity in 288 aa overlap; hypothetical protein 363521 988536 CPE0283 Clostridium perfringens str. 13 hypothetical protein NP_561199.1 362646 R 195102 CDS NP_561200.1 18309266 988537 complement(363632..364654) 1 NC_003366.1 similar to gp:EFA276231_1 PSR protein from Enterococcus faecalis (390 aa); 29.3% identity in 324 aa overlap. 1 transmembrane region was found by PSORT; transcriptional regulator 364654 988537 CPE0284 Clostridium perfringens str. 13 transcriptional regulator NP_561200.1 363632 R 195102 CDS NP_561201.1 18309267 988538 364830..365681 1 NC_003366.1 similar to prf:2516401CC yfkH gene from Bacillus cereus (289 aa); 39.4% identity in 249 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 365681 988538 CPE0285 Clostridium perfringens str. 13 hypothetical protein NP_561201.1 364830 D 195102 CDS NP_561202.1 18309268 988539 complement(365742..366728) 1 NC_003366.1 similar to gpu:AP001510_283 UDP-glucose 4-epimerase from Bacillus halodurans (334 aa); 63.5% identity in 326 aa overlap; UDP-glucose 4-epimerase 366728 galE 988539 galE Clostridium perfringens str. 13 UDP-glucose 4-epimerase NP_561202.1 365742 R 195102 CDS NP_561203.1 18309269 988540 366883..367227 1 NC_003366.1 similar to gp:BA1242593_64 SSB protein from Bacteriophage A118 (160 aa); 45% identity in 111 aa overlap; SSB; phage-related single-strand DNA binding protein 367227 988540 CPE0287 Clostridium perfringens str. 13 phage-related single-strand DNA binding protein NP_561203.1 366883 D 195102 CDS NP_561204.1 18309270 988541 complement(367303..368424) 1 NC_003366.1 similar to gp:RCAFDXC_3 ORFU1 product, potential FMN-protein from Rhodobacter capsulatus (435 aa); 42.6% identity in 387 aa overlap; flavoprotein 368424 988541 CPE0288 Clostridium perfringens str. 13 flavoprotein NP_561204.1 367303 R 195102 CDS NP_561205.1 18309271 988542 complement(369002..372418) 1 NC_003366.1 similar to gpu:AP001509_223 endo-beta-N-acetylglucosaminidase from Bacillus halodurans (878 aa); 45% identity in 845 aa overlap. N-terminal signal sequence was found by PSORT; endo-beta-N-acetylglucosaminidase 372418 988542 CPE0289 Clostridium perfringens str. 13 endo-beta-N-acetylglucosaminidase NP_561205.1 369002 R 195102 CDS NP_561206.1 18309272 988543 372789..373094 1 NC_003366.1 no significant homology.; hypothetical protein 373094 988543 CPE0290 Clostridium perfringens str. 13 hypothetical protein NP_561206.1 372789 D 195102 CDS NP_561207.1 18309273 988544 373143..373544 1 NC_003366.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 373544 acpS 988544 acpS Clostridium perfringens str. 13 4'-phosphopantetheinyl transferase NP_561207.1 373143 D 195102 CDS NP_561208.1 18309274 988545 373531..375030 1 NC_003366.1 similar to pir:C72317 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (490 aa); 37.6% identity in 474 aa overlap; carbohydrate kinase 375030 988545 CPE0292 Clostridium perfringens str. 13 carbohydrate kinase NP_561208.1 373531 D 195102 CDS NP_561209.1 18309275 988546 375091..375684 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 375684 988546 CPE0293 Clostridium perfringens str. 13 hypothetical protein NP_561209.1 375091 D 195102 CDS NP_561210.1 18309276 988547 375931..376173 1 NC_003366.1 no significant homology.; hypothetical protein 376173 988547 CPE0294 Clostridium perfringens str. 13 hypothetical protein NP_561210.1 375931 D 195102 CDS NP_561211.1 18309277 988548 376179..376532 1 NC_003366.1 similar to gpu:AP001508_245 BH0522 gene product from Bacillus halodurans (116 aa); 73.9% identity in 111 aa overlap; PemK family protein 376532 988548 CPE0295 Clostridium perfringens str. 13 PemK family protein NP_561211.1 376179 D 195102 CDS NP_561212.1 18309278 988549 376970..377794 1 NC_003366.1 similar to sp:TKTN_METJA TRANSKETOLASE N-TERMINAL SECTION (EC 2.2.1.1) (TK) from Methanococcus jannaschii (274 aa); 57.7% identity in 267 aa overlap; transketolase 377794 tktN 988549 tktN Clostridium perfringens str. 13 transketolase NP_561212.1 376970 D 195102 CDS NP_561213.1 18309279 988550 377794..378738 1 NC_003366.1 similar to sp:TKTC_METJA TRANSKETOLASE C-TERMINAL SECTION (EC 2.2.1.1) (TK) from Methanococcus jannaschii (316 aa); 51.2% identity in 303 aa overlap. 1 transmembrane region was found by PSORT; transketolase 378738 tktC 988550 tktC Clostridium perfringens str. 13 transketolase NP_561213.1 377794 D 195102 CDS NP_561214.1 18309280 988551 378965..379822 1 NC_003366.1 similar to pir:G72409 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (283 aa); 37% identity in 281 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 379822 988551 CPE0298 Clostridium perfringens str. 13 hypothetical protein NP_561214.1 378965 D 195102 CDS NP_561215.1 18309281 988552 380028..380714 1 NC_003366.1 similar to pir:D69627 cell-division ATP-binding protein ftsE from Bacillus subtilis (228 aa); 60.7% identity in 224 aa overlap; cell-division ATP-binding protein 380714 ftsE 988552 ftsE Clostridium perfringens str. 13 cell-division ATP-binding protein NP_561215.1 380028 D 195102 CDS NP_561216.1 18309282 988553 380680..381612 1 NC_003366.1 similar to sp:FTSX_BACSU CELL DIVISION PROTEIN FTSX HOMOLOG from Bacillus subtilis (296 aa); 28.3% identity in 251 aa overlap. 4 transmembrane regions were found by PSORT.; cell-division protein 381612 ftsX 988553 ftsX Clostridium perfringens str. 13 cell-division protein NP_561216.1 380680 D 195102 CDS NP_561217.1 18309283 988554 381701..382987 1 NC_003366.1 similar to pir:B69610 carboxy-terminal processing proteinase ctpA (EC 3.4.99.-) from Bacillus subtilis (466 aa); 41% identity in 376 aa overlap. N-terminal signal sequence was found by PSORT.; carboxyl-terminal protease 382987 988554 CPE0301 Clostridium perfringens str. 13 carboxyl-terminal protease NP_561217.1 381701 D 195102 CDS NP_561218.1 18309284 988555 383010..384290 1 NC_003366.1 no significant homology. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; hypothetical protein 384290 988555 CPE0302 Clostridium perfringens str. 13 hypothetical protein NP_561218.1 383010 D 195102 CDS NP_561219.1 18309285 988556 384378..386357 1 NC_003366.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 386357 uvrB 988556 uvrB Clostridium perfringens str. 13 excinuclease ABC subunit B NP_561219.1 384378 D 195102 CDS NP_561220.1 18309286 988557 386623..387474 1 NC_003366.1 similar to sp:DEGV_BACSU DEGV PROTEIN from Bacillus subtilis (281 aa); 32.3% identity in 279 aa overlap. 1 transmembrane region was found by PSORT; degV family protein 387474 988557 CPE0304 Clostridium perfringens str. 13 degV family protein NP_561220.1 386623 D 195102 CDS NP_561221.1 18309287 988558 387705..388430 1 NC_003366.1 similar to pir:B72334 ABC transporter, ATP-binding protein from Thermotoga maritima (strain MSB8) (260 aa); 42.9% identity in 238 aa overlap; ATP-binding protein; ABC transporter 388430 988558 CPE0305 Clostridium perfringens str. 13 ABC transporter NP_561221.1 387705 D 195102 CDS NP_561222.1 18309288 988559 388423..390021 1 NC_003366.1 partially similar to gp:BSP250862_5 MrsE protein from Bacillus sp. HIL-Y85/54728 (244 aa); 27.9% identity in 183 aa overlap. 13 transmembrane regions were found by PSORT.; hypothetical protein 390021 988559 CPE0306 Clostridium perfringens str. 13 hypothetical protein NP_561222.1 388423 D 195102 CDS NP_561223.1 18309289 988560 390238..391242 1 NC_003366.1 similar to pir:T43794 probable lipase lipA from Clostridium perfringens (311 aa); 23.1% identity in 260 aa overlap. N-terminal signal sequence was found by PSORT; lipase 391242 988560 CPE0307 Clostridium perfringens str. 13 lipase NP_561223.1 390238 D 195102 CDS NP_561224.1 18309290 988561 391401..392966 1 NC_003366.1 similar to N-terminal of sp:MUTS_THEMA DNA MISMATCH REPAIR PROTEIN MUTS from Thermotoga maritima (793 aa); 32.2% identity in 267 aa overlap. 2 transmembrane regions were found by PSORT.; MutS domain-containing protein 392966 988561 CPE0308 Clostridium perfringens str. 13 MutS domain-containing protein NP_561224.1 391401 D 195102 CDS NP_561225.1 18309291 988562 392981..393667 1 NC_003366.1 similar to sp:YCBG_BACSU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN GLTP-CWLJ INTERGENIC REGION (ORF6). from Bacillus subtilis (233 aa); 30.8% identity in 224 aa overlap; GntR family; transcriptional regulator 393667 988562 CPE0309 Clostridium perfringens str. 13 transcriptional regulator NP_561225.1 392981 D 195102 CDS NP_561226.1 18309292 988563 393902..395425 1 NC_003366.1 similar to gp:SILCT_2 lactate premease from Streptococcus iniae (474 aa); 49.5% identity in 416 aa overlap. N-terminal signal sequence and 13 transmembrane regions were found by PSORT.; L-lactate permease 395425 988563 CPE0310 Clostridium perfringens str. 13 L-lactate permease NP_561226.1 393902 D 195102 CDS NP_561227.1 18309293 988564 395519..396307 1 NC_003366.1 similar to sp:ETFB_CLOTS ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT (BETA-ETF) (ELECTRON TRANSFER FLAVOPROTEIN SMALL SUBUNIT) (ETFSS) from Clostridium thermosaccharolyticum (260 aa); 44.9% identity in 256 aa overlap; electron transfer flavoprotein subunit beta 396307 etfB 988564 etfB Clostridium perfringens str. 13 electron transfer flavoprotein subunit beta NP_561227.1 395519 D 195102 CDS NP_561228.1 18309294 988565 396320..397513 1 NC_003366.1 similar to sp:ETFA_CLOTS ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT (ALPHA-ETF) (ELECTRON TRANSFER FLAVOPROTEIN LARGE SUBUNIT) (ETFLS) from Clostridium thermosaccharolyticum (330 aa); 49.1% identity in 212 aa overlap. 1 transmembrane region was found by PSORT; electron-transfer flavoprotein alpha-subunit 397513 eftA 988565 eftA Clostridium perfringens str. 13 electron-transfer flavoprotein alpha-subunit NP_561228.1 396320 D 195102 CDS NP_561229.1 18309295 988566 397515..398915 1 NC_003366.1 similar to pir:D69984 glycolate oxidase subunit homolog ysfC from Bacillus subtilis (470 aa); 39.9% identity in 431 aa overlap. 2 transmembrane regions were found by PSORT.; glycolate oxidase subunit 398915 988566 CPE0313 Clostridium perfringens str. 13 glycolate oxidase subunit NP_561229.1 397515 D 195102 CDS NP_561230.1 18309296 988567 complement(398998..399396) 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 399396 988567 CPE0314 Clostridium perfringens str. 13 hypothetical protein NP_561230.1 398998 R 195102 CDS NP_561231.1 18309297 988568 399764..400273 1 NC_003366.1 similar to sp:LEP_STAAU SIGNAL PEPTIDASE IB (EC 3.4.21.89) (SPASE IB) (LEADER PEPTIDASE IB) from Staphylococcus aureus (191 aa); 40% identity in 165 aa overlap. N-terminal signal sequence was found by PSORT; type I signal peptidase 400273 sipS 988568 sipS Clostridium perfringens str. 13 type I signal peptidase NP_561231.1 399764 D 195102 CDS NP_561232.1 18309298 988569 complement(400516..401295) 1 NC_003366.1 similar to gpu:AP001510_1 transcriptional repressor from Bacillus halodurans (251 aa); 32.3% identity in 220 aa overlap; transcriptional regulator 401295 988569 CPE0316 Clostridium perfringens str. 13 transcriptional regulator NP_561232.1 400516 R 195102 CDS NP_561233.1 18309299 988570 401487..402890 1 NC_003366.1 similar to gpu:AP001512_138 rhamnulokinase (EC 2.7.1.5) from Bacillus halodurans (467 aa); 43.6% identity in 463 aa overlap; rhamnulokinase 402890 fucK 988570 fucK Clostridium perfringens str. 13 rhamnulokinase NP_561233.1 401487 D 195102 CDS NP_561234.1 18309300 988571 402971..404758 1 NC_003366.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 404758 fucI 988571 fucI Clostridium perfringens str. 13 L-fucose isomerase NP_561234.1 402971 D 195102 CDS NP_561235.1 18309301 988572 404788..405444 1 NC_003366.1 catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase 405444 fucA 988572 fucA Clostridium perfringens str. 13 L-fuculose phosphate aldolase NP_561235.1 404788 D 195102 CDS NP_561236.1 18309302 988573 405449..405886 1 NC_003366.1 similar to N-terminal of gp:AF130465_1 mannose-specific phosphotransferase system component IIAB from Streptococcus salivarius (330 aa); 34.7% identity in 98 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 405886 988573 CPE0320 Clostridium perfringens str. 13 hypothetical protein NP_561236.1 405449 D 195102 CDS NP_561237.1 18309303 988574 405877..406350 1 NC_003366.1 similar to gp:AF129168_5 EIIB sorbose-PTS homolog from Lactobacillus casei (164 aa); 38.9% identity in 157 aa overlap; mannose-specific component IIAB; PTS system protein 406350 988574 CPE0321 Clostridium perfringens str. 13 PTS system protein NP_561237.1 405877 D 195102 CDS NP_561238.1 18309304 988575 406367..407143 1 NC_003366.1 similar to sp:PTNC_ECOLI PTS SYSTEM, MANNOSE-SPECIFIC IIC COMPONENT (EIIC-MAN) (MANNOSE- PERMEASE IIC COMPONENT) (PHOSPHOTRANSFERASE ENZYME II, C COMPONENT) (EII-P-MAN) from Escherichia coli (266 aa); 33.5% identity in 239 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; mannose-specific component IIC; PTS system protein 407143 988575 CPE0322 Clostridium perfringens str. 13 PTS system protein NP_561238.1 406367 D 195102 CDS NP_561239.1 18309305 988576 407140..407943 1 NC_003366.1 similar to gp:AF130465_3 mannose-specific phosphotransferase system component IID from Streptococcus salivarius (303 aa); 37% identity in 254 aa overlap. 5 transmembrane regions were found by PSORT.; mannose-specific component IID; PTS system protein 407943 988576 CPE0323 Clostridium perfringens str. 13 PTS system protein NP_561239.1 407140 D 195102 CDS NP_561240.1 18309306 988577 408080..409396 1 NC_003366.1 similar to pir:T36467 probable glycosyl hydrolase from Streptomyces coelicolor (423 aa); 34% identity in 332 aa overlap; glycosyl hydrolase 409396 988577 CPE0324 Clostridium perfringens str. 13 glycosyl hydrolase NP_561240.1 408080 D 195102 CDS NP_561241.1 18309307 988578 409414..411303 1 NC_003366.1 partially similar to pir:T36462 hypothetical protein SCF85.02 from Streptomyces coelicolor (499 aa); 33.3% identity in 78 aa overlap; hypothetical protein 411303 988578 CPE0325 Clostridium perfringens str. 13 hypothetical protein NP_561241.1 409414 D 195102 CDS NP_561242.1 18309308 988579 411556..411984 1 NC_003366.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization; galactose-6-phosphate isomerase subunit LacA 411984 lacA 988579 lacA Clostridium perfringens str. 13 galactose-6-phosphate isomerase subunit LacA NP_561242.1 411556 D 195102 CDS NP_561243.1 18309309 988580 412020..412535 1 NC_003366.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; galactose-6-phosphate isomerase subunit LacB 412535 lacB 988580 lacB Clostridium perfringens str. 13 galactose-6-phosphate isomerase subunit LacB NP_561243.1 412020 D 195102 CDS NP_561244.1 18309310 988581 412552..413484 1 NC_003366.1 similar to sp:LACC_STAAU TAGATOSE-6-PHOSPHATE KINASE (EC 2.7.1.144) (PHOSPHOTAGATOKINASE) from Staphylococcus aureus (310 aa); 56.8% identity in 310 aa overlap; tagatose-6-phosphate kinase 413484 lacC 988581 lacC Clostridium perfringens str. 13 tagatose-6-phosphate kinase NP_561244.1 412552 D 195102 CDS NP_561245.1 18309311 988582 413725..416112 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 416112 988582 CPE0329 Clostridium perfringens str. 13 hypothetical protein NP_561245.1 413725 D 195102 CDS NP_561246.1 18309312 988583 complement(416323..416703) 1 NC_003366.1 similar to pir:C69850 hypothetical protein yjgA from Bacillus subtilis (132 aa); 54.2% identity in 107 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 416703 988583 CPE0330 Clostridium perfringens str. 13 hypothetical protein NP_561246.1 416323 R 195102 CDS NP_561247.1 18309313 988584 417022..417696 1 NC_003366.1 partially similar to pir:S32215 hypothetical protein 1 from Bacillus megaterium (226 aa); 54.4% identity in 57 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 417696 988584 CPE0331 Clostridium perfringens str. 13 hypothetical protein NP_561247.1 417022 D 195102 CDS NP_561248.1 18309314 988585 complement(417887..418510) 1 NC_003366.1 similar to sp:APL_LACLC ALKALINE PHOSPHATASE LIKE PROTEIN from Lactococcus lactis (242 aa); 32.5% identity in 169 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; DedA family protein 418510 988585 CPE0332 Clostridium perfringens str. 13 DedA family protein NP_561248.1 417887 R 195102 CDS NP_561249.1 18309315 988586 complement(418607..421264) 1 NC_003366.1 similar to pir:H69877 calcium-transporting ATPase homolog yloB from Bacillus subtilis (890 aa); 42.1% identity in 837 aa overlap. 9 transmembrane regions were found by PSORT.; cation-transporting ATPase 421264 988586 CPE0333 Clostridium perfringens str. 13 cation-transporting ATPase NP_561249.1 418607 R 195102 CDS NP_561250.1 18309316 988587 422038..422601 1 NC_003366.1 some similarity to gpu:AB018117_28 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQL5 from Arabidopsis thaliana (268 aa); 37.6% identity in 125 aa overlap; hypothetical protein 422601 988587 CPE0334 Clostridium perfringens str. 13 hypothetical protein NP_561250.1 422038 D 195102 CDS NP_561251.1 18309317 988588 423159..423731 1 NC_003366.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 423731 xpt 988588 xpt Clostridium perfringens str. 13 xanthine phosphoribosyltransferase NP_561251.1 423159 D 195102 CDS NP_561252.1 18309318 988589 424217..425149 1 NC_003366.1 similar to pir:D71226 hypothetical protein PH0070 from Pyrococcus horikoshii (275 aa); 30.4% identity in 273 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein 425149 988589 CPE0336 Clostridium perfringens str. 13 hypothetical protein NP_561252.1 424217 D 195102 CDS NP_561253.1 18309319 988590 425340..426722 1 NC_003366.1 similar to gp:BCE237785_5 amino acid transporter from Bacillus cereus (471 aa); 44.1% identity in 454 aa overlap. 11 transmembrane regions were found by PSORT.; amino acid transporter 426722 988590 CPE0337 Clostridium perfringens str. 13 amino acid transporter NP_561253.1 425340 D 195102 CDS NP_561254.1 18309320 988591 complement(426876..428180) 1 NC_003366.1 partially similar to pir:S74882 hypothetical protein sll1151 from Synechocystis sp. (strain PCC 6803) (605 aa); 30.4% identity in 227 aa overlap. 7 transmembrane regions were found by PSORT.; hypothetical protein 428180 988591 CPE0338 Clostridium perfringens str. 13 hypothetical protein NP_561254.1 426876 R 195102 CDS NP_561255.1 18309321 988592 428452..429837 1 NC_003366.1 similar to pir:D72342 tldD protein from Thermotoga maritima (strain MSB8) (499 aa); 51.6% identity in 467 aa overlap; TldD protein 429837 tldD 988592 tldD Clostridium perfringens str. 13 TldD protein NP_561255.1 428452 D 195102 CDS NP_561256.1 18309322 988593 429853..431202 1 NC_003366.1 similar to pir:E70461 pmbA protein from Synechocystis sp. (strain PCC 6803) (441 aa); 34.3% identity in 428 aa overlap; TldD/PmbA family protein 431202 pmbA 988593 pmbA Clostridium perfringens str. 13 TldD/PmbA family protein NP_561256.1 429853 D 195102 CDS NP_561257.1 18309323 988594 431519..433105 1 NC_003366.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 433105 988594 CPE0341 Clostridium perfringens str. 13 aspartate aminotransferase NP_561257.1 431519 D 195102 CDS NP_561258.1 18309324 988595 433417..433899 1 NC_003366.1 similar to gp:MAV011838_4 methylated-DNA-protein-cystein methyltransferase from Mycobacterium avium subsp. paratuberculosis (165 aa); 46.6% identity in 133 aa overlap; methylated-DNA-protein-cystein methyltransferase 433899 988595 CPE0342 Clostridium perfringens str. 13 methylated-DNA-protein-cystein methyltransferase NP_561258.1 433417 D 195102 CDS NP_561259.1 18309325 988596 433948..436122 1 NC_003366.1 similar to pir:F69901 DNA helicase recQ from Bacillus subtilis (591 aa); 48.1% identity in 590 aa overlap. 1 transmembrane region was found by PSORT; ATP-dependent DNA helicase RecQ 436122 recQ 988596 recQ Clostridium perfringens str. 13 ATP-dependent DNA helicase RecQ NP_561259.1 433948 D 195102 CDS NP_561260.1 18309326 988597 436353..437150 1 NC_003366.1 similar to gpu:AP001513_52 BH1779 gene product from Bacillus halodurans (287 aa); 36.9% identity in 252 aa overlap; hypothetical protein 437150 988597 CPE0344 Clostridium perfringens str. 13 hypothetical protein NP_561260.1 436353 D 195102 CDS NP_561261.1 18309327 988598 437275..438732 1 NC_003366.1 similar to gpu:AE004241_1 conserved hypothetical protein from Vibrio cholerae (458 aa); 29.3% identity in 444 aa overlap; hypothetical protein 438732 988598 CPE0345 Clostridium perfringens str. 13 hypothetical protein NP_561261.1 437275 D 195102 CDS NP_561262.1 18309328 988599 438898..439647 1 NC_003366.1 similar to pir:C69661 transcription activator of multidrug-efflux transporter genes mta from Bacillus subtilis (257 aa); 44.3% identity in 246 aa overlap; transcriptional regulator 439647 988599 CPE0346 Clostridium perfringens str. 13 transcriptional regulator NP_561262.1 438898 D 195102 CDS NP_561263.1 18309329 988600 complement(439781..440452) 1 NC_003366.1 similar to sp:YEIL_ECOLI HYPOTHETICAL 25.3 KDA PROTEIN IN NFO-FRUA INTERGENIC REGION from Escherichia coli (219 aa); 26.9% identity in 201 aa overlap. Also similar to prf:2508375B FNR-like protein from Lactococcus lactis and many transcriptional regulators; transcriptional regulator 440452 988600 CPE0347 Clostridium perfringens str. 13 transcriptional regulator NP_561263.1 439781 R 195102 CDS NP_561264.1 18309330 988601 441396..444215 1 NC_003366.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 444215 uvrA 988601 uvrA Clostridium perfringens str. 13 excinuclease ABC subunit A NP_561264.1 441396 D 195102 CDS NP_561265.1 18309331 988602 444550..444984 1 NC_003366.1 similar to pir:A70700 hypothetical protein Rv0019c from Mycobacterium tuberculosis (strain H37RV) (155 aa); 31.8% identity in 88 aa overlap. N-terminal signal sequence was found by PSORT; FHA domain-containing protein 444984 988602 CPE0349 Clostridium perfringens str. 13 FHA domain-containing protein NP_561265.1 444550 D 195102 CDS NP_561266.1 18309332 988603 444998..446227 1 NC_003366.1 similar to sp:FTSW_MYCTU PROBABLE CELL DIVISION PROTEIN FTSW from Mycobacterium tuberculosis (469 aa); 35.6% identity in 354 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; FtsW/RodA/SpoVE family cell cycle protein 446227 ftsW 988603 ftsW Clostridium perfringens str. 13 FtsW/RodA/SpoVE family cell cycle protein NP_561266.1 444998 D 195102 CDS NP_561267.1 18309333 988604 446228..447691 1 NC_003366.1 similar to pir:T36716 probable penicillin-binding protein from Streptomyces coelicolor (490 aa); 32.8% identity in 473 aa overlap. N-terminal signal sequence was found by PSORT; penicillin-binding protein 447691 988604 CPE0351 Clostridium perfringens str. 13 penicillin-binding protein NP_561267.1 446228 D 195102 CDS NP_561268.1 18309334 988605 447848..449710 1 NC_003366.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 449710 uvrC 988605 uvrC Clostridium perfringens str. 13 excinuclease ABC subunit C NP_561268.1 447848 D 195102 CDS NP_561269.1 18309335 988606 449859..450773 1 NC_003366.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 450773 murB 988606 murB Clostridium perfringens str. 13 UDP-N-acetylenolpyruvoylglucosamine reductase NP_561269.1 449859 D 195102 CDS NP_561270.1 18309336 988607 451013..451897 1 NC_003366.1 similar to gpu:AP001519_84 BH3569 gene product from Bacillus halodurans (295 aa); 50.9% identity in 291 aa overlap; hypothetical protein 451897 988607 CPE0354 Clostridium perfringens str. 13 hypothetical protein NP_561270.1 451013 D 195102 CDS NP_561271.1 18309337 988608 451894..453240 1 NC_003366.1 similar to sp:YAMB_THETU HYPOTHETICAL 35.6 KDA PROTEIN IN AMYB 5'REGION (ORF1) from Thermoanaerobacterium thermosulfurigenes (323 aa); 55.7% identity in 300 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 453240 988608 CPE0355 Clostridium perfringens str. 13 hypothetical protein NP_561271.1 451894 D 195102 CDS NP_561272.1 18309338 988609 453243..454193 1 NC_003366.1 similar to gp:SAY14324_4 Staphylococcus aureus partial ORF292 and ORF271, ORF331 and ORF314 from Staphylococcus aureus (314 aa); 46.8% identity in 314 aa overlap; hypothetical protein 454193 988609 CPE0356 Clostridium perfringens str. 13 hypothetical protein NP_561272.1 453243 D 195102 CDS NP_561273.1 18309339 988610 454367..454921 1 NC_003366.1 similar to C-terminal of prf:1711414A USO1 gene from Saccharomyces cerevisiae (1790 aa); 29.7% identity in 148 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 454921 988610 CPE0357 Clostridium perfringens str. 13 hypothetical protein NP_561273.1 454367 D 195102 CDS NP_561274.1 18309340 988611 complement(455050..456294) 1 NC_003366.1 no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 456294 988611 CPE0358 Clostridium perfringens str. 13 hypothetical protein NP_561274.1 455050 R 195102 CDS NP_561275.1 18309341 988612 complement(456308..456844) 1 NC_003366.1 similar to gpu:AP001509_58 RNA polymerase ECF-type sigma factor from Bacillus halodurans (177 aa); 30.3% identity in 142 aa overlap; RNA polymerase ECF-type sigma factor 456844 988612 CPE0359 Clostridium perfringens str. 13 RNA polymerase ECF-type sigma factor NP_561275.1 456308 R 195102 CDS NP_561276.1 18309342 988613 457313..460891 1 NC_003366.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE 460891 dnaE 988613 dnaE Clostridium perfringens str. 13 DNA polymerase III DnaE NP_561276.1 457313 D 195102 CDS NP_561277.1 18309343 988614 461602..462561 1 NC_003366.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 462561 pfkA 988614 pfkA Clostridium perfringens str. 13 6-phosphofructokinase NP_561277.1 461602 D 195102 CDS NP_561278.1 18309344 988615 462655..464058 1 NC_003366.1 similar to sp:KPYK_BACSU PYRUVATE KINASE (EC 2.7.1.40) (PK) (VEGETATIVE PROTEIN 17) (VEG17) from Bacillus subtilis (585 aa); 56% identity in 466 aa overlap. 1 transmembrane region was found by PSORT; pyruvate kinase 464058 pykA 988615 pykA Clostridium perfringens str. 13 pyruvate kinase NP_561278.1 462655 D 195102 CDS NP_561279.1 18309345 988616 464641..464997 1 NC_003366.1 no significant homology.; hypothetical protein 464997 988616 CPE0363 Clostridium perfringens str. 13 hypothetical protein NP_561279.1 464641 D 195102 CDS NP_561280.1 18309346 988617 465305..466102 1 NC_003366.1 similar to pir:T35593 probable dehydrogenase from Streptomyces coelicolor (257 aa); 32.4% identity in 210 aa overlap; dehydrogenase 466102 988617 CPE0364 Clostridium perfringens str. 13 dehydrogenase NP_561280.1 465305 D 195102 CDS NP_561281.1 18309347 988618 466277..467812 1 NC_003366.1 similar to sp:CLS_CLOPE CARDIOLIPIN SYNTHETASE (EC 2.7.8.-) (CARDIOLIPIN SYNTHASE) (CL SYNTHASE) from Clostridium perfringens (476 aa); 34.1% identity in 451 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; cardiolipin synthetase 467812 clsB 988618 clsB Clostridium perfringens str. 13 cardiolipin synthetase NP_561281.1 466277 D 195102 CDS NP_561282.1 18309348 988619 468439..470001 1 NC_003366.1 similar to pir:B69780 transcription regulator GntR family homolog ydfD from Bacillus subtilis (482 aa); 26.7% identity in 475 aa overlap; GntR family; GntR family transcriptional regulator 470001 988619 CPE0366 Clostridium perfringens str. 13 GntR family transcriptional regulator NP_561282.1 468439 D 195102 CDS NP_561283.1 18309349 988620 470131..471498 1 NC_003366.1 similar to gpu:AP001509_125 RNA methyltransferase from Bacillus halodurans (458 aa); 50.8% identity in 451 aa overlap; RNA methyltransferase 471498 988620 CPE0367 Clostridium perfringens str. 13 RNA methyltransferase NP_561283.1 470131 D 195102 CDS NP_561284.1 18309350 988621 472441..473340 1 NC_003366.1 no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 473340 988621 CPE0368 Clostridium perfringens str. 13 hypothetical protein NP_561284.1 472441 D 195102 CDS NP_561285.1 18309351 988622 473520..477425 1 NC_003366.1 similar to pir:H69898 hypothetical protein yobI from Bacillus subtilis (1201 aa); 28% identity in 1236 aa overlap. ATC start. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 477425 988622 CPE0369 Clostridium perfringens str. 13 hypothetical protein NP_561285.1 473520 D 195102 CDS NP_561286.1 18309352 988623 complement(477962..478819) 1 NC_003366.1 similar to pir:A42400 probable transcription regulator msmR from Streptococcus mutans (278 aa); 32.8% identity in 271 aa overlap; AraC/XylS family; transcriptional regulator 478819 988623 CPE0370 Clostridium perfringens str. 13 transcriptional regulator NP_561286.1 477962 R 195102 CDS NP_561287.1 18309353 988624 479008..480276 1 NC_003366.1 similar to gpu:AP001513_137 BH1864 gene product from Bacillus halodurans (461 aa); 30.2% identity in 420 aa overlap; hypothetical protein 480276 988624 CPE0371 Clostridium perfringens str. 13 hypothetical protein NP_561287.1 479008 D 195102 CDS NP_561288.1 18309354 988625 480350..481276 1 NC_003366.1 similar to gpu:AP001513_138 sugar transport system (permease) (binding protein dependent transporter) from Bacillus halodurans (309 aa); 35.1% identity in 291 aa overlap. 6 transmembrane regions were found by PSORT.; permease; ABC transporter 481276 988625 CPE0372 Clostridium perfringens str. 13 ABC transporter NP_561288.1 480350 D 195102 CDS NP_561289.1 18309355 988626 481293..482120 1 NC_003366.1 similar to pir:A56641 probable membrane transport protein from Clostridium perfringens (275 aa); 68.5% identity in 251 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permease; suger ABC transporter 482120 988626 CPE0373 Clostridium perfringens str. 13 suger ABC transporter NP_561289.1 481293 D 195102 CDS NP_561290.1 18309356 988627 482148..484355 1 NC_003366.1 similar to gp:AF038547_4 alpha-galactosidase (EC 3.2.1.22) (melibiase) from Bacillus stearothermophilus (743 aa); 52.4% identity in 735 aa overlap; alpha-galactosidase 484355 aga 988627 aga Clostridium perfringens str. 13 alpha-galactosidase NP_561290.1 482148 D 195102 CDS NP_561291.1 18309357 988628 484394..486931 1 NC_003366.1 similar to gpu:AB038772_1 endo-beta-galactosidase C from Clostridium perfringens (845 aa); 97.2% identity in 832 aa overlap. N-terminal signal sequence was found by PSORT; endo-beta-galactosidase C 486931 988628 CPE0375 Clostridium perfringens str. 13 endo-beta-galactosidase C NP_561291.1 484394 D 195102 CDS NP_561292.1 18309358 988629 487133..487684 1 NC_003366.1 no significant homology.; hypothetical protein 487684 988629 CPE0376 Clostridium perfringens str. 13 hypothetical protein NP_561292.1 487133 D 195102 CDS NP_561293.1 18309359 988630 487803..488381 1 NC_003366.1 similar to gpu:AP001518_225 BH3394 gene product from Bacillus halodurans (186 aa); 25% identity in 180 aa overlap; TetR/AcrR family; TetR family transcriptional regulator 488381 988630 CPE0377 Clostridium perfringens str. 13 TetR family transcriptional regulator NP_561293.1 487803 D 195102 CDS NP_561294.1 18309360 988631 488731..490524 1 NC_003366.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; hypothetical protein 490524 988631 CPE0378 Clostridium perfringens str. 13 hypothetical protein NP_561294.1 488731 D 195102 CDS NP_561295.1 18309361 988632 490919..492652 1 NC_003366.1 similar to gp:SC7A8_2 ABC transporter from Streptomyces coelicolor A3(2) (577 aa); 39.1% identity in 575 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter permease/ATP-binding protein 492652 988632 CPE0379 Clostridium perfringens str. 13 ABC transporter permease/ATP-binding protein NP_561295.1 490919 D 195102 CDS NP_561296.1 18309362 988633 492645..494426 1 NC_003366.1 similar to gp:SC7A8_3 ABC transporter from Streptomyces coelicolor A3(2) (642 aa); 46.1% identity in 532 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 494426 988633 CPE0380 Clostridium perfringens str. 13 ABC transporter NP_561296.1 492645 D 195102 CDS NP_561297.1 18309363 988634 complement(494507..494905) 1 NC_003366.1 similar to pir:H72370 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (284 aa); 27.4% identity in 124 aa overlap; hypothetical protein 494905 988634 CPE0381 Clostridium perfringens str. 13 hypothetical protein NP_561297.1 494507 R 195102 CDS NP_561298.1 18309364 988635 495171..496199 1 NC_003366.1 similar to sp:YNGE_CLOPE HYPOTHETICAL PROTEIN IN NAGH 3'REGION (ORFE) (FRAGMENT) from Clostridium perfringens (88 aa); 100% identity in 87 aa overlap. Also similar to gp:CLOLYC_1 autolytic lysozyme from Clostridium acetobutylicum; autolytic lysozyme 496199 988635 CPE0382 Clostridium perfringens str. 13 autolytic lysozyme NP_561298.1 495171 D 195102 CDS NP_561299.1 18309365 988636 496521..496928 1 NC_003366.1 similar to sp:YNGD_CLOPE HYPOTHETICAL 14.9 KDA PROTEIN IN NAGH 3'REGION (ORFD) from Clostridium perfringens (132 aa); 78.1% identity in 128 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 496928 988636 CPE0383 Clostridium perfringens str. 13 hypothetical protein NP_561299.1 496521 D 195102 CDS NP_561300.1 18309366 988637 complement(497081..498001) 1 NC_003366.1 similar to pir:A70081 conserved hypothetical protein yxkH from Bacillus subtilis (279 aa); 31.1% identity in 254 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 498001 988637 CPE0384 Clostridium perfringens str. 13 hypothetical protein NP_561300.1 497081 R 195102 CDS NP_561301.1 18309367 988638 498485..499225 1 NC_003366.1 similar to sp:Y325_THEMA HYPOTHETICAL OXIDOREDUCTASE TM0325 (EC 1.-.-.-) from Thermotoga maritima (251 aa); 39.9% identity in 263 aa overlap; oxidoreductase 499225 988638 CPE0385 Clostridium perfringens str. 13 oxidoreductase NP_561301.1 498485 D 195102 CDS NP_561302.1 18309368 988639 complement(499248..499979) 1 NC_003366.1 similar to gpu:AP001515_128 transcriptional regulator (GntR family) from Bacillus halodurans (242 aa); 27.2% identity in 217 aa overlap; GntR family; transcriptional regulator 499979 988639 CPE0386 Clostridium perfringens str. 13 transcriptional regulator NP_561302.1 499248 R 195102 CDS NP_561303.1 18309369 988640 500213..500998 1 NC_003366.1 similar to sp:UDP_TREPA URIDINE PHOSPHORYLASE (EC 2.4.2.3) (UDRPASE) from Treponema pallidum (258 aa); 54.2% identity in 249 aa overlap. 1 transmembrane region was found by PSORT; uridine phosphorylase 500998 udp 988640 udp Clostridium perfringens str. 13 uridine phosphorylase NP_561303.1 500213 D 195102 CDS NP_561304.1 18309370 988641 501176..502366 1 NC_003366.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 502366 deoB 988641 deoB Clostridium perfringens str. 13 phosphopentomutase NP_561304.1 501176 D 195102 CDS NP_561305.1 18309371 988642 complement(502793..504238) 1 NC_003366.1 similar to gpu:AP002548_234 arginine/ornithine antiporter from Chlamydophila pneumoniae (481 aa); 48.7% identity in 456 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; amino acid permease 504238 arcD 988642 arcD Clostridium perfringens str. 13 amino acid permease NP_561305.1 502793 R 195102 CDS NP_561306.1 18309372 988643 complement(504284..505246) 1 NC_003366.1 similar to pir:DCCLHP histidine decarboxylase (EC 4.1.1.22) precursor from Clostridium perfringens (320 aa); 99.7% identity in 320 aa overlap; histidine decarboxylase, pyruvoyl type 505246 dchS 988643 dchS Clostridium perfringens str. 13 histidine decarboxylase, pyruvoyl type NP_561306.1 504284 R 195102 CDS NP_561307.1 18309373 988644 505714..506547 1 NC_003366.1 similar to pir:D69860 probable phosphoesterase (EC 3.1.-.-) ykoQ from Bacillus subtilis (270 aa); 28.8% identity in 271 aa overlap. N-terminal signal sequence was found by PSORT; phosphoesterase 506547 988644 CPE0391 Clostridium perfringens str. 13 phosphoesterase NP_561307.1 505714 D 195102 CDS NP_561308.1 18309374 988645 506672..506824 1 NC_003366.1 no significant homology.; hypothetical protein 506824 988645 CPE0392 Clostridium perfringens str. 13 hypothetical protein NP_561308.1 506672 D 195102 CDS NP_561309.1 18309375 988646 506921..507784 1 NC_003366.1 similar to sp:YKWC_BACSU HYPOTHETICAL 30.7 KDA PROTEIN IN MCPC-KINA INTERGENIC REGION from Bacillus subtilis (288 aa); 51.7% identity in 286 aa overlap. Also similar to many dehydrogenases; hypothetical protein 507784 988646 CPE0393 Clostridium perfringens str. 13 hypothetical protein NP_561309.1 506921 D 195102 CDS NP_561310.1 18309376 988647 508092..508997 1 NC_003366.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 508997 nadA 988647 nadA Clostridium perfringens str. 13 quinolinate synthetase NP_561310.1 508092 D 195102 CDS NP_561311.1 18309377 988648 509002..510321 1 NC_003366.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 510321 nadB 988648 nadB Clostridium perfringens str. 13 L-aspartate oxidase NP_561311.1 509002 D 195102 CDS NP_561312.1 18309378 988649 510278..511117 1 NC_003366.1 similar to pir:B70375 quinolinate phosphoribosyl transferase (EC 2.4.2.19) from Aquifex aeolicus (274 aa); 55.7% identity in 273 aa overlap; nicotinate-nucleotide pyrophosphorylase 511117 nadC 988649 nadC Clostridium perfringens str. 13 nicotinate-nucleotide pyrophosphorylase NP_561312.1 510278 D 195102 CDS NP_561313.1 18309379 988650 complement(511369..512727) 1 NC_003366.1 similar to sp:YCPX_CLOPE HYPOTHETICAL PROTEIN IN CPE 5'REGION (FRAGMENT) from Clostridium perfringens (311 aa); 88.2% identity in 306 aa overlap. Also similar to many permeases. 11 transmembrane regions were found by PSORT.; transporter 512727 uapC 988650 uapC Clostridium perfringens str. 13 transporter NP_561313.1 511369 R 195102 CDS NP_561314.1 18309380 988651 513402..514220 1 NC_003366.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 514220 deoD 988651 deoD Clostridium perfringens str. 13 purine nucleoside phosphorylase NP_561314.1 513402 D 195102 CDS NP_561315.1 18309381 988652 514310..514987 1 NC_003366.1 similar to pir:E83401 probable transporter PA1958 from Pseudomonas aeruginosa (191 aa); 23.6% identity in 178 aa overlap. 6 transmembrane regions were found by PSORT.; transporter 514987 988652 CPE0399 Clostridium perfringens str. 13 transporter NP_561315.1 514310 D 195102 CDS NP_561316.1 18309382 988653 515021..515662 1 NC_003366.1 no significant homology.; hypothetical protein 515662 988653 CPE0400 Clostridium perfringens str. 13 hypothetical protein NP_561316.1 515021 D 195102 CDS NP_561317.1 18309383 988654 515887..516204 1 NC_003366.1 no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 516204 988654 CPE0401 Clostridium perfringens str. 13 hypothetical protein NP_561317.1 515887 D 195102 CDS NP_561318.1 18309384 988655 516217..516828 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 516828 988655 CPE0402 Clostridium perfringens str. 13 hypothetical protein NP_561318.1 516217 D 195102 CDS NP_561319.1 18309385 988656 517036..517572 1 NC_003366.1 no significant homology. 2 transmembrane regions were found by PSORT.; hypothetical protein 517572 988656 CPE0403 Clostridium perfringens str. 13 hypothetical protein NP_561319.1 517036 D 195102 CDS NP_561320.1 18309386 988657 518306..519643 1 NC_003366.1 similar to pir:C69596 branched-chain amino acid transporter braB from Bacillus subtilis (445 aa); 44.5% identity in 418 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; branched chain amino acid ABC transporter carrier protein 519643 brnQ 988657 brnQ Clostridium perfringens str. 13 branched chain amino acid ABC transporter carrier protein NP_561320.1 518306 D 195102 CDS NP_561321.1 18309387 988658 519899..520771 1 NC_003366.1 similar to gp:LSEXOGC_5 L.sake gene cluster from Lactobacillus sakei (283 aa); 43.4% identity in 274 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 520771 988658 CPE0405 Clostridium perfringens str. 13 hypothetical protein NP_561321.1 519899 D 195102 CDS NP_561322.1 18309388 988659 520903..522249 1 NC_003366.1 similar to pir:G70034 reticuline oxidase homolog yvdP from Bacillus subtilis (447 aa); 30.6% identity in 451 aa overlap; reticuline oxidase 522249 988659 CPE0406 Clostridium perfringens str. 13 reticuline oxidase NP_561322.1 520903 D 195102 CDS NP_561323.1 18309389 988660 522549..522902 1 NC_003366.1 no significant homology. 2 transmembrane regions were found by PSORT.; hypothetical protein 522902 988660 CPE0407 Clostridium perfringens str. 13 hypothetical protein NP_561323.1 522549 D 195102 CDS NP_561324.1 18309390 988661 523097..523921 1 NC_003366.1 similar to gpu:AP001513_19 BH1746 gene product from Bacillus halodurans (282 aa); 36.2% identity in 271 aa overlap; hypothetical protein 523921 988661 CPE0408 Clostridium perfringens str. 13 hypothetical protein NP_561324.1 523097 D 195102 CDS NP_561325.1 18309391 988662 524071..525504 1 NC_003366.1 similar to pir:E72254 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (479 aa); 43.9% identity in 467 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 525504 988662 CPE0409 Clostridium perfringens str. 13 hypothetical protein NP_561325.1 524071 D 195102 CDS NP_561326.1 18309392 988663 525713..526912 1 NC_003366.1 similar to gp:CPIS1136_1 C.perfringens IS1136 DNA from Clostridium perfringens (122 aa); 65.6% identity in 125 aa overlap; IS1136; transposase 526912 988663 CPE0410 Clostridium perfringens str. 13 transposase NP_561326.1 525713 D 195102 CDS NP_561327.1 18309393 988664 527033..527965 1 NC_003366.1 partially similar to pir:C75218 probable monooxygenase PAB0184 from Pyrococcus abyssi (strain Orsay) (407 aa); 26.3% identity in 259 aa overlap. 1 transmembrane region was found by PSORT; monooxygenase 527965 988664 CPE0411 Clostridium perfringens str. 13 monooxygenase NP_561327.1 527033 D 195102 CDS NP_561328.1 18309394 988665 528206..528583 1 NC_003366.1 similar to pir:F32057 hypothetical protein 2 from Azotobacter vinelandii (183 aa); 33.3% identity in 123 aa overlap; hypothetical protein 528583 988665 CPE0412 Clostridium perfringens str. 13 hypothetical protein NP_561328.1 528206 D 195102 CDS NP_561329.1 18309395 988666 528800..529372 1 NC_003366.1 similar to pir:F69993 carbonic anhydrase homolog ytiB from Bacillus subtilis (187 aa); 57.7% identity in 182 aa overlap; carbonic anhydrase 529372 988666 CPE0413 Clostridium perfringens str. 13 carbonic anhydrase NP_561329.1 528800 D 195102 CDS NP_561330.1 18309396 988667 529513..530151 1 NC_003366.1 no significant homology. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 530151 988667 CPE0414 Clostridium perfringens str. 13 hypothetical protein NP_561330.1 529513 D 195102 CDS NP_561331.1 18309397 988668 530176..530565 1 NC_003366.1 no significant homology.; hypothetical protein 530565 988668 CPE0415 Clostridium perfringens str. 13 hypothetical protein NP_561331.1 530176 D 195102 CDS NP_561332.1 18309398 988669 530899..532770 1 NC_003366.1 molecular chaperone; heat shock protein 90 532770 htpG 988669 htpG Clostridium perfringens str. 13 heat shock protein 90 NP_561332.1 530899 D 195102 CDS NP_561333.1 18309399 988670 532934..533926 1 NC_003366.1 similar to sp:MALR_STRPN MALTOSE OPERON TRANSCRIPTIONAL REPRESSOR from Streptococcus pneumoniae (327 aa); 39.4% identity in 310 aa overlap; LacI family; LacI family transcriptional regulator 533926 988670 CPE0417 Clostridium perfringens str. 13 LacI family transcriptional regulator NP_561333.1 532934 D 195102 CDS NP_561334.1 18309400 988671 534362..536026 1 NC_003366.1 similar to gp:BACEA14G_1 exo-alpha-1,4-glucosidase from Bacillus stearothermophilus (555 aa); 62.3% identity in 551 aa overlap; exo-alpha-1,4-glucosidase 536026 988671 CPE0418 Clostridium perfringens str. 13 exo-alpha-1,4-glucosidase NP_561334.1 534362 D 195102 CDS NP_561335.1 18309401 988672 536285..537940 1 NC_003366.1 similar to gp:SMU78600_1 ptsG protein from Streptococcus mutans (409 aa); 51.1% identity in 266 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; glucose-specific enzyme IIA component; PTS system transporter subunit IIBC 537940 988672 CPE0419 Clostridium perfringens str. 13 PTS system transporter subunit IIBC NP_561335.1 536285 D 195102 CDS NP_561336.1 18309402 988673 537951..538742 1 NC_003366.1 some similarity to pir:T37061 probable secreted protein from Streptomyces coelicolor (279 aa); 23.9% identity in 176 aa overlap; hypothetical protein 538742 988673 CPE0420 Clostridium perfringens str. 13 hypothetical protein NP_561336.1 537951 D 195102 CDS NP_561337.1 18309403 988674 539283..540020 1 NC_003366.1 similar to pir:F69961 glycerophosphodiester phosphodiesterase homolog yqiK from Bacillus subtilis (243 aa); 37% identity in 235 aa overlap; glycerophosphodiester phosphodiesterase 540020 glpQ 988674 glpQ Clostridium perfringens str. 13 glycerophosphodiester phosphodiesterase NP_561337.1 539283 D 195102 CDS NP_561338.1 18309404 988675 540117..541403 1 NC_003366.1 similar to sp:YIHN_ECOLI HYPOTHETICAL 46.3 KDA PROTEIN IN GLNA-RBN INTERGENIC REGION (O421) from Escherichia coli (421 aa); 37.5% identity in 408 aa overlap; hypothetical protein 541403 988675 CPE0422 Clostridium perfringens str. 13 hypothetical protein NP_561338.1 540117 D 195102 CDS NP_561339.1 18309405 988676 541903..544515 1 NC_003366.1 similar to gpu:AP001509_86 ATP-dependent DNA helicase from Bacillus halodurans (747 aa); 30.3% identity in 478 aa overlap; ATP-dependent DNA helicase 544515 pcrA 988676 pcrA Clostridium perfringens str. 13 ATP-dependent DNA helicase NP_561339.1 541903 D 195102 CDS NP_561340.1 18309406 988677 544692..545351 1 NC_003366.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 545351 trmB 988677 trmB Clostridium perfringens str. 13 tRNA (guanine-N(7)-)-methyltransferase NP_561340.1 544692 D 195102 CDS NP_561341.1 18309407 988678 complement(545510..546364) 1 NC_003366.1 partially similar to gp:CLOTETP_1 Clostridium perfringens tetracycline resistance protein (tetA(P) and tetB(P)) genes, complete cds's, and three unidentified coding regions from Clostridium perfringens (102 aa); 60.8% identity in 102 aa overlap; hypothetical protein 546364 988678 CPE0425 Clostridium perfringens str. 13 hypothetical protein NP_561341.1 545510 R 195102 CDS NP_561342.1 18309408 988679 546981..548264 1 NC_003366.1 similar to gpu:AP001509_228 BH0790 gene product from Bacillus halodurans (454 aa); 52.8% identity in 396 aa overlap; hypothetical protein 548264 988679 CPE0426 Clostridium perfringens str. 13 hypothetical protein NP_561342.1 546981 D 195102 CDS NP_561343.1 18309409 988680 548732..549310 1 NC_003366.1 no significant homology.; hypothetical protein 549310 988680 CPE0427 Clostridium perfringens str. 13 hypothetical protein NP_561343.1 548732 D 195102 CDS NP_561344.1 18309410 988681 549541..549696 1 NC_003366.1 no significant homology.; hypothetical protein 549696 988681 CPE0428 Clostridium perfringens str. 13 hypothetical protein NP_561344.1 549541 D 195102 CDS NP_561345.1 18309411 988682 550064..550615 1 NC_003366.1 no significant homology. 2 transmembrane regions were found by PSORT.; hypothetical protein 550615 988682 CPE0429 Clostridium perfringens str. 13 hypothetical protein NP_561345.1 550064 D 195102 CDS NP_561346.1 18309412 988683 complement(550703..551245) 1 NC_003366.1 similar to sp:LEPU_BACSU SIGNAL PEPTIDASE I U (EC 3.4.21.89) (SPASE I) (LEADER PEPTIDASE I) from Bacillus subtilis (187 aa); 35% identity in 143 aa overlap. N-terminal signal sequence was found by PSORT. transmembrane region was found by PSORT; type I signal peptidase 551245 sipS 988683 sipS Clostridium perfringens str. 13 type I signal peptidase NP_561346.1 550703 R 195102 CDS NP_561347.1 18309413 988684 551453..552295 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 552295 988684 CPE0431 Clostridium perfringens str. 13 hypothetical protein NP_561347.1 551453 D 195102 CDS NP_561348.1 18309414 988685 552580..553419 1 NC_003366.1 similar to gpu:AE004250_8 beta-ketoadipate enol-lactone hydrolase, from Vibrio cholerae (272 aa); 34.5% identity in 252 aa overlap; alpha/beta fold family hydrolase 553419 988685 CPE0432 Clostridium perfringens str. 13 alpha/beta fold family hydrolase NP_561348.1 552580 D 195102 CDS NP_561349.1 18309415 988686 553503..554798 1 NC_003366.1 partially similar to sp:Y164_METJA HYPOTHETICAL PROTEIN MJ0164 from Methanococcus jannaschii (395 aa); 29.5% identity in 234 aa overlap; hypothetical protein 554798 988686 CPE0433 Clostridium perfringens str. 13 hypothetical protein NP_561349.1 553503 D 195102 CDS NP_561350.1 18309416 988687 555174..555662 1 NC_003366.1 no significant homology.; GNAT family acetyltransferase 555662 988687 CPE0434 Clostridium perfringens str. 13 GNAT family acetyltransferase NP_561350.1 555174 D 195102 CDS NP_561351.1 18309417 988688 complement(555721..556056) 1 NC_003366.1 no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 556056 988688 CPE0435 Clostridium perfringens str. 13 hypothetical protein NP_561351.1 555721 R 195102 CDS NP_561352.1 18309418 988689 complement(556062..556478) 1 NC_003366.1 no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 556478 988689 CPE0436 Clostridium perfringens str. 13 hypothetical protein NP_561352.1 556062 R 195102 CDS NP_561353.1 18309419 988690 557024..558361 1 NC_003366.1 similar to gp:AF051356_4 hemolysin from Streptococcus mutans (445 aa); 32.8% identity in 412 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hemolysin 558361 hlyB 988690 hlyB Clostridium perfringens str. 13 hemolysin NP_561353.1 557024 D 195102 CDS NP_561354.1 18309420 988691 558636..559688 1 NC_003366.1 similar to pir:S74691 iron transport protein from Synechocystis sp. (strain PCC 6803) (360 aa); 37% identity in 338 aa overlap; iron-binding protein; ion-uptake ABC transporter 559688 988691 CPE0438 Clostridium perfringens str. 13 ion-uptake ABC transporter NP_561354.1 558636 D 195102 CDS NP_561355.1 18309421 988692 559688..561280 1 NC_003366.1 similar to pir:E81435 probable iron-uptake ABC transport system permease Cj0174c from Campylobacter jejuni (strain NCTC 11168) (538 aa); 34.6% identity in 529 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; permease; iron-uptake ABC transporter 561280 988692 CPE0439 Clostridium perfringens str. 13 iron-uptake ABC transporter NP_561355.1 559688 D 195102 CDS NP_561356.1 18309422 988693 561283..561963 1 NC_003366.1 similar to gpu:AP001508_235 ABC transporter (ATP-binding protein) from Bacillus halodurans (349 aa); 46.7% identity in 225 aa overlap; ATP-binding protein; ABC transporter 561963 988693 CPE0440 Clostridium perfringens str. 13 ABC transporter NP_561356.1 561283 D 195102 CDS NP_561357.1 18309423 988694 562253..562942 1 NC_003366.1 similar to gp:MBHRDED_1 hypothetical protein from Methanosarcina barkeri (225 aa); 43.9% identity in 198 aa overlap; hypothetical protein 562942 988694 CPE0441 Clostridium perfringens str. 13 hypothetical protein NP_561357.1 562253 D 195102 CDS NP_561358.1 18309424 988695 563132..563305 1 NC_003366.1 no significant homology.; BFD-like iron-sulfur cluster-binding protein 563305 988695 CPE0442 Clostridium perfringens str. 13 BFD-like iron-sulfur cluster-binding protein NP_561358.1 563132 D 195102 CDS NP_561359.1 18309425 988696 563577..563948 1 NC_003366.1 similar to gpu:AP001509_89 transcriptional regulator (GntR family) from Bacillus halodurans (123 aa); 58.2% identity in 122 aa overlap; GntR family; GntR family transcriptional regulator 563948 988696 CPE0443 Clostridium perfringens str. 13 GntR family transcriptional regulator NP_561359.1 563577 D 195102 CDS NP_561360.1 18309426 988697 563982..564845 1 NC_003366.1 similar to gpu:AP001509_90 ABC transporter (ATP-binding protein) from Bacillus halodurans (288 aa); 46.9% identity in 286 aa overlap; ATP-binding protein; ABC transporter 564845 988697 CPE0444 Clostridium perfringens str. 13 ABC transporter NP_561360.1 563982 D 195102 CDS NP_561361.1 18309427 988698 564847..565473 1 NC_003366.1 no significant homology. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 565473 988698 CPE0445 Clostridium perfringens str. 13 hypothetical protein NP_561361.1 564847 D 195102 CDS NP_561362.1 18309428 988699 565475..566116 1 NC_003366.1 no significant homology. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 566116 988699 CPE0446 Clostridium perfringens str. 13 hypothetical protein NP_561362.1 565475 D 195102 CDS NP_561363.1 18309429 988700 566258..566638 1 NC_003366.1 similar to sp:LGUL_HAEIN LACTOYLGLUTATHIONE LYASE (EC 4.4.1.5) (METHYLGLYOXALASE) (ALDOKETOMUTASE) (GLYOXALASE I) (GLX I) (KETONE-ALDEHYDE MUTASE) (S-D-LACTOYLGLUTATHIONE METHYLGLYOXAL LYASE) from Haemophilus influenzae (135 aa); 47.5% identity in 122 aa overlap; lactoylglutathione lyase 566638 lguL 988700 lguL Clostridium perfringens str. 13 lactoylglutathione lyase NP_561363.1 566258 D 195102 CDS NP_561364.1 18309430 988701 complement(566776..567633) 1 NC_003366.1 similar to gp:AE001762_11 transcriptional regulator, from Thermotoga maritima (299 aa); 26.4% identity in 239 aa overlap; AraC/XylS family; transcriptional regulator 567633 988701 CPE0448 Clostridium perfringens str. 13 transcriptional regulator NP_561364.1 566776 R 195102 CDS NP_561365.1 18309431 988702 567822..568970 1 NC_003366.1 similar to sp:ADH2_ECOLI PROBABLE ALCOHOL DEHYDROGENASE (EC 1.1.1.1) from Escherichia coli (383 aa); 63.8% identity in 378 aa overlap; alcohol dehydrogenase 568970 adh 988702 adh Clostridium perfringens str. 13 alcohol dehydrogenase NP_561365.1 567822 D 195102 CDS NP_561366.1 18309432 988703 569554..569877 1 NC_003366.1 no significant homology.; hypothetical protein 569877 988703 CPE0450 Clostridium perfringens str. 13 hypothetical protein NP_561366.1 569554 D 195102 CDS NP_561367.1 18309433 988704 569990..570382 1 NC_003366.1 similar to sp:YWKD_BACSU HYPOTHETICAL 14.8 KDA PROTEIN IN TDK-PRFA INTERGENIC REGION from Bacillus subtilis (128 aa); 64.3% identity in 126 aa overlap; hypothetical protein 570382 988704 CPE0451 Clostridium perfringens str. 13 hypothetical protein NP_561367.1 569990 D 195102 CDS NP_561368.1 18309434 988705 570703..572580 1 NC_003366.1 partially similar to gp:AF192766_1 enterotoxin from Bacillus cereus (419 aa); 31.5% identity in 130 aa overlap. N-terminal signal sequence was found by PSORT; enterotoxin 572580 entC 988705 entC Clostridium perfringens str. 13 enterotoxin NP_561368.1 570703 D 195102 CDS NP_561369.1 18309435 988706 complement(572798..573583) 1 NC_003366.1 similar to gpu:AP001519_11 transcriptional regulator of multidrug-efflux transporter genes from Bacillus halodurans (271 aa); 33.8% identity in 240 aa overlap; MerR family; MerR family transcriptional regulator 573583 988706 CPE0453 Clostridium perfringens str. 13 MerR family transcriptional regulator NP_561369.1 572798 R 195102 CDS NP_561370.1 18309436 988707 573696..575516 1 NC_003366.1 no significant homology. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein 575516 988707 CPE0454 Clostridium perfringens str. 13 hypothetical protein NP_561370.1 573696 D 195102 CDS NP_561371.1 18309437 988708 575822..576331 1 NC_003366.1 similar to N-terminal of sp:APL_LACLC ALKALINE PHOSPHATASE LIKE PROTEIN from Lactococcus lactis (242 aa); 30.5% identity in 154 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; alkaline phosphatase-like protein 576331 988708 CPE0455 Clostridium perfringens str. 13 alkaline phosphatase-like protein NP_561371.1 575822 D 195102 CDS NP_561372.1 18309438 988709 576404..577036 1 NC_003366.1 no significant homology.; hypothetical protein 577036 988709 CPE0456 Clostridium perfringens str. 13 hypothetical protein NP_561372.1 576404 D 195102 CDS NP_561373.1 18309439 988710 577266..577970 1 NC_003366.1 similar to gpu:AP001511_42 two-component response regulator from Bacillus halodurans (232 aa); 55.7% identity in 230 aa overlap; DNA-binding response regulator 577970 988710 CPE0457 Clostridium perfringens str. 13 DNA-binding response regulator NP_561373.1 577266 D 195102 CDS NP_561374.1 18309440 988711 577945..580176 1 NC_003366.1 similar to gpu:AP001511_43 BH1154 gene product from Bacillus halodurans (750 aa); 29.8% identity in 652 aa overlap. 6 transmembrane regions were found by PSORT.; sensor histidine kinase 580176 988711 CPE0458 Clostridium perfringens str. 13 sensor histidine kinase NP_561374.1 577945 D 195102 CDS NP_561375.1 18309441 988712 580610..580855 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 580855 988712 CPE0459 Clostridium perfringens str. 13 hypothetical protein NP_561375.1 580610 D 195102 CDS NP_561376.1 18309442 988713 580950..581645 1 NC_003366.1 partially similar to gpu:AE004017_3 conserved hypothetical protein from Xylella fastidiosa (740 aa); 29.8% identity in 171 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein 581645 988713 CPE0460 Clostridium perfringens str. 13 hypothetical protein NP_561376.1 580950 D 195102 CDS NP_561377.1 18309443 988714 582364..583026 1 NC_003366.1 similar to gpu:AP001519_184 capsular polysaccharide biosynthesis from Bacillus halodurans (232 aa); 19.5% identity in 215 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; capsular polysaccharide biosynthesis protein 583026 988714 CPE0461 Clostridium perfringens str. 13 capsular polysaccharide biosynthesis protein NP_561377.1 582364 D 195102 CDS NP_561378.1 18309444 988715 583049..583726 1 NC_003366.1 similar to gpu:AP001519_183 capsular polysaccharide biosynthesis from Bacillus halodurans (235 aa); 52.1% identity in 188 aa overlap; capsular polysaccharide biosynthesis protein 583726 988715 CPE0462 Clostridium perfringens str. 13 capsular polysaccharide biosynthesis protein NP_561378.1 583049 D 195102 CDS NP_561379.1 18309445 988716 583751..585664 1 NC_003366.1 similar to gp:AF155805_2 Cps9E from Streptococcus suis (608 aa); 43.4% identity in 588 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; capsular polysaccharide biosynthesis protein 585664 988716 CPE0463 Clostridium perfringens str. 13 capsular polysaccharide biosynthesis protein NP_561379.1 583751 D 195102 CDS NP_561380.1 18309446 988717 585795..586937 1 NC_003366.1 similar to pir:F70037 spore coat polysaccharide biosynthesis homolog yvfE from Bacillus subtilis (301 aa); 57.3% identity in 286 aa overlap. Also similar to many aminotransferases; spore coat polysaccharide biosynthesis protein 586937 988717 CPE0464 Clostridium perfringens str. 13 spore coat polysaccharide biosynthesis protein NP_561380.1 585795 D 195102 CDS NP_561381.1 18309447 988718 586974..588206 1 NC_003366.1 no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 588206 988718 CPE0465 Clostridium perfringens str. 13 hypothetical protein NP_561381.1 586974 D 195102 CDS NP_561382.1 18309448 988719 588224..588637 1 NC_003366.1 no significant homology.; hypothetical protein 588637 988719 CPE0466 Clostridium perfringens str. 13 hypothetical protein NP_561382.1 588224 D 195102 CDS NP_561383.1 18309449 988720 588699..589616 1 NC_003366.1 some similarity to gpu:AP001508_4 ABC transporter (ATP-binding protein) from Bacillus halodurans (213 aa); 22.8% identity in 123 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 589616 988720 CPE0467 Clostridium perfringens str. 13 hypothetical protein NP_561383.1 588699 D 195102 CDS NP_561384.1 18309450 988721 589646..589933 1 NC_003366.1 no significant homology.; hypothetical protein 589933 988721 CPE0468 Clostridium perfringens str. 13 hypothetical protein NP_561384.1 589646 D 195102 CDS NP_561385.1 18309451 988722 589908..590363 1 NC_003366.1 no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 590363 988722 CPE0469 Clostridium perfringens str. 13 hypothetical protein NP_561385.1 589908 D 195102 CDS NP_561386.1 18309452 988723 590494..590679 1 NC_003366.1 no significant homology.; hypothetical protein 590679 988723 CPE0470 Clostridium perfringens str. 13 hypothetical protein NP_561386.1 590494 D 195102 CDS NP_561387.1 18309453 988724 590799..591017 1 NC_003366.1 no significant homology.; hypothetical protein 591017 988724 CPE0471 Clostridium perfringens str. 13 hypothetical protein NP_561387.1 590799 D 195102 CDS NP_561388.1 18309454 988725 complement(591064..592935) 1 NC_003366.1 similar to pir:F75142 abc transporter ATP-binding protein PAB2148 from Pyrococcus abyssi (strain Orsay) (580 aa); 24.7% identity in 547 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 592935 988725 CPE0472 Clostridium perfringens str. 13 ABC transporter NP_561388.1 591064 R 195102 CDS NP_561389.1 18309455 988726 593436..594053 1 NC_003366.1 similar to pir:T44837 probable UDP-galactose phosphate transferase from Acinetobacter lwoffii (203 aa); 55.1% identity in 196 aa overlap. N-terminal signal sequence was found by PSORT; UDP-galactose phosphate transferase 594053 988726 CPE0473 Clostridium perfringens str. 13 UDP-galactose phosphate transferase NP_561389.1 593436 D 195102 CDS NP_561390.1 18309456 988727 594105..594743 1 NC_003366.1 similar to pir:E70037 serine O-acetyltransferase homolog yvfD from Bacillus subtilis (216 aa); 33.2% identity in 214 aa overlap. N-terminal signal sequence was found by PSORT; serine O-acetyltransferase 594743 cysE 988727 cysE Clostridium perfringens str. 13 serine O-acetyltransferase NP_561390.1 594105 D 195102 CDS NP_561391.1 18309457 988728 594774..595931 1 NC_003366.1 similar to pir:C70036 capsular polysaccharide biosynthesis homolog yveN from Bacillus subtilis (381 aa); 34.4% identity in 369 aa overlap; capsular polysaccharide biosynthesis protein 595931 988728 CPE0475 Clostridium perfringens str. 13 capsular polysaccharide biosynthesis protein NP_561391.1 594774 D 195102 CDS NP_561392.1 18309458 988729 595897..597003 1 NC_003366.1 similar to pir:F70441 capsular polysaccharide biosynthsis protein from Aquifex aeolicus (316 aa); 31.2% identity in 202 aa overlap; capsular polysaccharide biosynthesis protein 597003 988729 CPE0476 Clostridium perfringens str. 13 capsular polysaccharide biosynthesis protein NP_561392.1 595897 D 195102 CDS NP_561393.1 18309459 988730 597023..597907 1 NC_003366.1 similar to pir:S51262 probable beta-glycosyltransferase trsC from Yersinia enterocolitica (292 aa); 33.3% identity in 258 aa overlap. 1 transmembrane region was found by PSORT; beta-glycosyltransferase 597907 988730 CPE0477 Clostridium perfringens str. 13 beta-glycosyltransferase NP_561393.1 597023 D 195102 CDS NP_561394.1 18309460 988731 597933..599000 1 NC_003366.1 similar to pir:F70036 capsular polysaccharide biosynthesis homolog yveQ from Bacillus subtilis (367 aa); 34.6% identity in 286 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; capsular polysaccharide biosynthesis protein 599000 988731 CPE0478 Clostridium perfringens str. 13 capsular polysaccharide biosynthesis protein NP_561394.1 597933 D 195102 CDS NP_561395.1 18309461 988732 599019..600128 1 NC_003366.1 similar to pir:E70036 capsular polysaccharide biosynthesis homolog yveP from Bacillus subtilis (384 aa); 33.2% identity in 368 aa overlap. 2 transmembrane regions were found by PSORT.; capsular polysaccharide biosynthesis protein 600128 988732 CPE0479 Clostridium perfringens str. 13 capsular polysaccharide biosynthesis protein NP_561395.1 599019 D 195102 CDS NP_561396.1 18309462 988733 600146..601336 1 NC_003366.1 similar to pir:F70441 capsular polysaccharide biosynthsis protein from Aquifex aeolicus (316 aa); 30.8% identity in 201 aa overlap; capsular polysaccharide biosynthsis protein 601336 988733 CPE0480 Clostridium perfringens str. 13 capsular polysaccharide biosynthsis protein NP_561396.1 600146 D 195102 CDS NP_561397.1 18309463 988734 601394..602422 1 NC_003366.1 similar to pir:T50039 beta-1,4-galactosyltransferase cps14J from Streptococcus pneumoniae (318 aa); 34.5% identity in 310 aa overlap; beta-1,4-galactosyltransferase 602422 988734 CPE0481 Clostridium perfringens str. 13 beta-1,4-galactosyltransferase NP_561397.1 601394 D 195102 CDS NP_561398.1 18309464 988735 602440..603594 1 NC_003366.1 similar to pir:T50042 hypothetical protein tasA from Streptococcus pneumoniae (359 aa); 39.7% identity in 317 aa overlap; glycero-phosphotransferase 603594 988735 CPE0482 Clostridium perfringens str. 13 glycero-phosphotransferase NP_561398.1 602440 D 195102 CDS NP_561399.1 18309465 989352 603657..604079 1 NC_003366.1 similar to pir:A70419 glycerol-3-phosphate cytidyltransferase from Aquifex aeolicus (168 aa); 46% identity in 139 aa overlap; glycerol-3-phosphate cytidyltransferase 604079 989352 CPE0483 Clostridium perfringens str. 13 glycerol-3-phosphate cytidyltransferase NP_561399.1 603657 D 195102 CDS NP_561400.1 18309466 988737 604095..605087 1 NC_003366.1 similar to gp:AF155804_7 Cps1K from Streptococcus suis (279 aa); 42.4% identity in 231 aa overlap. N-terminal signal sequence was found by PSORT; capsular polysaccharide biosynthsis protein 605087 988737 CPE0484 Clostridium perfringens str. 13 capsular polysaccharide biosynthsis protein NP_561400.1 604095 D 195102 CDS NP_561401.1 18309467 988738 605106..606296 1 NC_003366.1 similar to pir:F70441 capsular polysaccharide biosynthsis protein from Aquifex aeolicus (316 aa); 34.4% identity in 221 aa overlap. N-terminal signal sequence was found by PSORT; capsular polysaccharide biosynthsis protein 606296 988738 CPE0485 Clostridium perfringens str. 13 capsular polysaccharide biosynthsis protein NP_561401.1 605106 D 195102 CDS NP_561402.1 18309468 988739 606317..607504 1 NC_003366.1 similar to gp:AF143904_1 galactosyl transferase from Actinobacillus pleuropneumoniae (383 aa); 26.5% identity in 351 aa overlap; galactosyl transferase 607504 988739 CPE0486 Clostridium perfringens str. 13 galactosyl transferase NP_561402.1 606317 D 195102 CDS NP_561403.1 18309469 988740 607514..608437 1 NC_003366.1 partially similar to pir:T48446 hypothetical protein T32M21.100 from Arabidopsis thaliana (764 aa); 33.6% identity in 238 aa overlap; hypothetical protein 608437 988740 CPE0487 Clostridium perfringens str. 13 hypothetical protein NP_561403.1 607514 D 195102 CDS NP_561404.1 18309470 988741 608456..609622 1 NC_003366.1 similar to pir:F70441 capsular polysaccharide biosynthsis protein from Aquifex aeolicus (316 aa); 31.3% identity in 179 aa overlap. 1 transmembrane region was found by PSORT; capsular polysaccharide biosynthsis protein 609622 988741 CPE0488 Clostridium perfringens str. 13 capsular polysaccharide biosynthsis protein NP_561404.1 608456 D 195102 CDS NP_561405.1 18309471 988742 609639..611177 1 NC_003366.1 similar to gp:AF048749_8 flippase from Bacteroides fragilis (511 aa); 26.8% identity in 459 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; flippase 611177 988742 CPE0489 Clostridium perfringens str. 13 flippase NP_561405.1 609639 D 195102 CDS NP_561406.1 18309472 988743 611190..612995 1 NC_003366.1 similar to gpu:AF244637_1 hypothetical protein from Carboxydothermus hydrogenoformans (162 aa); 33.9% identity in 109 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 612995 988743 CPE0490 Clostridium perfringens str. 13 hypothetical protein NP_561406.1 611190 D 195102 CDS NP_561407.1 18309473 988744 613798..614496 1 NC_003366.1 similar to pir:F70066 capsular polysaccharide biosynthesis homolog ywqC from Bacillus subtilis (248 aa); 31% identity in 232 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; capsular polysaccharide biosynthsis protein 614496 988744 CPE0491 Clostridium perfringens str. 13 capsular polysaccharide biosynthsis protein NP_561407.1 613798 D 195102 CDS NP_561408.1 18309474 988745 614510..615163 1 NC_003366.1 similar to pir:G70066 capsular polysaccharide biosynthesis homolog ywqD from Bacillus subtilis (237 aa); 44.1% identity in 213 aa overlap; capsular polysaccharide biosynthsis protein 615163 988745 CPE0492 Clostridium perfringens str. 13 capsular polysaccharide biosynthsis protein NP_561408.1 614510 D 195102 CDS NP_561409.1 18309475 988746 615362..616030 1 NC_003366.1 similar to C-terminal of prf:2512318F Cps2E protein from Streptococcus pneumoniae (455 aa); 47% identity in 198 aa overlap. 1 transmembrane region was found by PSORT; capsular polysaccharide biosynthsis protein 616030 988746 CPE0493 Clostridium perfringens str. 13 capsular polysaccharide biosynthsis protein NP_561409.1 615362 D 195102 CDS NP_561410.1 18309476 988747 616051..617397 1 NC_003366.1 similar to pir:G59102 hypothetical protein pXO1-95 from Bacillus anthracis virulence plasmid pXO1 (443 aa); 52.8% identity in 445 aa overlap.Also similar to pir:A70067 NDP-sugar dehydrogenase homolog ywqF from Bacillus subtilis; NDP-suger dehydrogenase 617397 988747 CPE0494 Clostridium perfringens str. 13 NDP-suger dehydrogenase NP_561410.1 616051 D 195102 CDS NP_561411.1 18309477 988748 617414..618460 1 NC_003366.1 similar to pir:H70352 mannose-6-phosphate isomerase/mannose-1-phosphate guanyl transferase from Aquifex aeolicus (453 aa); 37.2% identity in 339 aa overlap; mannose-1-phosphate guanylyltransferase 618460 988748 CPE0495 Clostridium perfringens str. 13 mannose-1-phosphate guanylyltransferase NP_561411.1 617414 D 195102 CDS NP_561412.1 18309478 988749 618495..619220 1 NC_003366.1 similar to prf:2518331F ManNAc transferase from Streptococcus pneumoniae (247 aa); 32.4% identity in 241 aa overlap; N-acetyl-mannosamine transferase 619220 988749 CPE0496 Clostridium perfringens str. 13 N-acetyl-mannosamine transferase NP_561412.1 618495 D 195102 CDS NP_561413.1 18309479 988750 619235..619669 1 NC_003366.1 similar to N-terminal of pir:B71691 capm protein (capM1) RP344 from Rickettsia prowazekii (389 aa); 26.8% identity in 138 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing); hypothetical protein 619669 988750 CPE0497 Clostridium perfringens str. 13 hypothetical protein NP_561413.1 619235 D 195102 CDS NP_561414.1 18309480 988751 619663..620319 1 NC_003366.1 similar to C-terminal of pir:F64500 probable hexosyltransferase (EC 2.4.1.-) MJ1607 from Methanococcus jannaschii (390 aa); 27.8% identity in 209 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing); hexosyltransferase 620319 988751 CPE0498 Clostridium perfringens str. 13 hexosyltransferase NP_561414.1 619663 D 195102 CDS NP_561415.1 18309481 988752 620321..621448 1 NC_003366.1 similar to C-terminal of pir:A75059 probable hexosyltransferase (EC 2.4.1.-) PAB0973 from Pyrococcus abyssi (strain Orsay) (390 aa); 39% identity in 141 aa overlap; hexosyltransferase 621448 988752 CPE0499 Clostridium perfringens str. 13 hexosyltransferase NP_561415.1 620321 D 195102 CDS NP_561416.1 18309482 988753 621466..622695 1 NC_003366.1 similar to sp:YC08_KLEPN HYPOTHETICAL 42.6 KDA PROTEIN IN CPS REGION (ORF8) from Klebsiella pneumoniae (373 aa); 28.6% identity in 399 aa overlap; hexosyltransferase 622695 988753 CPE0500 Clostridium perfringens str. 13 hexosyltransferase NP_561416.1 621466 D 195102 CDS NP_561417.1 18309483 988754 622784..623764 1 NC_003366.1 similar to gp:AF155804_7 Cps1K from Streptococcus suis (279 aa); 39.7% identity in 229 aa overlap; capsular polysaccharide biosynthsis protein 623764 988754 CPE0501 Clostridium perfringens str. 13 capsular polysaccharide biosynthsis protein NP_561417.1 622784 D 195102 CDS NP_561418.1 18309484 988755 623775..624878 1 NC_003366.1 similar to gpu:AP001519_178 lipopolysaccharide biosynthesis from Bacillus halodurans (373 aa); 28.6% identity in 360 aa overlap; lipopolysaccharide biosynthesis protein 624878 988755 CPE0502 Clostridium perfringens str. 13 lipopolysaccharide biosynthesis protein NP_561418.1 623775 D 195102 CDS NP_561419.1 18309485 988756 624883..626367 1 NC_003366.1 no significant homology. N-terminal signal sequence and 12 transmembrane regions were found by PSORT.; hypothetical protein 626367 988756 CPE0503 Clostridium perfringens str. 13 hypothetical protein NP_561419.1 624883 D 195102 CDS NP_561420.1 18309486 988757 626387..627433 1 NC_003366.1 similar to pir:G70036 spore coat polysaccharide biosynthesis homolog yveR from Bacillus subtilis (344 aa); 32.8% identity in 262 aa overlap. 1 transmembrane region was found by PSORT; spore coat polysaccharide biosynthesis protein 627433 988757 CPE0504 Clostridium perfringens str. 13 spore coat polysaccharide biosynthesis protein NP_561420.1 626387 D 195102 CDS NP_561421.1 18309487 988758 627408..628928 1 NC_003366.1 similar to gp:AF048749_8 flippase from Bacteroides fragilis (511 aa); 28% identity in 443 aa overlap. N-terminal signal sequence and 12 transmembrane regions were found by PSORT.; flippase 628928 988758 CPE0505 Clostridium perfringens str. 13 flippase NP_561421.1 627408 D 195102 CDS NP_561422.1 18309488 988759 629121..630041 1 NC_003366.1 similar to gpu:AP001519_167 UTP-glucose-1-phosphate uridylyltransferase from Bacillus halodurans (297 aa); 60.1% identity in 288 aa overlap. N-terminal signal sequence was found by PSORT; UTP-glucose-1-phosphate uridylyltransferase 630041 galF 988759 galF Clostridium perfringens str. 13 UTP-glucose-1-phosphate uridylyltransferase NP_561422.1 629121 D 195102 CDS NP_561423.1 18309489 988760 630408..631055 1 NC_003366.1 no significant homology.; RNA polymerase sigma factor 631055 988760 CPE0507 Clostridium perfringens str. 13 RNA polymerase sigma factor NP_561423.1 630408 D 195102 CDS NP_561424.1 18309490 988761 631476..633719 1 NC_003366.1 no significant homology.; hypothetical protein 633719 988761 CPE0508 Clostridium perfringens str. 13 hypothetical protein NP_561424.1 631476 D 195102 CDS NP_561425.1 18309491 988762 633797..634813 1 NC_003366.1 similar to sp:GALE_BACSU UDP-GLUCOSE 4-EPIMERASE (EC 5.1.3.2) (GALACTOWALDENASE) (UDP- GALACTOSE 4-EPIMERASE) from Bacillus subtilis (339 aa); 58.6% identity in 338 aa overlap; UDP-glucose 4-epimerase 634813 galE 988762 galE Clostridium perfringens str. 13 UDP-glucose 4-epimerase NP_561425.1 633797 D 195102 CDS NP_561426.1 18309492 988763 635095..636039 1 NC_003366.1 similar to gpu:AP001519_167 UTP-glucose-1-phosphate uridylyltransferase from Bacillus halodurans (297 aa); 60.6% identity in 284 aa overlap. N-terminal signal sequence was found by PSORT; UTP-glucose-1-phosphate uridylyltransferase 636039 galF 988763 galF Clostridium perfringens str. 13 UTP-glucose-1-phosphate uridylyltransferase NP_561426.1 635095 D 195102 CDS NP_561427.1 18309493 988764 636364..637056 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 637056 988764 CPE0511 Clostridium perfringens str. 13 hypothetical protein NP_561427.1 636364 D 195102 CDS NP_561428.1 18309494 988766 637566..639770 1 NC_003366.1 similar to gp:AF130985_1 alpha-galactosidase (EC 3.2.1.22) AgaN from Bacillus stearothermophilus (729 aa); 60.4% identity in 720 aa overlap. N-terminal signal sequence was found by PSORT; alpha-galactosidase 639770 agaN 988766 agaN Clostridium perfringens str. 13 alpha-galactosidase NP_561428.1 637566 D 195102 CDS NP_561429.1 18309495 988767 complement(639916..640665) 1 NC_003366.1 similar to gpu:AP001518_125 BH3294 gene product from Bacillus halodurans (254 aa); 35.4% identity in 209 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 640665 988767 CPE0513 Clostridium perfringens str. 13 hypothetical protein NP_561429.1 639916 R 195102 CDS NP_561430.1 18309496 988768 640904..641428 1 NC_003366.1 similar to gp:AF085497_1 signal peptidase type I from Bacillus amyloliquefaciens (194 aa); 37.2% identity in 137 aa overlap; signal peptidase type I 641428 988768 CPE0514 Clostridium perfringens str. 13 signal peptidase type I NP_561430.1 640904 D 195102 CDS NP_561431.1 18309497 988769 641482..642117 1 NC_003366.1 some similarity to N-terminal of gpu:AP001514_135 spore coat-associated protein from Bacillus halodurans (210 aa); 27.2% identity in 103 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 642117 988769 CPE0515 Clostridium perfringens str. 13 hypothetical protein NP_561431.1 641482 D 195102 CDS NP_561432.1 18309498 988770 642165..642890 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 642890 988770 CPE0516 Clostridium perfringens str. 13 hypothetical protein NP_561432.1 642165 D 195102 CDS NP_561433.1 18309499 988771 642907..644751 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; von Willebrand factor A 644751 988771 CPE0517 Clostridium perfringens str. 13 von Willebrand factor A NP_561433.1 642907 D 195102 CDS NP_561434.1 18309500 988772 644991..645707 1 NC_003366.1 similar to pir:S60139 virR protein from Clostridium perfringens (252 aa); 31.9% identity in 238 aa overlap; DNA-binding response regulator 645707 988772 CPE0518 Clostridium perfringens str. 13 DNA-binding response regulator NP_561434.1 644991 D 195102 CDS NP_561435.1 18309501 988773 645712..647007 1 NC_003366.1 similar to pir:C55521 virS protein from Clostridium perfringens (440 aa); 32.5% identity in 234 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; sensor histidine kinase 647007 988773 CPE0519 Clostridium perfringens str. 13 sensor histidine kinase NP_561435.1 645712 D 195102 CDS NP_561436.1 18309502 988774 647185..647991 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 647991 988774 CPE0520 Clostridium perfringens str. 13 hypothetical protein NP_561436.1 647185 D 195102 CDS NP_561437.1 18309503 988775 648362..648808 1 NC_003366.1 similar to C-terminal of gpu:AP001507_220 BH0220 gene product from Bacillus halodurans (701 aa); 31.7% identity in 142 aa overlap; hypothetical protein 648808 988775 CPE0521 Clostridium perfringens str. 13 hypothetical protein NP_561437.1 648362 D 195102 CDS NP_561438.1 18309504 988776 648983..649255 1 NC_003366.1 similar to gpu:AP001507_222 BH0222 gene product from Bacillus halodurans (89 aa); 41.7% identity in 84 aa overlap; hypothetical protein 649255 988776 CPE0522 Clostridium perfringens str. 13 hypothetical protein NP_561438.1 648983 D 195102 CDS NP_561439.1 18309505 988777 649296..650567 1 NC_003366.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 650567 ulaA 988777 ulaA Clostridium perfringens str. 13 PTS system ascorbate-specific transporter subunit IIC NP_561439.1 649296 D 195102 CDS NP_561440.1 18309506 988778 650923..651717 1 NC_003366.1 similar to gpu:AP001516_88 BH2659 gene product from Bacillus halodurans (257 aa); 29.1% identity in 258 aa overlap; HAD hydrolase 651717 988778 CPE0524 Clostridium perfringens str. 13 HAD hydrolase NP_561440.1 650923 D 195102 CDS NP_561441.1 18309507 988779 complement(651851..652297) 1 NC_003366.1 similar to gpu:AP001517_194 transcriptional regulator from Bacillus halodurans (151 aa); 24.4% identity in 119 aa overlap; MarR family; MarR family transcriptional regulator 652297 988779 CPE0525 Clostridium perfringens str. 13 MarR family transcriptional regulator NP_561441.1 651851 R 195102 CDS NP_561442.1 18309508 988780 652622..654919 1 NC_003366.1 similar to gp:SC7A8_2 ABC transporter from Streptomyces coelicolor A3(2) (577 aa); 42% identity in 531 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 654919 988780 CPE0526 Clostridium perfringens str. 13 ABC transporter NP_561442.1 652622 D 195102 CDS NP_561443.1 18309509 988781 654912..656768 1 NC_003366.1 similar to gp:SC7A8_3 ABC transporter from Streptomyces coelicolor A3(2) (642 aa); 49.2% identity in 594 aa overlap. 5 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 656768 988781 CPE0527 Clostridium perfringens str. 13 ABC transporter NP_561443.1 654912 D 195102 CDS NP_561444.1 18309510 988782 657262..658143 1 NC_003366.1 no significant homology.; hypothetical protein 658143 988782 CPE0528 Clostridium perfringens str. 13 hypothetical protein NP_561444.1 657262 D 195102 CDS NP_561445.1 18309511 988783 658398..659447 1 NC_003366.1 similar to gp:AF132735_8 malate permease from Clostridium cellulovorans (290 aa); 24% identity in 254 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; transporter, auxin efflux carrier family 659447 988783 CPE0529 Clostridium perfringens str. 13 transporter, auxin efflux carrier family NP_561445.1 658398 D 195102 CDS NP_561446.1 18309512 988784 659756..660754 1 NC_003366.1 Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes; D-lactate dehydrogenase 660754 ldhD 988784 ldhD Clostridium perfringens str. 13 D-lactate dehydrogenase NP_561446.1 659756 D 195102 CDS NP_561447.1 18309513 988785 661050..662600 1 NC_003366.1 similar to pir:A70009 two-component sensor histidine kinase homolog yufL from Bacillus subtilis (533 aa); 28.7% identity in 492 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; sensor histidine kinase 662600 988785 CPE0531 Clostridium perfringens str. 13 sensor histidine kinase NP_561447.1 661050 D 195102 CDS NP_561448.1 18309514 988786 662600..663268 1 NC_003366.1 similar to pir:B70009 two-component response regulator [YufL] homolog yufM from Bacillus subtilis (235 aa); 38.2% identity in 217 aa overlap; two-component response regulator 663268 988786 CPE0532 Clostridium perfringens str. 13 two-component response regulator NP_561448.1 662600 D 195102 CDS NP_561449.1 18309515 988787 663349..663528 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 663528 988787 CPE0533 Clostridium perfringens str. 13 hypothetical protein NP_561449.1 663349 D 195102 CDS NP_561450.1 18309516 988788 663686..664216 1 NC_003366.1 no significant homology.; hypothetical protein 664216 988788 CPE0534 Clostridium perfringens str. 13 hypothetical protein NP_561450.1 663686 D 195102 CDS NP_561451.1 18309517 988789 665353..665994 1 NC_003366.1 similar to pir:F81434 probable integral membrane protein Cj0167c from Campylobacter jejuni (strain NCTC 11168) (187 aa); 43.5% identity in 186 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 665994 988789 CPE0535 Clostridium perfringens str. 13 hypothetical protein NP_561451.1 665353 D 195102 CDS NP_561452.1 18309518 988790 666446..667372 1 NC_003366.1 similar to pir:C64895 hypothetical protein b1432 from Escherichia coli (402 aa); 27.9% identity in 305 aa overlap. Also similar to pir:C72305 transposase, IS605-TnpB family from Thermotoga maritima (strain MSB8); transposase 667372 988790 CPE0536 Clostridium perfringens str. 13 transposase NP_561452.1 666446 D 195102 CDS NP_561453.1 18309519 988791 667372..667644 1 NC_003366.1 similar to gp:CPIS1136_1 C.perfringens IS1136 DNA from Clostridium perfringens (122 aa); 59.3% identity in 91 aa overlap; IS1136; transposase 667644 988791 CPE0537 Clostridium perfringens str. 13 transposase NP_561453.1 667372 D 195102 CDS NP_561454.1 18309520 988792 667806..668219 1 NC_003366.1 no significant homology.; hypothetical protein 668219 988792 CPE0538 Clostridium perfringens str. 13 hypothetical protein NP_561454.1 667806 D 195102 CDS NP_561455.1 18309521 988793 668530..669645 1 NC_003366.1 similar to sp:4HDB_CLOKL NAD-DEPENDENT 4-HYDROXYBUTYRATE DEHYDROGENASE (EC 1.1.1.61) (4HBD from Clostridium kluyveri (371 aa); 47.2% identity in 371 aa overlap. 1 transmembrane region was found by PSORT; NAD-dependent 4-hydroxybutyrate dehydrogenase 669645 988793 CPE0539 Clostridium perfringens str. 13 NAD-dependent 4-hydroxybutyrate dehydrogenase NP_561455.1 668530 D 195102 CDS NP_561456.1 18309522 988794 669654..669842 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 669842 988794 CPE0540 Clostridium perfringens str. 13 hypothetical protein NP_561456.1 669654 D 195102 CDS NP_561457.1 18309523 988795 669878..670558 1 NC_003366.1 similar to pir:A75167 hypothetical protein PAB0333 from Pyrococcus abyssi (strain Orsay) (259 aa); 24.4% identity in 205 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; TrkA domain-containing protein 670558 988795 CPE0541 Clostridium perfringens str. 13 TrkA domain-containing protein NP_561457.1 669878 D 195102 CDS NP_561458.1 18309524 988796 complement(670673..671125) 1 NC_003366.1 no significant homology.; MarR family transcriptional regulator 671125 988796 CPE0542 Clostridium perfringens str. 13 MarR family transcriptional regulator NP_561458.1 670673 R 195102 CDS NP_561459.1 18309525 988797 671379..672512 1 NC_003366.1 similar to gp:AF051356_3 permease from Streptococcus mutans (364 aa); 27.9% identity in 319 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; permease 672512 988797 CPE0543 Clostridium perfringens str. 13 permease NP_561459.1 671379 D 195102 CDS NP_561460.1 18309526 988798 672917..674308 1 NC_003366.1 similar to gpu:AE004180_4 proton/peptide symporter family protein from Vibrio cholerae (514 aa); 33.2% identity in 407 aa overlap. 8 transmembrane regions were found by PSORT.; proton/peptide symporter 674308 988798 CPE0544 Clostridium perfringens str. 13 proton/peptide symporter NP_561460.1 672917 D 195102 CDS NP_561461.1 18309527 988799 complement(674471..674686) 1 NC_003366.1 no significant homology.; hypothetical protein 674686 988799 CPE0545 Clostridium perfringens str. 13 hypothetical protein NP_561461.1 674471 R 195102 CDS NP_561462.1 18309528 988800 complement(674700..674930) 1 NC_003366.1 no significant homology.; hypothetical protein 674930 988800 CPE0546 Clostridium perfringens str. 13 hypothetical protein NP_561462.1 674700 R 195102 CDS NP_561463.1 18309529 988801 675180..676730 1 NC_003366.1 similar to C-terminal of pir:C70319 nitrite reductase (NAD(P)H) large subunit from Aquifex aeolicus (1002 aa); 24.8% identity in 452 aa overlap; nitrite/sulfite reductase-like protein 676730 988801 CPE0547 Clostridium perfringens str. 13 nitrite/sulfite reductase-like protein NP_561463.1 675180 D 195102 CDS NP_561464.1 18309530 988802 677043..677858 1 NC_003366.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 677858 speD 988802 speD Clostridium perfringens str. 13 S-adenosylmethionine decarboxylase NP_561464.1 677043 D 195102 CDS NP_561465.1 18309531 988803 677876..679330 1 NC_003366.1 similar to sp:DCLY_BACSU LYSINE DECARBOXYLASE (EC 4.1.1.18) (LDC) from Bacillus subtilis (490 aa); 44.1% identity in 479 aa overlap. 1 transmembrane region was found by PSORT; Orn/Lys/Arg decarboxylase 679330 dclY 988803 dclY Clostridium perfringens str. 13 Orn/Lys/Arg decarboxylase NP_561465.1 677876 D 195102 CDS NP_561466.1 18309532 988804 679345..680196 1 NC_003366.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 680196 speE 988804 speE Clostridium perfringens str. 13 spermidine synthase NP_561466.1 679345 D 195102 CDS NP_561467.1 18309533 988805 680183..681040 1 NC_003366.1 similar to pir:H70057 agmatinase homolog ywhG from Bacillus subtilis (290 aa); 48% identity in 271 aa overlap; agmatinase 681040 speB 988805 speB Clostridium perfringens str. 13 agmatinase NP_561467.1 680183 D 195102 CDS NP_561468.1 18309534 988806 complement(681358..681621) 1 NC_003366.1 similar to pir:G69983 hypothetical protein ysdA from Bacillus subtilis (89 aa); 46.9% identity in 64 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 681621 988806 CPE0552 Clostridium perfringens str. 13 hypothetical protein NP_561468.1 681358 R 195102 CDS NP_561469.1 18309535 988807 681830..685351 1 NC_003366.1 similar to sp:NANH_CLOSE SIALIDASE PRECURSOR (EC 3.2.1.18) (NEURAMINIDASE) from Clostridium septicum (1014 aa); 50.9% identity in 953 aa overlap. N-terminal signal sequence was found by PSORT; exo-alpha-sialidase 685351 nanJ 988807 nanJ Clostridium perfringens str. 13 exo-alpha-sialidase NP_561469.1 681830 D 195102 CDS NP_561470.1 18309536 988808 685497..686138 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 686138 988808 CPE0554 Clostridium perfringens str. 13 hypothetical protein NP_561470.1 685497 D 195102 CDS NP_561471.1 18309537 988809 complement(686246..688915) 1 NC_003366.1 similar to sp:ATCU_BACSU POTENTIAL COPPER-TRANSPORTING ATPASE (EC 3.6.1.36) from Bacillus subtilis (803 aa); 51.6% identity in 808 aa overlap. 7 transmembrane regions were found by PSORT.; copper-translocating P-type ATPase 688915 988809 CPE0555 Clostridium perfringens str. 13 copper-translocating P-type ATPase NP_561471.1 686246 R 195102 CDS NP_561472.1 18309538 988810 689207..689863 1 NC_003366.1 similar to gp:AF112858_1 NAD(P)H dehydrogenase from Bacillus stearothermophilus (211 aa); 35.5% identity in 186 aa overlap; NAD(P)H dehydrogenase 689863 988810 CPE0556 Clostridium perfringens str. 13 NAD(P)H dehydrogenase NP_561472.1 689207 D 195102 CDS NP_561473.1 18309539 988811 691147..692283 1 NC_003366.1 similar to gpu:AF249729_1 ATPase OpuCA from Listeria monocytogenes (397 aa); 47.5% identity in 354 aa overlap; ATP-binding protein; glycine betaine/carnitine/choline ABC transporter 692283 988811 CPE0557 Clostridium perfringens str. 13 glycine betaine/carnitine/choline ABC transporter NP_561473.1 691147 D 195102 CDS NP_561474.1 18309540 988812 692276..693829 1 NC_003366.1 similar to pir:T44634 choline transporter from Streptococcus pneumoniae (506 aa); 34.7% identity in 502 aa overlap. 7 transmembrane regions were found by PSORT.; osmoprotectant-binding protein; glycine betaine/carnitine/choline ABC transporter 693829 988812 CPE0558 Clostridium perfringens str. 13 glycine betaine/carnitine/choline ABC transporter NP_561474.1 692276 D 195102 CDS NP_561475.1 18309541 988813 694087..694662 1 NC_003366.1 similar to sp:SIGV_BACSU RNA POLYMERASE SIGMA FACTOR SIGV from Bacillus subtilis (166 aa); 34.1% identity in 138 aa overlap; RNA polymerase sigma-70 factor 694662 sigV 988813 sigV Clostridium perfringens str. 13 RNA polymerase sigma-70 factor NP_561475.1 694087 D 195102 CDS NP_561476.1 18309542 988814 694655..695743 1 NC_003366.1 no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 695743 988814 CPE0560 Clostridium perfringens str. 13 hypothetical protein NP_561476.1 694655 D 195102 CDS NP_561477.1 18309543 988815 696091..697512 1 NC_003366.1 similar to gpu:AE004175_1 PTS system, trehalose-specific IIBC component from Vibrio cholerae (478 aa); 52.9% identity in 367 aa overlap. 9 transmembrane regions were found by PSORT.; trehalose-specific IIBC component; PTS system transporter 697512 988815 CPE0561 Clostridium perfringens str. 13 PTS system transporter NP_561477.1 696091 D 195102 CDS NP_561478.1 18309544 988816 697716..699383 1 NC_003366.1 similar to gp:AF216220_1 alpha-glucosidase from Bacillus sp. DG0303 (562 aa); 62.5% identity in 552 aa overlap; alpha-glucosidase 699383 988816 CPE0562 Clostridium perfringens str. 13 alpha-glucosidase NP_561478.1 697716 D 195102 CDS NP_561479.1 18309545 988817 699647..700354 1 NC_003366.1 similar to sp:TRER_BACSU TREHALOSE OPERON TRANSCRIPTIONAL REPRESSOR from Bacillus subtilis (238 aa); 54.5% identity in 233 aa overlap; transcriptional regulator 700354 treR 988817 treR Clostridium perfringens str. 13 transcriptional regulator NP_561479.1 699647 D 195102 CDS NP_561480.1 18309546 988818 complement(700806..702992) 1 NC_003366.1 similar to gpu:AP001516_1 stage V sporulation protein (soprulation specific penicillin-binding protein) (spore cortex) from Bacillus halodurans (644 aa); 38.6% identity in 360 aa overlap. N-terminal signal sequence was found by PSORT; stage V sporulation protein D 702992 spoVD 988818 spoVD Clostridium perfringens str. 13 stage V sporulation protein D NP_561480.1 700806 R 195102 CDS NP_561481.1 18309547 988819 703337..704005 1 NC_003366.1 similar to pir:MUBPA7 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) from phage T7 (151 aa); 38.7% identity in 119 aa overlap. 1 transmembrane region was found by PSORT; phage related; N-acetylmuramoyl-L-alanine amidase 704005 988819 CPE0565 Clostridium perfringens str. 13 N-acetylmuramoyl-L-alanine amidase NP_561481.1 703337 D 195102 CDS NP_561482.1 18309548 988820 704572..705672 1 NC_003366.1 similar to sp:RIBD_ACTPL RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD [INCLUDES: DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE (EC 3.5.4.26) (RIBOFLAVIN-SPECIFIC DEAMINASE) from Actinobacillus pleuropneumoniae (376 aa); 44.8% identity in 357 aa overlap; riboflavin biosynthesis protein RibD 705672 ribB 988820 ribB Clostridium perfringens str. 13 riboflavin biosynthesis protein RibD NP_561482.1 704572 D 195102 CDS NP_561483.1 18309549 988821 705691..706344 1 NC_003366.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 706344 risA 988821 risA Clostridium perfringens str. 13 riboflavin synthase subunit alpha NP_561483.1 705691 D 195102 CDS NP_561484.1 18309550 988822 706550..707695 1 NC_003366.1 similar to gpu:AP001512_143 GTP cyclohydrolase II / 3, 4-dihydroxy-2-butanone 4-phosphate synthase from Bacillus halodurans (404 aa); 63.1% identity in 396 aa overlap; riboflavin biosynthesis protein RibA 707695 ribA 988822 ribA Clostridium perfringens str. 13 riboflavin biosynthesis protein RibA NP_561484.1 706550 D 195102 CDS NP_561485.1 18309551 988823 707810..708271 1 NC_003366.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 708271 ribH 988823 ribH Clostridium perfringens str. 13 6,7-dimethyl-8-ribityllumazine synthase NP_561485.1 707810 D 195102 CDS NP_561486.1 18309552 988824 complement(708394..709266) 1 NC_003366.1 similar to C-terminal of gp:AF154013_1 surface protein PspC from Streptococcus pneumoniae (730 aa); 52.5% identity in 217 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 709266 988824 CPE0570 Clostridium perfringens str. 13 hypothetical protein NP_561486.1 708394 R 195102 CDS NP_561487.1 18309553 988825 complement(709370..709777) 1 NC_003366.1 similar to sp:YUGU_BACSU HYPOTHETICAL 16.3 KDA PROTEIN IN TGL-PGI INTERGENIC REGION from Bacillus subtilis (142 aa); 52.8% identity in 125 aa overlap; hypothetical protein 709777 988825 CPE0571 Clostridium perfringens str. 13 hypothetical protein NP_561487.1 709370 R 195102 CDS NP_561488.1 18309554 988826 710160..710423 1 NC_003366.1 similar to pir:F72407 hypothetical protein from Thermotoga maritima (strain MSB8) (92 aa); 43.8% identity in 80 aa overlap; hypothetical protein 710423 988826 CPE0572 Clostridium perfringens str. 13 hypothetical protein NP_561488.1 710160 D 195102 CDS NP_561489.1 18309555 988827 710699..712918 1 NC_003366.1 no significant homology.; hypothetical protein 712918 988827 CPE0573 Clostridium perfringens str. 13 hypothetical protein NP_561489.1 710699 D 195102 CDS NP_561490.1 18309556 988828 713265..714854 1 NC_003366.1 similar to pir:D69796 two-component sensor histidine kinase homolog yesM from Bacillus subtilis (577 aa); 34.3% identity in 327 aa overlap. 