-- dump date 20140619_043958 -- class Genbank::CDS -- table cds_note -- id note YP_005044685.1 PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA YP_005044686.1 PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit YP_005044687.1 PFAM: S4 domain; TIGRFAM: S4 domain protein YaaA YP_005044688.1 PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: recF protein; manually curated YP_005044690.1 PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit; manually curated YP_005044691.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_005044692.1 PFAM: Sugar-specific transcriptional regulator TrmB; ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins; manually curated YP_005044694.1 PFAM: Tetratricopeptide repeat; manually curated YP_005044695.1 PFAM: tRNA synthetase class II core domain (G, H, P, S and T); Seryl-tRNA synthetase N-terminal domain; TIGRFAM: seryl-tRNA synthetase YP_005044696.1 PFAM: Major Facilitator Superfamily; manually curated YP_005044697.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit YP_005044698.1 PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II YP_005044700.1 PFAM: S-layer homology domain YP_005044702.1 PFAM: Putative peptidoglycan binding domain; G5 domain; VanW like protein YP_005044703.1 PFAM: Protein of unknown function (DUF2508) YP_005044704.1 PFAM: SigmaK-factor processing regulatory protein BofA; TIGRFAM: pro-sigmaK processing inhibitor BofA YP_005044705.1 PFAM: domain; Domain of unknown function; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric YP_005044708.1 PFAM: Helix-turn-helix YP_005044709.1 manually curated YP_005044710.1 PFAM: Choline/ethanolamine kinase; TIGRFAM: spore coat protein, CotS family YP_005044711.1 PFAM: Formate--tetrahydrofolate ligase YP_005044712.1 PFAM: YabG peptidase U57; TIGRFAM: sporulation peptidase YabG; manually curated YP_005044713.1 PFAM: Protein of unknown function (DUF1021) YP_005044715.1 PFAM: LysM domain YP_005044716.1 PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_005044717.1 PFAM: Bacterial regulatory proteins, gntR family; FCD domain YP_005044718.1 PFAM: Heavy-metal-associated domain YP_005044719.1 PFAM: CheB methylesterase; Response regulator receiver domain YP_005044720.1 PFAM: ATPase family associated with various cellular activities (AAA) YP_005044723.1 PFAM: Protein of unknown function (DUF342); manually curated YP_005044724.1 PFAM: Calcineurin-like phosphoesterase YP_005044725.1 manually curated YP_005044726.1 PFAM: NlpC/P60 family; Bacterial SH3 domain YP_005044727.1 PFAM: Glycosyl hydrolase family 10 YP_005044729.1 manually curated YP_005044730.1 PFAM: von Willebrand factor type A domain; manually curated YP_005044731.1 PFAM: von Willebrand factor type A domain; TIGRFAM: N-terminal double-transmembrane domain YP_005044733.1 PFAM: Protein of unknown function DUF58 YP_005044734.1 PFAM: ATPase family associated with various cellular activities (AAA) YP_005044735.1 PFAM: Glycosyltransferase family 28 C-terminal domain; Monogalactosyldiacylglycerol (MGDG) synthase YP_005044736.1 PFAM: Putative peptidoglycan binding domain; Cell Wall Hydrolase; TIGRFAM: spore cortex-lytic enzyme YP_005044737.1 TIGRFAM: germination protein YpeB YP_005044738.1 PFAM: CAAX amino terminal protease family YP_005044739.1 PFAM: IstB-like ATP binding protein YP_005044740.1 PFAM: Replication initiation and membrane attachment protein (DnaB); TIGRFAM: DnaD and phage-associated domain YP_005044742.1 PFAM: MotA/TolQ/ExbB proton channel family YP_005044743.1 PFAM: OmpA family YP_005044744.1 PFAM: Protein of unknown function (DUF1385) YP_005044745.1 PFAM: Methyltransferase small domain; TIGRFAM: HemK family putative methylases; protein-(glutamine-N5) methyltransferase, release factor-specific YP_005044746.1 PFAM: Domain of unknown function DUF20; TIGRFAM: sporulation integral membrane protein YtvI YP_005044747.1 PFAM: Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit YP_005044748.1 PFAM: NQR2, RnfD, RnfE family; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit YP_005044749.1 PFAM: FMN-binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, G subunit YP_005044750.1 PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit YP_005044751.1 PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit YP_005044752.1 PFAM: Putative Fe-S cluster; 4Fe-4S binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit YP_005044754.1 PFAM: Shikimate kinase YP_005044755.1 PFAM: Glycosyl hydrolases family 43 YP_005044756.1 PFAM: Thermophilic metalloprotease (M29) YP_005044757.1 PFAM: Oligopeptidase F; Peptidase family M3; TIGRFAM: oligoendopeptidase F YP_005044758.1 PFAM: MazG nucleotide pyrophosphohydrolase domain YP_005044759.1 PFAM: S-layer homology domain; Fibronectin type III domain YP_005044760.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthase (NADPH), homotetrameric YP_005044761.1 PFAM: Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain YP_005044762.1 PFAM: Copper amine oxidase N-terminal domain; Glycosyl hydrolases family 18 YP_005044763.1 PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YP_005044765.1 PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_005044766.1 PFAM: MatE; TIGRFAM: putative efflux protein, MATE family YP_005044767.1 PFAM: Alpha-L-arabinofuranosidase B (ABFB); Dockerin type I repeat; Glycosyl hydrolases family 43 YP_005044771.1 PFAM: Protein of unknown function (DUF2791) YP_005044772.1 PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family YP_005044782.1 PFAM: Protein of unknown function (DUF3592) YP_005044783.1 PFAM: ATP synthase subunit D; TIGRFAM: H(+)-transporting ATP synthase, vacuolar type, subunit D YP_005044784.1 PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; ATP synthase alpha/beta chain, C terminal domain; TIGRFAM: ATP synthase archaeal, B subunit YP_005044785.1 PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase archaeal, A subunit YP_005044786.1 PFAM: ATP synthase (F/14-kDa) subunit YP_005044787.1 PFAM: ATP synthase (C/AC39) subunit YP_005044788.1 PFAM: ATP synthase (E/31 kDa) subunit YP_005044789.1 PFAM: ATP synthase subunit C YP_005044790.1 PFAM: V-type ATPase 116kDa subunit family YP_005044793.1 PFAM: Aldehyde dehydrogenase family; Iron-containing alcohol dehydrogenase YP_005044794.1 PFAM: Domain of unknown function DUF20; manually curated YP_005044795.1 PFAM: KWG Leptospira YP_005044796.1 PFAM: Prephenate dehydratase; ACT domain YP_005044798.1 PFAM: DHH family; DHHA1 domain YP_005044799.1 PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9; manually curated YP_005044800.1 PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase YP_005044801.1 PFAM: TilS substrate C-terminal domain; PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, C-terminal domain; tRNA(Ile)-lysidine synthetase, N-terminal domain; manually curated YP_005044802.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase YP_005044803.1 PFAM: FtsH Extracellular; Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH YP_005044804.1 PFAM: Thioesterase superfamily YP_005044806.1 PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, N-terminal domain; S-adenosylmethionine synthetase, central domain; TIGRFAM: S-adenosylmethionine synthetase YP_005044807.1 PFAM: Predicted membrane protein (DUF2339); manually curated YP_005044810.1 PFAM: Putative ATPase (DUF699); TIGRFAM: helicase, putative, RecD/TraA family YP_005044812.1 PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau YP_005044813.1 PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family YP_005044814.1 PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR YP_005044815.1 PFAM: Pyridoxamine 5'-phosphate oxidase YP_005044816.1 PFAM: Methyltransferase domain YP_005044817.1 PFAM: Acetyltransferase (GNAT) family YP_005044819.1 PFAM: Metallo-beta-lactamase superfamily YP_005044820.1 PFAM: LysE type translocator YP_005044821.1 PFAM: Methyltransferase domain YP_005044822.1 PFAM: Nucleotidyltransferase domain YP_005044823.