1 transmembrane region was found by PSORT; sensor histidine kinase 714854 988828 CPE0574 Clostridium perfringens str. 13 sensor histidine kinase NP_561490.1 713265 D 195102 CDS NP_561491.1 18309557 988829 714866..716455 1 NC_003366.1 similar to gpu:AP001511_12 BH1123 gene product from Bacillus halodurans (526 aa); 25% identity in 516 aa overlap. Also similar to pir:E69796 two-component response regulator [YesM] homolog yesN (368 aa) from Bacillus subtilis; AraC family transcriptional regulator 716455 988829 CPE0575 Clostridium perfringens str. 13 AraC family transcriptional regulator NP_561491.1 714866 D 195102 CDS NP_561492.1 18309558 988830 716608..717993 1 NC_003366.1 similar to pir:T35670 hypothetical protein SC7B7.02 SC7B7.02 from Streptomyces coelicolor (469 aa); 28.7% identity in 397 aa overlap. N-terminal signal sequence was found by PSORT; binding protein; ABC transporter 717993 988830 CPE0576 Clostridium perfringens str. 13 ABC transporter NP_561492.1 716608 D 195102 CDS NP_561493.1 18309559 988831 718072..719007 1 NC_003366.1 similar to sp:YURN_BACSU HYPOTHETICAL ABC TRANSPORTER PERMEase YURN from Bacillus subtilis (292 aa); 35.6% identity in 267 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permease; ABC transporter permease 719007 988831 CPE0577 Clostridium perfringens str. 13 ABC transporter permease NP_561493.1 718072 D 195102 CDS NP_561494.1 18309560 988832 719139..719882 1 NC_003366.1 similar to pir:T35672 probable transmembrane transport protein from Streptomyces coelicolor (302 aa); 37% identity in 246 aa overlap. 5 transmembrane regions were found by PSORT.; permease; ABC transporter 719882 988832 CPE0578 Clostridium perfringens str. 13 ABC transporter NP_561494.1 719139 D 195102 CDS NP_561495.1 18309561 988833 720118..720813 1 NC_003366.1 similar to sp:YDJZ_ECOLI HYPOTHETICAL 26.2 KDA PROTEIN IN XTHA-GDHA INTERGENIC REGION from Escherichia coli (235 aa); 55.7% identity in 219 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; DedA family protein 720813 988833 CPE0579 Clostridium perfringens str. 13 DedA family protein NP_561495.1 720118 D 195102 CDS NP_561496.1 18309562 988834 720785..721915 1 NC_003366.1 similar to pir:B69313 iron-sulfur binding reductase homolog from Archaeoglobus fulgidus (366 aa); 28% identity in 322 aa overlap; iron-sulfur binding reductase 721915 988834 CPE0580 Clostridium perfringens str. 13 iron-sulfur binding reductase NP_561496.1 720785 D 195102 CDS NP_561497.1 18309563 988835 722078..722665 1 NC_003366.1 similar to sp:Y460_PYRHO HYPOTHETICAL PROTEIN PH0460 from Pyrococcus horikoshii (188 aa); 38.8% identity in 103 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 722665 988835 CPE0581 Clostridium perfringens str. 13 hypothetical protein NP_561497.1 722078 D 195102 CDS NP_561498.1 18309564 988836 722951..723583 1 NC_003366.1 similar to gp:SCD84_4 hypothetical protein SCD84.04 from Streptomyces coelicolor A3(2) (206 aa); 32.9% identity in 207 aa overlap; hypothetical protein 723583 988836 CPE0582 Clostridium perfringens str. 13 hypothetical protein NP_561498.1 722951 D 195102 CDS NP_561499.1 18309565 988837 723576..724574 1 NC_003366.1 similar to gp:SCD84_5 phosphate transport protein from Streptomyces coelicolor A3(2) (332 aa); 44.1% identity in 306 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; phosphate ABC transporter permease 724574 988837 CPE0583 Clostridium perfringens str. 13 phosphate ABC transporter permease NP_561499.1 723576 D 195102 CDS NP_561500.1 18309566 988838 complement(725006..726898) 1 NC_003366.1 similar to pir:H69626 PTS fructose-specific enzyme IIBC component fruA from Bacillus subtilis (635 aa); 57.1% identity in 627 aa overlap. 7 transmembrane regions were found by PSORT.; fructose-specific enzyme IIBC component; PTS system transporter 726898 988838 CPE0584 Clostridium perfringens str. 13 PTS system transporter NP_561500.1 725006 R 195102 CDS NP_561501.1 18309567 988839 complement(726902..727822) 1 NC_003366.1 similar to sp:K1PF_BACSU 1-PHOSPHOFRUCTOKINASE (EC 2.7.1.56) (FRUCTOSE 1-PHOSPHATE KINASE) from Bacillus subtilis (303 aa); 49.3% identity in 302 aa overlap; 1-phosphofructokinase 727822 fruB 988839 fruB Clostridium perfringens str. 13 1-phosphofructokinase NP_561501.1 726902 R 195102 CDS NP_561502.1 18309568 988840 complement(727822..728568) 1 NC_003366.1 similar to pir:B69627 transcription repressor of fructose operon fruR from Bacillus subtilis (251 aa); 48.4% identity in 246 aa overlap; transcriptional regulator 728568 fruR 988840 fruR Clostridium perfringens str. 13 transcriptional regulator NP_561502.1 727822 R 195102 CDS NP_561503.1 18309569 988841 728859..729182 1 NC_003366.1 no significant homology.; hypothetical protein 729182 988841 CPE0587 Clostridium perfringens str. 13 hypothetical protein NP_561503.1 728859 D 195102 CDS NP_561504.1 18309570 988842 complement(729363..730463) 1 NC_003366.1 similar to gp:SPDACAO_1 membrane protein from Streptococcus pneumoniae (369 aa); 29.6% identity in 358 aa overlap; permease 730463 988842 CPE0588 Clostridium perfringens str. 13 permease NP_561504.1 729363 R 195102 CDS NP_561505.1 18309571 988843 730721..731380 1 NC_003366.1 similar to pir:C72372 pyrazinamidase/nicotinamidase-related protein from Thermotoga maritima (strain MSB8) (214 aa); 30.2% identity in 159 aa overlap. 1 transmembrane region was found by PSORT; isochorismatase 731380 988843 CPE0589 Clostridium perfringens str. 13 isochorismatase NP_561505.1 730721 D 195102 CDS NP_561506.1 18309572 988844 731757..733070 1 NC_003366.1 similar to pir:T44296 hypothetical protein from Bacillus halodurans (424 aa); 38.3% identity in 420 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 733070 988844 CPE0590 Clostridium perfringens str. 13 hypothetical protein NP_561506.1 731757 D 195102 CDS NP_561507.1 18309573 988845 733374..734297 1 NC_003366.1 similar to gpu:AP001516_56 glutaminase from Bacillus halodurans (308 aa); 44.3% identity in 305 aa overlap. 1 transmembrane region was found by PSORT; glutaminase 734297 988845 CPE0591 Clostridium perfringens str. 13 glutaminase NP_561507.1 733374 D 195102 CDS NP_561508.1 18309574 988846 734586..735311 1 NC_003366.1 similar to pir:G71281 probable Mg2+ transport protein (mgtC) from Treponema pallidum (224 aa); 29.6% identity in 213 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; Mg2+ transporter 735311 988846 CPE0592 Clostridium perfringens str. 13 Mg2+ transporter NP_561508.1 734586 D 195102 CDS NP_561509.1 18309575 988851 741120..741812 1 NC_003366.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 741812 sfsA 988851 sfsA Clostridium perfringens str. 13 sugar fermentation stimulation protein A NP_561509.1 741120 D 195102 CDS NP_561510.1 18309576 988852 742291..742764 1 NC_003366.1 similar to C-terminal of gpu:AE004122_1 MutT/nudix family protein from Vibrio cholerae (269 aa); 32.1% identity in 162 aa overlap; NUDIX family hydrolase 742764 988852 CPE0594 Clostridium perfringens str. 13 NUDIX family hydrolase NP_561510.1 742291 D 195102 CDS NP_561511.1 18309577 988853 743070..744470 1 NC_003366.1 similar to sp:DCDA_BACSU DIAMINOPIMELATE DECARBOXYLASE (EC 4.1.1.20) (DAP DECARBOXYLASE) from Bacillus subtilis (441 aa); 50.5% identity in 422 aa overlap; diaminopimelate decarboxylase 744470 lysA 988853 lysA Clostridium perfringens str. 13 diaminopimelate decarboxylase NP_561511.1 743070 D 195102 CDS NP_561512.1 18309578 988854 744879..745145 1 NC_003366.1 no significant homology.; hypothetical protein 745145 988854 CPE0596 Clostridium perfringens str. 13 hypothetical protein NP_561512.1 744879 D 195102 CDS NP_561513.1 18309579 988855 745148..745678 1 NC_003366.1 similar to sp:LEP_PHOLA SIGNAL PEPTIDASE I (EC 3.4.21.89) (SPASE I) (LEADER PEPTIDASE I) from Phormidium laminosum (203 aa); 47.4% identity in 135 aa overlap. N-terminal signal sequence was found by PSORT; signal peptidase type I 745678 sipS 988855 sipS Clostridium perfringens str. 13 signal peptidase type I NP_561513.1 745148 D 195102 CDS NP_561514.1 18309580 988856 745703..747856 1 NC_003366.1 similar to sp:FTH3_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 3 (EC 3.4.24.-) from Synechocystis sp. (strain PCC 6803) (628 aa); 53.1% identity in 567 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; ATP-dependent metalloprotease FtsH 747856 ftsH 988856 ftsH Clostridium perfringens str. 13 ATP-dependent metalloprotease FtsH NP_561514.1 745703 D 195102 CDS NP_561515.1 18309581 988857 748076..750196 1 NC_003366.1 similar to pir:H70040 hypothetical protein yvgS from Bacillus subtilis (774 aa); 30.2% identity in 660 aa overlap; hypothetical protein 750196 988857 CPE0599 Clostridium perfringens str. 13 hypothetical protein NP_561515.1 748076 D 195102 CDS NP_561516.1 18309582 988858 750652..751488 1 NC_003366.1 similar to sp:YQIX_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER EXTRACELLULAR BINDING PROTEIN YQIX PRECURSOR from Bacillus subtilis (255 aa); 38.3% identity in 256 aa overlap; binding protein; amino acid ABC transporter 751488 988858 CPE0600 Clostridium perfringens str. 13 amino acid ABC transporter NP_561516.1 750652 D 195102 CDS NP_561517.1 18309583 988859 751519..752190 1 NC_003366.1 similar to pir:A72357 amino acid ABC transporter, permease from Thermotoga maritima (strain MSB8) (216 aa); 44.4% identity in 214 aa overlap. 3 transmembrane regions were found by PSORT.; permease; amino acid ABC transporter 752190 988859 CPE0601 Clostridium perfringens str. 13 amino acid ABC transporter NP_561517.1 751519 D 195102 CDS NP_561518.1 18309584 988860 752187..752909 1 NC_003366.1 similar to gpu:AP001512_50 ABC transporter (ATP-binding protein) from Bacillus halodurans (240 aa); 65.4% identity in 240 aa overlap; ATP-binding protein; amino acid ABC transporter 752909 988860 CPE0602 Clostridium perfringens str. 13 amino acid ABC transporter NP_561518.1 752187 D 195102 CDS NP_561519.1 18309585 988861 753127..754935 1 NC_003366.1 similar to pir:A72221 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (593 aa); 39.3% identity in 356 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 754935 988861 CPE0603 Clostridium perfringens str. 13 hypothetical protein NP_561519.1 753127 D 195102 CDS NP_561520.1 18309586 988862 755187..757031 1 NC_003366.1 similar to pir:A72221 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (593 aa); 31.4% identity in 519 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 757031 988862 CPE0604 Clostridium perfringens str. 13 hypothetical protein NP_561520.1 755187 D 195102 CDS NP_561521.1 18309587 988863 complement(757134..758315) 1 NC_003366.1 similar to pir:H75109 cation efflux system protein (zinc/cadmium) PAB0462 from Pyrococcus abyssi (strain Orsay) (283 aa); 30.9% identity in 272 aa overlap. 6 transmembrane regions were found by PSORT.; cation efflux family protein 758315 988863 CPE0605 Clostridium perfringens str. 13 cation efflux family protein NP_561521.1 757134 R 195102 CDS NP_561522.1 18309588 988864 758558..760465 1 NC_003366.1 multiple regions are similar to gp:AF192766_1 enterotoxin from Bacillus cereus (419 aa); 33.6% identity in 211 aa overlap. Also similar to many N-acetylmuramoyl-L alanine amidases. N-terminal signal sequence was found by PSORT; enterotoxin 760465 entD 988864 entD Clostridium perfringens str. 13 enterotoxin NP_561522.1 758558 D 195102 CDS NP_561523.1 18309589 988865 760607..761902 1 NC_003366.1 catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 2 761902 988865 CPE0607 Clostridium perfringens str. 13 aminopeptidase 2 NP_561523.1 760607 D 195102 CDS NP_561524.1 18309590 988866 complement(761995..762189) 1 NC_003366.1 no significant homology.; hypothetical protein 762189 988866 CPE0608 Clostridium perfringens str. 13 hypothetical protein NP_561524.1 761995 R 195102 CDS NP_561525.1 18309591 988867 762581..763420 1 NC_003366.1 similar to gpu:AP001508_220 BH0497 gene product from Bacillus halodurans (247 aa); 35% identity in 277 aa overlap; HAD hydrolase 763420 988867 CPE0609 Clostridium perfringens str. 13 HAD hydrolase NP_561525.1 762581 D 195102 CDS NP_561526.1 18309592 988868 complement(763637..766966) 1 NC_003366.1 similar to sp:YDGH_BACSU MEMBRANE PROTEIN YDGH from Bacillus subtilis (885 aa); 28.4% identity in 684 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; hypothetical protein 766966 988868 CPE0610 Clostridium perfringens str. 13 hypothetical protein NP_561526.1 763637 R 195102 CDS NP_561527.1 18309593 988869 complement(767227..768822) 1 NC_003366.1 similar to sp:RF3_SYNY3 PEPTIDE CHAIN RELEASE FACTOR 3 (RF-3) from Synechocystis sp. (strain PCC 6803) (547 aa); 52.1% identity in 511 aa overlap. 1 transmembrane region was found by PSORT; peptide chain release factor 3 768822 988869 CPE0611 Clostridium perfringens str. 13 peptide chain release factor 3 NP_561527.1 767227 R 195102 CDS NP_561528.1 18309594 988870 complement(769036..769641) 1 NC_003366.1 no significant homology.; hypothetical protein 769641 988870 CPE0612 Clostridium perfringens str. 13 hypothetical protein NP_561528.1 769036 R 195102 CDS NP_561529.1 18309595 988871 770017..770817 1 NC_003366.1 similar to gpu:AE004216_3 conserved hypothetical protein from Vibrio cholerae (273 aa); 47.4% identity in 266 aa overlap; hypothetical protein 770817 988871 CPE0613 Clostridium perfringens str. 13 hypothetical protein NP_561529.1 770017 D 195102 CDS NP_561530.1 18309596 988872 770858..771520 1 NC_003366.1 similar to prf:2312306A undecaprenyl phosphate galactosephosphotransferase from Anabaena sp. (252 aa); 52.8% identity in 195 aa overlap. 1 transmembrane region was found by PSORT; undecaprenyl phosphate galactosephosphotransferase 771520 rfbP 988872 rfbP Clostridium perfringens str. 13 undecaprenyl phosphate galactosephosphotransferase NP_561530.1 770858 D 195102 CDS NP_561531.1 18309597 988873 771521..772435 1 NC_003366.1 similar to sp:RFBN_SALTY RHAMNOSYLTRANSFERASE RFBN (EC 2.4.1.-) from Salmonella typhimurium (314 aa); 34.9% identity in 304 aa overlap; rhamnosyl transferase 772435 rfbN 988873 rfbN Clostridium perfringens str. 13 rhamnosyl transferase NP_561531.1 771521 D 195102 CDS NP_561532.1 18309598 988874 772458..773339 1 NC_003366.1 similar to pir:C69106 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) from Methanobacterium thermoautotrophicum (292 aa); 65.2% identity in 287 aa overlap. 1 transmembrane region was found by PSORT; glucose-1-phosphate thymidylyltransferase 773339 rfbA 988874 rfbA Clostridium perfringens str. 13 glucose-1-phosphate thymidylyltransferase NP_561532.1 772458 D 195102 CDS NP_561533.1 18309599 988875 773532..774014 1 NC_003366.1 similar to pir:B69106 dTDP-4-dehydrorhamnose 3,5-epimerase from Methanobacterium thermoautotrophicum (strain Delta H) (185 aa); 59.4% identity in 180 aa overlap; dTDP-4-dehydrorhamnose 3,5-epimerase 774014 rfbC 988875 rfbC Clostridium perfringens str. 13 dTDP-4-dehydrorhamnose 3,5-epimerase NP_561533.1 773532 D 195102 CDS NP_561534.1 18309600 988876 774028..774912 1 NC_003366.1 similar to pir:D69106 dTDP-4-dehydrorhamnose reductase from Methanobacterium thermoautotrophicum (strain Delta H) (280 aa); 40% identity in 290 aa overlap; dTDP-4-dehydrorhamnose reductase 774912 rfbD 988876 rfbD Clostridium perfringens str. 13 dTDP-4-dehydrorhamnose reductase NP_561534.1 774028 D 195102 CDS NP_561535.1 18309601 988877 774940..775989 1 NC_003366.1 similar to pir:H69105 dTDP-glucose 4,6-dehydratase from Methanobacterium thermoautotrophicum (strain Delta H) (336 aa); 56% identity in 348 aa overlap; dTDP-glucose 4,6-dehydratase 775989 rfbB 988877 rfbB Clostridium perfringens str. 13 dTDP-glucose 4,6-dehydratase NP_561535.1 774940 D 195102 CDS NP_561536.1 18309602 988878 776014..777228 1 NC_003366.1 no significant homology. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; hypothetical protein 777228 988878 CPE0620 Clostridium perfringens str. 13 hypothetical protein NP_561536.1 776014 D 195102 CDS NP_561537.1 18309603 988879 777225..778073 1 NC_003366.1 similar to gpu:AP001519_228 glycosyltransferase from Bacillus halodurans (303 aa); 26.2% identity in 221 aa overlap; glycosyltransferase 778073 988879 CPE0621 Clostridium perfringens str. 13 glycosyltransferase NP_561537.1 777225 D 195102 CDS NP_561538.1 18309604 988880 778167..778907 1 NC_003366.1 pertially similar to gp:AB038490_1 fukutin from Homo sapiens (461 aa); 28.9% identity in 187 aa overlap. Also partially similar to gp:AF052516_2 hemolysin erythrocyte lysis protein from Provotella intermedia; hypothetical protein 778907 988880 CPE0622 Clostridium perfringens str. 13 hypothetical protein NP_561538.1 778167 D 195102 CDS NP_561539.1 18309605 988881 778916..780367 1 NC_003366.1 similar to gp:AF106539_1 unknown from Streptococcus pneumoniae (495 aa); 30.2% identity in 473 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; capsular polysaccharide synthesis protein 780367 988881 CPE0623 Clostridium perfringens str. 13 capsular polysaccharide synthesis protein NP_561539.1 778916 D 195102 CDS NP_561540.1 18309606 988882 780389..782812 1 NC_003366.1 partially similar to gp:AF154026_1 surface protein PspC from Streptococcus pneumoniae (752 aa); 42.5% identity in 214 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 782812 988882 CPE0624 Clostridium perfringens str. 13 hypothetical protein NP_561540.1 780389 D 195102 CDS NP_561541.1 18309607 988883 782941..784593 1 NC_003366.1 partially similar to gp:AF154026_1 surface protein PspC from Streptococcus pneumoniae (752 aa); 43.4% identity in 272 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 784593 988883 CPE0625 Clostridium perfringens str. 13 hypothetical protein NP_561541.1 782941 D 195102 CDS NP_561542.1 18309608 988884 784795..786159 1 NC_003366.1 partially similar to pir:A41971 surface protein pspA precursor from Streptococcus pneumoniae (619 aa); 46.3% identity in 203 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 786159 988884 CPE0626 Clostridium perfringens str. 13 hypothetical protein NP_561542.1 784795 D 195102 CDS NP_561543.1 18309609 988885 786364..788232 1 NC_003366.1 C-terminal region is highly similar to gp:AF036951_1 choline kinase from Streptococcus pneumoniae (262 aa); 43.8% identity in 258 aa overlap; choline kinase 788232 licA 988885 licA Clostridium perfringens str. 13 choline kinase NP_561543.1 786364 D 195102 CDS NP_561544.1 18309610 988886 788258..789226 1 NC_003366.1 similar to sp:LICB_HAEIN LICB PROTEIN from Haemophilus influenzae Rd (292 aa); 33.3% identity in 300 aa overlap. 7 transmembrane regions were found by PSORT.; lic-1 operon protein 789226 licB 988886 licB Clostridium perfringens str. 13 lic-1 operon protein NP_561544.1 788258 D 195102 CDS NP_561545.1 18309611 988887 789373..790056 1 NC_003366.1 similar to sp:LICC_HAEIN LICC PROTEIN from Haemophilus influenzae Rd (233 aa); 35.3% identity in 221 aa overlap; lic-1 operon protein 790056 licC 988887 licC Clostridium perfringens str. 13 lic-1 operon protein NP_561545.1 789373 D 195102 CDS NP_561546.1 18309612 988888 complement(790175..791467) 1 NC_003366.1 partially similar to gp:AF154026_1 surface protein PspC from Streptococcus pneumoniae (752 aa); 49.4% identity in 233 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 791467 988888 CPE0630 Clostridium perfringens str. 13 hypothetical protein NP_561546.1 790175 R 195102 CDS NP_561547.1 18309613 988889 complement(791586..792605) 1 NC_003366.1 similar to gp:EFA276231_1 PSR protein from Enterococcus faecalis (390 aa); 31.3% identity in 272 aa overlap. N-terminal signal sequence was found by PSORT; PBP5 synthesis regulator protein 792605 988889 CPE0631 Clostridium perfringens str. 13 PBP5 synthesis regulator protein NP_561547.1 791586 R 195102 CDS NP_561548.1 18309614 988890 complement(792885..794159) 1 NC_003366.1 similar to gp:CLOSERTRNA_2 sodium-coupled branched-chain amino acid carrier from Clostridium perfringens (338 aa); 34.3% identity in 335 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; branched chain amino acid ABC transporter carrier protein 794159 brnQ 988890 brnQ Clostridium perfringens str. 13 branched chain amino acid ABC transporter carrier protein NP_561548.1 792885 R 195102 CDS NP_561549.1 18309615 988891 794912..795910 1 NC_003366.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 795910 trpS 988891 trpS Clostridium perfringens str. 13 tryptophanyl-tRNA synthetase NP_561549.1 794912 D 195102 CDS NP_561550.1 18309616 988892 796572..797111 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 797111 988892 CPE0634 Clostridium perfringens str. 13 hypothetical protein NP_561550.1 796572 D 195102 CDS NP_561551.1 18309617 988893 797206..798318 1 NC_003366.1 anSME; radical SAM enzyme; oxidizes both cysteine and serine residues to C-alpha-formylglycine in sulfatase enzyme protein substrates; anaerobic sulfatase-maturase 798318 988893 CPE0635 Clostridium perfringens str. 13 anaerobic sulfatase-maturase NP_561551.1 797206 D 195102 CDS NP_561552.1 18309618 988894 798746..799576 1 NC_003366.1 similar to gpu:AE004350_3 phosphate ABC transporter, periplasmic phosphate-binding protein from Vibrio cholerae (299 aa); 48.3% identity in 230 aa overlap. N-terminal signal sequence was found by PSORT; binding protein; phosphate ABC transporter substrate-binding protein 799576 988894 CPE0636 Clostridium perfringens str. 13 phosphate ABC transporter substrate-binding protein NP_561552.1 798746 D 195102 CDS NP_561553.1 18309619 988895 799800..800618 1 NC_003366.1 similar to gpu:AE004350_3 phosphate ABC transporter, periplasmic phosphate-binding protein from Vibrio cholerae (299 aa); 48.8% identity in 240 aa overlap; binding protein; phosphate ABC transporter substrate-binding protein 800618 988895 CPE0637 Clostridium perfringens str. 13 phosphate ABC transporter substrate-binding protein NP_561553.1 799800 D 195102 CDS NP_561554.1 18309620 988896 800700..801587 1 NC_003366.1 similar to gpu:AE004350_4 phosphate ABC transporter, permease from Vibrio cholerae (327 aa); 54.3% identity in 278 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permease; phosphate ABC transporter permease 801587 988896 CPE0638 Clostridium perfringens str. 13 phosphate ABC transporter permease NP_561554.1 800700 D 195102 CDS NP_561555.1 18309621 988897 801590..802414 1 NC_003366.1 similar to gpu:AE004350_5 phosphate ABC transporter, permease from Vibrio cholerae (289 aa); 53.1% identity in 273 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permease; phosphate ABC transporter permease 802414 988897 CPE0639 Clostridium perfringens str. 13 phosphate ABC transporter permease NP_561555.1 801590 D 195102 CDS NP_561556.1 18309622 988898 802432..803193 1 NC_003366.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 803193 988898 CPE0640 Clostridium perfringens str. 13 phosphate transporter ATP-binding protein NP_561556.1 802432 D 195102 CDS NP_561557.1 18309623 988899 803218..803871 1 NC_003366.1 similar to pir:B70378 transcription regulator PhoU-like from Aquifex aeolicus (221 aa); 35% identity in 206 aa overlap; phosphate transporter PhoU 803871 phoU 988899 phoU Clostridium perfringens str. 13 phosphate transporter PhoU NP_561557.1 803218 D 195102 CDS NP_561558.1 18309624 988900 804031..804726 1 NC_003366.1 similar to pir:D72228 response regulator DrrA from Thermotoga maritima (strain MSB8) (247 aa); 50.6% identity in 231 aa overlap; DNA-binding response regulator 804726 988900 CPE0642 Clostridium perfringens str. 13 DNA-binding response regulator NP_561558.1 804031 D 195102 CDS NP_561559.1 18309625 988901 complement(804897..805520) 1 NC_003366.1 no significant homology.; hypothetical protein 805520 988901 CPE0643 Clostridium perfringens str. 13 hypothetical protein NP_561559.1 804897 R 195102 CDS NP_561560.1 18309626 988902 complement(805554..805970) 1 NC_003366.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 805970 flaV 988902 flaV Clostridium perfringens str. 13 flavodoxin NP_561560.1 805554 R 195102 CDS NP_561561.1 18309627 988903 complement(806384..808042) 1 NC_003366.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 808042 gltX 988903 gltX Clostridium perfringens str. 13 glutaminyl-tRNA synthetase NP_561561.1 806384 R 195102 CDS NP_561562.1 18309628 988904 complement(808295..808450) 1 NC_003366.1 no significant homology.; hypothetical protein 808450 988904 CPE0646 Clostridium perfringens str. 13 hypothetical protein NP_561562.1 808295 R 195102 CDS NP_561563.1 18309629 988905 complement(808605..809693) 1 NC_003366.1 no significant homology. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein 809693 988905 CPE0647 Clostridium perfringens str. 13 hypothetical protein NP_561563.1 808605 R 195102 CDS NP_561564.1 18309630 988906 809789..811210 1 NC_003366.1 similar to gpu:AP001513_207 spore germination protein KA from Bacillus halodurans (515 aa); 36.2% identity in 425 aa overlap. 7 transmembrane regions were found by PSORT.; spore germination protein KA 811210 gerKA 988906 gerKA Clostridium perfringens str. 13 spore germination protein KA NP_561564.1 809789 D 195102 CDS NP_561565.1 18309631 988907 811185..812309 1 NC_003366.1 similar to pir:S38904 hypothetical protein 2 from Clostridium pasteurianum (383 aa); 20.8% identity in 342 aa overlap; spore germination protein B3 812309 gerBC 988907 gerBC Clostridium perfringens str. 13 spore germination protein B3 NP_561565.1 811185 D 195102 CDS NP_561566.1 18309632 988908 812504..813637 1 NC_003366.1 N-terminal region is similar to gp:AF150930_5 unknown from Thermoanaerobacter ethanolicus (169 aa); 54.3% identity in 164 aa overlap; ATPase AAA 813637 988908 CPE0650 Clostridium perfringens str. 13 ATPase AAA NP_561566.1 812504 D 195102 CDS NP_561567.1 18309633 988909 813713..814126 1 NC_003366.1 no significant homology.; hypothetical protein 814126 988909 CPE0651 Clostridium perfringens str. 13 hypothetical protein NP_561567.1 813713 D 195102 CDS NP_561568.1 18309634 988910 814422..815642 1 NC_003366.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 815642 tyrS 988910 tyrS Clostridium perfringens str. 13 tyrosyl-tRNA synthetase NP_561568.1 814422 D 195102 CDS NP_561569.1 18309635 988911 816062..816754 1 NC_003366.1 similar to pir:F75433 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (242 aa); 36.1% identity in 230 aa overlap; Ser/Thr protein phosphatase 816754 988911 CPE0653 Clostridium perfringens str. 13 Ser/Thr protein phosphatase NP_561569.1 816062 D 195102 CDS NP_561570.1 18309636 988912 816873..817664 1 NC_003366.1 similar to gpu:AP001516_278 GTP pyrophosphokinase from Bacillus halodurans (211 aa); 57.1% identity in 205 aa overlap; relA/spoT family protein 817664 relA 988912 relA Clostridium perfringens str. 13 relA/spoT family protein NP_561570.1 816873 D 195102 CDS NP_561571.1 18309637 988913 817937..818722 1 NC_003366.1 no significant homology.; hypothetical protein 818722 988913 CPE0655 Clostridium perfringens str. 13 hypothetical protein NP_561571.1 817937 D 195102 CDS NP_561572.1 18309638 988914 818840..819955 1 NC_003366.1 similar to pir:B72315 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (351 aa); 26.6% identity in 365 aa overlap; hypothetical protein 819955 988914 CPE0656 Clostridium perfringens str. 13 hypothetical protein NP_561572.1 818840 D 195102 CDS NP_561573.1 18309639 988915 819969..821306 1 NC_003366.1 similar to sp:Y929_THEMA HYPOTHETICAL PROTEIN TM0929 from Thermotoga maritima (strain MSB8) (397 aa); 27.4% identity in 347 aa overlap; hypothetical protein 821306 988915 CPE0657 Clostridium perfringens str. 13 hypothetical protein NP_561573.1 819969 D 195102 CDS NP_561574.1 18309640 988916 821464..822855 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 822855 988916 CPE0658 Clostridium perfringens str. 13 hypothetical protein NP_561574.1 821464 D 195102 CDS NP_561575.1 18309641 988917 823205..824698 1 NC_003366.1 similar to sp:YJJI_HAEIN HYPOTHETICAL PROTEIN HI0521 from Haemophilus influenzae (strain Rd KW20) (514 aa); 46.9% identity in 499 aa overlap; hypothetical protein 824698 988917 CPE0659 Clostridium perfringens str. 13 hypothetical protein NP_561575.1 823205 D 195102 CDS NP_561576.1 18309642 988918 824764..825528 1 NC_003366.1 similar to sp:YJJW_ECOLI HYPOTHETICAL 31.5 KDA PROTEIN IN OSMY-DEOC INTERGENIC REGION (F287) from Escherichia coli (287 aa); 40.8% identity in 206 aa overlap; (4Fe-4S)-binding protein 825528 988918 CPE0660 Clostridium perfringens str. 13 (4Fe-4S)-binding protein NP_561576.1 824764 D 195102 CDS NP_561577.1 18309643 988919 825828..826343 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 826343 988919 CPE0661 Clostridium perfringens str. 13 hypothetical protein NP_561577.1 825828 D 195102 CDS NP_561578.1 18309644 988920 complement(826452..827255) 1 NC_003366.1 partially similar to pir:B70374 conserved hypothetical protein aq_854 from Aquifex aeolicus (545 aa); 29.3% identity in 208 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 827255 988920 CPE0662 Clostridium perfringens str. 13 hypothetical protein NP_561578.1 826452 R 195102 CDS NP_561579.1 18309645 988921 complement(827578..828888) 1 NC_003366.1 similar to gpu:AE003864_7 hypothetical protein from Xylella fastidiosa (460 aa); 20.5% identity in 414 aa overlap; F5/8 type C domain-containing protein 828888 988921 CPE0663 Clostridium perfringens str. 13 F5/8 type C domain-containing protein NP_561579.1 827578 R 195102 CDS NP_561580.1 18309646 988922 complement(829607..829951) 1 NC_003366.1 no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 829951 988922 CPE0664 Clostridium perfringens str. 13 hypothetical protein NP_561580.1 829607 R 195102 CDS NP_561581.1 18309647 988923 830406..831137 1 NC_003366.1 no significant homology.; hypothetical protein 831137 988923 CPE0665 Clostridium perfringens str. 13 hypothetical protein NP_561581.1 830406 D 195102 CDS NP_561582.1 18309648 988924 831185..831457 1 NC_003366.1 similar to pir:F75335 probable transposase from Deinococcus radiodurans (strain R1) (140 aa); 56.9% identity in 58 aa overlap. Probably truncated; transposase 831457 988924 CPE0666 Clostridium perfringens str. 13 transposase NP_561582.1 831185 D 195102 CDS NP_561583.1 18309649 988925 831468..831821 1 NC_003366.1 similar to N-terminal of pir:JC4292 probable transposase from thermophilic bacterium PS-3 (369 aa); 37.7% identity in 106 aa overlap. Probably truncated; IS13; transposase 831821 988925 CPE0667 Clostridium perfringens str. 13 transposase NP_561583.1 831468 D 195102 CDS NP_561584.1 18309650 988926 831763..832623 1 NC_003366.1 similar to gp:CDI131844_3 transposase from Clostridium difficile (408 aa); 47.4% identity in 270 aa overlap; transposase 832623 988926 CPE0668 Clostridium perfringens str. 13 transposase NP_561584.1 831763 D 195102 CDS NP_561585.1 18309651 988927 832865..833872 1 NC_003366.1 pertially similar to gp:AF047005_1 asparagine-rich protein from Plasmodium falciparum (728 aa); 28% identity in 236 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 833872 988927 CPE0669 Clostridium perfringens str. 13 hypothetical protein NP_561585.1 832865 D 195102 CDS NP_561586.1 18309652 988928 complement(834018..836468) 1 NC_003366.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 836468 leuS 988928 leuS Clostridium perfringens str. 13 leucyl-tRNA synthetase NP_561586.1 834018 R 195102 CDS NP_561587.1 18309653 988929 complement(837243..837803) 1 NC_003366.1 similar to pir:T36466 mutT domain-containing protein from Streptomyces coelicolor (204 aa); 25.6% identity in 129 aa overlap; hypothetical protein 837803 988929 CPE0671 Clostridium perfringens str. 13 hypothetical protein NP_561587.1 837243 R 195102 CDS NP_561588.1 18309654 988930 838095..838457 1 NC_003366.1 no significant homology.; hypothetical protein 838457 988930 CPE0672 Clostridium perfringens str. 13 hypothetical protein NP_561588.1 838095 D 195102 CDS NP_561589.1 18309655 988931 838662..839648 1 NC_003366.1 similar to sp:BIRA_BACSU BIRA BIFUNCTIONAL PROTEIN [INCLUDES: BIOTIN OPERON REPRESSOR; BIOTIN-[ACETYL-COA-CARBOXYLASE] SYNTHETASE (EC 6.3.4.15) (BIOTIN-PROTEIN LIGASE)] from Bacillus subtilis (325 aa); 32.9% identity in 322 aa overlap; bifunctional biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase 839648 birA 988931 birA Clostridium perfringens str. 13 bifunctional biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase NP_561589.1 838662 D 195102 CDS NP_561590.1 18309656 988932 839807..840892 1 NC_003366.1 partially similar to pir:F75357 hypothetical protein from Deinococcus radiodurans (strain R1) (328 aa); 26% identity in 181 aa overlap.Also similar to many DNA helicases; HRDC domain-containing protein 840892 988932 CPE0674 Clostridium perfringens str. 13 HRDC domain-containing protein NP_561590.1 839807 D 195102 CDS NP_561591.1 18309657 988933 840894..841061 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 841061 988933 CPE0675 Clostridium perfringens str. 13 hypothetical protein NP_561591.1 840894 D 195102 CDS NP_561592.1 18309658 988934 841162..841896 1 NC_003366.1 no significant homology. 5 transmembrane regions were found by PSORT.; hypothetical protein 841896 988934 CPE0676 Clostridium perfringens str. 13 hypothetical protein NP_561592.1 841162 D 195102 CDS NP_561593.1 18309659 988935 842086..842391 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 842391 988935 CPE0677 Clostridium perfringens str. 13 hypothetical protein NP_561593.1 842086 D 195102 CDS NP_561594.1 18309660 988936 842638..843288 1 NC_003366.1 similar to sp:DUT_CHLPN DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE (EC 3.6.1.23) (DUTPASE) (DUTP PYROPHOSPHATASE) from Chlamydophila pneumoniae (strains CWL029 and AR39) (145 aa); 47.3% identity in 91 aa overlap; deoxyuridine 5`-triphosphate nucleotidohydrolase 843288 dut 988936 dut Clostridium perfringens str. 13 deoxyuridine 5`-triphosphate nucleotidohydrolase NP_561594.1 842638 D 195102 CDS NP_561595.1 18309661 988937 843791..845101 1 NC_003366.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 845101 thiC 988937 thiC Clostridium perfringens str. 13 thiamine biosynthesis protein ThiC NP_561595.1 843791 D 195102 CDS NP_561596.1 18309662 988938 845339..849139 1 NC_003366.1 similar to pir:G81961 phosphoribosylformylglycinamidine synthase (EC 6.3.5.3) NMA0445 from Neisseria meningitidis (group A strain Z2491) (1320 aa); 25.6% identity in 1056 aa overlap. 1 transmembrane region was found by PSORT; phosphoribosylformylglycinamidine synthase 849139 purL 988938 purL Clostridium perfringens str. 13 phosphoribosylformylglycinamidine synthase NP_561596.1 845339 D 195102 CDS NP_561597.1 18309663 988939 849450..849929 1 NC_003366.1 Catalyzes a step in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase catalytic subunit 849929 purE 988939 purE Clostridium perfringens str. 13 phosphoribosylaminoimidazole carboxylase catalytic subunit NP_561597.1 849450 D 195102 CDS NP_561598.1 18309664 988940 849929..850636 1 NC_003366.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 850636 purC 988940 purC Clostridium perfringens str. 13 phosphoribosylaminoimidazolesuccinocarboxamide synthase NP_561598.1 849929 D 195102 CDS NP_561599.1 18309665 988941 850658..852103 1 NC_003366.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 852103 purF 988941 purF Clostridium perfringens str. 13 amidophosphoribosyltransferase NP_561599.1 850658 D 195102 CDS NP_561600.1 18309666 988942 852104..853105 1 NC_003366.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 853105 purM 988942 purM Clostridium perfringens str. 13 phosphoribosylaminoimidazole synthetase NP_561600.1 852104 D 195102 CDS NP_561601.1 18309667 988943 853093..853707 1 NC_003366.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 853707 purN 988943 purN Clostridium perfringens str. 13 phosphoribosylglycinamide formyltransferase NP_561601.1 853093 D 195102 CDS NP_561602.1 18309668 988944 853720..855225 1 NC_003366.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 855225 purH 988944 purH Clostridium perfringens str. 13 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase NP_561602.1 853720 D 195102 CDS NP_561603.1 18309669 988945 855632..856591 1 NC_003366.1 similar to sp:PUR2_AQUAE PHOSPHORIBOSYLAMINE-GLYCINE LIGASE (EC 6.3.4.13) (GARS) (GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE) (PHOSPHORIBOSYLGLYCINAMIDE SYNTHETASE) from Aquifex aeolicus (424 aa); 51.3% identity in 413 aa overlap; phosphoribosylamine--glycine ligase 856591 purD 988945 purD Clostridium perfringens str. 13 phosphoribosylamine--glycine ligase NP_561603.1 855632 D 195102 CDS NP_561604.1 18309670 988947 857504..857866 1 NC_003366.1 similar to gpu:AE004430_11 conserved hypothetical protein from Vibrio cholerae (143 aa); 47.4% identity in 116 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 857866 988947 CPE0688 Clostridium perfringens str. 13 hypothetical protein NP_561604.1 857504 D 195102 CDS NP_561605.1 18309671 988948 858399..858941 1 NC_003366.1 similar to sp:Y746_METJA HYPOTHETICAL PROTEIN MJ0746 from Methanococcus jannaschii (141 aa); 43.4% identity in 143 aa overlap; hypothetical protein 858941 988948 CPE0689 Clostridium perfringens str. 13 hypothetical protein NP_561605.1 858399 D 195102 CDS NP_561606.1 18309672 988949 complement(859074..860474) 1 NC_003366.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 860474 argH 988949 argH Clostridium perfringens str. 13 argininosuccinate lyase NP_561606.1 859074 R 195102 CDS NP_561607.1 18309673 988950 complement(860568..861785) 1 NC_003366.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 861785 argG 988950 argG Clostridium perfringens str. 13 argininosuccinate synthase NP_561607.1 860568 R 195102 CDS NP_561608.1 18309674 988951 862390..863037 1 NC_003366.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 863037 988951 CPE0692 Clostridium perfringens str. 13 translaldolase NP_561608.1 862390 D 195102 CDS NP_561609.1 18309675 988952 863437..868497 1 NC_003366.1 similar to pir:T29435 hypothetical protein SC3A7.16c from Streptomyces coelicolor (1361 aa); 30.7% identity in 1024 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 868497 988952 CPE0693 Clostridium perfringens str. 13 hypothetical protein NP_561609.1 863437 D 195102 CDS NP_561610.1 18309676 988953 868969..869982 1 NC_003366.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase 869982 988953 CPE0694 Clostridium perfringens str. 13 3-deoxy-7-phosphoheptulonate synthase NP_561610.1 868969 D 195102 CDS NP_561611.1 18309677 988954 870079..871131 1 NC_003366.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 871131 aroB 988954 aroB Clostridium perfringens str. 13 3-dehydroquinate synthase NP_561611.1 870079 D 195102 CDS NP_561612.1 18309678 988955 871378..872652 1 NC_003366.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 872652 aroA 988955 aroA Clostridium perfringens str. 13 3-phosphoshikimate 1-carboxyvinyltransferase NP_561612.1 871378 D 195102 CDS NP_561613.2 161485643 988956 872716..873789 1 NC_003366.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 873789 aroC 988956 aroC Clostridium perfringens str. 13 chorismate synthase NP_561613.2 872716 D 195102 CDS NP_561614.1 18309680 988957 873958..874251 1 NC_003366.1 similar to N-terminal of sp:PHEA_AQUAE P-PROTEIN [INCLUDES: CHORISMATE MUTASE (EC 5.4.99.5) (CM) from Aquifex aeolicus (362 aa); 30.1% identity in 93 aa overlap; chorismate mutase 874251 988957 CPE0698 Clostridium perfringens str. 13 chorismate mutase NP_561614.1 873958 D 195102 CDS NP_561615.1 18309681 988958 874579..874731 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 874731 988958 CPE0699 Clostridium perfringens str. 13 hypothetical protein NP_561615.1 874579 D 195102 CDS NP_561616.1 18309682 988959 875075..875890 1 NC_003366.1 similar to gpu:AP001511_213 shikimate 5-dehydrogenase from Bacillus halodurans (278 aa); 40.6% identity in 256 aa overlap; shikimate 5-dehydrogenase 875890 aroE 988959 aroE Clostridium perfringens str. 13 shikimate 5-dehydrogenase NP_561616.1 875075 D 195102 CDS NP_561617.1 18309683 988960 876144..876659 1 NC_003366.1 similar to sp:AROK_AQUAE SHIKIMATE KINASE (EC 2.7.1.71) (SK) from Aquifex aeolicus (168 aa); 37% identity in 154 aa overlap; shikimate kinase 876659 aroK 988960 aroK Clostridium perfringens str. 13 shikimate kinase NP_561617.1 876144 D 195102 CDS NP_561618.1 18309684 988961 876855..877295 1 NC_003366.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 877295 aroQ 988961 aroQ Clostridium perfringens str. 13 3-dehydroquinate dehydratase NP_561618.1 876855 D 195102 CDS NP_561619.1 18309685 988962 877378..877893 1 NC_003366.1 no significant homology.; hypothetical protein 877893 988962 CPE0703 Clostridium perfringens str. 13 hypothetical protein NP_561619.1 877378 D 195102 CDS NP_561620.1 18309686 988963 878020..878352 1 NC_003366.1 similar to sp:R14H_BACSH 30S RIBOSOMAL PROTEIN S14 HOMOLOG from Bacillus sphaericus (109 aa); 46.7% identity in 107 aa overlap; 30S ribosomal protein 878352 988963 CPE0704 Clostridium perfringens str. 13 30S ribosomal protein NP_561620.1 878020 D 195102 CDS NP_561621.1 18309687 988964 878354..879211 1 NC_003366.1 no significant homology. 6 transmembrane regions were found by PSORT.; hypothetical protein 879211 988964 CPE0705 Clostridium perfringens str. 13 hypothetical protein NP_561621.1 878354 D 195102 CDS NP_561622.1 18309688 988965 879423..880265 1 NC_003366.1 no significant homology.; hypothetical protein 880265 988965 CPE0706 Clostridium perfringens str. 13 hypothetical protein NP_561622.1 879423 D 195102 CDS NP_561623.1 18309689 988966 880391..881281 1 NC_003366.1 similar to gp:AF084104_17 NatA from Bacillus firmus (299 aa); 43.3% identity in 293 aa overlap; ATP-binding protein; ABC transporter 881281 988966 CPE0707 Clostridium perfringens str. 13 ABC transporter NP_561623.1 880391 D 195102 CDS NP_561624.1 18309690 988967 881283..882494 1 NC_003366.1 similar to sp:YHAP_BACSU HYPOTHETICAL 45.4 KDA PROTEIN IN SSPB-PRSA INTERGENIC REGION from Bacillus subtilis (419 aa); 30.7% identity in 394 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein 882494 988967 CPE0708 Clostridium perfringens str. 13 hypothetical protein NP_561624.1 881283 D 195102 CDS NP_561625.1 18309691 988968 882605..883594 1 NC_003366.1 similar to sp:CBH_CLOPE CHOLOYLGLYCINE HYDROLASE (EC 3.5.1.24) (CONJUGATED BILE ACID HYDROLASE) (CBAH) (BILE SALT HYDROLASE) from Clostridium perfringens (329 aa); 100% identity in 273 aa overlap; choloylglycine hydrolase 883594 cbh 988968 cbh Clostridium perfringens str. 13 choloylglycine hydrolase NP_561625.1 882605 D 195102 CDS NP_561626.1 18309692 988969 884390..884872 1 NC_003366.1 similar to gpu:AP001518_182 transcriptional regulator (Lrp/AsnC family) from Bacillus halodurans (164 aa); 52.3% identity in 153 aa overlap; Lrp/AsnC family; AsnC family transcriptional regulator 884872 988969 CPE0710 Clostridium perfringens str. 13 AsnC family transcriptional regulator NP_561626.1 884390 D 195102 CDS NP_561627.1 18309693 988970 884869..886047 1 NC_003366.1 similar to gpu:AP001518_181 aspartate aminotransferase from Bacillus halodurans (393 aa); 54.3% identity in 376 aa overlap; aspartate aminotransferase 886047 aspC 988970 aspC Clostridium perfringens str. 13 aspartate aminotransferase NP_561627.1 884869 D 195102 CDS NP_561628.1 18309694 988971 886162..887187 1 NC_003366.1 no significant homology.; hypothetical protein 887187 988971 CPE0712 Clostridium perfringens str. 13 hypothetical protein NP_561628.1 886162 D 195102 CDS NP_561629.1 18309695 988972 complement(887244..887708) 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 887708 988972 CPE0713 Clostridium perfringens str. 13 hypothetical protein NP_561629.1 887244 R 195102 CDS NP_561630.1 18309696 988973 complement(887767..888909) 1 NC_003366.1 similar to gp:SAY14370_3 ypfP gene product from Staphylococcus aureus (391 aa); 28.3% identity in 364 aa overlap; hypothetical protein 888909 988973 CPE0714 Clostridium perfringens str. 13 hypothetical protein NP_561630.1 887767 R 195102 CDS NP_561631.1 18309697 988974 889388..889903 1 NC_003366.1 similar to gpu:AE004201_8 conserved hypothetical protein from Vibrio cholerae (161 aa); 34.9% identity in 83 aa overlap; GNAT family acetyltransferase 889903 988974 CPE0715 Clostridium perfringens str. 13 GNAT family acetyltransferase NP_561631.1 889388 D 195102 CDS NP_561632.1 18309698 988975 890124..890642 1 NC_003366.1 similar to gpu:AP001514_32 RNA polymerase ECF-type sigma factor from Bacillus halodurans (179 aa); 32.1% identity in 159 aa overlap; RNA polymerase ECF-type sigma factor 890642 sigW 988975 sigW Clostridium perfringens str. 13 RNA polymerase ECF-type sigma factor NP_561632.1 890124 D 195102 CDS NP_561633.1 18309699 988976 890718..892130 1 NC_003366.1 some similarity to gpu:AP001520_227 BH4003 gene product from Bacillus halodurans (264 aa); 30.6% identity in 173 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 892130 988976 CPE0717 Clostridium perfringens str. 13 hypothetical protein NP_561633.1 890718 D 195102 CDS NP_561634.1 18309700 988977 892351..893553 1 NC_003366.1 similar to pir:A71213 truncated alanine-tRNA ligase homolog PH1969 from Pyrococcus horikoshii (404 aa); 28.2% identity in 358 aa overlap; DHHA1 domain-containing protein 893553 988977 CPE0718 Clostridium perfringens str. 13 DHHA1 domain-containing protein NP_561634.1 892351 D 195102 CDS NP_561635.1 18309701 988978 893608..894612 1 NC_003366.1 similar to prf:2315479K epsG gene from Lactococcus lactis (316 aa); 31.8% identity in 255 aa overlap; capsular polysaccharide biosynthesis protein 894612 988978 CPE0719 Clostridium perfringens str. 13 capsular polysaccharide biosynthesis protein NP_561635.1 893608 D 195102 CDS NP_561636.1 18309702 988979 894764..895939 1 NC_003366.1 similar to pir:G70007 conserved hypothetical protein yueF from Bacillus subtilis (369 aa); 25.2% identity in 349 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein 895939 988979 CPE0720 Clostridium perfringens str. 13 hypothetical protein NP_561636.1 894764 D 195102 CDS NP_561637.1 18309703 988980 896376..897233 1 NC_003366.1 similar to pir:F81444 probable integral membrane protein Cj0263 from Campylobacter jejuni (strain NCTC 11168) (291 aa); 45.6% identity in 274 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; zinc transporter ZupT 897233 988980 CPE0721 Clostridium perfringens str. 13 zinc transporter ZupT NP_561637.1 896376 D 195102 CDS NP_561638.1 18309704 988981 897523..898185 1 NC_003366.1 similar to gpu:AP001512_140 transcriptional regulator (DeoR family) from Bacillus halodurans (251 aa); 33.6% identity in 238 aa overlap; DeoR family; DeoR family transcriptional regulator 898185 988981 CPE0722 Clostridium perfringens str. 13 DeoR family transcriptional regulator NP_561638.1 897523 D 195102 CDS NP_561639.1 18309705 988982 898316..899104 1 NC_003366.1 similar to sp:YBIV_ECOLI HYPOTHETICAL 30.4 KDA PROTEIN IN OMPX-MOEB INTERGENIC REGION from Escherichia coli (271 aa); 37.1% identity in 259 aa overlap; HAD hydrolase 899104 988982 CPE0723 Clostridium perfringens str. 13 HAD hydrolase NP_561639.1 898316 D 195102 CDS NP_561640.1 18309706 988983 899303..900331 1 NC_003366.1 similar to sp:SPL_BACSU SPORE PHOTOPRODUCT LYASE (EC 4.1.99.-) from Bacillus subtilis (199 aa); 91.5% identity in 199 aa overlap. Also similar to pir:I40865 hypothetical protein 1 from Clostridium perfringens; spore photoproduct lyase 900331 splB 988983 splB Clostridium perfringens str. 13 spore photoproduct lyase NP_561640.1 899303 D 195102 CDS NP_561641.1 18309707 988984 900997..903081 1 NC_003366.1 similar to pir:I40866 exo-alpha-sialidase (EC 3.2.1.18) from Clostridium perfringens (694 aa); 99.7% identity in 694 aa overlap. N-terminal signal sequence was found by PSORT; exo-alpha-sialidase 903081 nanI 988984 nanI Clostridium perfringens str. 13 exo-alpha-sialidase NP_561641.1 900997 D 195102 CDS NP_561642.1 18309708 988985 903129..904283 1 NC_003366.1 similar to pir:I40867 hypothetical protein 2 from Clostridium perfringens (384 aa); 96.1% identity in 384 aa overlap; hypothetical protein 904283 988985 CPE0726 Clostridium perfringens str. 13 hypothetical protein NP_561642.1 903129 D 195102 CDS NP_561643.1 18309709 988986 904693..905499 1 NC_003366.1 similar to pir:I40868 hypothetical protein 3 nanH region from Clostridium perfringens (265 aa); 68.3% identity in 265 aa overlap. 3 transmembrane regions were found by PSORT.; hypothetical protein 905499 988986 CPE0727 Clostridium perfringens str. 13 hypothetical protein NP_561643.1 904693 D 195102 CDS NP_561644.1 18309710 988987 905664..905942 1 NC_003366.1 similar to pir:I40869 hypothetical protein 4 nanH region from Clostridium perfringens (190 aa); 97.6% identity in 84 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing); hypothetical protein 905942 988987 CPE0728 Clostridium perfringens str. 13 hypothetical protein NP_561644.1 905664 D 195102 CDS NP_561645.1 18309711 988988 905890..906390 1 NC_003366.1 similar to pir:I40869 hypothetical protein 4 nanH region from Clostridium perfringens (190 aa); 97.1% identity in 103 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing); hypothetical protein 906390 988988 CPE0729 Clostridium perfringens str. 13 hypothetical protein NP_561645.1 905890 D 195102 CDS NP_561646.1 18309712 988989 906584..907048 1 NC_003366.1 similar to sp:YIAC_ECOLI HYPOTHETICAL 17.1 KDA PROTEIN IN TAG-BISC INTERGENIC REGION. from Escherichia coli (146 aa); 36% identity in 139 aa overlap; hypothetical protein 907048 988989 CPE0730 Clostridium perfringens str. 13 hypothetical protein NP_561646.1 906584 D 195102 CDS NP_561647.1 18309713 988990 907404..907580 1 NC_003366.1 no significant homology.; hypothetical protein 907580 988990 CPE0731 Clostridium perfringens str. 13 hypothetical protein NP_561647.1 907404 D 195102 CDS NP_561648.1 18309714 988991 907833..908408 1 NC_003366.1 similar to pir:H69339 conserved hypothetical protein AF0720 from Archaeoglobus fulgidus (214 aa); 38.5% identity in 213 aa overlap; hypothetical protein 908408 988991 CPE0732 Clostridium perfringens str. 13 hypothetical protein NP_561648.1 907833 D 195102 CDS NP_561649.1 18309715 988992 complement(908623..909519) 1 NC_003366.1 similar to sp:YC30_ODOSI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR YCF30 from Odontella sinensis chloroplast (309 aa); 29% identity in 262 aa overlap; LysR family; LysR family transcriptional regulator 909519 988992 CPE0733 Clostridium perfringens str. 13 LysR family transcriptional regulator NP_561649.1 908623 R 195102 CDS NP_561650.1 18309716 988993 909869..911569 1 NC_003366.1 similar to gpu:AE004394_5 NADH oxidase, from Vibrio cholerae (567 aa); 43% identity in 530 aa overlap. N-terminal signal sequence was found by PSORT; pyridine nucleotide-disulfide oxidoreductase 911569 naoX 988993 naoX Clostridium perfringens str. 13 pyridine nucleotide-disulfide oxidoreductase NP_561650.1 909869 D 195102 CDS NP_561651.1 18309717 988994 911675..912961 1 NC_003366.1 partially similar to pir:D82968 hypothetical protein PA5430 from Pseudomonas aeruginosa (strain PAO1) (404 aa); 25.5% identity in 314 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; hypothetical protein 912961 988994 CPE0735 Clostridium perfringens str. 13 hypothetical protein NP_561651.1 911675 D 195102 CDS NP_561652.1 18309718 988995 913050..914381 1 NC_003366.1 similar to gpu:AP001510_169 BH0994 gene product from Bacillus halodurans (395 aa); 24.9% identity in 369 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; amino acid ABC transporter permease 914381 988995 CPE0736 Clostridium perfringens str. 13 amino acid ABC transporter permease NP_561652.1 913050 D 195102 CDS NP_561653.1 18309719 988996 complement(914540..915202) 1 NC_003366.1 similar to >gp:LMO132543_1 fibronectin-binding protein, 25kDA from Listeria monocytogenes (215 aa); 30.6% identity in 219 aa overlap; fibronectin-binding protein 915202 988996 CPE0737 Clostridium perfringens str. 13 fibronectin-binding protein NP_561653.1 914540 R 195102 CDS NP_561654.1 18309720 988997 complement(915477..915755) 1 NC_003366.1 similar to pir:D69971 conserved hypothetical protein yraL from Bacillus subtilis (87 aa); 47.4% identity in 76 aa overlap; hypothetical protein 915755 988997 CPE0738 Clostridium perfringens str. 13 hypothetical protein NP_561654.1 915477 R 195102 CDS NP_561655.1 18309721 988998 916103..916420 1 NC_003366.1 similar to pir:B37192 thioredoxin from Bacillus subtilis (104 aa); 56.8% identity in 81 aa overlap; thioredoxin 916420 988998 CPE0739 Clostridium perfringens str. 13 thioredoxin NP_561655.1 916103 D 195102 CDS NP_561656.1 18309722 988999 916727..917059 1 NC_003366.1 similar to gpu:AP001509_175 cinnamoyl ester hydrolase from Bacillus halodurans (118 aa); 37% identity in 92 aa overlap; hypothetical protein 917059 988999 CPE0740 Clostridium perfringens str. 13 hypothetical protein NP_561656.1 916727 D 195102 CDS NP_561657.1 18309723 989000 917086..918297 1 NC_003366.1 similar to sp:YE54_HAEIN HYPOTHETICAL CYTOCHROME C-TYPE BIOGENESIS PROTEIN HI1454 from Haemophilus influenzae (213 aa); 39.9% identity in 193 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; cytochrome C-type biogenesis protein 918297 989000 CPE0741 Clostridium perfringens str. 13 cytochrome C-type biogenesis protein NP_561657.1 917086 D 195102 CDS NP_561658.1 18309724 989001 918827..920548 1 NC_003366.1 C-terminal region is similar to pir:C69464 carboxylesterase (estA) homolog from Archaeoglobus fulgidus (311 aa); 35.9% identity in 248 aa overlap; lipase 920548 lipB 989001 lipB Clostridium perfringens str. 13 lipase NP_561658.1 918827 D 195102 CDS NP_561659.1 18309725 989002 921005..922456 1 NC_003366.1 similar to gpu:AE004154_11 carbon starvation protein A, from Vibrio cholerae (494 aa); 48.1% identity in 437 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; carbon starvation protein CstA 922456 cstA 989002 cstA Clostridium perfringens str. 13 carbon starvation protein CstA NP_561659.1 921005 D 195102 CDS NP_561660.1 18309726 989003 922600..922902 1 NC_003366.1 no significant homology.; hypothetical protein 922902 989003 CPE0744 Clostridium perfringens str. 13 hypothetical protein NP_561660.1 922600 D 195102 CDS NP_561661.1 18309727 989004 complement(922990..923544) 1 NC_003366.1 similar to gpu:AP001509_157 transcriptional regulator (TetR/AcrR family) from Bacillus halodurans (188 aa); 30% identity in 170 aa overlap; TetR/AcrR family; hypothetical protein 923544 989004 CPE0745 Clostridium perfringens str. 13 hypothetical protein NP_561661.1 922990 R 195102 CDS NP_561662.1 18309728 989005 923942..924643 1 NC_003366.1 similar to pir:B69477 ABC transporter, ATP-binding protein homolog from Archaeoglobus fulgidus (231 aa); 51.3% identity in 226 aa overlap; ATP-binding protein; ABC transporter ATP-binding protein 924643 989005 CPE0746 Clostridium perfringens str. 13 ABC transporter ATP-binding protein NP_561662.1 923942 D 195102 CDS NP_561663.1 18309729 989006 924660..928058 1 NC_003366.1 C-terminal region is similar to pir:C69477 hypothetical protein AF1820 from Archaeoglobus fulgidus (791 aa); 23.4% identity in 538 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; hypothetical protein 928058 989006 CPE0747 Clostridium perfringens str. 13 hypothetical protein NP_561663.1 924660 D 195102 CDS NP_561664.1 18309730 989007 928284..928649 1 NC_003366.1 no significant homology.; hypothetical protein 928649 989007 CPE0748 Clostridium perfringens str. 13 hypothetical protein NP_561664.1 928284 D 195102 CDS NP_561665.1 18309731 989008 928856..929869 1 NC_003366.1 partially similar to pir:B75136 hypothetical protein PAB1767 from Pyrococcus abyssi (strain Orsay) (601 aa); 23.1% identity in 329 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 929869 989008 CPE0749 Clostridium perfringens str. 13 hypothetical protein NP_561665.1 928856 D 195102 CDS NP_561666.1 18309732 989009 929956..930366 1 NC_003366.1 similar to gp:AF158628_1 hypothetical protein from Prochlorococcus PCC9511 (146 aa); 31.4% identity in 105 aa overlap; hypothetical protein 930366 989009 CPE0750 Clostridium perfringens str. 13 hypothetical protein NP_561666.1 929956 D 195102 CDS NP_561667.1 18309733 989010 930503..930673 1 NC_003366.1 no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 930673 989010 CPE0751 Clostridium perfringens str. 13 hypothetical protein NP_561667.1 930503 D 195102 CDS NP_561668.1 18309734 989011 930915..931253 1 NC_003366.1 no significant homology.; hypothetical protein 931253 989011 CPE0752 Clostridium perfringens str. 13 hypothetical protein NP_561668.1 930915 D 195102 CDS NP_561669.1 18309735 989012 931305..932249 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 932249 989012 CPE0753 Clostridium perfringens str. 13 hypothetical protein NP_561669.1 931305 D 195102 CDS NP_561670.1 18309736 989013 complement(932386..933843) 1 NC_003366.1 similar to sp:CLS2_BACSU PROBABLE CARDIOLIPIN SYNTHETASE 2 (EC 2.7.8.-) (CARDIOLIPIN SYNTHASE 2) (CL SYNTHASE 2) from Bacillus subtilis (482 aa); 42.8% identity in 484 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; cardiolipin synthetase 933843 clsC 989013 clsC Clostridium perfringens str. 13 cardiolipin synthetase NP_561670.1 932386 R 195102 CDS NP_561671.1 18309737 989014 934078..934572 1 NC_003366.1 similar to C-terminal of gp:AF083252_3 unknown from Pseudomonas aeruginosa (278 aa); 26.8% identity in 153 aa overlap; hypothetical protein 934572 989014 CPE0755 Clostridium perfringens str. 13 hypothetical protein NP_561671.1 934078 D 195102 CDS NP_561672.1 18309738 989015 complement(934665..935927) 1 NC_003366.1 similar to pir:S22662 cytosine deaminase (EC 3.5.4.1) from Escherichia coli (427 aa); 51.2% identity in 402 aa overlap; cytosine deaminase 935927 989015 CPE0756 Clostridium perfringens str. 13 cytosine deaminase NP_561672.1 934665 R 195102 CDS NP_561673.1 18309739 989016 936375..937130 1 NC_003366.1 similar to pir:T44251 creatinase (EC 3.5.3.3) from Arthrobacter sp. (strain TE1826) (258 aa); 56.6% identity in 244 aa overlap; creatinase 937130 989016 CPE0757 Clostridium perfringens str. 13 creatinase NP_561673.1 936375 D 195102 CDS NP_561674.1 18309740 989017 937179..938105 1 NC_003366.1 similar to pir:D71226 hypothetical protein PH0070 from Pyrococcus horikoshii (275 aa); 22.1% identity in 290 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; hypothetical protein 938105 989017 CPE0758 Clostridium perfringens str. 13 hypothetical protein NP_561674.1 937179 D 195102 CDS NP_561675.1 18309741 989018 complement(938231..939430) 1 NC_003366.1 partially similar to gpu:AP001513_267 BH1994 gene product from Bacillus halodurans (735 aa); 25.4% identity in 268 aa overlap; hypothetical protein 939430 989018 CPE0759 Clostridium perfringens str. 13 hypothetical protein NP_561675.1 938231 R 195102 CDS NP_561676.1 18309742 989019 939619..940029 1 NC_003366.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 940029 def 989019 def Clostridium perfringens str. 13 peptide deformylase NP_561676.1 939619 D 195102 CDS NP_561677.1 18309743 989020 complement(940362..941627) 1 NC_003366.1 similar to sp:GLTT_BACST PROTON/SODIUM-GLUTAMATE SYMPORT PROTEIN (GLUTAMATE-ASPARTATE CARRIER PROTEIN) from Bacillus stearothermophilus (421 aa); 62.9% identity in 421 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; proton/sodium- glutamate symport protein 941627 gltT 989020 gltT Clostridium perfringens str. 13 proton/sodium- glutamate symport protein NP_561677.1 940362 R 195102 CDS NP_561678.1 18309744 989021 complement(942203..942895) 1 NC_003366.1 similar to gpu:AE004391_5 conserved hypothetical protein from Vibrio cholerae (224 aa); 43% identity in 228 aa overlap; HAD-superfamily hydrolase 942895 989021 CPE0762 Clostridium perfringens str. 13 HAD-superfamily hydrolase NP_561678.1 942203 R 195102 CDS NP_561679.1 18309745 989022 943121..944074 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 944074 989022 CPE0763 Clostridium perfringens str. 13 hypothetical protein NP_561679.1 943121 D 195102 CDS NP_561680.1 18309746 989023 complement(944309..944938) 1 NC_003366.1 no significant homology.; hypothetical protein 944938 989023 CPE0764 Clostridium perfringens str. 13 hypothetical protein NP_561680.1 944309 R 195102 CDS NP_561681.1 18309747 989024 945090..945893 1 NC_003366.1 similar to gpu:AP001519_11 transcriptional regulator of multidrug-efflux transporter genes from Bacillus halodurans (271 aa); 26.7% identity in 255 aa overlap; MerR family; transcriptional regulator 945893 989024 CPE0765 Clostridium perfringens str. 13 transcriptional regulator NP_561681.1 945090 D 195102 CDS NP_561682.1 18309748 989025 complement(946053..947447) 1 NC_003366.1 no significant homology.; hypothetical protein 947447 989025 CPE0766 Clostridium perfringens str. 13 hypothetical protein NP_561682.1 946053 R 195102 CDS NP_561683.1 18309749 989026 complement(947568..948767) 1 NC_003366.1 similar to gp:CPIS1136_1 C.perfringens IS1136 DNA from Clostridium perfringens (122 aa); 68% identity in 125 aa overlap; IS1136 transposase 948767 989026 CPE0767 Clostridium perfringens str. 13 IS1136 transposase NP_561683.1 947568 R 195102 CDS NP_561684.1 18309750 989027 949320..949475 1 NC_003366.1 no significant homology.; hypothetical protein 949475 989027 CPE0768 Clostridium perfringens str. 13 hypothetical protein NP_561684.1 949320 D 195102 CDS NP_561685.1 18309751 989028 949815..951179 1 NC_003366.1 similar to sp:GUTA_BACSU PROBABLE GLUCITOL TRANSPORT PROTEIN GUTA from Bacillus subtilis (463 aa); 30% identity in 237 aa overlap. 12 transmembrane regions were found by PSORT.; sugar transport protein 951179 gutA 989028 gutA Clostridium perfringens str. 13 sugar transport protein NP_561685.1 949815 D 195102 CDS NP_561686.1 18309752 989029 complement(951402..952241) 1 NC_003366.1 similar to sp:LACR_STAXY LACTOSE OPERON TRANSCRIPTION ACTIVATOR from Staphylococcus xylosus (279 aa); 44.5% identity in 272 aa overlap; AraC/XylS family; transcriptional regulator 952241 989029 CPE0770 Clostridium perfringens str. 13 transcriptional regulator NP_561686.1 951402 R 195102 CDS NP_561687.1 18309753 989030 952605..955634 1 NC_003366.1 similar to sp:BGAL_STAXY BETA-GALACTOSIDASE (EC 3.2.1.23) (LACTASE) from Staphylococcus xylosus (994 aa); 44.9% identity in 1004 aa overlap; beta-galactosidase 955634 bgaL 989030 bgaL Clostridium perfringens str. 13 beta-galactosidase NP_561687.1 952605 D 195102 CDS NP_561688.1 18309754 989031 complement(955777..957018) 1 NC_003366.1 similar to gpu:AP001520_121 BH3897 gene product from Bacillus halodurans (427 aa); 43.7% identity in 435 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein 957018 989031 CPE0772 Clostridium perfringens str. 13 hypothetical protein NP_561688.1 955777 R 195102 CDS NP_561689.1 18309755 989032 complement(957162..957314) 1 NC_003366.1 no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 957314 989032 CPE0773 Clostridium perfringens str. 13 hypothetical protein NP_561689.1 957162 R 195102 CDS NP_561690.1 18309756 989033 957776..958522 1 NC_003366.1 similar to N-terminal of pir:B69271 hypothetical protein AF0170 from Archaeoglobus fulgidus (434 aa); 28.7% identity in 251 aa overlap. S.D. unclear; hypothetical protein 958522 989033 CPE0774 Clostridium perfringens str. 13 hypothetical protein NP_561690.1 957776 D 195102 CDS NP_561691.1 18309757 989034 958700..959398 1 NC_003366.1 similar to gpu:REU278372_1 NorA2 protein from Ralstonia eutropha (235 aa); 27.4% identity in 223 aa overlap; hypothetical protein 959398 989034 CPE0775 Clostridium perfringens str. 13 hypothetical protein NP_561691.1 958700 D 195102 CDS NP_561692.1 18309758 989035 959551..960252 1 NC_003366.1 similar to pir:C75282 transcription regulator from Deinococcus radiodurans (strain R1) (231 aa); 30% identity in 200 aa overlap; Crp/Fnr family; transcriptional regulator 960252 989035 CPE0776 Clostridium perfringens str. 13 transcriptional regulator NP_561692.1 959551 D 195102 CDS NP_561693.1 18309759 989036 complement(960510..960671) 1 NC_003366.1 similar to sp:RUBR_CLOPE RUBREDOXIN (RD) from Clostridium perfringens (54 aa); 77.4% identity in 53 aa overlap; rubredoxin 960671 rubR1 989036 rubR1 Clostridium perfringens str. 13 rubredoxin NP_561693.1 960510 R 195102 CDS NP_561694.1 18309760 989037 961274..962020 1 NC_003366.1 similar to C-terminal of gpu:AP001510_233 flavohemoglobin from Bacillus halodurans (411 aa); 37.9% identity in 240 aa overlap. 1 transmembrane region was found by PSORT; flavohemoprotein 962020 989037 CPE0778 Clostridium perfringens str. 13 flavohemoprotein NP_561694.1 961274 D 195102 CDS NP_561695.1 18309761 989038 962239..962949 1 NC_003366.1 similar to gpu:AP001507_231 transcriptional regulator of anaerobic genes from Bacillus halodurans (237 aa); 28.8% identity in 215 aa overlap; Crp/Fnr family; transcriptional regulator 962949 989038 CPE0779 Clostridium perfringens str. 13 transcriptional regulator NP_561695.1 962239 D 195102 CDS NP_561696.1 18309762 989039 complement(963004..963165) 1 NC_003366.1 similar to sp:RUBR_CLOPE RUBREDOXIN (RD) from Clostridium perfringens (54 aa); 100% identity in 53 aa overlap; rubredoxin 963165 rubR2 989039 rubR2 Clostridium perfringens str. 13 rubredoxin NP_561696.1 963004 R 195102 CDS NP_561697.1 18309763 989040 complement(963192..964412) 1 NC_003366.1 similar to C-terminal of sp:Y732_METJA HYPOTHETICAL PROTEIN MJ0732 from Methanococcus jannaschii (393 aa); 33.7% identity in 243 aa overlap; metallo-beta-lactamase 964412 989040 CPE0781 Clostridium perfringens str. 13 metallo-beta-lactamase NP_561697.1 963192 R 195102 CDS NP_561698.1 18309764 989041 964622..965191 1 NC_003366.1 similar to prf:2406356A alkyl hydrogen peroxide reductase from Enterococcus faecalis (187 aa); 65.8% identity in 187 aa overlap; alkyl hydroperoxide reductase 965191 989041 CPE0782 Clostridium perfringens str. 13 alkyl hydroperoxide reductase NP_561698.1 964622 D 195102 CDS NP_561699.1 18309765 989042 965438..967108 1 NC_003366.1 similar to pir:D35156 thioredoxin reductase (NADPH) (EC 1.6.4.5) from Eubacterium acidaminophilum (315 aa); 50.8% identity in 309 aa overlap. 2 transmembrane regions were found by PSORT.; thioredoxin reductase 967108 989042 CPE0783 Clostridium perfringens str. 13 thioredoxin reductase NP_561699.1 965438 D 195102 CDS NP_561700.1 18309766 989043 complement(967229..968935) 1 NC_003366.1 similar to gp:SAU82085_1 pristinamycin resistance protein VgaB from Staphylococcus aureus (552 aa); 34.5% identity in 522 aa overlap; ATP-binding protein; ABC transporter 968935 vgaB 989043 vgaB Clostridium perfringens str. 13 ABC transporter NP_561700.1 967229 R 195102 CDS NP_561701.1 18309767 989044 969653..970711 1 NC_003366.1 similar to pir:E71373 probable regulatory protein (pfoS/R) from Treponema pallidum (350 aa); 32% identity in 338 aa overlap. 10 transmembrane regions were found by PSORT.; regulatory protein 970711 pfoS/R 989044 pfoS/R Clostridium perfringens str. 13 regulatory protein NP_561701.1 969653 D 195102 CDS NP_561702.1 18309768 989045 970747..971673 1 NC_003366.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 971673 apbA 989045 apbA Clostridium perfringens str. 13 2-dehydropantoate 2-reductase NP_561702.1 970747 D 195102 CDS NP_561703.1 18309769 989046 971936..972361 1 NC_003366.1 similar to pir:C70065 transcription regulator MarR family homolog ywoH from Bacillus subtilis (137 aa); 30.7% identity in 101 aa overlap; MarR family; MarR family transcriptional regulator 972361 989046 CPE0787 Clostridium perfringens str. 13 MarR family transcriptional regulator NP_561703.1 971936 D 195102 CDS NP_561704.1 18309770 989047 972580..973083 1 NC_003366.1 no significant homology.; hypothetical protein 973083 989047 CPE0788 Clostridium perfringens str. 13 hypothetical protein NP_561704.1 972580 D 195102 CDS NP_561705.1 18309771 989048 973186..973629 1 NC_003366.1 similar to pir:A69860 transcription regulator MarR family homolog ykoM from Bacillus subtilis (154 aa); 35.6% identity in 135 aa overlap. S.D. unclear; MarR family; transcriptional regulator 973629 989048 CPE0789 Clostridium perfringens str. 13 transcriptional regulator NP_561705.1 973186 D 195102 CDS NP_561706.1 18309772 989049 973712..974593 1 NC_003366.1 similar to gp:AF154003_1 pirin from Lycopersicon esculentum (291 aa); 36% identity in 272 aa overlap; pirin 974593 989049 CPE0790 Clostridium perfringens str. 13 pirin NP_561706.1 973712 D 195102 CDS NP_561707.1 18309773 989050 974627..975223 1 NC_003366.1 similar to gpu:AP001520_267 NAD(P)H dehydrogenase (quinone) from Bacillus halodurans (211 aa); 46% identity in 198 aa overlap; NAD(P)H dehydrogenase 975223 989050 CPE0791 Clostridium perfringens str. 13 NAD(P)H dehydrogenase NP_561707.1 974627 D 195102 CDS NP_561708.1 18309774 989051 complement(975399..976349) 1 NC_003366.1 similar to pir:C69805 iron(III) dicitrate transport permease homolog yfiY from Bacillus subtilis (325 aa); 48.4% identity in 279 aa overlap. N-terminal signal sequence was found by PSORT; binding protein; iron(III) dicitrate ABC transporter 976349 989051 CPE0792 Clostridium perfringens str. 13 iron(III) dicitrate ABC transporter NP_561708.1 975399 R 195102 CDS NP_561709.1 18309775 989052 976479..977483 1 NC_003366.1 similar to pir:D69805 iron(III) dicitrate transport permease homolog yfiZ from Bacillus subtilis (333 aa); 35% identity in 306 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; permease; iron(III) dicitrate ABC transporter 977483 989052 CPE0793 Clostridium perfringens str. 13 iron(III) dicitrate ABC transporter NP_561709.1 976479 D 195102 CDS NP_561710.1 18309776 989053 977483..978505 1 NC_003366.1 similar to pir:B69800 iron(III) dicitrate transport permease homolog yfhA from Bacillus subtilis (343 aa); 38% identity in 308 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; permease; iron(III) dicitrate ABC transporter 978505 989053 CPE0794 Clostridium perfringens str. 13 iron(III) dicitrate ABC transporter NP_561710.1 977483 D 195102 CDS NP_561711.1 18309777 989054 978511..979281 1 NC_003366.1 similar to pir:G70022 iron(III) dicitrate transport permease homolog yusV from Bacillus subtilis (275 aa); 50.6% identity in 257 aa overlap; ATP-binding protein; iron(III) dicitrate ABC transporter 979281 989054 CPE0795 Clostridium perfringens str. 13 iron(III) dicitrate ABC transporter NP_561711.1 978511 D 195102 CDS NP_561712.1 18309778 989055 979635..980150 1 NC_003366.1 similar to gpu:AE004390_1 MutT/nudix family protein from Vibrio cholerae (186 aa); 32.5% identity in 154 aa overlap; MutT/nudix family protein 980150 989055 CPE0796 Clostridium perfringens str. 13 MutT/nudix family protein NP_561712.1 979635 D 195102 CDS NP_561713.1 18309779 989056 complement(980300..980881) 1 NC_003366.1 similar to sp:YWOA_BACSU HYPOTHETICAL 21.7 KDA PROTEIN IN NRGB-SPOIIQ INTERGENIC REGION from Bacillus subtilis (193 aa); 32.6% identity in 193 aa overlap. 4 transmembrane regions were found by PSORT.; PAP2 family protein 980881 989056 CPE0797 Clostridium perfringens str. 13 PAP2 family protein NP_561713.1 980300 R 195102 CDS NP_561714.1 18309780 989057 981105..981845 1 NC_003366.1 similar to sp:YOXB_BACSU HYPOTHETICAL 28.5 KDA PROTEIN IN RTP-PELB INTERGENIC REGION (ORF119+) from Bacillus subtilis (256 aa); 40.6% identity in 244 aa overlap; hypothetical protein 981845 989057 CPE0798 Clostridium perfringens str. 13 hypothetical protein NP_561714.1 981105 D 195102 CDS NP_561715.1 18309781 989058 982027..983271 1 NC_003366.1 similar to N-terminal of sp:FLIB_SALTY LYSINE-N-METHYLASE (EC 2.1.1.-) (LYSINE N-METHYLTRANSFERASE) from Salmonella typhimurium (401 aa); 28.9% identity in 204 aa overlap; hypothetical protein 983271 989058 CPE0799 Clostridium perfringens str. 13 hypothetical protein NP_561715.1 982027 D 195102 CDS NP_561716.1 18309782 989059 complement(983406..983933) 1 NC_003366.1 no significant homology.; hypothetical protein 983933 989059 CPE0800 Clostridium perfringens str. 13 hypothetical protein NP_561716.1 983406 R 195102 CDS NP_561717.1 18309783 989060 984452..984919 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 984919 989060 CPE0801 Clostridium perfringens str. 13 hypothetical protein NP_561717.1 984452 D 195102 CDS NP_561718.1 18309784 989061 985047..985406 1 NC_003366.1 no significant homology.; hypothetical protein 985406 989061 CPE0802 Clostridium perfringens str. 13 hypothetical protein NP_561718.1 985047 D 195102 CDS NP_561719.1 18309785 989062 985384..985761 1 NC_003366.1 partially similar to pir:A75268 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (241 aa); 31.5% identity in 111 aa overlap; hypothetical protein 985761 989062 CPE0803 Clostridium perfringens str. 13 hypothetical protein NP_561719.1 985384 D 195102 CDS NP_561720.1 18309786 989063 985945..987819 1 NC_003366.1 catalyzes the formation of L-histidinol from L-histidinol phosphate; sensory box protein/histidinol phosphate phosphatase 987819 989063 CPE0804 Clostridium perfringens str. 13 sensory box protein/histidinol phosphate phosphatase NP_561720.1 985945 D 195102 CDS NP_561721.1 18309787 989064 988114..989946 1 NC_003366.1 similar to pir:S63617 cymH protein from Klebsiella oxytoca (598 aa); 54.7% identity in 563 aa overlap; cyclomaltodextrinase 989946 989064 CPE0805 Clostridium perfringens str. 13 cyclomaltodextrinase NP_561721.1 988114 D 195102 CDS NP_561722.1 18309788 989065 990191..991474 1 NC_003366.1 similar to sp:YA25_METJA HYPOTHETICAL PROTEIN MJ1025 from Methanococcus jannaschii (388 aa); 27.1% identity in 421 aa overlap; hypothetical protein 991474 989065 CPE0806 Clostridium perfringens str. 13 hypothetical protein NP_561722.1 990191 D 195102 CDS NP_561723.1 18309789 989066 complement(991753..992256) 1 NC_003366.1 no significant homology. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 992256 989066 CPE0807 Clostridium perfringens str. 13 hypothetical protein NP_561723.1 991753 R 195102 CDS NP_561724.1 18309790 989067 992576..993121 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 993121 989067 CPE0808 Clostridium perfringens str. 13 hypothetical protein NP_561724.1 992576 D 195102 CDS NP_561725.1 18309791 989068 complement(993161..993781) 1 NC_003366.1 partially similar to prf:2316406C membrane protein from Staphylococcus gallinarum (330 aa); 38.4% identity in 151 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 993781 989068 CPE0809 Clostridium perfringens str. 13 hypothetical protein NP_561725.1 993161 R 195102 CDS NP_561726.1 18309792 989069 994044..994988 1 NC_003366.1 similar to pir:C69805 iron(III) dicitrate transport permease homolog yfiY from Bacillus subtilis (325 aa); 31.9% identity in 273 aa overlap; iron(III) dicitrate ABC transporter 994988 fhuD 989069 fhuD Clostridium perfringens str. 13 iron(III) dicitrate ABC transporter NP_561726.1 994044 D 195102 CDS NP_561727.1 18309793 989070 995087..996100 1 NC_003366.1 similar to gpu:AP001510_258 ferrichrome ABC transporter (permease) from Bacillus halodurans (338 aa); 40.7% identity in 302 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; ferrichrome ABC transporter 996100 fhuB 989070 fhuB Clostridium perfringens str. 13 ferrichrome ABC transporter NP_561727.1 995087 D 195102 CDS NP_561728.1 18309794 989071 996104..997117 1 NC_003366.1 similar to sp:FHUG_BACSU FERRICHROME TRANSPORT SYSTEM PERMEase FHUG from Bacillus subtilis (336 aa); 49.2% identity in 179 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; ferrichrome ABC transporter 997117 fhuG 989071 fhuG Clostridium perfringens str. 13 ferrichrome ABC transporter NP_561728.1 996104 D 195102 CDS NP_561729.1 18309795 989072 997182..997964 1 NC_003366.1 similar to sp:FHUC_BACSU FERRICHROME TRANSPORT ATP-BINDING PROTEIN FHUC from Bacillus subtilis (269 aa); 55.4% identity in 260 aa overlap; ATP-binding protein; ferrichrome ABC transporter 997964 fhuC 989072 fhuC Clostridium perfringens str. 13 ferrichrome ABC transporter NP_561729.1 997182 D 195102 CDS NP_561730.1 18309796 989073 998264..998752 1 NC_003366.1 similar to sp:YHHY_ECOLI HYPOTHETICAL 18.8 KDA PROTEIN IN GNTR-GGT INTERGENIC REGION from Escherichia coli (162 aa); 37.2% identity in 156 aa overlap; GNAT family acetyltransferase 998752 989073 CPE0814 Clostridium perfringens str. 13 GNAT family acetyltransferase NP_561730.1 998264 D 195102 CDS NP_561731.1 18309797 989074 998829..999044 1 NC_003366.1 no significant homology.; hypothetical protein 999044 989074 CPE0815 Clostridium perfringens str. 13 hypothetical protein NP_561731.1 998829 D 195102 CDS NP_561732.1 18309798 989075 999037..999354 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 999354 989075 CPE0816 Clostridium perfringens str. 13 hypothetical protein NP_561732.1 999037 D 195102 CDS NP_561733.1 18309799 989076 complement(999566..999892) 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 999892 989076 CPE0817 Clostridium perfringens str. 13 hypothetical protein NP_561733.1 999566 R 195102 CDS NP_561734.1 18309800 989077 1000306..1003689 1 NC_003366.1 similar to gpu:AP001509_223 endo-beta-N-acetylglucosaminidase from Bacillus halodurans (878 aa); 42.5% identity in 656 aa overlap. N-terminal signal sequence was found by PSORT; endo-beta-N-acetylglucosaminidase 1003689 989077 CPE0818 Clostridium perfringens str. 13 endo-beta-N-acetylglucosaminidase NP_561734.1 1000306 D 195102 CDS NP_561735.1 18309801 989078 1003890..1004798 1 NC_003366.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 1004798 ddl 989078 ddl Clostridium perfringens str. 13 D-alanine--D-alanine ligase NP_561735.1 1003890 D 195102 CDS NP_561736.1 18309802 989079 1004945..1005772 1 NC_003366.1 similar to >sp:Y265_MYCGE HYPOTHETICAL PROTEIN MG265 from Mycoplasma genitalium (278 aa); 27.5% identity in 273 aa overlap; hypothetical protein 1005772 989079 CPE0820 Clostridium perfringens str. 13 hypothetical protein NP_561736.1 1004945 D 195102 CDS NP_561737.1 18309803 989080 1006099..1007079 1 NC_003366.1 similar to gp:AF130465_1 mannose-specific phosphotransferase system component IIAB from Streptococcus salivarius (330 aa); 56.2% identity in 317 aa overlap; mannnose-specific IIAB component; PTS system transporter 1007079 989080 CPE0821 Clostridium perfringens str. 13 PTS system transporter NP_561737.1 1006099 D 195102 CDS NP_561738.1 18309804 989081 1007130..1007933 1 NC_003366.1 similar to gp:AF130465_2 mannose-specific phosphotransferase system component IIC [Streptococcus salivarius] from Streptococcus salivarius (271 aa); 42.1% identity in 126 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; mannnose-specific IIC component; PTS system mannose/fructose/sorbose family transporter subunit IIC 1007933 989081 CPE0822 Clostridium perfringens str. 13 PTS system mannose/fructose/sorbose family transporter subunit IIC NP_561738.1 1007130 D 195102 CDS NP_561739.1 18309805 989082 1007953..1008444 1 NC_003366.1 similar to gp:AF130465_3 mannose-specific phosphotransferase system component IID [Streptococcus salivarius] from Streptococcus salivarius (303 aa); 73.2% identity in 123 aa overlap. Probably truncated by frameshift mutation; mannnose-specific IID component; PTS system transporter 1008444 989082 CPE0823 Clostridium perfringens str. 13 PTS system transporter NP_561739.1 1007953 D 195102 CDS NP_561740.1 18309806 989083 1008407..1008865 1 NC_003366.1 similar to gp:AF130465_3 mannose-specific phosphotransferase system component IID [Streptococcus salivarius] from Streptococcus salivarius (303 aa); 62.3% identity in 167 aa overlap. Probably truncated by frameshift mutation. 3 transmembrane regions were found by PSORT.; mannnose-specific IID component; PTS system transporter 1008865 989083 CPE0824 Clostridium perfringens str. 13 PTS system transporter NP_561740.1 1008407 D 195102 CDS NP_561741.1 18309807 989084 1009036..1009410 1 NC_003366.1 similar to gp:AF130465_4 unknown from Streptococcus salivarius (124 aa); 32.3% identity in 124 aa overlap; hypothetical protein 1009410 989084 CPE0825 Clostridium perfringens str. 13 hypothetical protein NP_561741.1 1009036 D 195102 CDS NP_561742.1 18309808 989085 1009782..1010033 1 NC_003366.1 no significant homology.; hypothetical protein 1010033 989085 CPE0826 Clostridium perfringens str. 13 hypothetical protein NP_561742.1 1009782 D 195102 CDS NP_561743.1 18309809 989086 1010354..1011271 1 NC_003366.1 similar to gpu:AP001520_126 endo-1,4-beta-xylanase from Bacillus halodurans (319 aa); 27.2% identity in 276 aa overlap. N-terminal signal sequence was found by PSORT; polysaccharide deacetylase 1011271 989086 CPE0827 Clostridium perfringens str. 13 polysaccharide deacetylase NP_561743.1 1010354 D 195102 CDS NP_561744.1 18309810 989087 1011728..1012510 1 NC_003366.1 similar to gp:AF068901_6 unknown from Streptococcus pneumoniae (234 aa); 27.4% identity in 186 aa overlap. 7 transmembrane regions were found by PSORT.; hypothetical protein 1012510 989087 CPE0828 Clostridium perfringens str. 13 hypothetical protein NP_561744.1 1011728 D 195102 CDS NP_561745.1 18309811 989088 1012767..1013708 1 NC_003366.1 no significant homology. S.D. unclear.; hypothetical protein 1013708 989088 CPE0829 Clostridium perfringens str. 13 hypothetical protein NP_561745.1 1012767 D 195102 CDS NP_561746.1 18309812 989089 complement(1013773..1015128) 1 NC_003366.1 similar to gpu:AP001514_169 BH2163 gene product from Bacillus halodurans (464 aa); 34.8% identity in 428 aa overlap. 9 transmembrane regions were found by PSORT.; hypothetical protein 1015128 989089 CPE0830 Clostridium perfringens str. 13 hypothetical protein NP_561746.1 1013773 R 195102 CDS NP_561747.1 18309813 989090 1015357..1017771 1 NC_003366.1 similar to sp:BGAL_THETU BETA-GALACTOSIDASE (EC 3.2.1.23) (LACTASE) from Thermoanaerobacterium thermosulfurigenes (716 aa); 56.3% identity in 611 aa overlap; beta-galactosidase 1017771 bgaL 989090 bgaL Clostridium perfringens str. 13 beta-galactosidase NP_561747.1 1015357 D 195102 CDS NP_561748.1 18309814 989091 1018565..1019518 1 NC_003366.1 similar to pir:C69870 conserved hypothetical protein ykwD from Bacillus subtilis (257 aa); 28.7% identity in 230 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1019518 989091 CPE0832 Clostridium perfringens str. 13 hypothetical protein NP_561748.1 1018565 D 195102 CDS NP_561749.1 18309815 989092 1020041..1021861 1 NC_003366.1 similar to prf:1807237B subtilin transport protein from Bacillus subtilis (599 aa); 28.6% identity in 559 aa overlap. 4 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 1021861 989092 CPE0833 Clostridium perfringens str. 13 ABC transporter NP_561749.1 1020041 D 195102 CDS NP_561750.1 18309816 989093 1021861..1023651 1 NC_003366.1 similar to sp:SPAT_BACSU SUBTILIN TRANSPORT ATP-BINDING PROTEIN SPAT from Bacillus subtilis (614 aa); 29.6% identity in 578 aa overlap. 3 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 1023651 989093 CPE0834 Clostridium perfringens str. 13 ABC transporter NP_561750.1 1021861 D 195102 CDS NP_561751.1 18309817 989094 1023868..1024365 1 NC_003366.1 similar to pir:E69772 hypothetical protein ydbS from Bacillus subtilis (159 aa); 36.4% identity in 99 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1024365 989094 CPE0835 Clostridium perfringens str. 13 hypothetical protein NP_561751.1 1023868 D 195102 CDS NP_561752.1 18309818 989095 1024374..1026002 1 NC_003366.1 similar to pir:F69772 hypothetical protein ydbT from Bacillus subtilis (493 aa); 19.1% identity in 325 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein 1026002 989095 CPE0836 Clostridium perfringens str. 13 hypothetical protein NP_561752.1 1024374 D 195102 CDS NP_561753.1 18309819 989096 1026369..1026653 1 NC_003366.1 similar to sp:ARSR_STAAU ARSENICAL RESISTANCE OPERON REPRESSOR from Staphylococcus aureus plasmid pI258 (104 aa); 55.2% identity in 67 aa overlap; ArsR family; transcriptional regulator 1026653 989096 CPE0837 Clostridium perfringens str. 13 transcriptional regulator NP_561753.1 1026369 D 195102 CDS NP_561754.1 18309820 989097 1026771..1027169 1 NC_003366.1 similar to pir:B70360 arsenate reductase from Aquifex aeolicus (144 aa); 45.6% identity in 125 aa overlap; arsenate reductase 1027169 989097 CPE0838 Clostridium perfringens str. 13 arsenate reductase NP_561754.1 1026771 D 195102 CDS NP_561755.1 18309821 989098 1027186..1028502 1 NC_003366.1 similar to pir:H70158 conserved hypothetical integral membrane protein BB0473 from Borrelia burgdorferi (454 aa); 26.8% identity in 414 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein 1028502 989098 CPE0839 Clostridium perfringens str. 13 hypothetical protein NP_561755.1 1027186 D 195102 CDS NP_561756.1 18309822 989099 1028688..1029356 1 NC_003366.1 similar to gp:SPAJ6391_1 response regulator from Streptococcus pneumoniae (225 aa); 48.2% identity in 220 aa overlap; two-component response regulator 1029356 989099 CPE0840 Clostridium perfringens str. 13 two-component response regulator NP_561756.1 1028688 D 195102 CDS NP_561757.1 18309823 989100 1029353..1030363 1 NC_003366.1 similar to gp:AF036964_2 histidine kinase from Lactobacillus sakei (339 aa); 32.1% identity in 280 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; two-component sensor histidine kinase 1030363 989100 CPE0841 Clostridium perfringens str. 13 two-component sensor histidine kinase NP_561757.1 1029353 D 195102 CDS NP_561758.1 18309824 989101 1030647..1030814 1 NC_003366.1 no significant homology.; hypothetical protein 1030814 989101 CPE0842 Clostridium perfringens str. 13 hypothetical protein NP_561758.1 1030647 D 195102 CDS NP_561759.1 18309825 989102 1030943..1031356 1 NC_003366.1 similar to gp:AF275307_2 unknown from Helicobacter pylori (234 aa); 39% identity in 100 aa overlap; hypothetical protein 1031356 989102 CPE0843 Clostridium perfringens str. 13 hypothetical protein NP_561759.1 1030943 D 195102 CDS NP_561760.1 18309826 989103 complement(1031615..1031773) 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1031773 989103 CPE0844 Clostridium perfringens str. 13 hypothetical protein NP_561760.1 1031615 R 195102 CDS NP_561761.1 18309827 989104 complement(1031779..1032390) 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1032390 989104 CPE0845 Clostridium perfringens str. 13 hypothetical protein NP_561761.1 1031779 R 195102 CDS NP_561762.1 18309828 989105 1032778..1034352 1 NC_003366.1 similar to sp:CLOS_CLOHI ALPHA-CLOSTRIPAIN PRECURSOR (EC 3.4.22.8) (CLOSTRIDIOPEPTIDASE B) from Clostridium histolyticum (526 aa); 58.3% identity in 533 aa overlap. N-terminal signal sequence was found by PSORT; alpha-clostripain 1034352 989105 CPE0846 Clostridium perfringens str. 13 alpha-clostripain NP_561762.1 1032778 D 195102 CDS NP_561763.1 18309829 989106 1035447..1036241 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1036241 989106 CPE0847 Clostridium perfringens str. 13 hypothetical protein NP_561763.1 1035447 D 195102 CDS NP_561764.1 18309830 989108 1036701..1037438 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1037438 989108 CPE0848 Clostridium perfringens str. 13 hypothetical protein NP_561764.1 1036701 D 195102 CDS NP_561765.1 18309831 989109 1037849..1038499 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1038499 989109 CPE0849 Clostridium perfringens str. 13 hypothetical protein NP_561765.1 1037849 D 195102 CDS NP_561766.1 18309832 989110 1039372..1040139 1 NC_003366.1 similar to gp:AP001520_137 ABC transporter (ATP-binding protein) from Bacillus halodurans (253 aa); 54.4% identity in 250 aa overlap; ATP-binding protein; ABC transporter 1040139 989110 CPE0850 Clostridium perfringens str. 13 ABC transporter NP_561766.1 1039372 D 195102 CDS NP_561767.1 18309833 989111 1040120..1042174 1 NC_003366.1 similar to pir:B70001 ABC transporter (permease) homolog ytsD from Bacillus subtilis (646 aa); 23.6% identity in 665 aa overlap. 10 transmembrane regions were found by PSORT.; permease; ABC transporter 1042174 989111 CPE0851 Clostridium perfringens str. 13 ABC transporter NP_561767.1 1040120 D 195102 CDS NP_561768.1 18309834 989112 1042539..1043960 1 NC_003366.1 similar to gb|AAF56462.1| (AE003751) CG11909 gene product from Drosophila melanogaster (657 aa); 31% identity in 432 aa overlap; hypothetical protein 1043960 989112 CPE0852 Clostridium perfringens str. 13 hypothetical protein NP_561768.1 1042539 D 195102 CDS NP_561769.1 18309835 989113 complement(1044211..1044513) 1 NC_003366.1 no significant homology.; hypothetical protein 1044513 989113 CPE0853 Clostridium perfringens str. 13 hypothetical protein NP_561769.1 1044211 R 195102 CDS NP_561770.1 18309836 989114 1044777..1045919 1 NC_003366.1 similar to gp:CPASPC_1 aspC gene product from Clostridium perfringens (160 aa); 96.9% identity in 159 aa overlap; class V aminotransferase 1045919 aspC 989114 aspC Clostridium perfringens str. 13 class V aminotransferase NP_561770.1 1044777 D 195102 CDS NP_561771.1 18309837 989115 1046108..1046647 1 NC_003366.1 similar to gp:AF202316_3 rubrerythrin from Moorella thermoacetica (191 aa); 55.4% identity in 184 aa overlap; rubrerythrin 1046647 rubY 989115 rubY Clostridium perfringens str. 13 rubrerythrin NP_561771.1 1046108 D 195102 CDS NP_561772.1 18309838 989116 1047164..1050232 1 NC_003366.1 similar to gp:AP001509_229 alpha-mannosidase from Bacillus halodurans (1039 aa); 32.8% identity in 1081 aa overlap; alpha-mannosidase 1050232 989116 CPE0856 Clostridium perfringens str. 13 alpha-mannosidase NP_561772.1 1047164 D 195102 CDS NP_561773.1 18309839 989117 complement(1050489..1051046) 1 NC_003366.1 similar to gp:AP001510_12 BH0837 gene product from Bacillus halodurans (197 aa); 31.6% identity in 177 aa overlap; hypothetical protein 1051046 989117 CPE0857 Clostridium perfringens str. 13 hypothetical protein NP_561773.1 1050489 R 195102 CDS NP_561774.1 18309840 989118 1051286..1052458 1 NC_003366.1 similar to sp:ADHA_BACSU PROBABLE NADH-DEPENDENT BUTANOL DEHYDROGENASE 1 (EC 1.1.1.-) from Bacillus subtilis (387 aa); 48.2% identity in 390 aa overlap; NADH-dependent butanol dehydrogenase 1052458 bdhA 989118 bdhA Clostridium perfringens str. 13 NADH-dependent butanol dehydrogenase NP_561774.1 1051286 D 195102 CDS NP_561775.1 18309841 989119 1052896..1053834 1 NC_003366.1 similar to gp:AP001516_160 BH2731 gene product from Bacillus halodurans (371 aa); 25.3% identity in 316 aa overlap; carbohydrate diacid regulator 1053834 989119 CPE0859 Clostridium perfringens str. 13 carbohydrate diacid regulator NP_561775.1 1052896 D 195102 CDS NP_561776.1 18309842 989120 1053981..1055240 1 NC_003366.1 similar to sp:Y092_HAEIN HYPOTHETICAL PROTEIN HI0092 from Haemophilus influenzae (strain Rd KW20) (419 aa); 60.8% identity in 395 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; gluconate permease 1055240 989120 CPE0860 Clostridium perfringens str. 13 gluconate permease NP_561776.1 1053981 D 195102 CDS NP_561777.1 18309843 989121 1055464..1056585 1 NC_003366.1 similar to sp:YHAD_HAEIN HYPOTHETICAL PROTEIN HI0091 from Haemophilus influenzae (strain Rd KW20) (378 aa); 51.2% identity in 373 aa overlap; hypothetical protein 1056585 989121 CPE0861 Clostridium perfringens str. 13 hypothetical protein NP_561777.1 1055464 D 195102 CDS NP_561778.1 18309844 989122 1056913..1058349 1 NC_003366.1 similar to sp:DEAD_BACSU PROBABLE ATP-DEPENDENT RNA HELICASE DEAD from Bacillus subtilis (479 aa); 49.2% identity in 476 aa overlap; ATP-dependent RNA helicase DeaD 1058349 deaD 989122 deaD Clostridium perfringens str. 13 ATP-dependent RNA helicase DeaD NP_561778.1 1056913 D 195102 CDS NP_561779.1 18309845 989123 1058504..1058962 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1058962 989123 CPE0863 Clostridium perfringens str. 13 hypothetical protein NP_561779.1 1058504 D 195102 CDS NP_561780.1 18309846 989124 1059103..1060527 1 NC_003366.1 similar to gpu:AE004241_1 conserved hypothetical protein from Vibrio cholerae (458 aa); 30.1% identity in 442 aa overlap. 12 transmembrane regions were found by PSORT.; MATE efflux family protein 1060527 989124 CPE0864 Clostridium perfringens str. 13 MATE efflux family protein NP_561780.1 1059103 D 195102 CDS NP_561781.1 18309847 989125 1060634..1060807 1 NC_003366.1 no significant homology.; hypothetical protein 1060807 989125 CPE0865 Clostridium perfringens str. 13 hypothetical protein NP_561781.1 1060634 D 195102 CDS NP_561782.1 18309848 989126 1061148..1067462 1 NC_003366.1 partially similar to sp:ANAG_HUMAN ALPHA-N-ACETYLGLUCOSAMINIDASE PRECURSOR (EC 3.2.1.50) (N-ACETYL-ALPHA- GLUCOSAMINIDASE) (NAG) from Homo sapiens (743 aa); 29.4% identity in 704 aa overlap; alpha-N-acetylglucosaminidase 1067462 989126 CPE0866 Clostridium perfringens str. 13 alpha-N-acetylglucosaminidase NP_561782.1 1061148 D 195102 CDS NP_561783.1 18309849 989127 1067722..1067901 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1067901 989127 CPE0867 Clostridium perfringens str. 13 hypothetical protein NP_561783.1 1067722 D 195102 CDS NP_561784.1 18309850 989128 complement(1068014..1069174) 1 NC_003366.