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_005044826.1 PFAM: Bacterial regulatory protein, arsR family YP_005044827.1 PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein YP_005044828.1 PFAM: Low molecular weight phosphotyrosine protein phosphatase YP_005044829.1 PFAM: Predicted permease; manually curated YP_005044830.1 PFAM: Predicted permease YP_005044831.1 PFAM: Predicted permease YP_005044833.1 TIGRFAM: small redox-active disulfide protein 2 YP_005044834.1 PFAM: Protein of unknown function (DUF2703) YP_005044835.1 PFAM: ParA/MinD ATPase like; Anion-transporting ATPase YP_005044836.1 PFAM: Dinitrogenase iron-molybdenum cofactor YP_005044837.1 PFAM: 4Fe-4S binding domain; CobQ/CobB/MinD/ParA nucleotide binding domain YP_005044838.1 PFAM: 4Fe-4S binding domain; CobQ/CobB/MinD/ParA nucleotide binding domain YP_005044839.1 PFAM: Dinitrogenase iron-molybdenum cofactor YP_005044840.1 PFAM: Ferric uptake regulator family YP_005044841.1 PFAM: Protein of unknown function DUF134 YP_005044842.1 PFAM: Protein of unknown function (DUF820) YP_005044843.1 PFAM: S23 ribosomal protein YP_005044844.1 PFAM: StbA protein YP_005044847.1 PFAM: Sigma-70, region 4 YP_005044848.1 manually curated YP_005044849.1 PFAM: Stage V sporulation protein S (SpoVS) YP_005044850.1 PFAM: Helix-turn-helix YP_005044851.1 PFAM: Spo0E like sporulation regulatory protein; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005044853.1 PFAM: Reverse transcriptase (RNA-dependent DNA polymerase) YP_005044855.1 PFAM: HNH endonuclease YP_005044856.1 manually curated YP_005044857.1 PFAM: Radical SAM superfamily YP_005044858.1 PFAM: N-6 DNA Methylase; HsdM N-terminal domain YP_005044859.1 PFAM: Type I restriction modification DNA specificity domain; manually curated YP_005044860.1 PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit YP_005044861.1 PFAM: ADP-ribosylglycohydrolase; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase YP_005044866.1 PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; manually curated YP_005044867.1 PFAM: Protein of unknown function (DUF1444) YP_005044872.1 PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_005044877.1 PFAM: TnsA endonuclease N terminal; TnsA endonuclease C terminal YP_005044878.1 PFAM: Mu transposase, C-terminal; Integrase core domain YP_005044879.1 PFAM: Bacterial TniB protein YP_005044884.1 PFAM: Iron dependent repressor, N-terminal DNA binding domain; Cyclic nucleotide-binding domain YP_005044885.1 PFAM: Cupin domain YP_005044886.1 PFAM: Predicted permease YP_005044887.1 PFAM: Predicted permease YP_005044888.1 PFAM: LysE type translocator YP_005044890.1 PFAM: HD domain YP_005044891.1 PFAM: Protein of unknown function (DUF1232) YP_005044892.1 PFAM: Low molecular weight phosphotyrosine protein phosphatase; TIGRFAM: arsenate reductase, glutathione/glutaredoxin type YP_005044893.1 PFAM: Bacterial regulatory protein, arsR family YP_005044894.1 PFAM: Predicted permease YP_005044895.1 TIGRFAM: small redox-active disulfide protein 2 YP_005044896.1 PFAM: Protein of unknown function (DUF2703) YP_005044897.1 PFAM: Divergent AAA domain YP_005044899.1 PFAM: Methyltransferase domain YP_005044900.1 PFAM: Nucleotidyltransferase domain YP_005044901.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_005044903.1 PFAM: Protein of unknown function (DUF820) YP_005044905.1 PFAM: S23 ribosomal protein; TIGRFAM: TIGR02436 family protein YP_005044906.1 PFAM: StbA protein YP_005044910.1 PFAM: CHC2 zinc finger YP_005044911.1 PFAM: Stage V sporulation protein S (SpoVS) YP_005044912.1 PFAM: Spo0E like sporulation regulatory protein; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005044915.1 PFAM: Putative inner membrane protein (DUF1819) YP_005044916.1 PFAM: Domain of unknown function (DUF1788) YP_005044918.1 PFAM: N-6 DNA Methylase YP_005044919.1 PFAM: PglZ domain; TIGRFAM: TIGR02687 family protein YP_005044921.1 PFAM: Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: TIGR02688 family protein; conserved hypothetical protein YP_005044923.1 PFAM: ADP-ribosylglycohydrolase; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase YP_005044925.1 PFAM: Protein of unknown function (DUF1444) YP_005044928.1 PFAM: Helix-turn-helix YP_005044929.1 PFAM: Domain of unknown function (DUF955) YP_005044933.1 PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_005044935.1 PFAM: Helicase conserved C-terminal domain; HIRAN domain; DEAD/DEAH box helicase YP_005044941.1 PFAM: TnsA endonuclease N terminal; TnsA endonuclease C terminal YP_005044942.1 PFAM: Integrase core domain YP_005044943.1 manually curated YP_005044945.1 PFAM: Divergent AAA domain YP_005044947.1 PFAM: Glycosyl hydrolase family 10; Domain of unknown function (DUF1083); Carbohydrate binding domain; S-layer homology domain YP_005044948.1 PFAM: Protein of unknown function(DUF2089) YP_005044950.1 PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1 YP_005044951.1 PFAM: ZIP Zinc transporter YP_005044952.1 PFAM: yrdC domain; SUA5 domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein YP_005044953.1 PFAM: Low molecular weight phosphotyrosine protein phosphatase YP_005044954.1 PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family YP_005044955.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase YP_005044956.1 PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_005044957.1 PFAM: Glycosyl transferase family 4 YP_005044958.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; manually curated YP_005044960.1 PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) YP_005044961.1 PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c YP_005044962.1 PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b YP_005044963.1 PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 delta subunit YP_005044964.1 PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: proton translocating ATP synthase, F1 alpha subunit YP_005044965.1 PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 gamma subunit YP_005044966.1 PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 beta subunit YP_005044967.1 PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; ATP synthase, Delta/Epsilon chain, long alpha-helix domain; TIGRFAM: ATP synthase, F1 epsilon subunit (delta in mitochondria) YP_005044968.1 PFAM: S-layer homology domain YP_005044970.1 PFAM: S-layer homology domain YP_005044971.1 PFAM: Protein of unknown function (DUF1779) YP_005044972.1 PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_005044973.1 PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain; stage II sporulation protein D; manually curated YP_005044974.1 PFAM: Peptidase family M23 YP_005044975.1 PFAM: Transposase DDE domain; Transposase domain (DUF772); manually curated YP_005044976.1 PFAM: Dockerin type I repeat YP_005044977.1 PFAM: NlpC/P60 family YP_005044978.1 PFAM: Stage III sporulation protein D; TIGRFAM: sporulation transcriptional regulator SpoIIID YP_005044979.1 PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family YP_005044980.1 PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: fagellar hook-basal body proteins; manually curated YP_005044981.1 PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: fagellar hook-basal body proteins; flagellar basal-body rod protein FlgG, Gram-negative bacteria YP_005044982.1 PFAM: Rod binding protein YP_005044983.1 PFAM: FabA-like domain; TIGRFAM: beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ YP_005044984.1 PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; UDP-N-acetylmuramate--alanine ligase YP_005044985.1 PFAM: Phosphoribosyl transferase domain; Bacterial purine repressor, N-terminal; TIGRFAM: pur operon repressor, Bacillus subtilis type; xanthine phosphoribosyltransferase YP_005044986.1 PFAM: SpoVG YP_005044987.1 PFAM: Nucleotidyl transferase; TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase YP_005044988.