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 1069174 alr 989128 alr Clostridium perfringens str. 13 alanine racemase NP_561784.1 1068014 R 195102 CDS NP_561785.1 18309851 989129 1069713..1070282 1 NC_003366.1 similar to pir:H75040 ribosomal protein s18 alanine acetyltransferase related PAB0870 from Pyrococcus abyssi (strain Orsay) (173 aa); 31.3% identity in 144 aa overlap; GNAT family acetyltransferase 1070282 989129 CPE0869 Clostridium perfringens str. 13 GNAT family acetyltransferase NP_561785.1 1069713 D 195102 CDS NP_561786.1 18309852 989130 complement(1070334..1071452) 1 NC_003366.1 similar to gpu:AP001520_63 two-component sensor histidine kinase from Bacillus halodurans (538 aa); 28% identity in 193 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; two-component sensor histidine kinase 1071452 989130 CPE0870 Clostridium perfringens str. 13 two-component sensor histidine kinase NP_561786.1 1070334 R 195102 CDS NP_561787.1 18309853 989131 complement(1071723..1072286) 1 NC_003366.1 similar to gp:AF012132_4 AgrB from Staphylococcus epidermidis (195 aa); 27.5% identity in 142 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 1072286 989131 CPE0871 Clostridium perfringens str. 13 hypothetical protein NP_561787.1 1071723 R 195102 CDS NP_561788.1 18309854 989132 1072648..1074423 1 NC_003366.1 similar to pir:D81414 probable aminopeptidase Cj0653c from Campylobacter jejuni (strain NCTC 11168) (596 aa); 44.5% identity in 587 aa overlap; metallopeptidase, M24 family 1074423 989132 CPE0872 Clostridium perfringens str. 13 metallopeptidase, M24 family NP_561788.1 1072648 D 195102 CDS NP_561789.1 18309855 989133 1074643..1075044 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1075044 989133 CPE0873 Clostridium perfringens str. 13 hypothetical protein NP_561789.1 1074643 D 195102 CDS NP_561790.1 18309856 989134 1075169..1075387 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1075387 989134 CPE0874 Clostridium perfringens str. 13 hypothetical protein NP_561790.1 1075169 D 195102 CDS NP_561791.1 18309857 989135 1075490..1076617 1 NC_003366.1 similar to pir:D72513 probable aminopeptidase APE2081 from Aeropyrum pernix (strain K1) (382 aa); 40.6% identity in 377 aa overlap; metalloprotease 1076617 989135 CPE0875 Clostridium perfringens str. 13 metalloprotease NP_561791.1 1075490 D 195102 CDS NP_561792.1 18309858 989136 1076721..1077164 1 NC_003366.1 partially similar to sp:TTR_PSESY ACETYLTRANSFERASE (EC 2.3.1.-) (TABTOXIN RESISTANCE PROTEIN) from Pseudomonas syringae pv. tabaci (177 aa); 35% identity in 60 aa overlap; GNAT family acetyltransferase 1077164 989136 CPE0876 Clostridium perfringens str. 13 GNAT family acetyltransferase NP_561792.1 1076721 D 195102 CDS NP_561793.1 18309859 989137 complement(1077347..1078012) 1 NC_003366.1 similar to gpu:AP001512_265 BH1678 gene product from Bacillus halodurans (290 aa); 25.1% identity in 187 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 1078012 989137 CPE0877 Clostridium perfringens str. 13 hypothetical protein NP_561793.1 1077347 R 195102 CDS NP_561794.1 18309860 989138 complement(1078174..1079346) 1 NC_003366.1 similar to gp:CPIS1136_1 C.perfringens IS1136 DNA from Clostridium perfringens (122 aa); 64.8% identity in 125 aa overlap; IS1136; transposase 1079346 989138 CPE0878 Clostridium perfringens str. 13 transposase NP_561794.1 1078174 R 195102 CDS NP_561795.1 18309861 989139 1080208..1080750 1 NC_003366.1 similar to gp:SCF56_14 acetyltransferase from Streptomyces coelicolor A3(2) (173 aa); 36.5% identity in 167 aa overlap; GNAT family acetyltransferase 1080750 989139 CPE0879 Clostridium perfringens str. 13 GNAT family acetyltransferase NP_561795.1 1080208 D 195102 CDS NP_561796.1 18309862 989140 complement(1081006..1081761) 1 NC_003366.1 no significant homology. 4 transmembrane regions were found by PSORT.; hypothetical protein 1081761 989140 CPE0880 Clostridium perfringens str. 13 hypothetical protein NP_561796.1 1081006 R 195102 CDS NP_561797.1 18309863 989141 1081969..1085862 1 NC_003366.1 similar to sp:NAGH_CLOPE HYALURONOGLUCOSAMINIDASE PRECURSOR (EC 3.2.1.35) (HYALURONIDASE) (MU TOXIN) from Clostridium perfringens (1042 aa); 25.7% identity in 1006 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hyaluronidase 1085862 nagI 989141 nagI Clostridium perfringens str. 13 hyaluronidase NP_561797.1 1081969 D 195102 CDS NP_561798.1 18309864 989142 complement(1086183..1086503) 1 NC_003366.1 similar to pir:A72336 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (106 aa); 54.8% identity in 104 aa overlap; hypothetical protein 1086503 989142 CPE0882 Clostridium perfringens str. 13 hypothetical protein NP_561798.1 1086183 R 195102 CDS NP_561799.1 18309865 989143 1086932..1087120 1 NC_003366.1 no significant homology.; hypothetical protein 1087120 989143 CPE0883 Clostridium perfringens str. 13 hypothetical protein NP_561799.1 1086932 D 195102 CDS NP_561800.1 18309866 989144 1087176..1087991 1 NC_003366.1 similar to pir:H75077 abc transporter, ATP-binding protein PAB1696 from Pyrococcus abyssi (strain Orsay) (253 aa); 41.9% identity in 236 aa overlap; ATP-binding protein; ABC transporter 1087991 989144 CPE0884 Clostridium perfringens str. 13 ABC transporter NP_561800.1 1087176 D 195102 CDS NP_561801.1 18309867 989145 1087988..1089637 1 NC_003366.1 no significant homology.; hypothetical protein 1089637 989145 CPE0885 Clostridium perfringens str. 13 hypothetical protein NP_561801.1 1087988 D 195102 CDS NP_561802.1 18309868 989146 complement(1089786..1090571) 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; LysM domain-containing protein 1090571 989146 CPE0886 Clostridium perfringens str. 13 LysM domain-containing protein NP_561802.1 1089786 R 195102 CDS NP_561803.1 18309869 989147 complement(1090894..1091445) 1 NC_003366.1 similar to pir:F70426 conserved hypothetical protein aq_1457 from Aquifex aeolicus (210 aa); 32.3% identity in 158 aa overlap; hypothetical protein 1091445 989147 CPE0887 Clostridium perfringens str. 13 hypothetical protein NP_561803.1 1090894 R 195102 CDS NP_561804.1 18309870 989148 1091766..1092416 1 NC_003366.1 similar to gpu:AP001511_170 BH1281 gene product from Bacillus halodurans (207 aa); 33% identity in 209 aa overlap; pyrophosphatase, MutT/nudix family 1092416 989148 CPE0888 Clostridium perfringens str. 13 pyrophosphatase, MutT/nudix family NP_561804.1 1091766 D 195102 CDS NP_561805.1 18309871 989149 1092507..1092926 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1092926 989149 CPE0889 Clostridium perfringens str. 13 hypothetical protein NP_561805.1 1092507 D 195102 CDS NP_561806.1 18309872 989150 1093292..1093546 1 NC_003366.1 similar to pir:B81322 probable integral membrane protein (dedA homolog) Cj1168c from Campylobacter jejuni (strain NCTC 11168) (200 aa); 37.5% identity in 80 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing). N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1093546 989150 CPE0890 Clostridium perfringens str. 13 hypothetical protein NP_561806.1 1093292 D 195102 CDS NP_561807.1 18309873 989151 1093462..1093917 1 NC_003366.1 similar to pir:B81322 probable integral membrane protein (dedA homolog) Cj1168c from Campylobacter jejuni (strain NCTC 11168) (200 aa); 38.2% identity in 76 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing). 2 transmembrane regions were found by PSORT.; hypothetical protein 1093917 989151 CPE0891 Clostridium perfringens str. 13 hypothetical protein NP_561807.1 1093462 D 195102 CDS NP_561808.1 18309874 989152 1094185..1095315 1 NC_003366.1 similar to sp:ADH1_CLOAB NADPH-DEPENDENT BUTANOL DEHYDROGENASE (EC 1.1.1.-) (BDH) from Clostridium acetobutylicum (370 aa); 44.5% identity in 371 aa overlap; NADPH-dependent butanol dehydrogenase 1095315 989152 CPE0892 Clostridium perfringens str. 13 NADPH-dependent butanol dehydrogenase NP_561808.1 1094185 D 195102 CDS NP_561809.1 18309875 989153 1095669..1096019 1 NC_003366.1 similar to sp:PDUU_SALTY PROPANEDIOL UTILIZATION PROTEIN PDUU from Salmonella enterica serovar Typhimurium (116 aa); 61.4% identity in 114 aa overlap; propanediol utilization protein 1096019 pduU 989153 pduU Clostridium perfringens str. 13 propanediol utilization protein NP_561809.1 1095669 D 195102 CDS NP_561810.1 18309876 989154 1096023..1096457 1 NC_003366.1 similar to sp:PDUV_SALTY PROPANEDIOL UTILIZATION PROTEIN PDUV from Salmonella enterica serovar Typhimurium (150 aa); 41.5% identity in 142 aa overlap. 1 transmembrane region was found by PSORT; propanediol utilization protein 1096457 pduV 989154 pduV Clostridium perfringens str. 13 propanediol utilization protein NP_561810.1 1096023 D 195102 CDS NP_561811.1 18309877 989155 1096475..1097050 1 NC_003366.1 similar to pir:T35758 probable response regulator from Streptomyces coelicolor (218 aa); 38.5% identity in 182 aa overlap; two-component response regulator 1097050 989155 CPE0895 Clostridium perfringens str. 13 two-component response regulator NP_561811.1 1096475 D 195102 CDS NP_561812.1 18309878 989156 1097054..1098481 1 NC_003366.1 similar to pir:E70596 hypothetical protein Rv3220c from Mycobacterium tuberculosis (strain H37RV) (501 aa); 25.8% identity in 461 aa overlap. Also similar to many histidine kinases; two-component sensor histidine kinase 1098481 989156 CPE0896 Clostridium perfringens str. 13 two-component sensor histidine kinase NP_561812.1 1097054 D 195102 CDS NP_561813.1 18309879 989157 1098691..1100124 1 NC_003366.1 ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase 1100124 eutA 989157 eutA Clostridium perfringens str. 13 reactivating factor for ethanolamine ammonia lyase NP_561813.1 1098691 D 195102 CDS NP_561814.1 18309880 989158 1100143..1101510 1 NC_003366.1 similar to sp:EUTB_ECOLI ETHANOLAMINE AMMONIA-LYASE HEAVY CHAIN (EC 4.3.1.7) from Escherichia coli (453 aa); 61.7% identity in 452 aa overlap; ethanolamine ammonia-lyase large subunit 1101510 eutB 989158 eutB Clostridium perfringens str. 13 ethanolamine ammonia-lyase large subunit NP_561814.1 1100143 D 195102 CDS NP_561815.1 18309881 989159 1101527..1102414 1 NC_003366.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 1102414 eutC 989159 eutC Clostridium perfringens str. 13 ethanolamine ammonia-lyase small subunit NP_561815.1 1101527 D 195102 CDS NP_561816.1 18309882 989160 1102436..1103089 1 NC_003366.1 similar to sp:EUTL_ECOLI ETHANOLAMINE UTILIZATION PROTEIN EUTL from Escherichia coli (219 aa); 49.1% identity in 212 aa overlap; ethanolamine utilization protein 1103089 eutL 989160 eutL Clostridium perfringens str. 13 ethanolamine utilization protein NP_561816.1 1102436 D 195102 CDS NP_561817.1 18309883 989161 1103102..1103887 1 NC_003366.1 partially similar to gp:AF026270_10 PduJ from Salmonella enterica serovar Typhimurium (91 aa); 50.6% identity in 87 aa overlap. 1 transmembrane region was found by PSORT; propanediol utilization protein 1103887 pduJ 989161 pduJ Clostridium perfringens str. 13 propanediol utilization protein NP_561817.1 1103102 D 195102 CDS NP_561818.1 18309884 989162 1103887..1105365 1 NC_003366.1 similar to N-termminal of pir:DEEC acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) / alcohol dehydrogenase (EC 1.1.1.1) from Escherichia coli (891 aa); 41.1% identity in 440 aa overlap. 1 transmembrane region was found by PSORT; alcohol dehydrogenase 1105365 adhE 989162 adhE Clostridium perfringens str. 13 alcohol dehydrogenase NP_561818.1 1103887 D 195102 CDS NP_561819.1 18309885 989163 1105721..1106011 1 NC_003366.1 similar to prf:2520232K pduJ gene from Salmonella enterica (91 aa); 58% identity in 88 aa overlap; propanediol utilization protein 1106011 pduJ 989163 pduJ Clostridium perfringens str. 13 propanediol utilization protein NP_561819.1 1105721 D 195102 CDS NP_561820.1 18309886 989164 1106050..1106865 1 NC_003366.1 similar to sp:EUTT_ECOLI ETHANOLAMINE UTILIZATION COBALAMIN ADENOSYLTRANSFERASE (EC 2.5.1.17) from Escherichia coli (267 aa); 30.4% identity in 217 aa overlap; ethanolamine utilization cobalamin adenosyltransferase 1106865 eutT 989164 eutT Clostridium perfringens str. 13 ethanolamine utilization cobalamin adenosyltransferase NP_561820.1 1106050 D 195102 CDS NP_561821.1 18309887 989165 1106875..1107510 1 NC_003366.1 similar to prf:2520232M pduL gene from Salmonella enterica (210 aa); 53.5% identity in 198 aa overlap; propanediol utilization protein 1107510 pduL 989165 pduL Clostridium perfringens str. 13 propanediol utilization protein NP_561821.1 1106875 D 195102 CDS NP_561822.1 18309888 989166 1107716..1108474 1 NC_003366.1 no significant homology.; hypothetical protein 1108474 989166 CPE0906 Clostridium perfringens str. 13 hypothetical protein NP_561822.1 1107716 D 195102 CDS NP_561823.1 18309889 989167 1108622..1108894 1 NC_003366.1 similar to sp:EUTN_SALTY ETHANOLAMINE UTILIZATION PROTEIN EUTN from Salmonella typhimurium (100 aa); 34.5% identity in 87 aa overlap; ethanolamine utilization protein 1108894 eutN 989167 eutN Clostridium perfringens str. 13 ethanolamine utilization protein NP_561823.1 1108622 D 195102 CDS NP_561824.1 18309890 989168 1108896..1109450 1 NC_003366.1 similar to gp:AF026270_19 PduT from Salmonella typhimurium (184 aa); 37.5% identity in 184 aa overlap; propanediol utilization protein 1109450 pduT 989168 pduT Clostridium perfringens str. 13 propanediol utilization protein NP_561824.1 1108896 D 195102 CDS NP_561825.1 18309891 989169 1109501..1110598 1 NC_003366.1 similar to sp:EUTH_ECOLI ETHANOLAMINE UTILIZATION PROTEIN EUTH ( ETHANOLAMINE TRANSPORTER) from Escherichia coli (370 aa); 48.4% identity in 353 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; ethanolamine utilization protein 1110598 eutH 989169 eutH Clostridium perfringens str. 13 ethanolamine utilization protein NP_561825.1 1109501 D 195102 CDS NP_561826.1 18309892 989170 1110601..1111074 1 NC_003366.1 similar to sp:EUTQ_SALTY ETHANOLAMINE UTILIZATION PROTEIN EUTQ from Salmonella typhimurium (229 aa); 36.4% identity in 151 aa overlap; ethanolamine utilization protein 1111074 eutQ 989170 eutQ Clostridium perfringens str. 13 ethanolamine utilization protein NP_561826.1 1110601 D 195102 CDS NP_561827.1 18309893 989171 1111442..1111918 1 NC_003366.1 similar to sp:GPO_LACLC GLUTATHIONE PEROXIDASE (EC 1.11.1.9) from Lactococcus lactis (157 aa); 59.2% identity in 157 aa overlap; glutathione peroxidase 1111918 bsaA 989171 bsaA Clostridium perfringens str. 13 glutathione peroxidase NP_561827.1 1111442 D 195102 CDS NP_561828.1 18309894 989172 1112351..1112896 1 NC_003366.1 similar to pir:B70351 ribosomal-protein-alanine acetyltransferase from Aquifex aeolicus (154 aa); 28.2% identity in 78 aa overlap; hypothetical protein 1112896 989172 CPE0912 Clostridium perfringens str. 13 hypothetical protein NP_561828.1 1112351 D 195102 CDS NP_561829.1 18309895 989173 1113188..1113499 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1113499 989173 CPE0913 Clostridium perfringens str. 13 hypothetical protein NP_561829.1 1113188 D 195102 CDS NP_561830.1 18309896 989174 1113813..1115453 1 NC_003366.1 partially similar to pir:A70399 conserved hypothetical protein aq_1151 from Aquifex aeolicus (814 aa); 30% identity in 257 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1115453 989174 CPE0914 Clostridium perfringens str. 13 hypothetical protein NP_561830.1 1113813 D 195102 CDS NP_561831.1 18309897 989175 1115535..1116155 1 NC_003366.1 similar to pir:T17189 conserved hypothetical protein CAB06296 from Chlorobium vibrioforme (192 aa); 40.9% identity in 181 aa overlap; NADPH-dependent FMN reductase 1116155 989175 CPE0915 Clostridium perfringens str. 13 NADPH-dependent FMN reductase NP_561831.1 1115535 D 195102 CDS NP_561832.1 18309898 989176 1116597..1117022 1 NC_003366.1 no significant homology.; hypothetical protein 1117022 989176 CPE0916 Clostridium perfringens str. 13 hypothetical protein NP_561832.1 1116597 D 195102 CDS NP_561833.1 18309899 989177 1117404..1119164 1 NC_003366.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1119164 nrdD 989177 nrdD Clostridium perfringens str. 13 anaerobic ribonucleoside triphosphate reductase NP_561833.1 1117404 D 195102 CDS NP_561834.1 18309900 989178 1119215..1119619 1 NC_003366.1 no significant homology.; hypothetical protein 1119619 989178 CPE0918 Clostridium perfringens str. 13 hypothetical protein NP_561834.1 1119215 D 195102 CDS NP_561835.1 18309901 989179 1119814..1120536 1 NC_003366.1 no significant homology.; hypothetical protein 1120536 989179 CPE0919 Clostridium perfringens str. 13 hypothetical protein NP_561835.1 1119814 D 195102 CDS NP_561836.1 18309902 989180 complement(1120741..1120959) 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1120959 989180 CPE0920 Clostridium perfringens str. 13 hypothetical protein NP_561836.1 1120741 R 195102 CDS NP_561837.1 18309903 989181 1121179..1121721 1 NC_003366.1 similar to pir:C75136 hypothetical protein PAB0597 from Pyrococcus abyssi (strain Orsay) (187 aa); 29.6% identity in 179 aa overlap. 1 transmembrane region was found by PSORT; nitroreductase 1121721 989181 CPE0921 Clostridium perfringens str. 13 nitroreductase NP_561837.1 1121179 D 195102 CDS NP_561838.1 18309904 989182 1122001..1122627 1 NC_003366.1 no significant homology.; hypothetical protein 1122627 989182 CPE0922 Clostridium perfringens str. 13 hypothetical protein NP_561838.1 1122001 D 195102 CDS NP_561839.1 18309905 989183 1122654..1123067 1 NC_003366.1 no significant homology.; hypothetical protein 1123067 989183 CPE0923 Clostridium perfringens str. 13 hypothetical protein NP_561839.1 1122654 D 195102 CDS NP_561840.1 18309906 989184 1123136..1123966 1 NC_003366.1 similar to pir:E69013 conserved hypothetical protein MTH1101 from Methanobacterium thermoautotrophicum (strain Delta H) (260 aa); 30% identity in 273 aa overlap; metallo-beta-lactamase 1123966 989184 CPE0924 Clostridium perfringens str. 13 metallo-beta-lactamase NP_561840.1 1123136 D 195102 CDS NP_561841.1 18309907 989185 1124142..1124318 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1124318 989185 CPE0925 Clostridium perfringens str. 13 hypothetical protein NP_561841.1 1124142 D 195102 CDS NP_561842.1 18309908 989186 1124547..1125251 1 NC_003366.1 similar to sp:GLPF_THEMA PROBABLE GLYCEROL UPTAKE FACILITATOR PROTEIN from Thermotoga maritima (strain MSB8) (234 aa); 61.5% identity in 234 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; glycerol uptake facilitator protein 1125251 glpF 989186 glpF Clostridium perfringens str. 13 glycerol uptake facilitator protein NP_561842.1 1124547 D 195102 CDS NP_561843.1 18309909 989187 1125438..1126670 1 NC_003366.1 similar to gpu:AP001514_116 BH2110 gene product from Bacillus halodurans (585 aa); 36.5% identity in 233 aa overlap. Also similar to many histidine kinases. 1 transmembrane region was found by PSORT; sensor histidine kinase 1126670 989187 CPE0927 Clostridium perfringens str. 13 sensor histidine kinase NP_561843.1 1125438 D 195102 CDS NP_561844.1 18309910 989188 1126690..1127442 1 NC_003366.1 similar to gpu:AP001519_194 two-component response regulator from Bacillus halodurans (257 aa); 30.8% identity in 247 aa overlap; two-component response regulator 1127442 989188 CPE0928 Clostridium perfringens str. 13 two-component response regulator NP_561844.1 1126690 D 195102 CDS NP_561845.1 18309911 989189 1127780..1129444 1 NC_003366.1 similar to prf:2223300A adenosylcobalamin-dependent glycerol dehydrogenase from Klebsiella pneumoniae (555 aa); 80.8% identity in 553 aa overlap; coenzyme B12-dependent glycerol dehydrogenase large subunit 1129444 989189 CPE0929 Clostridium perfringens str. 13 coenzyme B12-dependent glycerol dehydrogenase large subunit NP_561845.1 1127780 D 195102 CDS NP_561846.1 18309912 989190 1129452..1130024 1 NC_003366.1 similar to prf:2222228B coenzyme B12-dependent glycerol dehydratase from Citrobacter freundii (194 aa); 60.9% identity in 184 aa overlap; coenzyme B12-dependent glycerol dehydrogenase medium subunit 1130024 989190 CPE0930 Clostridium perfringens str. 13 coenzyme B12-dependent glycerol dehydrogenase medium subunit NP_561846.1 1129452 D 195102 CDS NP_561847.1 18309913 989191 1130044..1130469 1 NC_003366.1 similar to prf:2417317C B12-dependent glycerol dehydrogenase:SUBUNIT=small from Clostridium pasteurianum (146 aa); 70.5% identity in 132 aa overlap; coenzyme B12-dependent glycerol dehydrogenase small subunit 1130469 989191 CPE0931 Clostridium perfringens str. 13 coenzyme B12-dependent glycerol dehydrogenase small subunit NP_561847.1 1130044 D 195102 CDS NP_561848.1 18309914 989192 1130486..1132336 1 NC_003366.1 similar to prf:2417317D ORF Z from Clostridium pasteurianum (602 aa); 69.5% identity in 603 aa overlap. 1 transmembrane region was found by PSORT; glycerol dehydratase reactivation factor, large subunit 1132336 989192 CPE0932 Clostridium perfringens str. 13 glycerol dehydratase reactivation factor, large subunit NP_561848.1 1130486 D 195102 CDS NP_561849.1 18309915 989193 1132329..1132679 1 NC_003366.1 similar to sp:YDHX_CITFR HYPOTHETICAL 12.5 KDA PROTEIN IN DHAR-DHAT INTERGENIC REGION (ORFX) from Citrobacter freundii (117 aa); 40.5% identity in 74 aa overlap; glycerol dehydratase reactivation factor, small subunit 1132679 989193 CPE0933 Clostridium perfringens str. 13 glycerol dehydratase reactivation factor, small subunit NP_561849.1 1132329 D 195102 CDS NP_561850.1 18309916 989194 1132698..1133210 1 NC_003366.1 similar to sp:YDHW_CITFR HYPOTHETICAL 19.8 KDA PROTEIN IN DHAR-DHAT INTERGENIC REGION (ORFW) from Citrobacter freundii (176 aa); 59.6% identity in 166 aa overlap; hypothetical protein 1133210 989194 CPE0934 Clostridium perfringens str. 13 hypothetical protein NP_561850.1 1132698 D 195102 CDS NP_561851.1 18309917 989195 1133234..1133662 1 NC_003366.1 similar to prf:2324292C ORF Y from Clostridium pasteurianum (143 aa); 52.2% identity in 136 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1133662 989195 CPE0935 Clostridium perfringens str. 13 hypothetical protein NP_561851.1 1133234 D 195102 CDS NP_561852.1 18309918 989196 1133756..1134913 1 NC_003366.1 similar to prf:2324292D 1,3-propanediol dehydrogenase from Clostridium pasteurianum (385 aa); 85.7% identity in 385 aa overlap; 1,3-propanediol dehydrogenase 1134913 989196 CPE0936 Clostridium perfringens str. 13 1,3-propanediol dehydrogenase NP_561852.1 1133756 D 195102 CDS NP_561853.1 18309919 989197 1135498..1136967 1 NC_003366.1 similar to gp:CLOPBG_4 membrane-spanning transporter protein from Clostridium perfringens (495 aa); 33.1% identity in 417 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; amino acid permease 1136967 989197 CPE0937 Clostridium perfringens str. 13 amino acid permease NP_561853.1 1135498 D 195102 CDS NP_561854.1 18309920 989198 1137256..1137930 1 NC_003366.1 similar to pir:B71309 hypothetical protein TP0572 from Treponema pallidum (360 aa); 33.3% identity in 120 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 1137930 989198 CPE0938 Clostridium perfringens str. 13 hypothetical protein NP_561854.1 1137256 D 195102 CDS NP_561855.1 18309921 989199 1138271..1138783 1 NC_003366.1 similar to pir:G81269 probable acetyltransferase Cj1715 from Campylobacter jejuni (strain NCTC 11168) (176 aa); 31% identity in 158 aa overlap; GNAT family acetyltransferase 1138783 989199 CPE0939 Clostridium perfringens str. 13 GNAT family acetyltransferase NP_561855.1 1138271 D 195102 CDS NP_561856.1 18309922 989200 complement(1138851..1139621) 1 NC_003366.1 no significant homology.; hypothetical protein 1139621 989200 CPE0940 Clostridium perfringens str. 13 hypothetical protein NP_561856.1 1138851 R 195102 CDS NP_561857.1 18309923 989201 complement(1139727..1140545) 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1140545 989201 CPE0941 Clostridium perfringens str. 13 hypothetical protein NP_561857.1 1139727 R 195102 CDS NP_561858.1 18309924 989202 complement(1140656..1141015) 1 NC_003366.1 similar to pir:S74723 hypothetical protein sll0939 from Synechocystis sp. (strain PCC 6803) (125 aa); 30.2% identity in 96 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1141015 989202 CPE0942 Clostridium perfringens str. 13 hypothetical protein NP_561858.1 1140656 R 195102 CDS NP_561859.1 18309925 989203 complement(1141047..1141391) 1 NC_003366.1 similar to pir:C75409 conserved hypothetical protein from Deinococcus radiodurans (109 aa); 44.6% identity in 56 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1141391 989203 CPE0943 Clostridium perfringens str. 13 hypothetical protein NP_561859.1 1141047 R 195102 CDS NP_561860.1 18309926 989204 1141575..1142564 1 NC_003366.1 similar to sp:PLDB_ECOLI LYSOPHOSPHOLIPASE L2 (EC 3.1.1.5) (LECITHINASE B) from Escherichia coli (340 aa); 30.2% identity in 301 aa overlap; lysophospholipase 1142564 pldB 989204 pldB Clostridium perfringens str. 13 lysophospholipase NP_561860.1 1141575 D 195102 CDS NP_561861.1 18309927 989205 complement(1142621..1143277) 1 NC_003366.1 no significant homology. S.D. unclear.; hypothetical protein 1143277 989205 CPE0945 Clostridium perfringens str. 13 hypothetical protein NP_561861.1 1142621 R 195102 CDS NP_561862.1 18309928 989206 complement(1143533..1144414) 1 NC_003366.1 no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 1144414 989206 CPE0946 Clostridium perfringens str. 13 hypothetical protein NP_561862.1 1143533 R 195102 CDS NP_561863.1 18309929 989207 1145169..1146476 1 NC_003366.1 similar to pir:D81418 probable transmembrane symporter Cj0025c from Campylobacter jejuni (strain NCTC 11168) (461 aa); 39.3% identity in 374 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; transmembrane symporter 1146476 989207 CPE0947 Clostridium perfringens str. 13 transmembrane symporter NP_561863.1 1145169 D 195102 CDS NP_561864.1 18309930 989208 1146821..1147510 1 NC_003366.1 similar to gpu:AP001509_258 two-component response regulator from Bacillus halodurans (234 aa); 41.9% identity in 222 aa overlap. 1 transmembrane region was found by PSORT; DNA-binding response regulator 1147510 989208 CPE0948 Clostridium perfringens str. 13 DNA-binding response regulator NP_561864.1 1146821 D 195102 CDS NP_561865.1 18309931 989209 1147720..1148640 1 NC_003366.1 similar to sp:BCRA_BACLI BACITRACIN TRANSPORT ATP-BINDING PROTEIN BCRA from Bacillus licheniformis (306 aa); 42.4% identity in 302 aa overlap; ATP-binding protein; ABC transporter 1148640 989209 CPE0949 Clostridium perfringens str. 13 ABC transporter NP_561865.1 1147720 D 195102 CDS NP_561866.1 18309932 989210 1148633..1149385 1 NC_003366.1 no significant homology. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 1149385 989210 CPE0950 Clostridium perfringens str. 13 hypothetical protein NP_561866.1 1148633 D 195102 CDS NP_561867.1 18309933 989211 1149399..1150304 1 NC_003366.1 similar to prf:1502267A phoR gene from Bacillus subtilis (579 aa); 32.2% identity in 261 aa overlap. N-terminal signal sequence was found by PSORT; sensor histidine kinase 1150304 989211 CPE0951 Clostridium perfringens str. 13 sensor histidine kinase NP_561867.1 1149399 D 195102 CDS NP_561868.1 18309934 989212 complement(1150404..1150631) 1 NC_003366.1 no significant homology.; hypothetical protein 1150631 989212 CPE0952 Clostridium perfringens str. 13 hypothetical protein NP_561868.1 1150404 R 195102 CDS NP_561869.1 18309935 989213 1150930..1152141 1 NC_003366.1 similar to gpu:AP001518_110 BH3279 gene product from Bacillus halodurans (422 aa); 38.9% identity in 396 aa overlap. N-terminal signal sequence was found by PSORT; pyridine nucleotide-disulfide oxidoreductase 1152141 989213 CPE0953 Clostridium perfringens str. 13 pyridine nucleotide-disulfide oxidoreductase NP_561869.1 1150930 D 195102 CDS NP_561870.1 18309936 989214 1152358..1152894 1 NC_003366.1 similar to sp:GPXA_NEIME GLUTATHIONE PEROXIDASE HOMOLOG from Neisseria meningitidis (177 aa); 56.5% identity in 161 aa overlap; glutathione peroxidase 1152894 gpo 989214 gpo Clostridium perfringens str. 13 glutathione peroxidase NP_561870.1 1152358 D 195102 CDS NP_561871.1 18309937 989215 complement(1153011..1154204) 1 NC_003366.1 similar to gp:AB004104_3 ORF10291-3 from Clostridium perfringens (113 aa); 47.5% identity in 40 aa overlap; collagen triple helix repeat protein 1154204 clg 989215 clg Clostridium perfringens str. 13 collagen triple helix repeat protein NP_561871.1 1153011 R 195102 CDS NP_561872.1 18309938 989216 complement(1154306..1154896) 1 NC_003366.1 similar to gp:AB004104_2 ORF10291-2 from Clostridium perfringens (196 aa); 72.4% identity in 196 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; metal-dependent hydrolase 1154896 989216 CPE0956 Clostridium perfringens str. 13 metal-dependent hydrolase NP_561872.1 1154306 R 195102 CDS NP_561873.1 18309939 989217 complement(1155088..1155306) 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1155306 989217 CPE0957 Clostridium perfringens str. 13 hypothetical protein NP_561873.1 1155088 R 195102 CDS NP_561874.1 18309940 989218 1155516..1156130 1 NC_003366.1 similar to gp:AB004104_1 ORF10291-1 from Clostridium perfringens (198 aa); 99.5% identity in 198 aa overlap; mutator MutT protein 1156130 mutT 989218 mutT Clostridium perfringens str. 13 mutator MutT protein NP_561874.1 1155516 D 195102 CDS NP_561875.1 18309941 989219 complement(1156225..1156380) 1 NC_003366.1 no significant homology.; hypothetical protein 1156380 989219 CPE0959 Clostridium perfringens str. 13 hypothetical protein NP_561875.1 1156225 R 195102 CDS NP_561876.1 18309942 989220 1156509..1157150 1 NC_003366.1 similar to pir:G69838 hypothetical protein yisX from Bacillus subtilis (212 aa); 33.3% identity in 162 aa overlap; hypothetical protein 1157150 989220 CPE0960 Clostridium perfringens str. 13 hypothetical protein NP_561876.1 1156509 D 195102 CDS NP_561877.1 18309943 989221 1157357..1157788 1 NC_003366.1 similar to pir:E69857 conserved hypothetical protein ykmA from Bacillus subtilis (147 aa); 53.2% identity in 141 aa overlap; MarR family; MarR family transcriptional regulator 1157788 989221 CPE0961 Clostridium perfringens str. 13 MarR family transcriptional regulator NP_561877.1 1157357 D 195102 CDS NP_561878.1 18309944 989222 1158113..1159072 1 NC_003366.1 no significant homology. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; hypothetical protein 1159072 989222 CPE0962 Clostridium perfringens str. 13 hypothetical protein NP_561878.1 1158113 D 195102 CDS NP_561879.1 18309945 989223 complement(1159176..1160798) 1 NC_003366.1 similar to sp:YJEM_ECOLI HYPOTHETICAL 54.7 KDA PROTEIN IN POXA-PSD INTERGENIC REGION from Escherichia coli (500 aa); 51.5% identity in 491 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; transporter 1160798 989223 CPE0963 Clostridium perfringens str. 13 transporter NP_561879.1 1159176 R 195102 CDS NP_561880.1 18309946 989224 1161203..1161373 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1161373 989224 CPE0964 Clostridium perfringens str. 13 hypothetical protein NP_561880.1 1161203 D 195102 CDS NP_561881.1 18309947 989225 complement(1161697..1163334) 1 NC_003366.1 similar to gpu:AE004307_6 sensory box/GGDEF family protein from Vibrio cholerae (884 aa); 46% identity in 161 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; diguanylate cyclase 1163334 989225 CPE0965 Clostridium perfringens str. 13 diguanylate cyclase NP_561881.1 1161697 R 195102 CDS NP_561882.1 18309948 989226 1163773..1164252 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1164252 989226 CPE0966 Clostridium perfringens str. 13 hypothetical protein NP_561882.1 1163773 D 195102 CDS NP_561883.1 18309949 989227 1164789..1165952 1 NC_003366.1 similar to pir:G71309 probable glutamate/ aspartate transporter from Treponema pallidum (396 aa); 51.5% identity in 355 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; glutamate/ aspartate transporter 1165952 989227 CPE0967 Clostridium perfringens str. 13 glutamate/ aspartate transporter NP_561883.1 1164789 D 195102 CDS NP_561884.1 18309950 989228 1166285..1167280 1 NC_003366.1 no significant homology.; hypothetical protein 1167280 989228 CPE0968 Clostridium perfringens str. 13 hypothetical protein NP_561884.1 1166285 D 195102 CDS NP_561885.1 18309951 989229 1167573..1169483 1 NC_003366.1 partially similar to pir:H81242 conserved hypothetical protein NMB0050 from Neisseria meningitidis (716 aa); 20.4% identity in 289 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; hypothetical protein 1169483 989229 CPE0969 Clostridium perfringens str. 13 hypothetical protein NP_561885.1 1167573 D 195102 CDS NP_561886.1 18309952 989230 complement(1169513..1170967) 1 NC_003366.1 similar to pir:A69845 Na+/H+ antiporter homolog yjbQ from Bacillus subtilis (614 aa); 31.8% identity in 468 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; Na+/H+ antiporter 1170967 989230 CPE0970 Clostridium perfringens str. 13 Na+/H+ antiporter NP_561886.1 1169513 R 195102 CDS NP_561887.1 18309953 989231 complement(1170996..1171616) 1 NC_003366.1 similar to pir:B81534 hypothetical protein CP0835 from Chlamydophila pneumoniae (219 aa); 24.6% identity in 138 aa overlap; hypothetical protein 1171616 989231 CPE0971 Clostridium perfringens str. 13 hypothetical protein NP_561887.1 1170996 R 195102 CDS NP_561888.1 18309954 989232 1171854..1172639 1 NC_003366.1 similar to pir:F75515 probable histidinol phosphatase from Deinococcus radiodurans (strain R1) (260 aa); 26.4% identity in 231 aa overlap; histidinol phosphatase 1172639 hisB 989232 hisB Clostridium perfringens str. 13 histidinol phosphatase NP_561888.1 1171854 D 195102 CDS NP_561889.1 18309955 989233 complement(1172822..1172992) 1 NC_003366.1 no significant homology.; hypothetical protein 1172992 989233 CPE0973 Clostridium perfringens str. 13 hypothetical protein NP_561889.1 1172822 R 195102 CDS NP_561890.1 18309956 989234 complement(1173309..1174328) 1 NC_003366.1 similar to pir:D69856 conserved hypothetical protein ykgB from Bacillus subtilis (349 aa); 34.3% identity in 338 aa overlap; hypothetical protein 1174328 989234 CPE0974 Clostridium perfringens str. 13 hypothetical protein NP_561890.1 1173309 R 195102 CDS NP_561891.1 18309957 989235 1174529..1176469 1 NC_003366.1 similar to prf:2309135A tet(T) gene from Streptococcus pyogenes (651 aa); 31.4% identity in 609 aa overlap. 1 transmembrane region was found by PSORT; tetracycline resistant protein 1176469 989235 CPE0975 Clostridium perfringens str. 13 tetracycline resistant protein NP_561891.1 1174529 D 195102 CDS NP_561892.1 18309958 989236 1176634..1176987 1 NC_003366.1 no significant homology.; hypothetical protein 1176987 989236 CPE0976 Clostridium perfringens str. 13 hypothetical protein NP_561892.1 1176634 D 195102 CDS NP_561893.1 18309959 989237 complement(1177094..1178044) 1 NC_003366.1 partially similar to gp:LPARGCL_1 hypothetical protein from Lactobacillus plantarum (124 aa); 47.7% identity in 109 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 1178044 989237 CPE0977 Clostridium perfringens str. 13 hypothetical protein NP_561893.1 1177094 R 195102 CDS NP_561894.1 18309960 989238 complement(1178435..1179097) 1 NC_003366.1 partially similar to prf:2509287C K transporter-like protein from Lactococcus lactis (170 aa); 64.1% identity in 92 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 1179097 989238 CPE0978 Clostridium perfringens str. 13 hypothetical protein NP_561894.1 1178435 R 195102 CDS NP_561895.1 18309961 989239 complement(1179675..1180187) 1 NC_003366.1 similar to gpu:AP001511_13 ferritin from Bacillus halodurans (169 aa); 49.7% identity in 165 aa overlap; ferritin 1180187 989239 CPE0979 Clostridium perfringens str. 13 ferritin NP_561895.1 1179675 R 195102 CDS NP_561896.1 18309962 989240 complement(1180337..1181155) 1 NC_003366.1 similar to gpu:AF206272_3 transcriptional regulator from Streptococcus mutans (301 aa); 25.2% identity in 266 aa overlap; AraC/XylS family; transcriptional regulator 1181155 989240 CPE0980 Clostridium perfringens str. 13 transcriptional regulator NP_561896.1 1180337 R 195102 CDS NP_561897.1 18309963 989241 1181316..1183148 1 NC_003366.1 partially similar to gpu:AE004147_1 beta-N-acetylhexosaminidase from Vibrio cholerae (637 aa); 23.4% identity in 359 aa overlap; glycosyl hydrolase family protein 1183148 989241 CPE0981 Clostridium perfringens str. 13 glycosyl hydrolase family protein NP_561897.1 1181316 D 195102 CDS NP_561898.1 18309964 989242 1183266..1183733 1 NC_003366.1 no significant homology.; hypothetical protein 1183733 989242 CPE0982 Clostridium perfringens str. 13 hypothetical protein NP_561898.1 1183266 D 195102 CDS NP_561899.1 18309965 989243 complement(1183854..1184630) 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1184630 989243 CPE0983 Clostridium perfringens str. 13 hypothetical protein NP_561899.1 1183854 R 195102 CDS NP_561900.1 18309966 989244 complement(1184746..1186167) 1 NC_003366.1 similar to gpu:AP001512_10 stage V sporulation protein AF from Bacillus halodurans (487 aa); 38% identity in 466 aa overlap. 4 transmembrane regions were found by PSORT.; stage V sporulation protein AF 1186167 spoVAF 989244 spoVAF Clostridium perfringens str. 13 stage V sporulation protein AF NP_561900.1 1184746 R 195102 CDS NP_561901.1 18309967 989245 complement(1186397..1187905) 1 NC_003366.1 similar to sp:YFCC_HAEIN HYPOTHETICAL PROTEIN HI0594. from Haemophilus influenzae (509 aa); 46.9% identity in 493 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; hypothetical protein 1187905 989245 CPE0985 Clostridium perfringens str. 13 hypothetical protein NP_561901.1 1186397 R 195102 CDS NP_561902.1 18309968 989246 1188307..1190178 1 NC_003366.1 similar to pir:T17197 adenylate cyclase homolog from Spirulina platensis (1202 aa); 31.3% identity in 268 aa overlap. Also similar to many two-component sensor histidine kinases; two-component sensor histidine kinase 1190178 989246 CPE0986 Clostridium perfringens str. 13 two-component sensor histidine kinase NP_561902.1 1188307 D 195102 CDS NP_561903.1 18309969 989247 1190402..1191469 1 NC_003366.1 similar to pir:A43577 regulatory protein pfoR from Clostridium perfringens (343 aa); 74.5% identity in 318 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; regulatory protein 1191469 pfoS 989247 pfoS Clostridium perfringens str. 13 regulatory protein NP_561903.1 1190402 D 195102 CDS NP_561904.1 18309970 989248 1191501..1192181 1 NC_003366.1 similar to gpu:AP001515_231 L-serine dehydratase beta subunit from Bacillus halodurans (220 aa); 40.9% identity in 215 aa overlap; L-serine dehydratase subunit beta 1192181 sdhB 989248 sdhB Clostridium perfringens str. 13 L-serine dehydratase subunit beta NP_561904.1 1191501 D 195102 CDS NP_561905.1 18309971 989249 1192185..1193063 1 NC_003366.1 similar to sp:SDHA_PEPAS L-SERINE DEHYDRATASE, ALPHA CHAIN (EC 4.2.1.13) (L-SERINE DEAMINASE) (SDH) (L-SD) from Peptostreptococcus asaccharolyticus (292 aa); 47.9% identity in 282 aa overlap. 3 transmembrane regions were found by PSORT.; L-serine dehydratase subunit alpha 1193063 sdhA 989249 sdhA Clostridium perfringens str. 13 L-serine dehydratase subunit alpha NP_561905.1 1192185 D 195102 CDS NP_561906.1 18309972 989250 complement(1193131..1193865) 1 NC_003366.1 similar to gpu:AE004222_1 conserved hypothetical protein from Vibrio cholerae (310 aa); 37.8% identity in 230 aa overlap; hypothetical protein 1193865 989250 CPE0990 Clostridium perfringens str. 13 hypothetical protein NP_561906.1 1193131 R 195102 CDS NP_561907.1 18309973 989251 1194072..1194818 1 NC_003366.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1194818 truA 989251 truA Clostridium perfringens str. 13 tRNA pseudouridine synthase A NP_561907.1 1194072 D 195102 CDS NP_561908.1 18309974 989252 complement(1194885..1195952) 1 NC_003366.1 similar to pir:H81334 hypothetical protein Cj1270c from Campylobacter jejuni (strain NCTC 11168) (363 aa); 41.7% identity in 348 aa overlap; oxidoreductase, 2-nitropropane dioxygenase 1195952 989252 CPE0992 Clostridium perfringens str. 13 oxidoreductase, 2-nitropropane dioxygenase NP_561908.1 1194885 R 195102 CDS NP_561909.1 18309975 989253 1196153..1196863 1 NC_003366.1 similar to pir:E70790 probable transcription regulator Rv3676 from Mycobacterium tuberculosis (strain H37RV) (224 aa); 29.7% identity in 212 aa overlap. 1 transmembrane region was found by PSORT; Crp/Fnr family; transcriptional regulator 1196863 989253 CPE0993 Clostridium perfringens str. 13 transcriptional regulator NP_561909.1 1196153 D 195102 CDS NP_561910.1 18309976 989254 complement(1196919..1197830) 1 NC_003366.1 similar to pir:D72416 hypothetical protein TM0109 from Thermotoga maritima (strain MSB8) (328 aa); 45.3% identity in 276 aa overlap; radical SAM domain-containing protein 1197830 989254 CPE0994 Clostridium perfringens str. 13 radical SAM domain-containing protein NP_561910.1 1196919 R 195102 CDS NP_561911.1 18309977 989255 1197974..1199008 1 NC_003366.1 similar to pir:C69830 glucanase homolog yhfE from Bacillus subtilis (346 aa); 45% identity in 342 aa overlap; glucanase 1199008 989255 CPE0995 Clostridium perfringens str. 13 glucanase NP_561911.1 1197974 D 195102 CDS NP_561912.1 18309978 989256 1199327..1199998 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1199998 989256 CPE0996 Clostridium perfringens str. 13 hypothetical protein NP_561912.1 1199327 D 195102 CDS NP_561913.1 18309979 989257 1200014..1201693 1 NC_003366.1 no significant homology.; hypothetical protein 1201693 989257 CPE0997 Clostridium perfringens str. 13 hypothetical protein NP_561913.1 1200014 D 195102 CDS NP_561914.1 18309980 989258 1202355..1203995 1 NC_003366.1 similar to sp:SYE_BACSU GLUTAMYL-TRNA SYNTHETASE (EC 6.1.1.17) (GLUTAMATE-TRNA LIGASE) (GLURS). from Bacillus subtilis (483 aa); 33.3% identity in 510 aa overlap; glutamyl-tRNA synthetase 1203995 gltX 989258 gltX Clostridium perfringens str. 13 glutamyl-tRNA synthetase NP_561914.1 1202355 D 195102 CDS NP_561915.1 18309981 989259 1204190..1204345 1 NC_003366.1 no significant homology.; hypothetical protein 1204345 989259 CPE0999 Clostridium perfringens str. 13 hypothetical protein NP_561915.1 1204190 D 195102 CDS NP_561916.1 18309982 989260 1204572..1205186 1 NC_003366.1 similar to pir:B72450 hypothetical protein APE2246 from Aeropyrum pernix (strain K1) (188 aa); 27.2% identity in 151 aa overlap; hypothetical protein 1205186 989260 CPE1000 Clostridium perfringens str. 13 hypothetical protein NP_561916.1 1204572 D 195102 CDS NP_561917.1 18309983 989261 complement(1205280..1206902) 1 NC_003366.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1206902 989261 CPE1001 Clostridium perfringens str. 13 aspartate aminotransferase NP_561917.1 1205280 R 195102 CDS NP_561918.1 18309984 989262 complement(1207034..1208056) 1 NC_003366.1 no significant homology.; hypothetical protein 1208056 989262 CPE1002 Clostridium perfringens str. 13 hypothetical protein NP_561918.1 1207034 R 195102 CDS NP_561919.1 18309985 989263 1208361..1208540 1 NC_003366.1 similar to gpu:AP001515_87 BH2353 gene product from Bacillus halodurans (79 aa); 46.7% identity in 45 aa overlap; hypothetical protein 1208540 989263 CPE1003 Clostridium perfringens str. 13 hypothetical protein NP_561919.1 1208361 D 195102 CDS NP_561920.1 18309986 989264 1208552..1209475 1 NC_003366.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 1209475 hprK 989264 hprK Clostridium perfringens str. 13 HPr kinase/phosphorylase NP_561920.1 1208552 D 195102 CDS NP_561921.1 18309987 989265 1209520..1210449 1 NC_003366.1 similar to C-terminal of pir:S75981 magnesium/cobalt transport protein sll0507 from Synechocystis sp. (strain PCC 6803) (387 aa); 22.4% identity in 263 aa overlap. 2 transmembrane regions were found by PSORT.; divalent cation transporter 1210449 989265 CPE1005 Clostridium perfringens str. 13 divalent cation transporter NP_561921.1 1209520 D 195102 CDS NP_561922.1 18309988 989271 1210516..1211922 1 NC_003366.1 catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1 1211922 989271 CPE1006 Clostridium perfringens str. 13 aminopeptidase 1 NP_561922.1 1210516 D 195102 CDS NP_561923.1 18309989 989281 1212047..1212634 1 NC_003366.1 partially similar to gp:D90740_3 Hypothetical 24.0K protein from Escherichia coli (476 aa); 27.6% identity in 170 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1212634 989281 CPE1007 Clostridium perfringens str. 13 hypothetical protein NP_561923.1 1212047 D 195102 CDS NP_561924.1 18309990 989292 1212707..1213570 1 NC_003366.1 similar to gp:BCE243712_8 YkoW protein from Bacillus cereus (892 aa); 30.9% identity in 278 aa overlap; hypothetical protein 1213570 989292 CPE1008 Clostridium perfringens str. 13 hypothetical protein NP_561924.1 1212707 D 195102 CDS NP_561925.1 18309991 989298 1213738..1214097 1 NC_003366.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1214097 mgsA 989298 mgsA Clostridium perfringens str. 13 methylglyoxal synthase NP_561925.1 1213738 D 195102 CDS NP_561926.1 18309992 989310 1214278..1214613 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1214613 989310 CPE1010 Clostridium perfringens str. 13 hypothetical protein NP_561926.1 1214278 D 195102 CDS NP_561927.1 18309993 989314 1214739..1214999 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1214999 989314 CPE1011 Clostridium perfringens str. 13 hypothetical protein NP_561927.1 1214739 D 195102 CDS NP_561928.1 18309994 989316 1215083..1215463 1 NC_003366.1 similar to pir:G75032 probable translation initiation inhibitor PAB0825 from Pyrococcus abyssi (strain Orsay) (127 aa); 61% identity in 123 aa overlap; endoribonuclease L-PSP 1215463 989316 CPE1012 Clostridium perfringens str. 13 endoribonuclease L-PSP NP_561928.1 1215083 D 195102 CDS NP_561929.1 18309995 989318 1215507..1215752 1 NC_003366.1 no significant homology.; hypothetical protein 1215752 989318 CPE1013 Clostridium perfringens str. 13 hypothetical protein NP_561929.1 1215507 D 195102 CDS NP_561930.1 18309996 989319 complement(1215859..1218495) 1 NC_003366.1 similar to gp:RCAFDXC_3 ORFU1 product, potential FMN-protein from Rhodobacter capsulatus (435 aa); 42.6% identity in 404 aa overlap; rubredoxin/flavodoxin/oxidoreductase 1218495 989319 CPE1014 Clostridium perfringens str. 13 rubredoxin/flavodoxin/oxidoreductase NP_561930.1 1215859 R 195102 CDS NP_561931.1 18309997 989320 complement(1218700..1219542) 1 NC_003366.1 similar to gpu:AP001518_203 BH3372 gene product from Bacillus halodurans (266 aa); 36.3% identity in 240 aa overlap. ATT start; hypothetical protein 1219542 989320 CPE1015 Clostridium perfringens str. 13 hypothetical protein NP_561931.1 1218700 R 195102 CDS NP_561932.1 18309998 989321 1219810..1220400 1 NC_003366.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 1220400 pabA 989321 pabA Clostridium perfringens str. 13 anthranilate synthase component II NP_561932.1 1219810 D 195102 CDS NP_561933.1 18309999 989322 1220406..1221752 1 NC_003366.1 similar to gpu:AP001507_90 para-aminobenzoate synthase component I from Bacillus halodurans (486 aa); 37.3% identity in 405 aa overlap; para-aminobenzoate synthase, component I 1221752 pabB 989322 pabB Clostridium perfringens str. 13 para-aminobenzoate synthase, component I NP_561933.1 1220406 D 195102 CDS NP_561934.1 18310000 989323 1221806..1222540 1 NC_003366.1 similar to gp:AP001507_92 4-amino-4-deoxychorismate lyase from Bacillus halodurans (295 aa); 28.6% identity in 266 aa overlap; 4-amino-4-deoxychorismate lyase 1222540 989323 CPE1018 Clostridium perfringens str. 13 4-amino-4-deoxychorismate lyase NP_561934.1 1221806 D 195102 CDS NP_561935.1 18310001 989325 1222555..1223112 1 NC_003366.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1223112 folE 989325 folE Clostridium perfringens str. 13 GTP cyclohydrolase I NP_561935.1 1222555 D 195102 CDS NP_561936.1 18310002 989326 1223137..1223610 1 NC_003366.1 similar to sp:YBUK_CLOAB HYPOTHETICAL 18.9 KDA PROTEIN IN BUK 3'REGION (ORF4) from Clostridium acetobutylicum (strain NCIMB 8052) (157 aa); 50.3% identity in 155 aa overlap; hypothetical protein 1223610 989326 CPE1020 Clostridium perfringens str. 13 hypothetical protein NP_561936.1 1223137 D 195102 CDS NP_561937.1 18310003 989328 1223623..1224432 1 NC_003366.1 similar to gpu:AP001507_93 dihydropteroate synthase (dihydropteroate pyrophosphorylase) from Bacillus halodurans (280 aa); 60.7% identity in 262 aa overlap; dihydropteroate synthase 1224432 folP 989328 folP Clostridium perfringens str. 13 dihydropteroate synthase NP_561937.1 1223623 D 195102 CDS NP_561938.1 18310004 989329 1224445..1225266 1 NC_003366.1 similar to sp:SULD_STRPN BIFUNCTIONAL FOLATE SYNTHESIS PROTEIN [INCLUDES: DIHYDRONEOPTERIN ALDOLASE (EC 4.1.2.25) (DHNA) from Streptococcus pneumoniae (270 aa); 43.9% identity in 271 aa overlap; dihydroneopterin aldolase/ 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 1225266 folA/folK 989329 folA/folK Clostridium perfringens str. 13 dihydroneopterin aldolase/ 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase NP_561938.1 1224445 D 195102 CDS NP_561939.1 18310005 989330 complement(1225337..1225807) 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1225807 989330 CPE1023 Clostridium perfringens str. 13 hypothetical protein NP_561939.1 1225337 R 195102 CDS NP_561940.1 18310006 989331 1225922..1226362 1 NC_003366.1 no significant homology. 1 transmembrane region was found by PSORT; hypothetical protein 1226362 989331 CPE1024 Clostridium perfringens str. 13 hypothetical protein NP_561940.1 1225922 D 195102 CDS NP_561941.1 18310007 989332 1226692..1227786 1 NC_003366.1 partially similar to gp:AE002118_3 pyruvate kinase from Ureaplasma urealyticum (474 aa); 31.5% identity in 324 aa overlap; pyruvate kinase 1227786 pykA 989332 pykA Clostridium perfringens str. 13 pyruvate kinase NP_561941.1 1226692 D 195102 CDS NP_561942.1 18310008 989333 complement(1227783..1228340) 1 NC_003366.1 similar to pir:D69206 conserved hypothetical protein MTH798 from Methanobacterium thermoautotrophicum (strain Delta H) (186 aa); 34.7% identity in 167 aa overlap. 4 transmembrane regions were found by PSORT.; hypothetical protein 1228340 989333 CPE1026 Clostridium perfringens str. 13 hypothetical protein NP_561942.1 1227783 R 195102 CDS NP_561943.1 18310009 989334 1228514..1229965 1 NC_003366.1 similar to gpu:AP001509_234 BH0796 gene product from Bacillus halodurans (500 aa); 40.4% identity in 451 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1229965 989334 CPE1027 Clostridium perfringens str. 13 hypothetical protein NP_561943.1 1228514 D 195102 CDS NP_561944.1 18310010 989335 complement(1229962..1230303) 1 NC_003366.1 similar to pir:B75108 hypothetical protein PAB1926 from Pyrococcus abyssi (strain Orsay) (127 aa); 36.7% identity in 90 aa overlap; hypothetical protein 1230303 989335 CPE1028 Clostridium perfringens str. 13 hypothetical protein NP_561944.1 1229962 R 195102 CDS NP_561945.1 18310011 989336 complement(1230323..1230709) 1 NC_003366.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1230709 989336 CPE1029 Clostridium perfringens str. 13 camphor resistance protein CrcB NP_561945.1 1230323 R 195102 CDS NP_561946.1 18310012 989337 1231228..1232676 1 NC_003366.1 similar to gpu:AP001509_234 BH0796 gene product from Bacillus halodurans (500 aa); 47.3% identity in 425 aa overlap; hypothetical protein 1232676 989337 CPE1030 Clostridium perfringens str. 13 hypothetical protein NP_561946.1 1231228 D 195102 CDS NP_561947.1 18310013 989338 1232895..1233629 1 NC_003366.1 similar to gpu:AP001510_120 transcriptional regulator (ArsR family) from Bacillus halodurans (99 aa); 40.3% identity in 72 aa overlap; ArsR family; transcriptional regulator 1233629 989338 CPE1031 Clostridium perfringens str. 13 transcriptional regulator NP_561947.1 1232895 D 195102 CDS NP_561948.1 18310014 989339 1233841..1235157 1 NC_003366.1 similar to pir:T44439 indole-3-acetyl-L-aspartic acid hydrolase (EC 3.5.1.-) [validated] from Enterobacter agglomerans (441 aa); 40% identity in 425 aa overlap; amidohydrolase 1235157 989339 CPE1032 Clostridium perfringens str. 13 amidohydrolase NP_561948.1 1233841 D 195102 CDS NP_561949.1 18310015 989340 complement(1235303..1236103) 1 NC_003366.1 similar to sp:LICA_HAEIN LICA PROTEIN from Haemophilus influenzae (strain RM7004) (339 aa); 28.7% identity in 258 aa overlap; choline/ethanolamine kinase 1236103 989340 CPE1033 Clostridium perfringens str. 13 choline/ethanolamine kinase NP_561949.1 1235303 R 195102 CDS NP_561950.1 18310016 989341 1236168..1237253 1 NC_003366.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1237253 cobT 989341 cobT Clostridium perfringens str. 13 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase NP_561950.1 1236168 D 195102 CDS NP_561951.1 18310017 989342 1237291..1237851 1 NC_003366.1 similar to gpu:AP001512_177 cobinamide kinase/cobinamide phosphate guanylyltransferase from Bacillus halodurans (188 aa); 23.4% identity in 154 aa overlap; hypothetical protein 1237851 989342 CPE1035 Clostridium perfringens str. 13 hypothetical protein NP_561951.1 1237291 D 195102 CDS NP_561952.1 18310018 989343 1237835..1238590 1 NC_003366.1 similar to gpu:AP001512_179 cobalamin synthase from Bacillus halodurans (261 aa); 31.6% identity in 234 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; cobalamin synthase 1238590 cobS 989343 cobS Clostridium perfringens str. 13 cobalamin synthase NP_561952.1 1237835 D 195102 CDS NP_561953.1 18310019 989344 1238604..1238984 1 NC_003366.1 similar to gpu:AP001512_181 BH1594 gene product from Bacillus halodurans (140 aa); 39.2% identity in 51 aa overlap; hypothetical protein 1238984 989344 CPE1037 Clostridium perfringens str. 13 hypothetical protein NP_561953.1 1238604 D 195102 CDS NP_561954.1 18310020 989345 1238989..1239633 1 NC_003366.1 similar to gpu:AP001512_180 alpha-ribazole-5'-phosphate phosphatase from Bacillus halodurans (209 aa); 31.3% identity in 176 aa overlap. 1 transmembrane region was found by PSORT; alpha-ribazole-5'-phosphate phosphatase 1239633 cobC 989345 cobC Clostridium perfringens str. 13 alpha-ribazole-5'-phosphate phosphatase NP_561954.1 1238989 D 195102 CDS NP_561955.1 18310021 989346 1239636..1240583 1 NC_003366.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1240583 cobD 989346 cobD Clostridium perfringens str. 13 cobalamin biosynthesis protein NP_561955.1 1239636 D 195102 CDS NP_561956.1 18310022 989347 1240580..1241644 1 NC_003366.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 1241644 989347 CPE1040 Clostridium perfringens str. 13 threonine-phosphate decarboxylase NP_561956.1 1240580 D 195102 CDS NP_561957.1 18310023 989348 1242218..1243135 1 NC_003366.1 similar to pir:G70046 iron-binding protein homolog yvrC from Bacillus subtilis (314 aa); 34.2% identity in 298 aa overlap; ferric ion-binding protein; iron ABC transporter 1243135 989348 CPE1041 Clostridium perfringens str. 13 iron ABC transporter NP_561957.1 1242218 D 195102 CDS NP_561958.1 18310024 989349 1243122..1244153 1 NC_003366.1 similar to gpu:AP001512_173 ferric ion ABC transpoter (permease) from Bacillus halodurans (353 aa); 39.3% identity in 305 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; permease; iron ABC transporter 1244153 989349 CPE1042 Clostridium perfringens str. 13 iron ABC transporter NP_561958.1 1243122 D 195102 CDS NP_561959.1 18310025 989351 1244119..1244913 1 NC_003366.1 similar to N-terminal half of gpu:AP001512_174 iron(III) dicitrate transport system (permease) from Bacillus halodurans (491 aa); 37.8% identity in 241 aa overlap; permease; iron(III) dicitrate transport system 1244913 989351 CPE1043 Clostridium perfringens str. 13 iron(III) dicitrate transport system NP_561959.1 1244119 D 195102 CDS NP_561960.1 18310026 989353 1244923..1245576 1 NC_003366.1 similar to pir:H69339 conserved hypothetical protein AF0720 from Archaeoglobus fulgidus (214 aa); 34.6% identity in 214 aa overlap; hypothetical protein 1245576 989353 CPE1044 Clostridium perfringens str. 13 hypothetical protein NP_561960.1 1244923 D 195102 CDS NP_561961.1 18310027 989354 1245586..1247049 1 NC_003366.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1247049 cbiP 989354 cbiP Clostridium perfringens str. 13 cobyric acid synthase NP_561961.1 1245586 D 195102 CDS NP_561962.1 18310028 989355 1247325..1253222 1 NC_003366.1 partially similar to gpu:AB012238_1 alpha-glucosidase from Bacillus thermoamyloliquefaciens (731 aa); 27.1% identity in 591 aa overlap; hypothetical protein 1253222 989355 CPE1046 Clostridium perfringens str. 13 hypothetical protein NP_561962.1 1247325 D 195102 CDS NP_561963.1 18310029 989356 1253315..1253764 1 NC_003366.1 similar to pir:B29504 hypothetical 18K protein (mer operon) from Staphylococcus aureus plasmid pI258 (161 aa); 25% identity in 132 aa overlap; hypothetical protein 1253764 989356 CPE1047 Clostridium perfringens str. 13 hypothetical protein NP_561963.1 1253315 D 195102 CDS NP_561964.1 18310030 989357 1253987..1254430 1 NC_003366.1 no significant homology.; hypothetical protein 1254430 989357 CPE1048 Clostridium perfringens str. 13 hypothetical protein NP_561964.1 1253987 D 195102 CDS NP_561965.1 18310031 989358 1254652..1255818 1 NC_003366.1 no significant homology.; hypothetical protein 1255818 989358 CPE1049 Clostridium perfringens str. 13 hypothetical protein NP_561965.1 1254652 D 195102 CDS NP_561966.1 18310032 989359 1256109..1256909 1 NC_003366.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1256909 989359 CPE1050 Clostridium perfringens str. 13 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase NP_561966.1 1256109 D 195102 CDS NP_561967.1 18310033 989360 complement(1257260..1258444) 1 NC_003366.1 similar to pir:A81324 probable cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79) Cj1183c from Campylobacter jejuni (strain NCTC 11168) (387 aa); 46.8% identity in 391 aa overlap; cyclopropane-fatty-acyl-phospholipid synthase 1258444 cfa 989360 cfa Clostridium perfringens str. 13 cyclopropane-fatty-acyl-phospholipid synthase NP_561967.1 1257260 R 195102 CDS NP_561968.1 18310034 989361 1258777..1260132 1 NC_003366.1 similar to pir:E64935 hypothetical protein b1757 from Escherichia coli (strain K-12) (440 aa); 36.4% identity in 404 aa overlap; thiosulfate sulfurtransferase 1260132 989361 CPE1052 Clostridium perfringens str. 13 thiosulfate sulfurtransferase NP_561968.1 1258777 D 195102 CDS NP_561969.1 18310035 989362 1260136..1260561 1 NC_003366.1 no significant homology. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 1260561 989362 CPE1053 Clostridium perfringens str. 13 hypothetical protein NP_561969.1 1260136 D 195102 CDS NP_561970.1 18310036 989363 1260786..1261025 1 NC_003366.1 no significant homology.; hypothetical protein 1261025 989363 CPE1054 Clostridium perfringens str. 13 hypothetical protein NP_561970.1 1260786 D 195102 CDS NP_561971.1 18310037 989364 1261234..1262004 1 NC_003366.1 similar to pir:T48821 hypothetical protein 68B2.50 from Neurospora crassa (386 aa); 25% identity in 260 aa overlap; hypothetical protein 1262004 989364 CPE1055 Clostridium perfringens str. 13 hypothetical protein NP_561971.1 1261234 D 195102 CDS NP_561972.1 18310038 989365 1262188..1263012 1 NC_003366.1 catalyzes the formation of L-histidinol from L-histidinol phosphate; histidinol-phosphatase 1263012 hisB 989365 hisB Clostridium perfringens str. 13 histidinol-phosphatase NP_561972.1 1262188 D 195102 CDS NP_561973.1 18310039 989366 complement(1263140..1264561) 1 NC_003366.1 partially similar to prf:2217303A periplasmic protein from Escherichia coli (262 aa); 26.7% identity in 101 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1264561 989366 CPE1057 Clostridium perfringens str. 13 hypothetical protein NP_561973.1 1263140 R 195102 CDS NP_561974.1 18310040 989367 complement(1264921..1266582) 1 NC_003366.1 catalyzes the formation of NAD(+) from deamido-NAD(+) using either ammonia or glutamine as the nitrogen source; NAD synthetase 1266582 nadE 989367 nadE Clostridium perfringens str. 13 NAD synthetase NP_561974.1 1264921 R 195102 CDS NP_561975.1 18310041 989368 1267144..1267557 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1267557 989368 CPE1059 Clostridium perfringens str. 13 hypothetical protein NP_561975.1 1267144 D 195102 CDS NP_561976.1 18310042 989369 1267577..1268527 1 NC_003366.1 similar to sp:YBBK_ECOLI HYPOTHETICAL 33.7 KDA PROTEIN IN USHA-TESA INTERGENIC REGION from Escherichia coli (305 aa); 42.8% identity in 297 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1268527 989369 CPE1060 Clostridium perfringens str. 13 hypothetical protein NP_561976.1 1267577 D 195102 CDS NP_561977.1 18310043 989370 1268707..1269759 1 NC_003366.1 similar to sp:ALR_BORBU ALANINE RACEMASE (EC 5.1.1.1) from Borrelia burgdorferi (372 aa); 33.4% identity in 314 aa overlap; alanine racemase 1269759 alr 989370 alr Clostridium perfringens str. 13 alanine racemase NP_561977.1 1268707 D 195102 CDS NP_561978.1 18310044 989371 1269992..1271026 1 NC_003366.1 similar to pir:G72398 hypothetical protein TM0246 from Thermotoga maritima (strain MSB8) (224 aa); 32.4% identity in 182 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1271026 989371 CPE1062 Clostridium perfringens str. 13 hypothetical protein NP_561978.1 1269992 D 195102 CDS NP_561979.1 18310045 989372 1271044..1271712 1 NC_003366.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 1271712 nqrD 989372 nqrD Clostridium perfringens str. 13 electron transport complex protein RsxE NP_561979.1 1271044 D 195102 CDS NP_561980.1 18310046 989373 1271741..1272316 1 NC_003366.1 similar to pir:A72399 Na-translocating NADH-quinone reductase, Nqr5 subunit from Thermotoga maritima (strain MSB8) (213 aa); 54.6% identity in 194 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; Na-translocating NADH-quinone reductase 1272316 nqrE 989373 nqrE Clostridium perfringens str. 13 Na-translocating NADH-quinone reductase NP_561980.1 1271741 D 195102 CDS NP_561981.1 18310047 989374 1272333..1273139 1 NC_003366.1 involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate; ferredoxin 1273139 989374 CPE1065 Clostridium perfringens str. 13 ferredoxin NP_561981.1 1272333 D 195102 CDS NP_561982.1 18310048 989375 1273220..1273720 1 NC_003366.1 similar to pir:I55434 deoxycytidylate deaminase from Homo sapiens (178 aa); 60.1% identity in 158 aa overlap; cytidine/deoxycytidylate deaminase 1273720 989375 CPE1066 Clostridium perfringens str. 13 cytidine/deoxycytidylate deaminase NP_561982.1 1273220 D 195102 CDS NP_561983.1 18310049 989376 1273892..1274356 1 NC_003366.1 similar to gpu:AP001514_67 transcriptional regulator (MarR family) from Bacillus halodurans (149 aa); 30.7% identity in 101 aa overlap; MarR family; MarR family transcriptional regulator 1274356 989376 CPE1067 Clostridium perfringens str. 13 MarR family transcriptional regulator NP_561983.1 1273892 D 195102 CDS NP_561984.1 18310050 989377 1274358..1275332 1 NC_003366.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1275332 fabH 989377 fabH Clostridium perfringens str. 13 3-oxoacyl-ACP synthase NP_561984.1 1274358 D 195102 CDS NP_561985.1 18310051 989378 1275429..1276373 1 NC_003366.1 similar to sp:FABD_BACSU MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE (EC 2.3.1.39) from Bacillus subtilis (317 aa); 43.5% identity in 310 aa overlap; malonyl CoA-ACP transacylase 1276373 fabD 989378 fabD Clostridium perfringens str. 13 malonyl CoA-ACP transacylase NP_561985.1 1275429 D 195102 CDS NP_561986.1 18310052 989379 1276377..1277117 1 NC_003366.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1277117 fabG 989379 fabG Clostridium perfringens str. 13 3-ketoacyl-ACP reductase NP_561986.1 1276377 D 195102 CDS NP_561987.1 18310053 989380 1277132..1278373 1 NC_003366.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 1278373 fabF 989380 fabF Clostridium perfringens str. 13 3-oxoacyl-ACP synthase NP_561987.1 1277132 D 195102 CDS NP_561988.1 18310054 989381 1278385..1278876 1 NC_003366.1 similar to pir:H69580 acetyl-CoA carboxylase (biotin carboxyl carrier subunit) accB from Bacillus subtilis (159 aa); 41.4% identity in 162 aa overlap; biotin carboxyl carrier subunit; acetyl-CoA carboxylase biotin carboxyl carrier protein 1278876 accB 989381 accB Clostridium perfringens str. 13 acetyl-CoA carboxylase biotin carboxyl carrier protein NP_561988.1 1278385 D 195102 CDS NP_561989.1 18310055 989382 1278879..1279298 1 NC_003366.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1279298 fabZ 989382 fabZ Clostridium perfringens str. 13 (3R)-hydroxymyristoyl-ACP dehydratase NP_561989.1 1278879 D 195102 CDS NP_561990.1 18310056 989383 1279310..1280662 1 NC_003366.1 Catalyzes the formation of malnoyl-CoA, which in turn controls the rate of fatty acid metabolism; biotin carboxylase 1280662 accC 989383 accC Clostridium perfringens str. 13 biotin carboxylase NP_561990.1 1279310 D 195102 CDS NP_561991.1 18310057 989384 1280827..1281534 1 NC_003366.1 similar to gpu:AP001517_288 acetyl-CoA carboxylase transferase beta subunit from Bacillus halodurans (282 aa); 49.8% identity in 289 aa overlap; transferase beta subunit; acetyl-CoA carboxylase carboxyl transferase subunit beta 1281534 accD 989384 accD Clostridium perfringens str. 13 acetyl-CoA carboxylase carboxyl transferase subunit beta NP_561991.1 1280827 D 195102 CDS NP_561992.1 18310058 989385 1281527..1282342 1 NC_003366.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1282342 accA 989385 accA Clostridium perfringens str. 13 acetyl-CoA carboxylase carboxyltransferase subunit alpha NP_561992.1 1281527 D 195102 CDS NP_561993.1 18310059 989386 complement(1282443..1282832) 1 NC_003366.1 similar to pir:C69525 conserved hypothetical protein AF2203 from Archaeoglobus fulgidus (119 aa); 35.3% identity in 85 aa overlap; PadR family transcriptional regulator 1282832 989386 CPE1077 Clostridium perfringens str. 13 PadR family transcriptional regulator NP_561993.1 1282443 R 195102 CDS NP_561994.1 18310060 989387 1282959..1283180 1 NC_003366.1 no significant homology.; hypothetical protein 1283180 989387 CPE1078 Clostridium perfringens str. 13 hypothetical protein NP_561994.1 1282959 D 195102 CDS NP_561995.1 18310061 989388 complement(1283238..1283948) 1 NC_003366.1 similar to pir:E75018 endonuclease iv related protein PAB1103 from Pyrococcus abyssi (strain Orsay) (281 aa); 46.2% identity in 236 aa overlap; hypothetical protein 1283948 989388 CPE1079 Clostridium perfringens str. 13 hypothetical protein NP_561995.1 1283238 R 195102 CDS NP_561996.1 18310062 989389 1284275..1284985 1 NC_003366.1 similar to gpu:AP001512_163 pseudouridylate synthase from Bacillus halodurans (242 aa); 42.7% identity in 234 aa overlap; pseudouridylate synthase 1284985 989389 CPE1080 Clostridium perfringens str. 13 pseudouridylate synthase NP_561996.1 1284275 D 195102 CDS NP_561997.1 18310063 989390 1284976..1285542 1 NC_003366.1 similar to pir:G81942 hypothetical protein NMA0960 from Neisseria meningitidis (group A strain Z2491) (188 aa); 41.1% identity in 168 aa overlap. ATC start; hypothetical protein 1285542 989390 CPE1081 Clostridium perfringens str. 13 hypothetical protein NP_561997.1 1284976 D 195102 CDS NP_561998.1 18310064 989391 1285574..1286449 1 NC_003366.1 similar to gpu:AP001517_62 BH2940 gene product from Bacillus halodurans (284 aa); 41.8% identity in 282 aa overlap. 1 transmembrane region was found by PSORT; RpiR family; RpiR family transcriptional regulator 1286449 989391 CPE1082 Clostridium perfringens str. 13 RpiR family transcriptional regulator NP_561998.1 1285574 D 195102 CDS NP_561999.1 18310065 989392 1286708..1287886 1 NC_003366.1 similar to gpu:AP001518_110 BH3279 gene product from Bacillus halodurans (422 aa); 38.5% identity in 379 aa overlap; hypothetical protein 1287886 989392 CPE1083 Clostridium perfringens str. 13 hypothetical protein NP_561999.1 1286708 D 195102 CDS NP_562000.1 18310066 989393 1288009..1288662 1 NC_003366.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1288662 cmk 989393 cmk Clostridium perfringens str. 13 cytidylate kinase NP_562000.1 1288009 D 195102 CDS NP_562001.1 18310067 989394 1288664..1289512 1 NC_003366.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1289512 lytB 989394 lytB Clostridium perfringens str. 13 4-hydroxy-3-methylbut-2-enyl diphosphate reductase NP_562001.1 1288664 D 195102 CDS NP_562002.1 18310068 989395 1289622..1290416 1 NC_003366.1 partially similar to pir:B70351 ribosomal-protein-alanine acetyltransferase from Aquifex aeolicus (154 aa); 41.2% identity in 97 aa overlap; hypothetical protein 1290416 989395 CPE1086 Clostridium perfringens str. 13 hypothetical protein NP_562002.1 1289622 D 195102 CDS NP_562003.1 18310069 989396 complement(1290516..1290665) 1 NC_003366.1 no significant homology.; hypothetical protein 1290665 989396 CPE1087 Clostridium perfringens str. 13 hypothetical protein NP_562003.1 1290516 R 195102 CDS NP_562004.1 18310070 989397 1290802..1291374 1 NC_003366.1 partially similar to pir:S37170 repB protein from Lactococcus lacti (381 aa); 25.1% identity in 175 aa overlap; hypothetical protein 1291374 989397 CPE1088 Clostridium perfringens str. 13 hypothetical protein NP_562004.1 1290802 D 195102 CDS NP_562005.1 18310071 989398 1291513..1291977 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1291977 989398 CPE1089 Clostridium perfringens str. 13 hypothetical protein NP_562005.1 1291513 D 195102 CDS NP_562006.1 18310072 989399 complement(1292023..1292499) 1 NC_003366.1 no significant homology.; hypothetical protein 1292499 989399 CPE1090 Clostridium perfringens str. 13 hypothetical protein NP_562006.1 1292023 R 195102 CDS NP_562007.1 18310073 989400 complement(1292677..1293069) 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1293069 989400 CPE1091 Clostridium perfringens str. 13 hypothetical protein NP_562007.1 1292677 R 195102 CDS NP_562008.1 18310074 989401 1293432..1294415 1 NC_003366.1 similar to sp:PAC_BACSH PENICILLIN ACYLASE (EC 3.5.1.11) (PENICILLIN V AMIDASE) from Bacillus sphaericus (338 aa); 33.7% identity in 323 aa overlap; choloylglycine hydrolase 1294415 pac 989401 pac Clostridium perfringens str. 13 choloylglycine hydrolase NP_562008.1 1293432 D 195102 CDS NP_562009.1 18310075 989402 1294599..1295942 1 NC_003366.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1295942 989402 CPE1093 Clostridium perfringens str. 13 (dimethylallyl)adenosine tRNA methylthiotransferase NP_562009.1 1294599 D 195102 CDS NP_562010.1 18310076 989403 1296398..1298011 1 NC_003366.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 1298011 989403 CPE1094 Clostridium perfringens str. 13 phosphoenolpyruvate carboxylase NP_562010.1 1296398 D 195102 CDS NP_562011.1 18310077 989404 1298199..1299215 1 NC_003366.1 similar to sp:RIPX_BACSU PROBABLE INTEGRASE/RECOMBINASE RIPX from Bacillus subtilis (296 aa); 28% identity in 321 aa overlap; integrase/recombinase 1299215 989404 CPE1095 Clostridium perfringens str. 13 integrase/recombinase NP_562011.1 1298199 D 195102 CDS NP_562012.1 18310078 989405 1299873..1300172 1 NC_003366.1 no significant homology.; hypothetical protein 1300172 989405 CPE1096 Clostridium perfringens str. 13 hypothetical protein NP_562012.1 1299873 D 195102 CDS NP_562013.1 18310079 989406 complement(1300313..1300525) 1 NC_003366.1 similar to pir:G82969 probable transcription regulator PA5403 from Pseudomonas aeruginosa (strain PAO1) (68 aa); 41.2% identity in 68 aa overlap; transcriptional regulator 1300525 989406 CPE1097 Clostridium perfringens str. 13 transcriptional regulator NP_562013.1 1300313 R 195102 CDS NP_562014.1 18310080 989407 1300712..1301176 1 NC_003366.1 no significant homology.; hypothetical protein 1301176 989407 CPE1098 Clostridium perfringens str. 13 hypothetical protein NP_562014.1 1300712 D 195102 CDS NP_562015.1 18310081 989408 1301201..1301503 1 NC_003366.1 no significant homology.; hypothetical protein 1301503 989408 CPE1099 Clostridium perfringens str. 13 hypothetical protein NP_562015.1 1301201 D 195102 CDS NP_562016.1 18310082 989409 1301594..1302286 1 NC_003366.1 similar to N-terminal of gp:MHO243903_1 P75 protein from Mycoplasma hominis (654 aa); 26.2% identity in 168 aa overlap; hypothetical protein 1302286 989409 CPE1100 Clostridium perfringens str. 13 hypothetical protein NP_562016.1 1301594 D 195102 CDS NP_562017.1 18310083 989410 1302323..1302556 1 NC_003366.1 no significant homology.; hypothetical protein 1302556 989410 CPE1101 Clostridium perfringens str. 13 hypothetical protein NP_562017.1 1302323 D 195102 CDS NP_562018.1 18310084 989411 1302601..1303431 1 NC_003366.1 no significant homology; hypothetical protein 1303431 989411 CPE1102 Clostridium perfringens str. 13 hypothetical protein NP_562018.1 1302601 D 195102 CDS NP_562019.1 18310085 989412 1303501..1306695 1 NC_003366.1 N-terminal portion is similar to pir:T12827 hypothetical protein yonO from Bacillus subtilis phage SPBc2 (839 aa); 21.3% identity in 536 aa overlap; hypothetical protein 1306695 989412 CPE1103 Clostridium perfringens str. 13 hypothetical protein NP_562019.1 1303501 D 195102 CDS NP_562020.1 18310086 989413 1306795..1307226 1 NC_003366.1 no significant homology.; hypothetical protein 1307226 989413 CPE1104 Clostridium perfringens str. 13 hypothetical protein NP_562020.1 1306795 D 195102 CDS NP_562021.1 18310087 989414 1307241..1307561 1 NC_003366.1 no significant homology.; hypothetical protein 1307561 989414 CPE1105 Clostridium perfringens str. 13 hypothetical protein NP_562021.1 1307241 D 195102 CDS NP_562022.1 18310088 989415 1307575..1307745 1 NC_003366.1 no significant homology.; hypothetical protein 1307745 989415 CPE1106 Clostridium perfringens str. 13 hypothetical protein NP_562022.1 1307575 D 195102 CDS NP_562023.1 18310089 989416 1307775..1308695 1 NC_003366.1 no significant homology.; hypothetical protein 1308695 989416 CPE1107 Clostridium perfringens str. 13 hypothetical protein NP_562023.1 1307775 D 195102 CDS NP_562024.1 18310090 989417 1309065..1309247 1 NC_003366.1 no significant homology; hypothetical protein 1309247 989417 CPE1108 Clostridium perfringens str. 13 hypothetical protein NP_562024.1 1309065 D 195102 CDS NP_562025.1 18310091 989418 1309449..1309904 1 NC_003366.1 no significant homology.; hypothetical protein 1309904 989418 CPE1109 Clostridium perfringens str. 13 hypothetical protein NP_562025.1 1309449 D 195102 CDS NP_562026.1 18310092 989419 1310119..1311216 1 NC_003366.1 similar to pir:T28355 ORF MSV194 ALI motif gene family protein from Melanoplus sanguinipes entomopoxvirus (409 aa); 28.2% identity in 195 aa overlap; hypothetical protein 1311216 989419 CPE1110 Clostridium perfringens str. 13 hypothetical protein NP_562026.1 1310119 D 195102 CDS NP_562027.1 18310093 989420 1311231..1311389 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1311389 989420 CPE1111 Clostridium perfringens str. 13 hypothetical protein NP_562027.1 1311231 D 195102 CDS NP_562028.1 18310094 989421 1311383..1311649 1 NC_003366.1 no significant homology.; hypothetical protein 1311649 989421 CPE1112 Clostridium perfringens str. 13 hypothetical protein NP_562028.1 1311383 D 195102 CDS NP_562029.1 18310095 989422 1311688..1312071 1 NC_003366.1 no significant homology.; hypothetical protein 1312071 989422 CPE1113 Clostridium perfringens str. 13 hypothetical protein NP_562029.1 1311688 D 195102 CDS NP_562030.1 18310096 989423 1312073..1312252 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1312252 989423 CPE1114 Clostridium perfringens str. 13 hypothetical protein NP_562030.1 1312073 D 195102 CDS NP_562031.1 18310097 989424 1312258..1312500 1 NC_003366.1 no significant homology.; hypothetical protein 1312500 989424 CPE1115 Clostridium perfringens str. 13 hypothetical protein NP_562031.1 1312258 D 195102 CDS NP_562032.1 18310098 989425 1312560..1312970 1 NC_003366.1 similar to prf:2419278BV ORF from bacteriophage phi-PVL (113 aa); 33.7% identity in 95 aa overlap; hypothetical protein 1312970 989425 CPE1116 Clostridium perfringens str. 13 hypothetical protein NP_562032.1 1312560 D 195102 CDS NP_562033.1 18310099 989426 1312983..1313567 1 NC_003366.1 similar to pir:T00134 hypothetical protein 4 from Staphylococcus aureus phage phi PVL (155 aa); 28% identity in 150 aa overlap; hypothetical protein 1313567 989426 CPE1117 Clostridium perfringens str. 13 hypothetical protein NP_562033.1 1312983 D 195102 CDS NP_562034.1 18310100 989427 1313567..1315243 1 NC_003366.1 similar to gp:AF198256_11 phage D3 terminase-like protein from Haemophilus influenzae (555 aa); 25.9% identity in 528 aa overlap. 2 transmembrane regions were found by PSORT.; phage-related terminase 1315243 989427 CPE1118 Clostridium perfringens str. 13 phage-related terminase NP_562034.1 1313567 D 195102 CDS NP_562035.1 18310101 989428 1315252..1315425 1 NC_003366.1 no significant homology. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1315425 989428 CPE1119 Clostridium perfringens str. 13 hypothetical protein NP_562035.1 1315252 D 195102 CDS NP_562036.1 18310102 989429 1315442..1316665 1 NC_003366.1 similar to pir:T13514 hypothetical protein 25 from Bacillus phage phi-105 (416 aa); 29.3% identity in 372 aa overlap; hypothetical protein 1316665 989429 CPE1120 Clostridium perfringens str. 13 hypothetical protein NP_562036.1 1315442 D 195102 CDS NP_562037.1 18310103 989430 1316640..1317242 1 NC_003366.1 similar to gp:AF198256_17 phage phi-C31 gp35-like protein from Haemophilus influenzae (188 aa); 35.2% identity in 159 aa overlap; phage phi-C31 gp35-like protein 1317242 989430 CPE1121 Clostridium perfringens str. 13 phage phi-C31 gp35-like protein NP_562037.1 1316640 D 195102 CDS NP_562038.1 18310104 989431 1317279..1318415 1 NC_003366.1 similar to pir:T13516 hypothetical protein 27 from bacteriophage phi-105 (397 aa); 32.6% identity in 371 aa overlap; phage-related head protein 1318415 989431 CPE1122 Clostridium perfringens str. 13 phage-related head protein NP_562038.1 1317279 D 195102 CDS NP_562039.1 18310105 989432 1318478..1318771 1 NC_003366.1 similar to pir:T13519 hypothetical protein 30 from Bacillus phage phi-105 (115 aa); 26.5% identity in 68 aa overlap; hypothetical protein 1318771 989432 CPE1123 Clostridium perfringens str. 13 hypothetical protein NP_562039.1 1318478 D 195102 CDS NP_562040.1 18310106 989433 1318764..1319081 1 NC_003366.1 no significant homology.; hypothetical protein 1319081 989433 CPE1124 Clostridium perfringens str. 13 hypothetical protein NP_562040.1 1318764 D 195102 CDS NP_562041.1 18310107 989434 1319082..1319525 1 NC_003366.1 similar to pir:T13521 hypothetical protein 32 from Bacillus phage phi-105 (127 aa); 27.7% identity in 119 aa overlap; hypothetical protein 1319525 989434 CPE1125 Clostridium perfringens str. 13 hypothetical protein NP_562041.1 1319082 D 195102 CDS NP_562042.1 18310108 989435 1319535..1319885 1 NC_003366.1 similar to pir:T13522 hypothetical protein 33 from Bacillus phage phi-105 (162 aa); 53.6% identity in 28 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1319885 989435 CPE1126 Clostridium perfringens str. 13 hypothetical protein NP_562042.1 1319535 D 195102 CDS NP_562043.1 18310109 989436 1319901..1320500 1 NC_003366.1 similar to pir:T13523 hypothetical protein 34 from Bacillus phage phi-105 (200 aa); 28.4% identity in 141 aa overlap; hypothetical protein 1320500 989436 CPE1127 Clostridium perfringens str. 13 hypothetical protein NP_562043.1 1319901 D 195102 CDS NP_562044.1 18310110 989437 1320548..1320853 1 NC_003366.1 no significant homology.; hypothetical protein 1320853 989437 CPE1128 Clostridium perfringens str. 13 hypothetical protein NP_562044.1 1320548 D 195102 CDS NP_562045.1 18310111 989438 1321015..1321350 1 NC_003366.1 no significant homology.; hypothetical protein 1321350 989438 CPE1129 Clostridium perfringens str. 13 hypothetical protein NP_562045.1 1321015 D 195102 CDS NP_562046.1 18310112 989439 1321368..1324169 1 NC_003366.1 similar to pir:T00148 hypothetical protein 15 from Staphylococcus aureus phage phi PVL (694 aa); 17.5% identity in 531 aa overlap. 2 transmembrane regions were found by PSORT.; hypothetical protein 1324169 989439 CPE1130 Clostridium perfringens str. 13 hypothetical protein NP_562046.1 1321368 D 195102 CDS NP_562047.1 18310113 989440 1324150..1324845 1 NC_003366.1 similar to gp:LBA131519_53 hypothetical protein from Lactobacillus bacteriophage phi adh (247 aa); 26.2% identity in 214 aa overlap; hypothetical protein 1324845 989440 CPE1131 Clostridium perfringens str. 13 hypothetical protein NP_562047.1 1324150 D 195102 CDS NP_562048.1 18310114 989441 1324849..1327800 1 NC_003366.1 partially similar to pir:F70700 hypothetical protein Rv0024 from Mycobacterium tuberculosis (strain H37RV) (281 aa); 40% identity in 120 aa overlap; hypothetical protein 1327800 989441 CPE1132 Clostridium perfringens str. 13 hypothetical protein NP_562048.1 1324849 D 195102 CDS NP_562049.1 18310115 989442 1327849..1329723 1 NC_003366.1 partially similar to gpu:AF278687_1 choline binding protein E from Streptococcus pneumoniae (627 aa); 26.4% identity in 447 aa overlap; choline binding protein 1329723 989442 CPE1133 Clostridium perfringens str. 13 choline binding protein NP_562049.1 1327849 D 195102 CDS NP_562050.1 18310116 989443 1329739..1331685 1 NC_003366.1 no significant homology.; hypothetical protein 1331685 989443 CPE1134 Clostridium perfringens str. 13 hypothetical protein NP_562050.1 1329739 D 195102 CDS NP_562051.1 18310117 989444 1331702..1331944 1 NC_003366.1 no significant homology.; hypothetical protein 1331944 989444 CPE1135 Clostridium perfringens str. 13 hypothetical protein NP_562051.1 1331702 D 195102 CDS NP_562052.1 18310118 989445 1332026..1332205 1 NC_003366.1 similar to pir:JH0445 hypothetical 10.2K protein (lyc 5' region) from Clostridium acetobutylicum (86 aa); 25% identity in 52 aa overlap; hypothetical protein 1332205 989445 CPE1136 Clostridium perfringens str. 13 hypothetical protein NP_562052.1 1332026 D 195102 CDS NP_562053.1 18310119 989446 1332271..1332474 1 NC_003366.1 no significant homology. 2 transmembrane regions were found by PSORT.; hypothetical protein 1332474 989446 CPE1137 Clostridium perfringens str. 13 hypothetical protein NP_562053.1 1332271 D 195102 CDS NP_562054.1 18310120 989447 1332512..1333426 1 NC_003366.1 partially similar to sp:BCN5_CLOPE BACTERIOCIN BCN5 from Clostridium perfringens plasmid pIP404 (890 aa); 51.1% identity in 141 aa overlap; hypothetical protein 1333426 989447 CPE1138 Clostridium perfringens str. 13 hypothetical protein NP_562054.1 1332512 D 195102 CDS NP_562055.1 18310121 989448 complement(1334196..1334990) 1 NC_003366.1 no significant homology.; hypothetical protein 1334990 989448 CPE1139 Clostridium perfringens str. 13 hypothetical protein NP_562055.1 1334196 R 195102 CDS NP_562056.1 18310122 989449 1335177..1335464 1 NC_003366.1 no significant homology.; hypothetical protein 1335464 989449 CPE1140 Clostridium perfringens str. 13 hypothetical protein NP_562056.1 1335177 D 195102 CDS NP_562057.1 18310123 989450 1335992..1336501 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1336501 989450 CPE1141 Clostridium perfringens str. 13 hypothetical protein NP_562057.1 1335992 D 195102 CDS NP_562058.1 18310124 989451 1336950..1337537 1 NC_003366.1 no significant homology.; hypothetical protein 1337537 989451 CPE1142 Clostridium perfringens str. 13 hypothetical protein NP_562058.1 1336950 D 195102 CDS NP_562059.1 18310125 989452 1337651..1337983 1 NC_003366.1 no significant homology.; hypothetical protein 1337983 989452 CPE1143 Clostridium perfringens str. 13 hypothetical protein NP_562059.1 1337651 D 195102 CDS NP_562060.1 18310126 989453 complement(1338112..1339077) 1 NC_003366.1 similar to prf:2515339A regulatory protein from Leuconostoc mesenteroides (312 aa); 33.4% identity in 302 aa overlap. 1 transmembrane region was found by PSORT; SorC family; transcriptional regulator 1339077 989453 CPE1144 Clostridium perfringens str. 13 transcriptional regulator NP_562060.1 1338112 R 195102 CDS NP_562061.1 18310127 989454 complement(1339126..1339986) 1 NC_003366.1 similar to gpu:AE004165_6 citG protein from Vibrio cholerae (313 aa); 34.2% identity in 260 aa overlap. 1 transmembrane region was found by PSORT; CitG protein 1339986 citG 989454 citG Clostridium perfringens str. 13 CitG protein NP_562061.1 1339126 R 195102 CDS NP_562062.1 18310128 989455 1340264..1341301 1 NC_003366.1 similar to gpu:AE004165_1 citrate (pro-3S)-lyase ligase from Vibrio cholerae (356 aa); 40.8% identity in 316 aa overlap; citrate (pro-3S)-lyase ligase 1341301 citC 989455 citC Clostridium perfringens str. 13 citrate (pro-3S)-lyase ligase NP_562062.1 1340264 D 195102 CDS NP_562063.1 18310129 989456 1341325..1341630 1 NC_003366.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 1341630 cilG 989456 cilG Clostridium perfringens str. 13 citrate lyase subunit gamma NP_562063.1 1341325 D 195102 CDS NP_562064.1 18310130 989457 1341618..1342508 1 NC_003366.1 similar to sp:CILB_LEUMC CITRATE LYASE BETA CHAIN (EC 4.1.3.6) (CITRASE) (CITRYL-COA LYASE SUBUNIT) (EC 4.1.3.34) from Leuconostoc mesenteroides (302 aa); 57.7% identity in 286 aa overlap; citrate lyase subunit beta 1342508 cilB 989457 cilB Clostridium perfringens str. 13 citrate lyase subunit beta NP_562064.1 1341618 D 195102 CDS NP_562065.1 18310131 989458 1342512..1344071 1 NC_003366.1 similar to sp:CILA_LEUMC CITRATE LYASE ALPHA CHAIN (EC 4.1.3.6) (CITRASE) (CITRATE COA- TRANSFERASE SUBUNIT) (EC 2.8.3.10) from Leuconostoc mesenteroides (512 aa); 58.7% identity in 508 aa overlap; citrate lyase subunit alpha 1344071 cilA 989458 cilA Clostridium perfringens str. 13 citrate lyase subunit alpha NP_562065.1 1342512 D 195102 CDS NP_562066.1 18310132 989459 1344090..1344602 1 NC_003366.1 partially similar to sp:CITG_LEUMC CITG PROTEIN from Leuconostoc mesenteroides (467 aa); 33.3% identity in 162 aa overlap; triphosphoribosyl-dephospho-CoA synthase 1344602 989459 CPE1150 Clostridium perfringens str. 13 triphosphoribosyl-dephospho-CoA synthase NP_562066.1 1344090 D 195102 CDS NP_562067.1 18310133 989460 1344643..1345788 1 NC_003366.1 similar to pir:T46727 probable malic enzyme from Weissella paramesenteroides plasmid (378 aa); 49.1% identity in 373 aa overlap. 1 transmembrane region was found by PSORT; malic enzyme; malate oxidoreductase 1345788 989460 CPE1151 Clostridium perfringens str. 13 malate oxidoreductase NP_562067.1 1344643 D 195102 CDS NP_562068.1 18310134 989461 1345809..1347149 1 NC_003366.1 similar to gpu:AE004164_11 citrate/sodium symporter from Vibrio cholerae (448 aa); 39.8% identity in 422 aa overlap. 11 transmembrane regions were found by PSORT.; citrate/sodium symporter 1347149 citN 989461 citN Clostridium perfringens str. 13 citrate/sodium symporter NP_562068.1 1345809 D 195102 CDS NP_562069.1 18310135 989462 1347518..1349752 1 NC_003366.1 similar to sp:PFL_CLOPA FORMATE ACETYLTRANSFERASE (EC 2.3.1.54) (PYRUVATE FORMATE-LYASE) from Clostridium pasteurianum (740 aa); 73.7% identity in 744 aa overlap. 1 transmembrane region was found by PSORT; formate acetyltransferase 1349752 pflA 989462 pflA Clostridium perfringens str. 13 formate acetyltransferase NP_562069.1 1347518 D 195102 CDS YP_001293879.1 149134307 989463 1350038..1350745 1 NC_003366.1 pyruvate formate-lyase activating enzyme 1350745 pflA 989463 pflA Clostridium perfringens str. 13 pyruvate formate-lyase activating enzyme YP_001293879.1 1350038 D 195102 CDS NP_562071.1 18310137 989464 1351007..1353736 1 NC_003366.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1353736 mutS 989464 mutS Clostridium perfringens str. 13 DNA mismatch repair protein MutS NP_562071.1 1351007 D 195102 CDS NP_562072.1 18310138 989465 1353763..1355787 1 NC_003366.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1355787 mutL 989465 mutL Clostridium perfringens str. 13 DNA mismatch repair protein NP_562072.1 1353763 D 195102 CDS NP_562073.1 18310139 989466 1355805..1356737 1 NC_003366.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1356737 miaA 989466 miaA Clostridium perfringens str. 13 tRNA delta(2)-isopentenylpyrophosphate transferase NP_562073.1 1355805 D 195102 CDS NP_562074.1 18310140 989467 1356781..1357023 1 NC_003366.1 similar to gpu:AP001515_99 host factor-1 protein from Bacillus halodurans (78 aa); 66.2% identity in 68 aa overlap; RNA chaperone Hfq 1357023 989467 CPE1158 Clostridium perfringens str. 13 RNA chaperone Hfq NP_562074.1 1356781 D 195102 CDS NP_562075.1 18310141 989468 1357128..1358408 1 NC_003366.1 similar to pir:C69888 conserved hypothetical protein ynbB from Bacillus subtilis (421 aa); 53.5% identity in 398 aa overlap; aluminum resistance protein 1358408 989468 CPE1159 Clostridium perfringens str. 13 aluminum resistance protein NP_562075.1 1357128 D 195102 CDS NP_562076.1 18310142 989469 1358667..1359572 1 NC_003366.1 no significant homology.; hypothetical protein 1359572 989469 CPE1160 Clostridium perfringens str. 13 hypothetical protein NP_562076.1 1358667 D 195102 CDS NP_562077.1 18310143 989470 complement(1359730..1360341) 1 NC_003366.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 1360341 lexA 989470 lexA Clostridium perfringens str. 13 LexA repressor NP_562077.1 1359730 R 195102 CDS NP_562078.1 18310144 989471 1360549..1360941 1 NC_003366.1 no significant homology.; hypothetical protein 1360941 989471 CPE1162 Clostridium perfringens str. 13 hypothetical protein NP_562078.1 1360549 D 195102 CDS NP_562079.1 18310145 989472 complement(1361032..1362384) 1 NC_003366.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 1362384 xerC 989472 xerC Clostridium perfringens str. 13 site-specific tyrosine recombinase XerC NP_562079.1 1361032 R 195102 CDS NP_562080.1 18310146 989473 complement(1362882..1363100) 1 NC_003366.1 similar to pir:D70069 hypothetical protein ywsA from Bacillus subtilis (98 aa); 31.9% identity in 69 aa overlap; hypothetical protein 1363100 989473 CPE1164 Clostridium perfringens str. 13 hypothetical protein NP_562080.1 1362882 R 195102 CDS NP_562081.1 18310147 989474 1363219..1364427 1 NC_003366.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 1364427 thd 989474 thd Clostridium perfringens str. 13 threonine dehydratase NP_562081.1 1363219 D 195102 CDS NP_562082.1 18310148 989475 complement(1364467..1365936) 1 NC_003366.1 similar to sp:LYSP_ECOLI LYSINE-SPECIFIC PERMEASE. from Escherichia coli (488 aa); 54.1% identity in 440 aa overlap. 11 transmembrane regions were found by PSORT.; lysine specific permease 1365936 989475 CPE1166 Clostridium perfringens str. 13 lysine specific permease NP_562082.1 1364467 R 195102 CDS NP_562083.1 18310149 989476 1366440..1367660 1 NC_003366.1 similar to pir:G71309 probable glutamate/ aspartate transporter from Treponema pallidum (396 aa); 30.8% identity in 347 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; glutamate/ aspartate transporter 1367660 989476 CPE1167 Clostridium perfringens str. 13 glutamate/ aspartate transporter NP_562083.1 1366440 D 195102 CDS NP_562084.1 18310150 989477 complement(1367695..1368027) 1 NC_003366.1 no significant homology.; hypothetical protein 1368027 989477 CPE1168 Clostridium perfringens str. 13 hypothetical protein NP_562084.1 1367695 R 195102 CDS NP_562085.1 18310151 989478 1368302..1368946 1 NC_003366.1 similar to sp:YYAS_BACSU HYPOTHETICAL 22.0 KDA PROTEIN IN COTF-TETB INTERGENIC REGION from Bacillus subtilis (201 aa); 24.5% identity in 204 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 1368946 989478 CPE1169 Clostridium perfringens str. 13 hypothetical protein NP_562085.1 1368302 D 195102 CDS NP_562086.1 18310152 989479 complement(1368979..1369197) 1 NC_003366.1 no significant homology.; hypothetical protein 1369197 989479 CPE1170 Clostridium perfringens str. 13 hypothetical protein NP_562086.1 1368979 R 195102 CDS NP_562087.1 18310153 989480 complement(1369260..1369643) 1 NC_003366.1 no significant homology.; hypothetical protein 1369643 989480 CPE1171 Clostridium perfringens str. 13 hypothetical protein NP_562087.1 1369260 R 195102 CDS NP_562088.1 18310154 989481 complement(1369976..1370710) 1 NC_003366.1 partially similar to sp:IMD_STRCN INHIBITION OF MORPHOLOGICAL DIFFERENTIATION PROTEIN from Streptomyces cyaneus (277 aa); 25% identity in 208 aa overlap; haloacid dehalogenase 1370710 989481 CPE1172 Clostridium perfringens str. 13 haloacid dehalogenase NP_562088.1 1369976 R 195102 CDS NP_562089.1 18310155 989482 1370990..1371418 1 NC_003366.1 partially similar to pir:A71195 hypothetical protein PH1832 from Pyrococcus horikoshii (202 aa); 32.4% identity in 111 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1371418 989482 CPE1173 Clostridium perfringens str. 13 hypothetical protein NP_562089.1 1370990 D 195102 CDS NP_562090.1 18310156 989483 complement(1371494..1372246) 1 NC_003366.1 similar to sp:EXOA_BACSU EXODEOXYRIBONUCLEASE (EC 3.1.11.2) from Bacillus subtilis (252 aa); 65.9% identity in 249 aa overlap; exodeoxyribonuclease III 1372246 exoA 989483 exoA Clostridium perfringens str. 13 exodeoxyribonuclease III NP_562090.1 1371494 R 195102 CDS NP_562091.1 18310157 989484 1372431..1372658 1 NC_003366.1 no significant homology.; hypothetical protein 1372658 989484 CPE1175 Clostridium perfringens str. 13 hypothetical protein NP_562091.1 1372431 D 195102 CDS NP_562092.1 18310158 989485 complement(1372966..1373388) 1 NC_003366.1 similar to gp:AF158628_1 hypothetical protein from Prochlorococcus PCC9511 (146 aa); 31.7% identity in 104 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1373388 989485 CPE1176 Clostridium perfringens str. 13 hypothetical protein NP_562092.1 1372966 R 195102 CDS NP_562093.1 18310159 989486 complement(1373711..1374289) 1 NC_003366.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1374289 pyrE 989486 pyrE Clostridium perfringens str. 13 orotate phosphoribosyltransferase NP_562093.1 1373711 R 195102 CDS NP_562094.1 18310160 989487 complement(1374440..1375339) 1 NC_003366.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 1375339 pyrD 989487 pyrD Clostridium perfringens str. 13 dihydroorotate dehydrogenase 1B NP_562094.1 1374440 R 195102 CDS NP_562095.1 18310161 989488 complement(1375359..1376099) 1 NC_003366.