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase YP_005044989.1 PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase YP_005044990.1 PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd) YP_005044991.1 PFAM: PPIC-type PPIASE domain YP_005044992.1 PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family; stage V sporulation protein T YP_005044993.1 PFAM: L,D-transpeptidase catalytic domain YP_005044994.1 PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein YP_005044995.1 PFAM: Bacterial DNA-binding protein YP_005044996.1 PFAM: S4 domain YP_005044997.1 PFAM: YabP family; TIGRFAM: sporulation protein YabP YP_005044998.1 PFAM: Spore cortex protein YabQ (Spore_YabQ); TIGRFAM: spore cortex biosynthesis protein YabQ YP_005044999.1 PFAM: Septum formation initiator; TIGRFAM: cell division protein FtsL YP_005045000.1 PFAM: S1 RNA binding domain YP_005045001.1 PFAM: Transposase IS200 like YP_005045002.1 PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family YP_005045003.1 PFAM: TrkA-N domain; TrkA-C domain YP_005045004.1 PFAM: Integrase core domain YP_005045005.1 PFAM: Transposase, Mutator family YP_005045006.1 PFAM: Transposase YP_005045007.1 PFAM: IS66 Orf2 like protein YP_005045010.1 PFAM: Cellulase (glycosyl hydrolase family 5); GDSL-like Lipase/Acylhydrolase; Dockerin type I repeat YP_005045012.1 PFAM: Acetyltransferase (GNAT) family YP_005045013.1 PFAM: Sugar-specific transcriptional regulator TrmB; Integrase core domain YP_005045014.1 PFAM: IstB-like ATP binding protein YP_005045015.1 PFAM: Dockerin type I repeat; Leucine Rich Repeat YP_005045016.1 PFAM: Predicted permease YP_005045017.1 PFAM: ABC transporter; TIGRFAM: putative bacteriocin export ABC transporter, lactococcin 972 group YP_005045018.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; manually curated YP_005045019.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005045020.1 PFAM: ABC transporter transmembrane region; ABC transporter YP_005045021.1 PFAM: ABC transporter transmembrane region; ABC transporter YP_005045022.1 PFAM: Cobalt uptake substrate-specific transmembrane region; TIGRFAM: cobalamin biosynthesis protein CbiM YP_005045023.1 PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ YP_005045024.1 PFAM: ABC transporter; TIGRFAM: cobalt transport protein ATP-binding subunit YP_005045025.1 manually curated YP_005045026.1 PFAM: Copper amine oxidase N-terminal domain; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_005045027.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_005045028.1 PFAM: ABC1 family; TIGRFAM: 2-polyprenylphenol 6-hydroxylase YP_005045029.1 PFAM: E1-E2 ATPase; Cation transporting ATPase, C-terminus; Cation transporter/ATPase, N-terminus; haloacid dehalogenase-like hydrolase; TIGRFAM: plasma-membrane calcium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; potassium and/or sodium efflux P-type ATPase, fungal-type; sarco/endoplasmic reticulum calcium-translocating P-type ATPase YP_005045030.1 PFAM: Bacterial regulatory proteins, tetR family; TIGRFAM: probable dihydroxyacetone kinase regulator YP_005045031.1 PFAM: GumN protein; S-layer homology domain YP_005045032.1 PFAM: Chagasin family peptidase inhibitor I42 YP_005045033.1 PFAM: DnaJ domain; DnaJ C terminal region YP_005045034.1 PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB YP_005045035.1 PFAM: DNA methylase; manually curated YP_005045036.1 PFAM: Domain of unknown function (DUF362) YP_005045037.1 PFAM: Stage II sporulation protein E (SpoIIE); TIGRFAM: stage II sporulation protein E YP_005045040.1 PFAM: Histidine kinase; HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005045041.1 PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family; manually curated YP_005045042.1 PFAM: Bacterial extracellular solute-binding protein YP_005045043.1 PFAM: PilZ domain YP_005045044.1 PFAM: Dihydrouridine synthase (Dus); TIGRFAM: putative TIM-barrel protein, nifR3 family YP_005045045.1 PFAM: Competence protein A; Cell division protein FtsA; TIGRFAM: type IV pilus assembly protein PilM YP_005045046.1 PFAM: Thioesterase superfamily YP_005045047.1 PFAM: NlpC/P60 family; Putative peptidoglycan binding domain YP_005045048.1 PFAM: Polysaccharide biosynthesis protein; TIGRFAM: stage V sporulation protein B YP_005045049.1 PFAM: Hsp20/alpha crystallin family YP_005045051.1 PFAM: UbiA prenyltransferase family YP_005045052.1 PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN YP_005045053.1 PFAM: Bacterial transferase hexapeptide (three repeats) YP_005045054.1 PFAM: Glycosyl transferases group 1 YP_005045056.1 PFAM: O-Antigen ligase YP_005045057.1 manually curated YP_005045058.1 PFAM: YjeF-related protein N-terminus; Carbohydrate kinase; TIGRFAM: yjeF N-terminal region; yjeF C-terminal region, hydroxyethylthiazole kinase-related YP_005045059.1 PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; TIGRFAM: alanine racemase YP_005045060.1 PFAM: Ribbon-helix-helix protein, copG family YP_005045061.1 PFAM: PemK-like protein YP_005045064.1 PFAM: Glycosyl transferase WecB/TagA/CpsF family; TIGRFAM: bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family YP_005045065.1 PFAM: Glycosyl transferases group 1; Polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB YP_005045066.1 PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179) YP_005045067.1 PFAM: Transketolase, thiamine diphosphate binding domain YP_005045068.1 PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain YP_005045069.1 PFAM: Bacterial Ig-like domain (group 2); Leucine Rich Repeat; S-layer homology domain; manually curated YP_005045070.1 PFAM: Bacterial Ig-like domain (group 2); Leucine Rich Repeat; S-layer homology domain; manually curated YP_005045071.1 PFAM: Bacterial Ig-like domain (group 2); Leucine Rich Repeat; S-layer homology domain; manually curated YP_005045072.1 PFAM: Bacterial Ig-like domain (group 2); Leucine Rich Repeat; S-layer homology domain; manually curated YP_005045073.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_005045074.1 PFAM: Type II/IV secretion system protein YP_005045076.1 PFAM: Bacterial type II secretion system protein F domain YP_005045077.1 TIGRFAM: archaeal flagellin N-terminal-like domain YP_005045078.1 PFAM: TadE-like protein YP_005045084.1 PFAM: Type IV leader peptidase family YP_005045085.1 PFAM: KWG Leptospira YP_005045086.1 PFAM: FHA domain; manually curated YP_005045087.1 PFAM: Protein phosphatase 2C YP_005045088.1 PFAM: Protein kinase domain YP_005045090.1 manually curated YP_005045091.1 manually curated YP_005045093.1 PFAM: ABC transporter YP_005045096.1 PFAM: ATPase family associated with various cellular activities (AAA) YP_005045097.1 PFAM: Protein of unknown function DUF58 YP_005045098.1 PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain YP_005045099.1 PFAM: von Willebrand factor type A domain; Protein of unknown function (DUF1355) YP_005045100.1 PFAM: Transposase, Mutator family YP_005045101.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005045102.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005045104.1 PFAM: ABC transporter YP_005045105.1 manually curated YP_005045106.1 manually curated YP_005045107.1 PFAM: Protein of unknown function (DUF567) YP_005045108.1 PFAM: Protein of unknown function (DUF3237) YP_005045109.1 PFAM: alpha/beta hydrolase fold YP_005045110.1 PFAM: Peptidase family U32 YP_005045111.1 PFAM: Bacterial regulatory proteins, lacI family; family YP_005045112.1 PFAM: Glycosyltransferase family 36; Putative carbohydrate binding domain; Glycosyltransferase 36 associated family YP_005045113.1 PFAM: Amylo-alpha-1,6-glucosidase; Glycosyltransferase family 36 YP_005045115.1 PFAM: Alpha-2-macroglobulin family; Dockerin type I repeat; Alpha-2-macroglobulin family N-terminal region YP_005045117.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005045118.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005045120.1 PFAM: UvrD/REP helicase YP_005045121.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold YP_005045122.1 PFAM: Xylose isomerase-like TIM barrel YP_005045123.1 PFAM: Bacterial regulatory proteins, lacI family; Bacterial extracellular solute-binding protein; family YP_005045124.1 PFAM: Acetyltransferase (GNAT) family YP_005045125.1 PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM) YP_005045128.