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+); dihydroorotate dehydrogenase electron transfer subunit 1376099 pyrZ 989488 pyrZ Clostridium perfringens str. 13 dihydroorotate dehydrogenase electron transfer subunit NP_562095.1 1375359 R 195102 CDS NP_562096.1 18310162 989489 complement(1376124..1376987) 1 NC_003366.1 OMP decarboxylase; OMPDCase; OMPdecase; type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1376987 pyrF 989489 pyrF Clostridium perfringens str. 13 orotidine 5'-phosphate decarboxylase NP_562096.1 1376124 R 195102 CDS NP_562097.1 18310163 989490 complement(1376997..1378196) 1 NC_003366.1 similar to sp:PYRC_AQUAE DIHYDROOROTASE (EC 3.5.2.3) (DHOASE) from Aquifex aeolicus (422 aa); 41.8% identity in 395 aa overlap; dihydroorotase 1378196 pyrC 989490 pyrC Clostridium perfringens str. 13 dihydroorotase NP_562097.1 1376997 R 195102 CDS NP_562098.1 18310164 989491 complement(1378218..1378376) 1 NC_003366.1 no significant homology.; hypothetical protein 1378376 989491 CPE1182 Clostridium perfringens str. 13 hypothetical protein NP_562098.1 1378218 R 195102 CDS NP_562099.1 18310165 989492 complement(1378381..1379304) 1 NC_003366.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 1379304 pyrB 989492 pyrB Clostridium perfringens str. 13 aspartate carbamoyltransferase NP_562099.1 1378381 R 195102 CDS NP_562100.1 18310166 989493 complement(1379716..1380495) 1 NC_003366.1 similar to pir:G75518 probable beta-lactamase from Deinococcus radiodurans (strain R1) (277 aa); 26.3% identity in 205 aa overlap; beta-lactamase 1380495 989493 CPE1184 Clostridium perfringens str. 13 beta-lactamase NP_562100.1 1379716 R 195102 CDS NP_562101.1 18310167 989494 complement(1380727..1381827) 1 NC_003366.1 similar to gp:AF159501_4 Pfk1(6-phosphofructokinase) (EC 2.7.1.11) from Myxococcus xanthus (361 aa); 48.6% identity in 360 aa overlap; 6-phosphofructokinase 1381827 pfk 989494 pfk Clostridium perfringens str. 13 6-phosphofructokinase NP_562101.1 1380727 R 195102 CDS NP_562102.1 18310168 989495 complement(1382037..1382951) 1 NC_003366.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1382951 uppP 989495 uppP Clostridium perfringens str. 13 undecaprenyl pyrophosphate phosphatase NP_562102.1 1382037 R 195102 CDS NP_562103.1 18310169 989496 complement(1383211..1384188) 1 NC_003366.1 similar to pir:H69848 mannose-6-phosphate isomerase homolog yjdE from Bacillus subtilis (315 aa); 38.8% identity in 307 aa overlap. 1 transmembrane region was found by PSORT; mannose-6-phosphate isomerase 1384188 manA 989496 manA Clostridium perfringens str. 13 mannose-6-phosphate isomerase NP_562103.1 1383211 R 195102 CDS NP_562104.1 18310170 989497 1384439..1385794 1 NC_003366.1 similar to pir:T31440 UDP-N-acetylmuramyl tripeptide synthetase homolog murC from Heliobacillus mobilis (455 aa); 31.3% identity in 438 aa overlap; UDP-N-acetylmuramyl tripeptide synthetase 1385794 989497 CPE1188 Clostridium perfringens str. 13 UDP-N-acetylmuramyl tripeptide synthetase NP_562104.1 1384439 D 195102 CDS NP_562105.1 18310171 989498 1385812..1386543 1 NC_003366.1 similar to pir:T31439 probable cobyric acid synthase CobQ from Heliobacillus mobilis (252 aa); 48.2% identity in 228 aa overlap; CobB/CobQ family glutamine amidotransferase 1386543 cobQ 989498 cobQ Clostridium perfringens str. 13 CobB/CobQ family glutamine amidotransferase NP_562105.1 1385812 D 195102 CDS NP_562106.1 18310172 989499 complement(1386523..1388070) 1 NC_003366.1 similar to pir:S56384 hypothetical 56.3K protein (genX-psd intergenic region) from Escherichia coli (514 aa); 52.1% identity in 484 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein 1388070 989499 CPE1190 Clostridium perfringens str. 13 hypothetical protein NP_562106.1 1386523 R 195102 CDS NP_562107.1 18310173 989500 1388384..1388962 1 NC_003366.1 partially similar to pir:S74741 hypothetical protein sll092 from Synechocystis sp. (strain PCC 6803) (184 aa); 39.8% identity in 103 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1388962 989500 CPE1191 Clostridium perfringens str. 13 hypothetical protein NP_562107.1 1388384 D 195102 CDS NP_562108.1 18310174 989501 complement(1388996..1390432) 1 NC_003366.1 similar to C-terminal of gp:AF049873_3 sensor protein from Lactococcus lacti (464 aa); 28% identity in 307 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; two-component sensor histidine kinase 1390432 989501 CPE1192 Clostridium perfringens str. 13 two-component sensor histidine kinase NP_562108.1 1388996 R 195102 CDS NP_562109.1 18310175 989502 complement(1390419..1391096) 1 NC_003366.1 similar to gpu:AP001511_42 two-component response regulator from Bacillus halodurans (232 aa); 47.5% identity in 223 aa overlap; two-component response regulator 1391096 989502 CPE1193 Clostridium perfringens str. 13 two-component response regulator NP_562109.1 1390419 R 195102 CDS NP_562110.1 18310176 989503 complement(1391335..1392597) 1 NC_003366.1 similar to pir:D70325 hypothetical protein aq_276 from Aquifex aeolicus (458 aa); 24.6% identity in 395 aa overlap; hypothetical protein 1392597 989503 CPE1194 Clostridium perfringens str. 13 hypothetical protein NP_562110.1 1391335 R 195102 CDS NP_562111.1 18310177 989504 complement(1392606..1395620) 1 NC_003366.1 partially similar to pir:F70325 conserved hypothetical protein aq_278 from Aquifex aeolicus (611 aa); 34.8% identity in 581 aa overlap.Also similar to pir:A72369 (R)-2-hydroxyglutaryl-CoA dehydratase activator-related protein from Thermotoga maritima (strain MSB8); hypothetical protein 1395620 989504 CPE1195 Clostridium perfringens str. 13 hypothetical protein NP_562111.1 1392606 R 195102 CDS NP_562112.1 18310178 989505 complement(1395825..1397813) 1 NC_003366.1 similar to pir:C72391 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (558 aa); 47.6% identity in 572 aa overlap; hypothetical protein 1397813 989505 CPE1196 Clostridium perfringens str. 13 hypothetical protein NP_562112.1 1395825 R 195102 CDS NP_562113.1 18310179 989506 complement(1398012..1400357) 1 NC_003366.1 similar to pir:B71116 probable helicase PH0697 from Pyrococcus horikoshii (641 aa); 28.3% identity in 594 aa overlap. 1 transmembrane region was found by PSORT; helicase 1400357 989506 CPE1197 Clostridium perfringens str. 13 helicase NP_562113.1 1398012 R 195102 CDS NP_562114.1 18310180 989507 complement(1400459..1400833) 1 NC_003366.1 similar to gpu:AP001514_169 BH2163 gene product from Bacillus halodurans (464 aa); 26.1% identity in 111 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing). 3 transmembrane regions were found by PSORT.; hypothetical protein 1400833 989507 CPE1198 Clostridium perfringens str. 13 hypothetical protein NP_562114.1 1400459 R 195102 CDS NP_562115.1 18310181 989508 complement(1400875..1401852) 1 NC_003366.1 similar to gpu:AP001514_169 BH2163 gene product from Bacillus halodurans (464 aa); 37.9% identity in 309 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing). 8 transmembrane regions were found by PSORT.; hypothetical protein 1401852 989508 CPE1199 Clostridium perfringens str. 13 hypothetical protein NP_562115.1 1400875 R 195102 CDS NP_562116.1 18310182 989509 complement(1402014..1403120) 1 NC_003366.1 similar to gp:AF248951_4 MdsC protein from Prevotella sp. RS2 (362 aa); 40.4% identity in 356 aa overlap; hypothetical protein 1403120 989509 CPE1200 Clostridium perfringens str. 13 hypothetical protein NP_562116.1 1402014 R 195102 CDS NP_562117.1 18310183 989510 complement(1403122..1404039) 1 NC_003366.1 partially similar to pir:D64437 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) from Methanococcus jannaschii (408 aa); 27.5% identity in 229 aa overlap; hypothetical protein 1404039 989510 CPE1201 Clostridium perfringens str. 13 hypothetical protein NP_562117.1 1403122 R 195102 CDS NP_562118.1 18310184 989511 1404296..1406902 1 NC_003366.1 similar to pir:H69877 calcium-transporting ATPase homolog yloB from Bacillus subtilis (890 aa); 42.3% identity in 855 aa overlap. 9 transmembrane regions were found by PSORT.; calcium-transporting ATPase 1406902 989511 CPE1202 Clostridium perfringens str. 13 calcium-transporting ATPase NP_562118.1 1404296 D 195102 CDS NP_562119.1 18310185 989512 complement(1406947..1408563) 1 NC_003366.1 similar to gpu:AP001518_108 spore cortex protein from Bacillus halodurans (539 aa); 22.1% identity in 403 aa overlap. N-terminal signal sequence and 12 transmembrane regions were found by PSORT.; stage V sporulation protein B 1408563 spoVB 989512 spoVB Clostridium perfringens str. 13 stage V sporulation protein B NP_562119.1 1406947 R 195102 CDS NP_562120.1 18310186 989513 complement(1408585..1409559) 1 NC_003366.1 similar to pir:D72316 ribosomal large subunit pseudouridine synthase C from Thermotoga maritima (strain MSB8) (304 aa); 36.3% identity in 289 aa overlap; ribosomal large subunit pseudouridine synthase C 1409559 989513 CPE1204 Clostridium perfringens str. 13 ribosomal large subunit pseudouridine synthase C NP_562120.1 1408585 R 195102 CDS NP_562121.1 18310187 989514 complement(1409630..1410814) 1 NC_003366.1 similar to pir:G71097 probable amidohydrolase from Pyrococcus horikoshii (387 aa); 43.6% identity in 390 aa overlap; amidohydrolase 1410814 989514 CPE1205 Clostridium perfringens str. 13 amidohydrolase NP_562121.1 1409630 R 195102 CDS NP_562122.1 18310188 989515 complement(1411020..1413014) 1 NC_003366.1 similar to sp:PCRA_STAAU ATP-DEPENDENT HELICASE PCRA (EC 3.6.1.-) from Staphylococcus aureus (675 aa); 31.3% identity in 578 aa overlap; ATP-dependent helicase 1413014 pcrA 989515 pcrA Clostridium perfringens str. 13 ATP-dependent helicase NP_562122.1 1411020 R 195102 CDS NP_562123.1 18310189 989516 1413167..1414639 1 NC_003366.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1414639 989516 CPE1207 Clostridium perfringens str. 13 nicotinate phosphoribosyltransferase NP_562123.1 1413167 D 195102 CDS NP_562124.1 18310190 989517 complement(1414693..1414869) 1 NC_003366.1 no significant homology.; hypothetical protein 1414869 989517 CPE1208 Clostridium perfringens str. 13 hypothetical protein NP_562124.1 1414693 R 195102 CDS NP_562125.1 18310191 989518 complement(1414899..1415234) 1 NC_003366.1 no significant homology.; hypothetical protein 1415234 989518 CPE1209 Clostridium perfringens str. 13 hypothetical protein NP_562125.1 1414899 R 195102 CDS NP_562126.1 18310192 989519 1415853..1416272 1 NC_003366.1 similar to gp:AF095596_1 ferric uptake regulator homolog from Staphylococcus aureus (148 aa); 30.4% identity in 138 aa overlap; FurR family; FUR family transcriptional regulator 1416272 989519 CPE1210 Clostridium perfringens str. 13 FUR family transcriptional regulator NP_562126.1 1415853 D 195102 CDS NP_562127.1 18310193 989520 complement(1416350..1417747) 1 NC_003366.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV 1417747 989520 CPE1211 Clostridium perfringens str. 13 dipeptidase PepV NP_562127.1 1416350 R 195102 CDS NP_562128.1 18310194 989521 complement(1417936..1419246) 1 NC_003366.1 similar to pir:F72329 uracil permease from Thermotoga maritima (strain MSB8) (399 aa); 52.5% identity in 413 aa overlap. 12 transmembrane regions were found by PSORT.; uracil permease 1419246 uraA 989521 uraA Clostridium perfringens str. 13 uracil permease NP_562128.1 1417936 R 195102 CDS NP_562129.1 18310195 989522 complement(1419531..1419737) 1 NC_003366.1 no significant homology.; hypothetical protein 1419737 989522 CPE1213 Clostridium perfringens str. 13 hypothetical protein NP_562129.1 1419531 R 195102 CDS NP_562130.1 18310196 989523 complement(1419709..1419942) 1 NC_003366.1 partially similar to pir:B75463 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (142 aa); 47.8% identity in 69 aa overlap; hypothetical protein 1419942 989523 CPE1214 Clostridium perfringens str. 13 hypothetical protein NP_562130.1 1419709 R 195102 CDS NP_562131.1 18310197 989524 complement(1420122..1420595) 1 NC_003366.1 similar to prf:2513373E Fe uptake system:SUBUNIT=permease from Streptomyces coelicolor (271 aa); 45.6% identity in 136 aa overlap.; ATP-binding protein; ABC transporter 1420595 989524 CPE1215 Clostridium perfringens str. 13 ABC transporter NP_562131.1 1420122 R 195102 CDS NP_562132.1 18310198 989525 complement(1420728..1420877) 1 NC_003366.1 no significant homology.; hypothetical protein 1420877 989525 CPE1216 Clostridium perfringens str. 13 hypothetical protein NP_562132.1 1420728 R 195102 CDS NP_562133.1 18310199 989526 complement(1420883..1421941) 1 NC_003366.1 similar to pir:G75619 probable hemin ABC transporter, permease from Deinococcus radiodurans (strain R1) (354 aa); 37.9% identity in 282 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; permease; ABC transporter 1421941 989526 CPE1217 Clostridium perfringens str. 13 ABC transporter NP_562133.1 1420883 R 195102 CDS NP_562134.1 18310200 989527 complement(1422029..1423030) 1 NC_003366.1 similar to pir:G70046 iron-binding protein homolog yvrC from Bacillus subtilis (314 aa); 25.8% identity in 229 aa overlap; binding protein; ABC transporter 1423030 989527 CPE1218 Clostridium perfringens str. 13 ABC transporter NP_562134.1 1422029 R 195102 CDS NP_562135.1 18310201 989528 complement(1423043..1423807) 1 NC_003366.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 1423807 cbiJ 989528 cbiJ Clostridium perfringens str. 13 cobalt-precorrin-6x reductase NP_562135.1 1423043 R 195102 CDS NP_562136.1 18310202 989529 complement(1423826..1424548) 1 NC_003366.1 catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine; precorrin-3B C(17)-methyltransferase 1424548 cbiH 989529 cbiH Clostridium perfringens str. 13 precorrin-3B C(17)-methyltransferase NP_562136.1 1423826 R 195102 CDS NP_562137.1 18310203 989530 complement(1424703..1425701) 1 NC_003366.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG 1425701 cbiG 989530 cbiG Clostridium perfringens str. 13 cobalamin biosynthesis protein CbiG NP_562137.1 1424703 R 195102 CDS NP_562138.1 18310204 989531 complement(1425704..1426459) 1 NC_003366.1 similar to pir:A64497 precorrin-3 methylase from Methanococcus jannaschii (259 aa); 54.9% identity in 244 aa overlap. 1 transmembrane region was found by PSORT; precorrin-4 C(11)-methyltransferase 1426459 cbiF 989531 cbiF Clostridium perfringens str. 13 precorrin-4 C(11)-methyltransferase NP_562138.1 1425704 R 195102 CDS NP_562139.1 18310205 989532 complement(1426510..1427172) 1 NC_003366.1 catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase 1427172 cbiL 989532 cbiL Clostridium perfringens str. 13 cobalt-precorrin-2 C(20)-methyltransferase NP_562139.1 1426510 R 195102 CDS NP_562140.1 18310206 989533 complement(1427172..1427765) 1 NC_003366.1 similar to sp:CBIT_SALTY PRECORRIN-8W DECARBOXYLASE (EC 1.-.-.-) from Salmonella typhimurium (192 aa); 29.9% identity in 194 aa overlap; precorrin-6Y C5,15-methyltransferase subunit CbiT 1427765 cbiT 989533 cbiT Clostridium perfringens str. 13 precorrin-6Y C5,15-methyltransferase subunit CbiT NP_562140.1 1427172 R 195102 CDS NP_562141.1 18310207 989534 complement(1427785..1428396) 1 NC_003366.1 similar to sp:COBL_METJA PROBABLE PRECORRIN-6Y C5,15-METHYLTRANSFERASE [DECARBOXYLATING] (EC 2.1.1.132) (PRECORRIN-6 METHYLTRANSFERASE) (PRECORRIN-6Y METHYLASE) from Methanococcus jannaschii (211 aa); 36.6% identity in 202 aa overlap; precorrin-6y C5,15-methyltransferase (decarboxylating) 1428396 cbiE 989534 cbiE Clostridium perfringens str. 13 precorrin-6y C5,15-methyltransferase (decarboxylating) NP_562141.1 1427785 R 195102 CDS NP_562142.1 18310208 989535 complement(1428424..1429521) 1 NC_003366.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 1429521 cbiD 989535 cbiD Clostridium perfringens str. 13 cobalt-precorrin-6A synthase NP_562142.1 1428424 R 195102 CDS NP_562143.1 18310209 989536 complement(1429539..1430168) 1 NC_003366.1 catalyzes the interconversion of precorrin-8X and cobyrinic acid; precorrin-8X methylmutase 1430168 cbiC 989536 cbiC Clostridium perfringens str. 13 precorrin-8X methylmutase NP_562143.1 1429539 R 195102 CDS NP_562144.1 18310210 989537 complement(1430168..1431010) 1 NC_003366.1 similar to sp:CBIK_SALTY CBIK PROTEIN from Salmonella typhimurium (264 aa); 36.8% identity in 261 aa overlap; CbiK protein 1431010 cbiK 989537 cbiK Clostridium perfringens str. 13 CbiK protein NP_562144.1 1430168 R 195102 CDS NP_562145.1 18310211 989538 1431530..1432762 1 NC_003366.1 similar to prf:2015382A ORF 1 from Clostridium perfringens (80 aa); 60% identity in 75 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1432762 989538 CPE1229 Clostridium perfringens str. 13 hypothetical protein NP_562145.1 1431530 D 195102 CDS NP_562146.1 18310212 989539 complement(1432782..1433090) 1 NC_003366.1 no significant homology. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1433090 989539 CPE1230 Clostridium perfringens str. 13 hypothetical protein NP_562146.1 1432782 R 195102 CDS NP_562147.1 18310213 989540 complement(1433358..1436747) 1 NC_003366.1 similar to pir:T30290 AAS surface protein from Staphylococcus saprophyticus (1463 aa); 25.4% identity in 764 aa overlap.Also similar to pir:T30211 autolysin E from Staphylococcus epidermidis; gp:AF192767_1 enterotoxin from Bacillus cereus. N-terminal signal sequence was found by PSORT; surface protein 1436747 989540 CPE1231 Clostridium perfringens str. 13 surface protein NP_562147.1 1433358 R 195102 CDS NP_562148.1 18310214 989541 complement(1437121..1438122) 1 NC_003366.1 no significant homology.; hypothetical protein 1438122 989541 CPE1232 Clostridium perfringens str. 13 hypothetical protein NP_562148.1 1437121 R 195102 CDS NP_562149.1 18310215 989542 complement(1438156..1438854) 1 NC_003366.1 no significant homology.; hypothetical protein 1438854 989542 CPE1233 Clostridium perfringens str. 13 hypothetical protein NP_562149.1 1438156 R 195102 CDS NP_562150.1 18310216 989543 complement(1439365..1442370) 1 NC_003366.1 similar to sp:NAGH_CLOPE HYALURONOGLUCOSAMINIDASE PRECURSOR (EC 3.2.1.35) (HYALURONIDASE) (MU TOXIN) from Clostridium perfringens (1042 aa); 27.2% identity in 736 aa overlap. N-terminal signal sequence was found by PSORT; mu-toxin; hyaluronidase 1442370 nagJ 989543 nagJ Clostridium perfringens str. 13 hyaluronidase NP_562150.1 1439365 R 195102 CDS NP_562151.1 18310217 989544 complement(1442598..1443551) 1 NC_003366.1 partially similar to pir:T29435 hypothetical protein SC3A7.16c from Streptomyces coelicolor (1361 aa); 23.5% identity in 226 aa overlap; hypothetical protein 1443551 989544 CPE1235 Clostridium perfringens str. 13 hypothetical protein NP_562151.1 1442598 R 195102 CDS NP_562152.1 18310218 989545 complement(1443783..1444466) 1 NC_003366.1 similar to gp:CPSUPOXID_1 superoxide dismutase from Clostridium perfringens (227 aa); 95.6% identity in 227 aa overlap. (EC 1.15.1.1); Mn/Fe superoxide dismutase 1444466 sod 989545 sod Clostridium perfringens str. 13 Mn/Fe superoxide dismutase NP_562152.1 1443783 R 195102 CDS NP_562153.1 18310219 989546 complement(1444528..1445139) 1 NC_003366.1 no significant homology. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 1445139 989546 CPE1237 Clostridium perfringens str. 13 hypothetical protein NP_562153.1 1444528 R 195102 CDS NP_562154.1 18310220 989547 1445449..1446897 1 NC_003366.1 similar to pir:B69532 multidrug resistance protein homolog from Archaeoglobus fulgidus (503 aa); 31.3% identity in 400 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; multidrug resistance protein 1446897 989547 CPE1238 Clostridium perfringens str. 13 multidrug resistance protein NP_562154.1 1445449 D 195102 CDS NP_562155.1 18310221 989548 complement(1446957..1447121) 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1447121 989548 CPE1239 Clostridium perfringens str. 13 hypothetical protein NP_562155.1 1446957 R 195102 CDS NP_562156.1 18310222 989549 complement(1447152..1448489) 1 NC_003366.1 similar to gpu:AP001508_234 magnesium (Mg2+) transporter from Bacillus halodurans (452 aa); 35% identity in 360 aa overlap. 5 transmembrane regions were found by PSORT.; magnesium transporter 1448489 989549 CPE1240 Clostridium perfringens str. 13 magnesium transporter NP_562156.1 1447152 R 195102 CDS NP_562157.1 18310223 989550 complement(1449030..1449803) 1 NC_003366.1 similar to prf:2316406C membrane protein from Staphylococcus gallinarum (330 aa); 32.2% identity in 242 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1449803 989550 CPE1241 Clostridium perfringens str. 13 hypothetical protein NP_562157.1 1449030 R 195102 CDS NP_562158.1 18310224 989551 1450066..1450275 1 NC_003366.1 similar to gp:LMCSPLGEN_1 CspL protein from Listeria monocytogenes (68 aa); 55.9% identity in 68 aa overlap; cold shock protein 1450275 cspL 989551 cspL Clostridium perfringens str. 13 cold shock protein NP_562158.1 1450066 D 195102 CDS NP_562159.1 18310225 989552 complement(1450428..1450634) 1 NC_003366.1 no significant homology.; hypothetical protein 1450634 989552 CPE1243 Clostridium perfringens str. 13 hypothetical protein NP_562159.1 1450428 R 195102 CDS NP_562160.1 18310226 989553 complement(1450681..1451151) 1 NC_003366.1 similar to pir:A69760 conserved hypothetical protein yciB from Bacillus subtilis (194 aa); 35.3% identity in 116 aa overlap; hypothetical protein 1451151 989553 CPE1244 Clostridium perfringens str. 13 hypothetical protein NP_562160.1 1450681 R 195102 CDS NP_562161.1 18310227 989554 complement(1451269..1452240) 1 NC_003366.1 similar to sp:YULF_BACSU HYPOTHETICAL 36.5 KDA PROTEIN IN GBSA-TLPB INTERGENIC REGION from Bacillus subtilis (328 aa); 28.4% identity in 320 aa overlap; hypothetical protein 1452240 989554 CPE1245 Clostridium perfringens str. 13 hypothetical protein NP_562161.1 1451269 R 195102 CDS NP_562162.1 18310228 989555 1452414..1452662 1 NC_003366.1 no significant homology. 2 transmembrane regions were found by PSORT.; hypothetical protein 1452662 989555 CPE1246 Clostridium perfringens str. 13 hypothetical protein NP_562162.1 1452414 D 195102 CDS NP_562163.1 18310229 989556 complement(1452739..1455294) 1 NC_003366.1 similar to gp:D85082_8 YfiX from Bacillus subtilis (610 aa); 36.1% identity in 581 aa overlap. N-terminal signal sequence and 13 transmembrane regions were found by PSORT.; hypothetical protein 1455294 989556 CPE1247 Clostridium perfringens str. 13 hypothetical protein NP_562163.1 1452739 R 195102 CDS NP_562164.1 18310230 989557 complement(1455868..1456806) 1 NC_003366.1 similar to pir:A69805 hypothetical protein yfiW from Bacillus subtilis (258 aa); 31.8% identity in 195 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 1456806 989557 CPE1248 Clostridium perfringens str. 13 hypothetical protein NP_562164.1 1455868 R 195102 CDS NP_562165.1 18310231 989558 complement(1456945..1457436) 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1457436 989558 CPE1249 Clostridium perfringens str. 13 hypothetical protein NP_562165.1 1456945 R 195102 CDS NP_562166.1 18310232 989559 complement(1457655..1458872) 1 NC_003366.1 partially similar to pir:A64465 hypothetical protein MJ1322 from Methanococcus jannaschii (1005 aa); 25.8% identity in 411 aa overlap; hypothetical protein 1458872 989559 CPE1250 Clostridium perfringens str. 13 hypothetical protein NP_562166.1 1457655 R 195102 CDS NP_562167.1 18310233 989560 complement(1458882..1459865) 1 NC_003366.1 partially similar to pir:B70356 chromosome assembly protein homolog from Aquifex aeolicus (1156 aa); 23% identity in 291 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1459865 989560 CPE1251 Clostridium perfringens str. 13 hypothetical protein NP_562167.1 1458882 R 195102 CDS NP_562168.1 18310234 989561 complement(1460384..1461106) 1 NC_003366.1 similar to gpu:AE004082_1 conserved hypothetical protei from Xylella fastidiosa (253 aa); 39.7% identity in 234 aa overlap. 7 transmembrane regions were found by PSORT.; hypothetical protein 1461106 989561 CPE1252 Clostridium perfringens str. 13 hypothetical protein NP_562168.1 1460384 R 195102 CDS NP_562169.1 18310235 989562 complement(1461286..1461624) 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1461624 989562 CPE1253 Clostridium perfringens str. 13 hypothetical protein NP_562169.1 1461286 R 195102 CDS NP_562170.1 18310236 989563 complement(1461651..1463057) 1 NC_003366.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 1463057 gltB 989563 gltB Clostridium perfringens str. 13 oxidoreductase NP_562170.1 1461651 R 195102 CDS NP_562171.1 18310237 989564 complement(1463050..1463949) 1 NC_003366.1 similar to pir:F75069 hydrogenase, chain gamma related protein PAB1737 from Pyrococcus abyssi (strain Orsay) (278 aa); 51.5% identity in 272 aa overlap. 1 transmembrane region was found by PSORT; ferredoxin-NADP reductase 1463949 hydG 989564 hydG Clostridium perfringens str. 13 ferredoxin-NADP reductase NP_562171.1 1463050 R 195102 CDS NP_562172.1 18310238 989565 complement(1464100..1465266) 1 NC_003366.1 similar to sp:ADH1_CLOAB NADPH-DEPENDENT BUTANOL DEHYDROGENASE (EC 1.1.1.-) (BDH) from Clostridium acetobutylicum (388 aa); 69.6% identity in 388 aa overlap; NADPH-dependent butanol dehydrogenase 1465266 bdhB 989565 bdhB Clostridium perfringens str. 13 NADPH-dependent butanol dehydrogenase NP_562172.1 1464100 R 195102 CDS NP_562173.1 18310239 989566 complement(1465378..1466829) 1 NC_003366.1 similar to gpu:AP001509_234 BH0796 gene product from Bacillus halodurans (500 aa); 43.6% identity in 459 aa overlap; hypothetical protein 1466829 989566 CPE1257 Clostridium perfringens str. 13 hypothetical protein NP_562173.1 1465378 R 195102 CDS NP_562174.1 18310240 989567 1467436..1470303 1 NC_003366.1 similar to gp:AF192766_1 enterotoxin from Bacillus cereus (419 aa); 23.2% identity in 224 aa overlap; enterotoxin 1470303 entA 989567 entA Clostridium perfringens str. 13 enterotoxin NP_562174.1 1467436 D 195102 CDS NP_562175.1 18310241 989568 complement(1470518..1471432) 1 NC_003366.1 partially similar to gp:AF102543_8 unknown from Zymomonas mobilis (318 aa); 40.8% identity in 120 aa overlap; hypothetical protein 1471432 989568 CPE1259 Clostridium perfringens str. 13 hypothetical protein NP_562175.1 1470518 R 195102 CDS NP_562176.1 18310242 989569 complement(1471730..1472500) 1 NC_003366.1 similar to prf:2408488H ORF 142 from Streptococcus thermophilus phage TP-J34 (142 aa); 42.5% identity in 120 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1472500 989569 CPE1260 Clostridium perfringens str. 13 hypothetical protein NP_562176.1 1471730 R 195102 CDS NP_562177.1 18310243 989570 complement(1472753..1473373) 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1473373 989570 CPE1261 Clostridium perfringens str. 13 hypothetical protein NP_562177.1 1472753 R 195102 CDS NP_562178.1 18310244 989571 1473706..1473876 1 NC_003366.1 no significant homology.; hypothetical protein 1473876 989571 CPE1262 Clostridium perfringens str. 13 hypothetical protein NP_562178.1 1473706 D 195102 CDS NP_562179.1 18310245 989572 1474429..1474893 1 NC_003366.1 similar to sp:GREA_RHIME TRANSCRIPTION ELONGATION FACTOR GREA (TRANSCRIPT CLEAVAGE FACTOR GREA) from Sinorhizobium meliloti (158 aa); 29.5% identity in 149 aa overlap; transcription elongation factor GreA 1474893 greA 989572 greA Clostridium perfringens str. 13 transcription elongation factor GreA NP_562179.1 1474429 D 195102 CDS NP_562180.1 18310246 989573 complement(1475202..1479968) 1 NC_003366.1 partially similar to sp:NANH_MICVI SIALIDASE PRECURSOR (EC 3.2.1.18) (NEURAMINIDASE) from Micromonospora viridifaciens (647 aa); 36.1% identity in 119 aa overlap. N-terminal signal sequence was found by PSORT; sialidase-like protein 1479968 989573 CPE1264 Clostridium perfringens str. 13 sialidase-like protein NP_562180.1 1475202 R 195102 CDS NP_562181.1 18310247 989574 1480226..1481989 1 NC_003366.1 no significant homology.; hypothetical protein 1481989 989574 CPE1265 Clostridium perfringens str. 13 hypothetical protein NP_562181.1 1480226 D 195102 CDS NP_562182.1 18310248 989575 complement(1482112..1486179) 1 NC_003366.1 similar to gpu:AF282987_1 beta-galactosidase precursor from Streptococcus pneumoniae (2233 aa); 42.9% identity in 907 aa overlap. N-terminal signal sequence was found by PSORT; beta-galactosidase 1486179 989575 CPE1266 Clostridium perfringens str. 13 beta-galactosidase NP_562182.1 1482112 R 195102 CDS NP_562183.1 18310249 989576 complement(1486429..1487763) 1 NC_003366.1 similar to sp:YF05_METTH HYPOTHETICAL PROTEIN MTH1505 from Methanobacterium thermoautotrophicum (427 aa); 36.7% identity in 379 aa overlap; hypothetical protein 1487763 989576 CPE1267 Clostridium perfringens str. 13 hypothetical protein NP_562183.1 1486429 R 195102 CDS NP_562184.1 18310250 989577 complement(1487900..1489618) 1 NC_003366.1 similar to sp:ADEC_METTH PROBABLE ADENINE DEAMINASE (EC 3.5.4.2) (ADENASE) (ADENINE AMINASE). from Methanobacterium thermoautotrophicum (strain Delta H) (538 aa); 34.7% identity in 513 aa overlap; adenine deaminase 1489618 adeC 989577 adeC Clostridium perfringens str. 13 adenine deaminase NP_562184.1 1487900 R 195102 CDS NP_562185.1 18310251 989578 complement(1489634..1490680) 1 NC_003366.1 similar to pir:H64117 spermidine/putrescine-binding protein 1 precursor HI1344 from Haemophilus influenzae (strain Rd KW20) (379 aa); 27.2% identity in 298 aa overlap; spermidine/putrescine-binding protein 1 1490680 989578 CPE1269 Clostridium perfringens str. 13 spermidine/putrescine-binding protein 1 NP_562185.1 1489634 R 195102 CDS NP_562186.1 18310252 989579 complement(1490720..1491751) 1 NC_003366.1 similar to gpu:AB039932_2 riorf36 gene product from Agrobacterium rhizogenes (352 aa); 42.9% identity in 280 aa overlap. 1 transmembrane region was found by PSORT; ATP-binding protein; ABC transporter 1491751 989579 CPE1270 Clostridium perfringens str. 13 ABC transporter NP_562186.1 1490720 R 195102 CDS NP_562187.1 18310253 989580 complement(1491787..1492569) 1 NC_003366.1 similar to gp:BLLAMLCHA_1 inner membrane protein from Bacillus licheniformis (270 aa); 37.1% identity in 245 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permease; ABC transporter 1492569 989580 CPE1271 Clostridium perfringens str. 13 ABC transporter NP_562187.1 1491787 R 195102 CDS NP_562188.1 18310254 989581 complement(1492571..1492909) 1 NC_003366.1 partially similar to prf:2220324B attA2 gene from Agrobacterium tumefaciens (300 aa); 42.9% identity in 112 aa overlap.Also partially similar to many ABC transporter proteins (permease). 2 transmembrane regions were found by PSORT.; hypothetical protein 1492909 989581 CPE1272 Clostridium perfringens str. 13 hypothetical protein NP_562188.1 1492571 R 195102 CDS NP_562189.1 18310255 989582 complement(1493064..1493399) 1 NC_003366.1 partially similar to gpu:AB039932_1 riorf35 gene product from Agrobacterium rhizogenes (283 aa); 34% identity in 103 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1493399 989582 CPE1273 Clostridium perfringens str. 13 hypothetical protein NP_562189.1 1493064 R 195102 CDS NP_562190.1 18310256 989583 complement(1493787..1494935) 1 NC_003366.1 partially similar to sp:FLIB_SALTY LYSINE-N-METHYLASE (EC 2.1.1.-) (LYSINE N-METHYLTRANSFERASE) from Salmonella typhimurium (401 aa); 21.8% identity in 394 aa overlap. 1 transmembrane region was found by PSORT; lysine-N-methylase 1494935 989583 CPE1274 Clostridium perfringens str. 13 lysine-N-methylase NP_562190.1 1493787 R 195102 CDS NP_562191.1 18310257 989584 complement(1495134..1496099) 1 NC_003366.1 similar to pir:C81429 probable transcription regulator Cj0123c from Campylobacter jejuni (strain NCTC 11168) (308 aa); 29% identity in 252 aa overlap; dihydrouridine synthase 1496099 989584 CPE1275 Clostridium perfringens str. 13 dihydrouridine synthase NP_562191.1 1495134 R 195102 CDS NP_562192.1 18310258 989585 complement(1496203..1497573) 1 NC_003366.1 similar to gpu:AP001514_169 BH2163 gene product from Bacillus halodurans (464 aa); 33.2% identity in 422 aa overlap; hypothetical protein 1497573 989585 CPE1276 Clostridium perfringens str. 13 hypothetical protein NP_562192.1 1496203 R 195102 CDS NP_562193.1 18310259 989586 complement(1497946..1498287) 1 NC_003366.1 similar to gp:LSEXOGC_3 L.sake gene cluster from Lactobacillus sakei (117 aa); 50% identity in 88 aa overlap. 10 transmembrane regions were found by PSORT.; hypothetical protein 1498287 989586 CPE1277 Clostridium perfringens str. 13 hypothetical protein NP_562193.1 1497946 R 195102 CDS NP_562194.1 18310260 989587 complement(1498299..1500215) 1 NC_003366.1 similar to gp:LSEXOGC_2 L.sake gene cluster from Lactobacillus sakei (645 aa); 61.4% identity in 573 aa overlap. 16 transmembrane regions were found by PSORT.; oligopeptide transporter 1500215 989587 CPE1278 Clostridium perfringens str. 13 oligopeptide transporter NP_562194.1 1498299 R 195102 CDS NP_562195.1 18310261 989588 complement(1500861..1504352) 1 NC_003366.1 similar to sp:NAGH_CLOPE HYALURONOGLUCOSAMINIDASE PRECURSOR (EC 3.2.1.35) (HYALURONIDASE) (MU TOXIN) from Clostridium perfringens (1042 aa); 37.8% identity in 874 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; mu-toxin; hyaluronidase 1504352 nagK 989588 nagK Clostridium perfringens str. 13 hyaluronidase NP_562195.1 1500861 R 195102 CDS NP_562196.1 18310262 989589 complement(1504584..1504736) 1 NC_003366.1 no significant homology.; hypothetical protein 1504736 989589 CPE1280 Clostridium perfringens str. 13 hypothetical protein NP_562196.1 1504584 R 195102 CDS NP_562197.1 18310263 989590 complement(1505003..1510066) 1 NC_003366.1 partially similar to pir:T36472 probable secreted alpha-galactosidase from Streptomyces coelicolor (680 aa); 33.6% identity in 140 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1510066 989590 CPE1281 Clostridium perfringens str. 13 hypothetical protein NP_562197.1 1505003 R 195102 CDS NP_562198.1 18310264 989591 complement(1510515..1511903) 1 NC_003366.1 similar to prf:2516401T transmembrane protein from Bacillus cereus (441 aa); 25.5% identity in 377 aa overlap. 13 transmembrane regions were found by PSORT.; transmembrane protein 1511903 989591 CPE1282 Clostridium perfringens str. 13 transmembrane protein NP_562198.1 1510515 R 195102 CDS NP_562199.1 18310265 989592 1512322..1513071 1 NC_003366.1 similar to gpu:AP001515_128 transcriptional regulator (GntR family) from Bacillus halodurans (242 aa); 24.9% identity in 229 aa overlap; GntR family; transcriptional regulator 1513071 989592 CPE1283 Clostridium perfringens str. 13 transcriptional regulator NP_562199.1 1512322 D 195102 CDS NP_562200.1 18310266 989593 complement(1513189..1514370) 1 NC_003366.1 similar to gp:D45912_25 pyrimidine nucleoside transport protein from Bacillus subtilis (393 aa); 71.7% identity in 392 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; pyrimidine nucleoside transporter 1514370 989593 CPE1284 Clostridium perfringens str. 13 pyrimidine nucleoside transporter NP_562200.1 1513189 R 195102 CDS NP_562201.1 18310267 989594 complement(1514831..1515928) 1 NC_003366.1 no significant homology.; peptidase, S41 family 1515928 989594 CPE1285 Clostridium perfringens str. 13 peptidase, S41 family NP_562201.1 1514831 R 195102 CDS NP_562202.1 18310268 989595 1516256..1516708 1 NC_003366.1 similar to gpu:AE004385_4 conserved hypothetical protein from Vibrio cholerae (170 aa); 43.8% identity in 144 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1516708 989595 CPE1286 Clostridium perfringens str. 13 hypothetical protein NP_562202.1 1516256 D 195102 CDS NP_562203.1 18310269 989596 complement(1516999..1519614) 1 NC_003366.1 partially similar to pir:C72285 hypothetical protein from Thermotoga maritima (strain MSB8) (718 aa); 22.8% identity in 487 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 1519614 989596 CPE1287 Clostridium perfringens str. 13 hypothetical protein NP_562203.1 1516999 R 195102 CDS NP_562204.1 18310270 989597 complement(1520263..1521327) 1 NC_003366.1 partially similar to gp:HC11504_1 DNA-polymerase from Hebeloma circinans (858 aa); 23.8% identity in 336 aa overlap; hypothetical protein 1521327 989597 CPE1288 Clostridium perfringens str. 13 hypothetical protein NP_562204.1 1520263 R 195102 CDS NP_562205.1 18310271 989598 complement(1521612..1523180) 1 NC_003366.1 partially similar to pir:H81403 hypothetical protein Cj0569 from Campylobacter jejuni (strain NCTC 11168) (289 aa); 43.8% identity in 272 aa overlap. 2 transmembrane regions were found by PSORT.; hypothetical protein 1523180 989598 CPE1289 Clostridium perfringens str. 13 hypothetical protein NP_562205.1 1521612 R 195102 CDS NP_562206.1 18310272 989599 complement(1523220..1524911) 1 NC_003366.1 similar to pir:E81403 hypothetical protein Cj0566 from Campylobacter jejuni (strain NCTC 11168) (488 aa); 22.4% identity in 504 aa overlap. 2 transmembrane regions were found by PSORT.; hypothetical protein 1524911 989599 CPE1290 Clostridium perfringens str. 13 hypothetical protein NP_562206.1 1523220 R 195102 CDS NP_562207.1 18310273 989600 complement(1525991..1526173) 1 NC_003366.1 no significant homology.; hypothetical protein 1526173 989600 CPE1291 Clostridium perfringens str. 13 hypothetical protein NP_562207.1 1525991 R 195102 CDS NP_562208.1 18310274 989601 complement(1526730..1527308) 1 NC_003366.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 1527308 xpt 989601 xpt Clostridium perfringens str. 13 xanthine phosphoribosyltransferase NP_562208.1 1526730 R 195102 CDS NP_562209.1 18310275 989602 1527481..1528470 1 NC_003366.1 similar to pir:F69210 conserved hypothetical protein MTH83 from Methanobacterium thermoautotrophicum (strain Delta H) (379 aa); 30.9% identity in 223 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1528470 989602 CPE1293 Clostridium perfringens str. 13 hypothetical protein NP_562209.1 1527481 D 195102 CDS NP_562210.1 18310276 989603 complement(1528817..1529425) 1 NC_003366.1 partially similar to pir:G36891 transfer complex protein TrsF from Staphylococcus aureus (426 aa); 28.7% identity in 108 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1529425 989603 CPE1294 Clostridium perfringens str. 13 hypothetical protein NP_562210.1 1528817 R 195102 CDS NP_562211.1 18310277 989604 complement(1529901..1530371) 1 NC_003366.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1530371 smpB 989604 smpB Clostridium perfringens str. 13 SsrA-binding protein NP_562211.1 1529901 R 195102 CDS NP_562212.1 18310278 989605 complement(1530963..1533218) 1 NC_003366.1 similar to sp:RNR_BACSU RIBONUCLEASE R (EC 3.1.-.-) (RNASE R) (VACB PROTEIN HOMOLOG) from Bacillus subtilis (779 aa); 52.8% identity in 703 aa overlap; ribonuclease R 1533218 rnr 989605 rnr Clostridium perfringens str. 13 ribonuclease R NP_562212.1 1530963 R 195102 CDS NP_562213.1 18310279 989606 complement(1533451..1533681) 1 NC_003366.1 similar to sp:SECG_BACSU PROBABLE PROTEIN-EXPORT MEMBRANE PROTEIN SECG from Bacillus subtilis (76 aa); 30.6% identity in 72 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; preprotein translocase subunit SecG 1533681 secG 989606 secG Clostridium perfringens str. 13 preprotein translocase subunit SecG NP_562213.1 1533451 R 195102 CDS NP_562214.1 18310280 989607 complement(1533885..1534433) 1 NC_003366.1 similar to pir:A69818 hypothetical protein yhaG from Bacillus subtilis (172 aa); 40.3% identity in 176 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 1534433 989607 CPE1298 Clostridium perfringens str. 13 hypothetical protein NP_562214.1 1533885 R 195102 CDS NP_562215.1 18310281 989608 complement(1535696..1536991) 1 NC_003366.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1536991 eno 989608 eno Clostridium perfringens str. 13 phosphopyruvate hydratase NP_562215.1 1535696 R 195102 CDS NP_562216.1 18310282 989609 complement(1537694..1539151) 1 NC_003366.1 similar to prf:2408418B gadC gene from Lactococcus lactis (503 aa); 58.1% identity in 475 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; extreme acid sensitivity protein; amino acid antiporter 1539151 989609 CPE1300 Clostridium perfringens str. 13 amino acid antiporter NP_562216.1 1537694 R 195102 CDS NP_562217.1 18310283 989610 complement(1539718..1541256) 1 NC_003366.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 1541256 pgm 989610 pgm Clostridium perfringens str. 13 phosphoglyceromutase NP_562217.1 1539718 R 195102 CDS NP_562218.1 18310284 989611 complement(1541381..1542127) 1 NC_003366.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1542127 tpiA 989611 tpiA Clostridium perfringens str. 13 triosephosphate isomerase NP_562218.1 1541381 R 195102 CDS NP_562219.1 18310285 989612 complement(1542371..1543564) 1 NC_003366.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1543564 pgk 989612 pgk Clostridium perfringens str. 13 phosphoglycerate kinase NP_562219.1 1542371 R 195102 CDS NP_562220.1 18310286 989613 complement(1543708..1544706) 1 NC_003366.1 similar to gp:AF043386_2 glyceraldehyde-3-phosphate dehydrogenase from Clostridium acetobutylicum (334 aa); 78.8% identity in 326 aa overlap. (EC 1.2.1.12); glyceraldehyde-3-phosphate dehydrogenase, type I 1544706 gapC 989613 gapC Clostridium perfringens str. 13 glyceraldehyde-3-phosphate dehydrogenase, type I NP_562220.1 1543708 R 195102 CDS NP_562221.1 18310287 989614 complement(1544797..1545876) 1 NC_003366.1 similar to gp:AF043386_1 unknown from Clostridium acetobutylicum (276 aa); 45.6% identity in 272 aa overlap; SorC family; transcriptional regulator 1545876 989614 CPE1305 Clostridium perfringens str. 13 transcriptional regulator NP_562221.1 1544797 R 195102 CDS NP_562222.1 18310288 989615 complement(1546057..1547442) 1 NC_003366.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 1547442 sigL 989615 sigL Clostridium perfringens str. 13 RNA polymerase factor sigma-54 NP_562222.1 1546057 R 195102 CDS NP_562223.1 18310289 989616 complement(1547694..1548461) 1 NC_003366.1 similar to gpu:AP001510_28 BH0853 gene product from Bacillus halodurans (227 aa); 36.8% identity in 209 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1548461 989616 CPE1307 Clostridium perfringens str. 13 hypothetical protein NP_562223.1 1547694 R 195102 CDS NP_562224.1 18310290 989617 complement(1548448..1548957) 1 NC_003366.1 no significant homology. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 1548957 989617 CPE1308 Clostridium perfringens str. 13 hypothetical protein NP_562224.1 1548448 R 195102 CDS NP_562225.1 18310291 989618 complement(1549560..1550630) 1 NC_003366.1 similar to prf:2501364A surface protein from Listeria monocytogenes (357 aa); 36.3% identity in 336 aa overlap; hypothetical protein 1550630 989618 CPE1309 Clostridium perfringens str. 13 hypothetical protein NP_562225.1 1549560 R 195102 CDS NP_562226.1 18310292 989619 complement(1550721..1551560) 1 NC_003366.1 similar to prf:2509371A grrY gene:SUBUNIT=selenoprotein B from Eubacterium acidaminophilum (280 aa); 32.4% identity in 275 aa overlap. 2 transmembrane regions were found by PSORT.; degV family protein 1551560 989619 CPE1310 Clostridium perfringens str. 13 degV family protein NP_562226.1 1550721 R 195102 CDS NP_562227.1 18310293 989620 complement(1551575..1552036) 1 NC_003366.1 similar to prf:2217197C ORF from Bacillus circulans alkalophilus (144 aa); 41.8% identity in 141 aa overlap. Also similar to many rRNA methylases; hypothetical protein 1552036 989620 CPE1311 Clostridium perfringens str. 13 hypothetical protein NP_562227.1 1551575 R 195102 CDS NP_562228.1 18310294 989621 complement(1552125..1552958) 1 NC_003366.1 similar to sp:YXEH_BACSU HYPOTHETICAL 30.2 KDA PROTEIN IN IDH-DEOR INTERGENIC REGION from Bacillus subtilis (270 aa); 35.3% identity in 272 aa overlap; HAD hydrolase 1552958 989621 CPE1312 Clostridium perfringens str. 13 HAD hydrolase NP_562228.1 1552125 R 195102 CDS NP_562229.1 18310295 989622 complement(1553118..1554680) 1 NC_003366.1 partially similar to gpu:AP001512_183 BH1596 gene product from Bacillus halodurans (305 aa); 34.7% identity in 248 aa overlap. N-terminal signal sequence was found by PSORT; von Willebrand factor A 1554680 989622 CPE1313 Clostridium perfringens str. 13 von Willebrand factor A NP_562229.1 1553118 R 195102 CDS NP_562230.1 18310296 989623 complement(1554845..1555810) 1 NC_003366.1 similar to prf:2313244A muramidase from Clostridium perfringens (321 aa); 100% identity in 321 aa overlap; cortical fragment-lytic enzyme; muramidase 1555810 989623 CPE1314 Clostridium perfringens str. 13 muramidase NP_562230.1 1554845 R 195102 CDS NP_562231.1 18310297 989624 complement(1555884..1556789) 1 NC_003366.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 1556789 ddl 989624 ddl Clostridium perfringens str. 13 D-alanine--D-alanine ligase NP_562231.1 1555884 R 195102 CDS NP_562232.1 18310298 989625 complement(1556909..1559374) 1 NC_003366.1 similar to gpu:AP001512_168 two-component sensor histidine kinase from Bacillus halodurans (594 aa); 29.2% identity in 363 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; two-component sensor histidine kinase 1559374 989625 CPE1316 Clostridium perfringens str. 13 two-component sensor histidine kinase NP_562232.1 1556909 R 195102 CDS NP_562233.1 18310299 989626 1559474..1560337 1 NC_003366.1 similar to pir:B71256 conserved hypothetical integral membrane protein TP0986 from Treponema pallidum (294 aa); 40% identity in 275 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; hypothetical protein 1560337 989626 CPE1317 Clostridium perfringens str. 13 hypothetical protein NP_562233.1 1559474 D 195102 CDS NP_562234.1 18310300 989627 complement(1560366..1560995) 1 NC_003366.1 similar to gpu:AP001512_285 endonuclease III (DNA repair) from Bacillus halodurans (218 aa); 49.8% identity in 203 aa overlap; endonuclease III 1560995 989627 CPE1318 Clostridium perfringens str. 13 endonuclease III NP_562234.1 1560366 R 195102 CDS NP_562235.1 18310301 989628 complement(1561007..1561711) 1 NC_003366.1 similar to prf:2403377A sn-glycerol-3-phosphate acyltransferase from Clostridium butyricum (234 aa); 57.1% identity in 233 aa overlap; acyltransferase 1561711 989628 CPE1319 Clostridium perfringens str. 13 acyltransferase NP_562235.1 1561007 R 195102 CDS NP_562236.1 18310302 989629 complement(1561749..1562741) 1 NC_003366.1 similar to gpu:AP001510_195 BH1020 gene product from Bacillus halodurans (391 aa); 32.7% identity in 297 aa overlap; hypothetical protein 1562741 989629 CPE1320 Clostridium perfringens str. 13 hypothetical protein NP_562236.1 1561749 R 195102 CDS NP_562237.1 18310303 989630 complement(1562886..1563395) 1 NC_003366.1 similar to sp:CYSE_HELPY SERINE ACETYLTRANSFERASE (EC 2.3.1.30) (SAT) from Helicobacter pylori (strain 26695) (171 aa); 69.1% identity in 162 aa overlap. 1 transmembrane region was found by PSORT; serine O-acetyltransferase 1563395 cysE 989630 cysE Clostridium perfringens str. 13 serine O-acetyltransferase NP_562237.1 1562886 R 195102 CDS NP_562238.1 18310304 989631 complement(1563414..1564316) 1 NC_003366.1 similar to gp:CST130879_2 o-acetylserine sulfhydrylase from Clostridium sticklandii (304 aa); 50.8% identity in 299 aa overlap; cysteine synthase; cysteine synthase A 1564316 cysK 989631 cysK Clostridium perfringens str. 13 cysteine synthase A NP_562238.1 1563414 R 195102 CDS NP_562239.1 18310305 989632 complement(1564655..1565926) 1 NC_003366.1 partially similar to gpu:AP001508_234 magnesium (Mg2+) transporter from Bacillus halodurans (452 aa); 29.6% identity in 226 aa overlap; hypothetical protein 1565926 989632 CPE1323 Clostridium perfringens str. 13 hypothetical protein NP_562239.1 1564655 R 195102 CDS NP_562240.1 18310306 989633 1566266..1567054 1 NC_003366.1 similar to gp:AF086736_1 amino acid-binding protein Abp from Streptococcus uberis (277 aa); 41.5% identity in 234 aa overlap; binding protein; amino acid ABC transporter 1567054 989633 CPE1324 Clostridium perfringens str. 13 amino acid ABC transporter NP_562240.1 1566266 D 195102 CDS NP_562241.1 18310307 989634 1567068..1567709 1 NC_003366.1 similar to pir:S77250 hypothetical protein from Synechocystis sp. (strain PCC 6803 (530 aa); 42.4% identity in 172 aa overlap. 3 transmembrane regions were found by PSORT.; permease; amino acid ABC transporter 1567709 989634 CPE1325 Clostridium perfringens str. 13 amino acid ABC transporter NP_562241.1 1567068 D 195102 CDS NP_562242.1 18310308 989635 1567721..1568413 1 NC_003366.1 similar to pir:F71849 amino acid ABC transporter, ATP-binding protei from Helicobacter pylori (strain J99) (248 aa); 43.7% identity in 229 aa overlap; ATP-binding protein; amino acid ABC transporter 1568413 989635 CPE1326 Clostridium perfringens str. 13 amino acid ABC transporter NP_562242.1 1567721 D 195102 CDS NP_562243.1 18310309 989636 complement(1568585..1569265) 1 NC_003366.1 no significant homology. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; hypothetical protein 1569265 989636 CPE1327 Clostridium perfringens str. 13 hypothetical protein NP_562243.1 1568585 R 195102 CDS NP_562244.1 18310310 989637 complement(1569338..1570219) 1 NC_003366.1 similar to YegS from E. coli; lipid kinase 1570219 989637 CPE1328 Clostridium perfringens str. 13 lipid kinase NP_562244.1 1569338 R 195102 CDS NP_562245.1 18310311 989638 1570535..1571056 1 NC_003366.1 similar to gpu:AP001511_199 phosphatidylserine synthase from Bacillus halodurans (179 aa); 38.2% identity in 170 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; CDP-diacylglycerol--serine O-phosphatidyltransferase 1571056 989638 CPE1329 Clostridium perfringens str. 13 CDP-diacylglycerol--serine O-phosphatidyltransferase NP_562245.1 1570535 D 195102 CDS NP_562246.1 18310312 989639 complement(1571103..1571453) 1 NC_003366.1 no significant homology.; hypothetical protein 1571453 989639 CPE1330 Clostridium perfringens str. 13 hypothetical protein NP_562246.1 1571103 R 195102 CDS NP_562247.1 18310313 989640 complement(1571475..1572011) 1 NC_003366.1 similar to sp:RUBY_DESVH RUBRERYTHRIN from Desulfovibrio vulgaris (191 aa); 45.1% identity in 175 aa overlap; rubrerythrin 1572011 rubY 989640 rubY Clostridium perfringens str. 13 rubrerythrin NP_562247.1 1571475 R 195102 CDS NP_562248.1 18310314 989641 complement(1572063..1573412) 1 NC_003366.1 similar to sp:SP5R_BACSU STAGE V SPORULATION PROTEIN R from Bacillus subtilis (468 aa); 40.6% identity in 443 aa overlap; stage V sporulation protein R 1573412 spoVR 989641 spoVR Clostridium perfringens str. 13 stage V sporulation protein R NP_562248.1 1572063 R 195102 CDS NP_562249.1 18310315 989642 complement(1573439..1574617) 1 NC_003366.1 similar to gpu:AP001510_206 BH1031 gene product from Bacillus halodurans (388 aa); 38.5% identity in 377 aa overlap; hypothetical protein 1574617 989642 CPE1333 Clostridium perfringens str. 13 hypothetical protein NP_562249.1 1573439 R 195102 CDS NP_562250.1 18310316 989643 complement(1574621..1576543) 1 NC_003366.1 similar to sp:PRKA_BACSU PRKA PROTEIN from Bacillus subtilis (631 aa); 39.2% identity in 637 aa overlap; serine protein kinase 1576543 prkA 989643 prkA Clostridium perfringens str. 13 serine protein kinase NP_562250.1 1574621 R 195102 CDS NP_562251.1 18310317 989644 complement(1576633..1578411) 1 NC_003366.1 similar to pir:F69901 DNA helicase recQ from Bacillus subtilis (591 aa); 38% identity in 587 aa overlap; ATP-dependent DNA helicase RecQ 1578411 recQ 989644 recQ Clostridium perfringens str. 13 ATP-dependent DNA helicase RecQ NP_562251.1 1576633 R 195102 CDS NP_562252.1 18310318 989645 complement(1578642..1579265) 1 NC_003366.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 1579265 thiE 989645 thiE Clostridium perfringens str. 13 thiamine-phosphate pyrophosphorylase NP_562252.1 1578642 R 195102 CDS NP_562253.1 18310319 989646 complement(1579258..1580055) 1 NC_003366.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 1580055 thiM 989646 thiM Clostridium perfringens str. 13 hydroxyethylthiazole kinase NP_562253.1 1579258 R 195102 CDS NP_562254.1 18310320 989647 complement(1580067..1580861) 1 NC_003366.1 similar to gpu:AP001512_22 phosphomethylpyrimidine kinase from Bacillus halodurans (270 aa); 45.8% identity in 262 aa overlap; phosphomethylpyrimidine kinase 1580861 thiD 989647 thiD Clostridium perfringens str. 13 phosphomethylpyrimidine kinase NP_562254.1 1580067 R 195102 CDS NP_562255.1 18310321 989648 1581169..1582008 1 NC_003366.1 partially similar to gpu:AE004275_8 conserved hypothetical protein from Vibrio cholerae (389 aa); 32.3% identity in 167 aa overlap; hypothetical protein 1582008 989648 CPE1339 Clostridium perfringens str. 13 hypothetical protein NP_562255.1 1581169 D 195102 CDS NP_562256.1 18310322 989649 complement(1582126..1583139) 1 NC_003366.1 similar to gpu:AP001514_233 transcriptional regulator (AraC/XylS family) from Bacillus halodurans (347 aa); 41.7% identity in 333 aa overlap; AraC/XylS family; LacI family transcriptional regulator 1583139 989649 CPE1340 Clostridium perfringens str. 13 LacI family transcriptional regulator NP_562256.1 1582126 R 195102 CDS NP_562257.1 18310323 989650 1583357..1584421 1 NC_003366.1 similar to gpu:AE004212_7 galactoside ABC transporter, periplasmic D-galactose/D-glucose-binding protein from Vibrio cholerae (324 aa); 60.4% identity in 303 aa overlap; D-galactose/D-glucose-binding protein; galactoside ABC transporter 1584421 989650 CPE1341 Clostridium perfringens str. 13 galactoside ABC transporter NP_562257.1 1583357 D 195102 CDS NP_562258.1 18310324 989651 1584496..1586043 1 NC_003366.1 with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein 1586043 989651 CPE1342 Clostridium perfringens str. 13 galactose/methyl galaxtoside transporter ATP-binding protein NP_562258.1 1584496 D 195102 CDS NP_562259.1 18310325 989652 1586015..1587043 1 NC_003366.1 ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane protein 1587043 mglC 989652 mglC Clostridium perfringens str. 13 beta-methylgalactoside transporter inner membrane protein NP_562259.1 1586015 D 195102 CDS NP_562260.1 18310326 989653 complement(1587084..1588106) 1 NC_003366.1 similar to gpu:AP001516_184 aldose 1-epimerase (EC 5.1.3.3) from Bacillus halodurans (348 aa); 38.8% identity in 335 aa overlap; aldose 1-epimerase 1588106 989653 CPE1344 Clostridium perfringens str. 13 aldose 1-epimerase NP_562260.1 1587084 R 195102 CDS NP_562261.1 18310327 989654 1588332..1589495 1 NC_003366.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 1589495 galK 989654 galK Clostridium perfringens str. 13 galactokinase NP_562261.1 1588332 D 195102 CDS NP_562262.1 18310328 989655 1589618..1591114 1 NC_003366.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 1591114 galT 989655 galT Clostridium perfringens str. 13 galactose-1-phosphate uridylyltransferase NP_562262.1 1589618 D 195102 CDS NP_562263.1 18310329 989656 complement(1591305..1592969) 1 NC_003366.1 similar to pir:B72341 uridine kinase-related protein from Thermotoga maritima (strain MSB8) (555 aa); 42.9% identity in 546 aa overlap; uridine kinase 1592969 989656 CPE1347 Clostridium perfringens str. 13 uridine kinase NP_562263.1 1591305 R 195102 CDS NP_562264.1 18310330 989657 1593091..1593789 1 NC_003366.1 similar to gpu:AP001511_121 BH1232 gene product from Bacillus halodurans (218 aa); 31.4% identity in 220 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1593789 989657 CPE1348 Clostridium perfringens str. 13 hypothetical protein NP_562264.1 1593091 D 195102 CDS NP_562265.1 18310331 989658 1593786..1594220 1 NC_003366.1 no significant homology. N-terminal signal sequence was found by PSORT; hypothetical protein 1594220 989658 CPE1349 Clostridium perfringens str. 13 hypothetical protein NP_562265.1 1593786 D 195102 CDS NP_562266.1 18310332 989659 1594317..1595183 1 NC_003366.1 similar to sp:ALF_MYCPN FRUCTOSE-BISPHOSPHATE ALDOLASE (EC 4.1.2.13) from Mycoplasma pneumoniae (strain ATCC 29342) (288 aa); 55.2% identity in 286 aa overlap; fructose-1,6-bisphosphate aldolase 1595183 alf2 989659 alf2 Clostridium perfringens str. 13 fructose-1,6-bisphosphate aldolase NP_562266.1 1594317 D 195102 CDS NP_562267.1 18310333 989660 complement(1595230..1596273) 1 NC_003366.1 C-terminal portion is similar to gp:CST130879_1 hypothetical protein from Clostridium sticklandii (95 aa); 38.7% identity in 62 aa overlap; hypothetical protein 1596273 989660 CPE1351 Clostridium perfringens str. 13 hypothetical protein NP_562267.1 1595230 R 195102 CDS NP_562268.1 18310334 989661 1596413..1596976 1 NC_003366.1 similar to sp:Y240_METJA HYPOTHETICAL PROTEIN MJ0240 from Methanococcus jannaschii (175 aa); 31.9% identity in 182 aa overlap; hypothetical protein 1596976 989661 CPE1352 Clostridium perfringens str. 13 hypothetical protein NP_562268.1 1596413 D 195102 CDS NP_562269.1 18310335 989662 complement(1597424..1597828) 1 NC_003366.1 no significant homology; hypothetical protein 1597828 989662 CPE1353 Clostridium perfringens str. 13 hypothetical protein NP_562269.1 1597424 R 195102 CDS NP_562270.1 18310336 989663 complement(1597967..1599616) 1 NC_003366.1 similar to gp:AF192766_1 enterotoxin from Bacillus cereus (419 aa); 23.7% identity in 375 aa overlap. N-terminal signal sequence was found by PSORT; enterotoxin 1599616 entB 989663 entB Clostridium perfringens str. 13 enterotoxin NP_562270.1 1597967 R 195102 CDS NP_562271.1 18310337 989664 complement(1599782..1600150) 1 NC_003366.1 no significant homology; hypothetical protein 1600150 989664 CPE1355 Clostridium perfringens str. 13 hypothetical protein NP_562271.1 1599782 R 195102 CDS NP_562272.1 18310338 989665 1600338..1600724 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 1600724 989665 CPE1356 Clostridium perfringens str. 13 hypothetical protein NP_562272.1 1600338 D 195102 CDS NP_562273.1 18310339 989666 complement(1600850..1601335) 1 NC_003366.1 similar to pir:D69849 transcription regulation homolog yjdI from Bacillus subtilis (159 aa); 56.9% identity in 160 aa overlap; ybaK/ebsC protein 1601335 989666 CPE1357 Clostridium perfringens str. 13 ybaK/ebsC protein NP_562273.1 1600850 R 195102 CDS NP_562274.1 18310340 989667 complement(1601922..1603226) 1 NC_003366.1 partially similar to pir:G71602 protein with DnaJ domain (RESA-like) PFB0925w from Plasmodium falciparum (657 aa); 26.1% identity in 157 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1603226 989667 CPE1358 Clostridium perfringens str. 13 hypothetical protein NP_562274.1 1601922 R 195102 CDS NP_562275.1 18310341 989668 complement(1603308..1603748) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 1603748 989668 CPE1359 Clostridium perfringens str. 13 hypothetical protein NP_562275.1 1603308 R 195102 CDS NP_562276.1 18310342 989669 complement(1603772..1604158) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 1604158 989669 CPE1360 Clostridium perfringens str. 13 hypothetical protein NP_562276.1 1603772 R 195102 CDS NP_562277.1 18310343 989670 complement(1604254..1605129) 1 NC_003366.1 partially similar to sp:YPIX_CLOPE HYPOTHETICAL 38.4 KDA PROTEIN (ORF10) from Clostridium perfringens plasmid pIP404 (342 aa); 60.4% identity in 144 aa overlap; hypothetical protein 1605129 989670 CPE1361 Clostridium perfringens str. 13 hypothetical protein NP_562277.1 1604254 R 195102 CDS NP_562278.1 18310344 989671 complement(1605491..1606051) 1 NC_003366.1 partially similar to pir:B69424 conserved hypothetical protein AF1395 from Archaeoglobus fulgidus (323 aa); 24.6% identity in 183 aa overlap; hypothetical protein 1606051 989671 CPE1362 Clostridium perfringens str. 13 hypothetical protein NP_562278.1 1605491 R 195102 CDS NP_562279.1 18310345 989672 complement(1606130..1607080) 1 NC_003366.1 member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 1607080 989672 CPE1363 Clostridium perfringens str. 13 ribonuclease Z NP_562279.1 1606130 R 195102 CDS NP_562280.1 18310346 989673 complement(1607193..1611608) 1 NC_003366.1 partially similar to gp:SSU40488_1 lacto-N-biosidase precursor from Streptomyces sp (639 aa); 26.6% identity in 482 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1611608 989673 CPE1364 Clostridium perfringens str. 13 hypothetical protein NP_562280.1 1607193 R 195102 CDS NP_562281.1 18310347 989674 1611842..1612468 1 NC_003366.1 similar to pir:E71247 hypothetical protein PH0236 from Pyrococcus horikoshii (205 aa); 27.6% identity in 163 aa overlap; hypothetical protein 1612468 989674 CPE1365 Clostridium perfringens str. 13 hypothetical protein NP_562281.1 1611842 D 195102 CDS NP_562282.1 18310348 989675 complement(1612521..1613273) 1 NC_003366.1 similar to pir:H64478 hypothetical protein MJ1433 from Methanococcus jannaschii (247 aa); 35.8% identity in 218 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1613273 989675 CPE1366 Clostridium perfringens str. 13 hypothetical protein NP_562282.1 1612521 R 195102 CDS NP_562283.1 18310349 989676 complement(1613365..1614513) 1 NC_003366.1 partially similar to pir:T37180 probable membrane protein from Streptomyces coelicolor (513 aa); 23.5% identity in 315 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; hypothetical protein 1614513 989676 CPE1367 Clostridium perfringens str. 13 hypothetical protein NP_562283.1 1613365 R 195102 CDS NP_562284.1 18310350 989677 complement(1614594..1619726) 1 NC_003366.1 similar to pir:H72357 hypothetical protein TM0599 from Thermotoga maritima (strain MSB8 (546 aa); 30.2% identity in 533 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1619726 989677 CPE1368 Clostridium perfringens str. 13 hypothetical protein NP_562284.1 1614594 R 195102 CDS NP_562285.1 18310351 989678 complement(1619964..1620467) 1 NC_003366.1 similar to pir:G81269 probable acetyltransferase Cj1715 from Campylobacter jejuni (strain NCTC 11168) (176 aa); 28.4% identity in 155 aa overlap; GNAT family acetyltransferase 1620467 989678 CPE1369 Clostridium perfringens str. 13 GNAT family acetyltransferase NP_562285.1 1619964 R 195102 CDS NP_562286.1 18310352 989679 1620776..1621555 1 NC_003366.1 similar to pir:F75515 probable histidinol phosphatase from Deinococcus radiodurans (strain R1) (260 aa); 24.3% identity in 226 aa overlap; histidinol phosphatase 1621555 hisB 989679 hisB Clostridium perfringens str. 13 histidinol phosphatase NP_562286.1 1620776 D 195102 CDS NP_562287.1 18310353 989680 1621905..1623218 1 NC_003366.1 similar to pir:C71376 probable sodium- and chloride- dependent transporter from Treponema pallidum (443 aa); 36.6% identity in 328 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; sodium- and chloride- dependent transporter 1623218 989680 CPE1371 Clostridium perfringens str. 13 sodium- and chloride- dependent transporter NP_562287.1 1621905 D 195102 CDS NP_562288.1 18310354 989681 1623511..1624206 1 NC_003366.1 similar to gpu:AP001510_5 BH0830 gene product from Bacillus halodurans (186 aa); 42.1% identity in 152 aa overlap. 6 transmembrane regions were found by PSORT.; proton-coupled thiamine transporter YuaJ 1624206 989681 CPE1372 Clostridium perfringens str. 13 proton-coupled thiamine transporter YuaJ NP_562288.1 1623511 D 195102 CDS NP_562289.1 18310355 989682 1624315..1625391 1 NC_003366.1 similar to sp:HIS8_METTH PROBABLE HISTIDINOL-PHOSPHATE AMINOTRANSFERASE (EC 2.6.1.9) (IMIDAZOLE ACETOL-PHOSPHATE TRANSAMINASE) from Methanobacterium thermoautotrophicum (strain Delta H) (373 aa); 29.9% identity in 351 aa overlap; aminotransferase 1625391 hisC 989682 hisC Clostridium perfringens str. 13 aminotransferase NP_562289.1 1624315 D 195102 CDS NP_562290.1 18310356 989683 complement(1625522..1626568) 1 NC_003366.1 similar to pir:S75587 H+/Ca2+ exchanging protein from Synechocystis sp. (strain PCC 6803) (372 aa); 48.6% identity in 346 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; calcium/proton exchanger 1626568 989683 CPE1374 Clostridium perfringens str. 13 calcium/proton exchanger NP_562290.1 1625522 R 195102 CDS NP_562291.1 18310357 989684 complement(1627010..1628305) 1 NC_003366.1 partially similar to gpu:HSJ131F15_2 dJ131F15.2 (phosphodiesterase I/nucleotide pyrophosphatase 1 (homologous to mouse Ly-41 antigen) (PC1, NPPS)) from Homo sapiens (845 aa); 32.1% identity in 218 aa overlap; phosphodiesterase/nucleotide pyrophosphatase 1628305 989684 CPE1375 Clostridium perfringens str. 13 phosphodiesterase/nucleotide pyrophosphatase NP_562291.1 1627010 R 195102 CDS NP_562292.1 18310358 989685 complement(1628362..1628697) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 1628697 989685 CPE1376 Clostridium perfringens str. 13 hypothetical protein NP_562292.1 1628362 R 195102 CDS NP_562293.1 18310359 989686 complement(1628835..1629248) 1 NC_003366.1 no significant homology; hypothetical protein 1629248 989686 CPE1377 Clostridium perfringens str. 13 hypothetical protein NP_562293.1 1628835 R 195102 CDS NP_562294.1 18310360 989687 complement(1629448..1630359) 1 NC_003366.1 similar to gpu:AE004347_10 conserved hypothetical protein from Vibrio cholerae (308 aa); 28.4% identity in 271 aa overlap. 8 transmembrane regions were found by PSORT.; hypothetical protein 1630359 989687 CPE1378 Clostridium perfringens str. 13 hypothetical protein NP_562294.1 1629448 R 195102 CDS NP_562295.1 18310361 989688 complement(1630393..1631184) 1 NC_003366.1 similar to pir:F69903 D-alanyl-D-alanine carboxypeptidase homolog yodJ from Bacillus subtilis (273 aa); 39.8% identity in 191 aa overlap. N-terminal signal sequence was found by PSORT; D-alanyl-D-alanine carboxypeptidase 1631184 989688 CPE1379 Clostridium perfringens str. 13 D-alanyl-D-alanine carboxypeptidase NP_562295.1 1630393 R 195102 CDS NP_562296.1 18310362 989689 complement(1631454..1631780) 1 NC_003366.1 no significant homology N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1631780 989689 CPE1380 Clostridium perfringens str. 13 hypothetical protein NP_562296.1 1631454 R 195102 CDS NP_562297.1 18310363 989691 1632265..1633206 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 1633206 989691 CPE1381 Clostridium perfringens str. 13 hypothetical protein NP_562297.1 1632265 D 195102 CDS NP_562298.1 18310364 989692 complement(1633244..1634113) 1 NC_003366.1 similar to pir:D83189 methionine aminopeptidase PA3657 from Pseudomonas aeruginosa (strain PAO1) (261 aa); 55.9% identity in 245 aa overlap; methionine aminopeptidase 1634113 map 989692 map Clostridium perfringens str. 13 methionine aminopeptidase NP_562298.1 1633244 R 195102 CDS NP_562299.1 18310365 989693 complement(1634461..1635057) 1 NC_003366.1 no significant homology; hypothetical protein 1635057 989693 CPE1383 Clostridium perfringens str. 13 hypothetical protein NP_562299.1 1634461 R 195102 CDS NP_562300.1 18310366 989694 1635159..1636082 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 1636082 989694 CPE1384 Clostridium perfringens str. 13 hypothetical protein NP_562300.1 1635159 D 195102 CDS NP_562301.1 18310367 989695 complement(1636222..1636791) 1 NC_003366.1 no significant homology; hypothetical protein 1636791 989695 CPE1385 Clostridium perfringens str. 13 hypothetical protein NP_562301.1 1636222 R 195102 CDS NP_562302.1 18310368 989696 complement(1636877..1637134) 1 NC_003366.1 no significant homology; hypothetical protein 1637134 989696 CPE1386 Clostridium perfringens str. 13 hypothetical protein NP_562302.1 1636877 R 195102 CDS NP_562303.1 18310369 989697 complement(1637156..1637371) 1 NC_003366.1 no significant homology 2 transmembrane regions were found by PSORT.; hypothetical protein 1637371 989697 CPE1387 Clostridium perfringens str. 13 hypothetical protein NP_562303.1 1637156 R 195102 CDS NP_562304.1 18310370 989698 complement(1637407..1637889) 1 NC_003366.1 no significant homology 2 transmembrane regions were found by PSORT.; hypothetical protein 1637889 989698 CPE1388 Clostridium perfringens str. 13 hypothetical protein NP_562304.1 1637407 R 195102 CDS NP_562305.1 18310371 989699 complement(1638106..1638699) 1 NC_003366.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1638699 engB 989699 engB Clostridium perfringens str. 13 ribosome biogenesis GTP-binding protein YsxC NP_562305.1 1638106 R 195102 CDS NP_562306.1 18310372 989700 complement(1638699..1641029) 1 NC_003366.1 similar to sp:LON_BACBR ATP-DEPENDENT PROTEASE LA (EC 3.4.21.53 from Bacillus brevis (779 aa); 51% identity in 770 aa overlap; ATP-dependent protease La 1641029 lonA 989700 lonA Clostridium perfringens str. 13 ATP-dependent protease La NP_562306.1 1638699 R 195102 CDS NP_562307.1 18310373 989701 complement(1641151..1642863) 1 NC_003366.1 similar to sp:LON2_BACSU ATP-DEPENDENT PROTEASE LA HOMOLOG (EC 3.4.21.-) from Bacillus subtilis (552 aa); 58.2% identity in 507 aa overlap. N-terminal signal sequence was found by PSORT; Lon-like ATP-dependent protease 1642863 lonB 989701 lonB Clostridium perfringens str. 13 Lon-like ATP-dependent protease NP_562307.1 1641151 R 195102 CDS NP_562308.1 18310374 989702 complement(1642974..1644281) 1 NC_003366.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1644281 clpX 989702 clpX Clostridium perfringens str. 13 ATP-dependent protease ATP-binding subunit ClpX NP_562308.1 1642974 R 195102 CDS NP_562309.1 18310375 989703 complement(1644321..1644905) 1 NC_003366.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1644905 clpP 989703 clpP Clostridium perfringens str. 13 ATP-dependent Clp protease proteolytic subunit NP_562309.1 1644321 R 195102 CDS NP_562310.1 18310376 989704 complement(1645096..1646382) 1 NC_003366.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1646382 tig 989704 tig Clostridium perfringens str. 13 trigger factor NP_562310.1 1645096 R 195102 CDS NP_562311.1 18310377 989705 complement(1646480..1647298) 1 NC_003366.1 similar to sp:YD11_METJA HYPOTHETICAL PROTEIN MJ1311 from Methanococcus jannaschii (293 aa); 26% identity in 262 aa overlap; hypothetical protein 1647298 989705 CPE1395 Clostridium perfringens str. 13 hypothetical protein NP_562311.1 1646480 R 195102 CDS NP_562312.1 18310378 989706 1647504..1649090 1 NC_003366.1 similar to gpu:AP001515_118 ATP-dependent RNA helicase from Bacillus halodurans] (539 aa); 46.8% identity in 524 aa overlap; ATP-dependent RNA helicase 1649090 989706 CPE1396 Clostridium perfringens str. 13 ATP-dependent RNA helicase NP_562312.1 1647504 D 195102 CDS NP_562313.1 18310379 989707 complement(1649129..1649392) 1 NC_003366.1 no significant homology. S.D. unclear; hypothetical protein 1649392 989707 CPE1397 Clostridium perfringens str. 13 hypothetical protein NP_562313.1 1649129 R 195102 CDS NP_562314.1 18310380 989708 1649585..1650292 1 NC_003366.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1650292 deoD 989708 deoD Clostridium perfringens str. 13 purine nucleoside phosphorylase NP_562314.1 1649585 D 195102 CDS NP_562315.1 18310381 989709 complement(1650343..1651626) 1 NC_003366.1 partially similar to pir:A70030 hypothetical protein yvbJ from Bacillus subtilis (605 aa); 22.1% identity in 321 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1651626 989709 CPE1399 Clostridium perfringens str. 13 hypothetical protein NP_562315.1 1650343 R 195102 CDS NP_562316.1 18310382 989710 complement(1651637..1651981) 1 NC_003366.1 no significant homology; hypothetical protein 1651981 989710 CPE1400 Clostridium perfringens str. 13 hypothetical protein NP_562316.1 1651637 R 195102 CDS NP_562317.1 18310383 989711 complement(1652165..1653073) 1 NC_003366.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1653073 989711 CPE1401 Clostridium perfringens str. 13 DNA polymerase III subunit epsilon NP_562317.1 1652165 R 195102 CDS NP_562318.1 18310384 989712 complement(1653320..1656241) 1 NC_003366.1 similar to gpu:AP000419_7 zinc metalloprotease (insulinase) from Arabidopsis thaliana (1052 aa); 36.7% identity in 960 aa overlap; insulinase; zinc metalloprotease 1656241 989712 CPE1402 Clostridium perfringens str. 13 zinc metalloprotease NP_562318.1 1653320 R 195102 CDS NP_562319.1 18310385 989713 complement(1656616..1656885) 1 NC_003366.1 no significant homology N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1656885 989713 CPE1403 Clostridium perfringens str. 13 hypothetical protein NP_562319.1 1656616 R 195102 CDS NP_562320.1 18310386 989714 1657055..1658206 1 NC_003366.1 similar to gp:BSU58864_1 Bacillus subtilis methylase homolog (cspR) gene, complete cds from Bacillus subtilis (174 aa); 31.6% identity in 117 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1658206 989714 CPE1404 Clostridium perfringens str. 13 hypothetical protein NP_562320.1 1657055 D 195102 CDS NP_562321.1 18310387 989715 complement(1658258..1658983) 1 NC_003366.1 similar to pir:G81691 N-acetylmuramoyl-L-alanine amidase, probable TC0539 from Chlamydia muridarum (strain Nigg) (268 aa); 29.1% identity in 172 aa overlap. N-terminal signal sequence was found by PSORT; N-acetylmuramoyl-L-alanine amidase 1658983 989715 CPE1405 Clostridium perfringens str. 13 N-acetylmuramoyl-L-alanine amidase NP_562321.1 1658258 R 195102 CDS NP_562322.1 18310388 989716 1659141..1659347 1 NC_003366.1 hypothetical protein 1659347 989716 CPE1406 Clostridium perfringens str. 13 hypothetical protein NP_562322.1 1659141 D 195102 CDS NP_562323.1 18310389 989717 1659365..1659718 1 NC_003366.1 similar to gpu:AF225976_1 flavoredoxin from Desulfovibrio giga (194 aa); 31.7% identity in 145 aa overlap; hypothetical protein 1659718 989717 CPE1407 Clostridium perfringens str. 13 hypothetical protein NP_562323.1 1659365 D 195102 CDS NP_562324.1 18310390 989718 complement(1659846..1661417) 1 NC_003366.1 similar to gpu:AE004383_5 conserved hypothetical protein from Vibrio cholerae (468 aa); 28.9% identity in 353 aa overlap. 11 transmembrane regions were found by PSORT.; hypothetical protein 1661417 989718 CPE1408 Clostridium perfringens str. 13 hypothetical protein NP_562324.1 1659846 R 195102 CDS NP_562325.1 18310391 989719 1661680..1662990 1 NC_003366.1 similar to pir:E72398 hypothetical protein TM0244 from Thermotoga maritima (strain MSB8) (451 aa); 41.4% identity in 430 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1662990 989719 CPE1409 Clostridium perfringens str. 13 hypothetical protein NP_562325.1 1661680 D 195102 CDS NP_562326.1 18310392 989720 1663004..1663984 1 NC_003366.1 similar to pir:F72398 Na-translocating NADH-quinone reductase, Nqr2 subunit from Thermotoga maritima (strain MSB8) (318 aa); 39.7% identity in 300 aa overlap. 6 transmembrane regions were found by PSORT.; Na-translocating NADH-quinone reductase Nqr2 subunit 1663984 989720 CPE1410 Clostridium perfringens str. 13 Na-translocating NADH-quinone reductase Nqr2 subunit NP_562326.1 1663004 D 195102 CDS NP_562327.1 18310393 989721 complement(1664307..1664564) 1 NC_003366.1 similar to pir:E83269 hypothetical protein PA3012 from Pseudomonas aeruginosa (strain PAO1) (124 aa); 58.5% identity in 53 aa overlap; hypothetical protein 1664564 989721 CPE1411 Clostridium perfringens str. 13 hypothetical protein NP_562327.1 1664307 R 195102 CDS NP_562328.1 18310394 989722 complement(1664692..1665849) 1 NC_003366.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 1665849 thiI 989722 thiI Clostridium perfringens str. 13 thiamine biosynthesis protein ThiI NP_562328.1 1664692 R 195102 CDS NP_562329.1 18310395 989723 complement(1665846..1666991) 1 NC_003366.1 similar to pir:F72223 iron-sulfur cofactor synthesis protein TM1692 from Thermotoga maritima (strain MSB8) (384 aa); 42.6% identity in 376 aa overlap; class V aminotransferase 1666991 nifS 989723 nifS Clostridium perfringens str. 13 class V aminotransferase NP_562329.1 1665846 R 195102 CDS NP_562330.1 18310396 989724 complement(1667165..1667602) 1 NC_003366.1 similar to gpu:AP001511_103 chorismate mutase from Bacillus halodurans (147 aa); 36% identity in 136 aa overlap; hypothetical protein 1667602 pheB 989724 pheB Clostridium perfringens str. 13 hypothetical protein NP_562330.1 1667165 R 195102 CDS NP_562331.1 18310397 989725 complement(1667981..1670560) 1 NC_003366.1 similar to gpu:AP001509_227 BH0789 gene product from Bacillus halodurans (777 aa); 41.4% identity in 684 aa overlap; hypothetical protein 1670560 989725 CPE1415 Clostridium perfringens str. 13 hypothetical protein NP_562331.1 1667981 R 195102 CDS NP_562332.1 18310398 989726 complement(1670669..1671250) 1 NC_003366.1 similar to sp:YP20_BACLI HYPOTHETICAL P20 PROTEIN from Bacillus licheniformis (178 aa); 38.7% identity in 111 aa overlap; hypothetical protein 1671250 989726 CPE1416 Clostridium perfringens str. 13 hypothetical protein NP_562332.1 1670669 R 195102 CDS NP_562333.1 18310399 989727 complement(1671289..1672128) 1 NC_003366.1 similar to N-terminal of pir:B72397 5-methyltetrahydrofolate S-homocysteine methyltransferase from Thermotoga maritima (strain MSB8) (768 aa); 36.6% identity in 268 aa overlap; hypothetical protein 1672128 989727 CPE1417 Clostridium perfringens str. 13 hypothetical protein NP_562333.1 1671289 R 195102 CDS NP_562334.1 18310400 989728 1672370..1673098 1 NC_003366.1 similar to pir:G72223 hypothetical protein TM1693 from Thermotoga maritima (strain MSB8) (247 aa); 42.3% identity in 175 aa overlap; hypothetical protein 1673098 989728 CPE1418 Clostridium perfringens str. 13 hypothetical protein NP_562334.1 1672370 D 195102 CDS NP_562335.1 18310401 989729 complement(1673142..1674530) 1 NC_003366.1 similar to pir:H64099 probable amino acid transport protein HI0883, sodium-dependent from Haemophilus influenzae (strain Rd KW20) (456 aa); 58.2% identity in 445 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; amino acid ABC transporter 1674530 989729 CPE1419 Clostridium perfringens str. 13 amino acid ABC transporter NP_562335.1 1673142 R 195102 CDS NP_562336.1 18310402 989730 complement(1674837..1675493) 1 NC_003366.1 partially similar to pir:C70485 poly A polymerase from Aquifex aeolicus (512 aa); 35.2% identity in 182 aa overlap; poly A polymerase 1675493 989730 CPE1420 Clostridium perfringens str. 13 poly A polymerase NP_562336.1 1674837 R 195102 CDS NP_562337.1 18310403 989731 1675816..1676568 1 NC_003366.1 partially similar to gp:BAMALAMYA_3 membrane protein from Bacillus acidopullulyticus (183 aa); 26.4% identity in 239 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 1676568 989731 CPE1421 Clostridium perfringens str. 13 hypothetical protein NP_562337.1 1675816 D 195102 CDS NP_562338.1 18310404 989732 1676773..1677750 1 NC_003366.1 similar to sp:YD33_MYCTU HYPOTHETICAL 33.9 KDA PROTEIN RV1333 from Mycobacterium tuberculosis (strain H37RV) (344 aa); 39.2% identity in 316 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1677750 989732 CPE1422 Clostridium perfringens str. 13 hypothetical protein NP_562338.1 1676773 D 195102 CDS NP_562339.1 18310405 989733 1677991..1678173 1 NC_003366.1 similar to pir:JN0083 small acid-soluble spore protein C2 from Clostridium perfringens (60 aa); 100% identity in 60 aa overlap; small acid-soluble spore protein C2 1678173 sas2 989733 sas2 Clostridium perfringens str. 13 small acid-soluble spore protein C2 NP_562339.1 1677991 D 195102 CDS NP_562340.1 18310406 989734 complement(1678221..1678661) 1 NC_003366.1 similar to pir:S74403 hypothetical protein slr0491 from Synechocystis sp. (strain PCC 6803) (144 aa); 29.2% identity in 137 aa overlap; hypothetical protein 1678661 989734 CPE1424 Clostridium perfringens str. 13 hypothetical protein NP_562340.1 1678221 R 195102 CDS NP_562341.1 18310407 989735 complement(1678661..1679308) 1 NC_003366.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline; pyrrolidone-carboxylate peptidase 1679308 989735 CPE1425 Clostridium perfringens str. 13 pyrrolidone-carboxylate peptidase NP_562341.1 1678661 R 195102 CDS NP_562342.1 18310408 989736 complement(1679338..1680267) 1 NC_003366.1 similar to pir:A81402 probable integral membrane protein Cj0553 from Campylobacter jejuni (strain NCTC 11168) (317 aa); 37.2% identity in 301 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein 1680267 989736 CPE1426 Clostridium perfringens str. 13 hypothetical protein NP_562342.1 1679338 R 195102 CDS NP_562343.1 18310409 989737 complement(1680280..1680960) 1 NC_003366.1 similar to pir:H81401 hydrophobic protein Cj0552 from Campylobacter jejuni (strain NCTC 11168) (230 aa); 39.7% identity in 204 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 1680960 989737 CPE1427 Clostridium perfringens str. 13 hypothetical protein NP_562343.1 1680280 R 195102 CDS NP_562344.1 18310410 989738 complement(1681198..1683798) 1 NC_003366.1 similar to pir:S76197 endopeptidase Clp ATP-binding chain B1 from Synechocystis sp. (strain PCC 6803) (867 aa); 55.8% identity in 577 aa overlap; clpB protein 1683798 clpB 989738 clpB Clostridium perfringens str. 13 clpB protein NP_562344.1 1681198 R 195102 CDS NP_562345.1 18310411 989739 1684114..1685655 1 NC_003366.1 similar to gp:AP001516_278 GTP pyrophosphokinase from Bacillus halodurans (211 aa); 30.2% identity in 139 aa overlap; hypothetical protein 1685655 989739 CPE1429 Clostridium perfringens str. 13 hypothetical protein NP_562345.1 1684114 D 195102 CDS NP_562346.1 18310412 989740 1685736..1687166 1 NC_003366.1 similar to sp:CLS_CLOPE CARDIOLIPIN SYNTHETASE (EC 2.7.8.-) (CARDIOLIPIN SYNTHASE) (CL SYNTHASE) from Clostridium perfringens (476 aa); 99.8% identity in 454 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; cardiolipin synthase 1687166 clsD 989740 clsD Clostridium perfringens str. 13 cardiolipin synthase NP_562346.1 1685736 D 195102 CDS NP_562347.1 18310413 989741 complement(1687324..1688949) 1 NC_003366.1 similar to pir:T43862 FAD flavoprotein oxidase from Clostridium perfringens (541 aa); 93% identity in 541 aa overlap. N-terminal signal sequence was found by PSORT; FAD flavoprotein oxidase 1688949 989741 CPE1431 Clostridium perfringens str. 13 FAD flavoprotein oxidase NP_562347.1 1687324 R 195102 CDS NP_562348.1 18310414 989742 complement(1689150..1690433) 1 NC_003366.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1690433 hemL 989742 hemL Clostridium perfringens str. 13 glutamate-1-semialdehyde aminotransferase NP_562348.1 1689150 R 195102 CDS NP_562349.1 18310415 989743 complement(1690491..1691456) 1 NC_003366.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1691456 hemB 989743 hemB Clostridium perfringens str. 13 delta-aminolevulinic acid dehydratase NP_562349.1 1690491 R 195102 CDS NP_562350.1 18310416 989744 complement(1691513..1692991) 1 NC_003366.1 similar to >pir:T43859 uroporphyrinogen III methylas from Clostridium perfringens (492 aa); 96.3% identity in 492 aa overlap; uroporphyrinogen-III methyltransferase/synthase 1692991 hemX 989744 hemX Clostridium perfringens str. 13 uroporphyrinogen-III methyltransferase/synthase NP_562350.1 1691513 R 195102 CDS NP_562351.1 18310417 989745 complement(1693000..1693875) 1 NC_003366.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1693875 hemC 989745 hemC Clostridium perfringens str. 13 porphobilinogen deaminase NP_562351.1 1693000 R 195102 CDS NP_562352.1 18310418 989746 complement(1693933..1694595) 1 NC_003366.1 catalyzes the formation of siroheme from precorrin-2; precorrin-2 dehydrogenase 1694595 989746 CPE1436 Clostridium perfringens str. 13 precorrin-2 dehydrogenase NP_562352.1 1693933 R 195102 CDS NP_562353.1 18310419 989747 complement(1694559..1695761) 1 NC_003366.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1695761 hemA 989747 hemA Clostridium perfringens str. 13 glutamyl-tRNA reductase NP_562353.1 1694559 R 195102 CDS NP_562354.1 18310420 989748 complement(1696177..1697157) 1 NC_003366.1 similar to sp:ASRC_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT C (EC 1.8.1.-) from Salmonella typhimurium (337 aa); 43.4% identity in 318 aa overlap; anaerobic sulfite reductase subunit C 1697157 asrC 989748 asrC Clostridium perfringens str. 13 anaerobic sulfite reductase subunit C NP_562354.1 1696177 R 195102 CDS NP_562355.1 18310421 989749 complement(1697171..1697962) 1 NC_003366.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 1697962 asrB 989749 asrB Clostridium perfringens str. 13 anaerobic sulfite reductase subunit B NP_562355.1 1697171 R 195102 CDS NP_562356.1 18310422 989750 complement(1697955..1698971) 1 NC_003366.1 similar to sp:ASRA_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT A (ANAEROBIC SULFITE REDUCTASE IRON-SULFUR SUBUNIT) from Salmonella typhimurium (347 aa); 45.3% identity in 333 aa overlap; anaerobic sulfite reductase subunit A 1698971 asrA 989750 asrA Clostridium perfringens str. 13 anaerobic sulfite reductase subunit A NP_562356.1 1697955 R 195102 CDS NP_562357.1 18310423 989751 complement(1699211..1699903) 1 NC_003366.1 similar to pir:T36556 probable transcription regulator from Streptomyces coelicolor (224 aa); 22.9% identity in 192 aa overlap; Crp/Fnr family; Crp/Fnr family transcriptional regulator 1699903 989751 CPE1441 Clostridium perfringens str. 13 Crp/Fnr family transcriptional regulator NP_562357.1 1699211 R 195102 CDS NP_562358.1 18310424 989752 complement(1700121..1700918) 1 NC_003366.1 similar to pir:S39703 nitrite transport protein homolog ywcJ from Bacillus subtilis (256 aa); 37.9% identity in 214 aa overlap. 7 transmembrane regions were found by PSORT.; nitrite transporter 1700918 nirC 989752 nirC Clostridium perfringens str. 13 nitrite transporter NP_562358.1 1700121 R 195102 CDS NP_562359.1 18310425 989753 complement(1701126..1701746) 1 NC_003366.1 similar to no homology from (410 aa); 28.3% identity in 127 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 1701746 989753 CPE1443 Clostridium perfringens str. 13 hypothetical protein NP_562359.1 1701126 R 195102 CDS NP_562360.1 18310426 989754 complement(1701724..1702005) 1 NC_003366.1 similar to pir:A69742 conserved hypothetical protein yazA from Bacillus subtilis (99 aa); 51.6% identity in 91 aa overlap. S.D. unclear; GIY-YIG domain-containing protein 1702005 989754 CPE1444 Clostridium perfringens str. 13 GIY-YIG domain-containing protein NP_562360.1 1701724 R 195102 CDS NP_562361.1 18310427 989755 1702268..1704328 1 NC_003366.1 similar to gp:AB042614_1 beta-1,4-xylosidase with transcriptional regulator of AraC/XylS family from Aeromonas caviae (745 aa); 26.2% identity in 237 aa overlap; AraC/XylS family; AraC family transcriptional regulator 1704328 989755 CPE1445 Clostridium perfringens str. 13 AraC family transcriptional regulator NP_562361.1 1702268 D 195102 CDS NP_562362.1 18310428 989756 complement(1704792..1706057) 1 NC_003366.1 similar to prf:2105286A transcriptional activator from Lactobacillus sp (424 aa); 22.4% identity in 398 aa overlap; hypothetical protein 1706057 989756 CPE1446 Clostridium perfringens str. 13 hypothetical protein NP_562362.1 1704792 R 195102 CDS NP_562363.1 18310429 989757 complement(1706074..1706826) 1 NC_003366.1 partially similar to prf:1616280A neutral protease transcriptional activator from Bacillus stearothermophilus (406 aa); 22.2% identity in 144 aa overlap. ATA start; hypothetical protein 1706826 989757 CPE1447 Clostridium perfringens str. 13 hypothetical protein NP_562363.1 1706074 R 195102 CDS NP_562364.1 18310430 989758 complement(1706848..1707375) 1 NC_003366.1 partially similar to pir:JC6007 transcription activator plcR from Bacillus thuringiensis (285 aa); 27.8% identity in 144 aa overlap; transcriptional regulator 1707375 989758 CPE1448 Clostridium perfringens str. 13 transcriptional regulator NP_562364.1 1706848 R 195102 CDS NP_562365.1 18310431 989759 complement(1707673..1707834) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 1707834 989759 CPE1449 Clostridium perfringens str. 13 hypothetical protein NP_562365.1 1707673 R 195102 CDS NP_562366.1 18310432 989760 complement(1707913..1708542) 1 NC_003366.1 similar to pir:B72269 ribonuclease H-related protein from Thermotoga maritima (strain MSB8) (223 aa); 37.1% identity in 205 aa overlap; ribonuclease H-like protein 1708542 989760 CPE1450 Clostridium perfringens str. 13 ribonuclease H-like protein NP_562366.1 1707913 R 195102 CDS NP_562367.1 18310433 989761 complement(1708558..1709529) 1 NC_003366.1 similar to pir:G69161 conserved hypothetical protein MTH471 from Methanobacterium thermoautotrophicum (strain Delta H) (138 aa); 24.8% identity in 105 aa overlap. 3 transmembrane regions were found by PSORT.; hypothetical protein 1709529 989761 CPE1451 Clostridium perfringens str. 13 hypothetical protein NP_562367.1 1708558 R 195102 CDS NP_562368.1 18310434 989762 complement(1709642..1710670) 1 NC_003366.1 partially similar to sp:YQGP_BACSU HYPOTHETICAL 56.4 KDA PROTEIN IN SODA-COMGA INTERGENIC REGION. from Bacillus subtilis (507 aa); 43% identity in 151 aa overlap. 5 transmembrane regions were found by PSORT.; rhomboid family protein 1710670 989762 CPE1452 Clostridium perfringens str. 13 rhomboid family protein NP_562368.1 1709642 R 195102 CDS NP_562369.1 18310435 989763 complement(1710688..1712487) 1 NC_003366.1 similar to pir:T44581 thimet oligopeptidase (EC 3.4.24.15) from Bacillus licheniformis (628 aa); 46.4% identity in 603 aa overlap; oligoendopeptidase F 1712487 pepF 989763 pepF Clostridium perfringens str. 13 oligoendopeptidase F NP_562369.1 1710688 R 195102 CDS NP_562370.1 18310436 989764 complement(1712508..1712906) 1 NC_003366.1 no significant homology; hypothetical protein 1712906 989764 CPE1454 Clostridium perfringens str. 13 hypothetical protein NP_562370.1 1712508 R 195102 CDS NP_562371.1 18310437 989765 1713075..1713410 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 1713410 989765 CPE1455 Clostridium perfringens str. 13 hypothetical protein NP_562371.1 1713075 D 195102 CDS NP_562372.1 18310438 989766 1713483..1714151 1 NC_003366.1 similar to pir:E71375 probable ABC transporter, ATP-binding protein from Treponema pallidum (238 aa); 37.3% identity in 212 aa overlap; ATP-binding protein; ABC transporter 1714151 989766 CPE1456 Clostridium perfringens str. 13 ABC transporter NP_562372.1 1713483 D 195102 CDS NP_562373.1 18310439 989767 1714170..1714979 1 NC_003366.1 similar to pir:F71375 probable ABC transporter, permease from [Treponema pallidum (266 aa); 41.7% identity in 242 aa overlap. 7 transmembrane regions were found by PSORT.; permease; ABC transporter 1714979 989767 CPE1457 Clostridium perfringens str. 13 ABC transporter NP_562373.1 1714170 D 195102 CDS NP_562374.1 18310440 989768 complement(1714974..1715153) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 1715153 989768 CPE1458 Clostridium perfringens str. 13 hypothetical protein NP_562374.1 1714974 R 195102 CDS NP_562375.1 18310441 989769 complement(1715138..1716529) 1 NC_003366.1 similar to pir:H72331 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (464 aa); 26.3% identity in 411 aa overlap. 10 transmembrane regions were found by PSORT.; hypothetical protein 1716529 989769 CPE1459 Clostridium perfringens str. 13 hypothetical protein NP_562375.1 1715138 R 195102 CDS NP_562376.1 18310442 989770 complement(1716808..1718226) 1 NC_003366.1 no significant homology; hypothetical protein 1718226 989770 CPE1460 Clostridium perfringens str. 13 hypothetical protein NP_562376.1 1716808 R 195102 CDS NP_562377.1 18310443 989771 complement(1718309..1719232) 1 NC_003366.1 no significant homology; hypothetical protein 1719232 989771 CPE1461 Clostridium perfringens str. 13 hypothetical protein NP_562377.1 1718309 R 195102 CDS NP_562378.1 18310444 989772 complement(1719499..1719909) 1 NC_003366.1 similar to sp:FUR_CAMJE FERRIC UPTAKE REGULATION PROTEIN (FERRIC UPTAKE REGULATOR) from Campylobacter jejuni (strain NCTC 11168) (157 aa); 33.8% identity in 133 aa overlap; FUR family transcriptional regulator 1719909 furR 989772 furR Clostridium perfringens str. 13 FUR family transcriptional regulator NP_562378.1 1719499 R 195102 CDS NP_562379.1 18310445 989773 complement(1720201..1721028) 1 NC_003366.1 similar to sp:PTND_ECOLI PTS SYSTEM, MANNOSE-SPECIFIC IID COMPONENT (EIID-MAN) (MANNOSE- PERMEASE IID COMPONENT) (PHOSPHOTRANSFERASE ENZYME II, D COMPONENT) (EII-M-MAN) from Escherichia coli (286 aa); 34.8% identity in 247 aa overlap. 4 transmembrane regions were found by PSORT.; mannose-specific IID component; PTS system protein 1721028 989773 CPE1463 Clostridium perfringens str. 13 PTS system protein NP_562379.1 1720201 R 195102 CDS NP_562380.1 18310446 989774 complement(1721028..1721834) 1 NC_003366.1 similar to gp:VFU65015_2 PTS permease for mannose subunit IIPMan from Vibrio furnissii (258 aa); 30.3% identity in 221 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; mannose-specific IIC component; PTS system protein 1721834 989774 CPE1464 Clostridium perfringens str. 13 PTS system protein NP_562380.1 1721028 R 195102 CDS NP_562381.1 18310447 989775 complement(1721989..1722486) 1 NC_003366.1 similar to pir:WQECM3 phosphotransferase system enzyme II (EC 2.7.1.69), mannose-specific, factor IIAB from Escherichia coli (323 aa); 30.2% identity in 139 aa overlap; mannose-specific IIAB component; PTS system protein 1722486 989775 CPE1465 Clostridium perfringens str. 13 PTS system protein NP_562381.1 1721989 R 195102 CDS NP_562382.1 18310448 989776 complement(1722641..1723060) 1 NC_003366.1 partially similar to gp:AF130465_1 mannose-specific phosphotransferase system component IIAB from Streptococcus salivarius (330 aa); 31.6% identity in 95 aa overlap. 1 transmembrane region was found by PSORT; mannose-specific IIAB component; PTS system protein 1723060 989776 CPE1466 Clostridium perfringens str. 13 PTS system protein NP_562382.1 1722641 R 195102 CDS NP_562383.1 18310449 989777 1723470..1724672 1 NC_003366.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 1724672 pfk 989777 pfk Clostridium perfringens str. 13 6-phosphofructokinase NP_562383.1 1723470 D 195102 CDS NP_562384.1 18310450 989778 complement(1724731..1725096) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 1725096 989778 CPE1468 Clostridium perfringens str. 13 hypothetical protein NP_562384.1 1724731 R 195102 CDS NP_562385.1 18310451 989779 complement(1725353..1726639) 1 NC_003366.1 similar to pir:T35528 probable aminotransferase from Streptomyces coelicolor (476 aa); 32.1% identity in 414 aa overlap. 