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2326); manually curated YP_005045129.1 PFAM: Type I restriction modification DNA specificity domain YP_005045130.1 PFAM: Protein of unknown function DUF45 YP_005045131.1 PFAM: Transposase, Mutator family YP_005045134.1 PFAM: Acetyltransferase (GNAT) family YP_005045135.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase YP_005045136.1 PFAM: Aminotransferase class-III; TIGRFAM: ornithine aminotransferase; acetylornithine and succinylornithine aminotransferases YP_005045137.1 PFAM: PilZ domain YP_005045138.1 PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase YP_005045139.1 PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form YP_005045140.1 PFAM: ABC transporter; TOBE domain YP_005045142.1 PFAM: ABC transporter; TIGRFAM: cell division ATP-binding protein FtsE YP_005045143.1 PFAM: Predicted permease YP_005045144.1 PFAM: Peptidase family M23; manually curated YP_005045145.1 PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_005045146.1 PFAM: Small, acid-soluble spore proteins, alpha/beta type YP_005045147.1 PFAM: Methyltransferase domain YP_005045148.1 PFAM: 'Cold-shock' DNA-binding domain YP_005045149.1 PFAM: Hsp33 protein YP_005045150.1 PFAM: Integrase core domain YP_005045152.1 PFAM: Protein of unknown function (DUF2935) YP_005045154.1 PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: sulfate/thiosulfate-binding protein YP_005045155.1 PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: sulfate ABC transporter, permease protein; sulfate ABC transporter, permease protein CysT YP_005045156.1 PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: sulfate ABC transporter, permease protein CysW; sulfate ABC transporter, permease protein YP_005045157.1 PFAM: ABC transporter; TIGRFAM: sulfate ABC transporter, ATP-binding protein YP_005045159.1 PFAM: Putative Phosphatase; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YP_005045160.1 PFAM: 3-dehydroquinate synthase YP_005045161.1 PFAM: Prismane/CO dehydrogenase family; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit YP_005045162.1 manually curated YP_005045163.1 PFAM: Response regulator receiver domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005045165.1 PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_005045166.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain YP_005045167.1 manually curated YP_005045168.1 PFAM: N-acetylmuramoyl-L-alanine amidase; TIGRFAM: N-acetylmuramoyl-L-alanine amidase CwlD YP_005045169.1 PFAM: Copper amine oxidase N-terminal domain; Bacterial SH3 domain; LysM domain YP_005045170.1 PFAM: Leucine Rich Repeat YP_005045171.1 PFAM: Transposase YP_005045173.1 PFAM: Glycosyl hydrolases family 18; Bacterial SH3 domain; LysM domain YP_005045174.1 PFAM: CoA binding domain; Putative DNA-binding protein N-terminus YP_005045175.1 PFAM: ABC transporter YP_005045176.1 PFAM: Transposase YP_005045177.1 PFAM: Integrase core domain YP_005045178.1 PFAM: Prephenate dehydrogenase; ACT domain YP_005045179.1 PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase YP_005045180.1 PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_005045182.1 PFAM: Protein of unknown function (DUF1624) YP_005045183.1 PFAM: Firmicute transcriptional repressor of class III stress genes (CtsR) YP_005045184.1 PFAM: UvrB/uvrC motif YP_005045185.1 PFAM: ATP:guanido phosphotransferase, C-terminal catalytic domain YP_005045186.1 PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA) YP_005045189.1 PFAM: Transglutaminase-like superfamily YP_005045190.1 PFAM: Protein of unknown function DUF58 YP_005045191.1 PFAM: ATPase family associated with various cellular activities (AAA) YP_005045194.1 PFAM: Integrase core domain YP_005045195.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005045196.1 PFAM: DUF218 domain YP_005045197.1 PFAM: Glycosyl transferase family 2 YP_005045198.1 PFAM: Glycosyl hydrolases family 15; TIGRFAM: oligosaccharide amylase YP_005045199.1 PFAM: KaiC; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: DNA repair protein RadA YP_005045200.1 PFAM: DisA bacterial checkpoint controller nucleotide-binding; DisA bacterial checkpoint controller linker region YP_005045202.1 PFAM: CarD-like/TRCF domain YP_005045203.1 PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_005045204.1 PFAM: ABC transporter YP_005045205.1 PFAM: ABC-2 type transporter YP_005045206.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005045207.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005045208.1 PFAM: YgbB family; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_005045209.1 PFAM: Cysteine-rich secretory protein family; Bacterial SH3 domain; TIGRFAM: uncharacterized protein, YkwD family YP_005045210.1 PFAM: MatE; TIGRFAM: putative efflux protein, MATE family; manually curated YP_005045211.1 PFAM: Thymidylate synthase YP_005045212.1 PFAM: Protein of unknown function DUF84 YP_005045213.1 PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein YP_005045214.1 PFAM: Beta-lactamase YP_005045215.1 PFAM: Phosphopantetheine attachment site; NLI interacting factor-like phosphatase; TIGRFAM: FkbH-like domain; HAD-superfamily phosphatase, subfamily IIIC YP_005045216.1 PFAM: Glycosyltransferase family 28 N-terminal domain; Condensation domain; manually curated YP_005045217.1 PFAM: Integrase core domain YP_005045218.1 PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; manually curated YP_005045219.1 PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Nucleotidyl transferase; Bacterial transferase hexapeptide (three repeats); Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_005045220.1 PFAM: Putative peptidoglycan binding domain YP_005045221.1 PFAM: Copper amine oxidase N-terminal domain; D-alanyl-D-alanine carboxypeptidase YP_005045222.1 PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative YP_005045223.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_005045224.1 PFAM: Methyltransferase domain YP_005045225.1 PFAM: UV-endonuclease UvdE; TIGRFAM: UV damage endonuclease UvdE YP_005045228.1 PFAM: pfkB family carbohydrate kinase; TIGRFAM: tagatose-6-phosphate kinase; 1-phosphofructokinase; hexose kinase, 1-phosphofructokinase family YP_005045229.1 PFAM: Response regulator receiver domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005045230.1 PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region YP_005045231.1 manually curated YP_005045232.1 PFAM: Putative peptidoglycan binding domain; Cell Wall Hydrolase; TIGRFAM: spore cortex-lytic enzyme YP_005045237.1 PFAM: Cytochrome C biogenesis protein transmembrane region YP_005045238.1 PFAM: AhpC/TSA family YP_005045239.1 PFAM: Thioredoxin; Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase YP_005045240.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_005045241.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; SirA-like protein; DsrE/DsrF-like family; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Rhodanese-like domain; TIGRFAM: CoA-disulfide reductase YP_005045242.1 PFAM: Bacterial regulatory protein, arsR family YP_005045243.1 PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase YP_005045244.1 PFAM: Sporulation and spore germination YP_005045245.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005045247.1 PFAM: TM2 domain YP_005045250.1 manually curated YP_005045251.1 PFAM: S-layer homology domain; manually curated YP_005045252.1 PFAM: Bacterial protein of unknown function (DUF853) YP_005045253.1 PFAM: Putative cyclase YP_005045254.1 PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family YP_005045255.1 PFAM: D-ala D-ala ligase C-terminus; D-ala D-ala ligase N-terminus; TIGRFAM: D-alanine--D-alanine ligase YP_005045256.1 PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase YP_005045257.1 PFAM: Domain of unknown function (DUF1934) YP_005045258.1 PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase YP_005045260.1 PFAM: domain; Domain of unknown function; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric YP_005045261.1 PFAM: S-layer homology domain YP_005045262.1 PFAM: S-layer homology domain YP_005045263.1 PFAM: Putative peptidoglycan binding domain; Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_005045265.1 PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase YP_005045266.1 PFAM: Stage II sporulation protein R (spore_II_R); TIGRFAM: stage II sporulation protein R YP_005045267.1 PFAM: MgtC family YP_005045268.1 PFAM: Orn/Lys/Arg decarboxylase, C-terminal domain; Orn/Lys/Arg decarboxylase, major domain YP_005045269.1 PFAM: E1-E2 ATPase; Cation transporting ATPase, C-terminus; Cation transporter/ATPase, N-terminus; haloacid dehalogenase-like hydrolase; TIGRFAM: plasma-membrane calcium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; potassium and/or sodium efflux P-type ATPase, fungal-type; sarco/endoplasmic reticulum calcium-translocating P-type ATPase YP_005045270.1 PFAM: ABC transporter YP_005045272.1 PFAM: ABC-type uncharacterized transport system YP_005045276.1 PFAM: Colicin V production protein YP_005045277.1 PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase YP_005045278.1 PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type YP_005045279.1 PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type YP_005045280.1 PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial YP_005045281.1 PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG YP_005045282.1 PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11 YP_005045283.1 PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast YP_005045284.1 PFAM: Ribosomal protein L10 YP_005045285.1 PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12 YP_005045286.1 PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit YP_005045287.1 PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 3; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form YP_005045288.1 PFAM: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family YP_005045289.1 PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle YP_005045290.1 PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle; manually curated YP_005045291.1 PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_005045292.1 PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU YP_005045293.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005045294.1 manually curated YP_005045296.1 PFAM: Putative peptidoglycan binding domain; VanW like protein YP_005045297.1 PFAM: PTS HPr component phosphorylation site; TIGRFAM: Phosphotransferase System HPr (HPr) Family YP_005045298.1 PFAM: PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, N-terminal; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase YP_005045299.1 PFAM: UvrB/uvrC motif; UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit; manually curated YP_005045300.1 PFAM: Calcineurin-like phosphoesterase YP_005045301.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Bacterial trigger factor protein (TF); Bacterial trigger factor protein (TF) C-terminus; TIGRFAM: trigger factor YP_005045302.1 PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP YP_005045303.1 PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX) YP_005045305.1 PFAM: ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease LonB; lon-related putative ATP-dependent protease YP_005045306.1 PFAM: Glycoprotease family; TIGRFAM: putative glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family YP_005045307.1 PFAM: Radical SAM superfamily; PDZ domain (Also known as DHR or GLGF); Protein of unknown function (DUF512) YP_005045308.1 PFAM: Transglycosylase SLT domain YP_005045310.1 PFAM: Protein of unknown function (DUF402) YP_005045311.1 PFAM: PHP domain YP_005045312.1 PFAM: SmpB protein; TIGRFAM: SsrA-binding protein YP_005045317.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005045322.1 PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005045327.1 PFAM: Helix-turn-helix YP_005045332.1 PFAM: Transposase YP_005045333.1 PFAM: Integrase core domain YP_005045338.1 PFAM: Dockerin type I repeat; Carbohydrate binding module (family 6) YP_005045340.1 PFAM: DnaJ domain YP_005045341.1 PFAM: Transposase, Mutator family YP_005045344.1 PFAM: Transposase DDE domain; manually curated YP_005045345.1 PFAM: Protein of unknown function(DUF2089) YP_005045347.1 PFAM: ATP cone domain; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase YP_005045348.1 PFAM: Radical SAM superfamily; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein YP_005045349.1 PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_005045350.1 PFAM: Histidine kinase; Cache domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005045351.1 PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_005045352.1 PFAM: Acetyltransferase (GNAT) family YP_005045353.1 PFAM: Uncharacterised protein family (UPF0157) YP_005045358.1 PFAM: alpha/beta hydrolase fold YP_005045359.1 PFAM: Bacterial transcription activator, effector binding domain YP_005045363.1 PFAM: TROVE domain YP_005045366.1 PFAM: Methyltransferase domain; TIGRFAM: 3' terminal RNA ribose 2'-O-methyltransferase Hen1 YP_005045367.1 PFAM: Calcineurin-like phosphoesterase; Chromatin associated protein KTI12; TIGRFAM: polynucleotide kinase-phosphatase YP_005045368.1 PFAM: PHP domain; TIGRFAM: histidinol phosphate phosphatase HisJ family YP_005045369.1 PFAM: Transposase DDE domain; Transposase domain (DUF772); manually curated YP_005045372.1 PFAM: Transposase DDE domain; Transposase domain (DUF772); manually curated YP_005045373.1 PFAM: Metallo-beta-lactamase superfamily YP_005045374.1 PFAM: Putative redox-active protein (C_GCAxxG_C_C); TIGRFAM: C_GCAxxG_C_C family probable redox protein YP_005045375.1 PFAM: ADP-ribosylglycohydrolase YP_005045376.1 PFAM: Nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC YP_005045377.1 PFAM: Cytidylyltransferase; TIGRFAM: nicotinamide-nucleotide adenylyltransferase, NadR type; cytidyltransferase-related domain YP_005045378.1 PFAM: Peptidase propeptide and YPEB domain YP_005045379.1 PFAM: Manganese containing catalase YP_005045380.1 PFAM: domain; Domain of unknown function; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; manually curated YP_005045382.1 PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: biotin synthetase YP_005045383.1 PFAM: RNA 2'-phosphotransferase, Tpt1 / KptA family YP_005045385.1 PFAM: Metallo-beta-lactamase superfamily YP_005045386.1 PFAM: Putative esterase YP_005045387.1 PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005045388.1 PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005045389.1 PFAM: Transposase DDE domain YP_005045390.1 PFAM: Accessory gene regulator B; manually curated YP_005045393.1 PFAM: ABC transporter; TIGRFAM: gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit YP_005045394.1 TIGRFAM: lantibiotic protection ABC transporter permease subunit, MutE/EpiE family YP_005045395.1 TIGRFAM: lantibiotic protection ABC transporter permease subunit, MutG family YP_005045396.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005045397.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; manually curated YP_005045398.1 PFAM: Predicted nucleotidyltransferase YP_005045400.1 PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_005045401.1 PFAM: Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain YP_005045403.1 PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: methyltransferase, MtaA/CmuA family YP_005045404.1 PFAM: B12 binding domain YP_005045405.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; Predicted histidine kinase sensor domain YP_005045406.1 PFAM: CobW/HypB/UreG, nucleotide-binding domain; Cobalamin synthesis protein cobW C-terminal domain YP_005045407.1 PFAM: Methanol-cobalamin methyltransferase B subunit YP_005045408.1 PFAM: Protein of unknown function (DUF1638) YP_005045409.1 PFAM: Phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_005045410.