1 transmembrane region was found by PSORT; class V aminotransferase 1726639 989779 CPE1469 Clostridium perfringens str. 13 class V aminotransferase NP_562385.1 1725353 R 195102 CDS NP_562386.1 18310452 989780 1726809..1728740 1 NC_003366.1 similar to gpu:AP001508_273 ABC transporter (ATP-binding protein) from Bacillus halodurans (642 aa); 37.9% identity in 634 aa overlap; ATP-binding protein; prbable ABC transporter 1728740 989780 CPE1470 Clostridium perfringens str. 13 prbable ABC transporter NP_562386.1 1726809 D 195102 CDS NP_562387.1 18310453 989781 complement(1728905..1729369) 1 NC_003366.1 similar to pir:H69888 deoxyuridine 5'-triphosphate pyrophosphatase homolog yncF from Bacillus subtili (144 aa); 48.1% identity in 154 aa overlap; deoxyuridine 5'-triphosphate nucleotidohydrolase 1729369 dut 989781 dut Clostridium perfringens str. 13 deoxyuridine 5'-triphosphate nucleotidohydrolase NP_562387.1 1728905 R 195102 CDS NP_562388.1 18310454 989782 complement(1729504..1730094) 1 NC_003366.1 no significant homology; hypothetical protein 1730094 989782 CPE1472 Clostridium perfringens str. 13 hypothetical protein NP_562388.1 1729504 R 195102 CDS NP_562389.1 18310455 989783 complement(1730180..1730734) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 1730734 989783 CPE1473 Clostridium perfringens str. 13 hypothetical protein NP_562389.1 1730180 R 195102 CDS NP_562390.1 18310456 989784 1730973..1731620 1 NC_003366.1 similar to pir:H75342 probable hemolysin Deinococcus radiodurans (strain R1) from Deinococcus radiodurans (strain R1) (219 aa); 36.3% identity in 212 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hemolysin III 1731620 hlyC 989784 hlyC Clostridium perfringens str. 13 hemolysin III NP_562390.1 1730973 D 195102 CDS NP_562391.1 18310457 989785 complement(1731671..1732555) 1 NC_003366.1 similar to sp:YEIE_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN LYSP-NFO INTERGENIC REGION from Escherichia coli (293 aa); 34.7% identity in 285 aa overlap. 1 transmembrane region was found by PSORT; LysR-family; LysR family transcriptional regulator 1732555 989785 CPE1475 Clostridium perfringens str. 13 LysR family transcriptional regulator NP_562391.1 1731671 R 195102 CDS NP_562392.1 18310458 989786 complement(1732567..1732851) 1 NC_003366.1 no significant homology N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1732851 989786 CPE1476 Clostridium perfringens str. 13 hypothetical protein NP_562392.1 1732567 R 195102 CDS NP_562393.1 18310459 989787 1733027..1733743 1 NC_003366.1 similar to pir:F69829 endo-1,4-beta-xylanase homolog yheN from Bacillus subtilis (282 aa); 35.4% identity in 198 aa overlap. N-terminal signal sequence was found by PSORT; polysaccharide deacetylase 1733743 989787 CPE1477 Clostridium perfringens str. 13 polysaccharide deacetylase NP_562393.1 1733027 D 195102 CDS NP_562394.1 18310460 989788 complement(1733760..1734296) 1 NC_003366.1 no significant homology; hypothetical protein 1734296 989788 CPE1478 Clostridium perfringens str. 13 hypothetical protein NP_562394.1 1733760 R 195102 CDS NP_562395.1 18310461 989789 complement(1734415..1735050) 1 NC_003366.1 no significant homology; hypothetical protein 1735050 989789 CPE1479 Clostridium perfringens str. 13 hypothetical protein NP_562395.1 1734415 R 195102 CDS NP_562396.1 18310462 989790 1735270..1736925 1 NC_003366.1 similar to gpu:AE004350_10 sulfate permease from Vibrio cholera (553 aa); 43.4% identity in 535 aa overlap. 10 transmembrane regions were found by PSORT.; sulfate permease 1736925 989790 CPE1480 Clostridium perfringens str. 13 sulfate permease NP_562396.1 1735270 D 195102 CDS NP_562397.1 18310463 989791 complement(1736966..1737118) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 1737118 989791 CPE1481 Clostridium perfringens str. 13 hypothetical protein NP_562397.1 1736966 R 195102 CDS NP_562398.1 18310464 989792 complement(1737195..1738160) 1 NC_003366.1 similar to sp:YEIC_ECOLI HYPOTHETICAL SUGAR KINASE IN NFO-FRUA INTERGENIC REGIO from Escherichia coli (313 aa); 33.7% identity in 306 aa overlap; sugar kinase 1738160 989792 CPE1482 Clostridium perfringens str. 13 sugar kinase NP_562398.1 1737195 R 195102 CDS NP_562399.1 18310465 989793 complement(1738200..1738394) 1 NC_003366.1 similar to gpu:AE004172_2 hypothetical protein from Vibrio cholerae (63 aa); 36.1% identity in 61 aa overlap; hypothetical protein 1738394 989793 CPE1483 Clostridium perfringens str. 13 hypothetical protein NP_562399.1 1738200 R 195102 CDS NP_562400.1 18310466 989794 complement(1738652..1739980) 1 NC_003366.1 similar to pir:A71849 hypothetical protein jhp1110 from Helicobacter pylori (strain J99) (459 aa); 27.3% identity in 436 aa overlap. 11 transmembrane regions were found by PSORT.; MATE efflux family protein 1739980 989794 CPE1484 Clostridium perfringens str. 13 MATE efflux family protein NP_562400.1 1738652 R 195102 CDS NP_562401.1 18310467 989795 complement(1740001..1740687) 1 NC_003366.1 similar to gpu:AP001511_100 ABC transporter (ATP-binding protein) from Bacillus halodurans (264 aa); 39.3% identity in 206 aa overlap; ATP-binding protein; ABC transporter 1740687 989795 CPE1485 Clostridium perfringens str. 13 ABC transporter NP_562401.1 1740001 R 195102 CDS NP_562402.1 18310468 989796 complement(1740689..1741444) 1 NC_003366.1 similar to pir:E72405 ABC transporter, permease, cysTW family from Thermotoga maritima (strain MSB8) (243 aa); 23.9% identity in 226 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permeaese protein; ABC transporter 1741444 989796 CPE1486 Clostridium perfringens str. 13 ABC transporter NP_562402.1 1740689 R 195102 CDS NP_562403.1 18310469 989797 complement(1741419..1742423) 1 NC_003366.1 similar to pir:D72405 hypothetical protein from Thermotoga maritima (strain MSB8) (300 aa); 29.7% identity in 266 aa overlap; hypothetical protein 1742423 989797 CPE1487 Clostridium perfringens str. 13 hypothetical protein NP_562403.1 1741419 R 195102 CDS NP_562404.1 18310470 989798 complement(1742670..1742855) 1 NC_003366.1 no significant homology; hypothetical protein 1742855 989798 CPE1488 Clostridium perfringens str. 13 hypothetical protein NP_562404.1 1742670 R 195102 CDS NP_562405.1 18310471 989799 complement(1743060..1743917) 1 NC_003366.1 no significant homology; hypothetical protein 1743917 989799 CPE1489 Clostridium perfringens str. 13 hypothetical protein NP_562405.1 1743060 R 195102 CDS NP_562406.1 18310472 989800 complement(1744021..1744797) 1 NC_003366.1 no significant homology N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; hypothetical protein 1744797 989800 CPE1490 Clostridium perfringens str. 13 hypothetical protein NP_562406.1 1744021 R 195102 CDS NP_562407.1 18310473 989801 1745032..1745454 1 NC_003366.1 no significant homology; hypothetical protein 1745454 989801 CPE1491 Clostridium perfringens str. 13 hypothetical protein NP_562407.1 1745032 D 195102 CDS NP_562408.1 18310474 989802 complement(1745657..1746181) 1 NC_003366.1 partially similar to sp:APL_LACLC ALKALINE PHOSPHATASE LIKE PROTEIN from Lactococcus lactis (242 aa); 28% identity in 157 aa overlap. 4 transmembrane regions were found by PSORT.; hypothetical protein 1746181 989802 CPE1492 Clostridium perfringens str. 13 hypothetical protein NP_562408.1 1745657 R 195102 CDS NP_562409.1 18310475 989803 complement(1746252..1746761) 1 NC_003366.1 similar to pir:B81322 probable integral membrane protein (dedA homolog) Cj1168c from Campylobacter jejuni (strain NCTC 11168) (200 aa); 29.7% identity in 158 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 1746761 989803 CPE1493 Clostridium perfringens str. 13 hypothetical protein NP_562409.1 1746252 R 195102 CDS NP_562410.1 18310476 989804 complement(1747023..1747856) 1 NC_003366.1 similar to gpu:AE004222_1 conserved hypothetical protein from Vibrio cholerae (310 aa); 33.1% identity in 275 aa overlap; PP-loop family protein 1747856 989804 CPE1494 Clostridium perfringens str. 13 PP-loop family protein NP_562410.1 1747023 R 195102 CDS NP_562411.1 18310477 989805 complement(1747807..1748061) 1 NC_003366.1 no significant homology; hypothetical protein 1748061 989805 CPE1495 Clostridium perfringens str. 13 hypothetical protein NP_562411.1 1747807 R 195102 CDS NP_562412.1 18310478 989806 1748260..1748529 1 NC_003366.1 ACT domain-containing protein; hypothetical protein 1748529 989806 CPE1496 Clostridium perfringens str. 13 hypothetical protein NP_562412.1 1748260 D 195102 CDS NP_562413.1 18310479 989807 1748546..1749898 1 NC_003366.1 similar to pir:C81059 conserved hypothetical protein NMB1652 from Neisseria meningitidis (group B strain MD58) (451 aa); 69% identity in 449 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1749898 989807 CPE1497 Clostridium perfringens str. 13 hypothetical protein NP_562413.1 1748546 D 195102 CDS NP_562414.1 18310480 989808 complement(1750111..1750614) 1 NC_003366.1 no significant homology N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 1750614 989808 CPE1498 Clostridium perfringens str. 13 hypothetical protein NP_562414.1 1750111 R 195102 CDS NP_562415.1 18310481 989809 complement(1750939..1751814) 1 NC_003366.1 similar to pir:T44344 late competence protein homolog comEC from Bacillus halodurans (266 aa); 33.7% identity in 246 aa overlap; late competence protein 1751814 comEC 989809 comEC Clostridium perfringens str. 13 late competence protein NP_562415.1 1750939 R 195102 CDS NP_562416.1 18310482 989810 complement(1751985..1753307) 1 NC_003366.1 similar to pir:C55521 virS protein from Clostridium perfringens (440 aa); 85.7% identity in 440 aa overlap. 5 transmembrane regions were found by PSORT.; sensor histidine kinase VirS 1753307 virS 989810 virS Clostridium perfringens str. 13 sensor histidine kinase VirS NP_562416.1 1751985 R 195102 CDS NP_562417.1 18310483 989811 complement(1753301..1754011) 1 NC_003366.1 similar to pir:S60139 virR protein from Clostridium perfringens (252 aa); 100% identity in 237 aa overlap; DNA-binding response regulator, LytTr family 1754011 virR 989811 virR Clostridium perfringens str. 13 DNA-binding response regulator, LytTr family NP_562417.1 1753301 R 195102 CDS NP_562418.1 18310484 989812 complement(1754150..1755163) 1 NC_003366.1 similar to pir:S49554 hypothetical protein 10C from Clostridium perfringens (337 aa); 95.5% identity in 337 aa overlap; hypothetical protein 1755163 989812 CPE1502 Clostridium perfringens str. 13 hypothetical protein NP_562418.1 1754150 R 195102 CDS NP_562419.1 18310485 989813 complement(1755260..1755547) 1 NC_003366.1 similar to sp:YVI2_CLOPE HYPOTHETICAL 10.7 KDA PROTEIN IN VIRR 5'REGION (ORF2) from Clostridium perfringens (95 aa); 100% identity in 95 aa overlap; hypothetical protein 1755547 989813 CPE1503 Clostridium perfringens str. 13 hypothetical protein NP_562419.1 1755260 R 195102 CDS NP_562420.1 18310486 989814 complement(1755771..1756784) 1 NC_003366.1 similar to sp:YABE_BACSU HYPOTHETICAL 47.7 KDA PROTEIN IN METS-KSGA INTERGENIC REGION from Bacillus subtilis (437 aa); 33.8% identity in 305 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1756784 989814 CPE1504 Clostridium perfringens str. 13 hypothetical protein NP_562420.1 1755771 R 195102 CDS NP_562421.1 18310487 989815 complement(1757210..1758508) 1 NC_003366.1 similar to sp:URAA_ECOLI URACIL PERMEASE (URACIL TRANSPORTER) from Escherichia coli (429 aa); 54.7% identity in 411 aa overlap. 12 transmembrane regions were found by PSORT.; uracil transporter 1758508 uraA 989815 uraA Clostridium perfringens str. 13 uracil transporter NP_562421.1 1757210 R 195102 CDS NP_562422.1 18310488 989816 1758696..1760279 1 NC_003366.1 similar to pir:E69861 ABC transporter (ATP-binding protein) homolog ykpA from Bacillus subtilis (540 aa); 70.7% identity in 525 aa overlap; ATP-binding protein; ABC transporter 1760279 989816 CPE1506 Clostridium perfringens str. 13 ABC transporter NP_562422.1 1758696 D 195102 CDS NP_562423.1 18310489 989817 complement(1760330..1761292) 1 NC_003366.1 similar to pir:F69829 endo-1,4-beta-xylanase homolog yheN from Bacillus subtilis> (282 aa); 32.3% identity in 192 aa overlap. N-terminal signal sequence was found by PSORT; endo-1,4-beta-xylanase 1761292 989817 CPE1507 Clostridium perfringens str. 13 endo-1,4-beta-xylanase NP_562423.1 1760330 R 195102 CDS NP_562424.1 18310490 989818 complement(1761676..1763862) 1 NC_003366.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1763862 topB 989818 topB Clostridium perfringens str. 13 DNA topoisomerase III NP_562424.1 1761676 R 195102 CDS NP_562425.1 18310491 989819 complement(1763959..1765377) 1 NC_003366.1 similar to pir:F69772 hypothetical protein ydbT from Bacillus subtilis (493 aa); 20.4% identity in 457 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 1765377 989819 CPE1509 Clostridium perfringens str. 13 hypothetical protein NP_562425.1 1763959 R 195102 CDS NP_562426.1 18310492 989820 complement(1765387..1765854) 1 NC_003366.1 similar to gpu:AP001512_307 BH1720 gene product from Bacillus halodurans (159 aa); 29.7% identity in 91 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1765854 989820 CPE1510 Clostridium perfringens str. 13 hypothetical protein NP_562426.1 1765387 R 195102 CDS NP_562427.1 18310493 989821 complement(1766269..1766667) 1 NC_003366.1 no significant homology; hypothetical protein 1766667 989821 CPE1511 Clostridium perfringens str. 13 hypothetical protein NP_562427.1 1766269 R 195102 CDS NP_562428.1 18310494 989822 complement(1766875..1770156) 1 NC_003366.1 similar to gpu:AE003965_12 hypothetical protein from Xylella fastidiosa (1197 aa); 21.8% identity in 1080 aa overlap. Also similar to many sensor histidine kinases.. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hybrid; sensor histidine kinase/response regulator 1770156 989822 CPE1512 Clostridium perfringens str. 13 sensor histidine kinase/response regulator NP_562428.1 1766875 R 195102 CDS NP_562429.1 18310495 989823 complement(1770238..1771338) 1 NC_003366.1 similar to gp:AF115542_1 unknown from Desulfitobacterium dehalogenans (388 aa); 25.9% identity in 363 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1771338 989823 CPE1513 Clostridium perfringens str. 13 hypothetical protein NP_562429.1 1770238 R 195102 CDS NP_562430.1 18310496 989824 complement(1771353..1772720) 1 NC_003366.1 similar to prf:2212278A algI gene from Pseudomonas aeruginosa (520 aa); 41.3% identity in 387 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; AlgI-related protein 1772720 argI 989824 argI Clostridium perfringens str. 13 AlgI-related protein NP_562430.1 1771353 R 195102 CDS NP_562431.1 18310497 989825 complement(1772948..1773445) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; lipoprotein 1773445 989825 CPE1515 Clostridium perfringens str. 13 lipoprotein NP_562431.1 1772948 R 195102 CDS NP_562432.1 18310498 989826 complement(1773697..1774920) 1 NC_003366.1 similar to gpu:AP001518_179 RNA helicase from Bacillus halodurans (389 aa); 38.2% identity in 377 aa overlap; ATP-dependent RNA helicase 1774920 989826 CPE1516 Clostridium perfringens str. 13 ATP-dependent RNA helicase NP_562432.1 1773697 R 195102 CDS NP_562433.1 18310499 989827 complement(1774938..1775249) 1 NC_003366.1 no significant homology; hypothetical protein 1775249 989827 CPE1517 Clostridium perfringens str. 13 hypothetical protein NP_562433.1 1774938 R 195102 CDS NP_562434.1 18310500 989828 complement(1775558..1776904) 1 NC_003366.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1776904 gdhA 989828 gdhA Clostridium perfringens str. 13 glutamate dehydrogenase NP_562434.1 1775558 R 195102 CDS NP_562435.1 18310501 989829 complement(1777386..1777880) 1 NC_003366.1 no significant homology 2 transmembrane regions were found by PSORT.; hypothetical protein 1777880 989829 CPE1519 Clostridium perfringens str. 13 hypothetical protein NP_562435.1 1777386 R 195102 CDS NP_562436.1 18310502 989830 1778114..1779139 1 NC_003366.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1779139 ilvE 989830 ilvE Clostridium perfringens str. 13 branched-chain amino acid aminotransferase NP_562436.1 1778114 D 195102 CDS NP_562437.1 18310503 989831 complement(1779183..1779596) 1 NC_003366.1 partially similar to sp:CAPA_STAAU CAPA PROTEIN from Staphylococcus aureus (221 aa); 23.7% identity in 114 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1779596 989831 CPE1521 Clostridium perfringens str. 13 hypothetical protein NP_562437.1 1779183 R 195102 CDS NP_562438.1 18310504 989832 complement(1779619..1780164) 1 NC_003366.1 no significant homology; hypothetical protein 1780164 989832 CPE1522 Clostridium perfringens str. 13 hypothetical protein NP_562438.1 1779619 R 195102 CDS NP_562439.1 18310505 989833 complement(1780361..1783744) 1 NC_003366.1 similar to >sp:NAGH_CLOPE HYALURONOGLUCOSAMINIDASE PRECURSOR (EC 3.2.1.35) (HYALURONIDASE) (MU TOXIN from Clostridium perfringens (1042 aa); 27.8% identity in 946 aa overlap; hyaluronidase 1783744 nagL 989833 nagL Clostridium perfringens str. 13 hyaluronidase NP_562439.1 1780361 R 195102 CDS NP_562440.1 18310506 989834 1784103..1785029 1 NC_003366.1 C-terminal portion is similar to sp:YAV4_XANCV HYPOTHETICAL 12 KDA AVIRULENCE PROTEIN IN AVRBS1 REGION from Xanthomonas campestris (104 aa); 39.6% identity in 91 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1785029 989834 CPE1524 Clostridium perfringens str. 13 hypothetical protein NP_562440.1 1784103 D 195102 CDS NP_562441.1 18310507 989835 complement(1785150..1786919) 1 NC_003366.1 similar to pir:S72638 hypothetical ABC exporter component B from Thermoanaerobacterium thermosulfurigenes (594 aa); 54% identity in 589 aa overlap. 6 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 1786919 989835 CPE1525 Clostridium perfringens str. 13 ABC transporter NP_562441.1 1785150 R 195102 CDS NP_562442.1 18310508 989836 complement(1786954..1788675) 1 NC_003366.1 similar to pir:S72637 hypothetical ABC exporter component A from Thermoanaerobacterium thermosulfurigenes (582 aa); 50.5% identity in 562 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 1788675 989836 CPE1526 Clostridium perfringens str. 13 ABC transporter NP_562442.1 1786954 R 195102 CDS NP_562443.1 18310509 989837 complement(1789308..1790102) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 1790102 989837 CPE1527 Clostridium perfringens str. 13 hypothetical protein NP_562443.1 1789308 R 195102 CDS NP_562444.1 18310510 989838 complement(1790285..1790644) 1 NC_003366.1 no significant homology N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1790644 989838 CPE1528 Clostridium perfringens str. 13 hypothetical protein NP_562444.1 1790285 R 195102 CDS NP_562445.1 18310511 989839 1790912..1792249 1 NC_003366.1 partially similar to gp:AB001488_13 ydaL gene product from Bacillus subtilis (576 aa); 29.3% identity in 208 aa overlap; hypothetical protein 1792249 989839 CPE1529 Clostridium perfringens str. 13 hypothetical protein NP_562445.1 1790912 D 195102 CDS NP_562446.1 18310512 989840 complement(1792316..1792732) 1 NC_003366.1 no significant homology N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 1792732 989840 CPE1530 Clostridium perfringens str. 13 hypothetical protein NP_562446.1 1792316 R 195102 CDS NP_562447.1 18310513 989841 complement(1792953..1793900) 1 NC_003366.1 similar to gp:AF059741_4 fructokinase from Clostridium beijerinckii (312 aa); 60.3% identity in 310 aa overlap; fructokinase 1793900 989841 CPE1531 Clostridium perfringens str. 13 fructokinase NP_562447.1 1792953 R 195102 CDS NP_562448.1 18310514 989842 complement(1793893..1795356) 1 NC_003366.1 similar to gp:AF059741_3 sucrose-6-P hydrolase from Clostridium beijerinckii (485 aa); 51.1% identity in 479 aa overlap; sucrose-6-P hydrolase 1795356 sacA 989842 sacA Clostridium perfringens str. 13 sucrose-6-P hydrolase NP_562448.1 1793893 R 195102 CDS NP_562449.1 18310515 989843 complement(1795396..1796376) 1 NC_003366.1 similar to gp:AF059741_2 sucrose repressor from Clostridium beijerinckii (330 aa); 62.5% identity in 320 aa overlap; sucrose operon repressor 1796376 989843 CPE1533 Clostridium perfringens str. 13 sucrose operon repressor NP_562449.1 1795396 R 195102 CDS NP_562450.1 18310516 989844 complement(1796505..1797857) 1 NC_003366.1 similar to gp:AF059741_1 sucrose-specific PTS permease from Clostridium beijerinckii (451 aa); 69.4% identity in 448 aa overlap. 10 transmembrane regions were found by PSORT.; sucrose-specific IIBC component; PTS system sucrose-specific transporter subunit IIBC 1797857 989844 CPE1534 Clostridium perfringens str. 13 PTS system sucrose-specific transporter subunit IIBC NP_562450.1 1796505 R 195102 CDS NP_562451.1 18310517 989845 complement(1798180..1798806) 1 NC_003366.1 partially similar to pir:C81254 hypothetical protein Cj1589 from Campylobacter jejuni (strain NCTC 11168) (265 aa); 31.7% identity in 82 aa overlap; hypothetical protein 1798806 989845 CPE1535 Clostridium perfringens str. 13 hypothetical protein NP_562451.1 1798180 R 195102 CDS NP_562452.1 18310518 989846 complement(1799318..1800364) 1 NC_003366.1 similar to sp:ASRC_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT C (EC 1.8.1.-) from Salmonella typhimurium (337 aa); 50% identity in 334 aa overlap; anaerobic sulfite reductase subunit C 1800364 asrC 989846 asrC Clostridium perfringens str. 13 anaerobic sulfite reductase subunit C NP_562452.1 1799318 R 195102 CDS NP_562453.1 18310519 989847 complement(1800377..1801168) 1 NC_003366.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 1801168 asrB 989847 asrB Clostridium perfringens str. 13 anaerobic sulfite reductase subunit B NP_562453.1 1800377 R 195102 CDS NP_562454.1 18310520 989848 complement(1801169..1802200) 1 NC_003366.1 similar to sp:ASRA_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT A (ANAEROBIC SULFITE REDUCTASE IRON-SULFUR SUBUNIT) from Salmonella typhimurium (347 aa); 39.5% identity in 342 aa overlap; anaerobic sulfite reductase subunit A 1802200 asrA 989848 asrA Clostridium perfringens str. 13 anaerobic sulfite reductase subunit A NP_562454.1 1801169 R 195102 CDS NP_562455.1 18310521 989849 1802460..1802870 1 NC_003366.1 no significant homology N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 1802870 989849 CPE1539 Clostridium perfringens str. 13 hypothetical protein NP_562455.1 1802460 D 195102 CDS NP_562456.1 18310522 989850 complement(1802968..1804152) 1 NC_003366.1 similar to sp:YKNZ_BACSU HYPOTHETICAL 42.1 KDA PROTEIN IN MOAD-FRUR INTERGENIC REGION from Bacillus subtilis (397 aa); 30.1% identity in 392 aa overlap. 4 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 1804152 989850 CPE1540 Clostridium perfringens str. 13 ABC transporter NP_562456.1 1802968 R 195102 CDS NP_562457.1 18310523 989851 complement(1804139..1804840) 1 NC_003366.1 similar to sp:YF08_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN MJ1508 from Methanococcus jannaschii (224 aa); 53.2% identity in 222 aa overlap; ATP-binding protein; ABC transporter 1804840 989851 CPE1541 Clostridium perfringens str. 13 ABC transporter NP_562457.1 1804139 R 195102 CDS NP_562458.1 18310524 989852 complement(1804830..1805960) 1 NC_003366.1 similar to pir:B70048 conserved hypothetical protein yvrP from Bacillus subtilis (397 aa); 28.9% identity in 374 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1805960 989852 CPE1542 Clostridium perfringens str. 13 hypothetical protein NP_562458.1 1804830 R 195102 CDS NP_562459.1 18310525 989853 complement(1806187..1806873) 1 NC_003366.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 1806873 bioD 989853 bioD Clostridium perfringens str. 13 dithiobiotin synthetase NP_562459.1 1806187 R 195102 CDS NP_562460.1 18310526 989854 complement(1806876..1807835) 1 NC_003366.1 catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine; biotin synthase 1807835 bioB 989854 bioB Clostridium perfringens str. 13 biotin synthase NP_562460.1 1806876 R 195102 CDS NP_562461.1 18310527 989855 complement(1807854..1808408) 1 NC_003366.1 similar to sp:BIOY_BACSH BIOY PROTEIN from Bacillus sphaericus (215 aa); 43.4% identity in 173 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; biotin synthase 1808408 bioY 989855 bioY Clostridium perfringens str. 13 biotin synthase NP_562461.1 1807854 R 195102 CDS NP_562462.1 18310528 989856 complement(1808794..1809885) 1 NC_003366.1 similar to sp:YPUA_BACSU HYPOTHETICAL 31.3 KDA PROTEIN IN LYSA-PPIB INTERGENIC REGION (ORFX19) from Bacillus subtilis (290 aa); 31% identity in 271 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1809885 989856 CPE1546 Clostridium perfringens str. 13 hypothetical protein NP_562462.1 1808794 R 195102 CDS NP_562463.1 18310529 989857 complement(1810241..1813678) 1 NC_003366.1 similar to gp:AB015670_7 Bacillus sp. genes for CDase, CGTase, MBP and 15 ORFs, partial and complete cds from Bacillus sp (549 aa); 45% identity in 522 aa overlap.Also similar to prf:2516401X stage V sporulation protein K from Bacillus cereus; stage V sporulation protein K 1813678 spoVK 989857 spoVK Clostridium perfringens str. 13 stage V sporulation protein K NP_562463.1 1810241 R 195102 CDS NP_562464.1 18310530 989858 complement(1813734..1815722) 1 NC_003366.1 similar to pir:S66017 formate dehydrogenase homolog yyaE from Bacillus subtilis (667 aa); 32.1% identity in 667 aa overlap; molybdopterin oxidoreductase 1815722 fdh 989858 fdh Clostridium perfringens str. 13 molybdopterin oxidoreductase NP_562464.1 1813734 R 195102 CDS NP_562465.1 18310531 989859 1816133..1817227 1 NC_003366.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 1817227 prs 989859 prs Clostridium perfringens str. 13 phosphoribosylpyrophosphate synthetase NP_562465.1 1816133 D 195102 CDS NP_562466.1 18310532 989860 complement(1817277..1818338) 1 NC_003366.1 no significant homology; hypothetical protein 1818338 989860 CPE1550 Clostridium perfringens str. 13 hypothetical protein NP_562466.1 1817277 R 195102 CDS NP_562467.1 18310533 989861 complement(1818549..1819538) 1 NC_003366.1 similar to pir:F69829 endo-1,4-beta-xylanase homolog yheN from Bacillus subtilis (282 aa); 31.9% identity in 226 aa overlap. N-terminal signal sequence was found by PSORT; endo-1,4-beta-xylanase 1819538 989861 CPE1551 Clostridium perfringens str. 13 endo-1,4-beta-xylanase NP_562467.1 1818549 R 195102 CDS NP_562468.1 18310534 989862 complement(1819759..1821726) 1 NC_003366.1 similar to gp:BTU67061_1 pullulanase from Bacteroides thetaiotaomicron (668 aa); 45.2% identity in 615 aa overlap; pullulanase 1821726 pulA 989862 pulA Clostridium perfringens str. 13 pullulanase NP_562468.1 1819759 R 195102 CDS NP_562469.1 18310535 989863 1821902..1822438 1 NC_003366.1 similar to sp:LEPC_BACCL SIGNAL PEPTIDASE I (EC 3.4.21.89) (SPASE I) (LEADER PEPTIDASE I) from Bacillus caldolyticus (182 aa); 47.3% identity in 129 aa overlap. N-terminal signal sequence was found by PSORT; signal peptidase I 1822438 sipS 989863 sipS Clostridium perfringens str. 13 signal peptidase I NP_562469.1 1821902 D 195102 CDS NP_562470.1 18310536 989864 complement(1822494..1823339) 1 NC_003366.1 no significant homology; lipoprotein 1823339 989864 CPE1554 Clostridium perfringens str. 13 lipoprotein NP_562470.1 1822494 R 195102 CDS NP_562471.1 18310537 989865 complement(1823448..1823717) 1 NC_003366.1 no significant homology; hypothetical protein 1823717 989865 CPE1555 Clostridium perfringens str. 13 hypothetical protein NP_562471.1 1823448 R 195102 CDS NP_562472.1 18310538 989866 complement(1823828..1825843) 1 NC_003366.1 partially similar to sp:CGMA_RHIME CYCLIC BETA-1,2-GLUCAN MODIFICATION PROTEIN from Rhizobium melioti (639 aa); 30.8% identity in 383 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 1825843 989866 CPE1556 Clostridium perfringens str. 13 hypothetical protein NP_562472.1 1823828 R 195102 CDS NP_562473.1 18310539 989867 complement(1826145..1827095) 1 NC_003366.1 similar to gpu:AP001512_51 BH1464 gene product from Bacillus halodurans (326 aa); 29.7% identity in 313 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 1827095 989867 CPE1557 Clostridium perfringens str. 13 hypothetical protein NP_562473.1 1826145 R 195102 CDS NP_562474.1 18310540 989868 1827243..1827884 1 NC_003366.1 similar to pir:G72259 probable di-trans,poly-cis-decaprenylcistransferase (EC 2.5.1.31) from Thermotoga maritima (strain MSB8) (233 aa); 33.8% identity in 213 aa overlap; di-trans, poly-cis-decaprenylcistransferase 1827884 989868 CPE1558 Clostridium perfringens str. 13 di-trans, poly-cis-decaprenylcistransferase NP_562474.1 1827243 D 195102 CDS NP_562475.1 18310541 989869 1827889..1829388 1 NC_003366.1 similar to pir:T31463 probable diapophytoene dehydrogenase crtN from Heliobacillus mobilis (517 aa); 31% identity in 480 aa overlap. N-terminal signal sequence was found by PSORT; diapophytoene dehydrogenase 1829388 989869 CPE1559 Clostridium perfringens str. 13 diapophytoene dehydrogenase NP_562475.1 1827889 D 195102 CDS NP_562476.1 18310542 989870 complement(1829419..1831110) 1 NC_003366.1 similar to sp:YK27_AQUAE HYPOTHETICAL PROTEIN AQ_2027 from Aquifex aeolicus (364 aa); 47.9% identity in 165 aa overlap. 5 transmembrane regions were found by PSORT.; diguanylate cyclase 1831110 989870 CPE1560 Clostridium perfringens str. 13 diguanylate cyclase NP_562476.1 1829419 R 195102 CDS NP_562477.1 18310543 989871 complement(1831325..1831969) 1 NC_003366.1 no significant homology 5 transmembrane regions were found by PSORT.; hypothetical protein 1831969 989871 CPE1561 Clostridium perfringens str. 13 hypothetical protein NP_562477.1 1831325 R 195102 CDS NP_562478.1 18310544 989872 complement(1831971..1832480) 1 NC_003366.1 no significant homology 4 transmembrane regions were found by PSORT.; hypothetical protein 1832480 989872 CPE1562 Clostridium perfringens str. 13 hypothetical protein NP_562478.1 1831971 R 195102 CDS NP_562479.1 18310545 989873 complement(1832449..1833015) 1 NC_003366.1 no significant homology N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1833015 989873 CPE1563 Clostridium perfringens str. 13 hypothetical protein NP_562479.1 1832449 R 195102 CDS NP_562480.1 18310546 989874 complement(1833167..1833727) 1 NC_003366.1 similar to gpu:AP001515_27 BH2293 gene product from Bacillus halodurans (212 aa); 30.2% identity in 129 aa overlap. ATA start. 5 transmembrane regions were found by PSORT.; hypothetical protein 1833727 989874 CPE1564 Clostridium perfringens str. 13 hypothetical protein NP_562480.1 1833167 R 195102 CDS NP_562481.1 18310547 989875 complement(1833988..1834983) 1 NC_003366.1 similar to gpu:AP001508_188 BH0465 gene product from Bacillus halodurans (318 aa); 38.7% identity in 331 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein 1834983 989875 CPE1565 Clostridium perfringens str. 13 hypothetical protein NP_562481.1 1833988 R 195102 CDS NP_562482.1 18310548 989876 complement(1835113..1836192) 1 NC_003366.1 similar to gpu:AE004300_1 DNA-damage-inducible protein P from Vibrio cholerae (360 aa); 40.8% identity in 336 aa overlap; DNA polymerase IV 1836192 dinP 989876 dinP Clostridium perfringens str. 13 DNA polymerase IV NP_562482.1 1835113 R 195102 CDS NP_562483.1 18310549 989877 complement(1836335..1836967) 1 NC_003366.1 similar to sp:CYPB_BACSU PEPTIDYL-PROLYL CIS-TRANS ISOMERASE B (EC 5.2.1.8) (PPIASE B) (ROTAMASE B) from Bacillus subtilis (143 aa); 51.3% identity in 117 aa overlap; cyclophilin type peptidyl-prolyl cis-trans isomerase 1836967 ppiB 989877 ppiB Clostridium perfringens str. 13 cyclophilin type peptidyl-prolyl cis-trans isomerase NP_562483.1 1836335 R 195102 CDS NP_562484.1 18310550 989878 complement(1837145..1837549) 1 NC_003366.1 no significant homology; hypothetical protein 1837549 989878 CPE1568 Clostridium perfringens str. 13 hypothetical protein NP_562484.1 1837145 R 195102 CDS NP_562485.1 18310551 989879 complement(1837666..1838496) 1 NC_003366.1 similar to gpu:AP001508_220 BH0497 gene product from Bacillus halodurans (247 aa); 30.7% identity in 274 aa overlap; HAD hydrolase 1838496 989879 CPE1569 Clostridium perfringens str. 13 HAD hydrolase NP_562485.1 1837666 R 195102 CDS NP_562486.1 18310552 989880 complement(1838800..1839513) 1 NC_003366.1 similar to sp:IM30_PEA CHLOROPLAST MEMBRANE-ASSOCIATED 30 KDA PROTEIN PRECURSOR (M30) from Pisum sativum (323 aa); 24.6% identity in 240 aa overlap. Also similar to many phage shock proteins; phage shock protein A 1839513 989880 CPE1570 Clostridium perfringens str. 13 phage shock protein A NP_562486.1 1838800 R 195102 CDS NP_562487.1 18310553 989881 complement(1839598..1840299) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; lipoprotein 1840299 989881 CPE1571 Clostridium perfringens str. 13 lipoprotein NP_562487.1 1839598 R 195102 CDS NP_562488.1 18310554 989882 1840447..1841112 1 NC_003366.1 no significant homology; hypothetical protein 1841112 989882 CPE1572 Clostridium perfringens str. 13 hypothetical protein NP_562488.1 1840447 D 195102 CDS NP_562489.1 18310555 989883 complement(1841356..1843692) 1 NC_003366.1 Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; bifunctional glutamate--cysteine ligase/glutathione synthetase 1843692 989883 CPE1573 Clostridium perfringens str. 13 bifunctional glutamate--cysteine ligase/glutathione synthetase NP_562489.1 1841356 R 195102 CDS NP_562490.1 18310556 989884 complement(1844089..1845006) 1 NC_003366.1 partially similar to pir:E71657 hypothetical protein RP534 from Rickettsia prowazekii (598 aa); 28.3% identity in 173 aa overlap; hypothetical protein 1845006 989884 CPE1574 Clostridium perfringens str. 13 hypothetical protein NP_562490.1 1844089 R 195102 CDS NP_562491.1 18310557 989885 complement(1845153..1846442) 1 NC_003366.1 similar to gpu:AE004299_6 conserved hypothetical protein from Vibrio cholerae (430 aa); 43% identity in 430 aa overlap. 12 transmembrane regions were found by PSORT.; hypothetical protein 1846442 989885 CPE1575 Clostridium perfringens str. 13 hypothetical protein NP_562491.1 1845153 R 195102 CDS NP_562492.1 18310558 989886 complement(1846695..1847063) 1 NC_003366.1 similar to pir:H72254 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (131 aa); 34.8% identity in 112 aa overlap; hypothetical protein 1847063 989886 CPE1576 Clostridium perfringens str. 13 hypothetical protein NP_562492.1 1846695 R 195102 CDS NP_562493.1 18310559 989887 complement(1847265..1848218) 1 NC_003366.1 similar to pir:F70009 conserved hypothetical protein yufQ from Bacillus subtilis (319 aa); 42.8% identity in 152 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; permease; ABC transporter 1848218 989887 CPE1577 Clostridium perfringens str. 13 ABC transporter NP_562493.1 1847265 R 195102 CDS NP_562494.1 18310560 989888 complement(1848218..1849315) 1 NC_003366.1 similar to gpu:CST276209_12 permease 1 of an ABC transporter from Clostridium sticklandii (354 aa); 43% identity in 316 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permease; ABC transporter 1849315 989888 CPE1578 Clostridium perfringens str. 13 ABC transporter NP_562494.1 1848218 R 195102 CDS NP_562495.1 18310561 989889 complement(1849305..1850840) 1 NC_003366.1 similar to pir:D70009 probable ABC transporter yufO from Bacillus subtilis (510 aa); 61.8% identity in 502 aa overlap; ATP-binding protein; ABC transporter 1850840 989889 CPE1579 Clostridium perfringens str. 13 ABC transporter NP_562495.1 1849305 R 195102 CDS NP_562496.1 18310562 989890 complement(1850981..1852093) 1 NC_003366.1 similar to sp:TMPC_TREPA MEMBRANE LIPOPROTEIN TMPC PRECURSOR (MEMBRANE PROTEIN C) (35 KDA ANTIGEN) from Treponema pallidum (353 aa); 37.5% identity in 333 aa overlap. 1 transmembrane region was found by PSORT; membrane lipoprotein TmpC 1852093 989890 CPE1580 Clostridium perfringens str. 13 membrane lipoprotein TmpC NP_562496.1 1850981 R 195102 CDS NP_562497.1 18310563 989891 complement(1852647..1853468) 1 NC_003366.1 partially similar to pir:C75472 probable lipase from Deinococcus radiodurans (strain R1) (454 aa); 26.9% identity in 216 aa overlap.Also similar to pir:T43794 probable lipase lipA from Clostridium perfringens; lipase 1853468 989891 CPE1581 Clostridium perfringens str. 13 lipase NP_562497.1 1852647 R 195102 CDS NP_562498.1 18310564 989892 complement(1853950..1854771) 1 NC_003366.1 partially similar to pir:F75200 hypothetical protein PAB2261 from Pyrococcus abyssi (strain Orsay) (248 aa); 31.5% identity in 127 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 1854771 989892 CPE1582 Clostridium perfringens str. 13 hypothetical protein NP_562498.1 1853950 R 195102 CDS NP_562499.1 18310565 989893 complement(1854780..1856486) 1 NC_003366.1 similar to pir:H69858 cation ABC transporter (ATP-binding protein) homolog ykoD from Bacillus subtilis (490 aa); 31.6% identity in 488 aa overlap. 1 transmembrane region was found by PSORT; ATP-binding protein; ABC transporter 1856486 989893 CPE1583 Clostridium perfringens str. 13 ABC transporter NP_562499.1 1854780 R 195102 CDS NP_562500.1 18310566 989894 complement(1856632..1857189) 1 NC_003366.1 similar to gp:LLA012388_6 hypothetical protein from Lactococcus lactis (182 aa); 51.1% identity in 184 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 1857189 989894 CPE1584 Clostridium perfringens str. 13 hypothetical protein NP_562500.1 1856632 R 195102 CDS NP_562501.1 18310567 989895 1857409..1857861 1 NC_003366.1 similar to pir:T44113 conserved hypothetical protein from Staphylococcus aureus (131 aa); 48.1% identity in 77 aa overlap. N-terminal signal sequence was found by PSORT; rhodanese domain-containing protein 1857861 989895 CPE1585 Clostridium perfringens str. 13 rhodanese domain-containing protein NP_562501.1 1857409 D 195102 CDS NP_562502.1 18310568 989896 complement(1857907..1858230) 1 NC_003366.1 no significant homology; hypothetical protein 1858230 989896 CPE1586 Clostridium perfringens str. 13 hypothetical protein NP_562502.1 1857907 R 195102 CDS NP_562503.1 18310569 989897 complement(1858372..1861566) 1 NC_003366.1 similar to sp:PULA_THEMA PULLULANASE PRECURSOR (EC 3.2.1.41) (ALPHA-DEXTRIN ENDO-1,6-ALPHA- GLUCOSIDASE) (PULLULAN 6-GLUCANOHYDROLASE) from Thermotoga maritima (strain MSB8) (843 aa); 37.1% identity in 832 aa overlap; pullulanase 1861566 pulB 989897 pulB Clostridium perfringens str. 13 pullulanase NP_562503.1 1858372 R 195102 CDS NP_562504.1 18310570 989898 complement(1861666..1863660) 1 NC_003366.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 1863660 glgB 989898 glgB Clostridium perfringens str. 13 glycogen branching protein NP_562504.1 1861666 R 195102 CDS NP_562505.1 18310571 989899 complement(1863740..1864447) 1 NC_003366.1 similar to sp:YYBI_BACSU HYPOTHETICAL 30.1 KDA PROTEIN IN COTF-TETB INTERGENIC REGION from Bacillus subtilis (262 aa); 33.3% identity in 132 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 1864447 989899 CPE1589 Clostridium perfringens str. 13 hypothetical protein NP_562505.1 1863740 R 195102 CDS NP_562506.1 18310572 989900 1864689..1865459 1 NC_003366.1 similar to gpu:AP001507_81 BH0081 gene product from Bacillus halodurans (251 aa); 31.3% identity in 217 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 1865459 989900 CPE1590 Clostridium perfringens str. 13 hypothetical protein NP_562506.1 1864689 D 195102 CDS NP_562507.1 18310573 989901 1865456..1865947 1 NC_003366.1 similar to gpu:AP001507_82 BH0082 from Bacillus halodurans (150 aa); 34.1% identity in 135 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 1865947 989901 CPE1591 Clostridium perfringens str. 13 hypothetical protein NP_562507.1 1865456 D 195102 CDS NP_562508.1 18310574 989902 complement(1866140..1866907) 1 NC_003366.1 partially similar to prf:2117382A alpha toxin from Clostridium novyi (2178 aa); 25.4% identity in 197 aa overlap; hypothetical protein 1866907 989902 CPE1592 Clostridium perfringens str. 13 hypothetical protein NP_562508.1 1866140 R 195102 CDS NP_562509.1 18310575 989903 complement(1867256..1868683) 1 NC_003366.1 similar to gp:D85082_8 YfiX from Bacillus subtilis (610 aa); 34.9% identity in 476 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 1868683 989903 CPE1593 Clostridium perfringens str. 13 hypothetical protein NP_562509.1 1867256 R 195102 CDS NP_562510.1 18310576 989904 complement(1868755..1868967) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 1868967 989904 CPE1594 Clostridium perfringens str. 13 hypothetical protein NP_562510.1 1868755 R 195102 CDS NP_562511.1 18310577 989905 complement(1869140..1869463) 1 NC_003366.1 similar to pir:G69781 thioredoxin homolog ydfQ from Bacillus subtilis (112 aa); 31% identity in 84 aa overlap. 1 transmembrane region was found by PSORT; thioredoxin 1869463 989905 CPE1595 Clostridium perfringens str. 13 thioredoxin NP_562511.1 1869140 R 195102 CDS NP_562512.1 18310578 989906 complement(1869559..1870518) 1 NC_003366.1 similar to >pir:S41858 hypothetical protein from Thermoanaerobacterium saccharolyticum (320 aa); 48.8% identity in 303 aa overlap; acetylxylan esterase 1870518 989906 CPE1596 Clostridium perfringens str. 13 acetylxylan esterase NP_562512.1 1869559 R 195102 CDS NP_562513.1 18310579 989907 1870960..1871823 1 NC_003366.1 similar to gpu:AP001520_185 BH3961 gene product from Bacillus halodurans (295 aa); 32.8% identity in 247 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1871823 989907 CPE1597 Clostridium perfringens str. 13 hypothetical protein NP_562513.1 1870960 D 195102 CDS NP_562514.1 18310580 989908 complement(1871906..1872334) 1 NC_003366.1 no significant homology; hypothetical protein 1872334 989908 CPE1598 Clostridium perfringens str. 13 hypothetical protein NP_562514.1 1871906 R 195102 CDS NP_562515.1 18310581 989909 complement(1872446..1873027) 1 NC_003366.1 similar to pir:D75087 thiamin phosphate pyrophosphorylase (thie) PAB1645 from Pyrococcus abyssi (strain Orsay) (207 aa); 30.6% identity in 193 aa overlap; thiamine monophosphate synthase 1873027 thiE 989909 thiE Clostridium perfringens str. 13 thiamine monophosphate synthase NP_562515.1 1872446 R 195102 CDS NP_562516.1 18310582 989910 complement(1873057..1874160) 1 NC_003366.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 1874160 thiH 989910 thiH Clostridium perfringens str. 13 thiamine biosynthesis protein ThiH NP_562516.1 1873057 R 195102 CDS NP_562517.1 18310583 989911 complement(1874173..1874937) 1 NC_003366.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 1874937 thiG 989911 thiG Clostridium perfringens str. 13 thiazole synthase NP_562517.1 1874173 R 195102 CDS NP_562518.1 18310584 989912 complement(1875061..1875870) 1 NC_003366.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF 1875870 989912 CPE1602 Clostridium perfringens str. 13 thiamine biosynthesis protein ThiF NP_562518.1 1875061 R 195102 CDS NP_562519.1 18310585 989913 complement(1875946..1876140) 1 NC_003366.1 similar to pir:C69845 hypothetical protein yjbS from Bacillus subtilis (66 aa); 50% identity in 62 aa overlap; thiamine biosynthesis protein ThiS 1876140 989913 CPE1603 Clostridium perfringens str. 13 thiamine biosynthesis protein ThiS NP_562519.1 1875946 R 195102 CDS NP_562520.1 18310586 989914 complement(1876416..1878116) 1 NC_003366.1 similar to pir:G69804 multidrug-efflux transporter homolog yfiU from Bacillus subtilis (518 aa); 36.9% identity in 425 aa overlap. N-terminal signal sequence and 12 transmembrane regions were found by PSORT.; major facilitator family transporter 1878116 989914 CPE1604 Clostridium perfringens str. 13 major facilitator family transporter NP_562520.1 1876416 R 195102 CDS NP_562521.1 18310587 989915 complement(1878452..1879261) 1 NC_003366.1 similar to pir:C59107 hypothetical protein pXO1-131 from Bacillus anthracis virulence plasmid pXO1 (349 aa); 40.2% identity in 266 aa overlap; GTP pyrophosphokinase 1879261 989915 CPE1605 Clostridium perfringens str. 13 GTP pyrophosphokinase NP_562521.1 1878452 R 195102 CDS NP_562522.1 18310588 989916 complement(1879313..1879612) 1 NC_003366.1 no significant homology; hypothetical protein 1879612 989916 CPE1606 Clostridium perfringens str. 13 hypothetical protein NP_562522.1 1879313 R 195102 CDS NP_562523.1 18310589 989917 complement(1879670..1880113) 1 NC_003366.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1880113 989917 CPE1607 Clostridium perfringens str. 13 methionine sulfoxide reductase B NP_562523.1 1879670 R 195102 CDS NP_562524.1 18310590 989918 complement(1880189..1880836) 1 NC_003366.1 similar to gp:AF117259_1 replication protein from Staphylococcus aureus (303 aa); 27.2% identity in 103 aa overlap; hypothetical protein 1880836 989918 CPE1608 Clostridium perfringens str. 13 hypothetical protein NP_562524.1 1880189 R 195102 CDS NP_562525.1 18310591 989919 1880986..1881285 1 NC_003366.1 no significant homology; hypothetical protein 1881285 989919 CPE1609 Clostridium perfringens str. 13 hypothetical protein NP_562525.1 1880986 D 195102 CDS NP_562526.1 18310592 989920 complement(1881329..1882312) 1 NC_003366.1 similar to pir:F69829 endo-1,4-beta-xylanase homolog yheN from Bacillus subtilis (282 aa); 31.6% identity in 231 aa overlap. N-terminal signal sequence was found by PSORT; endo-1,4-beta-xylanase 1882312 989920 CPE1610 Clostridium perfringens str. 13 endo-1,4-beta-xylanase NP_562526.1 1881329 R 195102 CDS NP_562527.1 18310593 989921 complement(1882553..1882822) 1 NC_003366.1 no significant homology N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1882822 989921 CPE1611 Clostridium perfringens str. 13 hypothetical protein NP_562527.1 1882553 R 195102 CDS NP_562528.1 18310594 989922 1882925..1883578 1 NC_003366.1 similar to sp:YTXB_BACSU HYPOTHETICAL 23.3 KDA PROTEIN IN DNAI-THRS INTERGENIC REGION (ORF-213) from Bacillus subtilis (213 aa); 23.2% identity in 151 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; hypothetical protein 1883578 989922 CPE1612 Clostridium perfringens str. 13 hypothetical protein NP_562528.1 1882925 D 195102 CDS NP_562529.1 18310595 989923 complement(1883647..1884012) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 1884012 989923 CPE1613 Clostridium perfringens str. 13 hypothetical protein NP_562529.1 1883647 R 195102 CDS NP_562530.1 18310596 989924 complement(1884141..1885466) 1 NC_003366.1 similar to gpu:AP001519_115 cell wall-binding protein from Bacillus halodurans (461 aa); 27.3% identity in 429 aa overlap. N-terminal signal sequence was found by PSORT; cell wall-binding protein 1885466 989924 CPE1614 Clostridium perfringens str. 13 cell wall-binding protein NP_562530.1 1884141 R 195102 CDS NP_562531.1 18310597 989925 complement(1885709..1885927) 1 NC_003366.1 no significant homology; hypothetical protein 1885927 989925 CPE1615 Clostridium perfringens str. 13 hypothetical protein NP_562531.1 1885709 R 195102 CDS NP_562532.1 18310598 989926 1886074..1886262 1 NC_003366.1 no significant homology; hypothetical protein 1886262 989926 CPE1616 Clostridium perfringens str. 13 hypothetical protein NP_562532.1 1886074 D 195102 CDS NP_562533.1 18310599 989927 complement(1886615..1887010) 1 NC_003366.1 no significant homology; hypothetical protein 1887010 989927 CPE1617 Clostridium perfringens str. 13 hypothetical protein NP_562533.1 1886615 R 195102 CDS NP_562534.1 18310600 989928 complement(1887026..1887283) 1 NC_003366.1 no significant homology; hypothetical protein 1887283 989928 CPE1618 Clostridium perfringens str. 13 hypothetical protein NP_562534.1 1887026 R 195102 CDS NP_562535.1 18310601 989929 complement(1887300..1889591) 1 NC_003366.1 similar to pir:H70040 hypothetical protein yvgS from Bacillus subtilis (774 aa); 29.9% identity in 699 aa overlap; ATP-dependent DNA helicase, UvrD/REP family 1889591 989929 CPE1619 Clostridium perfringens str. 13 ATP-dependent DNA helicase, UvrD/REP family NP_562535.1 1887300 R 195102 CDS NP_562536.1 18310602 989930 1890116..1890586 1 NC_003366.1 no significant homology; hypothetical protein 1890586 989930 CPE1620 Clostridium perfringens str. 13 hypothetical protein NP_562536.1 1890116 D 195102 CDS NP_562537.1 18310603 989931 complement(1890669..1891475) 1 NC_003366.1 similar to gpu:AP001508_150 BH0427 gene product from Bacillus haloduran (301 aa); 36.9% identity in 268 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 1891475 989931 CPE1621 Clostridium perfringens str. 13 hypothetical protein NP_562537.1 1890669 R 195102 CDS NP_562538.1 18310604 989932 complement(1891744..1892739) 1 NC_003366.1 similar to sp:YYBI_BACSU HYPOTHETICAL 30.1 KDA PROTEIN IN COTF-TETB INTERGENIC REGION from Bacillus subtilis (262 aa); 27.3% identity in 227 aa overlap; hypothetical protein 1892739 989932 CPE1622 Clostridium perfringens str. 13 hypothetical protein NP_562538.1 1891744 R 195102 CDS NP_562539.1 18310605 989933 1892881..1893546 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; lipoprotein 1893546 989933 CPE1623 Clostridium perfringens str. 13 lipoprotein NP_562539.1 1892881 D 195102 CDS NP_562540.1 18310606 989934 1893868..1895793 1 NC_003366.1 partially similar to gp:KPN250891_3 virulence protein Q from Klebsiella pneumoniae (328 aa); 27.1% identity in 118 aa overlap. 9 transmembrane regions were found by PSORT.; hypothetical protein 1895793 989934 CPE1624 Clostridium perfringens str. 13 hypothetical protein NP_562540.1 1893868 D 195102 CDS NP_562541.1 18310607 989935 complement(1896218..1899472) 1 NC_003366.1 similar to prf:2516401B SNF gene from Bacillus cereus (1064 aa); 34.4% identity in 868 aa overlap; helicase, SNF2/RAD54 family 1899472 989935 CPE1625 Clostridium perfringens str. 13 helicase, SNF2/RAD54 family NP_562541.1 1896218 R 195102 CDS NP_562542.1 18310608 989936 complement(1899839..1900825) 1 NC_003366.1 similar to gpu:AP001519_242 transcriptional repressor of the ribose operon from Bacillus halodurans (331 aa); 38.1% identity in 310 aa overlap. 1 transmembrane region was found by PSORT; LacI family; transcriptional regulator 1900825 989936 CPE1626 Clostridium perfringens str. 13 transcriptional regulator NP_562542.1 1899839 R 195102 CDS NP_562543.1 18310609 989937 complement(1900964..1901404) 1 NC_003366.1 similar to sp:RBSB_BACSU D-RIBOSE-BINDING PROTEIN PRECURSOR from Bacillus subtilis (305 aa); 55.7% identity in 131 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing); ribose ABC transporter 1901404 rbsB 989937 rbsB Clostridium perfringens str. 13 ribose ABC transporter NP_562543.1 1900964 R 195102 CDS NP_562544.1 18310610 989938 complement(1901337..1901876) 1 NC_003366.1 similar to sp:RBSB_ECOLI D-RIBOSE-BINDING PERIPLASMIC PROTEIN PRECURSOR from Escherichia coli (296 aa); 56.6% identity in 166 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing). N-terminal signal sequence was found by PSORT; ribose ABC transporter 1901876 989938 CPE1628 Clostridium perfringens str. 13 ribose ABC transporter NP_562544.1 1901337 R 195102 CDS NP_562545.1 18310611 989939 complement(1901898..1902833) 1 NC_003366.1 similar to gpu:AE004354_5 ribose ABC transporter, permease from Vibrio cholerae (332 aa); 45.4% identity in 295 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; ribose ABC transporter 1902833 rbsC 989939 rbsC Clostridium perfringens str. 13 ribose ABC transporter NP_562545.1 1901898 R 195102 CDS NP_562546.1 18310612 989940 complement(1902847..1904352) 1 NC_003366.1 similar to gp:ECOUW82_115 high affinity ribose transport protein from Escherichia coli (501 aa); 52.2% identity in 492 aa overlap; ATP-binding protein; ribose ABC transporter 1904352 rbsA 989940 rbsA Clostridium perfringens str. 13 ribose ABC transporter NP_562546.1 1902847 R 195102 CDS NP_562547.1 18310613 989941 complement(1904439..1904834) 1 NC_003366.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 1904834 rbsD 989941 rbsD Clostridium perfringens str. 13 D-ribose pyranase NP_562547.1 1904439 R 195102 CDS NP_562548.1 18310614 989942 complement(1904837..1905769) 1 NC_003366.1 similar to gp:AF115391_7 ribokinase RbsK (EC 2.7.1.15) from Lactobacillus sakei (302 aa); 48% identity in 302 aa overlap; ribokinase 1905769 rbsK 989942 rbsK Clostridium perfringens str. 13 ribokinase NP_562548.1 1904837 R 195102 CDS NP_562549.1 18310615 989943 complement(1905910..1906377) 1 NC_003366.1 similar to sp:DEF_CLOAB POLYPEPTIDE DEFORMYLASE (EC 3.5.1.31) (PDF) (FORMYLMETHIONINE DEFORMYLASE) from Clostridium acetobutylicum (150 aa); 45.9% identity in 148 aa overlap; formylmethionine deformylase; polypeptide deformylase 1906377 def 989943 def Clostridium perfringens str. 13 polypeptide deformylase NP_562549.1 1905910 R 195102 CDS NP_562550.1 18310616 989944 complement(1906533..1907492) 1 NC_003366.1 similar to pir:B69721 teichoic acid linkage unit synthesis tagO from Bacillus subtilis (358 aa); 35.1% identity in 305 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; undecaprenyl-phosphate N-acetylglucosaminyltransferase 1907492 tagO 989944 tagO Clostridium perfringens str. 13 undecaprenyl-phosphate N-acetylglucosaminyltransferase NP_562550.1 1906533 R 195102 CDS NP_562551.1 18310617 989945 complement(1907638..1908204) 1 NC_003366.1 similar to gpu:AP001508_15 BH0292 gene product from Bacillus halodurans (177 aa); 35.7% identity in 84 aa overlap; ArsR family; transcriptional regulator 1908204 989945 CPE1635 Clostridium perfringens str. 13 transcriptional regulator NP_562551.1 1907638 R 195102 CDS NP_562552.1 18310618 989946 complement(1908420..1909064) 1 NC_003366.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 1909064 ntpD 989946 ntpD Clostridium perfringens str. 13 V-type ATP synthase subunit D NP_562552.1 1908420 R 195102 CDS NP_562553.1 18310619 989947 complement(1909067..1910449) 1 NC_003366.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 1910449 ntpB 989947 ntpB Clostridium perfringens str. 13 V-type ATP synthase subunit B NP_562553.1 1909067 R 195102 CDS NP_562554.1 18310620 989948 complement(1910442..1912217) 1 NC_003366.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 1912217 ntpA 989948 ntpA Clostridium perfringens str. 13 V-type ATP synthase subunit A NP_562554.1 1910442 R 195102 CDS NP_562555.1 18310621 989949 complement(1912234..1912551) 1 NC_003366.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit F 1912551 ntpF 989949 ntpF Clostridium perfringens str. 13 V-type ATP synthase subunit F NP_562555.1 1912234 R 195102 CDS NP_562556.1 18310622 989950 complement(1912538..1913545) 1 NC_003366.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit C 1913545 ntpC 989950 ntpC Clostridium perfringens str. 13 V-type ATP synthase subunit C NP_562556.1 1912538 R 195102 CDS NP_562557.1 18310623 989951 complement(1913558..1914154) 1 NC_003366.1 similar to sp:ATPE_METJA ATP SYNTHASE, SUBUNIT E (EC 3.6.1.34).>pir:E64327 H+-transporting ATP synthase (EC 3.6.1.34) subunit E from Methanococcus jannaschii (206 aa); 34% identity in 197 aa overlap; V-type ATPase, E subunit 1914154 ntpE 989951 ntpE Clostridium perfringens str. 13 V-type ATPase, E subunit NP_562557.1 1913558 R 195102 CDS NP_562558.1 18310624 989952 complement(1914185..1914679) 1 NC_003366.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 1914679 ntpK 989952 ntpK Clostridium perfringens str. 13 V-type ATP synthase subunit K NP_562558.1 1914185 R 195102 CDS NP_562559.1 18310625 989953 complement(1914734..1916680) 1 NC_003366.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I 1916680 ntpI 989953 ntpI Clostridium perfringens str. 13 V-type ATP synthase subunit I NP_562559.1 1914734 R 195102 CDS NP_562560.1 18310626 989954 complement(1916667..1916993) 1 NC_003366.1 similar to sp:Y223_METJA HYPOTHETICAL PROTEIN MJ0223 from Methanococcus jannaschii (104 aa); 39.8% identity in 88 aa overlap; hypothetical protein 1916993 989954 CPE1644 Clostridium perfringens str. 13 hypothetical protein NP_562560.1 1916667 R 195102 CDS NP_562561.1 18310627 989955 complement(1917270..1918949) 1 NC_003366.1 similar to gpu:AP001517_74 Mg-protoporphyrin IX monomethyl ester oxidative cyclas from Bacillus halodurans (592 aa); 39.4% identity in 503 aa overlap; radical SAM domain-containing protein 1918949 989955 CPE1645 Clostridium perfringens str. 13 radical SAM domain-containing protein NP_562561.1 1917270 R 195102 CDS NP_562562.1 18310628 989956 complement(1918849..1919451) 1 NC_003366.1 no significant homology; hypothetical protein 1919451 989956 CPE1646 Clostridium perfringens str. 13 hypothetical protein NP_562562.1 1918849 R 195102 CDS NP_562563.1 18310629 989957 complement(1919598..1920884) 1 NC_003366.1 partially similar to gp:AF226444_1 lipoprotein GNA2132 from Neisseria meningitidis (486 aa); 27.5% identity in 204 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1920884 989957 CPE1647 Clostridium perfringens str. 13 hypothetical protein NP_562563.1 1919598 R 195102 CDS NP_562564.1 18310630 989958 1921032..1922561 1 NC_003366.1 similar to sp:SP5B_BACSU STAGE V SPORULATION PROTEIN B from Bacillus subtilis (518 aa); 23.9% identity in 493 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; stage V sporulation protein B 1922561 spoVB 989958 spoVB Clostridium perfringens str. 13 stage V sporulation protein B NP_562564.1 1921032 D 195102 CDS NP_562565.1 18310631 989959 complement(1922655..1923455) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 1923455 989959 CPE1649 Clostridium perfringens str. 13 hypothetical protein NP_562565.1 1922655 R 195102 CDS NP_562566.1 18310632 989960 complement(1923565..1924407) 1 NC_003366.1 similar to gpu:AE004229_1 conserved hypothetical protein from Vibrio cholera (298 aa); 34.9% identity in 281 aa overlap; hypothetical protein 1924407 989960 CPE1650 Clostridium perfringens str. 13 hypothetical protein NP_562566.1 1923565 R 195102 CDS NP_562567.1 18310633 989961 complement(1924419..1924922) 1 NC_003366.1 similar to pir:G70443 conserved hypothetical protein aq_1660 from Aquifex aeolicus (172 aa); 49.4% identity in 162 aa overlap; hypothetical protein 1924922 989961 CPE1651 Clostridium perfringens str. 13 hypothetical protein NP_562567.1 1924419 R 195102 CDS NP_562568.1 18310634 989962 1925171..1926172 1 NC_003366.1 partially similar to pir:H72357 hypothetical protein TM0599 from Thermotoga maritima (strain MSB8) (546 aa); 32% identity in 275 aa overlap; hypothetical protein 1926172 989962 CPE1652 Clostridium perfringens str. 13 hypothetical protein NP_562568.1 1925171 D 195102 CDS NP_562569.1 18310635 989963 complement(1926200..1926550) 1 NC_003366.1 no significant homology N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 1926550 989963 CPE1653 Clostridium perfringens str. 13 hypothetical protein NP_562569.1 1926200 R 195102 CDS NP_562570.1 18310636 989964 1926770..1927240 1 NC_003366.1 similar to gpu:AE004098_5 transcriptional regulator AsnC from Vibrio cholerae (153 aa); 46.6% identity in 131 aa overlap; AsnC family; AsnC family transcriptional regulator 1927240 989964 CPE1654 Clostridium perfringens str. 13 AsnC family transcriptional regulator NP_562570.1 1926770 D 195102 CDS NP_562571.1 18310637 989965 1927347..1927550 1 NC_003366.1 similar to gpu:AP001518_176 BH3345 gene product from Bacillus halodurans (75 aa); 59.6% identity in 57 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 1927550 989965 CPE1655 Clostridium perfringens str. 13 hypothetical protein NP_562571.1 1927347 D 195102 CDS NP_562572.1 18310638 989966 complement(1927598..1929343) 1 NC_003366.1 partially similar to sp:PPCK_ECOLI PHOSPHOENOLPYRUVATE CARBOXYKINASE [ATP] (EC 4.1.1.49) from Escherichia coli (540 aa); 30.4% identity in 194 aa overlap; hypothetical protein 1929343 989966 CPE1656 Clostridium perfringens str. 13 hypothetical protein NP_562572.1 1927598 R 195102 CDS NP_562573.1 18310639 989967 1929544..1930398 1 NC_003366.1 similar to pir:T44344 late competence protein homolog comEC from Bacillus halodurans (266 aa); 33.5% identity in 242 aa overlap. N-terminal signal sequence was found by PSORT; late competence protein 1930398 comEC 989967 comEC Clostridium perfringens str. 13 late competence protein NP_562573.1 1929544 D 195102 CDS NP_562574.1 18310640 989968 complement(1930455..1931138) 1 NC_003366.1 no significant homology; hypothetical protein 1931138 989968 CPE1658 Clostridium perfringens str. 13 hypothetical protein NP_562574.1 1930455 R 195102 CDS NP_562575.1 18310641 989969 1931324..1931542 1 NC_003366.1 similar to gpu:AE004281_9 ferrous iron transport protein A from Vibrio cholerae (76 aa); 40.6% identity in 69 aa overlap; ferrous iron transport protein A 1931542 feoA 989969 feoA Clostridium perfringens str. 13 ferrous iron transport protein A NP_562575.1 1931324 D 195102 CDS NP_562576.1 18310642 989970 1931580..1933343 1 NC_003366.1 similar to pir:C69549 iron (II) transporter (feoB-2) homolog from Archaeoglobus fulgidus (563 aa); 38.9% identity in 579 aa overlap. 7 transmembrane regions were found by PSORT.; ferrous iron transport protein B 1933343 feoB 989970 feoB Clostridium perfringens str. 13 ferrous iron transport protein B NP_562576.1 1931580 D 195102 CDS NP_562577.1 18310643 989971 complement(1933553..1935250) 1 NC_003366.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1935250 argS 989971 argS Clostridium perfringens str. 13 arginyl-tRNA synthetase NP_562577.1 1933553 R 195102 CDS NP_562578.1 18310644 989972 1935732..1937240 1 NC_003366.1 similar to gpu:AP001511_282 exopolyphosphatase from Bacillus halodurans (518 aa); 25.9% identity in 495 aa overlap; Ppx/GppA phosphatase 1937240 989972 CPE1662 Clostridium perfringens str. 13 Ppx/GppA phosphatase NP_562578.1 1935732 D 195102 CDS NP_562579.1 18310645 989973 complement(1937338..1938552) 1 NC_003366.1 similar to gp:SCM10_29 lipoprotein from Streptomyces coelicolor A3(2) (384 aa); 29.7% identity in 256 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 1938552 989973 CPE1663 Clostridium perfringens str. 13 hypothetical protein NP_562579.1 1937338 R 195102 CDS NP_562580.1 18310646 989974 complement(1938718..1939338) 1 NC_003366.1 similar to pir:D70057 conserved hypothetical protein ywhC from Bacillus subtilis (219 aa); 38.7% identity in 155 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; M50 family peptidase 1939338 989974 CPE1664 Clostridium perfringens str. 13 M50 family peptidase NP_562580.1 1938718 R 195102 CDS NP_562581.1 18310647 989975 complement(1939543..1940922) 1 NC_003366.1 similar to pir:A69873 phosphate starvation inducible protein homolog ylaK from Bacillus subtilis (442 aa); 42% identity in 459 aa overlap; PhoH family protein 1940922 989975 CPE1665 Clostridium perfringens str. 13 PhoH family protein NP_562581.1 1939543 R 195102 CDS NP_562582.1 18310648 989976 1941144..1941758 1 NC_003366.1 partially similar to gp:AE002349_1 DNA polymerase III, epsilon subunit, from Chlamydia muridarum (250 aa); 31.5% identity in 111 aa overlap; hypothetical protein 1941758 989976 CPE1666 Clostridium perfringens str. 13 hypothetical protein NP_562582.1 1941144 D 195102 CDS NP_562583.1 18310649 989977 complement(1941795..1942124) 1 NC_003366.1 similar to gp:AE002154_2 single-strand binding protein from Ureaplasma urealyticum (166 aa); 25.7% identity in 105 aa overlap; single-strand binding protein 1942124 989977 CPE1667 Clostridium perfringens str. 13 single-strand binding protein NP_562583.1 1941795 R 195102 CDS NP_562584.1 18310650 989978 complement(1942405..1943835) 1 NC_003366.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1943835 purB 989978 purB Clostridium perfringens str. 13 adenylosuccinate lyase NP_562584.1 1942405 R 195102 CDS NP_562585.1 18310651 989979 complement(1944078..1944338) 1 NC_003366.1 similar to sp:PTHP_STAAU PHOSPHOCARRIER PROTEIN HPR (HISTIDINE-CONTAINING PROTEIN) from Staphylococcus aureus (88 aa); 56.5% identity in 69 aa overlap; phosphocarrier protein 1944338 hpr 989979 hpr Clostridium perfringens str. 13 phosphocarrier protein NP_562585.1 1944078 R 195102 CDS NP_562586.1 18310652 989980 complement(1944433..1945626) 1 NC_003366.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1945626 aspC 989980 aspC Clostridium perfringens str. 13 aspartate aminotransferase NP_562586.1 1944433 R 195102 CDS NP_562587.1 18310653 989981 complement(1945779..1946039) 1 NC_003366.1 similar to >gpu:AP001515_109 stage V sporulation protein S from Bacillus halodurans (86 aa); 81.4% identity in 86 aa overlap. N-terminal signal sequence was found by PSORT; stage V sporulation protein S 1946039 spoVS 989981 spoVS Clostridium perfringens str. 13 stage V sporulation protein S NP_562587.1 1945779 R 195102 CDS NP_562588.1 18310654 989982 complement(1946257..1947849) 1 NC_003366.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1947849 989982 CPE1672 Clostridium perfringens str. 13 phosphodiesterase NP_562588.1 1946257 R 195102 CDS NP_562589.1 18310655 989983 complement(1948140..1949198) 1 NC_003366.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1949198 recA 989983 recA Clostridium perfringens str. 13 recombinase A NP_562589.1 1948140 R 195102 CDS NP_562590.1 18310656 989984 complement(1949334..1949924) 1 NC_003366.1 similar to gpu:AP001515_120 phosphatidylglycerophosphate synthase from Bacillus halodurans (192 aa); 46.4% identity in 192 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1949924 989984 CPE1674 Clostridium perfringens str. 13 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase NP_562590.1 1949334 R 195102 CDS NP_562591.1 18310657 989985 complement(1949908..1951245) 1 NC_003366.1 similar to sp:Y849_AQUAE HYPOTHETICAL PROTEIN AQ_849 from Aquifex aeolicus (432 aa); 46% identity in 433 aa overlap; hypothetical protein 1951245 989985 CPE1675 Clostridium perfringens str. 13 hypothetical protein NP_562591.1 1949908 R 195102 CDS NP_562592.1 18310658 989986 complement(1951314..1953704) 1 NC_003366.1 similar to gp:AF177859_1 sporulation protein SpoIIIE from Sporosarcina ureae (780 aa); 44.4% identity in 768 aa overlap. 6 transmembrane regions were found by PSORT.; DNA translocase FtsK 1953704 spoIIIE 989986 spoIIIE Clostridium perfringens str. 13 DNA translocase FtsK NP_562592.1 1951314 R 195102 CDS NP_562593.1 18310659 989987 complement(1953836..1954579) 1 NC_003366.1 similar to gpu:AP001515_131 BH2397 gene product from Bacillus halodurans (256 aa); 59.7% identity in 196 aa overlap; Clp protease 1954579 989987 CPE1677 Clostridium perfringens str. 13 Clp protease NP_562593.1 1953836 R 195102 CDS NP_562594.1 18310660 989988 complement(1954579..1955775) 1 NC_003366.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase 1955775 dapG 989988 dapG Clostridium perfringens str. 13 aspartate kinase NP_562594.1 1954579 R 195102 CDS NP_562595.1 18310661 989989 complement(1955789..1956064) 1 NC_003366.1 similar to gpu:AP001515_138 BH2404 gene product from Bacillus halodurans (82 aa); 33.3% identity in 75 aa overlap; PRC-barrel domain-containing protein 1956064 989989 CPE1679 Clostridium perfringens str. 13 PRC-barrel domain-containing protein NP_562595.1 1955789 R 195102 CDS NP_562596.1 18310662 989990 complement(1956198..1958306) 1 NC_003366.1 similar to pir:S70691 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) alpha chain pnpA from Bacillus subtilis (705 aa); 55% identity in 693 aa overlap. 1 transmembrane region was found by PSORT; polynucleotide phosphorylase 1958306 pnpA 989990 pnpA Clostridium perfringens str. 13 polynucleotide phosphorylase NP_562596.1 1956198 R 195102 CDS NP_562597.1 18310663 989991 complement(1958398..1958661) 1 NC_003366.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1958661 rpsO 989991 rpsO Clostridium perfringens str. 13 30S ribosomal protein S15 NP_562597.1 1958398 R 195102 CDS NP_562598.1 18310664 989992 complement(1958777..1959706) 1 NC_003366.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 1959706 ribC 989992 ribC Clostridium perfringens str. 13 bifunctional riboflavin kinase/FMN adenylyltransferase NP_562598.1 1958777 R 195102 CDS NP_562599.1 18310665 989993 complement(1959710..1960594) 1 NC_003366.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1960594 truB 989993 truB Clostridium perfringens str. 13 tRNA pseudouridine synthase B NP_562599.1 1959710 R 195102 CDS NP_562600.1 18310666 989994 complement(1960598..1961551) 1 NC_003366.1 similar to pir:F70440 conserved hypothetical protein aq_1630 from Aquifex aeolicus (325 aa); 39.2% identity in 296 aa overlap; DHH subfamily 1 protein 1961551 989994 CPE1684 Clostridium perfringens str. 13 DHH subfamily 1 protein NP_562600.1 1960598 R 195102 CDS NP_562601.1 18310667 989995 complement(1961555..1961905) 1 NC_003366.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1961905 rbfA 989995 rbfA Clostridium perfringens str. 13 ribosome-binding factor A NP_562601.1 1961555 R 195102 CDS NP_562602.1 18310668 989996 complement(1961927..1963966) 1 NC_003366.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1963966 infB 989996 infB Clostridium perfringens str. 13 translation initiation factor IF-2 NP_562602.1 1961927 R 195102 CDS NP_562603.1 18310669 989997 complement(1963997..1964299) 1 NC_003366.1 similar to sp:YLXQ_BACSU PROBABLE RIBOSOMAL PROTEIN IN NUSA-INFB INTERGENIC REGION (ORF4) from Bacillus subtilis (100 aa); 30.7% identity in 88 aa overlap; ribosomal protein L7Ae family protein 1964299 989997 CPE1687 Clostridium perfringens str. 13 ribosomal protein L7Ae family protein NP_562603.1 1963997 R 195102 CDS NP_562604.1 18310670 989998 complement(1964292..1964558) 1 NC_003366.1 similar to gpu:AP001515_149 BH2415 gene product from Bacillus halodurans (91 aa); 50% identity in 88 aa overlap; hypothetical protein 1964558 989998 CPE1688 Clostridium perfringens str. 13 hypothetical protein NP_562604.1 1964292 R 195102 CDS NP_562605.1 18310671 989999 complement(1964586..1965686) 1 NC_003366.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1965686 nusA 989999 nusA Clostridium perfringens str. 13 transcription elongation factor NusA NP_562605.1 1964586 R 195102 CDS NP_562606.1 18310672 990000 complement(1965706..1966170) 1 NC_003366.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1966170 990000 CPE1690 Clostridium perfringens str. 13 hypothetical protein NP_562606.1 1965706 R 195102 CDS NP_562607.1 18310673 990001 complement(1966403..1970752) 1 NC_003366.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 1970752 polC 990001 polC Clostridium perfringens str. 13 DNA polymerase III PolC NP_562607.1 1966403 R 195102 CDS NP_562608.1 18310674 990002 complement(1970830..1971879) 1 NC_003366.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1971879 ispG 990002 ispG Clostridium perfringens str. 13 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase NP_562608.1 1970830 R 195102 CDS NP_562609.1 18310675 990003 complement(1971899..1972906) 1 NC_003366.1 similar to sp:YI21_SYNY3 HYPOTHETICAL 39.0 KDA PROTEIN SLR1821 from Synechocystis sp. (366 aa); 34.7% identity in 291 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 1972906 990003 CPE1693 Clostridium perfringens str. 13 hypothetical protein NP_562609.1 1971899 R 195102 CDS NP_562610.1 18310676 990004 complement(1972918..1974072) 1 NC_003366.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1974072 990004 CPE1694 Clostridium perfringens str. 13 1-deoxy-D-xylulose 5-phosphate reductoisomerase NP_562610.1 1972918 R 195102 CDS NP_562611.1 18310677 990005 complement(1974432..1975226) 1 NC_003366.1 similar to gpu:AP001515_156 phosphatidate cytidylyltransferase (EC 2.7.7.41) from Bacillus halodurans (264 aa); 34.7% identity in 239 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; phosphatidate cytidylyltransferase 1975226 cdsA 990005 cdsA Clostridium perfringens str. 13 phosphatidate cytidylyltransferase NP_562611.1 1974432 R 195102 CDS NP_562612.1 18310678 990006 complement(1975244..1976005) 1 NC_003366.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 1976005 uppS 990006 uppS Clostridium perfringens str. 13 undecaprenyl pyrophosphate synthase NP_562612.1 1975244 R 195102 CDS NP_562613.1 18310679 990007 complement(1976070..1976627) 1 NC_003366.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1976627 frr 990007 frr Clostridium perfringens str. 13 ribosome recycling factor NP_562613.1 1976070 R 195102 CDS NP_562614.1 18310680 990008 complement(1976641..1977354) 1 NC_003366.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1977354 pyrH 990008 pyrH Clostridium perfringens str. 13 uridylate kinase NP_562614.1 1976641 R 195102 CDS NP_562615.1 18310681 990009 complement(1977447..1978358) 1 NC_003366.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1978358 tsf 990009 tsf Clostridium perfringens str. 13 elongation factor Ts NP_562615.1 1977447 R 195102 CDS NP_562616.1 18310682 990010 complement(1978438..1979139) 1 NC_003366.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1979139 rpsB 990010 rpsB Clostridium perfringens str. 13 30S ribosomal protein S2 NP_562616.1 1978438 R 195102 CDS NP_562617.1 18310683 990011 complement(1979521..1980297) 1 NC_003366.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 1980297 990011 CPE1701 Clostridium perfringens str. 13 transcriptional repressor CodY NP_562617.1 1979521 R 195102 CDS NP_562618.1 18310684 990012 complement(1980439..1982541) 1 NC_003366.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1982541 topA 990012 topA Clostridium perfringens str. 13 DNA topoisomerase I NP_562618.1 1980439 R 195102 CDS NP_562619.1 18310685 990013 complement(1982586..1983668) 1 NC_003366.1 similar to gpu:AE004096_2 smf protein from Vibrio cholerae (371 aa); 39.3% identity in 275 aa overlap; DNA protecting protein DprA 1983668 smf 990013 smf Clostridium perfringens str. 13 DNA protecting protein DprA NP_562619.1 1982586 R 195102 CDS NP_562620.1 18310686 990014 complement(1983669..1985192) 1 NC_003366.1 similar to pir:G72368 comM protein from Thermotoga maritima (strain MSB8) (501 aa); 45% identity in 467 aa overlap; Mg chelatase-like protein 1985192 comM 990014 comM Clostridium perfringens str. 13 Mg chelatase-like protein NP_562620.1 1983669 R 195102 CDS NP_562621.1 18310687 990015 1985322..1985690 1 NC_003366.1 similar to pir:A82030 hypothetical protein NMA0341 from Neisseria meningitidis (group A strain Z2491) (115 aa); 28% identity in 100 aa overlap; hypothetical protein 1985690 990015 CPE1705 Clostridium perfringens str. 13 hypothetical protein NP_562621.1 1985322 D 195102 CDS NP_562622.1 18310688 990016 complement(1985691..1986509) 1 NC_003366.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1986509 rnhB 990016 rnhB Clostridium perfringens str. 13 ribonuclease HII NP_562622.1 1985691 R 195102 CDS NP_562623.1 18310689 990017 complement(1986525..1987370) 1 NC_003366.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 1987370 rbgA 990017 rbgA Clostridium perfringens str. 13 ribosomal biogenesis GTPase NP_562623.1 1986525 R 195102 CDS NP_562624.1 18310690 990018 complement(1987517..1987864) 1 NC_003366.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1987864 rplS 990018 rplS Clostridium perfringens str. 13 50S ribosomal protein L19 NP_562624.1 1987517 R 195102 CDS NP_562625.1 18310691 990019 complement(1987985..1988695) 1 NC_003366.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1988695 trmD 990019 trmD Clostridium perfringens str. 13 tRNA (guanine-N(1)-)-methyltransferase NP_562625.1 1987985 R 195102 CDS NP_562626.1 18310692 990020 complement(1988685..1989182) 1 NC_003366.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1989182 rimM 990020 rimM Clostridium perfringens str. 13 16S rRNA-processing protein RimM NP_562626.1 1988685 R 195102 CDS NP_562627.1 18310693 990021 complement(1989238..1989465) 1 NC_003366.1 similar to sp:Y696_BORBU HYPOTHETICAL PROTEIN BB0696 from Borrelia burgdorferi (82 aa); 55.3% identity in 76 aa overlap; hypothetical protein 1989465 990021 CPE1711 Clostridium perfringens str. 13 hypothetical protein NP_562627.1 1989238 R 195102 CDS NP_562628.1 18310694 990022 complement(1989509..1989754) 1 NC_003366.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1989754 rpsP 990022 rpsP Clostridium perfringens str. 13 30S ribosomal protein S16 NP_562628.1 1989509 R 195102 CDS NP_562629.1 18310695 990023 complement(1989788..1991146) 1 NC_003366.1 similar to gpu:AP001515_218 signal recognition particle from Bacillus halodurans (451 aa); 56.4% identity in 443 aa overlap; signal recognition particle protein 1991146 ffh 990023 ffh Clostridium perfringens str. 13 signal recognition particle protein NP_562629.1 1989788 R 195102 CDS NP_562630.1 18310696 990024 complement(1991158..1991496) 1 NC_003366.1 similar to gpu:AP001515_219 BH2485 gene product from Bacillus halodurans (109 aa); 43.8% identity in 96 aa overlap; DNA-binding protein 1991496 990024 CPE1714 Clostridium perfringens str. 13 DNA-binding protein NP_562630.1 1991158 R 195102 CDS NP_562631.1 18310697 990025 complement(1991673..1992587) 1 NC_003366.1 similar to gpu:AP001515_220 signal recognition particle (docking protein) from Bacillus halodurans (330 aa); 48.5% identity in 297 aa overlap; signal recognition particle-docking protein FtsY 1992587 ftsY 990025 ftsY Clostridium perfringens str. 13 signal recognition particle-docking protein FtsY NP_562631.1 1991673 R 195102 CDS NP_562632.1 18310698 990026 complement(1992601..1996158) 1 NC_003366.1 similar to sp:SMC_BACSU CHROMOSOME PARTITION PROTEIN SMC from Bacillus subtilis (1186 aa); 35.5% identity in 1185 aa overlap; chromosome segregation protein SMC 1996158 smc 990026 smc Clostridium perfringens str. 13 chromosome segregation protein SMC NP_562632.1 1992601 R 195102 CDS NP_562633.1 18310699 990027 complement(1996363..1997436) 1 NC_003366.1 similar to pir:A72295 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (317 aa); 35.5% identity in 273 aa overlap; radical SAM domain-containing protein 1997436 990027 CPE1717 Clostridium perfringens str. 13 radical SAM domain-containing protein NP_562633.1 1996363 R 195102 CDS NP_562634.1 18310700 990028 complement(1997415..1998128) 1 NC_003366.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1998128 rnc 990028 rnc Clostridium perfringens str. 13 ribonuclease III NP_562634.1 1997415 R 195102 CDS NP_562635.1 18310701 990029 complement(1998227..1998457) 1 NC_003366.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1998457 acpP 990029 acpP Clostridium perfringens str. 13 acyl carrier protein NP_562635.1 1998227 R 195102 CDS NP_562636.1 18310702 990030 complement(1998534..1999166) 1 NC_003366.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1999166 plsX 990030 plsX Clostridium perfringens str. 13 glycerol-3-phosphate acyltransferase PlsX NP_562636.1 1998534 R 195102 CDS NP_562637.1 18310703 990031 complement(1999139..1999504) 1 NC_003366.1 similar to sp|O65984|PLSX_CLOTS FATTY ACID/PHOSPHOLIPID SYNTHESIS PROTEIN PLSX from Thermoanaerobacterium thermosaccharolyticum (333 aa); 42.9% identity in 112 aa overlap. Probably truncated by frameshift mutation; fatty acid/phospholipid synthesis protein 1999504 plsX 990031 plsX Clostridium perfringens str. 13 fatty acid/phospholipid synthesis protein NP_562637.1 1999139 R 195102 CDS NP_562638.1 18310704 990032 complement(1999613..1999795) 1 NC_003366.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1999795 rpmF 990032 rpmF Clostridium perfringens str. 13 50S ribosomal protein L32 NP_562638.1 1999613 R 195102 CDS NP_562639.1 18310705 990033 complement(1999811..2000206) 1 NC_003366.1 similar to prf:2220209C ORF X from Clostridium acetobutylicum (158 aa); 39.6% identity in 154 aa overlap; hypothetical protein 2000206 990033 CPE1723 Clostridium perfringens str. 13 hypothetical protein NP_562639.1 1999811 R 195102 CDS NP_562640.1 18310706 990034 complement(2000425..2001621) 1 NC_003366.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2001621 ackB 990034 ackB Clostridium perfringens str. 13 acetate kinase NP_562640.1 2000425 R 195102 CDS NP_562641.1 18310707 990035 complement(2001712..2002719) 1 NC_003366.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 2002719 eutD 990035 eutD Clostridium perfringens str. 13 phosphotransacetylase NP_562641.1 2001712 R 195102 CDS NP_562642.2 229027857 990036 2002948..2004156 1 NC_003366.1 similar to pir:B69875 conserved hypothetical protein ylbM from Bacillus subtilis (415 aa); 37.7% identity in 382 aa overlap; hypothetical protein 2004156 990036 CPE1726 Clostridium perfringens str. 13 hypothetical protein NP_562642.2 2002948 D 195102 CDS NP_562643.1 18310709 990037 2004221..2005381 1 NC_003366.1 similar to pir:G69874 hypothetical protein ylbJ from Bacillus subtilis (408 aa); 24.7% identity in 320 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; hypothetical protein 2005381 990037 CPE1727 Clostridium perfringens str. 13 hypothetical protein NP_562643.1 2004221 D 195102 CDS NP_562644.1 18310710 990038 complement(2005364..2005894) 1 NC_003366.1 similar to pir:T44704 hypothetical protein MLCB1243.13 from Mycobacterium leprae (245 aa); 28% identity in 168 aa overlap; hypothetical protein 2005894 990038 CPE1728 Clostridium perfringens str. 13 hypothetical protein NP_562644.1 2005364 R 195102 CDS NP_562645.1 18310711 990039 complement(2005903..2006397) 1 NC_003366.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 2006397 coaD 990039 coaD Clostridium perfringens str. 13 phosphopantetheine adenylyltransferase NP_562645.1 2005903 R 195102 CDS NP_562646.1 18310712 990040 complement(2006399..2006956) 1 NC_003366.1 similar to gpu:AP001516_19 BH2590 gene product from Bacillus halodurans (189 aa); 35.3% identity in 184 aa overlap; hypothetical protein 2006956 990040 CPE1730 Clostridium perfringens str. 13 hypothetical protein NP_562646.1 2006399 R 195102 CDS NP_562647.1 18310713 990041 complement(2007021..2009093) 1 NC_003366.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 2009093 recG 990041 recG Clostridium perfringens str. 13 ATP-dependent DNA helicase RecG NP_562647.1 2007021 R 195102 CDS NP_562648.1 18310714 990042 complement(2009246..2010892) 1 NC_003366.1 similar to pir:E69879 conserved hypothetical protein yloV from Bacillus subtilis (553 aa); 44.3% identity in 548 aa overlap; DAK2 domain-containing protein 2010892 990042 CPE1732 Clostridium perfringens str. 13 DAK2 domain-containing protein NP_562648.1 2009246 R 195102 CDS NP_562649.1 18310715 990043 complement(2010906..2011253) 1 NC_003366.1 similar to pir:D69879 alkaline-shock protein homolog yloU from Bacillus subtilis (120 aa); 41.3% identity in 109 aa overlap; hypothetical protein 2011253 990043 CPE1733 Clostridium perfringens str. 13 hypothetical protein NP_562649.1 2010906 R 195102 CDS NP_562650.1 18310716 990044 2011513..2011767 1 NC_003366.1 similar to sp:R28A_STRCO 50S RIBOSOMAL PROTEIN L28- from Streptomyces coelicolor A3(2) (63 aa); 58.6% identity in 58 aa overlap; 50S ribosomal protein L28 2011767 rpmB 990044 rpmB Clostridium perfringens str. 13 50S ribosomal protein L28 NP_562650.1 2011513 D 195102 CDS NP_562651.1 18310717 990045 complement(2011946..2012575) 1 NC_003366.1 similar to pir:C69879 hypothetical protein yloS from Bacillus subtilis (214 aa); 34.6% identity in 205 aa overlap; thiamine pyrophosphokinase 2012575 990045 CPE1735 Clostridium perfringens str. 13 thiamine pyrophosphokinase NP_562651.1 2011946 R 195102 CDS NP_562652.1 18310718 990046 complement(2012577..2013230) 1 NC_003366.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 2013230 990046 CPE1736 Clostridium perfringens str. 13 ribulose-phosphate 3-epimerase NP_562652.1 2012577 R 195102 CDS NP_562653.1 18310719 990047 complement(2013230..2014093) 1 NC_003366.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 2014093 990047 CPE1737 Clostridium perfringens str. 13 ribosome-associated GTPase NP_562653.1 2013230 R 195102 CDS NP_562654.1 18310720 990048 complement(2014330..2016387) 1 NC_003366.1 similar to pir:T35491 probable serine/threonine-specific protein kinase pkaF from Streptomyces coelicolor (667 aa); 29.8% identity in 580 aa overlap. 1 transmembrane region was found by PSORT; pobable serine/threonine protein kinase 2016387 990048 CPE1738 Clostridium perfringens str. 13 pobable serine/threonine protein kinase NP_562654.1 2014330 R 195102 CDS NP_562655.1 18310721 990049 complement(2016389..2017108) 1 NC_003366.1 similar to gpu:AP001515_239 BH2505 gene product from Bacillus halodurans (249 aa); 40.6% identity in 229 aa overlap; protein phosphatase 2C 2017108 990049 CPE1739 Clostridium perfringens str. 13 protein phosphatase 2C NP_562655.1 2016389 R 195102 CDS NP_562656.1 18310722 990050 complement(2017121..2018164) 1 NC_003366.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2018164 990050 CPE1740 Clostridium perfringens str. 13 ribosomal RNA large subunit methyltransferase N NP_562656.1 2017121 R 195102 CDS NP_562657.1 18310723 990051 complement(2018196..2019524) 1 NC_003366.1 similar to gpu:AP001515_241 BH2507 gene product from Bacillus halodurans (450 aa); 39.8% identity in 437 aa overlap; RNA-binding Sun protein 2019524 990051 CPE1741 Clostridium perfringens str. 13 RNA-binding Sun protein NP_562657.1 2018196 R 195102 CDS NP_562658.1 18310724 990052 complement(2019535..2020230) 1 NC_003366.1 similar to pir:H72244 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (230 aa); 50.7% identity in 221 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 2020230 990052 CPE1742 Clostridium perfringens str. 13 hypothetical protein NP_562658.1 2019535 R 195102 CDS NP_562659.1 18310725 990053 complement(2020248..2021177) 1 NC_003366.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 2021177 fmt 990053 fmt Clostridium perfringens str. 13 methionyl-tRNA formyltransferase NP_562659.1 2020248 R 195102 CDS NP_562660.1 18310726 990054 complement(2021197..2021640) 1 NC_003366.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 2021640 def 990054 def Clostridium perfringens str. 13 peptide deformylase NP_562660.1 2021197 R 195102 CDS NP_562661.1 18310727 990055 complement(2021654..2023849) 1 NC_003366.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 2023849 990055 CPE1745 Clostridium perfringens str. 13 primosome assembly protein PriA NP_562661.1 2021654 R 195102 CDS NP_562662.1 18310728 990056 complement(2023888..2025075) 1 NC_003366.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 2025075 990056 CPE1746 Clostridium perfringens str. 13 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase NP_562662.1 2023888 R 195102 CDS NP_562663.1 18310729 990057 complement(2025081..2025293) 1 NC_003366.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 2025293 rpoZ 990057 rpoZ Clostridium perfringens str. 13 DNA-directed RNA polymerase subunit omega NP_562663.1 2025081 R 195102 CDS NP_562664.1 18310730 990058 complement(2025274..2025933) 1 NC_003366.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 2025933 gmk 990058 gmk Clostridium perfringens str. 13 guanylate kinase NP_562664.1 2025274 R 195102 CDS NP_562665.1 18310731 990059 complement(2025914..2026183) 1 NC_003366.1 similar to gpu:AP001515_247 BH2513 gene product from Bacillus halodurans (87 aa); 88.8% identity in 80 aa overlap; hypothetical protein 2026183 990059 CPE1749 Clostridium perfringens str. 13 hypothetical protein NP_562665.1 2025914 R 195102 CDS NP_562666.1 18310732 990060 complement(2026197..2027081) 1 NC_003366.1 similar to gpu:AP001515_248 BH2514 gene product from Bacillus halodurans (294 aa); 38.4% identity in 294 aa overlap; hypothetical protein 2027081 990060 CPE1750 Clostridium perfringens str. 13 hypothetical protein NP_562666.1 2026197 R 195102 CDS NP_562667.1 18310733 990061 complement(2027301..2028698) 1 NC_003366.1 similar to pir:B70219 conserved hypothetical protein BBB22 from Borrelia burgdorferi (451 aa); 49.1% identity in 436 aa overlap. 12 transmembrane regions were found by PSORT.; hypothetical protein 2028698 990061 CPE1751 Clostridium perfringens str. 13 hypothetical protein NP_562667.1 2027301 R 195102 CDS NP_562668.1 18310734 990062 complement(2028956..2029939) 1 NC_003366.1 similar to gpu:AP001512_211 L-asparaginase from Bacillus halodurans (322 aa); 48.2% identity in 141 aa overlap; L-asparaginase 2029939 ansA 990062 ansA Clostridium perfringens str. 13 L-asparaginase NP_562668.1 2028956 R 195102 CDS NP_562669.1 18310735 990063 complement(2030290..2031765) 1 NC_003366.1 similar to gpu:AP001512_232 stage IV sporulation protein A (spore cortex formation and coat assembly) from Bacillus halodurans (492 aa); 48.8% identity in 490 aa overlap; stage IV sporulation protein A 2031765 spoIVA 990063 spoIVA Clostridium perfringens str. 13 stage IV sporulation protein A NP_562669.1 2030290 R 195102 CDS NP_562670.1 18310736 990064 complement(2032094..2033089) 1 NC_003366.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 2033089 gpsA 990064 gpsA Clostridium perfringens str. 13 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase NP_562670.1 2032094 R 195102 CDS NP_562671.1 18310737 990065 complement(2033094..2034410) 1 NC_003366.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2034410 engA 990065 engA Clostridium perfringens str. 13 GTP-binding protein EngA NP_562671.1 2033094 R 195102 CDS NP_562672.1 18310738 990066 complement(2034413..2035750) 1 NC_003366.1 similar to gp:D90904_134 hypothetical protein from Synechocystis sp. (451 aa); 37% identity in 440 aa overlap; hypothetical protein 2035750 990066 CPE1756 Clostridium perfringens str. 13 hypothetical protein NP_562672.1 2034413 R 195102 CDS NP_562673.1 18310739 990067 complement(2036077..2037792) 1 NC_003366.1 similar to gpu:AP001517_278 two-component sensor histidine kinase involved in phosphate regulation from Bacillus halodurans (589 aa); 33.8% identity in 547 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; sensory box histidine kinase 2037792 990067 CPE1757 Clostridium perfringens str. 13 sensory box histidine kinase NP_562673.1 2036077 R 195102 CDS NP_562674.1 18310740 990068 complement(2037806..2038510) 1 NC_003366.1 similar to prf:2022232K sigG downstream ORF W from Clostridium acetobutylicum (147 aa); 45.1% identity in 133 aa overlap; hypothetical protein 2038510 990068 CPE1758 Clostridium perfringens str. 13 hypothetical protein NP_562674.1 2037806 R 195102 CDS NP_562675.1 18310741 990069 complement(2038676..2039125) 1 NC_003366.1 similar to sp:YORV_CLOAB HYPOTHETICAL 15.2 KDA PROTEIN IN SIGG 3'REGION (ORF V) from Clostridium acetobutylicum (129 aa); 75.7% identity in 111 aa overlap; transcriptional regulator NrdR 2039125 nrdR 990069 nrdR Clostridium perfringens str. 13 transcriptional regulator NrdR NP_562675.1 2038676 R 195102 CDS NP_562676.1 18310742 990070 complement(2039187..2039459) 1 NC_003366.1 similar to sp:YORU_CLOAB HYPOTHETICAL 9.6 KDA PROTEIN IN SIGG 3'REGION (ORF U) from Clostridium acetobutylicum (87 aa); 54.9% identity in 71 aa overlap; hypothetical protein 2039459 990070 CPE1760 Clostridium perfringens str. 13 hypothetical protein NP_562676.1 2039187 R 195102 CDS NP_562677.1 18310743 990071 complement(2039600..2040412) 1 NC_003366.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin; sporulation sigma factor SigG 2040412 sigG 990071 sigG Clostridium perfringens str. 13 sporulation sigma factor SigG NP_562677.1 2039600 R 195102 CDS NP_562678.1 18310744 990072 complement(2040448..2041155) 1 NC_003366.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; sporulation sigma factor SigE 2041155 sigE 990072 sigE Clostridium perfringens str. 13 sporulation sigma factor SigE NP_562678.1 2040448 R 195102 CDS NP_562679.1 18310745 990073 complement(2041169..2041975) 1 NC_003366.1 similar to sp:SP2G_CLOAB PROBABLE SPORULATION SIGMA-E FACTOR PROCESSING PEPTIDASE (EC 3.4.23.-) from Clostridium acetobutylicum (266 aa); 28.4% identity in 268 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; sporulation factor SpoIIGA 2041975 spoIIGA 990073 spoIIGA Clostridium perfringens str. 13 sporulation factor SpoIIGA NP_562679.1 2041169 R 195102 CDS NP_562680.1 18310746 990074 complement(2042013..2042207) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2042207 990074 CPE1764 Clostridium perfringens str. 13 hypothetical protein NP_562680.1 2042013 R 195102 CDS NP_562681.1 18310747 990075 complement(2042380..2043525) 1 NC_003366.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 2043525 ftsZ 990075 ftsZ Clostridium perfringens str. 13 cell division protein FtsZ NP_562681.1 2042380 R 195102 CDS NP_562682.1 18310748 990076 complement(2043539..2044777) 1 NC_003366.1 similar to gp:AF218835_4 FtsA ortholog from Clostridium perfringens (109 aa); 96.3% identity in 109 aa overlap; cell division protein FtsA 2044777 ftsA 990076 ftsA Clostridium perfringens str. 13 cell division protein FtsA NP_562682.1 2043539 R 195102 CDS NP_562683.1 18310749 990077 complement(2044855..2045907) 1 NC_003366.1 similar to gp:AF218835_3 PilT from Clostridium perfringens (350 aa); 94.9% identity in 350 aa overlap; twitching motility protein PilT 2045907 pilT 990077 pilT Clostridium perfringens str. 13 twitching motility protein PilT NP_562683.1 2044855 R 195102 CDS NP_562684.1 18310750 990078 complement(2046088..2046789) 1 NC_003366.1 sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment; sporulation sigma factor SigK 2046789 sigK 990078 sigK Clostridium perfringens str. 13 sporulation sigma factor SigK NP_562684.1 2046088 R 195102 CDS NP_562685.1 18310751 990079 complement(2046852..2048519) 1 NC_003366.1 similar to gp:AF218835_1 penicillin-binding protein from Clostridium perfringens (212 aa); 98.1% identity in 212 aa overlap. N-terminal signal sequence was found by PSORT; stage V sporulation protein D 2048519 spoVD 990079 spoVD Clostridium perfringens str. 13 stage V sporulation protein D NP_562685.1 2046852 R 195102 CDS NP_562686.1 18310752 990080 complement(2048632..2049258) 1 NC_003366.