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain YP_005045411.1 PFAM: Bacterial regulatory proteins, lacI family; family; manually curated YP_005045412.1 PFAM: pfkB family carbohydrate kinase; TIGRFAM: ribokinase YP_005045413.1 PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_005045414.1 PFAM: family YP_005045415.1 PFAM: Branched-chain amino acid transport system / permease component YP_005045416.1 PFAM: ABC transporter YP_005045417.1 PFAM: RbsD / FucU transport protein family YP_005045419.1 PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_005045421.1 PFAM: Uncharacterized protein family UPF0027 YP_005045422.1 PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family YP_005045423.1 PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: ribonuclease Z YP_005045424.1 PFAM: NADPH-dependent FMN reductase YP_005045425.1 PFAM: Region found in RelA / SpoT proteins YP_005045426.1 PFAM: Integrase core domain YP_005045427.1 PFAM: ABC transporter transmembrane region; ABC transporter YP_005045428.1 PFAM: ABC transporter transmembrane region; ABC transporter YP_005045429.1 PFAM: NPCBM/NEW2 domain; Copper amine oxidase N-terminal domain; manually curated YP_005045430.1 PFAM: Prismane/CO dehydrogenase family; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit YP_005045431.1 PFAM: NMT1/THI5 like YP_005045432.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005045433.1 PFAM: ABC transporter; TIGRFAM: nitrate transport ATP-binding subunits C and D YP_005045441.1 PFAM: Bacterial Ig-like domain (group 2) YP_005045442.1 PFAM: Transposase domain (DUF772) YP_005045443.1 PFAM: Transposase, Mutator family YP_005045444.1 PFAM: Tautomerase enzyme YP_005045445.1 PFAM: Flavin reductase like domain; conserved protein of DIM6/NTAB family YP_005045446.1 PFAM: MatE; TIGRFAM: putative efflux protein, MATE family YP_005045449.1 manually curated YP_005045450.1 PFAM: Protein of unknown function (DUF1557); TIGRFAM: intein N-terminal splicing region YP_005045456.1 PFAM: IstB-like ATP binding protein YP_005045457.1 PFAM: Sugar-specific transcriptional regulator TrmB; Integrase core domain; manually curated YP_005045458.1 PFAM: She9 / Mdm33 family YP_005045459.1 PFAM: HNH endonuclease YP_005045464.1 PFAM: SMI1 / KNR4 family YP_005045465.1 PFAM: Tetratricopeptide repeat YP_005045470.1 PFAM: FtsK/SpoIIIE family; manually curated YP_005045471.1 PFAM: Archaeal ATPase; FtsK/SpoIIIE family YP_005045474.1 PFAM: Nitroreductase family YP_005045475.1 PFAM: NUDIX domain; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1 YP_005045476.1 PFAM: Aromatic prenyltransferase Orf2 YP_005045477.1 PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family; TIGRFAM: peroxiredoxin YP_005045478.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: alkyl hydroperoxide reductase, F subunit YP_005045479.1 PFAM: Transposase IS200 like YP_005045480.1 PFAM: Transposase DDE domain; Transposase domain (DUF772); manually curated YP_005045481.1 PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_005045482.1 PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_005045483.1 PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain YP_005045484.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005045485.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005045486.1 PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family; TIGRFAM: peroxiredoxin YP_005045490.1 PFAM: Peptidase family M50 YP_005045491.1 manually curated YP_005045493.1 PFAM: Copper amine oxidase N-terminal domain YP_005045495.1 PFAM: Copper amine oxidase N-terminal domain YP_005045496.1 PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain YP_005045498.1 PFAM: IS66 Orf2 like protein YP_005045499.1 PFAM: Transposase YP_005045500.1 PFAM: Copper amine oxidase N-terminal domain YP_005045501.1 PFAM: Bacterial transcription activator, effector binding domain; Uncharacterized conserved protein (DUF2174) YP_005045502.1 PFAM: Acetyltransferase (GNAT) family YP_005045503.1 PFAM: Dockerin type I repeat; Glycosyl hydrolase family 26 YP_005045504.1 PFAM: Integrase core domain YP_005045505.1 PFAM: Transposase YP_005045506.1 PFAM: Penicillinase repressor YP_005045507.1 PFAM: Flavin containing amine oxidoreductase YP_005045508.1 PFAM: BNR/Asp-box repeat YP_005045509.1 PFAM: Glycine radical; Pyruvate formate lyase; TIGRFAM: formate acetyltransferase 1 YP_005045510.1 PFAM: Radical SAM superfamily; TIGRFAM: pyruvate formate-lyase 1-activating enzyme YP_005045511.1 PFAM: Formate/nitrite transporter; TIGRFAM: formate/nitrite transporter YP_005045513.1 PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB YP_005045514.1 PFAM: ZIP Zinc transporter YP_005045515.1 PFAM: Uracil DNA glycosylase superfamily YP_005045516.1 PFAM: Rubrerythrin YP_005045517.1 PFAM: Topoisomerase DNA binding C4 zinc finger; manually curated YP_005045518.1 PFAM: Transposase DDE domain; manually curated YP_005045519.1 PFAM: Prismane/CO dehydrogenase family; TIGRFAM: hydroxylamine reductase YP_005045520.1 PFAM: HD domain YP_005045521.1 PFAM: FMN-dependent dehydrogenase YP_005045522.1 PFAM: Xylose isomerase-like TIM barrel YP_005045525.1 PFAM: Dockerin type I repeat; Pectinesterase; Carbohydrate binding module (family 6) YP_005045526.1 PFAM: Viral (Superfamily 1) RNA helicase; TIGRFAM: exodeoxyribonuclease V, alpha subunit; helicase, putative, RecD/TraA family YP_005045527.1 PFAM: Cupin domain YP_005045529.1 PFAM: Pyruvate phosphate dikinase, PEP/pyruvate binding domain YP_005045530.1 PFAM: Iron-containing alcohol dehydrogenase YP_005045531.1 PFAM: Mannitol dehydrogenase C-terminal domain; Mannitol dehydrogenase Rossmann domain YP_005045532.1 PFAM: Glycosyl hydrolase family 67 C-terminus; Glycosyl hydrolase family 67 middle domain; Glycosyl hydrolase family 67 N-terminus YP_005045534.1 PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005045535.1 PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain YP_005045536.1 PFAM: Ferric uptake regulator family YP_005045537.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2325) YP_005045538.1 PFAM: Flavodoxin; TIGRFAM: flavodoxin, short chain YP_005045540.1 PFAM: AMP-binding enzyme; Xylose isomerase-like TIM barrel YP_005045541.1 PFAM: Nitroreductase family YP_005045543.1 PFAM: Transposase, Mutator family; manually curated YP_005045545.1 PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family YP_005045547.1 PFAM: Protein of unknown function, DUF624; manually curated YP_005045548.1 PFAM: GDSL-like Lipase/Acylhydrolase YP_005045549.1 PFAM: Acetyltransferase (GNAT) family YP_005045550.1 PFAM: Clostripain family YP_005045551.1 PFAM: TfoX C-terminal domain YP_005045553.1 PFAM: Nickel-dependent hydrogenase YP_005045554.1 PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; TIGRFAM: conserved hypothetical protein YP_005045555.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_005045556.1 PFAM: Major Facilitator Superfamily YP_005045557.1 PFAM: Dihydrouridine synthase (Dus) YP_005045558.1 PFAM: 'Cold-shock' DNA-binding domain YP_005045559.1 PFAM: Protein of unknown function (DUF1256); TIGRFAM: putative sporulation protein YyaC YP_005045560.1 PFAM: YbaK / prolyl-tRNA synthetases associated domain; TIGRFAM: ybaK/ebsC protein YP_005045561.1 PFAM: Putative methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase YP_005045562.1 PFAM: Protein of unknown function (DUF2809) YP_005045564.1 PFAM: Branched-chain amino acid transport protein (AzlD) YP_005045565.1 PFAM: AzlC protein YP_005045566.1 PFAM: Inorganic H+ pyrophosphatase; TIGRFAM: vacuolar-type H(+)-translocating pyrophosphatase YP_005045567.1 PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, beta subunit YP_005045568.1 PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit YP_005045569.1 PFAM: Phage derived protein Gp49-like (DUF891) YP_005045570.1 PFAM: Helix-turn-helix YP_005045571.1 manually curated YP_005045572.1 PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain YP_005045574.1 PFAM: CheW-like domain YP_005045575.