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2049258 990080 CPE1770 Clostridium perfringens str. 13 uridine kinase NP_562686.1 2048632 R 195102 CDS NP_562687.1 18310753 990081 complement(2049258..2050487) 1 NC_003366.1 similar to pir:H69979 proteinase homolog yrrO from Bacillus subtilis (422 aa); 45.8% identity in 404 aa overlap; peptidase U32 2050487 990081 CPE1771 Clostridium perfringens str. 13 peptidase U32 NP_562687.1 2049258 R 195102 CDS NP_562688.1 18310754 990082 complement(2050493..2051137) 1 NC_003366.1 similar to pir:F69979 caffeoyl-CoA O-methyltransferase homolog yrrM from Bacillus subtilis (217 aa); 39.7% identity in 209 aa overlap; O-methyltransferase 2051137 990082 CPE1772 Clostridium perfringens str. 13 O-methyltransferase NP_562688.1 2050493 R 195102 CDS NP_562689.1 18310755 990083 complement(2051153..2052181) 1 NC_003366.1 similar to pir:A70368 conserved hypothetical protein aq_775 from Aquifex aeolicus (326 aa); 40.7% identity in 295 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2052181 990083 CPE1773 Clostridium perfringens str. 13 hypothetical protein NP_562689.1 2051153 R 195102 CDS NP_562690.1 18310756 990084 complement(2052324..2054156) 1 NC_003366.1 similar to sp:TYPA_HELPY GTP-BINDING PROTEIN TYPA/BIPA HOMOLOG from Helicobacter pylori (strain 26695) (599 aa); 58.4% identity in 596 aa overlap; GTP-binding protein TypA 2054156 typA 990084 typA Clostridium perfringens str. 13 GTP-binding protein TypA NP_562690.1 2052324 R 195102 CDS NP_562691.1 18310757 990085 complement(2054313..2056058) 1 NC_003366.1 similar to gpu:AP001515_132 BH2398 gene product from Bacillus halodurans (555 aa); 54.7% identity in 554 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 2056058 990085 CPE1775 Clostridium perfringens str. 13 hypothetical protein NP_562691.1 2054313 R 195102 CDS NP_562692.1 18310758 990086 complement(2056051..2056503) 1 NC_003366.1 similar to gp:AF095597_1 ferric uptake regulator homolog from Staphylococcus aureus (149 aa); 45.3% identity in 128 aa overlap; FurR family; FUR family transcriptional regulator 2056503 990086 CPE1776 Clostridium perfringens str. 13 FUR family transcriptional regulator NP_562692.1 2056051 R 195102 CDS NP_562693.1 18310759 990087 complement(2056524..2056778) 1 NC_003366.1 similar to gpu:AP001511_159 BH1270 gene product from Bacillus halodurans (93 aa); 46.1% identity in 76 aa overlap; hypothetical protein 2056778 990087 CPE1777 Clostridium perfringens str. 13 hypothetical protein NP_562693.1 2056524 R 195102 CDS NP_562694.1 18310760 990088 complement(2056794..2057207) 1 NC_003366.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 2057207 990088 CPE1778 Clostridium perfringens str. 13 Holliday junction resolvase-like protein NP_562694.1 2056794 R 195102 CDS NP_562695.1 18310761 990089 complement(2057255..2057512) 1 NC_003366.1 similar to gpu:AP001511_157 BH1268 gene product from Bacillus halodurans (90 aa); 52.5% identity in 80 aa overlap. S.D. unclear; hypothetical protein 2057512 990089 CPE1779 Clostridium perfringens str. 13 hypothetical protein NP_562695.1 2057255 R 195102 CDS NP_562696.1 18310762 990090 complement(2057656..2060295) 1 NC_003366.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2060295 alaS 990090 alaS Clostridium perfringens str. 13 alanyl-tRNA synthetase NP_562696.1 2057656 R 195102 CDS NP_562697.1 18310763 990091 complement(2060888..2061925) 1 NC_003366.1 partially similar to gpu:AP001511_155 BH1266 gene product from Bacillus halodurans (358 aa); 24.7% identity in 186 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; hypothetical protein 2061925 990091 CPE1781 Clostridium perfringens str. 13 hypothetical protein NP_562697.1 2060888 R 195102 CDS NP_562698.1 18310764 990092 complement(2061951..2062424) 1 NC_003366.1 partially similar to pir:H69208 hypothetical protein MTH815 from Methanobacterium thermoautotrophicum (strain Delta H) (99 aa); 32.3% identity in 62 aa overlap; PRC-barrel domain-containing protein 2062424 990092 CPE1782 Clostridium perfringens str. 13 PRC-barrel domain-containing protein NP_562698.1 2061951 R 195102 CDS NP_562699.1 18310765 990093 complement(2062713..2063765) 1 NC_003366.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2063765 mnmA 990093 mnmA Clostridium perfringens str. 13 tRNA-specific 2-thiouridylase MnmA NP_562699.1 2062713 R 195102 CDS NP_562700.1 18310766 990094 complement(2063817..2064245) 1 NC_003366.1 similar to pir:A69273 nifU protein (nifU-1/nifU-2) from Archaeoglobus fulgidus (153 aa); 60.7% identity in 122 aa overlap; nitrogen fixation protein 2064245 nifU 990094 nifU Clostridium perfringens str. 13 nitrogen fixation protein NP_562700.1 2063817 R 195102 CDS NP_562701.1 18310767 990095 complement(2064248..2065444) 1 NC_003366.1 similar to prf:2421289A Cys desulfurase from Ruminococcus flavefaciens (396 aa); 55.4% identity in 392 aa overlap; cysteine desulfurase 2065444 nifS 990095 nifS Clostridium perfringens str. 13 cysteine desulfurase NP_562701.1 2064248 R 195102 CDS NP_562702.1 18310768 990096 complement(2065437..2065823) 1 NC_003366.1 similar to gpu:AP001511_148 BH1259 gene product from Bacillus halodurans (139 aa); 45.4% identity in 108 aa overlap; hypothetical protein 2065823 990096 CPE1786 Clostridium perfringens str. 13 hypothetical protein NP_562702.1 2065437 R 195102 CDS NP_562703.1 18310769 990097 complement(2066029..2067255) 1 NC_003366.1 similar to pir:D69981 conserved hypothetical protein yrvN from Bacillus subtilis (421 aa); 45.1% identity in 415 aa overlap; recombination factor protein RarA 2067255 990097 CPE1787 Clostridium perfringens str. 13 recombination factor protein RarA NP_562703.1 2066029 R 195102 CDS NP_562704.1 18310770 990098 complement(2067478..2068377) 1 NC_003366.1 similar to gp:AB017192_14 hypothetical 34.4-kDa protein from Clostridium perfringens (299 aa); 99% identity in 299 aa overlap; hypothetical protein 2068377 990098 CPE1788 Clostridium perfringens str. 13 hypothetical protein NP_562704.1 2067478 R 195102 CDS NP_562705.1 18310771 990099 complement(2068563..2068991) 1 NC_003366.1 similar to gp:AB017192_13 hypothetical 15.6-kDa protein from Clostridium perfringens (142 aa); 97.9% identity in 142 aa overlap; hypothetical protein 2068991 990099 CPE1789 Clostridium perfringens str. 13 hypothetical protein NP_562705.1 2068563 R 195102 CDS NP_562706.1 18310772 990100 complement(2068994..2069965) 1 NC_003366.1 similar to sp:MOAA_CLOPE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A from Clostridium perfringens (323 aa); 91.6% identity in 323 aa overlap; molybdenum cofactor biosynthesis protein A 2069965 moaA 990100 moaA Clostridium perfringens str. 13 molybdenum cofactor biosynthesis protein A NP_562706.1 2068994 R 195102 CDS NP_562707.1 18310773 990101 complement(2070069..2071082) 1 NC_003366.1 similar to gp:AB017192_11 molybdopterin biosynthesis protein from Clostridium perfringens (337 aa); 90.2% identity in 337 aa overlap; molybdopterin biosynthesis protein 2071082 990101 CPE1791 Clostridium perfringens str. 13 molybdopterin biosynthesis protein NP_562707.1 2070069 R 195102 CDS NP_562708.1 18310774 990102 complement(2071201..2071749) 1 NC_003366.1 similar to gp:AB017192_10 molybdopterin-guanine dinucleotide biosynthesis protein A from Clostridium perfringens (198 aa); 92.4% identity in 198 aa overlap; molybdopterin-guanine dinucleotide biosynthesis protein MobA 2071749 990102 CPE1792 Clostridium perfringens str. 13 molybdopterin-guanine dinucleotide biosynthesis protein MobA NP_562708.1 2071201 R 195102 CDS NP_562709.1 18310775 990103 complement(2071842..2073062) 1 NC_003366.1 similar to gp:AB017192_9 molybdenum cofactor biosynthesis protein from Clostridium perfringens (406 aa); 96.6% identity in 406 aa overlap; molybdenum cofactor biosynthesis protein MoeA 2073062 990103 CPE1793 Clostridium perfringens str. 13 molybdenum cofactor biosynthesis protein MoeA NP_562709.1 2071842 R 195102 CDS NP_562710.1 18310776 990104 complement(2073401..2073883) 1 NC_003366.1 similar to gp:AB017192_8 molybdopterin-guanine dinucleotide biosynthesis protein B from Clostridium perfringens (160 aa); 97.5% identity in 160 aa overlap; molybdopterin-guanine dinucleotide biosynthesis protein MobB 2073883 mobB 990104 mobB Clostridium perfringens str. 13 molybdopterin-guanine dinucleotide biosynthesis protein MobB NP_562710.1 2073401 R 195102 CDS NP_562711.1 18310777 990105 complement(2073974..2075197) 1 NC_003366.1 similar to gp:AB017192_7 nitrate reductase NADH oxydase subunit from Clostridium perfringens (407 aa); 90.7% identity in 407 aa overlap. N-terminal signal sequence was found by PSORT; nitrate reductase, NADH oxidase subunit 2075197 990105 CPE1795 Clostridium perfringens str. 13 nitrate reductase, NADH oxidase subunit NP_562711.1 2073974 R 195102 CDS NP_562712.1 18310778 990106 complement(2075199..2075612) 1 NC_003366.1 similar to gp:AB017192_6 nitrate reductase electron transfer subunit from Clostridium perfringens (137 aa); 99.3% identity in 137 aa overlap; nitrate reductase electron transfer subunit 2075612 990106 CPE1796 Clostridium perfringens str. 13 nitrate reductase electron transfer subunit NP_562712.1 2075199 R 195102 CDS NP_562713.1 18310779 990107 complement(2075625..2077703) 1 NC_003366.1 similar to gp:AB017192_5 nitrate reductase catalytic subunit from Clostridium perfringen (692 aa); 96.4% identity in 692 aa overlap; nitrate reductase, catalytic subunit 2077703 990107 CPE1797 Clostridium perfringens str. 13 nitrate reductase, catalytic subunit NP_562713.1 2075625 R 195102 CDS NP_562714.1 18310780 990108 complement(2077990..2078418) 1 NC_003366.1 similar to gp:AB017192_4 Clostridium perfringens nitrate reductase gene cluster, partial and complete cds from Clostridium perfringens (142 aa); 95.1% identity in 142 aa overlap. 3 transmembrane regions were found by PSORT.; hypothetical protein 2078418 990108 CPE1798 Clostridium perfringens str. 13 hypothetical protein NP_562714.1 2077990 R 195102 CDS NP_562715.1 18310781 990109 complement(2078639..2079916) 1 NC_003366.1 similar to gp:AB017192_3 Clostridium perfringens nitrate reductase gene cluster, partial and complete cds from Clostridium perfringens (425 aa); 99.8% identity in 425 aa overlap. N-terminal signal sequence was found by PSORT; FAD dependent oxidoreductase 2079916 990109 CPE1799 Clostridium perfringens str. 13 FAD dependent oxidoreductase NP_562715.1 2078639 R 195102 CDS NP_562716.1 18310782 990110 complement(2079948..2080928) 1 NC_003366.1 similar to gp:AB017192_2 electron transfer subunit protein from Clostridium perfringens (326 aa); 99.4% identity in 326 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 2080928 990110 CPE1800 Clostridium perfringens str. 13 hypothetical protein NP_562716.1 2079948 R 195102 CDS NP_562717.1 18310783 990111 complement(2081174..2082049) 1 NC_003366.1 similar to gp:AB017192_1 D-alanyl-D-alanine carboxypeptidase from Clostridium perfringens (183 aa); 100% identity in 183 aa overlap. N-terminal signal sequence was found by PSORT; D-alanyl-D-alanine carboxypeptidase 2082049 dacB 990111 dacB Clostridium perfringens str. 13 D-alanyl-D-alanine carboxypeptidase NP_562717.1 2081174 R 195102 CDS NP_562718.1 18310784 990112 2082197..2082769 1 NC_003366.1 no significant homology N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 2082769 990112 CPE1802 Clostridium perfringens str. 13 hypothetical protein NP_562718.1 2082197 D 195102 CDS NP_562719.1 18310785 990113 2082816..2083235 1 NC_003366.1 similar to gpu:AP001518_26 BH3195 gene product from Bacillus halodurans (147 aa); 44.3% identity in 115 aa overlap; hypothetical protein 2083235 990113 CPE1803 Clostridium perfringens str. 13 hypothetical protein NP_562719.1 2082816 D 195102 CDS NP_562720.1 18310786 990114 complement(2083564..2084151) 1 NC_003366.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer; segregation and condensation protein B 2084151 scpB 990114 scpB Clostridium perfringens str. 13 segregation and condensation protein B NP_562720.1 2083564 R 195102 CDS NP_562721.1 18310787 990115 complement(2084144..2084890) 1 NC_003366.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB; segregation and condensation protein A 2084890 scpA 990115 scpA Clostridium perfringens str. 13 segregation and condensation protein A NP_562721.1 2084144 R 195102 CDS NP_562722.1 18310788 990116 complement(2085161..2086369) 1 NC_003366.1 similar to sp:DACF_BACSU PENICILLIN-BINDING PROTEIN DACF PRECURSOR (D-ALANYL-D-ALANINE CARBOXYPEPTIDASE) (EC 3.4.16.4) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE) from Bacillus subtilis (389 aa); 45.6% identity in 342 aa overlap. N-terminal signal sequence was found by PSORT; serine-type D-Ala-D-Ala carboxypeptidase 2086369 dacF 990116 dacF Clostridium perfringens str. 13 serine-type D-Ala-D-Ala carboxypeptidase NP_562722.1 2085161 R 195102 CDS NP_562723.1 18310789 990117 complement(2086621..2087922) 1 NC_003366.1 similar to sp:PDP_BACSU PYRIMIDINE-NUCLEOSIDE PHOSPHORYLASE (EC 2.4.2.2) (PYNP) from Bacillus subtili (434 aa); 62.7% identity in 432 aa overlap. 2 transmembrane regions were found by PSORT.; pyrimidine-nucleoside phosphorylase 2087922 deoA 990117 deoA Clostridium perfringens str. 13 pyrimidine-nucleoside phosphorylase NP_562723.1 2086621 R 195102 CDS NP_562724.1 18310790 990118 complement(2088169..2089041) 1 NC_003366.1 similar to gpu:AP001512_116 integrase/recombinase from Bacillus halodurans (299 aa); 36.4% identity in 275 aa overlap; tyrosine recombinase XerD 2089041 990118 CPE1808 Clostridium perfringens str. 13 tyrosine recombinase XerD NP_562724.1 2088169 R 195102 CDS NP_562725.1 18310791 990119 complement(2089091..2089711) 1 NC_003366.1 similar to gpu:AP001512_113 stage II sporulation protein M from Bacillus halodurans (217 aa); 23.8% identity in 172 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; stage II sporulation protein M 2089711 spoIIM 990119 spoIIM Clostridium perfringens str. 13 stage II sporulation protein M NP_562725.1 2089091 R 195102 CDS NP_562726.1 18310792 990120 complement(2089979..2090509) 1 NC_003366.1 similar to pir:H72286 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (179 aa); 38.4% identity in 172 aa overlap; hypothetical protein 2090509 990120 CPE1810 Clostridium perfringens str. 13 hypothetical protein NP_562726.1 2089979 R 195102 CDS NP_562727.1 18310793 990121 complement(2090571..2090876) 1 NC_003366.1 no significant homology; hypothetical protein 2090876 990121 CPE1811 Clostridium perfringens str. 13 hypothetical protein NP_562727.1 2090571 R 195102 CDS NP_562728.1 18310794 990122 complement(2090953..2091306) 1 NC_003366.1 similar to gp:CBE288947_2 Spo0A protein from Clostridium beijerinckii (273 aa); 89.7% identity in 117 aa overlap.Truncated by frame shift mutation. Truncated by frameshift mutation (confirmed by PCR-direct sequencing); phosphorylation-activated transcription factor 2091306 spo0A 990122 spo0A Clostridium perfringens str. 13 phosphorylation-activated transcription factor NP_562728.1 2090953 R 195102 CDS NP_562729.1 18310795 3245314 complement(2091331..2091783) 1 NC_003366.1 similar to pir:S60877 phosphorylation-activated transcription factor Spo0A from Clostridium acetobutylicum (strain NCIMB 8052) (224 aa); 76.6% identity in 137 aa overlap.Truncated by frameshift mutation (confirmed by PCR-direct sequencing). 1 transmembrane region was found by PSORT; phosphorylation-activated transcription factor 2091783 3245314 CPE1813 Clostridium perfringens str. 13 phosphorylation-activated transcription factor NP_562729.1 2091331 R 195102 CDS NP_562730.1 18310796 990123 complement(2091957..2093117) 1 NC_003366.1 similar to gp:BSU68235_2 SpoIVB from Bacillus subtilis (426 aa); 47.3% identity in 313 aa overlap. N-terminal signal sequence was found by PSORT; stage IV sporulation protein B 2093117 990123 CPE1814 Clostridium perfringens str. 13 stage IV sporulation protein B NP_562730.1 2091957 R 195102 CDS NP_562731.1 18310797 990124 complement(2093294..2094991) 1 NC_003366.1 similar to sp:RECN_BACSU DNA REPAIR PROTEIN RECN (RECOMBINATION PROTEIN N) from Bacillus subtilis (576 aa); 36.5% identity in 559 aa overlap; DNA repair protein RecN 2094991 recN 990124 recN Clostridium perfringens str. 13 DNA repair protein RecN NP_562731.1 2093294 R 195102 CDS NP_562732.1 18310798 990125 complement(2095007..2095459) 1 NC_003366.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR 2095459 argR 990125 argR Clostridium perfringens str. 13 arginine repressor ArgR NP_562732.1 2095007 R 195102 CDS NP_562733.1 18310799 990126 complement(2095482..2096312) 1 NC_003366.1 similar to sp:Y909_AQUAE HYPOTHETICAL PROTEIN AQ_909 from Aquifex aeolicus (274 aa); 36.9% identity in 249 aa overlap. 1 transmembrane region was found by PSORT; NAD(+)/NADH kinase 2096312 990126 CPE1817 Clostridium perfringens str. 13 NAD(+)/NADH kinase NP_562733.1 2095482 R 195102 CDS NP_562734.1 18310800 990127 complement(2096397..2097212) 1 NC_003366.1 similar to gpu:AP001516_207 hemolysin-like protein from Bacillus halodurans (272 aa); 56.1% identity in 262 aa overlap. 1 transmembrane region was found by PSORT; hemolysin A 2097212 hlyD 990127 hlyD Clostridium perfringens str. 13 hemolysin A NP_562734.1 2096397 R 195102 CDS NP_562735.1 18310801 990128 complement(2097224..2099083) 1 NC_003366.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 2099083 990128 CPE1819 Clostridium perfringens str. 13 1-deoxy-D-xylulose-5-phosphate synthase NP_562735.1 2097224 R 195102 CDS NP_562736.1 18310802 990129 complement(2099104..2100009) 1 NC_003366.1 similar to gpu:AP001516_210 geranyltranstransferase (EC 2.5.1.10) from Bacillus halodurans (294 aa); 43% identity in 286 aa overlap; geranyltranstransferase 2100009 990129 CPE1820 Clostridium perfringens str. 13 geranyltranstransferase NP_562736.1 2099104 R 195102 CDS NP_562737.1 18310803 990130 complement(2099966..2100193) 1 NC_003366.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 2100193 xseB 990130 xseB Clostridium perfringens str. 13 exodeoxyribonuclease VII small subunit NP_562737.1 2099966 R 195102 CDS NP_562738.1 18310804 990131 complement(2100212..2101414) 1 NC_003366.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2101414 xseA 990131 xseA Clostridium perfringens str. 13 exodeoxyribonuclease VII large subunit NP_562738.1 2100212 R 195102 CDS NP_562739.1 18310805 990132 complement(2101416..2102249) 1 NC_003366.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2102249 folD 990132 folD Clostridium perfringens str. 13 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase NP_562739.1 2101416 R 195102 CDS NP_562740.1 18310806 990133 complement(2102298..2102705) 1 NC_003366.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 2102705 nusB 990133 nusB Clostridium perfringens str. 13 transcription antitermination protein NusB NP_562740.1 2102298 R 195102 CDS NP_562741.1 18310807 990134 complement(2102824..2103213) 1 NC_003366.1 similar to sp:YQHY_BACSU HYPOTHETICAL 14.7 KDA PROTEIN IN ACCC-FOLD INTERGENIC REGION from Bacillus subtilis (135 aa); 40.7% identity in 113 aa overlap. Also similar to pir:JC2527 alkaline shock protein from Staphylococcus aureus. 2 transmembrane regions were found by PSORT.; alkaline shock protein 2103213 990134 CPE1825 Clostridium perfringens str. 13 alkaline shock protein NP_562741.1 2102824 R 195102 CDS NP_562742.1 18310808 990135 complement(2103298..2103795) 1 NC_003366.1 similar to sp:S3AH_BACSU STAGE III SPORULATION PROTEIN AH from Bacillus subtilis (218 aa); 22.4% identity in 143 aa overlap. N-terminal signal sequence was found by PSORT; stage III sporulation protein AH 2103795 spoIIIAH 990135 spoIIIAH Clostridium perfringens str. 13 stage III sporulation protein AH NP_562742.1 2103298 R 195102 CDS NP_562743.1 18310809 990136 complement(2103821..2104405) 1 NC_003366.1 similar to pir:B69712 mutants block sporulation after engulfment spoIIIAG from Bacillus subtilis (229 aa); 28% identity in 157 aa overlap. N-terminal signal sequence was found by PSORT; stage III sporulation protein AG 2104405 spoIIIAG 990136 spoIIIAG Clostridium perfringens str. 13 stage III sporulation protein AG NP_562743.1 2103821 R 195102 CDS NP_562744.1 18310810 990137 complement(2104441..2104833) 1 NC_003366.1 no significant homology; stage III sporulation protein AF 2104833 990137 CPE1828 Clostridium perfringens str. 13 stage III sporulation protein AF NP_562744.1 2104441 R 195102 CDS NP_562745.1 18310811 990138 complement(2105007..2106179) 1 NC_003366.1 similar to gpu:AP001516_222 mutants block sporulation after engulfment from Bacillus halodurans (397 aa); 26.4% identity in 333 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; stage III sporulation protein AE 2106179 spoIIIAE 990138 spoIIIAE Clostridium perfringens str. 13 stage III sporulation protein AE NP_562745.1 2105007 R 195102 CDS NP_562746.1 18310812 990139 complement(2106190..2106576) 1 NC_003366.1 similar to sp:S3AD_BACSU STAGE III SPORULATION PROTEIN AD from Bacillus subtilis (133 aa); 34% identity in 103 aa overlap. S.D. unclear. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; stage III sporulation protein AD 2106576 spoIIIAD 990139 spoIIIAD Clostridium perfringens str. 13 stage III sporulation protein AD NP_562746.1 2106190 R 195102 CDS NP_562747.1 18310813 990140 complement(2106664..2106861) 1 NC_003366.1 similar to sp:S3AC_BACSU STAGE III SPORULATION PROTEIN AC from Bacillus subtilis (68 aa); 49.2% identity in 63 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; stage III sporulation protein AC 2106861 spoIIIAC 990140 spoIIIAC Clostridium perfringens str. 13 stage III sporulation protein AC NP_562747.1 2106664 R 195102 CDS NP_562748.1 18310814 990141 complement(2106937..2107452) 1 NC_003366.1 necessary for complete engulfment of forespore; stage III sporulation protein SpoAB 2107452 spoIIIAB 990141 spoIIIAB Clostridium perfringens str. 13 stage III sporulation protein SpoAB NP_562748.1 2106937 R 195102 CDS NP_562749.1 18310815 990142 complement(2107599..2108483) 1 NC_003366.1 similar to sp:S3AA_BACSU STAGE III SPORULATION PROTEIN AA from Bacillus subtilis (307 aa); 40.3% identity in 293 aa overlap; stage III sporulation protein AA 2108483 spoIIIAA 990142 spoIIIAA Clostridium perfringens str. 13 stage III sporulation protein AA NP_562749.1 2107599 R 195102 CDS NP_562750.1 18310816 990143 complement(2108682..2109044) 1 NC_003366.1 no significant homology; hypothetical protein 2109044 990143 CPE1834 Clostridium perfringens str. 13 hypothetical protein NP_562750.1 2108682 R 195102 CDS NP_562751.1 18310817 990144 complement(2109158..2109715) 1 NC_003366.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2109715 efp 990144 efp Clostridium perfringens str. 13 elongation factor P NP_562751.1 2109158 R 195102 CDS NP_562752.1 18310818 990145 complement(2109886..2110233) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2110233 990145 CPE1836 Clostridium perfringens str. 13 hypothetical protein NP_562752.1 2109886 R 195102 CDS NP_562753.1 18310819 990146 complement(2110230..2110670) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2110670 990146 CPE1837 Clostridium perfringens str. 13 hypothetical protein NP_562753.1 2110230 R 195102 CDS NP_562754.1 18310820 990147 complement(2110630..2111280) 1 NC_003366.1 no significant homology; hypothetical protein 2111280 990147 CPE1838 Clostridium perfringens str. 13 hypothetical protein NP_562754.1 2110630 R 195102 CDS NP_562755.1 18310821 990148 complement(2111216..2111626) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2111626 990148 CPE1839 Clostridium perfringens str. 13 hypothetical protein NP_562755.1 2111216 R 195102 CDS NP_562756.1 18310822 990149 complement(2111613..2111903) 1 NC_003366.1 no significant homology; hypothetical protein 2111903 990149 CPE1840 Clostridium perfringens str. 13 hypothetical protein NP_562756.1 2111613 R 195102 CDS NP_562757.1 18310823 990150 complement(2112038..2112550) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2112550 990150 CPE1841 Clostridium perfringens str. 13 hypothetical protein NP_562757.1 2112038 R 195102 CDS NP_562758.1 18310824 990151 complement(2112570..2112998) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2112998 990151 CPE1842 Clostridium perfringens str. 13 hypothetical protein NP_562758.1 2112570 R 195102 CDS NP_562759.1 18310825 990152 complement(2112991..2114010) 1 NC_003366.1 similar to pir:D70365 fimbrial assembly protein PilC from Aquifex aeolicus (408 aa); 22.5% identity in 325 aa overlap. 4 transmembrane regions were found by PSORT.; fimbrial assembly protein 2114010 pilC 990152 pilC Clostridium perfringens str. 13 fimbrial assembly protein NP_562759.1 2112991 R 195102 CDS NP_562760.1 18310826 990153 complement(2113997..2115385) 1 NC_003366.1 similar to pir:B70469 type IV pilus assembly protein TapB from Aquifex aeolicus (566 aa); 42.6% identity in 352 aa overlap; type IV pilus assembly protein 2115385 tapB 990153 tapB Clostridium perfringens str. 13 type IV pilus assembly protein NP_562760.1 2113997 R 195102 CDS NP_562761.1 18310827 990154 complement(2115485..2116516) 1 NC_003366.1 no significant homology; hypothetical protein 2116516 990154 CPE1845 Clostridium perfringens str. 13 hypothetical protein NP_562761.1 2115485 R 195102 CDS NP_562762.1 18310828 990155 complement(2116533..2117351) 1 NC_003366.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 2117351 dapF 990155 dapF Clostridium perfringens str. 13 diaminopimelate epimerase NP_562762.1 2116533 R 195102 CDS NP_562763.1 18310829 990156 2117443..2119170 1 NC_003366.1 similar to pir:G69877 fibronectin-binding protein homolog yloA from Bacillus subtilis (572 aa); 39.3% identity in 573 aa overlap; fibronectin-binding protein 2119170 990156 CPE1847 Clostridium perfringens str. 13 fibronectin-binding protein NP_562763.1 2117443 D 195102 CDS NP_562764.1 18310830 990157 complement(2119280..2120407) 1 NC_003366.1 similar to gpu:AP001513_44 BH1771 gene product from Bacillus halodurans (385 aa); 57.1% identity in 364 aa overlap; hypothetical protein 2120407 990157 CPE1848 Clostridium perfringens str. 13 hypothetical protein NP_562764.1 2119280 R 195102 CDS NP_562765.1 18310831 990158 complement(2120427..2120963) 1 NC_003366.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 2120963 990158 CPE1849 Clostridium perfringens str. 13 bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase NP_562765.1 2120427 R 195102 CDS NP_562766.1 18310832 990159 complement(2120967..2121887) 1 NC_003366.1 similar to sp:YLYB_BACSU HYPOTHETICAL 33.7 KDA PROTEIN IN LSP-PYRR INTERGENIC REGION (ORF-X) from Bacillus subtilis (303 aa); 56.8% identity in 296 aa overlap; hypothetical protein 2121887 990159 CPE1850 Clostridium perfringens str. 13 hypothetical protein NP_562766.1 2120967 R 195102 CDS NP_562767.1 18310833 990160 complement(2122025..2122651) 1 NC_003366.1 similar to gpu:AP001515_280 cell-division initiation protein (septum placement) from Bacillus halodurans (165 aa); 32.2% identity in 149 aa overlap; cell-division initiation protein 2122651 divIVA 990160 divIVA Clostridium perfringens str. 13 cell-division initiation protein NP_562767.1 2122025 R 195102 CDS NP_562768.1 18310834 990161 complement(2122664..2123425) 1 NC_003366.1 similar to pir:H69876 cell-division protein homolog ylmH from Bacillus subtilis (257 aa); 29.4% identity in 194 aa overlap; S4 domain-containing protein 2123425 990161 CPE1852 Clostridium perfringens str. 13 S4 domain-containing protein NP_562768.1 2122664 R 195102 CDS NP_562769.1 18310835 990162 complement(2123427..2123882) 1 NC_003366.1 partially similar to gpu:AP001515_283 BH2549 gene product from Bacillus halodurans (149 aa); 39.2% identity in 79 aa overlap; hypothetical protein 2123882 990162 CPE1853 Clostridium perfringens str. 13 hypothetical protein NP_562769.1 2123427 R 195102 CDS NP_562770.1 18310836 990163 complement(2123895..2124554) 1 NC_003366.1 similar to pir:B72217 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (229 aa); 41.7% identity in 211 aa overlap; hypothetical protein 2124554 990163 CPE1854 Clostridium perfringens str. 13 hypothetical protein NP_562770.1 2123895 R 195102 CDS NP_562771.1 18310837 990164 complement(2124654..2125385) 1 NC_003366.1 similar to gp:BLU01958_3 Bacillus licheniformis 5A2 divIB gene, complete cds from Bacillus licheniformis (188 aa); 28.6% identity in 189 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2125385 990164 CPE1855 Clostridium perfringens str. 13 hypothetical protein NP_562771.1 2124654 R 195102 CDS NP_562772.1 18310838 990165 complement(2125398..2125736) 1 NC_003366.1 similar to gpu:AP001515_294 small basic protein from Bacillus halodurans (117 aa); 46.7% identity in 92 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; small basic protein 2125736 sbp 990165 sbp Clostridium perfringens str. 13 small basic protein NP_562772.1 2125398 R 195102 CDS NP_562773.1 18310839 990166 complement(2125749..2126465) 1 NC_003366.1 similar to gpu:AP001515_296 BH2562 gene product from Bacillus halodurans (240 aa); 25.5% identity in 165 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 2126465 990166 CPE1857 Clostridium perfringens str. 13 hypothetical protein NP_562773.1 2125749 R 195102 CDS NP_562774.1 18310840 990167 complement(2126479..2127225) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; cell division protein FtsQ 2127225 990167 CPE1858 Clostridium perfringens str. 13 cell division protein FtsQ NP_562774.1 2126479 R 195102 CDS NP_562775.1 18310841 990168 complement(2127383..2128507) 1 NC_003366.1 similar to sp:SP5E_BACSU STAGE V SPORULATION PROTEIN E. from Bacillus subtilis (366 aa); 43.2% identity in 352 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; stage V sporulation protein E 2128507 spoVE 990168 spoVE Clostridium perfringens str. 13 stage V sporulation protein E NP_562775.1 2127383 R 195102 CDS NP_562776.1 18310842 990169 complement(2128535..2129488) 1 NC_003366.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 2129488 mraY 990169 mraY Clostridium perfringens str. 13 phospho-N-acetylmuramoyl-pentapeptide- transferase NP_562776.1 2128535 R 195102 CDS NP_562777.1 18310843 990170 complement(2129556..2130917) 1 NC_003366.1 similar to sp:MURF_BACSU UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2, 6-DIAMINOPIMELATE-D-ALANYL-D- ALANYL LIGASE (EC 6.3.2.15) (UDP-MURNAC-PENTAPEPTIDE SYNTHETASE) (D-ALANYL-D-ALANINE-ADDING ENZYME) from Bacillus subtilis (457 aa); 38.7% identity in 452 aa overlap; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 2130917 murF 990170 murF Clostridium perfringens str. 13 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase NP_562777.1 2129556 R 195102 CDS NP_562778.1 18310844 990171 complement(2130930..2132384) 1 NC_003366.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 2132384 murE 990171 murE Clostridium perfringens str. 13 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase NP_562778.1 2130930 R 195102 CDS NP_562779.1 18310845 990172 complement(2132479..2134698) 1 NC_003366.1 similar to gpu:AP001516_1 stage V sporulation protein (soprulation specific penicillin-binding protein) (spore cortex) from Bacillus halodurans (644 aa); 33.3% identity in 651 aa overlap. 1 transmembrane region was found by PSORT; stage V sporulation protein D 2134698 spoVD 990172 spoVD Clostridium perfringens str. 13 stage V sporulation protein D NP_562779.1 2132479 R 195102 CDS NP_562780.1 18310846 990173 complement(2134886..2135314) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2135314 990173 CPE1864 Clostridium perfringens str. 13 hypothetical protein NP_562780.1 2134886 R 195102 CDS NP_562781.1 18310847 990174 complement(2135386..2136318) 1 NC_003366.1 similar to sp:YLXA_BACSU HYPOTHETICAL 35.3 KDA PROTEIN IN FTSL 5'REGION (ORFB) from Bacillus subtilis (311 aa); 54.1% identity in 307 aa overlap; S-adenosyl-methyltransferase MraW 2136318 mraW 990174 mraW Clostridium perfringens str. 13 S-adenosyl-methyltransferase MraW NP_562781.1 2135386 R 195102 CDS NP_562782.1 18310848 990176 complement(2136866..2137963) 1 NC_003366.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 2137963 990176 CPE1866 Clostridium perfringens str. 13 GTP-dependent nucleic acid-binding protein EngD NP_562782.1 2136866 R 195102 CDS NP_562783.1 18310849 990177 2138122..2138919 1 NC_003366.1 similar to prf:2516401CT polysaccharide deacetylase-like protein from Bacillus cereus (260 aa); 43.8% identity in 258 aa overlap. N-terminal signal sequence was found by PSORT; nodulation protein nodB; polysaccharide deacetylase 2138919 990177 CPE1867 Clostridium perfringens str. 13 polysaccharide deacetylase NP_562783.1 2138122 D 195102 CDS NP_562784.1 18310850 990178 complement(2139099..2139734) 1 NC_003366.1 similar to sp:SCE4_METEX SERINE CYCLE ENZYME (ORF4) from Methylobacterium extorquens (208 aa); 30% identity in 200 aa overlap. 2 transmembrane regions were found by PSORT.; methenyltetrahydrofolate cyclohydrolase 2139734 990178 CPE1868 Clostridium perfringens str. 13 methenyltetrahydrofolate cyclohydrolase NP_562784.1 2139099 R 195102 CDS NP_562785.1 18310851 990179 complement(2139763..2141049) 1 NC_003366.1 similar to C-terminal region of gp:AF169324_12 BcbC from Pasteurella multocida (1033 aa); 27% identity in 244 aa overlap; hypothetical protein 2141049 990179 CPE1869 Clostridium perfringens str. 13 hypothetical protein NP_562785.1 2139763 R 195102 CDS NP_562786.1 18310852 990180 complement(2141049..2141765) 1 NC_003366.1 similar to gp:TTH401026_3 hypothetical protein from Thermoanaerobacter thermohydrosulfuricus (245 aa); 39.9% identity in 208 aa overlap; teichoic acid biosynthesis protein A 2141765 tagA 990180 tagA Clostridium perfringens str. 13 teichoic acid biosynthesis protein A NP_562786.1 2141049 R 195102 CDS NP_562787.1 18310853 990181 complement(2141781..2142428) 1 NC_003366.1 similar to sp:Y263_METJA HYPOTHETICAL PROTEIN MJ0263 from Methanococcus jannaschii (320 aa); 23.4% identity in 201 aa overlap. ATA start; TPR domain-containing protein 2142428 990181 CPE1871 Clostridium perfringens str. 13 TPR domain-containing protein NP_562787.1 2141781 R 195102 CDS NP_562788.1 18310854 990182 complement(2142447..2142881) 1 NC_003366.1 no significant homology; hypothetical protein 2142881 990182 CPE1872 Clostridium perfringens str. 13 hypothetical protein NP_562788.1 2142447 R 195102 CDS NP_562789.1 18310855 990183 complement(2143173..2144900) 1 NC_003366.1 similar to gpu:AP001510_281 phosphomannomutase from Bacillus halodurans (578 aa); 51.1% identity in 573 aa overlap; phosphomannomutase 2144900 manB 990183 manB Clostridium perfringens str. 13 phosphomannomutase NP_562789.1 2143173 R 195102 CDS NP_562790.1 18310856 990184 complement(2145056..2145667) 1 NC_003366.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2145667 ctc 990184 ctc Clostridium perfringens str. 13 50S ribosomal protein L25 NP_562790.1 2145056 R 195102 CDS NP_562791.1 18310857 990185 complement(2145801..2150240) 1 NC_003366.1 partially similar to gpu:AP001510_17 BH0842 gene product from Bacillus halodurans (795 aa); 40.8% identity in 762 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2150240 990185 CPE1875 Clostridium perfringens str. 13 hypothetical protein NP_562791.1 2145801 R 195102 CDS NP_562792.1 18310858 990186 complement(2150418..2152670) 1 NC_003366.1 partially similar to gpu:AE003864_7 hypothetical protein from Xylella fastidiosa (460 aa); 33.6% identity in 438 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2152670 990186 CPE1876 Clostridium perfringens str. 13 hypothetical protein NP_562792.1 2150418 R 195102 CDS NP_562793.1 18310859 990187 complement(2152894..2153610) 1 NC_003366.1 similar to pir:F69961 glycerophosphodiester phosphodiesterase homolog yqiK from Bacillus subtilis (239 aa); 39.2% identity in 227 aa overlap; glycerophosphodiester phosphodiesterase 2153610 glpQ 990187 glpQ Clostridium perfringens str. 13 glycerophosphodiester phosphodiesterase NP_562793.1 2152894 R 195102 CDS NP_562794.1 18310860 990188 complement(2153614..2154636) 1 NC_003366.1 similar to gpu:AP000600_10 glycolate oxidase from Arabidopsis thaliana (365 aa); 35.9% identity in 295 aa overlap. 2 transmembrane regions were found by PSORT.; glycolate oxidase 2154636 990188 CPE1878 Clostridium perfringens str. 13 glycolate oxidase NP_562794.1 2153614 R 195102 CDS NP_562795.1 18310861 990189 complement(2154650..2155093) 1 NC_003366.1 similar to pir:F69744 hypothetical protein ybbK from Bacillus subtilis (151 aa); 47.9% identity in 146 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2155093 990189 CPE1879 Clostridium perfringens str. 13 hypothetical protein NP_562795.1 2154650 R 195102 CDS NP_562796.1 18310862 990190 complement(2155331..2157514) 1 NC_003366.1 similar to gpu:AP001516_1 stage V sporulation protein (soprulation specific penicillin-binding protein) (spore cortex) from Bacillus halodurans (644 aa); 37.5% identity in 627 aa overlap. N-terminal signal sequence was found by PSORT; soprulation specific penicillin-binding protein; stage V sporulation protein D 2157514 spoVD 990190 spoVD Clostridium perfringens str. 13 stage V sporulation protein D NP_562796.1 2155331 R 195102 CDS NP_562797.1 18310863 990191 complement(2157777..2160137) 1 NC_003366.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 2160137 mutS2 990191 mutS2 Clostridium perfringens str. 13 recombination and DNA strand exchange inhibitor protein NP_562797.1 2157777 R 195102 CDS NP_562798.1 18310864 990192 complement(2160151..2162511) 1 NC_003366.1 similar to pir:D69102 collagenase from Methanobacterium thermoautotrophicum (strain Delta H) (807 aa); 37.5% identity in 512 aa overlap; proteinase; peptidase U32 2162511 990192 CPE1882 Clostridium perfringens str. 13 peptidase U32 NP_562798.1 2160151 R 195102 CDS NP_562799.1 18310865 990193 2162901..2163689 1 NC_003366.1 similar to sp:YHIC_LACLA HYPOTHETICAL 31.3 KDA PROTEIN IN HISIE 3'REGION (ORF13) from Lactococcus lactis subsp. lactis (269 aa); 33% identity in 221 aa overlap; histidinol-phosphatase 2163689 990193 CPE1883 Clostridium perfringens str. 13 histidinol-phosphatase NP_562799.1 2162901 D 195102 CDS NP_562800.1 18310866 990194 complement(2163776..2165131) 1 NC_003366.1 no significant homology; hypothetical protein 2165131 990194 CPE1884 Clostridium perfringens str. 13 hypothetical protein NP_562800.1 2163776 R 195102 CDS NP_562801.1 18310867 990195 complement(2165212..2167593) 1 NC_003366.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2167593 pheT 990195 pheT Clostridium perfringens str. 13 phenylalanyl-tRNA synthetase subunit beta NP_562801.1 2165212 R 195102 CDS NP_562802.1 18310868 990196 complement(2167617..2168642) 1 NC_003366.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2168642 pheS 990196 pheS Clostridium perfringens str. 13 phenylalanyl-tRNA synthetase subunit alpha NP_562802.1 2167617 R 195102 CDS NP_562803.1 18310869 990197 complement(2169225..2170379) 1 NC_003366.1 similar to pir:F75550 probable transposase from Deinococcus radiodurans (strain R1) (409 aa); 43% identity in 381 aa overlap; transposase 2170379 990197 CPE1887 Clostridium perfringens str. 13 transposase NP_562803.1 2169225 R 195102 CDS NP_562804.1 18310870 990198 complement(2170390..2170761) 1 NC_003366.1 similar to pir:F75335 probable transposase from Deinococcus radiodurans (strain R1) (140 aa); 52.8% identity in 123 aa overlap; transposase 2170761 990198 CPE1888 Clostridium perfringens str. 13 transposase NP_562804.1 2170390 R 195102 CDS NP_562805.1 18310871 990199 complement(2171082..2171855) 1 NC_003366.1 similar to gpu:AP001517_234 rRNA methylase from Bacillus halodurans (251 aa); 39% identity in 223 aa overlap; TrmH family RNA methyltransferase 2171855 990199 CPE1889 Clostridium perfringens str. 13 TrmH family RNA methyltransferase NP_562805.1 2171082 R 195102 CDS NP_562806.1 18310872 990200 complement(2171881..2172546) 1 NC_003366.1 similar to prf:2408326B trkA gene from Thermoanaerobacter ethanolicus (195 aa); 59.3% identity in 189 aa overlap. 1 transmembrane region was found by PSORT; potassium uptake system protein 2172546 trkA 990200 trkA Clostridium perfringens str. 13 potassium uptake system protein NP_562806.1 2171881 R 195102 CDS NP_562807.1 18310873 990201 complement(2172569..2173909) 1 NC_003366.1 similar to pir:G53610 ntpJ protein from Enterococcus hirae (448 aa); 45.3% identity in 437 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; TrkH family potassium uptake protein 2173909 trkB 990201 trkB Clostridium perfringens str. 13 TrkH family potassium uptake protein NP_562807.1 2172569 R 195102 CDS NP_562808.1 18310874 990202 complement(2174138..2174497) 1 NC_003366.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2174497 rplT 990202 rplT Clostridium perfringens str. 13 50S ribosomal protein L20 NP_562808.1 2174138 R 195102 CDS NP_562809.1 18310875 990203 complement(2174527..2174724) 1 NC_003366.1 similar to gpu:AP001517_261 ribosomal protein L35 from Bacillus halodurans (66 aa); 62.5% identity in 64 aa overlap; 50S ribosomal protein L35 2174724 rpmI 990203 rpmI Clostridium perfringens str. 13 50S ribosomal protein L35 NP_562809.1 2174527 R 195102 CDS NP_562810.1 18310876 990204 complement(2174746..2175150) 1 NC_003366.1 similar to pir:FIBS3F translation initiation factor IF-3 from Bacillus stearothermophilus (172 aa); 46.4% identity in 168 aa overlap; translation initiation factor IF-3 2175150 infC 990204 infC Clostridium perfringens str. 13 translation initiation factor IF-3 NP_562810.1 2174746 R 195102 CDS NP_562811.1 18310877 990205 complement(2175549..2176427) 1 NC_003366.1 similar to sp:YTXC_BACSU HYPOTHETICAL 33.3 KDA PROTEIN IN DNAI-THRS INTERGENIC REGION (ORF-281) from Bacillus subtilis (281 aa); 24.8% identity in 202 aa overlap; sporulation protein YtxC 2176427 990205 CPE1895 Clostridium perfringens str. 13 sporulation protein YtxC NP_562811.1 2175549 R 195102 CDS NP_562812.1 18310878 990206 2176562..2177257 1 NC_003366.1 similar to prf:2509371E grrZ gene from Eubacterium acidaminophilum (220 aa); 42.1% identity in 183 aa overlap; hypothetical protein 2177257 990206 CPE1896 Clostridium perfringens str. 13 hypothetical protein NP_562812.1 2176562 D 195102 CDS NP_562813.1 18310879 990207 2177512..2178492 1 NC_003366.1 similar to pir:T35886 hypothetical protein SC9B10.17 from Streptomyces coelicolor (330 aa); 33.8% identity in 302 aa overlap. 1 transmembrane region was found by PSORT; BadF/BadG/BcrA/BcrD ATPase 2178492 990207 CPE1897 Clostridium perfringens str. 13 BadF/BadG/BcrA/BcrD ATPase NP_562813.1 2177512 D 195102 CDS NP_562814.1 18310880 990208 complement(2178625..2179179) 1 NC_003366.1 similar to sp:YSA1_YEAST YSA1 PROTEIN from Saccharomyces cerevisiae (231 aa); 34.3% identity in 134 aa overlap; hypothetical protein 2179179 990208 CPE1898 Clostridium perfringens str. 13 hypothetical protein NP_562814.1 2178625 R 195102 CDS NP_562815.1 18310881 990209 complement(2179345..2179899) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2179899 990209 CPE1899 Clostridium perfringens str. 13 hypothetical protein NP_562815.1 2179345 R 195102 CDS NP_562816.1 18310882 990210 2180198..2180575 1 NC_003366.1 no significant homology; hypothetical protein 2180575 990210 CPE1900 Clostridium perfringens str. 13 hypothetical protein NP_562816.1 2180198 D 195102 CDS NP_562817.1 18310883 990215 complement(2181056..2182015) 1 NC_003366.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; heat shock protein 33 2182015 hslO 990215 hslO Clostridium perfringens str. 13 heat shock protein 33 NP_562817.1 2181056 R 195102 CDS NP_562818.1 18310884 990216 complement(2182031..2182768) 1 NC_003366.1 similar to sp:YQEM_BACSU HYPOTHETICAL 28.3 KDA PROTEIN IN AROD-COMER INTERGENIC REGION from Bacillus subtilis (247 aa); 31% identity in 242 aa overlap; hypothetical protein 2182768 990216 CPE1902 Clostridium perfringens str. 13 hypothetical protein NP_562818.1 2182031 R 195102 CDS NP_562819.1 18310885 990217 complement(2182820..2183092) 1 NC_003366.1 similar to sp:SAS2_CLOBI SMALL, ACID-SOLUBLE SPORE PROTEIN BETA (SASP) (ASSP) from Clostridium bifermentans (64 aa); 46.4% identity in 56 aa overlap; beta type small acid-soluble spore protein 2183092 990217 CPE1903 Clostridium perfringens str. 13 beta type small acid-soluble spore protein NP_562819.1 2182820 R 195102 CDS NP_562820.1 18310886 990218 2183294..2184271 1 NC_003366.1 similar to sp:DHAS_AQUAE ASPARTATE-SEMIALDEHYDE DEHYDROGENASE (EC 1.2.1.11) (ASA DEHYDROGENASE) from Aquifex aeolicus (340 aa); 55.7% identity in 323 aa overlap; aspartate-semialdehyde dehydrogenase 2184271 asd 990218 asd Clostridium perfringens str. 13 aspartate-semialdehyde dehydrogenase NP_562820.1 2183294 D 195102 CDS NP_562821.1 18310887 990219 2184296..2185171 1 NC_003366.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2185171 dapA 990219 dapA Clostridium perfringens str. 13 dihydrodipicolinate synthase NP_562821.1 2184296 D 195102 CDS NP_562822.1 18310888 990220 2185244..2186008 1 NC_003366.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 2186008 dapB 990220 dapB Clostridium perfringens str. 13 dihydrodipicolinate reductase NP_562822.1 2185244 D 195102 CDS NP_562823.1 18310889 990221 complement(2186304..2187446) 1 NC_003366.1 similar to prf:1603288B kinA assocd ORF Y from Bacillus subtilis (393 aa); 44.1% identity in 381 aa overlap.Also similar to many aminotransferases; asparate aminotransferase 2187446 patA 990221 patA Clostridium perfringens str. 13 asparate aminotransferase NP_562823.1 2186304 R 195102 CDS NP_562824.1 18310890 990222 complement(2187446..2187982) 1 NC_003366.1 similar to pir:B72252 cob(I)alamin adenosyltransferase from Thermotoga maritima (strain MSB8) (170 aa); 44.5% identity in 173 aa overlap; cob(I)alamin adenosyltransferase 2187982 990222 CPE1908 Clostridium perfringens str. 13 cob(I)alamin adenosyltransferase NP_562824.1 2187446 R 195102 CDS NP_562825.1 18310891 990223 2188176..2188886 1 NC_003366.1 similar to pir:F69866 tetrahydrodipicolinate succinylase homolog ykuQ from Bacillus subtilis (236 aa); 53.7% identity in 231 aa overlap. 1 transmembrane region was found by PSORT; tetrahydrodipicolinate succinylase 2188886 dapD 990223 dapD Clostridium perfringens str. 13 tetrahydrodipicolinate succinylase NP_562825.1 2188176 D 195102 CDS NP_562826.1 18310892 990224 complement(2188936..2189592) 1 NC_003366.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 2189592 990224 CPE1910 Clostridium perfringens str. 13 single-stranded DNA-binding protein NP_562826.1 2188936 R 195102 CDS NP_562827.1 18310893 990225 complement(2189708..2190484) 1 NC_003366.1 partially similar to pir:H69882 deacetylase homolog ylxY from Bacillus subtilis (319 aa); 28.5% identity in 200 aa overlap. N-terminal signal sequence was found by PSORT; polysaccharide deacetylase 2190484 990225 CPE1911 Clostridium perfringens str. 13 polysaccharide deacetylase NP_562827.1 2189708 R 195102 CDS NP_562828.1 18310894 990226 2190592..2191122 1 NC_003366.1 no significant homology; hypothetical protein 2191122 990226 CPE1912 Clostridium perfringens str. 13 hypothetical protein NP_562828.1 2190592 D 195102 CDS NP_562829.1 18310895 990227 2191188..2192294 1 NC_003366.1 similar to gp:AF051356_3 permease from Streptococcus mutans (364 aa); 27.1% identity in 362 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; hypothetical protein 2192294 990227 CPE1913 Clostridium perfringens str. 13 hypothetical protein NP_562829.1 2191188 D 195102 CDS NP_562830.1 18310896 990228 2192466..2193887 1 NC_003366.1 similar to prf:2423292A psr gene from Enterococcus hirae (293 aa); 30.7% identity in 293 aa overlap. N-terminal signal sequence was found by PSORT; PBP 5 synthesis repressor 2193887 990228 CPE1914 Clostridium perfringens str. 13 PBP 5 synthesis repressor NP_562830.1 2192466 D 195102 CDS NP_562831.1 18310897 990229 complement(2193942..2194583) 1 NC_003366.1 similar to sp:HLY3_BACCE HEMOLYSIN III (HLY-III) from Bacillus cereus (219 aa); 42.9% identity in 203 aa overlap. 6 transmembrane regions were found by PSORT.; hemolysin III 2194583 hlyE 990229 hlyE Clostridium perfringens str. 13 hemolysin III NP_562831.1 2193942 R 195102 CDS NP_562832.1 18310898 990230 2194709..2195203 1 NC_003366.1 similar to pir:S74709 hypothetical protein sll1188 from Synechocystis sp. (strain PCC 6803) (164 aa); 43.9% identity in 164 aa overlap; hypothetical protein 2195203 990230 CPE1916 Clostridium perfringens str. 13 hypothetical protein NP_562832.1 2194709 D 195102 CDS NP_562833.1 18310899 990231 complement(2195318..2196877) 1 NC_003366.1 similar to gpu:AE004383_5 conserved hypothetical protein from Vibrio cholerae (468 aa); 34.3% identity in 353 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; hypothetical protein 2196877 990231 CPE1917 Clostridium perfringens str. 13 hypothetical protein NP_562833.1 2195318 R 195102 CDS NP_562834.1 18310900 990232 complement(2196988..2198310) 1 NC_003366.1 similar to gp:CPFOLC_1 folC gene product from Clostridium perfringens (148 aa); 98.6% identity in 145 aa overlap. 1 transmembrane region was found by PSORT; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2198310 folC 990232 folC Clostridium perfringens str. 13 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase NP_562834.1 2196988 R 195102 CDS NP_562835.1 18310901 990233 complement(2198991..2201633) 1 NC_003366.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 2201633 valS 990233 valS Clostridium perfringens str. 13 valyl-tRNA synthetase NP_562835.1 2198991 R 195102 CDS NP_562836.1 18310902 990234 2202293..2202643 1 NC_003366.1 no significant homology; hypothetical protein 2202643 990234 CPE1920 Clostridium perfringens str. 13 hypothetical protein NP_562836.1 2202293 D 195102 CDS NP_562837.1 18310903 990235 complement(2202701..2202862) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2202862 990235 CPE1921 Clostridium perfringens str. 13 hypothetical protein NP_562837.1 2202701 R 195102 CDS NP_562838.1 18310904 990236 complement(2202849..2204024) 1 NC_003366.1 partially similar to pir:C71139 hypothetical protein PH0326 from Pyrococcus horikoshii (1003 aa); 33.3% identity in 120 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; transglutaminase domain-containing protein 2204024 990236 CPE1922 Clostridium perfringens str. 13 transglutaminase domain-containing protein NP_562838.1 2202849 R 195102 CDS NP_562839.1 18310905 990237 complement(2204030..2204668) 1 NC_003366.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 2204668 recX 990237 recX Clostridium perfringens str. 13 recombination regulator RecX NP_562839.1 2204030 R 195102 CDS NP_562840.1 18310906 990238 complement(2204674..2205918) 1 NC_003366.1 similar to sp:YMXG_BACSU HYPOTHETICAL ZINC PROTEASE YMXG (EC 3.4.99.-) (ORFP) from Bacillus subtilis (409 aa); 29% identity in 365 aa overlap; M16 family peptidase 2205918 990238 CPE1924 Clostridium perfringens str. 13 M16 family peptidase NP_562840.1 2204674 R 195102 CDS NP_562841.1 18310907 990239 2205887..2206684 1 NC_003366.1 similar to gp:CPHYPC_1 hypC gene product from Clostridium perfringens (110 aa); 100% identity in 106 aa overlap.Also similar to many two-component response regulators; DNA-binding response regulator 2206684 990239 CPE1925 Clostridium perfringens str. 13 DNA-binding response regulator NP_562841.1 2205887 D 195102 CDS NP_562842.1 18310908 990240 2206684..2208207 1 NC_003366.1 similar to prf:1502267A phoR gene from Bacillus subtilis (579 aa); 38.1% identity in 223 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; sensor histidine kinase 2208207 990240 CPE1926 Clostridium perfringens str. 13 sensor histidine kinase NP_562842.1 2206684 D 195102 CDS NP_562843.1 18310909 990241 complement(2208522..2209268) 1 NC_003366.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2209268 fabG 990241 fabG Clostridium perfringens str. 13 3-ketoacyl-ACP reductase NP_562843.1 2208522 R 195102 CDS NP_562844.1 18310910 990242 complement(2209361..2210347) 1 NC_003366.1 similar to pir:S20452 hypothetical protein X (fragment) from Klebsiella pneumoniae (271 aa); 34.3% identity in 254 aa overlap; dipeptidase 2210347 990242 CPE1928 Clostridium perfringens str. 13 dipeptidase NP_562844.1 2209361 R 195102 CDS NP_562845.1 18310911 990243 complement(2210573..2211805) 1 NC_003366.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2211805 glyA 990243 glyA Clostridium perfringens str. 13 serine hydroxymethyltransferase NP_562845.1 2210573 R 195102 CDS NP_562846.1 18310912 990244 2211985..2212755 1 NC_003366.1 similar to gpu:AP001507_81 BH0081 gene product from Bacillus halodurans (251 aa); 34.3% identity in 245 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 2212755 990244 CPE1930 Clostridium perfringens str. 13 hypothetical protein NP_562846.1 2211985 D 195102 CDS NP_562847.1 18310913 990245 2212756..2213277 1 NC_003366.1 similar to gpu:AP001507_82 BH0082 gene product from Bacillus halodurans (150 aa); 36.8% identity in 133 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 2213277 990245 CPE1931 Clostridium perfringens str. 13 hypothetical protein NP_562847.1 2212756 D 195102 CDS NP_562848.1 18310914 990246 complement(2213295..2213567) 1 NC_003366.1 similar to pir:G70041 conserved hypothetical protein yvgZ from Bacillus subtilis (101 aa); 40% identity in 90 aa overlap; hypothetical protein 2213567 990246 CPE1932 Clostridium perfringens str. 13 hypothetical protein NP_562848.1 2213295 R 195102 CDS NP_562849.1 18310915 990247 complement(2213854..2215647) 1 NC_003366.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2215647 aspS 990247 aspS Clostridium perfringens str. 13 aspartyl-tRNA synthetase NP_562849.1 2213854 R 195102 CDS NP_562850.1 18310916 990248 complement(2215668..2216915) 1 NC_003366.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2216915 hisS 990248 hisS Clostridium perfringens str. 13 histidyl-tRNA synthetase NP_562850.1 2215668 R 195102 CDS NP_562851.1 18310917 990249 complement(2216947..2218389) 1 NC_003366.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2218389 hemZ 990249 hemZ Clostridium perfringens str. 13 coproporphyrinogen III oxidase NP_562851.1 2216947 R 195102 CDS NP_562852.1 18310918 990250 complement(2218379..2218999) 1 NC_003366.1 similar to sp:YCBL_ECOLI HYPOTHETICAL 23.8 KDA PROTEIN IN MUKB-ASPC INTERGENIC REGION from Escherichia coli (215 aa); 39.8% identity in 206 aa overlap; metallo-beta-lactamase 2218999 990250 CPE1936 Clostridium perfringens str. 13 metallo-beta-lactamase NP_562852.1 2218379 R 195102 CDS NP_562853.1 18310919 990251 complement(2219159..2219608) 1 NC_003366.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 2219608 990251 CPE1937 Clostridium perfringens str. 13 D-tyrosyl-tRNA(Tyr) deacylase NP_562853.1 2219159 R 195102 CDS NP_562854.1 18310920 990252 complement(2219623..2221803) 1 NC_003366.1 (p)ppGpp synthetase; 726 aa, similar to prf:2404419A relA gene from Bacillus subtilis (734 aa); 54% identity in 722 aa overlap. 1 transmembrane region was found by PSORT; GTP pyrophosphokinase 2221803 relA 990252 relA Clostridium perfringens str. 13 GTP pyrophosphokinase NP_562854.1 2219623 R 195102 CDS NP_562855.1 18310921 990253 complement(2221955..2222473) 1 NC_003366.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 2222473 apt 990253 apt Clostridium perfringens str. 13 adenine phosphoribosyltransferase NP_562855.1 2221955 R 195102 CDS NP_562856.1 18310922 990254 complement(2222518..2223372) 1 NC_003366.1 partially similar to pir:H69980 single-strand DNA-specific exonuclease homolog yrvE from Bacillus subtilis (786 aa); 27.9% identity in 262 aa overlap. 2 transmembrane regions were found by PSORT.; DHH domain-containing protein 2223372 990254 CPE1940 Clostridium perfringens str. 13 DHH domain-containing protein NP_562856.1 2222518 R 195102 CDS NP_562857.1 18310923 990255 complement(2223573..2224442) 1 NC_003366.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 2224442 secF 990255 secF Clostridium perfringens str. 13 preprotein translocase subunit SecF NP_562857.1 2223573 R 195102 CDS NP_562858.1 18310924 990256 complement(2224435..2225694) 1 NC_003366.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 2225694 secD 990256 secD Clostridium perfringens str. 13 preprotein translocase subunit SecD NP_562858.1 2224435 R 195102 CDS NP_562859.1 18310925 990257 complement(2225792..2227165) 1 NC_003366.1 similar to pir:E72268 astB/chuR-related protein from Thermotoga maritima (strain MSB8) (463 aa); 27.6% identity in 424 aa overlap; astB/chuR-related protein 2227165 990257 CPE1943 Clostridium perfringens str. 13 astB/chuR-related protein NP_562859.1 2225792 R 195102 CDS NP_562860.1 18310926 990258 complement(2227570..2227839) 1 NC_003366.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 2227839 yajC 990258 yajC Clostridium perfringens str. 13 preprotein translocase subunit YajC NP_562860.1 2227570 R 195102 CDS NP_562861.1 18310927 990259 complement(2227878..2229020) 1 NC_003366.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 2229020 tgt 990259 tgt Clostridium perfringens str. 13 queuine tRNA-ribosyltransferase NP_562861.1 2227878 R 195102 CDS NP_562862.1 18310928 990260 complement(2229044..2230069) 1 NC_003366.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 2230069 queA 990260 queA Clostridium perfringens str. 13 S-adenosylmethionine--tRNA ribosyltransferase-isomerase NP_562862.1 2229044 R 195102 CDS NP_562863.1 18310929 990261 complement(2230091..2231131) 1 NC_003366.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2231131 ruvB 990261 ruvB Clostridium perfringens str. 13 Holliday junction DNA helicase RuvB NP_562863.1 2230091 R 195102 CDS NP_562864.1 18310930 990262 complement(2231145..2231750) 1 NC_003366.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2231750 ruvA 990262 ruvA Clostridium perfringens str. 13 Holliday junction DNA helicase RuvA NP_562864.1 2231145 R 195102 CDS NP_562865.1 18310931 990263 complement(2231978..2232571) 1 NC_003366.1 similar to pir:T44357 hypothetical protein from Clostridium histolyticum (204 aa); 30.3% identity in 165 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2232571 990263 CPE1949 Clostridium perfringens str. 13 hypothetical protein NP_562865.1 2231978 R 195102 CDS NP_562866.1 18310932 990264 complement(2232719..2236264) 1 NC_003366.1 similar to gp:AB028630_4 2', 3'-cyclic nucleotide 2'-phosphodiesterase from Clostridium perfringens (865 aa); 65.7% identity in 867 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; 2', 3'-cyclic nucleotide 2'-phosphodiesterase 2236264 cpdB 990264 cpdB Clostridium perfringens str. 13 2', 3'-cyclic nucleotide 2'-phosphodiesterase NP_562866.1 2232719 R 195102 CDS NP_562867.1 18310933 990265 complement(2236515..2240162) 1 NC_003366.1 similar to gp:AB028630_4 2', 3'-cyclic nucleotide 2'-phosphodiesterase from Clostridium perfringens (865 aa); 99.9% identity in 865 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; 2', 3'-cyclic nucleotide 2'-phosphodiesterase 2240162 cpdA 990265 cpdA Clostridium perfringens str. 13 2', 3'-cyclic nucleotide 2'-phosphodiesterase NP_562867.1 2236515 R 195102 CDS NP_562868.1 18310934 990266 complement(2240411..2241409) 1 NC_003366.1 similar to gp:AB028630_3 protein-tyrosine phosphatase from Clostridium perfringens (332 aa); 95.8% identity in 332 aa overlap; hypothetical protein 2241409 ptp 990266 ptp Clostridium perfringens str. 13 hypothetical protein NP_562868.1 2240411 R 195102 CDS NP_562869.1 18310935 990267 complement(2241885..2242319) 1 NC_003366.1 similar to gp:AB028630_2 bacterial hemoglobin from Clostridium perfringens (144 aa); 100% identity in 144 aa overlap; hemoglobin 2242319 990267 CPE1953 Clostridium perfringens str. 13 hemoglobin NP_562869.1 2241885 R 195102 CDS NP_562870.1 18310936 990268 complement(2242745..2243482) 1 NC_003366.1 similar to gp:AB028630_1 hypothetical protein from Clostridium perfringens (245 aa); 90.6% identity in 245 aa overlap; hypothetical protein 2243482 990268 CPE1954 Clostridium perfringens str. 13 hypothetical protein NP_562870.1 2242745 R 195102 CDS NP_562871.1 18310937 990269 complement(2243608..2244261) 1 NC_003366.1 similar to pir:T44352 hypothetical protein from Clostridium histolyticum (216 aa); 50.7% identity in 213 aa overlap; hypothetical protein 2244261 990269 CPE1955 Clostridium perfringens str. 13 hypothetical protein NP_562871.1 2243608 R 195102 CDS NP_562872.1 18310938 990270 complement(2244267..2245673) 1 NC_003366.1 similar to pir:T44350 hypothetical protein from Clostridium histolyticum (466 aa); 51.1% identity in 466 aa overlap. Also similar to pir:E75208 probable valine-pyruvate transaminase (EC 2.6.1.66) PAB2227 from Pyrococcus abyssi (strain Orsay); GntR family transcriptional regulator 2245673 990270 CPE1956 Clostridium perfringens str. 13 GntR family transcriptional regulator NP_562872.1 2244267 R 195102 CDS NP_562873.1 18310939 990271 complement(2245688..2246590) 1 NC_003366.1 similar to pir:T44349 hypothetical protein from Clostridium histolyticum (298 aa); 32.4% identity in 296 aa overlap; nucleotidyltransferase domain-containing protein 2246590 990271 CPE1957 Clostridium perfringens str. 13 nucleotidyltransferase domain-containing protein NP_562873.1 2245688 R 195102 CDS NP_562874.1 18310940 990272 complement(2246632..2247105) 1 NC_003366.1 no significant homology; hypothetical protein 2247105 990272 CPE1958 Clostridium perfringens str. 13 hypothetical protein NP_562874.1 2246632 R 195102 CDS NP_562875.1 18310941 990273 complement(2247237..2249030) 1 NC_003366.1 similar to pir:T44348 GTP binding protein from Clostridium histolyticum (596 aa); 55.8% identity in 597 aa overlap; GTPase; GTP binding protein 2249030 hflX 990273 hflX Clostridium perfringens str. 13 GTP binding protein NP_562875.1 2247237 R 195102 CDS NP_562876.1 18310942 990274 2249137..2249661 1 NC_003366.1 similar to pir:T44347 hypoxanthine phosphoribosyltransferase (EC 2.4.2.8) from Clostridium histolyticum (175 aa); 65.9% identity in 173 aa overlap; hypoxanthine phosphoribosyltransferase 2249661 hprT 990274 hprT Clostridium perfringens str. 13 hypoxanthine phosphoribosyltransferase NP_562876.1 2249137 D 195102 CDS NP_562877.1 18310943 990275 complement(2249695..2250384) 1 NC_003366.1 similar to pir:T44346 hypothetical protein from Clostridium histolyticum (215 aa); 51.5% identity in 198 aa overlap. 1 transmembrane region was found by PSORT; sporulation protein YunB 2250384 990275 CPE1961 Clostridium perfringens str. 13 sporulation protein YunB NP_562877.1 2249695 R 195102 CDS NP_562878.1 18310944 990276 2250521..2252560 1 NC_003366.1 similar to gpu:AP001512_289 penicillin-binding proteins 1A/1B from Bacillus halodurans (886 aa); 33.4% identity in 613 aa overlap. 1 transmembrane region was found by PSORT; penicillin-binding proteins 1A/1B 2252560 pbpA 990276 pbpA Clostridium perfringens str. 13 penicillin-binding proteins 1A/1B NP_562878.1 2250521 D 195102 CDS NP_562879.1 18310945 990277 2252578..2253012 1 NC_003366.1 no significant homology; hypothetical protein 2253012 990277 CPE1963 Clostridium perfringens str. 13 hypothetical protein NP_562879.1 2252578 D 195102 CDS NP_562880.1 18310946 990278 2253306..2254706 1 NC_003366.1 similar to gpu:AP001516_143 amino acid carrier protein (sodium/alanine symporter) from Bacillus halodurans (470 aa); 51.3% identity in 464 aa overlap. 9 transmembrane regions were found by PSORT.; sodium/alanine symporter; amino acid carrier protein 2254706 990278 CPE1964 Clostridium perfringens str. 13 amino acid carrier protein NP_562880.1 2253306 D 195102 CDS NP_562881.1 18310947 990279 complement(2254743..2255135) 1 NC_003366.1 no significant homology; hypothetical protein 2255135 990279 CPE1965 Clostridium perfringens str. 13 hypothetical protein NP_562881.1 2254743 R 195102 CDS NP_562882.1 18310948 990280 complement(2255183..2256157) 1 NC_003366.1 no significant homology; GNAT family acetyltransferase 2256157 990280 CPE1966 Clostridium perfringens str. 13 GNAT family acetyltransferase NP_562882.1 2255183 R 195102 CDS NP_562883.1 18310949 990281 2256585..2257124 1 NC_003366.1 similar to pir:E72348 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (176 aa); 42.2% identity in 173 aa overlap; DNA-binding protein 2257124 990281 CPE1967 Clostridium perfringens str. 13 DNA-binding protein NP_562883.1 2256585 D 195102 CDS NP_562884.1 18310950 990282 2257156..2258205 1 NC_003366.1 similar to pir:A70180 spermidine/putrescine ABC transporter, ATP-binding protein (potA) homolog from Borrelia burgdorferi (347 aa); 56.7% identity in 344 aa overlap; ATP-binding protein; spermidine/putrescine ABC transporter 2258205 potA 990282 potA Clostridium perfringens str. 13 spermidine/putrescine ABC transporter NP_562884.1 2257156 D 195102 CDS NP_562885.1 18310951 990283 2258208..2259053 1 NC_003366.1 similar to pir:H70179 spermidine/putrescine ABC transporter, permease (potB) homolog from Borrelia burgdorferi (269 aa); 46.1% identity in 204 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; permease; spermidine/putrescine ABC transporter 2259053 potB 990283 potB Clostridium perfringens str. 13 spermidine/putrescine ABC transporter NP_562885.1 2258208 D 195102 CDS NP_562886.1 18310952 990284 2259047..2259847 1 NC_003366.1 similar to pir:G70179 spermidine/putrescine ABC transporter, permease (potC) homolog from Borrelia burgdorferi (263 aa); 41.2% identity in 245 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permease; spermidine/putrescine ABC transporter 2259847 potC 990284 potC Clostridium perfringens str. 13 spermidine/putrescine ABC transporter NP_562886.1 2259047 D 195102 CDS NP_562887.1 18310953 990285 2259849..2260931 1 NC_003366.1 similar to sp:POTD_ECOLI SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN PRECURSOR (SPBP) from Escherichia coli (348 aa); 43.1% identity in 306 aa overlap. N-terminal signal sequence was found by PSORT; binding protein; spermidine/putrescine ABC transporter 2260931 potD 990285 potD Clostridium perfringens str. 13 spermidine/putrescine ABC transporter NP_562887.1 2259849 D 195102 CDS NP_562888.1 18310954 990286 complement(2260966..2261397) 1 NC_003366.1 similar to sp:NDK_METTH NUCLEOSIDE DIPHOSPHATE KINASE (EC 2.7.4.6) (NDK) (NDP KINASE) from Methanobacterium thermoautotrophicum (151 aa); 52.9% identity in 140 aa overlap; nucleoside diphosphate kinase 2261397 ndk 990286 ndk Clostridium perfringens str. 13 nucleoside diphosphate kinase NP_562888.1 2260966 R 195102 CDS NP_562889.1 18310955 990287 2261582..2261851 1 NC_003366.1 similar to sp:ACYP_BACSU ACYLPHOSPHATASE (EC 3.6.1.7) (ACYLPHOSPHATE PHOSPHOHYDROLASE) from Bacillus subtilis (91 aa); 36.8% identity in 87 aa overlap; acylphosphatase 2261851 990287 CPE1973 Clostridium perfringens str. 13 acylphosphatase NP_562889.1 2261582 D 195102 CDS NP_562890.1 18310956 990288 complement(2261991..2262146) 1 NC_003366.1 no significant homology; hypothetical protein 2262146 990288 CPE1974 Clostridium perfringens str. 13 hypothetical protein NP_562890.1 2261991 R 195102 CDS NP_562891.1 18310957 990289 complement(2262316..2262882) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2262882 990289 CPE1975 Clostridium perfringens str. 13 hypothetical protein NP_562891.1 2262316 R 195102 CDS NP_562892.1 18310958 990290 2263061..2264332 1 NC_003366.1 similar to gpu:AP001512_122 D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) from Bacillus halodurans (387 aa); 33.1% identity in 257 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; penicilin binding protein 5; D-alanyl-D-alanine carboxypeptidase 2264332 dacF 990290 dacF Clostridium perfringens str. 13 D-alanyl-D-alanine carboxypeptidase NP_562892.1 2263061 D 195102 CDS NP_562893.1 18310959 990291 complement(2264387..2265031) 1 NC_003366.1 hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr dephosphorylation; pyrophosphatase PpaX 2265031 990291 CPE1977 Clostridium perfringens str. 13 pyrophosphatase PpaX NP_562893.1 2264387 R 195102 CDS NP_562894.1 18310960 990292 2265621..2266631 1 NC_003366.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 2266631 asnA 990292 asnA Clostridium perfringens str. 13 asparagine synthetase AsnA NP_562894.1 2265621 D 195102 CDS NP_562895.1 18310961 990293 2266757..2267575 1 NC_003366.1 partially similar to pir:B69196 conserved hypothetical protein MTH72 from Methanobacterium thermoautotrophicum (strain Delta H) (403 aa); 24.7% identity in 186 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 2267575 990293 CPE1979 Clostridium perfringens str. 13 hypothetical protein NP_562895.1 2266757 D 195102 CDS NP_562896.1 18310962 990294 2267687..2268064 1 NC_003366.1 similar to sp:YWBH_BACSU HYPOTHETICAL 14.3 KDA PROTEIN IN EPR-GALK INTERGENIC REGION from Bacillus subtilis (128 aa); 30.2% identity in 116 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; LrgA family protein 2268064 990294 CPE1980 Clostridium perfringens str. 13 LrgA family protein NP_562896.1 2267687 D 195102 CDS NP_562897.1 18310963 990295 2268057..2268767 1 NC_003366.1 similar to gpu:AP001518_99 BH3268 gene product from Bacillus halodurans (227 aa); 35.3% identity in 221 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; lrgB-like family protein 2268767 990295 CPE1981 Clostridium perfringens str. 13 lrgB-like family protein NP_562897.1 2268057 D 195102 CDS NP_562898.1 18310964 990296 2268864..2269319 1 NC_003366.1 no significant homology; hypothetical protein 2269319 990296 CPE1982 Clostridium perfringens str. 13 hypothetical protein NP_562898.1 2268864 D 195102 CDS NP_562899.1 18310965 990297 complement(2269532..2271694) 1 NC_003366.1 similar to gp:AF192329_12 DNA topoisomerase III-like protein from Enterococcus faecalis (693 aa); 30.5% identity in 696 aa overlap; DNA topoisomerase 2271694 topB 990297 topB Clostridium perfringens str. 13 DNA topoisomerase NP_562899.1 2269532 R 195102 CDS NP_562900.1 18310966 990298 complement(2271934..2273091) 1 NC_003366.1 similar to gpu:AP001517_130 BH3008 gene product from Bacillus halodurans (382 aa); 44.7% identity in 380 aa overlap; hypothetical protein 2273091 990298 CPE1984 Clostridium perfringens str. 13 hypothetical protein NP_562900.1 2271934 R 195102 CDS NP_562901.1 18310967 990299 complement(2273254..2273760) 1 NC_003366.1 similar to pir:A57438 tryptophan-rich sensory protein from Rhodobacter sphaeroides (strain 2.4.1) (158 aa); 38.7% identity in 124 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; TspO/MBR family protein 2273760 990299 CPE1985 Clostridium perfringens str. 13 TspO/MBR family protein NP_562901.1 2273254 R 195102 CDS NP_562902.1 18310968 990300 complement(2273797..2275833) 1 NC_003366.1 similar to prf:2314195D adenylate cyclase from Anabaena sp. (1155 aa); 27.8% identity in 227 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; sensor histidine kinase 2275833 990300 CPE1986 Clostridium perfringens str. 13 sensor histidine kinase NP_562902.1 2273797 R 195102 CDS NP_562903.1 18310969 990301 complement(2275823..2277709) 1 NC_003366.1 similar to sp:RESE_BACSU SENSOR PROTEIN RESE (EC 2.7.3.-) from Bacillus subtilis (589 aa); 29.4% identity in 228 aa overlap. 8 transmembrane regions were found by PSORT.; sensor histidine kinase 2277709 990301 CPE1987 Clostridium perfringens str. 13 sensor histidine kinase NP_562903.1 2275823 R 195102 CDS NP_562904.1 18310970 990302 complement(2277830..2278765) 1 NC_003366.1 similar to pir:B69196 conserved hypothetical protein MTH72 from Methanobacterium thermoautotrophicum (strain Delta H) (403 aa); 29.4% identity in 187 aa overlap; hypothetical protein 2278765 990302 CPE1988 Clostridium perfringens str. 13 hypothetical protein NP_562904.1 2277830 R 195102 CDS NP_562905.1 18310971 990303 complement(2278886..2279806) 1 NC_003366.1 similar to pir:D83233 hypothetical protein PA3301 from Pseudomonas aeruginosa (strain PAO1) (316 aa); 38.5% identity in 283 aa overlap; alpha/beta fold family hydrolase 2279806 990303 CPE1989 Clostridium perfringens str. 13 alpha/beta fold family hydrolase NP_562905.1 2278886 R 195102 CDS NP_562906.1 18310972 990304 complement(2279929..2280525) 1 NC_003366.1 similar to gp:BYPK1CAP_1 serine/threonine kinase from Bacillus thuringiensis (385 aa); 27.8% identity in 162 aa overlap; hypothetical protein 2280525 990304 CPE1990 Clostridium perfringens str. 13 hypothetical protein NP_562906.1 2279929 R 195102 CDS NP_562907.1 18310973 990306 complement(2280811..2281941) 1 NC_003366.1 similar to gp:AB001488_11 ydaJ gene product from Bacillus subtilis (364 aa); 27.1% identity in 314 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2281941 990306 CPE1991 Clostridium perfringens str. 13 hypothetical protein NP_562907.1 2280811 R 195102 CDS NP_562908.1 18310974 990307 complement(2281978..2282523) 1 NC_003366.1 partially similar to pir:S75975 hypothetical protein from Synechocystis sp. (strain PCC 6803) (847 aa); 34.3% identity in 134 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2282523 990307 CPE1992 Clostridium perfringens str. 13 hypothetical protein NP_562908.1 2281978 R 195102 CDS NP_562909.1 18310975 990308 complement(2282533..2283132) 1 NC_003366.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 2283132 coaE 990308 coaE Clostridium perfringens str. 13 dephospho-CoA kinase NP_562909.1 2282533 R 195102 CDS NP_562910.1 18310976 990309 complement(2283149..2285749) 1 NC_003366.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 2285749 polA 990309 polA Clostridium perfringens str. 13 DNA polymerase I NP_562910.1 2283149 R 195102 CDS NP_562911.1 18310977 990310 complement(2286083..2287000) 1 NC_003366.1 catalyzes the formation of glutamate from glutamine; glutaminase 2287000 990310 CPE1995 Clostridium perfringens str. 13 glutaminase NP_562911.1 2286083 R 195102 CDS NP_562912.1 18310978 990311 2287239..2287754 1 NC_003366.1 no significant homology; hypothetical protein 2287754 990311 CPE1996 Clostridium perfringens str. 13 hypothetical protein NP_562912.1 2287239 D 195102 CDS NP_562913.1 18310979 990312 2287837..2289072 1 NC_003366.1 similar to sp:AMP2_BACST AMINOPEPTIDASE II (EC 3.4.11.-) (AP-II) from Bacillus stearothermophilus (413 aa); 54% identity in 411 aa overlap; aminopeptidase 2289072 990312 CPE1997 Clostridium perfringens str. 13 aminopeptidase NP_562913.1 2287837 D 195102 CDS NP_562914.1 18310980 990313 complement(2289285..2290334) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2290334 990313 CPE1998 Clostridium perfringens str. 13 hypothetical protein NP_562914.1 2289285 R 195102 CDS NP_562915.1 18310981 990314 complement(2290351..2291361) 1 NC_003366.1 partially similar to pir:T12792 hypothetical protein yomE from pir:T12792 hypothetical protein yomE - Bacillus subtilis phage SPBc2 (644 aa); 30.4% identity in 168 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2291361 990314 CPE1999 Clostridium perfringens str. 13 hypothetical protein NP_562915.1 2290351 R 195102 CDS NP_562916.1 18310982 990315 complement(2292272..2292529) 1 NC_003366.1 no significant homology 2 transmembrane regions were found by PSORT.; hypothetical protein 2292529 990315 CPE2000 Clostridium perfringens str. 13 hypothetical protein NP_562916.1 2292272 R 195102 CDS NP_562917.1 18310983 990316 complement(2292691..2293380) 1 NC_003366.1 similar to N-terminal of pir:D69376 conserved hypothetical protein AF1012 from Archaeoglobus fulgidus (312 aa); 27.1% identity in 129 aa overlap; radical SAM domain-containing protein 2293380 990316 CPE2001 Clostridium perfringens str. 13 radical SAM domain-containing protein NP_562917.1 2292691 R 195102 CDS NP_562918.1 18310984 990317 complement(2293398..2293955) 1 NC_003366.1 similar to N-terminal of gp:AF036485_6 hypothetical protein from Plasmid pNZ4000 (200 aa); 20.9% identity in 177 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 2293955 990317 CPE2002 Clostridium perfringens str. 13 hypothetical protein NP_562918.1 2293398 R 195102 CDS NP_562919.1 18310985 990318 complement(2293974..2294954) 1 NC_003366.1 similar to gp:SPBC1683_6 inosine-uridine preferring nucleoside hydrolase from Schizosaccharomyces pombe (310 aa); 36.3% identity in 303 aa overlap; nucleoside hydrolase, IUNH family 2294954 990318 CPE2003 Clostridium perfringens str. 13 nucleoside hydrolase, IUNH family NP_562919.1 2293974 R 195102 CDS NP_562920.1 18310986 990319 complement(2295468..2296256) 1 NC_003366.1 similar to gp:SCC30_9 hypothetical protein SCC30.09c from Streptomyces coelicolor A3(2) (285 aa); 34.1% identity in 258 aa overlap; hypothetical protein 2296256 990319 CPE2004 Clostridium perfringens str. 13 hypothetical protein NP_562920.1 2295468 R 195102 CDS NP_562921.1 18310987 990320 complement(2296256..2296945) 1 NC_003366.1 similar to gp:D78182_2 ORF3 gene product from Streptococcus mutans (232 aa); 33.6% identity in 229 aa overlap; hypothetical protein 2296945 990320 CPE2005 Clostridium perfringens str. 13 hypothetical protein NP_562921.1 2296256 R 195102 CDS NP_562922.1 18310988 990321 complement(2296959..2297846) 1 NC_003366.1 partially similar to sp:YORS_CLOAB HYPOTHETICAL 14.0 KDA PROTEIN IN SIGA 3'REGION (ORF S) from Clostridium acetobutylicum (118 aa); 25.9% identity in 116 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 2297846 990321 CPE2006 Clostridium perfringens str. 13 hypothetical protein NP_562922.1 2296959 R 195102 CDS NP_562923.1 18310989 990322 complement(2298082..2299203) 1 NC_003366.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD 2299203 sigA 990322 sigA Clostridium perfringens str. 13 RNA polymerase sigma factor RpoD NP_562923.1 2298082 R 195102 CDS NP_562924.1 18310990 990323 complement(2299209..2300996) 1 NC_003366.1 synthesizes RNA primers at the replication forks; DNA primase 2300996 dnaG 990323 dnaG Clostridium perfringens str. 13 DNA primase NP_562924.1 2299209 R 195102 CDS NP_562925.1 18310991 990324 complement(2301165..2302193) 1 NC_003366.1 dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2302193 dgtP 990324 dgtP Clostridium perfringens str. 13 deoxyguanosinetriphosphate triphosphohydrolase-like protein NP_562925.1 2301165 R 195102 CDS NP_562926.1 18310992 990325 2302395..2303474 1 NC_003366.1 similar to pir:F69987 spore coat protein homolog ytaA from Bacillus subtilis (357 aa); 26.7% identity in 266 aa overlap; spore coat protein 2303474 cotS 990325 cotS Clostridium perfringens str. 13 spore coat protein NP_562926.1 2302395 D 195102 CDS NP_562927.1 18310993 990326 complement(2303526..2306156) 1 NC_003366.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 2306156 podK 990326 podK Clostridium perfringens str. 13 pyruvate phosphate dikinase NP_562927.1 2303526 R 195102 CDS NP_562928.1 18310994 990327 complement(2306257..2306889) 1 NC_003366.1 similar to gpu:AP001511_261 BH1372 gene product from Bacillus halodurans (214 aa); 47.6% identity in 210 aa overlap; hypothetical protein 2306889 990327 CPE2012 Clostridium perfringens str. 13 hypothetical protein NP_562928.1 2306257 R 195102 CDS NP_562929.1 18310995 990328 complement(2307094..2307720) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2307720 990328 CPE2013 Clostridium perfringens str. 13 hypothetical protein NP_562929.1 2307094 R 195102 CDS NP_562930.1 18310996 990329 complement(2307726..2308403) 1 NC_003366.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 2308403 recO 990329 recO Clostridium perfringens str. 13 DNA repair protein RecO NP_562930.1 2307726 R 195102 CDS NP_562931.1 18310997 990330 complement(2308479..2309369) 1 NC_003366.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 2309369 era 990330 era Clostridium perfringens str. 13 GTP-binding protein Era NP_562931.1 2308479 R 195102 CDS NP_562932.1 18310998 990331 complement(2309378..2309776) 1 NC_003366.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2309776 990331 CPE2016 Clostridium perfringens str. 13 cytidine deaminase NP_562932.1 2309378 R 195102 CDS NP_562933.1 18310999 990332 complement(2309820..2310518) 1 NC_003366.1 N-terminal region is similar to gpu:AP001511_253 diacylglycerol kinase from Bacillus halodurans (130 aa); 37.6% identity in 109 aa overlap. 6 transmembrane regions were found by PSORT.; diacylglycerol kinase/PAP2 family protein 2310518 dgkA 990332 dgkA Clostridium perfringens str. 13 diacylglycerol kinase/PAP2 family protein NP_562933.1 2309820 R 195102 CDS NP_562934.1 18311000 990333 complement(2310546..2311052) 1 NC_003366.1 similar to sp:YQFG_BACSU HYPOTHETICAL 17.8 KDA PROTEIN IN PHOH-DGKA INTERGENIC REGION from Bacillus subtilis (157 aa); 39.2% identity in 143 aa overlap; metalloprotease 2311052 990333 CPE2018 Clostridium perfringens str. 13 metalloprotease NP_562934.1 2310546 R 195102 CDS NP_562935.1 18311001 990334 complement(2311054..2313108) 1 NC_003366.1 similar to gpu:AP001511_251 BH1362 gene product from Bacillus halodurans (721 aa); 33.2% identity in 669 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; hypothetical protein 2313108 990334 CPE2019 Clostridium perfringens str. 13 hypothetical protein NP_562935.1 2311054 R 195102 CDS NP_562936.1 18311002 990335 complement(2313145..2314281) 1 NC_003366.1 similar to sp:YQFD_BACSU HYPOTHETICAL 45.7 KDA PROTEIN IN RPSU-PHOH INTEREGENIC REGION from Bacillus subtilis (398 aa); 23.8% identity in 366 aa overlap. Also similar to gp:BMAJ4829_4 spoIV gene product from Bacillus megaterium. 1 transmembrane region was found by PSORT; stage IV sporulation protein 2314281 spoIV 990335 spoIV Clostridium perfringens str. 13 stage IV sporulation protein NP_562936.1 2313145 R 195102 CDS NP_562937.1 18311003 990336 complement(2314283..2314564) 1 NC_003366.1 similar to sp:YQFC_BACSU HYPOTHETICAL 10.8 KDA PROTEIN IN RPSU-PHOH INTEREGENIC REGION from Bacillus subtili (93 aa); 30.1% identity in 93 aa overlap; sporulation protein YqfC 2314564 990336 CPE2021 Clostridium perfringens str. 13 sporulation protein YqfC NP_562937.1 2314283 R 195102 CDS NP_562938.1 18311004 990337 complement(2314789..2315238) 1 NC_003366.1 similar to pir:T43743 conserved hypothetical protein orf17 from Listeria monocytogenes (151 aa); 45.2% identity in 146 aa overlap; GatB/Yqey domain-containing protein 2315238 990337 CPE2022 Clostridium perfringens str. 13 GatB/Yqey domain-containing protein NP_562938.1 2314789 R 195102 CDS NP_562939.1 18311005 990338 complement(2315288..2315464) 1 NC_003366.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 2315464 rpsU 990338 rpsU Clostridium perfringens str. 13 30S ribosomal protein S21 NP_562939.1 2315288 R 195102 CDS NP_562940.1 18311006 990339 complement(2315584..2315928) 1 NC_003366.1 similar to pir:F83564 probable HIT family protein PA0656 from Pseudomonas aeruginosa (strain PAO1) (112 aa); 58% identity in 112 aa overlap; HIT family protein 2315928 990339 CPE2024 Clostridium perfringens str. 13 HIT family protein NP_562940.1 2315584 R 195102 CDS NP_562941.1 18311007 990340 complement(2315997..2317301) 1 NC_003366.1 similar to gp:AF036764_3 unknown from Clostridium acetobutylicum (386 aa); 63.2% identity in 386 aa overlap; MiaB-like tRNA modifying protein 2317301 990340 CPE2025 Clostridium perfringens str. 13 MiaB-like tRNA modifying protein NP_562941.1 2315997 R 195102 CDS NP_562942.1 18311008 990341 complement(2317301..2318053) 1 NC_003366.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 2318053 990341 CPE2026 Clostridium perfringens str. 13 16S ribosomal RNA methyltransferase RsmE NP_562942.1 2317301 R 195102 CDS NP_562943.1 18311009 990342 complement(2318076..2319017) 1 NC_003366.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 2319017 prmA 990342 prmA Clostridium perfringens str. 13 50S ribosomal protein L11 methyltransferase NP_562943.1 2318076 R 195102 CDS NP_562944.1 18311010 990343 complement(2319244..2319600) 1 NC_003366.1 similar to gpu:AP001516_76 transcriptional regulator (GntR family) from Bacillus halodurans (123 aa); 52.5% identity in 118 aa overlap; GntR family; GntR family transcriptional regulator 2319600 990343 CPE2028 Clostridium perfringens str. 13 GntR family transcriptional regulator NP_562944.1 2319244 R 195102 CDS NP_562945.1 18311011 990344 complement(2319602..2320780) 1 NC_003366.1 partially similar to gp:PFMAL3P2_16 PFC0235w gene product from Plasmodium falciparum (1213 aa); 25.2% identity in 313 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2320780 990344 CPE2029 Clostridium perfringens str. 13 hypothetical protein NP_562945.1 2319602 R 195102 CDS NP_562946.1 18311012 990345 complement(2320796..2321623) 1 NC_003366.1 similar to gpu:AP001516_78 BH2649 gene product from Bacillus halodurans (274 aa); 23.3% identity in 202 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein 2321623 990345 CPE2030 Clostridium perfringens str. 13 hypothetical protein NP_562946.1 2320796 R 195102 CDS NP_562947.1 18311013 990346 complement(2321610..2322302) 1 NC_003366.1 similar to gpu:AP001516_77 ABC transporter (ATP-binding protein) from Bacillus halodurans (229 aa); 41.4% identity in 227 aa overlap; ATP-binding protein; ABC transporter 2322302 990346 CPE2031 Clostridium perfringens str. 13 ABC transporter NP_562947.1 2321610 R 195102 CDS NP_562948.1 18311014 990347 complement(2322479..2323642) 1 NC_003366.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 2323642 dnaJ 990347 dnaJ Clostridium perfringens str. 13 molecular chaperone DnaJ NP_562948.1 2322479 R 195102 CDS NP_562949.1 18311015 990348 complement(2323756..2325615) 1 NC_003366.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 2325615 dnaK 990348 dnaK Clostridium perfringens str. 13 molecular chaperone DnaK NP_562949.1 2323756 R 195102 CDS NP_562950.1 18311016 990349 complement(2325672..2326298) 1 NC_003366.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 2326298 grpE 990349 grpE Clostridium perfringens str. 13 heat shock protein GrpE NP_562950.1 2325672 R 195102 CDS NP_562951.1 18311017 990350 complement(2326329..2327348) 1 NC_003366.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 2327348 hrcA 990350 hrcA Clostridium perfringens str. 13 heat-inducible transcription repressor NP_562951.1 2326329 R 195102 CDS NP_562952.1 18311018 990351 complement(2327545..2328678) 1 NC_003366.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2328678 hemN 990351 hemN Clostridium perfringens str. 13 coproporphyrinogen III oxidase NP_562952.1 2327545 R 195102 CDS NP_562953.1 18311019 990352 complement(2328948..2329217) 1 NC_003366.1 no significant homology; hypothetical protein 2329217 990352 CPE2037 Clostridium perfringens str. 13 hypothetical protein NP_562953.1 2328948 R 195102 CDS NP_562954.1 18311020 990353 complement(2329405..2331207) 1 NC_003366.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2331207 lepA 990353 lepA Clostridium perfringens str. 13 GTP-binding protein LepA NP_562954.1 2329405 R 195102 CDS NP_562955.1 18311021 990354 complement(2331328..2331690) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2331690 990354 CPE2039 Clostridium perfringens str. 13 hypothetical protein NP_562955.1 2331328 R 195102 CDS NP_562956.1 18311022 990355 complement(2331745..2332830) 1 NC_003366.1 similar to gpu:AP001513_176 stage II sporulation protein P from Bacillus halodurans (377 aa); 31.9% identity in 204 aa overlap. N-terminal signal sequence was found by PSORT; stage II sporulation protein P 2332830 spoIIP 990355 spoIIP Clostridium perfringens str. 13 stage II sporulation protein P NP_562956.1 2331745 R 195102 CDS NP_562957.1 18311023 990356 complement(2332979..2333956) 1 NC_003366.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination; germination protease 2333956 gpr 990356 gpr Clostridium perfringens str. 13 germination protease NP_562957.1 2332979 R 195102 CDS NP_562958.1 18311024 990357 2334152..2334415 1 NC_003366.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 2334415 rpsT 990357 rpsT Clostridium perfringens str. 13 30S ribosomal protein S20 NP_562958.1 2334152 D 195102 CDS NP_562959.1 18311025 990358 complement(2334511..2335557) 1 NC_003366.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 2335557 holA 990358 holA Clostridium perfringens str. 13 DNA polymerase III subunit delta NP_562959.1 2334511 R 195102 CDS NP_562960.1 18311026 990359 complement(2335601..2337211) 1 NC_003366.1 partially similar to gpu:AP001511_224 late competence operon required for DNA binding and uptake from Bacillus halodurans (773 aa); 29.9% identity in 177 aa overlap. N-terminal signal sequence and 10 transmembrane regions were found by PSORT.; hypothetical protein 2337211 990359 CPE2044 Clostridium perfringens str. 13 hypothetical protein NP_562960.1 2335601 R 195102 CDS NP_562961.1 18311027 990360 complement(2337263..2337628) 1 NC_003366.1 similar to gpu:AP001512_157 sporulation protein from Bacillus halodurans (116 aa); 38.9% identity in 113 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; stage V sporulation protein AE 2337628 spoVAE 990360 spoVAE Clostridium perfringens str. 13 stage V sporulation protein AE NP_562961.1 2337263 R 195102 CDS NP_562962.1 18311028 990361 complement(2337684..2338703) 1 NC_003366.1 similar to sp:SP54_BACSU STAGE V SPORULATION PROTEIN AD from Bacillus subtilis (338 aa); 39.2% identity in 332 aa overlap; stage V sporulation protein AD 2338703 spoVAD 990361 spoVAD Clostridium perfringens str. 13 stage V sporulation protein AD NP_562962.1 2337684 R 195102 CDS NP_562963.1 18311029 990362 complement(2338709..2339176) 1 NC_003366.1 similar to gpu:AP001512_155 stage V sporulation protein AC from Bacillus halodurans (159 aa); 49.7% identity in 145 aa overlap. 3 transmembrane regions were found by PSORT.; stage V sporulation protein AC 2339176 spoVAC 990362 spoVAC Clostridium perfringens str. 13 stage V sporulation protein AC NP_562963.1 2338709 R 195102 CDS NP_562964.1 18311030 990363 complement(2339314..2340069) 1 NC_003366.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.; sporulation sigma factor SigF 2340069 sigF 990363 sigF Clostridium perfringens str. 13 sporulation sigma factor SigF NP_562964.1 2339314 R 195102 CDS NP_562965.1 18311031 990364 complement(2340087..2340509) 1 NC_003366.1 binds to sigma F preventing its association with RNA polymerase during sporulation; anti-sigma F factor 2340509 spoIIAB 990364 spoIIAB Clostridium perfringens str. 13 anti-sigma F factor NP_562965.1 2340087 R 195102 CDS NP_562966.1 18311032 990365 complement(2340523..2340858) 1 NC_003366.1 similar to sp:SP21_BACME ANTI-SIGMA F FACTOR ANTAGONIST (STAGE II SPORULATION PROTEIN AA) from Bacillus megaterium (116 aa); 48.6% identity in 107 aa overlap; stage II sporulation protein AA; anti-sigma F factor antagonist 2340858 spoIIAA 990365 spoIIAA Clostridium perfringens str. 13 anti-sigma F factor antagonist NP_562966.1 2340523 R 195102 CDS NP_562967.1 18311033 990366 complement(2340992..2343277) 1 NC_003366.1 similar to pir:H82392 ATP-dependent LA-related proteinase VCA0975 from Vibrio cholerae (group O1 strain N16961) (786 aa); 31.5% identity in 715 aa overlap; ATP-dependent protease 2343277 990366 CPE2051 Clostridium perfringens str. 13 ATP-dependent protease NP_562967.1 2340992 R 195102 CDS NP_562968.1 18311034 990367 complement(2343478..2344152) 1 NC_003366.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 2344152 deoC 990367 deoC Clostridium perfringens str. 13 deoxyribose-phosphate aldolase NP_562968.1 2343478 R 195102 CDS NP_562969.1 18311035 990368 2344409..2344816 1 NC_003366.1 no significant homology; hypothetical protein 2344816 990368 CPE2053 Clostridium perfringens str. 13 hypothetical protein NP_562969.1 2344409 D 195102 CDS NP_562970.1 18311036 990369 complement(2345077..2347626) 1 NC_003366.1 similar to pir:H69877 calcium-transporting ATPase homolog yloB from Bacillus subtilis (890 aa); 48.7% identity in 649 aa overlap. 9 transmembrane regions were found by PSORT.; cation-transporting ATPase 2347626 990369 CPE2054 Clostridium perfringens str. 13 cation-transporting ATPase NP_562970.1 2345077 R 195102 CDS NP_562971.1 18311037 990370 2347871..2349520 1 NC_003366.1 catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 2349520 990370 CPE2055 Clostridium perfringens str. 13 manganese-dependent inorganic pyrophosphatase NP_562971.1 2347871 D 195102 CDS NP_562972.1 18311038 990371 complement(2349564..2350070) 1 NC_003366.1 similar to pir:H81344 hypothetical protein Cj0733 from Campylobacter jejuni (strain NCTC 11168) (212 aa); 28.2% identity in 177 aa overlap; hypothetical protein 2350070 990371 CPE2056 Clostridium perfringens str. 13 hypothetical protein NP_562972.1 2349564 R 195102 CDS NP_562973.1 18311039 990372 complement(2350288..2350662) 1 NC_003366.1 no significant homology; hypothetical protein 2350662 990372 CPE2057 Clostridium perfringens str. 13 hypothetical protein NP_562973.1 2350288 R 195102 CDS NP_562974.1 18311040 990373 complement(2350872..2352266) 1 NC_003366.1 similar to gp:AB010789_2 glutamate decarboxylase from Lactococcus lactis (466 aa); 70.5% identity in 464 aa overlap; glutamate decarboxylase 2352266 990373 CPE2058 Clostridium perfringens str. 13 glutamate decarboxylase NP_562974.1 2350872 R 195102 CDS NP_562975.1 18311041 990374 complement(2352852..2353907) 1 NC_003366.1 similar to sp:YHIM_ECOLI HYPOTHETICAL 39.2 KDA PROTEIN IN RHSB-PIT INTERGENIC REGION from Escherichia coli (364 aa); 49.2% identity in 356 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein 2353907 990374 CPE2059 Clostridium perfringens str. 13 hypothetical protein NP_562975.1 2352852 R 195102 CDS NP_562976.1 18311042 990375 complement(2354027..2355445) 1 NC_003366.1 similar to gp:AF309077_1 glutamate:gamma-aminobutyrate antiporter from Listeria monocytogenes (501 aa); 68.8% identity in 464 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; glutamate gamma-aminobutyrate antiporter 2355445 990375 CPE2060 Clostridium perfringens str. 13 glutamate gamma-aminobutyrate antiporter NP_562976.1 2354027 R 195102 CDS NP_562977.1 18311043 990376 complement(2356148..2359663) 1 NC_003366.1 similar to gp:CPA17727_2 pyruvate ferredoxin oxidoreductase from Clostridium pasteurianum (1175 aa); 73.6% identity in 1167 aa overlap; pyruvate-flavodoxin oxidoreductase 2359663 990376 CPE2061 Clostridium perfringens str. 13 pyruvate-flavodoxin oxidoreductase NP_562977.1 2356148 R 195102 CDS NP_562978.1 18311044 990377 complement(2359768..2360193) 1 NC_003366.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 2360193 990377 CPE2062 Clostridium perfringens str. 13 flavodoxin NP_562978.1 2359768 R 195102 CDS NP_562979.1 18311045 990378 complement(2360400..2361473) 1 NC_003366.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 2361473 murG 990378 murG Clostridium perfringens str. 13 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase NP_562979.1 2360400 R 195102 CDS NP_562980.1 18311046 990379 2361658..2361837 1 NC_003366.1 similar to pir:JN0082 small acid-soluble spore protein C1 from Clostridium perfringens (59 aa); 100% identity in 59 aa overlap; small acid-soluble spore protein C1 2361837 990379 CPE2064 Clostridium perfringens str. 13 small acid-soluble spore protein C1 NP_562980.1 2361658 D 195102 CDS NP_562981.1 18311047 990380 complement(2361959..2363737) 1 NC_003366.1 similar to pir:H69980 single-strand DNA-specific exonuclease homolog yrvE from Bacillus subtilis (786 aa); 34.5% identity in 585 aa overlap. 1 transmembrane region was found by PSORT; single-stranded-DNA-specific exonuclease RecJ 2363737 recJ 990380 recJ Clostridium perfringens str. 13 single-stranded-DNA-specific exonuclease RecJ NP_562981.1 2361959 R 195102 CDS NP_562982.1 18311048 990381 complement(2363749..2364960) 1 NC_003366.1 similar to sp:Y219_RICPR HYPOTHETICAL ZINC PROTEASE RP219 (EC 3.4.99.-) from Rickettsia prowazekii (412 aa); 24.5% identity in 388 aa overlap; M16 family peptidase 2364960 990381 CPE2066 Clostridium perfringens str. 13 M16 family peptidase NP_562982.1 2363749 R 195102 CDS NP_562983.1 18311049 990382 complement(2365174..2365755) 1 NC_003366.1 similar to pir:C81363 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein Cj0899c from Campylobacter jejuni (strain NCTC 11168) (187 aa); 31.7% identity in 183 aa overlap. 1 transmembrane region was found by PSORT; DJ-1 family protein 2365755 990382 CPE2067 Clostridium perfringens str. 13 DJ-1 family protein NP_562983.1 2365174 R 195102 CDS NP_562984.1 18311050 990383 complement(2365761..2368700) 1 NC_003366.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 2368700 parC 990383 parC Clostridium perfringens str. 13 DNA topoisomerase IV subunit A NP_562984.1 2365761 R 195102 CDS NP_562985.1 18311051 990384 complement(2368714..2370666) 1 NC_003366.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 2370666 parE 990384 parE Clostridium perfringens str. 13 DNA topoisomerase IV subunit B NP_562985.1 2368714 R 195102 CDS NP_562986.1 18311052 990385 complement(2370650..2371720) 1 NC_003366.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 2371720 990385 CPE2070 Clostridium perfringens str. 13 tRNA 2-selenouridine synthase NP_562986.1 2370650 R 195102 CDS NP_562987.1 18311053 990386 complement(2371965..2373365) 1 NC_003366.1 similar to prf:2302324B rfbB gene from Salmonella enterica (459 aa); 32% identity in 406 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; glycosyl transferase family protein 2373365 990386 CPE2071 Clostridium perfringens str. 13 glycosyl transferase family protein NP_562987.1 2371965 R 195102 CDS NP_562988.1 18311054 990387 2374217..2375455 1 NC_003366.1 similar to gp:BCE243712_10 UV-endonuclease from Bacillus cereus (317 aa); 31.4% identity in 293 aa overlap; UV damage endonuclease 2375455 990387 CPE2072 Clostridium perfringens str. 13 UV damage endonuclease NP_562988.1 2374217 D 195102 CDS NP_562989.1 18311055 990388 2375540..2376148 1 NC_003366.1 similar to pir:H69987 hypothetical protein ytaF from Bacillus subtilis (159 aa); 34% identity in 144 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; sporulation protein YtaF 2376148 990388 CPE2073 Clostridium perfringens str. 13 sporulation protein YtaF NP_562989.1 2375540 D 195102 CDS NP_562990.1 18311056 990389 complement(2376317..2377486) 1 NC_003366.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 2377486 990389 CPE2074 Clostridium perfringens str. 13 trans-2-enoyl-CoA reductase NP_562990.1 2376317 R 195102 CDS NP_562991.1 18311057 990390 complement(2377731..2379209) 1 NC_003366.1 similar to pir:B64829 membrane protein b0899 from Escherichia coli (540 aa); 56.6% identity in 486 aa overlap; amino acid permease 2379209 990390 CPE2075 Clostridium perfringens str. 13 amino acid permease NP_562991.1 2377731 R 195102 CDS NP_562992.1 18311058 990391 complement(2379557..2381797) 1 NC_003366.1 similar to gp:AAC252161_6 alpha-glucosidase from Alicyclobacillus acidocaldarius (728 aa); 43.5% identity in 591 aa overlap; alpha-glucosidase 2381797 990391 CPE2076 Clostridium perfringens str. 13 alpha-glucosidase NP_562992.1 2379557 R 195102 CDS NP_562993.1 18311059 990392 complement(2381846..2382739) 1 NC_003366.1 similar to gpu:AP001509_224 transcriptional regulator from Bacillus halodurans (302 aa); 35.5% identity in 293 aa overlap. 1 transmembrane region was found by PSORT; ROK family protein 2382739 990392 CPE2077 Clostridium perfringens str. 13 ROK family protein NP_562993.1 2381846 R 195102 CDS NP_562994.1 18311060 990393 complement(2382880..2384328) 1 NC_003366.1 similar to gpu:AP001509_234 BH0796 gene product from Bacillus halodurans (500 aa); 45.8% identity in 474 aa overlap; hypothetical protein 2384328 990393 CPE2078 Clostridium perfringens str. 13 hypothetical protein NP_562994.1 2382880 R 195102 CDS NP_562995.1 18311061 990394 2384713..2385207 1 NC_003366.1 similar to pir:E82970 hypothetical protein PA5409 from Pseudomonas aeruginosa (strain PAO1) (186 aa); 28.3% identity in 106 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 2385207 990394 CPE2079 Clostridium perfringens str. 13 hypothetical protein NP_562995.1 2384713 D 195102 CDS NP_562996.1 18311062 990395 complement(2385275..2388409) 1 NC_003366.1 similar to gpu:AP001509_229 alpha-mannosidase from Bacillus halodurans (1039 aa); 37.2% identity in 1038 aa overlap; alpha-mannosidase 2388409 990395 CPE2080 Clostridium perfringens str. 13 alpha-mannosidase NP_562996.1 2385275 R 195102 CDS NP_562997.1 18311063 990396 complement(2388727..2389683) 1 NC_003366.1 similar to gpu:AP001509_233 sugar transport system (permease) (binding protein dependent transporter) from Bacillus halodurans (322 aa); 54.1% identity in 316 aa overlap. 6 transmembrane regions were found by PSORT.; permease; ABC transporter 2389683 990396 CPE2081 Clostridium perfringens str. 13 ABC transporter NP_562997.1 2388727 R 195102 CDS NP_562998.1 18311064 990397 complement(2389701..2390669) 1 NC_003366.1 similar to gpu:AP001509_232 sugar transport system (permease) (binding protein dependent transporter) from Bacillus halodurans (312 aa); 55.6% identity in 304 aa overlap. 4 transmembrane regions were found by PSORT.; permease; ABC transporter 2390669 990397 CPE2082 Clostridium perfringens str. 13 ABC transporter NP_562998.1 2389701 R 195102 CDS NP_562999.1 18311065 990398 complement(2390899..2391375) 1 NC_003366.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 2391375 moaC 990398 moaC Clostridium perfringens str. 13 molybdenum cofactor biosynthesis protein MoaC NP_562999.1 2390899 R 195102 CDS NP_563000.1 18311066 990399 complement(2391414..2392070) 1 NC_003366.1 similar to pir:S77084 ABC-type transport protein sll0739 from Synechocystis sp. (strain PCC 6803) (615 aa); 35.9% identity in 170 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; permease; molybdate ABC transporter permease 2392070 modB 990399 modB Clostridium perfringens str. 13 molybdate ABC transporter permease NP_563000.1 2391414 R 195102 CDS NP_563001.1 18311067 990400 complement(2392067..2392843) 1 NC_003366.1 similar to pir:A70040 molybdate-binding protein homolog yvg from Bacillus subtilis (260 aa); 44.3% identity in 246 aa overlap. N-terminal signal sequence was found by PSORT; binding protein; molybdenum ABC transporter 2392843 modA 990400 modA Clostridium perfringens str. 13 molybdenum ABC transporter NP_563001.1 2392067 R 195102 CDS NP_563002.1 18311068 990401 complement(2392828..2393319) 1 NC_003366.1 partially similar to sp:CNX1_ARATH MOLYBDOPTERIN BIOSYNTHESIS CNX1 PROTEIN (MOLYBDENUM COFACTOR BIOSYNTHESIS ENZYME CNX1) from Arabidopsis thaliana (670 aa); 49.4% identity in 158 aa overlap; molybdenum cofactor synthesis protein 2393319 moaB 990401 moaB Clostridium perfringens str. 13 molybdenum cofactor synthesis protein NP_563002.1 2392828 R 195102 CDS NP_563003.1 18311069 990402 complement(2393660..2395183) 1 NC_003366.1 similar to gpu:AP001509_231 two-component sensor response regulator from Bacillus halodurans (508 aa); 29.2% identity in 507 aa overlap; AraC family transcriptional regulator 2395183 990402 CPE2087 Clostridium perfringens str. 13 AraC family transcriptional regulator NP_563003.1 2393660 R 195102 CDS NP_563004.1 18311070 990403 complement(2395188..2396924) 1 NC_003366.1 similar to gpu:AP001509_230 two-component sensor histidine kinase from Bacillus halodurans (587 aa); 27.2% identity in 569 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; sensor histidine kinase 2396924 990403 CPE2088 Clostridium perfringens str. 13 sensor histidine kinase NP_563004.1 2395188 R 195102 CDS NP_563005.1 18311071 990404 2397146..2397823 1 NC_003366.1 similar to gpu:AP001508_211 BH0488 gene product from Bacillus halodurans (216 aa); 22.7% identity in 185 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 2397823 990404 CPE2089 Clostridium perfringens str. 13 hypothetical protein NP_563005.1 2397146 D 195102 CDS NP_563006.1 18311072 990405 2398089..2399426 1 NC_003366.1 similar to gp:AF106850_1 FmhB from Staphylococcus aureus (421 aa); 30.3% identity in 439 aa overlap; FemAB family protein 2399426 fmhB 990405 fmhB Clostridium perfringens str. 13 FemAB family protein NP_563006.1 2398089 D 195102 CDS NP_563007.1 18311073 990406 2399789..2400094 1 NC_003366.1 similar to gpu:AP001509_13 BH0575 gene product from Bacillus halodurans (102 aa); 55.4% identity in 101 aa overlap; PadR family transcriptional regulator 2400094 990406 CPE2091 Clostridium perfringens str. 13 PadR family transcriptional regulator NP_563007.1 2399789 D 195102 CDS NP_563008.1 18311074 990407 complement(2400141..2400878) 1 NC_003366.1 similar to sp:YXEO_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BINDING PROTEIN YXEO from Bacillus subtilis (249 aa); 61.4% identity in 241 aa overlap; ATP-binding protein; amino acid ABC transporter 2400878 990407 CPE2092 Clostridium perfringens str. 13 amino acid ABC transporter NP_563008.1 2400141 R 195102 CDS NP_563009.1 18311075 990408 complement(2400897..2402405) 1 NC_003366.1 similar to gp:D90907_46 glutamine-binding periplasmic protein from Synechocystis sp. (strain PCC 6803) (530 aa); 34.7% identity in 461 aa overlap. 3 transmembrane regions were found by PSORT.; permease; amino acid ABC transporter 2402405 990408 CPE2093 Clostridium perfringens str. 13 amino acid ABC transporter NP_563009.1 2400897 R 195102 CDS NP_563010.1 18311076 990409 2402578..2403357 1 NC_003366.1 partially similar to prf:2409329F hydrogenase from Methanosarcina barkeri (122 aa); 40.7% identity in 54 aa overlap; hypothetical protein 2403357 990409 CPE2094 Clostridium perfringens str. 13 hypothetical protein NP_563010.1 2402578 D 195102 CDS NP_563011.1 18311077 990410 complement(2403482..2403898) 1 NC_003366.1 similar to pir:A75034 hypothetical protein PAB1546 from Pyrococcus abyssi (strain Orsay) (156 aa); 26.9% identity in 119 aa overlap; hypothetical protein 2403898 990410 CPE2095 Clostridium perfringens str. 13 hypothetical protein NP_563011.1 2403482 R 195102 CDS NP_563012.1 18311078 990411 complement(2404405..2405226) 1 NC_003366.1 similar to gp:AB028738_8 hypothetical 25.9-kD protein from Clostridium perfringens (215 aa); 100% identity in 186 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2405226 990411 CPE2096 Clostridium perfringens str. 13 hypothetical protein NP_563012.1 2404405 R 195102 CDS NP_563013.1 18311079 990412 complement(2405245..2406501) 1 NC_003366.1 similar to gp:AB028738_6 hypothetical 48.7-kD protein from Clostridium perfringens (418 aa); 96.9% identity in 418 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2406501 990412 CPE2097 Clostridium perfringens str. 13 hypothetical protein NP_563013.1 2405245 R 195102 CDS NP_563014.1 18311080 990413 complement(2406617..2408065) 1 NC_003366.1 similar to gp:AB028738_5 Sensor histidine kinase VirJ from Clostridium perfringens (471 aa); 84.6% identity in 469 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; two-component sensor histidine kinase 2408065 virJ 990413 virJ Clostridium perfringens str. 13 two-component sensor histidine kinase NP_563014.1 2406617 R 195102 CDS NP_563015.1 18311081 990414 complement(2408055..2408753) 1 NC_003366.1 similar to gp:AB028738_4 Response regulator protein VirI from Clostridium perfringens (232 aa); 100% identity in 232 aa overlap; two-component response regulator 2408753 virI 990414 virI Clostridium perfringens str. 13 two-component response regulator NP_563015.1 2408055 R 195102 CDS NP_563016.1 18311082 990415 complement(2408956..2409351) 1 NC_003366.1 similar to gp:AB028738_3 hypothetical 15.2-kD protein from Clostridium perfringens (131 aa); 89.3% identity in 131 aa overlap; hypothetical protein 2409351 990415 CPE2100 Clostridium perfringens str. 13 hypothetical protein NP_563016.1 2408956 R 195102 CDS NP_563017.1 18311083 990416 complement(2409484..2409774) 1 NC_003366.1 similar to gp:AB028738_2 hypothetical 11.0-kD protein from Clostridium perfringens (96 aa); 100% identity in 96 aa overlap; hypothetical protein 2409774 990416 CPE2101 Clostridium perfringens str. 13 hypothetical protein NP_563017.1 2409484 R 195102 CDS NP_563018.1 18311084 990417 complement(2409786..2411543) 1 NC_003366.1 similar to gp:AB028738_1 probable ATP-dependent RNA helicase from Clostridium perfringens (585 aa); 98.1% identity in 585 aa overlap; helicase domain-containing protein 2411543 990417 CPE2102 Clostridium perfringens str. 13 helicase domain-containing protein NP_563018.1 2409786 R 195102 CDS NP_563019.1 18311085 990418 2411804..2412664 1 NC_003366.1 partially similar to gp:AE001768_5 ribosomal protein L11 methyltransferase, from Thermotoga maritima (264 aa); 34.5% identity in 177 aa overlap. 1 transmembrane region was found by PSORT; 50S ribosomal protein L11 methyltransferase 2412664 990418 CPE2103 Clostridium perfringens str. 13 50S ribosomal protein L11 methyltransferase NP_563019.1 2411804 D 195102 CDS NP_563020.1 18311086 990419 complement(2413069..2413584) 1 NC_003366.1 similar to pir:F72239 hypothetical protein from Thermotoga maritima (strain MSB8) (211 aa); 20.8% identity in 154 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 2413584 990419 CPE2104 Clostridium perfringens str. 13 hypothetical protein NP_563020.1 2413069 R 195102 CDS NP_563021.1 18311087 990420 complement(2413602..2413976) 1 NC_003366.1 similar to pir:E72239 hypothetical protein TM1554 from Thermotoga maritima (strain MSB8) (106 aa); 40% identity in 50 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2413976 990420 CPE2105 Clostridium perfringens str. 13 hypothetical protein NP_563021.1 2413602 R 195102 CDS NP_563022.1 18311088 990421 complement(2413977..2415008) 1 NC_003366.1 similar to sp:APBE_TREPA THIAMINE BIOSYNTHESIS LIPOPROTEIN APBE PRECURSOR from Treponema pallidum (362 aa); 33.6% identity in 286 aa overlap. N-terminal signal sequence was found by PSORT; thiamine biosynthesis lipoprotein 2415008 apbE 990421 apbE Clostridium perfringens str. 13 thiamine biosynthesis lipoprotein NP_563022.1 2413977 R 195102 CDS NP_563023.1 18311089 990422 complement(2415180..2418425) 1 NC_003366.1 partially similar to pir:T28317 ORF MSV156 hypothetical protein from Melanoplus sanguinipes entomopoxvirus (1127 aa); 21% identity in 675 aa overlap; hypothetical protein 2418425 990422 CPE2107 Clostridium perfringens str. 13 hypothetical protein NP_563023.1 2415180 R 195102 CDS NP_563024.1 18311090 990423 complement(2418438..2419484) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2419484 990423 CPE2108 Clostridium perfringens str. 13 hypothetical protein NP_563024.1 2418438 R 195102 CDS NP_563025.1 18311091 990424 complement(2419685..2420134) 1 NC_003366.1 similar to pir:D69439 conserved hypothetical protein AF1517 from Archaeoglobus fulgidus (162 aa); 27.8% identity in 97 aa overlap; hypothetical protein 2420134 990424 CPE2109 Clostridium perfringens str. 13 hypothetical protein NP_563025.1 2419685 R 195102 CDS NP_563026.1 18311092 990425 2420422..2421111 1 NC_003366.1 no significant homology 5 transmembrane regions were found by PSORT.; hypothetical protein 2421111 990425 CPE2110 Clostridium perfringens str. 13 hypothetical protein NP_563026.1 2420422 D 195102 CDS NP_563027.1 18311093 990426 2421136..2421843 1 NC_003366.1 partially similar to pir:C75537 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (406 aa); 22.6% identity in 137 aa overlap. ATT start. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 2421843 990426 CPE2111 Clostridium perfringens str. 13 hypothetical protein NP_563027.1 2421136 D 195102 CDS NP_563028.1 18311094 990427 complement(2421968..2423722) 1 NC_003366.1 partially similar to prf:2204349A ORF 1 from Clostridium perfringens (242 aa); 41.4% identity in 232 aa overlap. 2 transmembrane regions were found by PSORT.; subtilase 2423722 990427 CPE2112 Clostridium perfringens str. 13 subtilase NP_563028.1 2421968 R 195102 CDS NP_563029.1 18311095 990428 complement(2423724..2425544) 1 NC_003366.1 partially similar to prf:2204349A ORF 1 from Clostridium perfringens (242 aa); 40.6% identity in 229 aa overlap. ATA start. 1 transmembrane region was found by PSORT; hypothetical protein 2425544 990428 CPE2113 Clostridium perfringens str. 13 hypothetical protein NP_563029.1 2423724 R 195102 CDS NP_563030.1 18311096 990429 complement(2425791..2427146) 1 NC_003366.1 similar to gpu:AB023045_18 RNA methyltransferase-like protein from Arabidopsis thaliana (554 aa); 36.2% identity in 447 aa overlap; 23S rRNA (uracil-5-)-methyltransferase RumA 2427146 990429 CPE2114 Clostridium perfringens str. 13 23S rRNA (uracil-5-)-methyltransferase RumA NP_563030.1 2425791 R 195102 CDS NP_563031.1 18311097 990430 complement(2427174..2427623) 1 NC_003366.1 no significant homology 2 transmembrane regions were found by PSORT.; hypothetical protein 2427623 990430 CPE2115 Clostridium perfringens str. 13 hypothetical protein NP_563031.1 2427174 R 195102 CDS NP_563032.1 18311098 990431 complement(2427810..2429717) 1 NC_003366.1 similar to gp:EAC245960_3 elongation factor SelB from Eubacterium acidaminophilum (626 aa); 43.8% identity in 635 aa overlap. 1 transmembrane region was found by PSORT; selenocysteine-specific translation elongation factor 2429717 selB 990431 selB Clostridium perfringens str. 13 selenocysteine-specific translation elongation factor NP_563032.1 2427810 R 195102 CDS NP_563033.1 18311099 990432 complement(2429718..2431106) 1 NC_003366.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 2431106 selA 990432 selA Clostridium perfringens str. 13 selenocysteine synthase NP_563033.1 2429718 R 195102 CDS NP_563034.1 18311100 990433 complement(2431123..2431863) 1 NC_003366.1 similar to gp:EAC245960_1 selenophosphate synthetase from Eubacterium acidaminophilum (347 aa); 57.4% identity in 324 aa overlap. N-terminal signal sequence was found by PSORT; selenophosphate synthetase 2431863 selD 990433 selD Clostridium perfringens str. 13 selenophosphate synthetase NP_563034.1 2431123 R 195102 CDS NP_563035.1 18311101 990434 2431965..2432156 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2432156 990434 CPE2119 Clostridium perfringens str. 13 hypothetical protein NP_563035.1 2431965 D 195102 CDS NP_563036.1 18311102 990435 complement(2432199..2432981) 1 NC_003366.1 similar to sp:CME1_BACSU COME OPERON PROTEIN 1 from Bacillus subtili (205 aa); 39.9% identity in 148 aa overlap. N-terminal signal sequence was found by PSORT; competence protein ComE 2432981 comEA 990435 comEA Clostridium perfringens str. 13 competence protein ComE NP_563036.1 2432199 R 195102 CDS NP_563037.1 18311103 990436 2433177..2434511 1 NC_003366.1 similar to gp:CPDACF_1 dacF gene product from Clostridium perfringens (96 aa); 94.8% identity in 96 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; D-alanyl-D-alanine carboxypeptidase 2434511 dacF 990436 dacF Clostridium perfringens str. 13 D-alanyl-D-alanine carboxypeptidase NP_563037.1 2433177 D 195102 CDS NP_563038.1 18311104 990437 complement(2434543..2435439) 1 NC_003366.1 similar to sp:YJBO_BACSU HYPOTHETICAL 31.5 KDA PROTEIN IN MECA-TENA INTERGENIC REGION from Bacillus subtilis (283 aa); 39.8% identity in 269 aa overlap; hypothetical protein 2435439 990437 CPE2122 Clostridium perfringens str. 13 hypothetical protein NP_563038.1 2434543 R 195102 CDS NP_563039.1 18311105 990438 complement(2435436..2436749) 1 NC_003366.1 similar to pir:S75661 membrane-bound protein lytR from Synechocystis sp. (strain PCC 6803) (463 aa); 31% identity in 358 aa overlap. 1 transmembrane region was found by PSORT; membrane-bound protein; membrane-bound protein 2436749 990438 CPE2123 Clostridium perfringens str. 13 membrane-bound protein NP_563039.1 2435436 R 195102 CDS NP_563040.1 18311106 990439 complement(2436772..2437341) 1 NC_003366.1 similar to gpu:AP001511_216 BH1327 gene product from Bacillus halodurans (187 aa); 44.1% identity in 179 aa overlap; HD domain-containing protein 2437341 990439 CPE2124 Clostridium perfringens str. 13 HD domain-containing protein NP_563040.1 2436772 R 195102 CDS NP_563041.1 18311107 990440 complement(2437344..2437952) 1 NC_003366.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 2437952 nadD 990440 nadD Clostridium perfringens str. 13 nicotinic acid mononucleotide adenylyltransferase NP_563041.1 2437344 R 195102 CDS NP_563042.1 18311108 990441 complement(2437954..2438256) 1 NC_003366.1 similar to sp:YQEI_BACSU HYPOTHETICAL 10.8 KDA PROTEIN IN AROD-COMER INTERGENIC REGION from Bacillus subtilis (96 aa); 46.9% identity in 96 aa overlap; RNA-binding protein 2438256 990441 CPE2126 Clostridium perfringens str. 13 RNA-binding protein NP_563042.1 2437954 R 195102 CDS NP_563043.1 18311109 990442 complement(2438274..2439560) 1 NC_003366.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 2439560 obgE 990442 obgE Clostridium perfringens str. 13 GTPase ObgE NP_563043.1 2438274 R 195102 CDS NP_563044.1 18311110 990443 complement(2439728..2440030) 1 NC_003366.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 2440030 rpmA 990443 rpmA Clostridium perfringens str. 13 50S ribosomal protein L27 NP_563044.1 2439728 R 195102 CDS NP_563045.1 18311111 990444 complement(2440034..2440339) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2440339 990444 CPE2129 Clostridium perfringens str. 13 hypothetical protein NP_563045.1 2440034 R 195102 CDS NP_563046.1 18311112 990445 complement(2440415..2440726) 1 NC_003366.1 similar to pir:H81212 50S ribosomal protein L21 NMB0325 from Neisseria meningitidis (group B strain MD58, group A strain Z2491) (102 aa); 48.5% identity in 101 aa overlap; 50S ribosomal protein L21 2440726 rplU 990445 rplU Clostridium perfringens str. 13 50S ribosomal protein L21 NP_563046.1 2440415 R 195102 CDS NP_563047.1 18311113 990446 complement(2440852..2442294) 1 NC_003366.1 similar to sp:RNG_HAEIN RIBONUCLEASE G (EC 3.1.4.-) (RNASE G) (CYTOPLASMIC AXIAL FILAMENT PROTEIN) from Haemophilus influenzae (strain Rd KW20) (491 aa); 36.5% identity in 394 aa overlap; ribonuclease, Rne/Rng family 2442294 rng 990446 rng Clostridium perfringens str. 13 ribonuclease, Rne/Rng family NP_563047.1 2440852 R 195102 CDS NP_563048.1 18311114 990447 complement(2442311..2443018) 1 NC_003366.1 partially similar to gp:SCC88_11 hypothetical protein SCC88.11c from Streptomyces coelicolor A3(2) (258 aa); 28.3% identity in 159 aa overlap; hypothetical protein 2443018 990447 CPE2132 Clostridium perfringens str. 13 hypothetical protein NP_563048.1 2442311 R 195102 CDS NP_563049.1 18311115 990448 complement(2442996..2444849) 1 NC_003366.1 similar to pir:H72336 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (599 aa); 41.3% identity in 605 aa overlap; radical SAM domain-containing protein 2444849 990448 CPE2133 Clostridium perfringens str. 13 radical SAM domain-containing protein NP_563049.1 2442996 R 195102 CDS NP_563050.1 18311116 990449 complement(2444981..2445835) 1 NC_003366.1 similar to N-terminal of pir:A69209 conserved hypothetical protein MTH816 from Methanobacterium thermoautotrophicum (strain Delta H) (341 aa); 31.7% identity in 139 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; M50 family peptidase 2445835 990449 CPE2134 Clostridium perfringens str. 13 M50 family peptidase NP_563050.1 2444981 R 195102 CDS NP_563051.1 18311117 990450 complement(2445832..2446674) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2446674 990450 CPE2135 Clostridium perfringens str. 13 hypothetical protein NP_563051.1 2445832 R 195102 CDS NP_563052.1 18311118 990451 complement(2446824..2447948) 1 NC_003366.1 similar to gp:SCY14206_5 sfr gene product from Streptomyces coelicolor A3(2) (372 aa); 29.3% identity in 355 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; FtsW/RodA/SpoVE family cell cycle protein 2447948 spoVE 990451 spoVE Clostridium perfringens str. 13 FtsW/RodA/SpoVE family cell cycle protein NP_563052.1 2446824 R 195102 CDS NP_563053.1 18311119 990452 complement(2448096..2448368) 1 NC_003366.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 2448368 minE 990452 minE Clostridium perfringens str. 13 cell division topological specificity factor MinE NP_563053.1 2448096 R 195102 CDS NP_563054.1 18311120 990453 complement(2448379..2449176) 1 NC_003366.1 similar to gpu:AP001517_149 septum site-determining protein from Bacillus halodurans (264 aa); 55.4% identity in 240 aa overlap; septum site-determining protein MinD 2449176 minD 990453 minD Clostridium perfringens str. 13 septum site-determining protein MinD NP_563054.1 2448379 R 195102 CDS NP_563055.1 18311121 990454 complement(2449205..2449840) 1 NC_003366.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 2449840 minC 990454 minC Clostridium perfringens str. 13 septum formation inhibitor NP_563055.1 2449205 R 195102 CDS NP_563056.1 18311122 990455 complement(2450087..2453158) 1 NC_003366.1 partially similar to gp:AF147448_1 penicillin-binding protein 2 from Pseudomonas aeruginosa (646 aa); 29.4% identity in 333 aa overlap. N-terminal signal sequence was found by PSORT; penicillin-binding protein 2 2453158 990455 CPE2140 Clostridium perfringens str. 13 penicillin-binding protein 2 NP_563056.1 2450087 R 195102 CDS NP_563057.1 18311123 990456 complement(2453167..2453664) 1 NC_003366.1 no significant homology N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; rod shape-determining protein MreD 2453664 990456 CPE2141 Clostridium perfringens str. 13 rod shape-determining protein MreD NP_563057.1 2453167 R 195102 CDS NP_563058.1 18311124 990457 complement(2453680..2454531) 1 NC_003366.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 2454531 mreC 990457 mreC Clostridium perfringens str. 13 rod shape-determining protein MreC NP_563058.1 2453680 R 195102 CDS NP_563059.1 18311125 990458 complement(2454535..2455563) 1 NC_003366.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 2455563 mreB 990458 mreB Clostridium perfringens str. 13 rod shape-determining protein MreB NP_563059.1 2454535 R 195102 CDS NP_563060.1 18311126 990459 complement(2455583..2456266) 1 NC_003366.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 2456266 radC 990459 radC Clostridium perfringens str. 13 DNA repair protein RadC NP_563060.1 2455583 R 195102 CDS NP_563061.1 18311127 990460 complement(2456313..2456891) 1 NC_003366.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 2456891 maf 990460 maf Clostridium perfringens str. 13 Maf-like protein NP_563061.1 2456313 R 195102 CDS NP_563062.1 18311128 990461 complement(2457117..2457920) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2457920 990461 CPE2146 Clostridium perfringens str. 13 hypothetical protein NP_563062.1 2457117 R 195102 CDS NP_563063.1 18311129 990462 complement(2458182..2459000) 1 NC_003366.1 similar to gpu:AP001515_17 BH2283 gene product from Bacillus haloduran (290 aa); 29.3% identity in 249 aa overlap; hypothetical protein 2459000 990462 CPE2147 Clostridium perfringens str. 13 hypothetical protein NP_563063.1 2458182 R 195102 CDS NP_563064.1 18311130 990463 complement(2459328..2460779) 1 NC_003366.1 similar to gpu:AE004299_7 aminoacyl-histidine dipeptidase from Vibrio cholerae (534 aa); 39.5% identity in 476 aa overlap; aminoacyl-histidine dipeptidase 2460779 pepD 990463 pepD Clostridium perfringens str. 13 aminoacyl-histidine dipeptidase NP_563064.1 2459328 R 195102 CDS NP_563065.1 18311131 990464 2460912..2462336 1 NC_003366.1 similar to gpu:AP001517_285 pyruvate kinase (EC 2.7.1.40) from Bacillus halodurans (584 aa); 50% identity in 474 aa overlap; pyruvate kinase 2462336 pykA 990464 pykA Clostridium perfringens str. 13 pyruvate kinase NP_563065.1 2460912 D 195102 CDS NP_563066.1 18311132 990465 complement(2462453..2463589) 1 NC_003366.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2463589 rpsA 990465 rpsA Clostridium perfringens str. 13 30S ribosomal protein S1 NP_563066.1 2462453 R 195102 CDS NP_563067.1 18311133 990466 complement(2463735..2463938) 1 NC_003366.1 similar to pir:F70041 probable mercuric ion-binding protein yvgY from Bacillus subtilis (69 aa); 27.4% identity in 62 aa overlap; heavy metal binding protein 2463938 990466 CPE2151 Clostridium perfringens str. 13 heavy metal binding protein NP_563067.1 2463735 R 195102 CDS NP_563068.1 18311134 990467 complement(2464043..2464807) 1 NC_003366.1 similar to sp:YAAA_HAEIN HYPOTHETICAL PROTEIN HI0984 from Haemophilus influenzae (strain Rd KW20) (272 aa); 43.5% identity in 255 aa overlap; hypothetical protein 2464807 990467 CPE2152 Clostridium perfringens str. 13 hypothetical protein NP_563068.1 2464043 R 195102 CDS NP_563069.1 18311135 990468 complement(2464973..2465383) 1 NC_003366.1 similar to gpu:AP001516_139 inosine-5'-monophosphate dehydrogenase from Bacillus halodurans (144 aa); 64% identity in 136 aa overlap; inosine-5'-monophosphate dehydrogenase 2465383 guaB 990468 guaB Clostridium perfringens str. 13 inosine-5'-monophosphate dehydrogenase NP_563069.1 2464973 R 195102 CDS NP_563070.1 18311136 990469 complement(2465469..2466371) 1 NC_003366.1 partially similar to sp:DPO3_THEMA DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (EC 2.7.7.7) (POLIII) from Thermotoga maritima (strain MSB8 (1367 aa); 33.1% identity in 151 aa overlap; exonuclease 2466371 990469 CPE2154 Clostridium perfringens str. 13 exonuclease NP_563070.1 2465469 R 195102 CDS NP_563071.1 18311137 990470 complement(2466626..2468380) 1 NC_003366.1 similar to pir:A64696 hypothetical protein HP0426/HP1409 from Helicobacter pylori (strain 26695) (578 aa); 26% identity in 557 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 2468380 990470 CPE2155 Clostridium perfringens str. 13 hypothetical protein NP_563071.1 2466626 R 195102 CDS NP_563072.1 18311138 990471 complement(2468553..2470340) 1 NC_003366.1 partially similar to sp:MUTS_AQUPY DNA MISMATCH REPAIR PROTEIN MUTS from Aquifex pyrophilus (855 aa); 28.3% identity in 258 aa overlap. 3 transmembrane regions were found by PSORT.; MutS domain-containing protein 2470340 990471 CPE2156 Clostridium perfringens str. 13 MutS domain-containing protein NP_563072.1 2468553 R 195102 CDS NP_563073.1 18311139 990472 complement(2470664..2472193) 1 NC_003366.1 similar to gpu:AP001510_19 PTS system, glucose-specific enzyme II, A component from Bacillus halodurans (675 aa); 57.3% identity in 504 aa overlap. N-terminal signal sequence and 7 transmembrane regions were found by PSORT.; glucose-specific enzyme IIA component; PTS system glucose-specific transporter subunit IIBC 2472193 990472 CPE2157 Clostridium perfringens str. 13 PTS system glucose-specific transporter subunit IIBC NP_563073.1 2470664 R 195102 CDS NP_563074.1 18311140 990473 complement(2472360..2473256) 1 NC_003366.1 similar to pir:A69756 adhesion protein homolog ycdH from Bacillus subtilis (319 aa); 33% identity in 315 aa overlap. N-terminal signal sequence was found by PSORT; ABC transporter substrate-binding protein 2473256 990473 CPE2158 Clostridium perfringens str. 13 ABC transporter substrate-binding protein NP_563074.1 2472360 R 195102 CDS NP_563075.1 18311141 990474 complement(2473482..2476250) 1 NC_003366.1 similar to pir:A64465 hypothetical protein MJ1322 from Methanococcus jannaschii (1005 aa); 28.1% identity in 431 aa overlap. 2 transmembrane regions were found by PSORT.; hypothetical protein 2476250 990474 CPE2159 Clostridium perfringens str. 13 hypothetical protein NP_563075.1 2473482 R 195102 CDS NP_563076.1 18311142 990475 complement(2476240..2477382) 1 NC_003366.1 similar to pir:A69819 probable phosphoesterase (EC 3.1.-.-) yhaO from Bacillus subtilis (408 aa); 28% identity in 296 aa overlap. 1 transmembrane region was found by PSORT; phosphoesterase 2477382 990475 CPE2160 Clostridium perfringens str. 13 phosphoesterase NP_563076.1 2476240 R 195102 CDS NP_563077.1 18311143 990476 complement(2477660..2477842) 1 NC_003366.1 similar to pir:A54537 small acid-soluble spore ssp1 from Clostridium perfringens (60 aa); 100% identity in 60 aa overlap; small acid-soluble protein Ssp1 2477842 990476 CPE2161 Clostridium perfringens str. 13 small acid-soluble protein Ssp1 NP_563077.1 2477660 R 195102 CDS NP_563078.1 18311144 990477 complement(2477982..2480159) 1 NC_003366.1 similar to gpu:AE004311_7 2`,3`-cyclic-nucleotide 2`-phosphodiesterase, from Vibrio cholerae (634 aa); 52.5% identity in 598 aa overlap. N-terminal signal sequence was found by PSORT; 2`,3`-cyclic-nucleotide 2`-phosphodiesterase 2480159 cpdC 990477 cpdC Clostridium perfringens str. 13 2`,3`-cyclic-nucleotide 2`-phosphodiesterase NP_563078.1 2477982 R 195102 CDS NP_563079.1 18311145 990480 complement(2480759..2481379) 1 NC_003366.1 similar to pir:H72290 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (215 aa); 31.2% identity in 205 aa overlap; hypothetical protein 2481379 990480 CPE2163 Clostridium perfringens str. 13 hypothetical protein NP_563079.1 2480759 R 195102 CDS NP_563080.1 18311146 990481 2481679..2482143 1 NC_003366.1 similar to sp:YDIB_BACSU HYPOTHETICAL 17.9 KDA PROTEIN IN PHOB-GROES INTERGENIC REGION from Bacillus subtilis (158 aa); 46.5% identity in 142 aa overlap; hypothetical protein 2482143 990481 CPE2164 Clostridium perfringens str. 13 hypothetical protein NP_563080.1 2481679 D 195102 CDS NP_563081.1 18311147 990482 2482137..2482841 1 NC_003366.1 similar to pir:D69786 glycoprotein endopeptidase homolog ydi from Bacillus subtilis (229 aa); 33.6% identity in 232 aa overlap; glycoprotease 2482841 990482 CPE2165 Clostridium perfringens str. 13 glycoprotease NP_563081.1 2482137 D 195102 CDS NP_563082.1 18311148 990483 2482841..2483287 1 NC_003366.1 similar to pir:E69786 ribosomal-protein-alanine N-acetyltransfer homolog ydiD from Bacillus subtilis (151 aa); 44.9% identity in 136 aa overlap; ribosomal-protein-alanine acetyltransferase 2483287 990483 CPE2166 Clostridium perfringens str. 13 ribosomal-protein-alanine acetyltransferase NP_563082.1 2482841 D 195102 CDS NP_563083.1 18311149 990484 complement(2483381..2483977) 1 NC_003366.1 similar to sp:YPAA_BACSU HYPOTHETICAL 20.5 KDA PROTEIN IN SERA-FER INTERGENIC REGION from Bacillus subtilis (190 aa); 35.7% identity in 171 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 2483977 990484 CPE2167 Clostridium perfringens str. 13 hypothetical protein NP_563083.1 2483381 R 195102 CDS NP_563084.1 18311150 990485 complement(2484325..2486487) 1 NC_003366.1 similar to gpu:AP001508_254 BH0531 gene product from Bacillus halodurans (728 aa); 53.3% identity in 709 aa overlap; hypothetical protein 2486487 990485 CPE2168 Clostridium perfringens str. 13 hypothetical protein NP_563084.1 2484325 R 195102 CDS NP_563085.1 18311151 990486 2486599..2487942 1 NC_003366.1 partially similar to gpu:AE003921_10 hypothetical protein from Xylella fastidiosa (529 aa); 29.5% identity in 207 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; peptidase 2487942 990486 CPE2169 Clostridium perfringens str. 13 peptidase NP_563085.1 2486599 D 195102 CDS NP_563086.1 18311152 990487 complement(2488191..2489162) 1 NC_003366.1 catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA; peptide chain release factor 2 2489162 prfB 990487 prfB Clostridium perfringens str. 13 peptide chain release factor 2 NP_563086.1 2488191 R 195102 CDS NP_563087.1 18311153 990488 complement(2489545..2492067) 1 NC_003366.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 2492067 secA 990488 secA Clostridium perfringens str. 13 preprotein translocase subunit SecA NP_563087.1 2489545 R 195102 CDS NP_563088.1 18311154 990489 complement(2492302..2492841) 1 NC_003366.1 similar to gpu:AP001519_123 ribosomal protein S30AE family from Bacillus haloduran (187 aa); 48.9% identity in 174 aa overlap; 30S ribosomal protein S30 2492841 990489 CPE2172 Clostridium perfringens str. 13 30S ribosomal protein S30 NP_563088.1 2492302 R 195102 CDS NP_563089.1 18311155 990490 complement(2493292..2493951) 1 NC_003366.1 similar to gp:AE001803_4 comFC protein, from Thermotoga maritima (202 aa); 27.7% identity in 184 aa overlap; late competence protein; comFC protein 2493951 comFC 990490 comFC Clostridium perfringens str. 13 comFC protein NP_563089.1 2493292 R 195102 CDS NP_563090.1 18311156 990491 complement(2493927..2494889) 1 NC_003366.1 no significant homology; hypothetical protein 2494889 990491 CPE2174 Clostridium perfringens str. 13 hypothetical protein NP_563090.1 2493927 R 195102 CDS NP_563091.1 18311157 990492 complement(2494907..2497141) 1 NC_003366.1 similar to gp:SCC57A_8 deoxyribonuclease from Streptomyces coelicolor A3(2) (753 aa); 37.7% identity in 732 aa overlap; RecD/TraA family helicase 2497141 recD 990492 recD Clostridium perfringens str. 13 RecD/TraA family helicase NP_563091.1 2494907 R 195102 CDS NP_563092.1 18311158 990493 2497278..2498414 1 NC_003366.1 similar to gpu:AP001508_144 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Bacillus halodurans (397 aa); 40.7% identity in 376 aa overlap. 1 transmembrane region was found by PSORT; N-acetylglucosamine-6-phosphate deacetylase 2498414 nagA 990493 nagA Clostridium perfringens str. 13 N-acetylglucosamine-6-phosphate deacetylase NP_563092.1 2497278 D 195102 CDS NP_563093.2 161485642 990494 complement(2498554..2499729) 1 NC_003366.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 2499729 metK 990494 metK Clostridium perfringens str. 13 S-adenosylmethionine synthetase NP_563093.2 2498554 R 195102 CDS NP_563094.1 18311160 990502 complement(2500946..2501590) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2501590 990502 CPE2178 Clostridium perfringens str. 13 hypothetical protein NP_563094.1 2500946 R 195102 CDS NP_563095.1 18311161 990503 2501696..2502226 1 NC_003366.1 similar to sp:YYAC_BACSU HYPOTHETICAL 22.5 KDA PROTEIN IN RPSF-SPO0J INTERGENIC REGION from Bacillus subtilis (205 aa); 38.9% identity in 149 aa overlap; sporulation protein YyaC 2502226 990503 CPE2179 Clostridium perfringens str. 13 sporulation protein YyaC NP_563095.1 2501696 D 195102 CDS NP_563096.1 18311162 990504 complement(2502265..2503302) 1 NC_003366.1 similar to sp:MBL_BACCE MREB-LIKE PROTEIN (MBL PROTEIN) from Bacillus cereus (333 aa); 52.9% identity in 323 aa overlap. 1 transmembrane region was found by PSORT; MreB-like protein; rod shape-determining protein Mbl 2503302 mreV 990504 mreV Clostridium perfringens str. 13 rod shape-determining protein Mbl NP_563096.1 2502265 R 195102 CDS NP_563097.1 18311163 990505 complement(2503393..2503644) 1 NC_003366.1 similar to sp:SP3D_BACSU STAGE III SPORULATION PROTEIN D (14 KDA TRANSCRIPTION FACTOR) from Bacillus subtilis (93 aa); 61.3% identity in 80 aa overlap; stage III sporulation protein D 2503644 spoIIID 990505 spoIIID Clostridium perfringens str. 13 stage III sporulation protein D NP_563097.1 2503393 R 195102 CDS NP_563098.1 18311164 990506 complement(2503719..2504489) 1 NC_003366.1 similar to C-terminal region of gpu:AF157831_2 43 kDa antigen from Bartonella bacilliformis (401 aa); 31.2% identity in 157 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2504489 990506 CPE2182 Clostridium perfringens str. 13 hypothetical protein NP_563098.1 2503719 R 195102 CDS NP_563099.1 18311165 990507 complement(2504606..2505628) 1 NC_003366.1 similar to pir:S27530 sporulation protein from Clostridium acetobutylicum (362 aa); 47.4% identity in 272 aa overlap. N-terminal signal sequence was found by PSORT; stage II sporulation protein D 2505628 spoIID 990507 spoIID Clostridium perfringens str. 13 stage II sporulation protein D NP_563099.1 2504606 R 195102 CDS NP_563100.1 18311166 990508 complement(2505740..2507005) 1 NC_003366.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2507005 murA 990508 murA Clostridium perfringens str. 13 UDP-N-acetylglucosamine 1-carboxyvinyltransferase NP_563100.1 2505740 R 195102 CDS NP_563101.1 18311167 990509 complement(2507028..2507672) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2507672 990509 CPE2185 Clostridium perfringens str. 13 hypothetical protein NP_563101.1 2507028 R 195102 CDS NP_563102.1 18311168 990510 complement(2507854..2508255) 1 NC_003366.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit epsilon 2508255 atpC 990510 atpC Clostridium perfringens str. 13 ATP synthase F0F1 subunit epsilon NP_563102.1 2507854 R 195102 CDS NP_563103.1 18311169 990511 complement(2508271..2509668) 1 NC_003366.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 2509668 atpB 990511 atpB Clostridium perfringens str. 13 ATP synthase F0F1 subunit beta NP_563103.1 2508271 R 195102 CDS NP_563104.1 18311170 990512 complement(2509682..2510533) 1 NC_003366.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 2510533 atpG 990512 atpG Clostridium perfringens str. 13 ATP synthase F0F1 subunit gamma NP_563104.1 2509682 R 195102 CDS NP_563105.1 18311171 990513 complement(2510598..2512106) 1 NC_003366.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 2512106 atpA 990513 atpA Clostridium perfringens str. 13 ATP synthase F0F1 subunit alpha NP_563105.1 2510598 R 195102 CDS NP_563106.1 18311172 990514 complement(2512117..2512656) 1 NC_003366.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 2512656 atpD 990514 atpD Clostridium perfringens str. 13 ATP synthase F0F1 subunit delta NP_563106.1 2512117 R 195102 CDS NP_563107.1 18311173 990515 complement(2512659..2513138) 1 NC_003366.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel; ATP synthase F0F1 subunit B 2513138 atpF 990515 atpF Clostridium perfringens str. 13 ATP synthase F0F1 subunit B NP_563107.1 2512659 R 195102 CDS NP_563108.1 18311174 990516 complement(2513238..2513456) 1 NC_003366.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 2513456 atpL 990516 atpL Clostridium perfringens str. 13 ATP synthase F0F1 subunit C NP_563108.1 2513238 R 195102 CDS NP_563109.1 18311175 990517 complement(2513517..2514191) 1 NC_003366.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 2514191 atpI 990517 atpI Clostridium perfringens str. 13 ATP synthase F0F1 subunit A NP_563109.1 2513517 R 195102 CDS NP_563110.1 18311176 990518 complement(2514247..2514612) 1 NC_003366.1 no significant homology N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 2514612 990518 CPE2194 Clostridium perfringens str. 13 hypothetical protein NP_563110.1 2514247 R 195102 CDS NP_563111.1 18311177 990519 complement(2515294..2516472) 1 NC_003366.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 2516472 atoB 990519 atoB Clostridium perfringens str. 13 acetyl-CoA acetyltransferase NP_563111.1 2515294 R 195102 CDS NP_563112.1 18311178 990520 complement(2516741..2517895) 1 NC_003366.1 similar to pir:A72304 UDP-N-acetylglucosamine 2-epimerase from Thermotoga maritima (strain MSB8) (378 aa); 58.5% identity in 378 aa overlap; UDP-N-acetylglucosamine 2-epimerase 2517895 990520 CPE2196 Clostridium perfringens str. 13 UDP-N-acetylglucosamine 2-epimerase NP_563112.1 2516741 R 195102 CDS NP_563113.1 18311179 990521 complement(2517959..2518588) 1 NC_003366.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2518588 upp 990521 upp Clostridium perfringens str. 13 uracil phosphoribosyltransferase NP_563113.1 2517959 R 195102 CDS NP_563114.1 18311180 990522 complement(2518633..2519082) 1 NC_003366.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 2519082 990522 CPE2198 Clostridium perfringens str. 13 ribose-5-phosphate isomerase B NP_563114.1 2518633 R 195102 CDS NP_563115.1 18311181 990523 complement(2519162..2519317) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2519317 990523 CPE2199 Clostridium perfringens str. 13 hypothetical protein NP_563115.1 2519162 R 195102 CDS NP_563116.1 18311182 990524 complement(2519346..2520398) 1 NC_003366.1 similar to pir:D71154 hypothetical protein PH0435 from Pyrococcus horikoshii (340 aa); 49.4% identity in 330 aa overlap; Sua5/YciO/YrdC/YwlC family protein 2520398 990524 CPE2200 Clostridium perfringens str. 13 Sua5/YciO/YrdC/YwlC family protein NP_563116.1 2519346 R 195102 CDS NP_563117.1 18311183 990525 complement(2520421..2521011) 1 NC_003366.1 no significant homology N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 2521011 990525 CPE2201 Clostridium perfringens str. 13 hypothetical protein NP_563117.1 2520421 R 195102 CDS NP_563118.1 18311184 990526 complement(2521090..2522172) 1 NC_003366.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 2522172 prfA 990526 prfA Clostridium perfringens str. 13 peptide chain release factor 1 NP_563118.1 2521090 R 195102 CDS NP_563119.1 18311185 990527 complement(2522229..2523938) 1 NC_003366.1 N-terminal region is similar to pir:A72239 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (296 aa); 39.9% identity in 293 aa overlap. ATC start. 4 transmembrane regions were found by PSORT.; hypothetical protein 2523938 990527 CPE2203 Clostridium perfringens str. 13 hypothetical protein NP_563119.1 2522229 R 195102 CDS NP_563120.1 18311186 990528 complement(2524022..2524621) 1 NC_003366.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 2524621 tdk 990528 tdk Clostridium perfringens str. 13 thymidine kinase NP_563120.1 2524022 R 195102 CDS NP_563121.1 18311187 990529 2524777..2524983 1 NC_003366.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 2524983 rpmE 990529 rpmE Clostridium perfringens str. 13 50S ribosomal protein L31 NP_563121.1 2524777 D 195102 CDS NP_563122.1 18311188 990530 2525092..2526216 1 NC_003366.1 similar to sp:YPFP_BACSU HYPOTHETICAL 43.6 KDA PROTEIN IN CPSD-METB INTERGENIC REGION from Bacillus subtilis (382 aa); 29.1% identity in 333 aa overlap; monogalactosyldiacylglycerol synthase 2526216 990530 CPE2206 Clostridium perfringens str. 13 monogalactosyldiacylglycerol synthase NP_563122.1 2525092 D 195102 CDS NP_563123.1 18311189 990531 complement(2526259..2527698) 1 NC_003366.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 2527698 rho 990531 rho Clostridium perfringens str. 13 transcription termination factor Rho NP_563123.1 2526259 R 195102 CDS NP_563124.1 18311190 990532 complement(2527964..2529571) 1 NC_003366.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 2529571 pyrG 990532 pyrG Clostridium perfringens str. 13 CTP synthetase NP_563124.1 2527964 R 195102 CDS NP_563125.1 18311191 990533 complement(2529911..2530330) 1 NC_003366.1 similar to pir:C70059 hypothetical protein ywiB from Bacillus subtilis (142 aa); 31.9% identity in 113 aa overlap; hypothetical protein 2530330 990533 CPE2209 Clostridium perfringens str. 13 hypothetical protein NP_563125.1 2529911 R 195102 CDS NP_563126.1 18311192 990534 complement(2530353..2531333) 1 NC_003366.1 similar to pir:G81259 hypothetical protein Cj1633 from Campylobacter jejuni (strain NCTC 11168) (327 aa); 41.5% identity in 299 aa overlap; hypothetical protein 2531333 990534 CPE2210 Clostridium perfringens str. 13 hypothetical protein NP_563126.1 2530353 R 195102 CDS NP_563127.1 18311193 990535 complement(2531379..2532008) 1 NC_003366.1 similar to sp:SP2R_BACSU STAGE II SPORULATION PROTEIN R from Bacillus subtilis (224 aa); 37.7% identity in 167 aa overlap. N-terminal signal sequence was found by PSORT; stage II sporulation protein R 2532008 spoIIR 990535 spoIIR Clostridium perfringens str. 13 stage II sporulation protein R NP_563127.1 2531379 R 195102 CDS NP_563128.1 18311194 990536 complement(2532078..2532944) 1 NC_003366.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2532944 ipk 990536 ipk Clostridium perfringens str. 13 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase NP_563128.1 2532078 R 195102 CDS NP_563129.1 18311195 990537 complement(2533080..2535704) 1 NC_003366.1 catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 2535704 cphA 990537 cphA Clostridium perfringens str. 13 cyanophycin synthetase NP_563129.1 2533080 R 195102 CDS NP_563130.1 18311196 990538 complement(2535691..2536518) 1 NC_003366.1 similar to sp:CPHB_SYNY8 CYANOPHYCINASE (EC 3.-.-.-) from Synechocystis PCC6308 (272 aa); 40.2% identity in 264 aa overlap; cyanophycinase 2536518 cphB 990538 cphB Clostridium perfringens str. 13 cyanophycinase NP_563130.1 2535691 R 195102 CDS NP_563131.1 18311197 990539 complement(2536618..2538180) 1 NC_003366.1 no significant homology; lysM domain-containing protein 2538180 990539 CPE2215 Clostridium perfringens str. 13 lysM domain-containing protein NP_563131.1 2536618 R 195102 CDS NP_563132.1 18311198 990540 complement(2538540..2538776) 1 NC_003366.1 similar to sp:VEG_BACSU VEG PROTEIN from Bacillus subtilis (86 aa); 45.2% identity in 73 aa overlap; hypothetical protein 2538776 990540 CPE2216 Clostridium perfringens str. 13 hypothetical protein NP_563132.1 2538540 R 195102 CDS NP_563133.1 18311199 990541 complement(2538939..2539826) 1 NC_003366.1 similar to sp:YABG_BACSU HYPOTHETICAL 33.3 KDA PROTEIN IN KSGA-VEG INTERGENIC REGION from Bacillus subtilis (290 aa); 41.3% identity in 288 aa overlap; peptidase 2539826 990541 CPE2217 Clostridium perfringens str. 13 peptidase NP_563133.1 2538939 R 195102 CDS NP_563134.1 18311200 990542 complement(2540029..2541033) 1 NC_003366.1 similar to pir:F69987 spore coat protein homolog ytaA from Bacillus subtilis (357 aa); 24.3% identity in 284 aa overlap; spore coat protein CotS 2541033 cotS 990542 cotS Clostridium perfringens str. 13 spore coat protein CotS NP_563134.1 2540029 R 195102 CDS NP_563135.1 18311201 990543 2541142..2542269 1 NC_003366.1 similar to gp:AF189151_7 WbdB from Klebsiella pneumoniae (381 aa); 30.8% identity in 357 aa overlap; mannosyltransferase 2542269 990543 CPE2219 Clostridium perfringens str. 13 mannosyltransferase NP_563135.1 2541142 D 195102 CDS NP_563136.1 18311202 990544 complement(2542452..2543480) 1 NC_003366.1 similar to pir:F69987 spore coat protein homolog ytaA from Bacillus subtilis (357 aa); 24.2% identity in 318 aa overlap; spore coat protein 2543480 cotS 990544 cotS Clostridium perfringens str. 13 spore coat protein NP_563136.1 2542452 R 195102 CDS NP_563137.1 18311203 990545 complement(2543496..2544179) 1 NC_003366.1 no significant homology; hypothetical protein 2544179 990545 CPE2221 Clostridium perfringens str. 13 hypothetical protein NP_563137.1 2543496 R 195102 CDS NP_563138.1 18311204 990546 complement(2544187..2545194) 1 NC_003366.1 similar to pir:F69987 spore coat protein homolog ytaA from Bacillus subtilis (357 aa); 21.7% identity in 281 aa overlap; spore coat protein 2545194 cotS 990546 cotS Clostridium perfringens str. 13 spore coat protein NP_563138.1 2544187 R 195102 CDS NP_563139.1 18311205 990547 2545323..2546468 1 NC_003366.1 similar to gp:AF189151_7 WbdB from Klebsiella pneumoniae (381 aa); 35.3% identity in 266 aa overlap; mannosyltransferase 2546468 990547 CPE2223 Clostridium perfringens str. 13 mannosyltransferase NP_563139.1 2545323 D 195102 CDS NP_563140.1 18311206 990548 complement(2546702..2547232) 1 NC_003366.1 similar to N-terminal of pir:C71336 hypothetical protein TP034 from Treponema pallidum (469 aa); 25.5% identity in 153 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 2547232 990548 CPE2224 Clostridium perfringens str. 13 hypothetical protein NP_563140.1 2546702 R 195102 CDS NP_563141.1 18311207 990549 complement(2547425..2547796) 1 NC_003366.1 partially similar to pir:C71252 hypothetical protein TP1032 from syphilis spirochete (144 aa); 31.3% identity in 64 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2547796 990549 CPE2225 Clostridium perfringens str. 13 hypothetical protein NP_563141.1 2547425 R 195102 CDS NP_563142.1 18311208 990550 2547937..2548380 1 NC_003366.1 similar to sp:TA15_TREPA 15 KDA LIPOPROTEIN PRECURSOR (MAJOR MEMBRANE IMMUNOGEN) from Treponema pallidum (141 aa); 33.1% identity in 145 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2548380 990550 CPE2226 Clostridium perfringens str. 13 hypothetical protein NP_563142.1 2547937 D 195102 CDS NP_563143.1 18311209 990551 2548415..2549443 1 NC_003366.1 similar to sp:APBE_TREPA THIAMINE BIOSYNTHESIS LIPOPROTEIN APBE PRECURSOR from Treponema pallidum (362 aa); 32.8% identity in 332 aa overlap; thiamin biosynthesis lipoprotein 2549443 apbA 990551 apbA Clostridium perfringens str. 13 thiamin biosynthesis lipoprotein NP_563143.1 2548415 D 195102 CDS NP_563144.1 18311210 990552 complement(2549567..2550691) 1 NC_003366.1 similar to sp:YXER_BACSU HYPOTHETICAL 38.4 KDA PROTEIN IN IDH-DEOR INTERGENIC REGION from Bacillus subtilis (370 aa); 32.1% identity in 330 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; ethanolamine transporter 2550691 eutH 990552 eutH Clostridium perfringens str. 13 ethanolamine transporter NP_563144.1 2549567 R 195102 CDS NP_563145.1 18311211 990553 complement(2550854..2551183) 1 NC_003366.1 similar to gpu:AP001510_84 PTS system, cellobiose-specific enzyme II, B component (EIIA-cell) from Bacillus halodurans (98 aa); 49% identity in 96 aa overlap. N-terminal signal sequence was found by PSORT; cellobiose-specific enzyme IIB component; PTS system protein 2551183 990553 CPE2229 Clostridium perfringens str. 13 PTS system protein NP_563145.1 2550854 R 195102 CDS NP_563146.1 18311212 990554 complement(2551428..2552807) 1 NC_003366.1 similar to pir:A69643 serine proteinase Do, heat-shock protein htrA from Bacillus subtilis (449 aa); 45.2% identity in 321 aa overlap. 1 transmembrane region was found by PSORT; heat-shock protein HtrA; serine protease 2552807 990554 CPE2230 Clostridium perfringens str. 13 serine protease NP_563146.1 2551428 R 195102 CDS NP_563147.1 18311213 990555 complement(2552924..2553943) 1 NC_003366.1 similar to pir:D69747 hypothetical protein ybdG from Bacillus subtilis (296 aa); 23.3% identity in 288 aa overlap. 1 transmembrane region was found by PSORT; alpha/beta fold family hydrolase 2553943 990555 CPE2231 Clostridium perfringens str. 13 alpha/beta fold family hydrolase NP_563147.1 2552924 R 195102 CDS NP_563148.1 18311214 990556 complement(2553958..2554977) 1 NC_003366.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 2554977 990556 CPE2232 Clostridium perfringens str. 13 DNA-binding/iron metalloprotein/AP endonuclease NP_563148.1 2553958 R 195102 CDS NP_563149.1 18311215 990557 2555119..2555751 1 NC_003366.1 no significant homology; hypothetical protein 2555751 990557 CPE2233 Clostridium perfringens str. 13 hypothetical protein NP_563149.1 2555119 D 195102 CDS NP_563150.1 18311216 990558 2555760..2556320 1 NC_003366.1 partially similar to sp:TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR (EC 3.1.2.-) (PROTEASE I) (LYSOPHOSPHOLIPASE L1) (EC 3.1.1.5) (LECITHINASE B) from Escherichia col (208 aa); 26.3% identity in 99 aa overlap; acyl-CoA thioesterase 2556320 990558 CPE2234 Clostridium perfringens str. 13 acyl-CoA thioesterase NP_563150.1 2555760 D 195102 CDS NP_563151.1 18311217 990559 complement(2556457..2557419) 1 NC_003366.1 similar to pir:C75218 probable monooxygenase PAB0184 from Pyrococcus abyssi (strain Orsay) (407 aa); 36.4% identity in 313 aa overlap. N-terminal signal sequence was found by PSORT; oxidoreductase, pyridine nucleotide-disulfide family 2557419 990559 CPE2235 Clostridium perfringens str. 13 oxidoreductase, pyridine nucleotide-disulfide family NP_563151.1 2556457 R 195102 CDS NP_563152.1 18311218 990560 complement(2557451..2558023) 1 NC_003366.1 similar to pir:E81297 hypothetical protein Cj1505c from Campylobacter jejuni (strain NCTC 11168) (190 aa); 29.8% identity in 188 aa overlap; hypothetical protein 2558023 990560 CPE2236 Clostridium perfringens str. 13 hypothetical protein NP_563152.1 2557451 R 195102 CDS NP_563153.1 18311219 990561 2558205..2560094 1 NC_003366.1 similar to pir:D69815 conserved hypothetical protein yfnI from Bacillus subtilis (653 aa); 32.8% identity in 567 aa overlap. 5 transmembrane regions were found by PSORT.; hypothetical protein 2560094 990561 CPE2237 Clostridium perfringens str. 13 hypothetical protein NP_563153.1 2558205 D 195102 CDS NP_563154.1 18311220 990562 complement(2560233..2561756) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; lipoprotein 2561756 990562 CPE2238 Clostridium perfringens str. 13 lipoprotein NP_563154.1 2560233 R 195102 CDS NP_563155.1 18311221 990563 complement(2561773..2563188) 1 NC_003366.1 similar to pir:H69762 two-component sensor histidine kinase homolog yclK from Bacillus subtilis (473 aa); 30.3% identity in 435 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; two-component sensor histidine kinase 2563188 990563 CPE2239 Clostridium perfringens str. 13 two-component sensor histidine kinase NP_563155.1 2561773 R 195102 CDS NP_563156.1 18311222 990564 complement(2563369..2563836) 1 NC_003366.1 similar to prf:2222216A drrA gene from Thermotoga maritima (239 aa); 45.5% identity in 178 aa overlap; two-component response regulator 2563836 990564 CPE2240 Clostridium perfringens str. 13 two-component response regulator NP_563156.1 2563369 R 195102 CDS NP_563157.1 18311223 990565 complement(2563901..2564053) 1 NC_003366.1 no significant homology; hypothetical protein 2564053 990565 CPE2241 Clostridium perfringens str. 13 hypothetical protein NP_563157.1 2563901 R 195102 CDS NP_563158.1 18311224 990571 complement(2569898..2570698) 1 NC_003366.1 similar to gpu:AP001511_262 BH1373 gene product from Bacillus halodurans (270 aa); 44.5% identity in 256 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 2570698 990571 CPE2242 Clostridium perfringens str. 13 hypothetical protein NP_563158.1 2569898 R 195102 CDS NP_563159.1 18311225 990572 complement(2570886..2571689) 1 NC_003366.1 similar to prf:2202211A Met(S-adenosyl)-dependent methyltransferase from Escherichia coli (261 aa); 25.3% identity in 233 aa overlap. 1 transmembrane region was found by PSORT; S-adenosylmethionine-dependent methltransferase 2571689 smtA 990572 smtA Clostridium perfringens str. 13 S-adenosylmethionine-dependent methltransferase NP_563159.1 2570886 R 195102 CDS NP_563160.1 18311226 990573 2571905..2572660 1 NC_003366.1 similar to sp:LSPA_STACA LIPOPROTEIN SIGNAL PEPTIDASE (EC 3.4.23.36) (PROLIPOPROTEIN SIGNAL PEPTIDASE) (SIGNAL PEPTIDASE II) (SPASE II) from Staphylococcus carnosus (159 aa); 23.4% identity in 145 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 2572660 990573 CPE2244 Clostridium perfringens str. 13 hypothetical protein NP_563160.1 2571905 D 195102 CDS NP_563161.1 18311227 990574 2572779..2573081 1 NC_003366.1 no significant homology; hypothetical protein 2573081 990574 CPE2245 Clostridium perfringens str. 13 hypothetical protein NP_563161.1 2572779 D 195102 CDS NP_563162.1 18311228 990575 complement(2573156..2573617) 1 NC_003366.1 partially similar to pir:G71006 probable thiamin-binding periplasmic protein precursor from Pyrococcus horikoshii (347 aa); 30.1% identity in 103 aa overlap; hypothetical protein 2573617 990575 CPE2246 Clostridium perfringens str. 13 hypothetical protein NP_563162.1 2573156 R 195102 CDS NP_563163.1 18311229 990576 complement(2573650..2574219) 1 NC_003366.1 similar to gp:AP001508_236 iron (III) transport system (iron (III)-binding protein) from Bacillus halodurans (372 aa); 24.4% identity in 164 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2574219 990576 CPE2247 Clostridium perfringens str. 13 hypothetical protein NP_563163.1 2573650 R 195102 CDS NP_563164.1 18311230 990583 complement(2579928..2580497) 1 NC_003366.1 similar to pir:B70156 probable chromate transport protein from Borrelia burgdorferi (177 aa); 34.8% identity in 178 aa overlap. 5 transmembrane regions were found by PSORT.; chromate transporter 2580497 990583 CPE2248 Clostridium perfringens str. 13 chromate transporter NP_563164.1 2579928 R 195102 CDS NP_563165.1 18311231 990584 complement(2580484..2581035) 1 NC_003366.1 partially similar to pir:G71379 probable chromate transport protein from Treponema pallidum (456 aa); 35.8% identity in 173 aa overlap. 4 transmembrane regions were found by PSORT.; chromate transporter 2581035 990584 CPE2249 Clostridium perfringens str. 13 chromate transporter NP_563165.1 2580484 R 195102 CDS NP_563166.1 18311232 990585 2581458..2582162 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2582162 990585 CPE2250 Clostridium perfringens str. 13 hypothetical protein NP_563166.1 2581458 D 195102 CDS NP_563167.1 18311233 990586 complement(2582494..2583945) 1 NC_003366.1 similar to pir:JU0300 X-His dipeptidase (EC 3.4.13.3) from Escherichia coli (485 aa); 38.4% identity in 482 aa overlap. 1 transmembrane region was found by PSORT; aminoacyl-histidine dipeptidase 2583945 pepD 990586 pepD Clostridium perfringens str. 13 aminoacyl-histidine dipeptidase NP_563167.1 2582494 R 195102 CDS NP_563168.1 18311234 990605 complement(2586002..2586472) 1 NC_003366.1 similar to sp:YSNB_BACSU HYPOTHETICAL 19.2 KDA PROTEIN IN RPH-ILVB INTERGENIC REGION from Bacillus subtilis (171 aa); 34.4% identity in 154 aa overlap; Ser/Thr protein phosphatase 2586472 990605 CPE2252 Clostridium perfringens str. 13 Ser/Thr protein phosphatase NP_563168.1 2586002 R 195102 CDS NP_563169.1 18311235 990606 complement(2586484..2587098) 1 NC_003366.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 2587098 990606 CPE2253 Clostridium perfringens str. 13 deoxyribonucleotide triphosphate pyrophosphatase NP_563169.1 2586484 R 195102 CDS NP_563170.1 18311236 990607 complement(2587100..2587846) 1 NC_003366.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 2587846 rph 990607 rph Clostridium perfringens str. 13 ribonuclease PH NP_563170.1 2587100 R 195102 CDS NP_563171.1 18311237 990608 2588068..2589771 1 NC_003366.1 no significant homology; hypothetical protein 2589771 990608 CPE2255 Clostridium perfringens str. 13 hypothetical protein NP_563171.1 2588068 D 195102 CDS NP_563172.1 18311238 990609 complement(2589975..2591495) 1 NC_003366.1 partially similar to sp:OPPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN OPPA PRECURSOR from Bacillus subtilis (545 aa); 29.6% identity in 257 aa overlap. N-terminal signal sequence was found by PSORT; oligopeptide-binding protein 2591495 990609 CPE2256 Clostridium perfringens str. 13 oligopeptide-binding protein NP_563172.1 2589975 R 195102 CDS NP_563173.1 18311239 990610 complement(2593111..2593575) 1 NC_003366.1 no significant homology; hypothetical protein 2593575 990610 CPE2257 Clostridium perfringens str. 13 hypothetical protein NP_563173.1 2593111 R 195102 CDS NP_563174.1 18311240 990611 2593699..2594022 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2594022 990611 CPE2258 Clostridium perfringens str. 13 hypothetical protein NP_563174.1 2593699 D 195102 CDS NP_563175.1 18311241 990612 complement(2594060..2596057) 1 NC_003366.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 2596057 ligA 990612 ligA Clostridium perfringens str. 13 NAD-dependent DNA ligase LigA NP_563175.1 2594060 R 195102 CDS NP_563176.1 18311242 990613 complement(2596086..2598341) 1 NC_003366.1 similar to gpu:AP001509_86 ATP-dependent DNA helicase from Bacillus halodurans (747 aa); 50.1% identity in 742 aa overlap; ATP-dependent DNA helicase PcrA 2598341 990613 CPE2260 Clostridium perfringens str. 13 ATP-dependent DNA helicase PcrA NP_563176.1 2596086 R 195102 CDS NP_563177.1 18311243 990614 complement(2598553..2599341) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2599341 990614 CPE2261 Clostridium perfringens str. 13 hypothetical protein NP_563177.1 2598553 R 195102 CDS NP_563178.1 18311244 990615 complement(2599358..2599906) 1 NC_003366.1 partially similar to gpu:AP001514_135 spore coat-associated protein from Bacillus halodurans (210 aa); 27.2% identity in 92 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2599906 990615 CPE2262 Clostridium perfringens str. 13 hypothetical protein NP_563178.1 2599358 R 195102 CDS NP_563179.1 18311245 990616 complement(2599908..2600579) 1 NC_003366.1 no significant homology N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 2600579 990616 CPE2263 Clostridium perfringens str. 13 hypothetical protein NP_563179.1 2599908 R 195102 CDS NP_563180.1 18311246 990617 complement(2601132..2601851) 1 NC_003366.1 similar to gpu:AP001518_104 16S pseudouridylate synthase from Bacillus halodurans (238 aa); 49.1% identity in 214 aa overlap; 16S pseudouridylate synthase 2601851 990617 CPE2264 Clostridium perfringens str. 13 16S pseudouridylate synthase NP_563180.1 2601132 R 195102 CDS NP_563181.1 18311247 990618 complement(2602225..2604285) 1 NC_003366.1 similar to sp:COLA_CLOPE MICROBIAL COLLAGENASE PRECURSOR (EC 3.4.24.3) (120 KDA COLLAGENASE) from Clostridium perfringens (1104 aa); 19.5% identity in 416 aa overlap; triple tyrosine motif-containing protein 2604285 990618 CPE2265 Clostridium perfringens str. 13 triple tyrosine motif-containing protein NP_563181.1 2602225 R 195102 CDS NP_563182.1 18311248 990619 complement(2604658..2605107) 1 NC_003366.1 similar to gpu:AP001511_263 BH1374 gene product from Bacillus halodurans (157 aa); 41.7% identity in 132 aa overlap; hypothetical protein 2605107 990619 CPE2266 Clostridium perfringens str. 13 hypothetical protein NP_563182.1 2604658 R 195102 CDS NP_563183.1 18311249 990620 complement(2605305..2606657) 1 NC_003366.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 2606657 pgi 990620 pgi Clostridium perfringens str. 13 glucose-6-phosphate isomerase NP_563183.1 2605305 R 195102 CDS NP_563184.1 18311250 990621 complement(2606687..2606896) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2606896 990621 CPE2268 Clostridium perfringens str. 13 hypothetical protein NP_563184.1 2606687 R 195102 CDS NP_563185.1 18311251 990622 complement(2607098..2608066) 1 NC_003366.1 similar to sp:APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPF from Bacillus subtilis (329 aa); 59.9% identity in 317 aa overlap; ATP-binding protein; oligopeptide ABC transporter 2608066 appF 990622 appF Clostridium perfringens str. 13 oligopeptide ABC transporter NP_563185.1 2607098 R 195102 CDS NP_563186.1 18311252 990623 complement(2608067..2609044) 1 NC_003366.1 similar to gpu:AP001519_161 oligopeptide ABC transporter (ATP-binding protein) from Bacillus halodurans (329 aa); 56% identity in 323 aa overlap. 1 transmembrane region was found by PSORT; ATP-binding protein; oligopeptide ABC transporter 2609044 appD 990623 appD Clostridium perfringens str. 13 oligopeptide ABC transporter NP_563186.1 2608067 R 195102 CDS NP_563187.1 18311253 990624 complement(2609058..2609972) 1 NC_003366.1 similar to gp:AF042861_3 OppC from Treponema denticola (338 aa); 42.7% identity in 246 aa overlap. 6 transmembrane regions were found by PSORT.; permease; oligopeptide ABC transporter 2609972 appC 990624 appC Clostridium perfringens str. 13 oligopeptide ABC transporter NP_563187.1 2609058 R 195102 CDS NP_563188.1 18311254 990625 complement(2609987..2610952) 1 NC_003366.1 similar to pir:B75381 peptide ABC transporter, permease from Deinococcus radiodurans (strain R1) (333 aa); 41% identity in 322 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; permease; oligopeptide ABC transporter 2610952 appB 990625 appB Clostridium perfringens str. 13 oligopeptide ABC transporter NP_563188.1 2609987 R 195102 CDS NP_563189.1 18311255 990626 complement(2611027..2612766) 1 NC_003366.1 similar to sp:APPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN APPA PRECURSOR from Bacillus subtilis (543 aa); 33.6% identity in 506 aa overlap. N-terminal signal sequence was found by PSORT; binding protein; oligopeptide ABC transporter 2612766 appA 990626 appA Clostridium perfringens str. 13 oligopeptide ABC transporter NP_563189.1 2611027 R 195102 CDS NP_563190.1 18311256 990627 2613396..2614688 1 NC_003366.1 similar to gp:PSNARXL_3 nitrate extrusion protein from Pseudomonas aeruginosa (431 aa); 27.3% identity in 315 aa overlap. 11 transmembrane regions were found by PSORT.; nitrate extrusion protein 2614688 narK 990627 narK Clostridium perfringens str. 13 nitrate extrusion protein NP_563190.1 2613396 D 195102 CDS NP_563191.1 18311257 990628 complement(2615047..2616576) 1 NC_003366.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2616576 guaA 990628 guaA Clostridium perfringens str. 13 GMP synthase NP_563191.1 2615047 R 195102 CDS NP_563192.1 18311258 990629 complement(2616682..2618136) 1 NC_003366.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 2618136 990629 CPE2276 Clostridium perfringens str. 13 inosine 5'-monophosphate dehydrogenase NP_563192.1 2616682 R 195102 CDS NP_563193.1 18311259 990630 complement(2618846..2621467) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2621467 990630 CPE2277 Clostridium perfringens str. 13 hypothetical protein NP_563193.1 2618846 R 195102 CDS NP_563194.1 18311260 990631 complement(2621491..2622051) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2622051 990631 CPE2278 Clostridium perfringens str. 13 hypothetical protein NP_563194.1 2621491 R 195102 CDS NP_563195.1 18311261 990632 complement(2622077..2624185) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2624185 990632 CPE2279 Clostridium perfringens str. 13 hypothetical protein NP_563195.1 2622077 R 195102 CDS NP_563196.1 18311262 990633 complement(2624190..2625191) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2625191 990633 CPE2280 Clostridium perfringens str. 13 hypothetical protein NP_563196.1 2624190 R 195102 CDS NP_563197.1 18311263 990634 complement(2625212..2626429) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2626429 990634 CPE2281 Clostridium perfringens str. 13 hypothetical protein NP_563197.1 2625212 R 195102 CDS NP_563198.1 18311264 990635 complement(2626419..2626985) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2626985 990635 CPE2282 Clostridium perfringens str. 13 hypothetical protein NP_563198.1 2626419 R 195102 CDS NP_563199.1 18311265 990636 complement(2627000..2628154) 1 NC_003366.1 similar to pir:C75477 probable fimbrial assembly protein PilM from Deinococcus radiodurans (strain R1) (391 aa); 18.3% identity in 334 aa overlap; type IV pilus assembly protein PilM 2628154 990636 CPE2283 Clostridium perfringens str. 13 type IV pilus assembly protein PilM NP_563199.1 2627000 R 195102 CDS NP_563200.1 18311266 990637 complement(2628270..2628818) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2628818 990637 CPE2284 Clostridium perfringens str. 13 hypothetical protein NP_563200.1 2628270 R 195102 CDS NP_563201.1 18311267 990638 complement(2628890..2630095) 1 NC_003366.1 similar to pir:A75344 pilin biogenesis protein from Deinococcus radiodurans (strain R1) (406 aa); 32.3% identity in 400 aa overlap. 3 transmembrane regions were found by PSORT.; type II secretion system protein F 2630095 990638 CPE2285 Clostridium perfringens str. 13 type II secretion system protein F NP_563201.1 2628890 R 195102 CDS NP_563202.1 18311268 990639 complement(2630122..2631813) 1 NC_003366.1 similar to gpu:AE004128_11 MSHA biogenesis protein MshE from Vibrio cholerae (575 aa); 41% identity in 558 aa overlap; secretion system protein E 2631813 990639 CPE2286 Clostridium perfringens str. 13 secretion system protein E NP_563202.1 2630122 R 195102 CDS NP_563203.1 18311269 990640 complement(2631883..2632626) 1 NC_003366.1 partially similar to pir:A75321 prepilin peptidase, type IV from Deinococcus radiodurans (strain R1) (388 aa); 38.8% identity in 201 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; prepilin peptidase 2632626 990640 CPE2287 Clostridium perfringens str. 13 prepilin peptidase NP_563203.1 2631883 R 195102 CDS NP_563204.1 18311270 990641 complement(2632902..2633324) 1 NC_003366.1 similar to sp:PPDA_CLOPE PREPILIN PEPTIDASE DEPENDENT PROTEIN A PRECURSOR from Clostridium perfringens (140 aa); 78.6% identity in 140 aa overlap. 1 transmembrane region was found by PSORT; prepilin peptidase dependent protein A 2633324 990641 CPE2288 Clostridium perfringens str. 13 prepilin peptidase dependent protein A NP_563204.1 2632902 R 195102 CDS NP_563205.1 18311271 990642 complement(2633990..2635609) 1 NC_003366.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 2635609 groEL 990642 groEL Clostridium perfringens str. 13 molecular chaperone GroEL NP_563205.1 2633990 R 195102 CDS NP_563206.1 18311272 990643 complement(2635664..2635948) 1 NC_003366.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 2635948 groES 990643 groES Clostridium perfringens str. 13 co-chaperonin GroES NP_563206.1 2635664 R 195102 CDS NP_563207.1 18311273 990644 2636319..2636969 1 NC_003366.1 no significant homology N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 2636969 990644 CPE2291 Clostridium perfringens str. 13 hypothetical protein NP_563207.1 2636319 D 195102 CDS NP_563208.1 18311274 990645 2637112..2637423 1 NC_003366.1 similar to pir:B69836 hypothetical protein yisB from Bacillus subtilis (100 aa); 52.2% identity in 92 aa overlap; hypothetical protein 2637423 990645 CPE2292 Clostridium perfringens str. 13 hypothetical protein NP_563208.1 2637112 D 195102 CDS NP_563209.1 18311275 990646 complement(2637545..2638483) 1 NC_003366.1 similar to pir:E69045 8-oxoguanine DNA glycosylase from Methanobacterium thermoautotrophicum (strain Delta H) (312 aa); 34.7% identity in 245 aa overlap; 8-oxoguanine DNA glycosylase 2638483 990646 CPE2293 Clostridium perfringens str. 13 8-oxoguanine DNA glycosylase NP_563209.1 2637545 R 195102 CDS NP_563210.1 18311276 990647 complement(2638493..2638897) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2638897 990647 CPE2294 Clostridium perfringens str. 13 hypothetical protein NP_563210.1 2638493 R 195102 CDS NP_563211.1 18311277 990648 complement(2639141..2639641) 1 NC_003366.1 similar to gp:CPSPC21_1 spc21 gene product from Clostridium perfringens (82 aa); 98.8% identity in 82 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; signal peptidase type I 2639641 lepW 990648 lepW Clostridium perfringens str. 13 signal peptidase type I NP_563211.1 2639141 R 195102 CDS NP_563212.1 18311278 990649 complement(2639783..2641483) 1 NC_003366.1 similar to sp:YWJA_BACSU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN IN ACDA 5'REGION from Bacillus subtilis (575 aa); 46.1% identity in 564 aa overlap. 4 transmembrane regions were found by PSORT.; ATP-binding protein; ABC transporter 2641483 990649 CPE2296 Clostridium perfringens str. 13 ABC transporter NP_563212.1 2639783 R 195102 CDS NP_563213.1 18311279 990650 complement(2641742..2642590) 1 NC_003366.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 2642590 990650 CPE2297 Clostridium perfringens str. 13 3-hydroxybutyryl-CoA dehydrogenase NP_563213.1 2641742 R 195102 CDS NP_563214.1 18311280 990651 complement(2642704..2643711) 1 NC_003366.1 similar to sp:FIXB_CLOAB FIXB PROTEIN from Clostridium acetobutylicum (334 aa); 73.9% identity in 329 aa overlap; 3-hydroxybutyryl-CoA dehydrogenase 2643711 fixB 990651 fixB Clostridium perfringens str. 13 3-hydroxybutyryl-CoA dehydrogenase NP_563214.1 2642704 R 195102 CDS NP_563215.1 18311281 990652 complement(2643733..2644512) 1 NC_003366.1 similar to sp:ETFB_CLOAB ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT (BETA-ETF) (ELECTRON TRANSFER FLAVOPROTEIN SMALL SUBUNIT) (ETFSS) from Clostridium acetobutylicum (252 aa); 71.4% identity in 245 aa overlap; electron transfer flavoprotein subunit beta 2644512 etfB 990652 etfB Clostridium perfringens str. 13 electron transfer flavoprotein subunit beta NP_563215.1 2643733 R 195102 CDS NP_563216.1 18311282 990653 complement(2644531..2645670) 1 NC_003366.1 similar to sp:ACDS_CLOAB ACYL-COA DEHYDROGENASE, SHORT-CHAIN SPECIFIC (EC 1.3.99.2) (SCAD) (BUTYRYL-COA DEHYDROGENASE) from Clostridium acetobutylicum (379 aa); 72.6% identity in 379 aa overlap. 1 transmembrane region was found by PSORT; butyryl-CoA dehydrogenase 2645670 bcd 990653 bcd Clostridium perfringens str. 13 butyryl-CoA dehydrogenase NP_563216.1 2644531 R 195102 CDS NP_563217.1 18311283 990654 complement(2645717..2646499) 1 NC_003366.1 catalyzes the formation of crotonoyl-CoA from (3R)-3-hydroxybutanoyl-CoA; 3-hydroxybutyryl-CoA dehydratase 2646499 crt 990654 crt Clostridium perfringens str. 13 3-hydroxybutyryl-CoA dehydratase NP_563217.1 2645717 R 195102 CDS NP_563218.1 18311284 990655 complement(2646762..2647400) 1 NC_003366.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 2647400 990655 CPE2302 Clostridium perfringens str. 13 redox-sensing transcriptional repressor Rex NP_563218.1 2646762 R 195102 CDS NP_563219.1 18311285 990656 complement(2647890..2650088) 1 NC_003366.1 similar to pir:D70041 heavy metal-transporting ATPase homolog yvgW from Bacillus subtilis (702 aa); 55.8% identity in 588 aa overlap. 6 transmembrane regions were found by PSORT.; heavy metal-transporting ATPase 2650088 990656 CPE2303 Clostridium perfringens str. 13 heavy metal-transporting ATPase NP_563219.1 2647890 R 195102 CDS NP_563220.1 18311286 990657 complement(2650104..2650463) 1 NC_003366.1 similar to sp:CADF_STAAU CADMIUM EFFLUX SYSTEM ACCESSORY PROTEIN HOMOLOG from Staphylococcus aureus (121 aa); 45.1% identity in 113 aa overlap; ArsC family; transcriptional regulator 2650463 990657 CPE2304 Clostridium perfringens str. 13 transcriptional regulator NP_563220.1 2650104 R 195102 CDS NP_563221.1 18311287 990658 complement(2650598..2651218) 1 NC_003366.1 similar to pir:C69405 hypothetical protein AF1244 from Archaeoglobus fulgidus (161 aa); 38.3% identity in 60 aa overlap; hypothetical protein 2651218 990658 CPE2305 Clostridium perfringens str. 13 hypothetical protein NP_563221.1 2650598 R 195102 CDS NP_563222.1 18311288 990659 complement(2651306..2651884) 1 NC_003366.1 no significant homology; hypothetical protein 2651884 990659 CPE2306 Clostridium perfringens str. 13 hypothetical protein NP_563222.1 2651306 R 195102 CDS NP_563223.1 18311289 990660 complement(2652430..2652840) 1 NC_003366.1 no significant homology; hypothetical protein 2652840 990660 CPE2307 Clostridium perfringens str. 13 hypothetical protein NP_563223.1 2652430 R 195102 CDS NP_563224.1 18311290 990661 complement(2653069..2654139) 1 NC_003366.1 similar to pir:B75596 mannose-1-phosphate guanylyltransferase from Deinococcus radiodurans (strain R1) (372 aa); 34.8% identity in 359 aa overlap; mannose-1-phosphate guanylyltransferase 2654139 990661 CPE2308 Clostridium perfringens str. 13 mannose-1-phosphate guanylyltransferase NP_563224.1 2653069 R 195102 CDS NP_563225.1 18311291 990662 complement(2654377..2655756) 1 NC_003366.1 similar to gpu:AP001520_142 beta-glucosidase from Bacillus halodurans (466 aa); 57.5% identity in 457 aa overlap; beta-glucosidase 2655756 990662 CPE2309 Clostridium perfringens str. 13 beta-glucosidase NP_563225.1 2654377 R 195102 CDS NP_563226.1 18311292 990663 complement(2656453..2657829) 1 NC_003366.1 similar to gpu:AP001510_40 aldehyde dehydrogenase from Bacillus halodurans (452 aa); 47% identity in 455 aa overlap; aldehyde dehydrogenase 2657829 aldH 990663 aldH Clostridium perfringens str. 13 aldehyde dehydrogenase NP_563226.1 2656453 R 195102 CDS NP_563227.1 18311293 990664 complement(2657979..2658689) 1 NC_003366.1 similar to gpu:AP001510_192 BH1017 gene product from Bacillus halodurans (202 aa); 30% identity in 200 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2658689 990664 CPE2311 Clostridium perfringens str. 13 hypothetical protein NP_563227.1 2657979 R 195102 CDS NP_563228.1 18311294 990665 2658798..2659739 1 NC_003366.1 similar to sp:YQKD_BACSU HYPOTHETICAL 34.6 KDA PROTEIN IN GLNQ-ANSR INTERGENIC REGION from Bacillus subtilis (305 aa); 34.5% identity in 223 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 2659739 990665 CPE2312 Clostridium perfringens str. 13 hypothetical protein NP_563228.1 2658798 D 195102 CDS NP_563229.1 18311295 990666 complement(2659981..2660886) 1 NC_003366.1 similar to gpu:AE004294_7 pseudouridine synthase 1 protein from Vibrio cholerae (340 aa); 67.4% identity in 239 aa overlap; hypothetical protein 2660886 990666 CPE2313 Clostridium perfringens str. 13 hypothetical protein NP_563229.1 2659981 R 195102 CDS NP_563230.1 18311296 990667 complement(2660908..2661921) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2661921 990667 CPE2314 Clostridium perfringens str. 13 hypothetical protein NP_563230.1 2660908 R 195102 CDS NP_563231.1 18311297 990668 complement(2661982..2662659) 1 NC_003366.1 similar to gpu:AP001514_133 BH2127 gene product from Bacillus halodurans (194 aa); 36.9% identity in 130 aa overlap. N-terminal signal sequence was found by PSORT; sortase 2662659 990668 CPE2315 Clostridium perfringens str. 13 sortase NP_563231.1 2661982 R 195102 CDS NP_563232.1 18311298 990669 2663009..2663479 1 NC_003366.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 2663479 ispF 990669 ispF Clostridium perfringens str. 13 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase NP_563232.1 2663009 D 195102 CDS NP_563233.1 18311299 990670 complement(2663655..2664968) 1 NC_003366.1 similar to gpu:AE004359_10 Na+/H+ antiporter, from Vibrio cholerae (447 aa); 36.5% identity in 414 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; Na+/H+ antiporter 2664968 990670 CPE2317 Clostridium perfringens str. 13 Na+/H+ antiporter NP_563233.1 2663655 R 195102 CDS NP_563234.1 18311300 990671 complement(2665305..2666147) 1 NC_003366.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 2666147 990671 CPE2318 Clostridium perfringens str. 13 pyridoxamine kinase NP_563234.1 2665305 R 195102 CDS NP_563235.1 18311301 990676 complement(2666820..2667512) 1 NC_003366.1 no significant homology; hypothetical protein 2667512 990676 CPE2319 Clostridium perfringens str. 13 hypothetical protein NP_563235.1 2666820 R 195102 CDS NP_563236.1 18311302 990677 2667702..2668106 1 NC_003366.1 no significant homology; hypothetical protein 2668106 990677 CPE2320 Clostridium perfringens str. 13 hypothetical protein NP_563236.1 2667702 D 195102 CDS NP_563237.1 18311303 990678 complement(2668165..2669574) 1 NC_003366.1 similar to sp:YQEF_BACSU HYPOTHETICAL 27.6 KDA LIPOPROTEIN IN NUCB-AROD INTERGENIC REGION from Bacillus subtilis (243 aa); 32% identity in 181 aa overlap; hypothetical protein 2669574 990678 CPE2321 Clostridium perfringens str. 13 hypothetical protein NP_563237.1 2668165 R 195102 CDS NP_563238.1 18311304 990684 2670843..2672774 1 NC_003366.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2672774 thrS 990684 thrS Clostridium perfringens str. 13 threonyl-tRNA synthetase NP_563238.1 2670843 D 195102 CDS NP_563239.1 18311305 990685 complement(2673241..2674935) 1 NC_003366.1 similar to pir:E71251 probable oligoendopeptidase F from Treponema pallidum (589 aa); 44.6% identity in 560 aa overlap; oligoendopeptidase 2674935 990685 CPE2323 Clostridium perfringens str. 13 oligoendopeptidase NP_563239.1 2673241 R 195102 CDS NP_563240.1 18311306 990686 complement(2675031..2675609) 1 NC_003366.1 similar to pir:C70449 conserved hypothetical protein aq_1731 from Aquifex aeolicus (186 aa); 37.6% identity in 178 aa overlap; 5-formyltetrahydrofolate cyclo-ligase 2675609 990686 CPE2324 Clostridium perfringens str. 13 5-formyltetrahydrofolate cyclo-ligase NP_563240.1 2675031 R 195102 CDS NP_563241.1 18311307 990687 complement(2675835..2676647) 1 NC_003366.1 partially similar to pir:G69742 hypothetical protein ybaJ from Bacillus subtilis (255 aa); 36.6% identity in 101 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 2676647 990687 CPE2325 Clostridium perfringens str. 13 hypothetical protein NP_563241.1 2675835 R 195102 CDS NP_563242.1 18311308 990688 complement(2676861..2677031) 1 NC_003366.1 no significant homology; hypothetical protein 2677031 990688 CPE2326 Clostridium perfringens str. 13 hypothetical protein NP_563242.1 2676861 R 195102 CDS NP_563243.1 18311309 990689 complement(2677051..2678883) 1 NC_003366.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 2678883 glmS 990689 glmS Clostridium perfringens str. 13 glucosamine--fructose-6-phosphate aminotransferase NP_563243.1 2677051 R 195102 CDS NP_563244.1 18311310 990690 2679676..2680200 1 NC_003366.1 similar to pir:A75157 hypothetical protein PAB2074 from Pyrococcus abyssi (strain Orsay) (101 aa); 36.4% identity in 66 aa overlap; hypothetical protein 2680200 990690 CPE2328 Clostridium perfringens str. 13 hypothetical protein NP_563244.1 2679676 D 195102 CDS NP_563245.1 18311311 990691 complement(2680350..2681696) 1 NC_003366.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 2681696 glmM 990691 glmM Clostridium perfringens str. 13 phosphoglucosamine mutase NP_563245.1 2680350 R 195102 CDS NP_563246.1 18311312 990692 2682169..2683461 1 NC_003366.1 partially similar to gp:SCL2_1 hypothetical protein SCL2.01 from Streptomyces coelicolor A3(2) (328 aa); 24.4% identity in 197 aa overlap; hypothetical protein 2683461 990692 CPE2330 Clostridium perfringens str. 13 hypothetical protein NP_563246.1 2682169 D 195102 CDS NP_563247.1 18311313 990693 complement(2683722..2685125) 1 NC_003366.1 similar to gp:EFA012050_2 VicK protein from Enterococcus faecalis (611 aa); 40.4% identity in 225 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; two-component sensor histidine kinase 2685125 990693 CPE2331 Clostridium perfringens str. 13 two-component sensor histidine kinase NP_563247.1 2683722 R 195102 CDS NP_563248.1 18311314 990694 complement(2685106..2685798) 1 NC_003366.1 similar to gp:SPAJ6394_1 response regulator from Streptococcus pneumoniae (235 aa); 41.5% identity in 224 aa overlap; two-component response regulator 2685798 990694 CPE2332 Clostridium perfringens str. 13 two-component response regulator NP_563248.1 2685106 R 195102 CDS NP_563249.1 18311315 990695 complement(2685968..2686285) 1 NC_003366.1 no significant homology; hypothetical protein 2686285 990695 CPE2333 Clostridium perfringens str. 13 hypothetical protein NP_563249.1 2685968 R 195102 CDS NP_563250.1 18311316 990696 complement(2686351..2686650) 1 NC_003366.1 similar to pir:B69794 hypothetical protein yerC from Bacillus subtilis (104 aa); 63% identity in 92 aa overlap; TrpR-like protein YerC/YecD 2686650 990696 CPE2334 Clostridium perfringens str. 13 TrpR-like protein YerC/YecD NP_563250.1 2686351 R 195102 CDS NP_563251.1 18311317 990697 complement(2686790..2687629) 1 NC_003366.1 similar to pir:C75527 conserved hypothetical protein from Deinococcus radiodurans (strain R1) (255 aa); 30.5% identity in 233 aa overlap; hypothetical protein 2687629 990697 CPE2335 Clostridium perfringens str. 13 hypothetical protein NP_563251.1 2686790 R 195102 CDS NP_563252.1 18311318 990698 complement(2687746..2689764) 1 NC_003366.1 similar to pir:H75549 glycogen debranching enzyme-related protein from Deinococcus radiodurans (strain R1) (804 aa); 29.9% identity in 445 aa overlap; glycogen debranching protein 2689764 gde 990698 gde Clostridium perfringens str. 13 glycogen debranching protein NP_563252.1 2687746 R 195102 CDS NP_563253.1 18311319 990699 complement(2690107..2692470) 1 NC_003366.1 similar to pir:S77252 phosphorylase (EC 2.4.1.1) 2 from Synechocystis sp. (strain PCC 6803) (855 aa); 48.5% identity in 753 aa overlap; glycogen phosphorylase 2692470 glgP 990699 glgP Clostridium perfringens str. 13 glycogen phosphorylase NP_563253.1 2690107 R 195102 CDS NP_563254.1 18311320 990700 complement(2692463..2693956) 1 NC_003366.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 2693956 malQ 990700 malQ Clostridium perfringens str. 13 4-alpha-glucanotransferase NP_563254.1 2692463 R 195102 CDS NP_563255.1 18311321 990701 complement(2693978..2696125) 1 NC_003366.1 similar to gp:AAC252161_6 alpha-glucosidase from Alicyclobacillus acidocaldarius (728 aa); 35.4% identity in 611 aa overlap; alpha-glucosidase 2696125 990701 CPE2339 Clostridium perfringens str. 13 alpha-glucosidase NP_563255.1 2693978 R 195102 CDS NP_563256.1 18311322 990702 complement(2696149..2697162) 1 NC_003366.1 similar to sp:MALR_CLOBU TRANSCRIPTIONAL REGULATORY PROTEIN MALR from Clostridium butyricum (335 aa); 61.9% identity in 333 aa overlap; LacI family; LacI family transcriptional regulator 2697162 malR 990702 malR Clostridium perfringens str. 13 LacI family transcriptional regulator NP_563256.1 2696149 R 195102 CDS NP_563257.1 18311323 990703 complement(2697457..2698350) 1 NC_003366.1 similar to gp:AAC252161_3 maltose transport membrane protein from Alicyclobacillus acidocaldarius (301 aa); 41.6% identity in 296 aa overlap. 6 transmembrane regions were found by PSORT.; permease; maltose ABC transporter 2698350 990703 CPE2341 Clostridium perfringens str. 13 maltose ABC transporter NP_563257.1 2697457 R 195102 CDS NP_563258.1 18311324 990704 complement(2698352..2699305) 1 NC_003366.1 similar to gp:AAC252161_2 maltose transport membrane protein from Alicyclobacillus acidocaldarius (321 aa); 39.4% identity in 307 aa overlap. 5 transmembrane regions were found by PSORT.; permease; maltose ABC transporter 2699305 990704 CPE2342 Clostridium perfringens str. 13 maltose ABC transporter NP_563258.1 2698352 R 195102 CDS NP_563259.1 18311325 990705 complement(2699392..2700618) 1 NC_003366.1 similar to gp:AAC252161_1 maltose binding protein from Alicyclobacillus acidocaldarius (427 aa); 41.7% identity in 405 aa overlap; maltose-binding protein; maltose ABC transporter 2700618 990705 CPE2343 Clostridium perfringens str. 13 maltose ABC transporter NP_563259.1 2699392 R 195102 CDS NP_563260.1 18311326 990706 complement(2701079..2702020) 1 NC_003366.1 similar to gp:AB035092_6 Orf6 from Clostridium perfringens (313 aa); 96.5% identity in 313 aa overlap; hypothetical protein 2702020 990706 CPE2344 Clostridium perfringens str. 13 hypothetical protein NP_563260.1 2701079 R 195102 CDS NP_563261.1 18311327 990707 complement(2702055..2703164) 1 NC_003366.1 similar to gp:AB035092_5 Orf5 from Clostridium perfringen (369 aa); 98.6% identity in 369 aa overlap; ATP-binding protein; maltose ABC transporter 2703164 990707 CPE2345 Clostridium perfringens str. 13 maltose ABC transporter NP_563261.1 2702055 R 195102 CDS NP_563262.1 18311328 990708 complement(2703382..2705100) 1 NC_003366.1 similar to gp:AB016820_1 hydrogenase (EC 1.18.99.1) from Clostridium perfringens (572 aa); 100% identity in 572 aa overlap; iron hydrogenase 2705100 hydA 990708 hydA Clostridium perfringens str. 13 iron hydrogenase NP_563262.1 2703382 R 195102 CDS NP_563263.1 18311329 990709 complement(2705326..2706396) 1 NC_003366.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 2706396 buk 990709 buk Clostridium perfringens str. 13 butyrate kinase NP_563263.1 2705326 R 195102 CDS NP_563264.1 18311330 990710 complement(2706421..2707410) 1 NC_003366.1 catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate; phosphate butyryltransferase 2707410 ptb 990710 ptb Clostridium perfringens str. 13 phosphate butyryltransferase NP_563264.1 2706421 R 195102 CDS NP_563265.1 18311331 990711 complement(2707512..2709113) 1 NC_003366.1 similar to gp:AB035092_1 Orf1 from Clostridium perfringens (533 aa); 94% identity in 533 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 2709113 990711 CPE2349 Clostridium perfringens str. 13 hypothetical protein NP_563265.1 2707512 R 195102 CDS NP_563266.1 18311332 990712 complement(2709189..2710517) 1 NC_003366.1 similar to pir:A69745 hypothetical protein ybbR from Bacillus subtilis (483 aa); 22.8% identity in 403 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2710517 990712 CPE2350 Clostridium perfringens str. 13 hypothetical protein NP_563266.1 2709189 R 195102 CDS NP_563267.1 18311333 990713 complement(2710484..2711341) 1 NC_003366.1 similar to gpu:AP001507_265 BH0265 gene product from Bacillus halodurans (274 aa); 42.8% identity in 229 aa overlap. 