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005045576.1 PFAM: MutS domain V YP_005045577.1 PFAM: MutS domain V YP_005045578.1 PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YP_005045579.1 PFAM: NADH dehydrogenase YP_005045580.1 PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit YP_005045581.1 PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit YP_005045582.1 PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Nickel-dependent hydrogenase YP_005045583.1 PFAM: 4Fe-4S binding domain YP_005045584.1 PFAM: Hydrogenase expression/synthesis hypA family; TIGRFAM: hydrogenase nickel insertion protein HypA YP_005045585.1 PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB YP_005045586.1 PFAM: HypF finger; yrdC domain; Acylphosphatase; TIGRFAM: [NiFe] hydrogenase maturation protein HypF YP_005045587.1 PFAM: HupF/HypC family; TIGRFAM: hydrogenase assembly chaperone HypC/HupF YP_005045588.1 PFAM: Hydrogenase formation hypA family; TIGRFAM: hydrogenase expression/formation protein HypD YP_005045589.1 PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: hydrogenase expression/formation protein HypE YP_005045590.1 PFAM: NUDIX domain YP_005045591.1 PFAM: Isochorismatase family YP_005045592.1 PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family; TIGRFAM: putative nicotinate phosphoribosyltransferase YP_005045593.1 PFAM: Phosphoenolpyruvate carboxykinase YP_005045594.1 manually curated YP_005045597.1 PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, beta subunit YP_005045598.1 PFAM: Copper amine oxidase N-terminal domain; Cell Wall Hydrolase YP_005045599.1 PFAM: Periplasmic solute binding protein family YP_005045600.1 PFAM: ABC transporter YP_005045601.1 PFAM: ABC 3 transport family YP_005045602.1 PFAM: Copper amine oxidase N-terminal domain; Transglutaminase-like superfamily; Leucine Rich Repeat YP_005045603.1 PFAM: ABC transporter YP_005045605.1 PFAM: PHP domain YP_005045606.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family YP_005045607.1 PFAM: Chain length determinant protein YP_005045609.1 PFAM: Polysaccharide biosynthesis protein YP_005045611.1 PFAM: short chain dehydrogenase YP_005045612.1 PFAM: Bacterial sugar transferase YP_005045613.1 PFAM: Transketolase, thiamine diphosphate binding domain YP_005045614.1 PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain YP_005045615.1 PFAM: Glycosyl transferase family 2 YP_005045616.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_005045617.1 manually curated YP_005045618.1 PFAM: O-Antigen ligase YP_005045619.1 PFAM: LICD Protein Family YP_005045620.1 PFAM: Nucleotidyl transferase YP_005045621.1 PFAM: Polysaccharide biosynthesis protein YP_005045622.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_005045623.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_005045624.1 PFAM: Acetyltransferase (GNAT) family YP_005045625.1 PFAM: Glycosyl transferase family 2 YP_005045626.1 PFAM: Polysaccharide biosynthesis protein; manually curated YP_005045627.1 PFAM: S-layer homology domain YP_005045628.1 PFAM: short chain dehydrogenase YP_005045629.1 PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family YP_005045630.1 PFAM: Endonuclease/Exonuclease/phosphatase family; manually curated YP_005045631.1 PFAM: Rhomboid family YP_005045632.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; family YP_005045633.1 PFAM: Transglutaminase-like superfamily YP_005045634.1 manually curated YP_005045635.1 PFAM: ATPase family associated with various cellular activities (AAA) YP_005045636.1 PFAM: Protein of unknown function DUF58 YP_005045639.1 PFAM: Desulfoferrodoxin; Helix-turn-helix YP_005045640.1 PFAM: MatE; TIGRFAM: putative efflux protein, MATE family YP_005045641.1 PFAM: ABC transporter YP_005045642.1 PFAM: NMT1/THI5 like YP_005045643.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005045644.1 PFAM: Domain of unknown function DUF77; TIGRFAM: uncharacterized protein, MTH1187 family YP_005045645.1 PFAM: S-layer homology domain YP_005045647.1 PFAM: Aldehyde dehydrogenase family; TIGRFAM: gamma-glutamyl phosphate reductase YP_005045648.1 PFAM: Dockerin type I repeat; manually curated YP_005045649.1 PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: isoleucyl-tRNA synthetase YP_005045650.1 PFAM: Anticodon binding domain; Prolyl-tRNA synthetase, C-terminal; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family I YP_005045651.1 PFAM: CYTH domain YP_005045652.1 PFAM: Dockerin type I repeat YP_005045654.1 PFAM: Cellulose binding domain YP_005045655.1 PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-I factor YP_005045656.1 PFAM: Glycosyl hydrolases family 8; Dockerin type I repeat YP_005045657.1 PFAM: Cellulose binding domain; Glycosyl hydrolase family 9; Dockerin type I repeat YP_005045658.1 PFAM: D-alanyl-D-alanine carboxypeptidase; Penicillin-binding protein 5, C-terminal domain YP_005045659.1 PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family YP_005045660.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005045661.1 PFAM: Dockerin type I repeat; CotH protein YP_005045662.1 PFAM: VTC domain YP_005045664.1 PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_005045665.1 PFAM: S-adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form YP_005045666.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_005045667.1 PFAM: S-adenosylmethionine-dependent methyltransferase YP_005045668.1 PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family YP_005045669.1 PFAM: Transposase DDE domain; Transposase domain (DUF772); manually curated YP_005045670.1 PFAM: Alpha-2-macroglobulin family; Alpha-2-macroglobulin family N-terminal region YP_005045671.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70 factor, TIGR02954 family; RNA polymerase sigma factor, sigma-70 family YP_005045672.1 PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type YP_005045673.1 PFAM: Aldo/keto reductase family; TIGRFAM: voltage-dependent potassium channel beta subunit, animal YP_005045674.1 PFAM: Protein of unknown function (DUF815) YP_005045676.1 PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, eukaryotic type YP_005045677.1 PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I YP_005045678.1 PFAM: SEC-C motif YP_005045680.1 PFAM: Sulfatase YP_005045682.1 PFAM: Protein of unknown function DUF45 YP_005045686.1 PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_005045687.1 PFAM: Aspartate-ammonia ligase; TIGRFAM: aspartate--ammonia ligase, AsnA-type YP_005045688.1 PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase YP_005045689.1 PFAM: Pyruvate kinase, barrel domain; PEP-utilising enzyme, mobile domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase YP_005045690.1 PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth) YP_005045692.1 PFAM: PspC domain; manually curated YP_005045693.1 manually curated YP_005045694.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_005045695.1 PFAM: Response regulator receiver domain YP_005045696.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005045701.1 PFAM: CheW-like domain YP_005045702.1 PFAM: ArgJ family; TIGRFAM: glutamate N-acetyltransferase/amino-acid acetyltransferase YP_005045703.1 PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La YP_005045706.1 PFAM: PRC-barrel domain; manually curated YP_005045707.1 PFAM: Putative peptidoglycan binding domain; VanW like protein; G5 domain YP_005045708.1 PFAM: Negative regulator of genetic competence (MecA) YP_005045710.1 PFAM: Maf-like protein; TIGRFAM: MAF protein YP_005045711.1 PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family YP_005045712.1 PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; manually curated YP_005045713.1 PFAM: rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD YP_005045714.1 PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2 YP_005045715.1 PFAM: Septum formation inhibitor MinC, C-terminal domain; TIGRFAM: septum site-determining protein MinC YP_005045716.