4 transmembrane regions were found by PSORT.; hypothetical protein 2711341 990713 CPE2351 Clostridium perfringens str. 13 hypothetical protein NP_563267.1 2710484 R 195102 CDS NP_563268.1 18311334 990714 2711502..2712464 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2712464 990714 CPE2352 Clostridium perfringens str. 13 hypothetical protein NP_563268.1 2711502 D 195102 CDS NP_563269.1 18311335 990715 2712535..2713137 1 NC_003366.1 similar to rf:2220325A MurNAc-Ala amidase from Bacillus cereus (259 aa); 44.4% identity in 126 aa overlap. N-terminal signal sequence was found by PSORT; spore cortex-lytic protein 2713137 990715 CPE2353 Clostridium perfringens str. 13 spore cortex-lytic protein NP_563269.1 2712535 D 195102 CDS NP_563270.1 18311336 990716 complement(2713169..2714029) 1 NC_003366.1 similar to pir:A69444 thioredoxin reductase (NADPH) (EC 1.6.4.5) from Archaeoglobus fulgidus (300 aa); 40.7% identity in 280 aa overlap; thioredoxin reductase 2714029 trxR 990716 trxR Clostridium perfringens str. 13 thioredoxin reductase NP_563270.1 2713169 R 195102 CDS NP_563271.1 18311337 990717 complement(2714056..2714370) 1 NC_003366.1 similar to sp:THIO_CYACA THIOREDOXIN. from Chloroplast Cyanidium caldarium (107 aa); 50% identity in 100 aa overlap; thioredoxin 2714370 990717 CPE2355 Clostridium perfringens str. 13 thioredoxin NP_563271.1 2714056 R 195102 CDS NP_563272.1 18311338 990718 complement(2714487..2715656) 1 NC_003366.1 similar to gpu:AP001511_18 isoaspartyl dipeptidase from Bacillus halodurans (391 aa); 47.7% identity in 386 aa overlap; isoaspartyl dipeptidase 2715656 990718 CPE2356 Clostridium perfringens str. 13 isoaspartyl dipeptidase NP_563272.1 2714487 R 195102 CDS NP_563273.1 18311339 990719 complement(2715821..2717440) 1 NC_003366.1 similar to gpu:AP001517_195 PTS system, enzyme I from Bacillus halodurans (572 aa); 58.1% identity in 534 aa overlap; PTS system enzyme I; phosphoenolpyruvate-protein phosphotransferase 2717440 990719 CPE2357 Clostridium perfringens str. 13 phosphoenolpyruvate-protein phosphotransferase NP_563273.1 2715821 R 195102 CDS NP_563274.1 18311340 990720 2717915..2719921 1 NC_003366.1 similar to sp:YQIR_BACSU SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR IN MMGE-BFMBAA INTERGENIC REGION from Bacillus subtilis (692 aa); 38.9% identity in 524 aa overlap. 1 transmembrane region was found by PSORT; sigma-L-dependent transcriptional regulator 2719921 990720 CPE2358 Clostridium perfringens str. 13 sigma-L-dependent transcriptional regulator NP_563274.1 2717915 D 195102 CDS NP_563275.1 18311341 990721 complement(2720091..2720684) 1 NC_003366.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 2720684 rpsD 990721 rpsD Clostridium perfringens str. 13 30S ribosomal protein S4 NP_563275.1 2720091 R 195102 CDS NP_563276.1 18311342 990722 complement(2721085..2722119) 1 NC_003366.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2722119 nrdF 990722 nrdF Clostridium perfringens str. 13 ribonucleotide-diphosphate reductase subunit beta NP_563276.1 2721085 R 195102 CDS NP_563277.1 18311343 990723 complement(2722215..2724446) 1 NC_003366.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2724446 nrdA 990723 nrdA Clostridium perfringens str. 13 ribonucleotide-diphosphate reductase subunit alpha NP_563277.1 2722215 R 195102 CDS NP_563278.1 18311344 990724 complement(2724730..2725086) 1 NC_003366.1 similar to gpu:AP001518_316 arsenate reductase from Bacillus halodurans (119 aa); 60.2% identity in 118 aa overlap; ArsC family protein 2725086 990724 CPE2362 Clostridium perfringens str. 13 ArsC family protein NP_563278.1 2724730 R 195102 CDS NP_563279.1 18311345 990725 complement(2725258..2727084) 1 NC_003366.1 similar to gpu:AP001511_43 BH1154 gene product from Bacillus halodurans (750 aa); 43.2% identity in 292 aa overlap.Also similar to many two-component sensor histidine kinases. 4 transmembrane regions were found by PSORT.; two-component sensor histidine kinase 2727084 990725 CPE2363 Clostridium perfringens str. 13 two-component sensor histidine kinase NP_563279.1 2725258 R 195102 CDS NP_563280.1 18311346 990726 complement(2727062..2727760) 1 NC_003366.1 similar to gpu:AP001511_42 two-component response regulator from Bacillus halodurans (232 aa); 62.6% identity in 227 aa overlap; DNA-binding response regulator 2727760 990726 CPE2364 Clostridium perfringens str. 13 DNA-binding response regulator NP_563280.1 2727062 R 195102 CDS NP_563281.1 18311347 990727 2728014..2728871 1 NC_003366.1 similar to gpu:AP001519_119 BH3604 gene product from Bacillus halodurans (293 aa); 36.6% identity in 273 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 2728871 990727 CPE2365 Clostridium perfringens str. 13 hypothetical protein NP_563281.1 2728014 D 195102 CDS NP_563282.1 18311348 990728 2728973..2729125 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2729125 990728 CPE2366 Clostridium perfringens str. 13 hypothetical protein NP_563282.1 2728973 D 195102 CDS NP_563283.1 18311349 990729 complement(2729132..2729803) 1 NC_003366.1 similar to gpu:AP001507_239 germination specific N-acetylmuramoyl-L-alanine amidase from Bacillus halodurans (238 aa); 40.6% identity in 197 aa overlap. N-terminal signal sequence was found by PSORT; N-acetylmuramoyl-L-alanine amidase 2729803 990729 CPE2367 Clostridium perfringens str. 13 N-acetylmuramoyl-L-alanine amidase NP_563283.1 2729132 R 195102 CDS NP_563284.1 18311350 990730 complement(2729994..2731607) 1 NC_003366.1 similar to gpu:AP001511_296 BH1407 gene product from Bacillus halodurans (543 aa); 38.6% identity in 502 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein 2731607 990730 CPE2368 Clostridium perfringens str. 13 hypothetical protein NP_563284.1 2729994 R 195102 CDS NP_563285.1 18311351 990731 complement(2731995..2732387) 1 NC_003366.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 2732387 rpsI 990731 rpsI Clostridium perfringens str. 13 30S ribosomal protein S9 NP_563285.1 2731995 R 195102 CDS NP_563286.1 18311352 990732 complement(2732414..2732848) 1 NC_003366.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 2732848 rplM 990732 rplM Clostridium perfringens str. 13 50S ribosomal protein L13 NP_563286.1 2732414 R 195102 CDS NP_563287.1 18311353 990733 complement(2732995..2733729) 1 NC_003366.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2733729 truA 990733 truA Clostridium perfringens str. 13 tRNA pseudouridine synthase A NP_563287.1 2732995 R 195102 CDS NP_563288.1 18311354 990734 complement(2733887..2734693) 1 NC_003366.1 similar to pir:T44414 hypothetical protein ybaF from Bacillus halodurans (265 aa); 40.7% identity in 248 aa overlap. 6 transmembrane regions were found by PSORT.; hypothetical protein 2734693 990734 CPE2372 Clostridium perfringens str. 13 hypothetical protein NP_563288.1 2733887 R 195102 CDS NP_563289.1 18311355 990735 complement(2734709..2735566) 1 NC_003366.1 with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 2735566 cbiO 990735 cbiO Clostridium perfringens str. 13 cobalt transporter ATP-binding subunit NP_563289.1 2734709 R 195102 CDS NP_563290.1 18311356 990736 complement(2735551..2736396) 1 NC_003366.1 with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 2736396 990736 CPE2374 Clostridium perfringens str. 13 cobalt transporter ATP-binding subunit NP_563290.1 2735551 R 195102 CDS NP_563291.1 18311357 990737 complement(2736819..2737160) 1 NC_003366.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 2737160 rplQ 990737 rplQ Clostridium perfringens str. 13 50S ribosomal protein L17 NP_563291.1 2736819 R 195102 CDS NP_563292.1 18311358 3245315 complement(2737177..2738124) 1 NC_003366.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 2738124 rpoA 3245315 rpoA Clostridium perfringens str. 13 DNA-directed RNA polymerase subunit alpha NP_563292.1 2737177 R 195102 CDS NP_563293.1 18311359 990738 complement(2738209..2738829) 1 NC_003366.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 2738829 rpsD 990738 rpsD Clostridium perfringens str. 13 30S ribosomal protein S4 NP_563293.1 2738209 R 195102 CDS NP_563294.1 18311360 990739 complement(2738853..2739248) 1 NC_003366.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 2739248 rpsK 990739 rpsK Clostridium perfringens str. 13 30S ribosomal protein S11 NP_563294.1 2738853 R 195102 CDS NP_563295.1 18311361 990740 complement(2739265..2739630) 1 NC_003366.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 2739630 rpsM 990740 rpsM Clostridium perfringens str. 13 30S ribosomal protein S13 NP_563295.1 2739265 R 195102 CDS NP_563296.1 18311362 990741 complement(2739867..2739980) 1 NC_003366.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 2739980 rpmJ 990741 rpmJ Clostridium perfringens str. 13 50S ribosomal protein L36 NP_563296.1 2739867 R 195102 CDS NP_563297.1 18311363 990742 complement(2739993..2740211) 1 NC_003366.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2740211 infA 990742 infA Clostridium perfringens str. 13 translation initiation factor IF-1 NP_563297.1 2739993 R 195102 CDS NP_563298.1 18311364 990743 complement(2740219..2740527) 1 NC_003366.1 no significant homology; hypothetical protein 2740527 990743 CPE2382 Clostridium perfringens str. 13 hypothetical protein NP_563298.1 2740219 R 195102 CDS NP_563299.1 18311365 990744 complement(2740586..2741335) 1 NC_003366.1 similar to pir:T44405 methionyl aminopeptidase (EC 3.4.11.18) map from Bacillus halodurans (248 aa); 55.7% identity in 246 aa overlap; methionine aminopeptidase 2741335 map 990744 map Clostridium perfringens str. 13 methionine aminopeptidase NP_563299.1 2740586 R 195102 CDS NP_563300.1 18311366 990745 complement(2741335..2741991) 1 NC_003366.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2741991 adk 990745 adk Clostridium perfringens str. 13 adenylate kinase NP_563300.1 2741335 R 195102 CDS NP_563301.1 18311367 990746 complement(2742012..2743289) 1 NC_003366.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 2743289 secY 990746 secY Clostridium perfringens str. 13 preprotein translocase subunit SecY NP_563301.1 2742012 R 195102 CDS NP_563302.1 18311368 990747 complement(2743292..2743732) 1 NC_003366.1 late assembly protein; 50S ribosomal protein L15 2743732 rplO 990747 rplO Clostridium perfringens str. 13 50S ribosomal protein L15 NP_563302.1 2743292 R 195102 CDS NP_563303.1 18311369 990748 complement(2743766..2743939) 1 NC_003366.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 2743939 rpmD 990748 rpmD Clostridium perfringens str. 13 50S ribosomal protein L30 NP_563303.1 2743766 R 195102 CDS NP_563304.1 18311370 990749 complement(2743951..2744448) 1 NC_003366.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 2744448 rpsE 990749 rpsE Clostridium perfringens str. 13 30S ribosomal protein S5 NP_563304.1 2743951 R 195102 CDS NP_563305.1 18311371 990750 complement(2744469..2744828) 1 NC_003366.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 2744828 rplR 990750 rplR Clostridium perfringens str. 13 50S ribosomal protein L18 NP_563305.1 2744469 R 195102 CDS NP_563306.1 18311372 990751 complement(2744859..2745398) 1 NC_003366.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 2745398 rplF 990751 rplF Clostridium perfringens str. 13 50S ribosomal protein L6 NP_563306.1 2744859 R 195102 CDS NP_563307.1 18311373 990752 complement(2745495..2745893) 1 NC_003366.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 2745893 rpsH 990752 rpsH Clostridium perfringens str. 13 30S ribosomal protein S8 NP_563307.1 2745495 R 195102 CDS NP_563308.1 18311374 990753 complement(2745927..2746112) 1 NC_003366.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 2746112 rpsN 990753 rpsN Clostridium perfringens str. 13 30S ribosomal protein S14 NP_563308.1 2745927 R 195102 CDS NP_563309.1 18311375 990754 complement(2746129..2746668) 1 NC_003366.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 2746668 rplE 990754 rplE Clostridium perfringens str. 13 50S ribosomal protein L5 NP_563309.1 2746129 R 195102 CDS NP_563310.1 18311376 990755 complement(2746691..2747005) 1 NC_003366.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 2747005 rplX 990755 rplX Clostridium perfringens str. 13 50S ribosomal protein L24 NP_563310.1 2746691 R 195102 CDS NP_563311.1 18311377 990756 complement(2747029..2747397) 1 NC_003366.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 2747397 rplN 990756 rplN Clostridium perfringens str. 13 50S ribosomal protein L14 NP_563311.1 2747029 R 195102 CDS NP_563312.1 18311378 990757 complement(2747428..2747682) 1 NC_003366.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 2747682 rpsQ 990757 rpsQ Clostridium perfringens str. 13 30S ribosomal protein S17 NP_563312.1 2747428 R 195102 CDS NP_563313.1 18311379 990758 complement(2747704..2747913) 1 NC_003366.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 2747913 rpmC 990758 rpmC Clostridium perfringens str. 13 50S ribosomal protein L29 NP_563313.1 2747704 R 195102 CDS NP_563314.1 18311380 990759 complement(2747913..2748347) 1 NC_003366.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 2748347 rplP 990759 rplP Clostridium perfringens str. 13 50S ribosomal protein L16 NP_563314.1 2747913 R 195102 CDS NP_563315.1 18311381 990760 complement(2748378..2749046) 1 NC_003366.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 2749046 rpsC 990760 rpsC Clostridium perfringens str. 13 30S ribosomal protein S3 NP_563315.1 2748378 R 195102 CDS NP_563316.1 18311382 990761 complement(2749067..2749402) 1 NC_003366.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 2749402 rplV 990761 rplV Clostridium perfringens str. 13 50S ribosomal protein L22 NP_563316.1 2749067 R 195102 CDS NP_563317.1 18311383 990762 complement(2749430..2749711) 1 NC_003366.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 2749711 rpsS 990762 rpsS Clostridium perfringens str. 13 30S ribosomal protein S19 NP_563317.1 2749430 R 195102 CDS NP_563318.1 18311384 990763 complement(2749782..2750615) 1 NC_003366.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 2750615 rplB 990763 rplB Clostridium perfringens str. 13 50S ribosomal protein L2 NP_563318.1 2749782 R 195102 CDS NP_563319.1 18311385 990764 complement(2750670..2750963) 1 NC_003366.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 2750963 rplW 990764 rplW Clostridium perfringens str. 13 50S ribosomal protein L23 NP_563319.1 2750670 R 195102 CDS NP_563320.1 18311386 990765 complement(2751051..2751578) 1 NC_003366.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 2751578 rplD 990765 rplD Clostridium perfringens str. 13 50S ribosomal protein L4 NP_563320.1 2751051 R 195102 CDS NP_563321.2 161485641 990766 complement(2751603..2752232) 1 NC_003366.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 2752232 rplC 990766 rplC Clostridium perfringens str. 13 50S ribosomal protein L3 NP_563321.2 2751603 R 195102 CDS NP_563322.1 18311388 990767 complement(2752315..2752623) 1 NC_003366.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 2752623 rpsJ 990767 rpsJ Clostridium perfringens str. 13 30S ribosomal protein S10 NP_563322.1 2752315 R 195102 CDS NP_563323.1 18311389 990768 complement(2753318..2754511) 1 NC_003366.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 2754511 tuf 990768 tuf Clostridium perfringens str. 13 elongation factor Tu NP_563323.1 2753318 R 195102 CDS NP_563324.1 18311390 990769 complement(2754585..2756651) 1 NC_003366.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2756651 fus 990769 fus Clostridium perfringens str. 13 elongation factor G NP_563324.1 2754585 R 195102 CDS NP_563325.1 18311391 990770 complement(2756732..2757202) 1 NC_003366.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 2757202 rpsG 990770 rpsG Clostridium perfringens str. 13 30S ribosomal protein S7 NP_563325.1 2756732 R 195102 CDS NP_563326.1 18311392 990771 complement(2757362..2757742) 1 NC_003366.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 2757742 rpsL 990771 rpsL Clostridium perfringens str. 13 30S ribosomal protein S12 NP_563326.1 2757362 R 195102 CDS NP_563327.1 18311393 990772 complement(2757800..2758066) 1 NC_003366.1 similar to pir:G69751 ribosomal protein L7AE family homolog ybxF from Bacillus subtilis (82 aa); 47.8% identity in 69 aa overlap; ribosomal protein L7AE family protein 2758066 990772 CPE2411 Clostridium perfringens str. 13 ribosomal protein L7AE family protein NP_563327.1 2757800 R 195102 CDS NP_563328.1 18311394 990773 complement(2758152..2761688) 1 NC_003366.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 2761688 rpoC 990773 rpoC Clostridium perfringens str. 13 DNA-directed RNA polymerase subunit beta' NP_563328.1 2758152 R 195102 CDS NP_563329.1 18311395 990774 complement(2761768..2765472) 1 NC_003366.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 2765472 rpoB 990774 rpoB Clostridium perfringens str. 13 DNA-directed RNA polymerase subunit beta NP_563329.1 2761768 R 195102 CDS NP_563330.1 18311396 990775 complement(2765777..2766142) 1 NC_003366.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 2766142 rplL 990775 rplL Clostridium perfringens str. 13 50S ribosomal protein L7/L12 NP_563330.1 2765777 R 195102 CDS NP_563331.2 161485640 990776 complement(2766197..2766697) 1 NC_003366.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 2766697 rplJ 990776 rplJ Clostridium perfringens str. 13 50S ribosomal protein L10 NP_563331.2 2766197 R 195102 CDS NP_563332.1 18311398 990777 complement(2766914..2767603) 1 NC_003366.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 2767603 rplA 990777 rplA Clostridium perfringens str. 13 50S ribosomal protein L1 NP_563332.1 2766914 R 195102 CDS NP_563333.1 18311399 990778 complement(2767661..2768086) 1 NC_003366.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 2768086 rplK 990778 rplK Clostridium perfringens str. 13 50S ribosomal protein L11 NP_563333.1 2767661 R 195102 CDS NP_563334.1 18311400 990779 complement(2768161..2768682) 1 NC_003366.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 2768682 nusG 990779 nusG Clostridium perfringens str. 13 transcription antitermination protein NusG NP_563334.1 2768161 R 195102 CDS NP_563335.1 18311401 990780 complement(2768720..2768944) 1 NC_003366.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 2768944 secE 990780 secE Clostridium perfringens str. 13 preprotein translocase subunit SecE NP_563335.1 2768720 R 195102 CDS NP_563336.1 18311402 990781 complement(2768998..2769147) 1 NC_003366.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 2769147 rpmG 990781 rpmG Clostridium perfringens str. 13 50S ribosomal protein L33 NP_563336.1 2768998 R 195102 CDS NP_563337.1 18311403 990782 complement(2769330..2770523) 1 NC_003366.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 2770523 tuf 990782 tuf Clostridium perfringens str. 13 elongation factor Tu NP_563337.1 2769330 R 195102 CDS NP_563338.1 18311404 990784 complement(2770748..2771395) 1 NC_003366.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 2771395 sigH 990784 sigH Clostridium perfringens str. 13 RNA polymerase factor sigma-70 NP_563338.1 2770748 R 195102 CDS NP_563339.1 18311405 990785 complement(2771477..2771986) 1 NC_003366.1 similar to gpu:AP001507_114 BH0114 gene product from Bacillus halodurans (170 aa); 41.3% identity in 167 aa overlap; hypothetical protein 2771986 990785 CPE2423 Clostridium perfringens str. 13 hypothetical protein NP_563339.1 2771477 R 195102 CDS NP_563340.1 18311406 990786 complement(2772002..2772871) 1 NC_003366.1 similar to sp:YACO_BACSU HYPOTHETICAL TRNA/RRNA METHYLTRANSFERASE YACO (EC 2.1.1.-) from Bacillus subtilis (249 aa); 50.4% identity in 242 aa overlap; TrmH family RNA methyltransferase 2772871 990786 CPE2424 Clostridium perfringens str. 13 TrmH family RNA methyltransferase NP_563340.1 2772002 R 195102 CDS NP_563341.1 18311407 990787 complement(2772894..2773631) 1 NC_003366.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 2773631 thyX 990787 thyX Clostridium perfringens str. 13 FAD-dependent thymidylate synthase NP_563341.1 2772894 R 195102 CDS NP_563342.1 18311408 990788 complement(2773647..2774057) 1 NC_003366.1 similar to gpu:AP001507_112 BH0112 gene product from Bacillus halodurans (139 aa); 50% identity in 114 aa overlap; hypothetical protein 2774057 990788 CPE2426 Clostridium perfringens str. 13 hypothetical protein NP_563342.1 2773647 R 195102 CDS NP_563343.1 18311409 990789 complement(2774285..2775685) 1 NC_003366.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2775685 cysS 990789 cysS Clostridium perfringens str. 13 cysteinyl-tRNA synthetase NP_563343.1 2774285 R 195102 CDS NP_563344.1 18311410 990790 complement(2775790..2777502) 1 NC_003366.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 2777502 proS 990790 proS Clostridium perfringens str. 13 prolyl-tRNA synthetase NP_563344.1 2775790 R 195102 CDS NP_563345.1 18311411 990791 complement(2777857..2778534) 1 NC_003366.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2778534 ispD 990791 ispD Clostridium perfringens str. 13 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NP_563345.1 2777857 R 195102 CDS NP_563346.1 18311412 990792 complement(2778548..2779654) 1 NC_003366.1 similar to gpu:AP001507_106 BH0106 gene product from Bacillus halodurans (362 aa); 47.7% identity in 367 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; PIN/TRAM domain-containing protein 2779654 990792 CPE2430 Clostridium perfringens str. 13 PIN/TRAM domain-containing protein NP_563346.1 2778548 R 195102 CDS NP_563347.1 18311413 990793 2779966..2780367 1 NC_003366.1 no significant homology; hypothetical protein 2780367 990793 CPE2431 Clostridium perfringens str. 13 hypothetical protein NP_563347.1 2779966 D 195102 CDS NP_563348.1 18311414 990794 complement(2780401..2781465) 1 NC_003366.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA 2781465 990794 CPE2432 Clostridium perfringens str. 13 DNA integrity scanning protein DisA NP_563348.1 2780401 R 195102 CDS NP_563349.1 18311415 990795 complement(2781485..2782846) 1 NC_003366.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 2782846 radA 990795 radA Clostridium perfringens str. 13 DNA repair protein RadA NP_563349.1 2781485 R 195102 CDS NP_563350.1 18311416 990796 complement(2783097..2783825) 1 NC_003366.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 2783825 nagB 990796 nagB Clostridium perfringens str. 13 glucosamine-6-phosphate deaminase NP_563350.1 2783097 R 195102 CDS NP_563351.1 18311417 990797 complement(2783822..2784544) 1 NC_003366.1 similar to pir:D70044 transcription regulator GntR family homolog yvoA from Bacillus subtilis (243 aa); 37.3% identity in 225 aa overlap; GntR family; GntR family transcriptional regulator 2784544 990797 CPE2435 Clostridium perfringens str. 13 GntR family transcriptional regulator NP_563351.1 2783822 R 195102 CDS NP_563352.1 18311418 990798 2784744..2784908 1 NC_003366.1 no significant homology; hypothetical protein 2784908 990798 CPE2436 Clostridium perfringens str. 13 hypothetical protein NP_563352.1 2784744 D 195102 CDS NP_563353.1 18311419 990799 2785002..2785229 1 NC_003366.1 similar to sp:YRUB_CLOPA HYPOTHETICAL GLUTAREDOXIN-LIKE 8.6 KDA PROTEIN IN RUBREDOXIN OPERON (ORF B) from Clostridium pasteurianum (75 aa); 58.7% identity in 75 aa overlap; glutaredoxin 2785229 990799 CPE2437 Clostridium perfringens str. 13 glutaredoxin NP_563353.1 2785002 D 195102 CDS NP_563354.1 18311420 990800 complement(2785352..2786800) 1 NC_003366.1 similar to sp:GAPN_STRMU NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (EC 1.2.1.9) (NON-PHOSPHORYLATING GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE) (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE [NADP+]) (TRIOSEPHOSPHATE DEHYDROGENASE) from Streptococcus mutans (475 aa); 57.1% identity in 475 aa overlap; NADP-dependent glyceraldehyde-3-phosphate dehydrogenas 2786800 gapN 990800 gapN Clostridium perfringens str. 13 NADP-dependent glyceraldehyde-3-phosphate dehydrogenas NP_563354.1 2785352 R 195102 CDS NP_563355.1 18311421 990801 complement(2786817..2787050) 1 NC_003366.1 similar to sp:YRUB_CLOPA HYPOTHETICAL GLUTAREDOXIN-LIKE 8.6 KDA PROTEIN IN RUBREDOXIN OPERON (ORF B) from Clostridium pasteurianum (75 aa); 41.3% identity in 75 aa overlap; glutaredoxin 2787050 990801 CPE2439 Clostridium perfringens str. 13 glutaredoxin NP_563355.1 2786817 R 195102 CDS NP_563356.1 18311422 990802 complement(2787053..2787991) 1 NC_003366.1 similar to sp:R34K_CLOPA 34.2 KDA PROTEIN IN RUBREDOXIN OPERON (EC 1.6.4.-) (ORF A) from Clostridium pasteurianum (308 aa); 51.3% identity in 304 aa overlap. N-terminal signal sequence was found by PSORT; thioredoxin-disulfide reductase 2787991 990802 CPE2440 Clostridium perfringens str. 13 thioredoxin-disulfide reductase NP_563356.1 2787053 R 195102 CDS NP_563357.1 18311423 990803 complement(2788268..2790712) 1 NC_003366.1 similar to sp:CLPC_BACSU NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC/MECB from Bacillus subtilis (810 aa); 53.1% identity in 813 aa overlap; negative regulator of genetic competence MecB/ClpC 2790712 clpC 990803 clpC Clostridium perfringens str. 13 negative regulator of genetic competence MecB/ClpC NP_563357.1 2788268 R 195102 CDS NP_563358.1 18311424 990804 complement(2790737..2791750) 1 NC_003366.1 similar to sp:YACI_BACSU HYPOTHETICAL 41.1 KDA PROTEIN IN LYSS-MECB INTERGENIC REGION (ORFX) from Bacillus subtilis (363 aa); 33.8% identity in 328 aa overlap; ATP:guanido phosphotransferase 2791750 990804 CPE2442 Clostridium perfringens str. 13 ATP:guanido phosphotransferase NP_563358.1 2790737 R 195102 CDS NP_563359.1 18311425 990805 complement(2791734..2792333) 1 NC_003366.1 similar to gp:LMU40604_2 Listeria monocytogenes ClpC ATPase (mec) gene, complete cds from Listeria monocytogenes (174 aa); 34% identity in 162 aa overlap; hypothetical protein 2792333 990805 CPE2443 Clostridium perfringens str. 13 hypothetical protein NP_563359.1 2791734 R 195102 CDS NP_563360.1 18311426 990806 complement(2792281..2792736) 1 NC_003366.1 similar to gp:AB031211_4 CtsR from Bacillus halodurans (156 aa); 38.3% identity in 149 aa overlap; transcriptional repressor 2792736 ctsR 990806 ctsR Clostridium perfringens str. 13 transcriptional repressor NP_563360.1 2792281 R 195102 CDS NP_563361.1 18311427 990807 2792953..2793606 1 NC_003366.1 similar to pir:A72406 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (208 aa); 41.9% identity in 179 aa overlap; hypothetical protein 2793606 990807 CPE2445 Clostridium perfringens str. 13 hypothetical protein NP_563361.1 2792953 D 195102 CDS NP_563362.1 18311428 990808 complement(2793657..2795318) 1 NC_003366.1 partially similar to sp:CPHA_ANAVA CYANOPHYCIN SYNTHETASE (EC 6.-.-.-) from Anabaena variabilis (901 aa); 34.6% identity in 338 aa overlap; hypothetical protein 2795318 990808 CPE2446 Clostridium perfringens str. 13 hypothetical protein NP_563362.1 2793657 R 195102 CDS NP_563363.1 18311429 990809 complement(2795456..2795626) 1 NC_003366.1 similar to sp:FER_CLOPE FERREDOXIN from Clostridium perfringens (55 aa); 100% identity in 55 aa overlap; ferredoxin 2795626 fer 990809 fer Clostridium perfringens str. 13 ferredoxin NP_563363.1 2795456 R 195102 CDS NP_563364.1 18311430 990810 complement(2795795..2796700) 1 NC_003366.1 similar to gpu:AP001507_45 signal peptidase-like protein from Bacillus halodurans (275 aa); 59.8% identity in 249 aa overlap; PSP1 domain-containing protein 2796700 990810 CPE2448 Clostridium perfringens str. 13 PSP1 domain-containing protein NP_563364.1 2795795 R 195102 CDS NP_563365.1 18311431 990811 complement(2796703..2797626) 1 NC_003366.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 2797626 holB 990811 holB Clostridium perfringens str. 13 DNA polymerase III subunit delta' NP_563365.1 2796703 R 195102 CDS NP_563366.1 18311432 990812 complement(2797648..2797977) 1 NC_003366.1 similar to gp:TT11467_4 hypothetical 12.0kD protein from Thermus thermophilu (109 aa); 42.2% identity in 109 aa overlap; hypothetical protein 2797977 990812 CPE2450 Clostridium perfringens str. 13 hypothetical protein NP_563366.1 2797648 R 195102 CDS NP_563367.1 18311433 990813 complement(2798134..2798289) 1 NC_003366.1 no significant homology N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 2798289 990813 CPE2451 Clostridium perfringens str. 13 hypothetical protein NP_563367.1 2798134 R 195102 CDS NP_563368.1 18311434 990814 complement(2798306..2798896) 1 NC_003366.1 similar to prf:2407216B ORF from Bacillus natto (182 aa); 30.4% identity in 158 aa overlap; guanylate kinase 2798896 gmk 990814 gmk Clostridium perfringens str. 13 guanylate kinase NP_563368.1 2798306 R 195102 CDS NP_563369.1 18311435 990815 complement(2799143..2800573) 1 NC_003366.1 similar to sp:YAAO_BACSU HYPOTHETICAL 53.2 KDA PROTEIN IN XPAC-ABRB INTERGENIC REGION from Bacillus subtilis (480 aa); 33.3% identity in 451 aa overlap; Orn/Lys/Arg decarboxylase 2800573 990815 CPE2453 Clostridium perfringens str. 13 Orn/Lys/Arg decarboxylase NP_563369.1 2799143 R 195102 CDS NP_563370.1 18311436 990816 complement(2800591..2800767) 1 NC_003366.1 similar to sp:CSFB_BACSU CSFB PROTEIN from Bacillus subtilis (64 aa); 43.2% identity in 44 aa overlap; csfB protein 2800767 csfB 990816 csfB Clostridium perfringens str. 13 csfB protein NP_563370.1 2800591 R 195102 CDS NP_563371.1 18311437 990817 2800923..2802092 1 NC_003366.1 partially similar to pir:D64883 hypothetical protein b1337 from Escherichia coli (481 aa); 31.8% identity in 245 aa overlap; amidohydrolase 2802092 990817 CPE2455 Clostridium perfringens str. 13 amidohydrolase NP_563371.1 2800923 D 195102 CDS NP_563372.1 18311438 990818 complement(2802121..2802618) 1 NC_003366.1 no significant homology N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 2802618 990818 CPE2456 Clostridium perfringens str. 13 hypothetical protein NP_563372.1 2802121 R 195102 CDS NP_563373.1 18311439 990819 2802893..2803837 1 NC_003366.1 similar to pir:A75272 probable transport protein from Deinococcus radiodurans (strain R1) (312 aa); 42.7% identity in 314 aa overlap. 2 transmembrane regions were found by PSORT.; transporter 2803837 990819 CPE2457 Clostridium perfringens str. 13 transporter NP_563373.1 2802893 D 195102 CDS NP_563374.1 18311440 990820 2803902..2804810 1 NC_003366.1 similar to sp:YKFA_BACSU HYPOTHETICAL 25.4 KDA PROTEIN IN DPPE-HMP INTERGENIC REGION from Bacillus subtilis (234 aa); 40.3% identity in 211 aa overlap; hypothetical protein 2804810 990820 CPE2458 Clostridium perfringens str. 13 hypothetical protein NP_563374.1 2803902 D 195102 CDS NP_563375.1 18311441 990829 complement(2812125..2813501) 1 NC_003366.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 2813501 murD 990829 murD Clostridium perfringens str. 13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase NP_563375.1 2812125 R 195102 CDS NP_563376.1 18311442 990830 2813812..2814855 1 NC_003366.1 catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 2814855 bioB 990830 bioB Clostridium perfringens str. 13 biotin synthase NP_563376.1 2813812 D 195102 CDS NP_563377.1 18311443 990831 complement(2815098..2816339) 1 NC_003366.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 2816339 990831 CPE2461 Clostridium perfringens str. 13 oxidoreductase NP_563377.1 2815098 R 195102 CDS NP_563378.1 18311444 990832 complement(2816430..2817299) 1 NC_003366.1 similar to pir:E71292 probable immunity protein (mccF) from Treponema pallidum (337 aa); 31.6% identity in 285 aa overlap; LD-carboxypeptidase 2817299 mccF 990832 mccF Clostridium perfringens str. 13 LD-carboxypeptidase NP_563378.1 2816430 R 195102 CDS NP_563379.1 18311445 990833 complement(2817473..2818591) 1 NC_003366.1 similar to gpu:AE004214_3 peptidase, M20A family from Vibrio cholerae (368 aa); 44.8% identity in 362 aa overlap; peptidase 2818591 pepT 990833 pepT Clostridium perfringens str. 13 peptidase NP_563379.1 2817473 R 195102 CDS NP_563380.1 18311446 990834 complement(2818777..2820180) 1 NC_003366.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 2820180 glyS 990834 glyS Clostridium perfringens str. 13 glycyl-tRNA synthetase NP_563380.1 2818777 R 195102 CDS NP_563381.1 18311447 990836 complement(2820866..2822371) 1 NC_003366.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 2822371 lysS 990836 lysS Clostridium perfringens str. 13 lysyl-tRNA synthetase NP_563381.1 2820866 R 195102 CDS NP_563382.1 18311448 990837 complement(2822397..2822873) 1 NC_003366.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 2822873 greA 990837 greA Clostridium perfringens str. 13 transcription elongation factor GreA NP_563382.1 2822397 R 195102 CDS NP_563383.1 18311449 990838 complement(2823152..2824132) 1 NC_003366.1 similar to gpu:AP001507_97 transcriptional regulator involved in nitrogen regulation (NifR3/Smm1 family) from Bacillus halodurans (334 aa); 46.7% identity in 321 aa overlap; NifR3/Smm1 family; dihydrouridine synthase 2824132 990838 CPE2467 Clostridium perfringens str. 13 dihydrouridine synthase NP_563383.1 2823152 R 195102 CDS NP_563384.1 18311450 990839 complement(2824139..2824918) 1 NC_003366.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 2824918 990839 CPE2468 Clostridium perfringens str. 13 pantothenate kinase NP_563384.1 2824139 R 195102 CDS NP_563385.1 18311451 990840 complement(2825121..2826791) 1 NC_003366.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 2826791 990840 CPE2469 Clostridium perfringens str. 13 formate--tetrahydrofolate ligase NP_563385.1 2825121 R 195102 CDS NP_563386.1 18311452 990841 complement(2826993..2828798) 1 NC_003366.1 similar to pir:T31466 cell-division protein homolog ftsH from Heliobacillus mobilis (601 aa); 52% identity in 596 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; ATP-dependent metalloprotease FtsH 2828798 ftsH 990841 ftsH Clostridium perfringens str. 13 ATP-dependent metalloprotease FtsH NP_563386.1 2826993 R 195102 CDS NP_563387.1 18311453 990842 complement(2828873..2829424) 1 NC_003366.1 similar to sp:HPRT_BACSU HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE (EC 2.4.2.8) (HGPRT) (HGPRTASE) from Bacillus subtilis (180 aa); 53.7% identity in 177 aa overlap. 1 transmembrane region was found by PSORT; hypoxanthine phosphoribosyltransferase 2829424 hprT 990842 hprT Clostridium perfringens str. 13 hypoxanthine phosphoribosyltransferase NP_563387.1 2828873 R 195102 CDS NP_563388.1 18311454 990843 complement(2829427..2830836) 1 NC_003366.1 similar to pir:S66097 cell-cycle protein homolog yacA from Bacillus subtilis (486 aa); 30.4% identity in 441 aa overlap; tRNA(Ile)-lysidine synthetase 2830836 990843 CPE2472 Clostridium perfringens str. 13 tRNA(Ile)-lysidine synthetase NP_563388.1 2829427 R 195102 CDS NP_563389.1 18311455 990844 complement(2831053..2833443) 1 NC_003366.1 similar to gpu:AP001507_78 stage II sporulation protein E from Bacillus halodurans (830 aa); 23.9% identity in 762 aa overlap. 11 transmembrane regions were found by PSORT.; stage II sprulation protein E 2833443 spoIIE 990844 spoIIE Clostridium perfringens str. 13 stage II sprulation protein E NP_563389.1 2831053 R 195102 CDS NP_563390.1 18311456 990852 complement(2834751..2835155) 1 NC_003366.1 similar to sp:YABR_BACSU HYPOTHETICAL 14.2 KDA PROTEIN IN DIVIC-SPOIIE INTERGENIC REGION from Bacillus subtilis (128 aa); 45% identity in 131 aa overlap; hypothetical protein 2835155 990852 CPE2474 Clostridium perfringens str. 13 hypothetical protein NP_563390.1 2834751 R 195102 CDS NP_563391.1 18311457 990853 complement(2835215..2835607) 1 NC_003366.1 similar to gp:AF023181_4 DivIC homolog from Listeria monocytogenes (128 aa); 31.1% identity in 74 aa overlap. 1 transmembrane region was found by PSORT; hypothetical protein 2835607 990853 CPE2475 Clostridium perfringens str. 13 hypothetical protein NP_563391.1 2835215 R 195102 CDS NP_563392.1 18311458 990854 complement(2835631..2836005) 1 NC_003366.1 similar to sp:YABQ_BACSU HYPOTHETICAL 25.1 KDA PROTEIN IN MFD-DIVIC INTERGENIC REGION from Bacillus subtilis (211 aa); 30.6% identity in 121 aa overlap. N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 2836005 990854 CPE2476 Clostridium perfringens str. 13 hypothetical protein NP_563392.1 2835631 R 195102 CDS NP_563393.1 18311459 990855 complement(2836015..2836314) 1 NC_003366.1 similar to gpu:AP001507_74 BH0074 gene product from Bacillus halodurans (103 aa); 43.8% identity in 64 aa overlap; sporulation protein YabP 2836314 990855 CPE2477 Clostridium perfringens str. 13 sporulation protein YabP NP_563393.1 2836015 R 195102 CDS NP_563394.1 18311460 990856 complement(2836445..2836705) 1 NC_003366.1 similar to gp:AF023181_3 unknown protein from Listeria monocytogenes (92 aa); 52.3% identity in 86 aa overlap; S4 domain-containing protein 2836705 990856 CPE2478 Clostridium perfringens str. 13 S4 domain-containing protein NP_563394.1 2836445 R 195102 CDS NP_563395.1 18311461 990857 complement(2836813..2837088) 1 NC_003366.1 similar to sp:DBH_CLOPA DNA-BINDING PROTEIN H from Clostridium pasteurianum (91 aa); 81.1% identity in 90 aa overlap; DNA-binding protein HU 2837088 dbh 990857 dbh Clostridium perfringens str. 13 DNA-binding protein HU NP_563395.1 2836813 R 195102 CDS NP_563396.1 18311462 990858 complement(2837305..2838756) 1 NC_003366.1 similar to sp:YABN_BACSU HYPOTHETICAL 56.1 KDA PROTEIN IN MFD-DIVIC INTERGENIC REGION from Bacillus subtilis (489 aa); 47.7% identity in 484 aa overlap; nucleotide pyrophosphohydrolase 2838756 990858 CPE2480 Clostridium perfringens str. 13 nucleotide pyrophosphohydrolase NP_563396.1 2837305 R 195102 CDS NP_563397.1 18311463 990859 complement(2838786..2840318) 1 NC_003366.1 similar to sp:SP5B_BACSU STAGE V SPORULATION PROTEIN B from Bacillus subtilis (518 aa); 27.7% identity in 505 aa overlap. N-terminal signal sequence and 11 transmembrane regions were found by PSORT.; stage V sporulation protein B 2840318 spoVB 990859 spoVB Clostridium perfringens str. 13 stage V sporulation protein B NP_563397.1 2838786 R 195102 CDS NP_563398.1 18311464 990860 complement(2840498..2841046) 1 NC_003366.1 similar to gpu:AP001507_70 stage V sporulation protein T from Bacillus haloduran (179 aa); 63.7% identity in 182 aa overlap. 1 transmembrane region was found by PSORT; stage V sprulation protein T 2841046 990860 CPE2482 Clostridium perfringens str. 13 stage V sprulation protein T NP_563398.1 2840498 R 195102 CDS NP_563399.1 18311465 990861 complement(2841241..2842269) 1 NC_003366.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidyl-prolyl isomerase 2842269 prsA 990861 prsA Clostridium perfringens str. 13 peptidyl-prolyl isomerase NP_563399.1 2841241 R 195102 CDS NP_563400.1 18311466 990862 complement(2842370..2845858) 1 NC_003366.1 similar to sp:MFD_BACSU TRANSCRIPTION-REPAIR COUPLING FACTOR (TRCF) from Bacillus subtili (1177 aa); 48.4% identity in 1078 aa overlap; transcription-repair coupling factor 2845858 mfd 990862 mfd Clostridium perfringens str. 13 transcription-repair coupling factor NP_563400.1 2842370 R 195102 CDS NP_563401.1 18311467 990863 complement(2845907..2846473) 1 NC_003366.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 2846473 spoVC 990863 spoVC Clostridium perfringens str. 13 peptidyl-tRNA hydrolase NP_563401.1 2845907 R 195102 CDS NP_563402.1 18311468 990864 complement(2846599..2847756) 1 NC_003366.1 similar to sp:HTRA_CHLTR PROBABLE SERINE PROTEASE DO-LIKE PRECURSOR (EC 3.4.21.-) (59 KDA IMMUNOGENIC PROTEIN) (SK59) from Chlamydia trachomatis (serotype D, strain UW3/Cx) (497 aa); 31.8% identity in 274 aa overlap. 1 transmembrane region was found by PSORT; proteinase Do; PDZ domain-containing protein 2847756 990864 CPE2486 Clostridium perfringens str. 13 PDZ domain-containing protein NP_563402.1 2846599 R 195102 CDS NP_563403.1 18311469 990865 complement(2847777..2849186) 1 NC_003366.1 similar to pir:H69762 two-component sensor histidine kinase homolog yclK from Bacillus subtilis (473 aa); 28.2% identity in 451 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; two-component sensor histidine kinase 2849186 990865 CPE2487 Clostridium perfringens str. 13 two-component sensor histidine kinase NP_563403.1 2847777 R 195102 CDS NP_563404.1 18311470 990866 complement(2849186..2849872) 1 NC_003366.1 similar to gpu:AP001512_167 two-component response regulator from Bacillus halodurans (238 aa); 51.6% identity in 221 aa overlap; DNA-binding response regulator 2849872 990866 CPE2488 Clostridium perfringens str. 13 DNA-binding response regulator NP_563404.1 2849186 R 195102 CDS NP_563405.1 18311471 990867 complement(2850143..2851102) 1 NC_003366.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 2851102 prs 990867 prs Clostridium perfringens str. 13 ribose-phosphate pyrophosphokinase NP_563405.1 2850143 R 195102 CDS NP_563406.1 18311472 990868 complement(2851159..2852523) 1 NC_003366.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 2852523 glmU 990868 glmU Clostridium perfringens str. 13 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase NP_563406.1 2851159 R 195102 CDS NP_563407.1 18311473 990869 complement(2852733..2853005) 1 NC_003366.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 2853005 spoVG 990869 spoVG Clostridium perfringens str. 13 regulatory protein SpoVG NP_563407.1 2852733 R 195102 CDS NP_563408.1 18311474 990870 complement(2853116..2853919) 1 NC_003366.1 similar to gpu:AP001507_62 transcriptional repressor of the purine operon from Bacillus halodurans (282 aa); 42.6% identity in 258 aa overlap; pur operon repressor 2853919 purR 990870 purR Clostridium perfringens str. 13 pur operon repressor NP_563408.1 2853116 R 195102 CDS NP_563409.2 161485639 990871 2854253..2855653 1 NC_003366.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 2855653 murC 990871 murC Clostridium perfringens str. 13 UDP-N-acetylmuramate--L-alanine ligase NP_563409.2 2854253 D 195102 CDS NP_563410.1 18311476 990872 2855996..2856904 1 NC_003366.1 similar to gpu:AP001515_47 transcriptional regulator from Bacillus halodurans (337 aa); 33.9% identity in 304 aa overlap; LacI family; transcriptional regulator 2856904 990872 CPE2494 Clostridium perfringens str. 13 transcriptional regulator NP_563410.1 2855996 D 195102 CDS NP_563411.1 18311477 990873 2857020..2857838 1 NC_003366.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 2857838 punA 990873 punA Clostridium perfringens str. 13 purine nucleoside phosphorylase NP_563411.1 2857020 D 195102 CDS NP_563412.1 18311478 990874 2857918..2859144 1 NC_003366.1 similar to pir:H82087 NupC family protein VC2352 from Vibrio cholerae (group O1 strain N16961) (418 aa); 43.4% identity in 401 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; nucleoside transporter 2859144 990874 CPE2496 Clostridium perfringens str. 13 nucleoside transporter NP_563412.1 2857918 D 195102 CDS NP_563413.1 18311479 990875 complement(2859220..2860296) 1 NC_003366.1 similar to gpu:AP001518_10 prolidase (proline dipeptidase) from Bacillus halodurans (364 aa); 35.7% identity in 353 aa overlap; metallopeptidase, family M24 2860296 990875 CPE2497 Clostridium perfringens str. 13 metallopeptidase, family M24 NP_563413.1 2859220 R 195102 CDS NP_563414.1 18311480 990876 2860464..2861162 1 NC_003366.1 similar to pir:G72200 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (254 aa); 39% identity in 223 aa overlap; Ser/Thr protein phosphatase 2861162 990876 CPE2498 Clostridium perfringens str. 13 Ser/Thr protein phosphatase NP_563414.1 2860464 D 195102 CDS NP_563415.1 18311481 990877 complement(2861299..2862513) 1 NC_003366.1 no significant homology; heme/steroid binding domain-containing protein 2862513 990877 CPE2499 Clostridium perfringens str. 13 heme/steroid binding domain-containing protein NP_563415.1 2861299 R 195102 CDS NP_563416.1 18311482 990878 2862925..2864322 1 NC_003366.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2864322 asnC 990878 asnC Clostridium perfringens str. 13 asparaginyl-tRNA synthetase NP_563416.1 2862925 D 195102 CDS NP_563417.1 18311483 990879 complement(2864622..2866103) 1 NC_003366.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 2866103 990879 CPE2501 Clostridium perfringens str. 13 leucyl aminopeptidase NP_563417.1 2864622 R 195102 CDS NP_563418.1 18311484 990880 complement(2866252..2866803) 1 NC_003366.1 no significant homology 2 transmembrane regions were found by PSORT.; hypothetical protein 2866803 990880 CPE2502 Clostridium perfringens str. 13 hypothetical protein NP_563418.1 2866252 R 195102 CDS NP_563419.1 18311485 990881 complement(2866933..2867442) 1 NC_003366.1 similar to pir:D69136 anaerobic ribonucleotide reductase activase (EC 1.97.1.-) from Methanobacterium thermoautotrophicum (strain Delta H) (237 aa); 40.1% identity in 157 aa overlap; anaerobic ribonucleoside-triphosphate reductase activating protein 2867442 nrdG 990881 nrdG Clostridium perfringens str. 13 anaerobic ribonucleoside-triphosphate reductase activating protein NP_563419.1 2866933 R 195102 CDS NP_563420.1 18311486 990882 2867551..2868159 1 NC_003366.1 no significant homology; hypothetical protein 2868159 990882 CPE2504 Clostridium perfringens str. 13 hypothetical protein NP_563420.1 2867551 D 195102 CDS NP_563421.1 18311487 990883 complement(2868217..2869608) 1 NC_003366.1 similar to gpu:AE004241_1 conserved hypothetical protein from Vibrio cholerae (458 aa); 30.2% identity in 450 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; MATE efflux family protein 2869608 990883 CPE2505 Clostridium perfringens str. 13 MATE efflux family protein NP_563421.1 2868217 R 195102 CDS NP_563422.1 18311488 990884 complement(2869991..2870989) 1 NC_003366.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 2870989 add 990884 add Clostridium perfringens str. 13 adenosine deaminase NP_563422.1 2869991 R 195102 CDS NP_563423.1 18311489 990885 complement(2871382..2873499) 1 NC_003366.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 2873499 nrdD 990885 nrdD Clostridium perfringens str. 13 anaerobic ribonucleoside triphosphate reductase NP_563423.1 2871382 R 195102 CDS NP_563424.1 18311490 990886 2873759..2874826 1 NC_003366.1 similar to gp:AF011544_5 YecC from Bacillus subtilis (331 aa); 32.4% identity in 281 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2874826 990886 CPE2508 Clostridium perfringens str. 13 hypothetical protein NP_563424.1 2873759 D 195102 CDS NP_563425.1 18311491 990887 2875086..2875931 1 NC_003366.1 similar to prf:2509371A grrY gene:SUBUNIT=selenoprotein B from Eubacterium acidaminophilum (280 aa); 27.1% identity in 277 aa overlap; degV family protein 2875931 990887 CPE2509 Clostridium perfringens str. 13 degV family protein NP_563425.1 2875086 D 195102 CDS NP_563426.1 18311492 990888 2875934..2876374 1 NC_003366.1 partially similar to pir:S78039 hypothetical protein c0114 from Sulfolobus solfataricus (135 aa); 40% identity in 65 aa overlap. 1 transmembrane region was found by PSORT; PadR family transcriptional regulator 2876374 990888 CPE2510 Clostridium perfringens str. 13 PadR family transcriptional regulator NP_563426.1 2875934 D 195102 CDS NP_563427.1 18311493 990889 complement(2876426..2876614) 1 NC_003366.1 3Fe-4S; similar to sp:FER_THELI FERREDOXIN from Thermococcus litoralis (59 aa); 59.7% identity in 62 aa overlap; ferredoxin 2876614 fer 990889 fer Clostridium perfringens str. 13 ferredoxin NP_563427.1 2876426 R 195102 CDS NP_563428.1 18311494 990890 complement(2876762..2877616) 1 NC_003366.1 similar to sp:MRP_CLOPE MRP PROTEIN HOMOLOG (FRAGMENT) from Clostridium perfringens (140 aa); 100% identity in 132 aa overlap; Mrp protein 2877616 990890 CPE2512 Clostridium perfringens str. 13 Mrp protein NP_563428.1 2876762 R 195102 CDS NP_563429.1 18311495 990891 complement(2877637..2878476) 1 NC_003366.1 no significant homology; lipoprotein 2878476 990891 CPE2513 Clostridium perfringens str. 13 lipoprotein NP_563429.1 2877637 R 195102 CDS NP_563430.1 18311496 990892 complement(2878466..2879236) 1 NC_003366.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 2879236 990892 CPE2514 Clostridium perfringens str. 13 prolipoprotein diacylglyceryl transferase NP_563430.1 2878466 R 195102 CDS NP_563431.1 18311497 990893 complement(2879339..2879911) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2879911 990893 CPE2515 Clostridium perfringens str. 13 hypothetical protein NP_563431.1 2879339 R 195102 CDS NP_563432.1 18311498 990894 complement(2880060..2881682) 1 NC_003366.1 no significant homology; hypothetical protein 2881682 990894 CPE2516 Clostridium perfringens str. 13 hypothetical protein NP_563432.1 2880060 R 195102 CDS NP_563433.1 18311499 990895 complement(2881782..2882639) 1 NC_003366.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 2882639 ksgA 990895 ksgA Clostridium perfringens str. 13 dimethyladenosine transferase NP_563433.1 2881782 R 195102 CDS NP_563434.1 18311500 990896 complement(2882651..2883199) 1 NC_003366.1 similar to gpu:AP001507_56 BH0056 gene product from Bacillus halodurans (185 aa); 46.9% identity in 177 aa overlap; primase-like protein 2883199 990896 CPE2518 Clostridium perfringens str. 13 primase-like protein NP_563434.1 2882651 R 195102 CDS NP_563435.1 18311501 990897 complement(2883336..2884358) 1 NC_003366.1 similar to sp:YABE_BACSU HYPOTHETICAL 47.7 KDA PROTEIN IN METS-KSGA INTERGENIC REGION from Bacillus subtilis (437 aa); 36.9% identity in 301 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2884358 990897 CPE2519 Clostridium perfringens str. 13 hypothetical protein NP_563435.1 2883336 R 195102 CDS NP_563436.1 18311502 990898 complement(2884602..2885372) 1 NC_003366.1 similar to sp:YABD_BACSU HYPOTHETICAL 29.2 KDA PROTEIN IN METS-KSGA INTERGENIC REGION from Bacillus subtilis (255 aa); 46.4% identity in 252 aa overlap; TatD family hydrolase 2885372 990898 CPE2520 Clostridium perfringens str. 13 TatD family hydrolase NP_563436.1 2884602 R 195102 CDS NP_563437.1 18311503 990899 complement(2885391..2886890) 1 NC_003366.1 partially similar to pir:B69828 hypothetical protein yheB from Bacillus subtilis (377 aa); 32% identity in 169 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; hypothetical protein 2886890 990899 CPE2521 Clostridium perfringens str. 13 hypothetical protein NP_563437.1 2885391 R 195102 CDS NP_563438.1 18311504 990900 2886992..2887672 1 NC_003366.1 similar to prf:2511460B dnrE gene from Pseudomonas stutzeri (231 aa); 24.5% identity in 220 aa overlap; Crp/Fnr family; cyclic nucleotide-binding protein 2887672 990900 CPE2522 Clostridium perfringens str. 13 cyclic nucleotide-binding protein NP_563438.1 2886992 D 195102 CDS NP_563439.1 18311505 3245313 complement(2887935..2889479) 1 NC_003366.1 similar to sp:SYM_ARCFU METHIONYL-TRNA SYNTHETASE (EC 6.1.1.10) (METHIONINE-TRNA LIGASE) (METRS) from Archaeoglobus fulgidus (658 aa); 35.3% identity in 504 aa overlap; methionyl-tRNA synthetase 2889479 metS 3245313 metS Clostridium perfringens str. 13 methionyl-tRNA synthetase NP_563439.1 2887935 R 195102 CDS NP_563440.1 18311506 990901 complement(2889580..2891517) 1 NC_003366.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2891517 metG 990901 metG Clostridium perfringens str. 13 methionyl-tRNA synthetase NP_563440.1 2889580 R 195102 CDS NP_563441.1 18311507 990902 2892007..2892588 1 NC_003366.1 no significant homology N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 2892588 990902 CPE2525 Clostridium perfringens str. 13 hypothetical protein NP_563441.1 2892007 D 195102 CDS NP_563442.1 18311508 990903 2892610..2893119 1 NC_003366.1 no significant homology 5 transmembrane regions were found by PSORT.; hypothetical protein 2893119 990903 CPE2526 Clostridium perfringens str. 13 hypothetical protein NP_563442.1 2892610 D 195102 CDS NP_563443.1 18311509 990904 complement(2893448..2895163) 1 NC_003366.1 similar to pir:H81355 probable integral membrane protein Cj0832c from Campylobacter jejuni (strain NCTC 11168) (577 aa); 48.8% identity in 551 aa overlap. N-terminal signal sequence and 12 transmembrane regions were found by PSORT.; hypothetical protein 2895163 990904 CPE2527 Clostridium perfringens str. 13 hypothetical protein NP_563443.1 2893448 R 195102 CDS NP_563444.1 18311510 990905 complement(2895589..2897202) 1 NC_003366.1 similar to pir:S38903 hypothetical protein 1 from Clostridium pasteurianum (530 aa); 48.1% identity in 530 aa overlap. 4 transmembrane regions were found by PSORT.; hypothetical protein 2897202 990905 CPE2528 Clostridium perfringens str. 13 hypothetical protein NP_563444.1 2895589 R 195102 CDS NP_563445.1 18311511 990906 complement(2897342..2897680) 1 NC_003366.1 no significant homology; hypothetical protein 2897680 990906 CPE2529 Clostridium perfringens str. 13 hypothetical protein NP_563445.1 2897342 R 195102 CDS NP_563446.1 18311512 990907 complement(2897788..2899032) 1 NC_003366.1 similar to sp:AMPP_ECOLI XAA-PRO AMINOPEPTIDASE (EC 3.4.11.9) (X-PRO AMINOPEPTIDASE) (AMINOPEPTIDASE P II) (APP-II) (AMINOACYLPROLINE AMINOPEPTIDASE) from Escherichia coli (440 aa); 34.5% identity in 406 aa overlap; xaa-pro aminopeptidase 2899032 990907 CPE2530 Clostridium perfringens str. 13 xaa-pro aminopeptidase NP_563446.1 2897788 R 195102 CDS NP_563447.1 18311513 990908 complement(2899180..2901777) 1 NC_003366.1 similar to pir:A49346 aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) / alcohol dehydrogenase (EC 1.1.1.1) E from Clostridium acetobutylicum (862 aa); 67.3% identity in 859 aa overlap. 1 transmembrane region was found by PSORT; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2901777 adhE 990908 adhE Clostridium perfringens str. 13 bifunctional acetaldehyde-CoA/alcohol dehydrogenase NP_563447.1 2899180 R 195102 CDS NP_563448.1 18311514 990909 complement(2902205..2902723) 1 NC_003366.1 similar to gpu:AP001512_162 spore maturation protein from Bacillus halodurans (178 aa); 43.6% identity in 156 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; spore maturation protein B 2902723 spmB 990909 spmB Clostridium perfringens str. 13 spore maturation protein B NP_563448.1 2902205 R 195102 CDS NP_563449.1 18311515 990910 complement(2902735..2903313) 1 NC_003366.1 similar to pir:S74647 spore maturation protein B from Synechocystis sp. (strain PCC 6803) (217 aa); 44.3% identity in 192 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; spore maturation protein A 2903313 spmA 990910 spmA Clostridium perfringens str. 13 spore maturation protein A NP_563449.1 2902735 R 195102 CDS NP_563450.1 18311516 990911 2903428..2903607 1 NC_003366.1 no significant homology; hypothetical protein 2903607 990911 CPE2534 Clostridium perfringens str. 13 hypothetical protein NP_563450.1 2903428 D 195102 CDS NP_563451.1 18311517 990912 complement(2903647..2905014) 1 NC_003366.1 similar to gpu:AP001514_169 BH2163 gene product from Bacillus halodurans (464 aa); 32.2% identity in 423 aa overlap. 12 transmembrane regions were found by PSORT.; MATE efflux family protein 2905014 990912 CPE2535 Clostridium perfringens str. 13 MATE efflux family protein NP_563451.1 2903647 R 195102 CDS NP_563452.1 18311518 990913 complement(2905203..2905835) 1 NC_003366.1 no significant homology 6 transmembrane regions were found by PSORT.; hypothetical protein 2905835 990913 CPE2536 Clostridium perfringens str. 13 hypothetical protein NP_563452.1 2905203 R 195102 CDS NP_563453.1 18311519 990914 complement(2905948..2906640) 1 NC_003366.1 similar to gp:AF052290_6 c-type cytochrome biogenesis protein from Synechococcus PCC7002 (246 aa); 32.6% identity in 181 aa overlap. N-terminal signal sequence and 6 transmembrane regions were found by PSORT.; hypothetical protein 2906640 990914 CPE2537 Clostridium perfringens str. 13 hypothetical protein NP_563453.1 2905948 R 195102 CDS NP_563454.1 18311520 990915 complement(2906644..2907078) 1 NC_003366.1 similar to pir:H70444 hypothetical protein aq_1669 from Aquifex aeolicus (164 aa); 37.4% identity in 91 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2907078 990915 CPE2538 Clostridium perfringens str. 13 hypothetical protein NP_563454.1 2906644 R 195102 CDS NP_563455.1 18311521 990916 complement(2907177..2908175) 1 NC_003366.1 similar to gpu:AF309566_1 transcriptional regulator CcpA from Clostridium perfringens (332 aa); 99.1% identity in 332 aa overlap; transcriptional regulator 2908175 ccpA 990916 ccpA Clostridium perfringens str. 13 transcriptional regulator NP_563455.1 2907177 R 195102 CDS NP_563456.1 18311522 990917 2908507..2908836 1 NC_003366.1 similar to pir:S49425 sulfide dehydrogenase (EC 1.-.-.-) from Wolinella succinogenes (149 aa); 36.2% identity in 94 aa overlap; rhodanese-like domain-containing protein 2908836 990917 CPE2540 Clostridium perfringens str. 13 rhodanese-like domain-containing protein NP_563456.1 2908507 D 195102 CDS NP_563457.1 18311523 990918 complement(2908882..2912001) 1 NC_003366.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 2912001 ileS 990918 ileS Clostridium perfringens str. 13 isoleucyl-tRNA synthetase NP_563457.1 2908882 R 195102 CDS NP_563458.1 18311524 990919 2912668..2912883 1 NC_003366.1 no significant homology; (2Fe-2S)-binding protein 2912883 990919 CPE2542 Clostridium perfringens str. 13 (2Fe-2S)-binding protein NP_563458.1 2912668 D 195102 CDS NP_563459.1 18311525 990920 complement(2913051..2913659) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2913659 990920 CPE2543 Clostridium perfringens str. 13 hypothetical protein NP_563459.1 2913051 R 195102 CDS NP_563460.1 18311526 990921 complement(2913823..2915751) 1 NC_003366.1 similar to pir:A69814 ABC transporter (ATP-binding protein) homolog yfmR from Bacillus subtilis (629 aa); 47.1% identity in 637 aa overlap. 1 transmembrane region was found by PSORT; ATP-binding protein; ABC transporter 2915751 990921 CPE2544 Clostridium perfringens str. 13 ABC transporter NP_563460.1 2913823 R 195102 CDS NP_563461.1 18311527 990922 complement(2915882..2916487) 1 NC_003366.1 similar to gpu:AP001510_5 BH0830 gene product from Bacillus halodurans (186 aa); 35.5% identity in 155 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 2916487 990922 CPE2545 Clostridium perfringens str. 13 hypothetical protein NP_563461.1 2915882 R 195102 CDS NP_563462.1 18311528 990923 complement(2916487..2917152) 1 NC_003366.1 similar to gpu:AP001516_108 transcriptional regulator of extracellular enzyme genes from Bacillus halodurans (224 aa); 36.7% identity in 218 aa overlap; transcriptional regulator 2917152 990923 CPE2546 Clostridium perfringens str. 13 transcriptional regulator NP_563462.1 2916487 R 195102 CDS NP_563463.1 18311529 990924 complement(2917577..2917891) 1 NC_003366.1 no significant homology; hypothetical protein 2917891 990924 CPE2547 Clostridium perfringens str. 13 hypothetical protein NP_563463.1 2917577 R 195102 CDS NP_563464.1 18311530 990925 2918053..2919228 1 NC_003366.1 similar to pir:C72220 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (391 aa); 40.6% identity in 382 aa overlap; methyltransferase 2919228 990925 CPE2548 Clostridium perfringens str. 13 methyltransferase NP_563464.1 2918053 D 195102 CDS NP_563465.1 18311531 990926 complement(2919593..2919940) 1 NC_003366.1 similar to pir:G72254 hypothetical protein from Thermotoga maritima (strain MSB8) (138 aa); 39.5% identity in 114 aa overlap; hypothetical protein 2919940 990926 CPE2549 Clostridium perfringens str. 13 hypothetical protein NP_563465.1 2919593 R 195102 CDS NP_563466.1 18311532 990927 complement(2919943..2921196) 1 NC_003366.1 similar to pir:F72254 hypothetical protein TM1433 from Thermotoga maritima (strain MSB8) (403 aa); 43.4% identity in 415 aa overlap; oxidoreductase, pyridine nucleotide-disulfide family 2921196 990927 CPE2550 Clostridium perfringens str. 13 oxidoreductase, pyridine nucleotide-disulfide family NP_563466.1 2919943 R 195102 CDS NP_563467.1 18311533 990928 complement(2921209..2922639) 1 NC_003366.1 similar to pir:E72254 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (479 aa); 41.9% identity in 458 aa overlap. Also similar to pir:B75218 glycerol-3-phosphate dehydrogenase (glpa) PAB0183 from Pyrococcus abyssi (strain Orsay). N-terminal signal sequence was found by PSORT; glycerol-3-phosphate dehydrogenase 2922639 glpA 990928 glpA Clostridium perfringens str. 13 glycerol-3-phosphate dehydrogenase NP_563467.1 2921209 R 195102 CDS NP_563468.1 18311534 990929 complement(2922805..2924307) 1 NC_003366.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 2924307 glpK 990929 glpK Clostridium perfringens str. 13 glycerol kinase NP_563468.1 2922805 R 195102 CDS NP_563469.1 18311535 990930 complement(2924327..2924887) 1 NC_003366.1 similar to sp:YGCP_ECOLI HYPOTHETICAL 20.8 KDA PROTEIN IN CYSJ-ENO INTERGENIC REGION from Escherichia coli (strain K-12 (191 aa); 40.6% identity in 180 aa overlap. Also similar to pir:D72254 glycerol uptake operon antiterminator from Thermotoga maritima (strain MSB8). 1 transmembrane region was found by PSORT; glycerol uptake operon antiterminator 2924887 glpP 990930 glpP Clostridium perfringens str. 13 glycerol uptake operon antiterminator NP_563469.1 2924327 R 195102 CDS NP_563470.1 18311536 990931 complement(2924929..2925636) 1 NC_003366.1 similar to sp:GLPF_THEMA PROBABLE GLYCEROL UPTAKE FACILITATOR PROTEIN from Thermotoga maritima (strain MSB8) (234 aa); 53.7% identity in 231 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; glycerol uptake facilitator protein 2925636 glpF 990931 glpF Clostridium perfringens str. 13 glycerol uptake facilitator protein NP_563470.1 2924929 R 195102 CDS NP_563471.1 18311537 990932 complement(2925903..2926346) 1 NC_003366.1 no significant homology; hypothetical protein 2926346 990932 CPE2555 Clostridium perfringens str. 13 hypothetical protein NP_563471.1 2925903 R 195102 CDS NP_563472.1 18311538 990933 complement(2926607..2927350) 1 NC_003366.1 catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate; 2-phosphosulfolactate phosphatase 2927350 990933 CPE2556 Clostridium perfringens str. 13 2-phosphosulfolactate phosphatase NP_563472.1 2926607 R 195102 CDS NP_563473.1 18311539 990934 complement(2927377..2928312) 1 NC_003366.1 similar to pir:D69999 conserved hypothetical protein ytqA from Bacillus subtilis (322 aa); 55.3% identity in 302 aa overlap; radical SAM protein 2928312 990934 CPE2557 Clostridium perfringens str. 13 radical SAM protein NP_563473.1 2927377 R 195102 CDS NP_563474.1 18311540 990935 complement(2928405..2929490) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2929490 990935 CPE2558 Clostridium perfringens str. 13 hypothetical protein NP_563474.1 2928405 R 195102 CDS NP_563475.1 18311541 990936 2929650..2930702 1 NC_003366.1 similar to pir:H69867 conserved hypothetical protein ykvI from Bacillus subtilis (347 aa); 28% identity in 329 aa overlap. N-terminal signal sequence and 9 transmembrane regions were found by PSORT.; hypothetical protein 2930702 990936 CPE2559 Clostridium perfringens str. 13 hypothetical protein NP_563475.1 2929650 D 195102 CDS NP_563476.1 18311542 990937 complement(2930754..2932070) 1 NC_003366.1 similar to pir:I40824 spore cortex-lytic enzyme precursor from Clostridium perfringen (438 aa); 96.1% identity in 438 aa overlap; spore cortex-lytic enzyme SleC 2932070 990937 CPE2560 Clostridium perfringens str. 13 spore cortex-lytic enzyme SleC NP_563476.1 2930754 R 195102 CDS NP_563477.1 18311543 990938 complement(2932193..2933941) 1 NC_003366.1 similar to prf:2204349A ORF 1 from Clostridium perfringens (242 aa); 93.8% identity in 242 aa overlap. 1 transmembrane region was found by PSORT; Ser-type protease 2933941 990938 CPE2561 Clostridium perfringens str. 13 Ser-type protease NP_563477.1 2932193 R 195102 CDS NP_563478.1 18311544 990939 complement(2933944..2935641) 1 NC_003366.1 similar to prf:2506437A Ser-type protease from Aquifex pyrophilus (619 aa); 28.5% identity in 494 aa overlap; protease CspB 2935641 990939 CPE2562 Clostridium perfringens str. 13 protease CspB NP_563478.1 2933944 R 195102 CDS NP_563479.1 18311545 990940 complement(2935657..2937393) 1 NC_003366.1 partially similar to prf:2204349A ORF 1 from Clostridium perfringens (242 aa); 51.3% identity in 236 aa overlap. 1 transmembrane region was found by PSORT; Ser-type protease 2937393 990940 CPE2563 Clostridium perfringens str. 13 Ser-type protease NP_563479.1 2935657 R 195102 CDS NP_563480.1 18311546 990941 complement(2937534..2938205) 1 NC_003366.1 partially similar to pir:F72267 hypothetical protein TM1330 from Thermotoga maritima (strain MSB8) (111 aa); 40% identity in 55 aa overlap; hypothetical protein 2938205 990941 CPE2564 Clostridium perfringens str. 13 hypothetical protein NP_563480.1 2937534 R 195102 CDS NP_563481.1 18311547 990942 complement(2938206..2938580) 1 NC_003366.1 similar to pir:F75170 hypothetical protein PAB0357 from Pyrococcus abyssi (strain Orsay) (134 aa); 25.9% identity in 108 aa overlap; hypothetical protein 2938580 990942 CPE2565 Clostridium perfringens str. 13 hypothetical protein NP_563481.1 2938206 R 195102 CDS NP_563482.1 18311548 990943 complement(2938609..2939121) 1 NC_003366.1 similar to gpu:AP001512_132 peptidyl-prolyl cis-trans isomerase B (EC 5.2.1.8) from Bacillus haloduran (145 aa); 59.5% identity in 131 aa overlap; cyclophilin type peptidyl-prolyl cis-trans isomerase 2939121 990943 CPE2566 Clostridium perfringens str. 13 cyclophilin type peptidyl-prolyl cis-trans isomerase NP_563482.1 2938609 R 195102 CDS NP_563483.1 18311549 990944 complement(2939362..2939631) 1 NC_003366.1 no significant homology; hypothetical protein 2939631 990944 CPE2567 Clostridium perfringens str. 13 hypothetical protein NP_563483.1 2939362 R 195102 CDS NP_563484.1 18311550 990945 complement(2939866..2940648) 1 NC_003366.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 2940648 990945 CPE2568 Clostridium perfringens str. 13 glutamate racemase NP_563484.1 2939866 R 195102 CDS NP_563485.1 18311551 990946 2940944..2942845 1 NC_003366.1 similar to prf:1407183A Gln synthetase from Clostridium acetobutylicum (443 aa); 30.3% identity in 426 aa overlap. S.D. unclear; glutamine synthetase 2942845 990946 CPE2569 Clostridium perfringens str. 13 glutamine synthetase NP_563485.1 2940944 D 195102 CDS NP_563486.1 18311552 990947 complement(2942935..2943219) 1 NC_003366.1 no significant homology; hypothetical protein 2943219 990947 CPE2570 Clostridium perfringens str. 13 hypothetical protein NP_563486.1 2942935 R 195102 CDS NP_563487.1 18311553 990948 complement(2943457..2944098) 1 NC_003366.1 similar to gpu:AP001520_191 BH3967 gene product from Bacillus halodurans (194 aa); 27.1% identity in 170 aa overlap. N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 2944098 990948 CPE2571 Clostridium perfringens str. 13 hypothetical protein NP_563487.1 2943457 R 195102 CDS NP_563488.1 18311554 990949 complement(2944713..2947916) 1 NC_003366.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 2947916 carB 990949 carB Clostridium perfringens str. 13 carbamoyl phosphate synthase large subunit NP_563488.1 2944713 R 195102 CDS NP_563489.1 18311555 990950 complement(2947929..2948978) 1 NC_003366.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 2948978 carA 990950 carA Clostridium perfringens str. 13 carbamoyl phosphate synthase small subunit NP_563489.1 2947929 R 195102 CDS NP_563490.1 18311556 990951 2949636..2950292 1 NC_003366.1 no significant homology; hypothetical protein 2950292 990951 CPE2574 Clostridium perfringens str. 13 hypothetical protein NP_563490.1 2949636 D 195102 CDS NP_563491.1 18311557 990952 complement(2950548..2952020) 1 NC_003366.1 similar to C-terminal region of gp:AB016820_1 hydrogenase from Clostridium perfringens (572 aa); 35.4% identity in 311 aa overlap; [Fe] hydrogenase 2952020 990952 CPE2575 Clostridium perfringens str. 13 [Fe] hydrogenase NP_563491.1 2950548 R 195102 CDS NP_563492.1 18311558 990953 complement(2952091..2952708) 1 NC_003366.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 2952708 990953 CPE2576 Clostridium perfringens str. 13 3-methyladenine DNA glycosylase NP_563492.1 2952091 R 195102 CDS NP_563493.1 18311559 990954 complement(2953008..2953319) 1 NC_003366.1 similar to gpu:AP001510_85 PTS system, cellobiose-specific enzyme II, A component (EIIA-cell) from Bacillus halodurans (110 aa); 55.4% identity in 101 aa overlap; cellobiose-specific enzyme IIA component; PTS system transporter 2953319 990954 CPE2577 Clostridium perfringens str. 13 PTS system transporter NP_563493.1 2953008 R 195102 CDS NP_563494.1 18311560 990955 complement(2953420..2954667) 1 NC_003366.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 2954667 proA 990955 proA Clostridium perfringens str. 13 gamma-glutamyl phosphate reductase NP_563494.1 2953420 R 195102 CDS NP_563495.1 18311561 990956 complement(2954670..2955479) 1 NC_003366.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 2955479 proB 990956 proB Clostridium perfringens str. 13 gamma-glutamyl kinase NP_563495.1 2954670 R 195102 CDS NP_563496.1 18311562 990957 complement(2955566..2956444) 1 NC_003366.1 similar to pir:G83378 probable short-chain dehydrogenase PA2142 from Pseudomonas aeruginosa (strain PAO1) (286 aa); 53.4% identity in 283 aa overlap; oxidoreductase, short chain dehydrogenase/reductase 2956444 990957 CPE2580 Clostridium perfringens str. 13 oxidoreductase, short chain dehydrogenase/reductase NP_563496.1 2955566 R 195102 CDS NP_563497.1 18311563 990958 complement(2956508..2957281) 1 NC_003366.1 similar to pir:H83564 probable short-chain dehydrogenase PA0658 from Pseudomonas aeruginosa (strain PAO1) (266 aa); 35% identity in 260 aa overlap; oxidoreductase, short-chain dehydrogenase/reductase 2957281 990958 CPE2581 Clostridium perfringens str. 13 oxidoreductase, short-chain dehydrogenase/reductase NP_563497.1 2956508 R 195102 CDS NP_563498.1 18311564 990959 2957466..2958758 1 NC_003366.1 similar to gpu:AP001514_36 BH2030 gene product from Bacillus halodurans (432 aa); 50.5% identity in 426 aa overlap. 12 transmembrane regions were found by PSORT.; hypothetical protein 2958758 990959 CPE2582 Clostridium perfringens str. 13 hypothetical protein NP_563498.1 2957466 D 195102 CDS NP_563499.1 18311565 990960 2958849..2959076 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2959076 990960 CPE2583 Clostridium perfringens str. 13 hypothetical protein NP_563499.1 2958849 D 195102 CDS NP_563500.2 161485638 990961 complement(2959142..2960785) 1 NC_003366.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 2960785 990961 CPE2584 Clostridium perfringens str. 13 hydroxylamine reductase NP_563500.2 2959142 R 195102 CDS NP_563501.1 18311567 990962 2961168..2962445 1 NC_003366.1 similar to pir:H82504 conserved hypothetical protein VCA0076 from Vibrio cholerae (group O1 strain N16961) (458 aa); 47.7% identity in 426 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; nucleoside recognition domain-containing protein 2962445 990962 CPE2585 Clostridium perfringens str. 13 nucleoside recognition domain-containing protein NP_563501.1 2961168 D 195102 CDS NP_563502.1 18311568 990963 complement(2962484..2963272) 1 NC_003366.1 similar to gpu:AC022314_20 F9C16.20 from Arabidopsis thaliana (299 aa); 34.7% identity in 144 aa overlap; hypothetical protein 2963272 990963 CPE2586 Clostridium perfringens str. 13 hypothetical protein NP_563502.1 2962484 R 195102 CDS NP_563503.1 18311569 990964 2963405..2963989 1 NC_003366.1 similar to gpu:AP001517_123 maltose transacetylase (maltose O-acetyltransferase) from Bacillus halodurans (186 aa); 55.1% identity in 187 aa overlap; maltose transacetylase 2963989 990964 CPE2587 Clostridium perfringens str. 13 maltose transacetylase NP_563503.1 2963405 D 195102 CDS NP_563504.1 18311570 990965 2964045..2964518 1 NC_003366.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 2964518 990965 CPE2588 Clostridium perfringens str. 13 methionine sulfoxide reductase A NP_563504.1 2964045 D 195102 CDS NP_563505.1 18311571 990966 complement(2964520..2966004) 1 NC_003366.1 similar to pir:D75204 site specific DNA-methyltransferase PAB2246 from Pyrococcus abyssi (strain Orsay) (464 aa); 25.2% identity in 476 aa overlap; site specific DNA-methyltransferase 2966004 990966 CPE2589 Clostridium perfringens str. 13 site specific DNA-methyltransferase NP_563505.1 2964520 R 195102 CDS NP_563506.1 18311572 990967 complement(2966133..2968289) 1 NC_003366.1 partially similar to pir:A48653 phage infection protein precursor from Lactococcus lactis subsp. lactis (strain C2) (901 aa); 29.8% identity in 487 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; phage infection protein 2968289 990967 CPE2590 Clostridium perfringens str. 13 phage infection protein NP_563506.1 2966133 R 195102 CDS NP_563507.1 18311573 990968 complement(2968312..2970477) 1 NC_003366.1 similar to pir:E69115 phage infection protein homolog from Methanobacterium thermoautotrophicum (strain Delta H) (631 aa); 28.8% identity in 713 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; phage infection protein 2970477 990968 CPE2591 Clostridium perfringens str. 13 phage infection protein NP_563507.1 2968312 R 195102 CDS NP_563508.1 18311574 990969 complement(2970830..2971168) 1 NC_003366.1 similar to sp:PHNA_ECOLI PHNA PROTEIN from Escherichia coli (111 aa); 75.9% identity in 108 aa overlap; phnA family protein 2971168 phnA 990969 phnA Clostridium perfringens str. 13 phnA family protein NP_563508.1 2970830 R 195102 CDS NP_563509.1 18311575 990970 complement(2971382..2972188) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 2972188 990970 CPE2593 Clostridium perfringens str. 13 hypothetical protein NP_563509.1 2971382 R 195102 CDS NP_563510.1 18311576 990971 complement(2972325..2973356) 1 NC_003366.1 no significant homology; hypothetical protein 2973356 990971 CPE2594 Clostridium perfringens str. 13 hypothetical protein NP_563510.1 2972325 R 195102 CDS NP_563511.1 18311577 990972 complement(2973480..2974913) 1 NC_003366.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 2974913 990972 CPE2595 Clostridium perfringens str. 13 potassium/proton antiporter NP_563511.1 2973480 R 195102 CDS NP_563512.1 18311578 990973 complement(2975166..2975534) 1 NC_003366.1 no significant homology 4 transmembrane regions were found by PSORT.; hypothetical protein 2975534 990973 CPE2596 Clostridium perfringens str. 13 hypothetical protein NP_563512.1 2975166 R 195102 CDS NP_563513.1 18311579 990974 2976070..2976468 1 NC_003366.1 no significant homology N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; hypothetical protein 2976468 990974 CPE2597 Clostridium perfringens str. 13 hypothetical protein NP_563513.1 2976070 D 195102 CDS NP_563514.1 18311580 990975 2976653..2977543 1 NC_003366.1 similar to gpu:AP001512_98 oxidoreductase (short chain dehydrogenase/reductase) from Bacillus halodurans (287 aa); 60.2% identity in 284 aa overlap; short chain dehydrogenase/reductase; oxidoreductase 2977543 990975 CPE2598 Clostridium perfringens str. 13 oxidoreductase NP_563514.1 2976653 D 195102 CDS NP_563515.1 18311581 990976 complement(2977704..2977856) 1 NC_003366.1 no significant homology; hypothetical protein 2977856 990976 CPE2599 Clostridium perfringens str. 13 hypothetical protein NP_563515.1 2977704 R 195102 CDS NP_563516.1 18311582 990977 complement(2978227..2978706) 1 NC_003366.1 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 2978706 990977 CPE2600 Clostridium perfringens str. 13 rRNA large subunit methyltransferase NP_563516.1 2978227 R 195102 CDS NP_563517.1 18311583 990978 complement(2978953..2979324) 1 NC_003366.1 no significant homology N-terminal signal sequence and 2 transmembrane regions were found by PSORT.; hypothetical protein 2979324 990978 CPE2601 Clostridium perfringens str. 13 hypothetical protein NP_563517.1 2978953 R 195102 CDS NP_563518.1 18311584 990979 complement(2979554..2980195) 1 NC_003366.1 similar to pir:F72412 hypothetical protein from Thermotoga maritima (strain MSB8) (215 aa); 43% identity in 207 aa overlap; hypothetical protein 2980195 990979 CPE2602 Clostridium perfringens str. 13 hypothetical protein NP_563518.1 2979554 R 195102 CDS NP_563519.1 18311585 990980 complement(2980302..2980802) 1 NC_003366.1 no significant homology; hypothetical protein 2980802 990980 CPE2603 Clostridium perfringens str. 13 hypothetical protein NP_563519.1 2980302 R 195102 CDS NP_563520.1 18311586 990981 complement(2980945..2981499) 1 NC_003366.1 partially similar to gpu:AP001517_192 germination (cortex hydrolysis) and sporulation (stage II, multiple polar septa) from Bacillus halodurans (365 aa); 30% identity in 110 aa overlap; hypothetical protein 2981499 990981 CPE2604 Clostridium perfringens str. 13 hypothetical protein NP_563520.1 2980945 R 195102 CDS NP_563521.1 18311587 990982 complement(2981515..2982306) 1 NC_003366.1 similar to gpu:AP001520_247 BH4023 gene product from Bacillus halodurans (264 aa); 41.8% identity in 256 aa overlap; metallo-beta-lactamase 2982306 990982 CPE2605 Clostridium perfringens str. 13 metallo-beta-lactamase NP_563521.1 2981515 R 195102 CDS NP_563522.1 18311588 990983 complement(2982329..2983582) 1 NC_003366.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2983582 murA 990983 murA Clostridium perfringens str. 13 UDP-N-acetylglucosamine 1-carboxyvinyltransferase NP_563522.1 2982329 R 195102 CDS NP_563523.1 18311589 990984 2983922..2984467 1 NC_003366.1 no significant homology; hypothetical protein 2984467 990984 CPE2607 Clostridium perfringens str. 13 hypothetical protein NP_563523.1 2983922 D 195102 CDS NP_563524.1 18311590 990985 2984662..2985141 1 NC_003366.1 similar to gpu:AP001517_255 BH3133 gene product from Bacillus halodurans (162 aa); 32.2% identity in 149 aa overlap; hypothetical protein 2985141 990985 CPE2608 Clostridium perfringens str. 13 hypothetical protein NP_563524.1 2984662 D 195102 CDS NP_563525.1 18311591 990986 2985197..2985628 1 NC_003366.1 no significant homology N-terminal signal sequence and 4 transmembrane regions were found by PSORT.; hypothetical protein 2985628 990986 CPE2609 Clostridium perfringens str. 13 hypothetical protein NP_563525.1 2985197 D 195102 CDS NP_563526.1 18311592 990987 2985695..2986891 1 NC_003366.1 similar to pir:A69587 intracellular alkaline serine proteinase aprX from Bacillus subtilis (442 aa); 28.6% identity in 336 aa overlap. 1 transmembrane region was found by PSORT; subtilase 2986891 aprX 990987 aprX Clostridium perfringens str. 13 subtilase NP_563526.1 2985695 D 195102 CDS NP_563527.1 18311593 990988 complement(2986894..2987946) 1 NC_003366.1 partially similar to pir:S76492 lipoprotein nlpD from Synechocystis sp. (strain PCC 6803) (715 aa); 53.2% identity in 109 aa overlap. N-terminal signal sequence was found by PSORT; M23/M37 family peptidase 2987946 990988 CPE2611 Clostridium perfringens str. 13 M23/M37 family peptidase NP_563527.1 2986894 R 195102 CDS NP_563528.1 18311594 990989 2988177..2989178 1 NC_003366.1 similar to sp:DNAD_BACSU DNA REPLICATION PROTEIN DNAD from Bacillus subtilis (232 aa); 23.9% identity in 184 aa overlap; chromosome replication initiation protein 2989178 dnaD 990989 dnaD Clostridium perfringens str. 13 chromosome replication initiation protein NP_563528.1 2988177 D 195102 CDS NP_563529.1 18311595 990990 2989175..2990170 1 NC_003366.1 acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 2990170 dnaC 990990 dnaC Clostridium perfringens str. 13 DNA replication protein DnaC NP_563529.1 2989175 D 195102 CDS NP_563530.1 18311596 989267 complement(2991273..2991857) 1 NC_003366.1 no significant homology; hypothetical protein 2991857 989267 CPE2614 Clostridium perfringens str. 13 hypothetical protein NP_563530.1 2991273 R 195102 CDS NP_563531.1 18311597 989268 2992054..2993250 1 NC_003366.1 similar to gpu:AP001518_110 BH3279 gene product from Bacillus halodurans (422 aa); 30.1% identity in 395 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 2993250 989268 CPE2615 Clostridium perfringens str. 13 hypothetical protein NP_563531.1 2992054 D 195102 CDS NP_563532.1 18311598 989269 complement(2993418..2994176) 1 NC_003366.1 partially similar to prf:2320383A thioesterase from Cuphea wrightii (398 aa); 20.8% identity in 226 aa overlap; hypothetical protein 2994176 989269 CPE2616 Clostridium perfringens str. 13 hypothetical protein NP_563532.1 2993418 R 195102 CDS NP_563533.1 18311599 989270 complement(2994199..2994939) 1 NC_003366.1 similar to gp:UCU17097_1 Uc FatB2 from Umbellularia californica (383 aa); 23.8% identity in 244 aa overlap; acyl-ACP thioesterase 2994939 989270 CPE2617 Clostridium perfringens str. 13 acyl-ACP thioesterase NP_563533.1 2994199 R 195102 CDS NP_563534.1 18311600 989272 complement(2995072..2995614) 1 NC_003366.1 similar to sp:Y746_METJA HYPOTHETICAL PROTEIN MJ0746 from Methanococcus jannaschii (141 aa); 44.8% identity in 143 aa overlap; hypothetical protein 2995614 989272 CPE2618 Clostridium perfringens str. 13 hypothetical protein NP_563534.1 2995072 R 195102 CDS NP_563535.1 18311601 989273 complement(2995896..2996087) 1 NC_003366.1 no significant homology; hypothetical protein 2996087 989273 CPE2619 Clostridium perfringens str. 13 hypothetical protein NP_563535.1 2995896 R 195102 CDS NP_563536.1 18311602 989274 complement(2996197..2996436) 1 NC_003366.1 no significant homology 1 transmembrane region was found by PSORT; hypothetical protein 2996436 989274 CPE2620 Clostridium perfringens str. 13 hypothetical protein NP_563536.1 2996197 R 195102 CDS NP_563537.1 18311603 989275 complement(2996378..2996677) 1 NC_003366.1 partially similar to gpu:AP001513_166 BH1893 gene product from Bacillus halodurans (172 aa); 39.2% identity in 97 aa overlap; MutT/nudix family protein 2996677 989275 CPE2621 Clostridium perfringens str. 13 MutT/nudix family protein NP_563537.1 2996378 R 195102 CDS NP_563538.1 18311604 989276 complement(2996805..2998091) 1 NC_003366.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 2998091 purA 989276 purA Clostridium perfringens str. 13 adenylosuccinate synthetase NP_563538.1 2996805 R 195102 CDS NP_563539.1 18311605 989277 2998572..2999252 1 NC_003366.1 similar to sp:SDHB_BACSU PROBABLE L-SERINE DEHYDRATASE, BETA CHAIN (EC 4.2.1.13) (L-SERINE DEAMINASE) (SDH) (L-SD) from Bacillus subtilis (220 aa); 38.4% identity in 219 aa overlap; L-serine dehydratase subunit beta 2999252 sdhB 989277 sdhB Clostridium perfringens str. 13 L-serine dehydratase subunit beta NP_563539.1 2998572 D 195102 CDS NP_563540.1 18311606 989278 2999253..3000134 1 NC_003366.1 similar to sp:SDHA_BACSU PROBABLE L-SERINE DEHYDRATASE, ALPHA CHAIN (EC 4.2.1.13) (L-SERINE DEAMINASE) (SDH) (L-SD) from Bacillus subtilis (300 aa); 42.2% identity in 287 aa overlap. 3 transmembrane regions were found by PSORT.; L-serine dehydratase subunit alpha 3000134 sdhA 989278 sdhA Clostridium perfringens str. 13 L-serine dehydratase subunit alpha NP_563540.1 2999253 D 195102 CDS NP_563541.1 18311607 989279 3000370..3001542 1 NC_003366.1 similar to sp:AGAS_STRCO TAGATOSE-6-PHOSPHATE KETOSE/ALDOSE ISOMERASE (EC 5.-.-.-) from Streptomyces coelicolor (385 aa); 41.2% identity in 374 aa overlap. 1 transmembrane region was found by PSORT; tagatose-6-phosphate aldose/ketose isomerase 3001542 989279 CPE2625 Clostridium perfringens str. 13 tagatose-6-phosphate aldose/ketose isomerase NP_563541.1 3000370 D 195102 CDS NP_563542.1 18311608 989280 3001562..3002419 1 NC_003366.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 3002419 gatY 989280 gatY Clostridium perfringens str. 13 tagatose-bisphosphate aldolase NP_563542.1 3001562 D 195102 CDS NP_563543.1 18311609 989282 complement(3002476..3003201) 1 NC_003366.1 similar to gpu:AP001508_142 transcriptional regulator (GntR family) from Bacillus halodurans (240 aa); 36% identity in 239 aa overlap; GntR family; GntR family transcriptional regulator 3003201 989282 CPE2627 Clostridium perfringens str. 13 GntR family transcriptional regulator NP_563543.1 3002476 R 195102 CDS NP_563544.1 18311610 989283 complement(3003338..3003601) 1 NC_003366.1 similar to gp:AP001511_118 BH1229 gene product from Bacillus halodurans (88 aa); 25.9% identity in 58 aa overlap. N-terminal signal sequence was found by PSORT; hypothetical protein 3003601 989283 CPE2628 Clostridium perfringens str. 13 hypothetical protein NP_563544.1 3003338 R 195102 CDS NP_563545.1 18311611 989284 complement(3003618..3004022) 1 NC_003366.1 similar to pir:WQECM3 phosphotransferase system enzyme II (EC 2.7.1.69), mannose-specific, factor IIAB from Escherichia coli (323 aa); 26.6% identity in 128 aa overlap; mannose-specific enzyme IIAB component; PTS system protein 3004022 989284 CPE2629 Clostridium perfringens str. 13 PTS system protein NP_563545.1 3003618 R 195102 CDS NP_563546.1 18311612 989285 complement(3004195..3005001) 1 NC_003366.1 similar to prf:1305305C mannose permease IIm from Escherichia coli (283 aa); 35.7% identity in 266 aa overlap. 5 transmembrane regions were found by PSORT.; mannose permease IIm 3005001 989285 CPE2630 Clostridium perfringens str. 13 mannose permease IIm NP_563546.1 3004195 R 195102 CDS NP_563547.1 18311613 989286 complement(3005001..3005798) 1 NC_003366.1 similar to prf:2306373C mannose phosphotransferase:SUBUNIT=EII from Lactobacillus curvatus (270 aa); 30.8% identity in 240 aa overlap. N-terminal signal sequence and 3 transmembrane regions were found by PSORT.; mannose-specific enzyme IIC component; PTS system protein 3005798 989286 CPE2631 Clostridium perfringens str. 13 PTS system protein NP_563547.1 3005001 R 195102 CDS NP_563548.1 18311614 989287 complement(3005839..3006327) 1 NC_003366.1 similar to pir:WQECM3 phosphotransferase system enzyme II (EC 2.7.1.69), mannose-specific, factor IIAB from Escherichia coli (323 aa); 35.8% identity in 151 aa overlap; mannose-specific enzyme IIAB component; PTS system protein 3006327 989287 CPE2632 Clostridium perfringens str. 13 PTS system protein NP_563548.1 3005839 R 195102 CDS NP_563549.1 18311615 989288 complement(3006605..3007405) 1 NC_003366.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 3007405 proC 989288 proC Clostridium perfringens str. 13 pyrroline-5-carboxylate reductase NP_563549.1 3006605 R 195102 CDS NP_563550.1 18311616 989289 complement(3007583..3008917) 1 NC_003366.1 unwinds double stranded DNA; replicative DNA helicase 3008917 dnaC 989289 dnaC Clostridium perfringens str. 13 replicative DNA helicase NP_563550.1 3007583 R 195102 CDS NP_563551.1 18311617 989290 complement(3009333..3011192) 1 NC_003366.1 similar to gpu:AP001517_173 ATP-dependent proteinase La from Bacillus halodurans (556 aa); 45.2% identity in 465 aa overlap. 1 transmembrane region was found by PSORT; ATP-dependent proteinase La 3011192 lon 989290 lon Clostridium perfringens str. 13 ATP-dependent proteinase La NP_563551.1 3009333 R 195102 CDS NP_563552.1 18311618 989291 complement(3011247..3011693) 1 NC_003366.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 3011693 rplI 989291 rplI Clostridium perfringens str. 13 50S ribosomal protein L9 NP_563552.1 3011247 R 195102 CDS NP_563553.1 18311619 989293 complement(3011695..3013653) 1 NC_003366.1 similar to sp:YYBT_BACSU HYPOTHETICAL 74.3 KDA PROTEIN IN RPLI-COTF INTERGENIC REGION from Bacillus subtilis (659 aa); 34.8% identity in 621 aa overlap. N-terminal signal sequence and 1 transmembrane region were found by PSORT; DHH family protein 3013653 989293 CPE2637 Clostridium perfringens str. 13 DHH family protein NP_563553.1 3011695 R 195102 CDS NP_563554.1 18311620 989294 complement(3013686..3014681) 1 NC_003366.1 similar to sp:YYBS_BACSU HYPOTHETICAL 34.5 KDA PROTEIN IN RPLI-COTF INTERGENIC REGION from Bacillus subtilis (309 aa); 22.4% identity in 263 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; hypothetical protein 3014681 989294 CPE2638 Clostridium perfringens str. 13 hypothetical protein NP_563554.1 3013686 R 195102 CDS NP_563555.1 18311621 989295 complement(3014699..3015016) 1 NC_003366.1 no significant homology 2 transmembrane regions were found by PSORT.; hypothetical protein 3015016 989295 CPE2639 Clostridium perfringens str. 13 hypothetical protein NP_563555.1 3014699 R 195102 CDS NP_563556.1 18311622 989296 complement(3015299..3015541) 1 NC_003366.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 3015541 rpsR 989296 rpsR Clostridium perfringens str. 13 30S ribosomal protein S18 NP_563556.1 3015299 R 195102 CDS NP_563557.1 18311623 989297 complement(3015572..3016024) 1 NC_003366.1 similar to gp:BA1242593_64 SSB protein from Bacteriophage A118 (160 aa); 51% identity in 100 aa overlap; phage-related single-strand DNA-binding protein 3016024 989297 CPE2641 Clostridium perfringens str. 13 phage-related single-strand DNA-binding protein NP_563557.1 3015572 R 195102 CDS NP_563558.1 18311624 989299 complement(3016038..3016328) 1 NC_003366.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 3016328 rpsF 989299 rpsF Clostridium perfringens str. 13 30S ribosomal protein S6 NP_563558.1 3016038 R 195102 CDS NP_563559.1 18311625 989300 complement(3016469..3016681) 1 NC_003366.1 similar to gpu:AP001520_276 BH4052 gene product from Bacillus halodurans (65 aa); 45.6% identity in 57 aa overlap; hypothetical protein 3016681 989300 CPE2643 Clostridium perfringens str. 13 hypothetical protein NP_563559.1 3016469 R 195102 CDS NP_563560.1 18311626 989301 complement(3016718..3017578) 1 NC_003366.1 similar to gpu:AP001516_95 BH2666 gene product from Bacillus halodurans (276 aa); 39.3% identity in 183 aa overlap. 2 transmembrane regions were found by PSORT.; mechanosensitive ion channel protein MscS 3017578 989301 CPE2644 Clostridium perfringens str. 13 mechanosensitive ion channel protein MscS NP_563560.1 3016718 R 195102 CDS NP_563561.1 18311627 989302 complement(3017611..3017844) 1 NC_003366.1 no significant homology; hypothetical protein 3017844 989302 CPE2645 Clostridium perfringens str. 13 hypothetical protein NP_563561.1 3017611 R 195102 CDS NP_563562.1 18311628 989303 3018004..3018651 1 NC_003366.1 similar to gpu:AP001514_176 BH2170 gene product from Bacillus halodurans (209 aa); 30.7% identity in 199 aa overlap. N-terminal signal sequence and 5 transmembrane regions were found by PSORT.; hypothetical protein 3018651 989303 CPE2646 Clostridium perfringens str. 13 hypothetical protein NP_563562.1 3018004 D 195102 CDS NP_563563.1 18311629 989304 3018663..3019823 1 NC_003366.1 similar to gpu:AP001520_280 aminotransferase required for NAD biosynthesis (NifS protein) from Bacillus halodurans (383 aa); 37.5% identity in 379 aa overlap; cysteine desulfurase 3019823 nifS 989304 nifS Clostridium perfringens str. 13 cysteine desulfurase NP_563563.1 3018663 D 195102 CDS NP_563564.1 18311630 989305 3019835..3020899 1 NC_003366.1 similar to pir:C70002 conserved hypothetical protein ytvI from Bacillus subtilis (371 aa); 22.8% identity in 298 aa overlap. N-terminal signal sequence and 8 transmembrane regions were found by PSORT.; sporulation integral membrane protein YtvI 3020899 989305 CPE2648 Clostridium perfringens str. 13 sporulation integral membrane protein YtvI NP_563564.1 3019835 D 195102 CDS NP_563565.1 18311631 989306 3020949..3021539 1 NC_003366.1 similar to gpu:AP001520_278 BH4054 gene product from Bacillus halodurans (216 aa); 49.7% identity in 169 aa overlap. 1 transmembrane region was found by PSORT; sporulation protein YyaC 3021539 989306 CPE2649 Clostridium perfringens str. 13 sporulation protein YyaC NP_563565.1 3020949 D 195102 CDS NP_563566.1 18311632 989307 complement(3021690..3022187) 1 NC_003366.1 no significant homology N-terminal signal sequence was found by PSORT; hypothetical protein 3022187 989307 CPE2650 Clostridium perfringens str. 13 hypothetical protein NP_563566.1 3021690 R 195102 CDS NP_563567.1 18311633 989308 complement(3022236..3023096) 1 NC_003366.1 similar to gpu:AP001520_281 stage 0 sporulation protein J from Bacillus halodurans (288 aa); 47.4% identity in 251 aa overlap; stage 0 sporulation protein J 3023096 spo0J 989308 spo0J Clostridium perfringens str. 13 stage 0 sporulation protein J NP_563567.1 3022236 R 195102 CDS NP_563568.1 18311634 989309 complement(3023097..3023870) 1 NC_003366.1 similar to sp:SOJ_BACSU SOJ PROTEIN from (253 aa); 57.9% identity in 247 aa overlap. 1 transmembrane region was found by PSORT; ParA family; sporulation initiation inhibitor protein soj 3023870 soj 989309 soj Clostridium perfringens str. 13 sporulation initiation inhibitor protein soj NP_563568.1 3023097 R 195102 CDS NP_563569.1 18311635 989311 complement(3024120..3024839) 1 NC_003366.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 3024839 gidB 989311 gidB Clostridium perfringens str. 13 16S rRNA methyltransferase GidB NP_563569.1 3024120 R 195102 CDS NP_563570.1 18311636 989312 complement(3025016..3026908) 1 NC_003366.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 3026908 gidA 989312 gidA Clostridium perfringens str. 13 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA NP_563570.1 3025016 R 195102 CDS NP_563571.1 18311637 989313 complement(3026923..3028299) 1 NC_003366.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 3028299 trmE 989313 trmE Clostridium perfringens str. 13 tRNA modification GTPase TrmE NP_563571.1 3026923 R 195102 CDS NP_563572.1 18311638 989315 complement(3028641..3029264) 1 NC_003366.1 similar to sp:JAG_BACSU JAG PROTEIN (SPOIIIJ ASSOCIATED PROTEIN) from Bacillus subtilis (208 aa); 42% identity in 207 aa overlap; SpoIIIJ-associated protein 3029264 jag 989315 jag Clostridium perfringens str. 13 SpoIIIJ-associated protein NP_563572.1 3028641 R 195102 CDS NP_563573.1 18311639 989317 complement(3029306..3030022) 1 NC_003366.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 3030022 spoIIIJ 989317 spoIIIJ Clostridium perfringens str. 13 inner membrane protein translocase component YidC NP_563573.1 3029306 R 195102 CDS NP_563574.1 18311640 989324 complement(3030056..3030265) 1 NC_003366.1 similar to pir:G72251 conserved hypothetical protein from Thermotoga maritima (strain MSB8) (81 aa); 63.2% identity in 68 aa overlap; hypothetical protein 3030265 989324 CPE2658 Clostridium perfringens str. 13 hypothetical protein NP_563574.1 3030056 R 195102 CDS NP_563575.1 18311641 989327 complement(3030237..3030614) 1 NC_003366.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 3030614 rnpA 989327 rnpA Clostridium perfringens str. 13 ribonuclease P NP_563575.1 3030237 R 195102 CDS NP_563576.1 18311642 989350 complement(3030675..3030809) 1 NC_003366.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 3030809 rpmH 989350 rpmH Clostridium perfringens str. 13 50S ribosomal protein L34 NP_563576.1 3030675 R 195102 CDS