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: septum site-determining protein MinD YP_005045717.1 PFAM: Septum formation topological specificity factor MinE; TIGRFAM: cell division topological specificity factor MinE YP_005045718.1 PFAM: MGS-like domain; TIGRFAM: methylglyoxal synthase YP_005045719.1 PFAM: Peptidase family M23 YP_005045720.1 PFAM: Peptidase family M50 YP_005045721.1 PFAM: Cellulase (glycosyl hydrolase family 5); Dockerin type I repeat YP_005045722.1 PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme YP_005045723.1 PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD YP_005045724.1 PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit YP_005045725.1 PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_005045726.1 PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_005045727.1 PFAM: PilZ domain YP_005045728.1 PFAM: HPr Serine kinase N terminus; HPr Serine kinase C-terminal domain; TIGRFAM: Hpr(Ser) kinase/phosphatase YP_005045729.1 PFAM: PHP domain YP_005045730.1 PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase YP_005045731.1 PFAM: P-loop ATPase protein family YP_005045732.1 PFAM: Uncharacterised protein family UPF0052; TIGRFAM: conserved hypothetical protein, cofD-related YP_005045733.1 PFAM: Amylo-alpha-1,6-glucosidase; Glycogen debranching enzyme N terminal; TIGRFAM: glycogen debranching enzyme, archaeal type, putative YP_005045734.1 PFAM: Sporulation Regulator WhiA N terminal; Sporulation Regulator WhiA C terminal domain; TIGRFAM: conserved hypothetical protein YP_005045735.1 PFAM: PTS HPr component phosphorylation site; TIGRFAM: Phosphotransferase System HPr (HPr) Family YP_005045736.1 PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; anti-sigma F factor antagonist YP_005045737.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: anti-sigma F factor YP_005045738.1 PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-F factor; RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; manually curated YP_005045739.1 PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AC YP_005045740.1 PFAM: Stage V sporulation protein AD (SpoVAD); TIGRFAM: stage V sporulation protein AD YP_005045741.1 PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AE YP_005045743.1 PFAM: CheC-like family YP_005045744.1 PFAM: SpoU rRNA Methylase family; TIGRFAM: rRNA methylase, putative, group 2 YP_005045745.1 PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: peptidase T-like protein YP_005045746.1 PFAM: Phosphofructokinase; TIGRFAM: phosphofructokinase YP_005045747.1 PFAM: Uncharacterized conserved protein (DUF2156) YP_005045748.1 PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I YP_005045749.1 PFAM: Phosphoglycerate kinase YP_005045750.1 PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase YP_005045751.1 PFAM: Metalloenzyme superfamily; BPG-independent PGAM N-terminus (iPGM_N); TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase YP_005045753.1 PFAM: F5/8 type C domain; Dockerin type I repeat; RHS Repeat; Protein of unknown function (DUF1557); TIGRFAM: RHS repeat-associated core domain; intein N-terminal splicing region; YD repeat (two copies) YP_005045754.1 manually curated YP_005045758.1 PFAM: Domain of unknown function (DUF1871) YP_005045759.1 TIGRFAM: YD repeat (two copies) YP_005045765.1 manually curated YP_005045769.1 PFAM: Transposase, Mutator family YP_005045771.1 PFAM: Transposase DDE domain YP_005045773.1 PFAM: GtrA-like protein YP_005045775.1 PFAM: Domain of unknown function (DUF362) YP_005045777.1 PFAM: Cellulose binding domain YP_005045778.1 PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase YP_005045779.1 PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit YP_005045780.1 PFAM: Transposase IS200 like YP_005045781.1 PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_005045782.1 PFAM: Ribonuclease B OB domain; RNB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases; manually curated YP_005045783.1 PFAM: Protein of unknown function (DUF523) YP_005045784.1 PFAM: PTS HPr component phosphorylation site YP_005045785.1 PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; radical SAM methylthiotransferase, MiaB/RimO family YP_005045786.1 PFAM: Bacterial protein of unknown function (DUF965) YP_005045787.1 PFAM: Aldo/keto reductase family; manually curated YP_005045788.1 PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: RNAse H-fold protein YqgF YP_005045789.1 PFAM: Protein of unknown function (DUF1292) YP_005045790.1 PFAM: Protein of unknown function (DUF3048) YP_005045791.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM family uncharacterized protein YP_005045792.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2344); TIGRFAM: radical SAM-linked protein YP_005045793.1 PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family YP_005045794.1 PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21 YP_005045795.1 PFAM: Protein of unknown function (DUF464) YP_005045796.1 PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27 YP_005045797.1 PFAM: GTPase of unknown function; GTP1/OBG; Domain of unknown function (DUF1967); TIGRFAM: Obg family GTPase CgtA; Obg family GTPase CgtA, C-terminal extension; small GTP-binding protein domain YP_005045799.1 PFAM: CRS1 / YhbY (CRM) domain; TIGRFAM: putative RNA-binding protein, YhbY family YP_005045801.1 TIGRFAM: iron-sulfur cluster binding protein, putative YP_005045802.1 PFAM: Response regulator receiver domain YP_005045803.1 PFAM: Sulfatase YP_005045804.1 PFAM: Polysaccharide deacetylase YP_005045805.1 manually curated YP_005045807.1 PFAM: Lyase; TIGRFAM: argininosuccinate lyase YP_005045808.1 PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase YP_005045809.1 PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC YP_005045810.1 PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit YP_005045811.1 PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit YP_005045812.1 PFAM: Competence protein A; Cell division protein FtsA; TIGRFAM: type IV pilus assembly protein PilM YP_005045813.1 PFAM: Copper amine oxidase N-terminal domain; N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes YP_005045814.1 PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase YP_005045815.1 PFAM: Sporulation and spore germination YP_005045816.1 PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH YP_005045817.1 PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family YP_005045818.1 PFAM: Protein of unknown function (DUF1294) YP_005045820.1 PFAM: UvrD/REP helicase; manually curated YP_005045822.1 PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ YP_005045823.1 PFAM: Protein phosphatase 2C YP_005045824.1 PFAM: Protein kinase domain YP_005045825.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005045826.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005045827.1 PFAM: Domain of unknown function (DUF3502); Bacterial extracellular solute-binding protein YP_005045828.1 PFAM: SEC-C motif YP_005045829.1 PFAM: FeoA domain YP_005045830.1 PFAM: NAD dependent epimerase/dehydratase family YP_005045831.1 PFAM: Transposase DDE domain; Transposase domain (DUF772); manually curated YP_005045832.1 PFAM: Stage II sporulation protein E (SpoIIE); TIGRFAM: PAS domain S-box YP_005045833.1 PFAM: Rubrerythrin YP_005045836.1 PFAM: Tetratricopeptide repeat YP_005045837.1 PFAM: Ribulose bisphosphate carboxylase large chain, catalytic domain YP_005045838.1 PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain YP_005045839.1 PFAM: Transketolase, thiamine diphosphate binding domain YP_005045840.1 PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase YP_005045841.1 PFAM: ANTAR domain YP_005045842.1 PFAM: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; TIGRFAM: nitrogenase iron protein YP_005045843.1 PFAM: Nitrogen regulatory protein P-II YP_005045844.1 PFAM: Nitrogen regulatory protein P-II YP_005045845.1 PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase component I, alpha chain; nitrogenase molybdenum-iron protein alpha chain YP_005045846.1 PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase molybdenum-iron protein beta chain YP_005045847.1 PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifE YP_005045848.1 PFAM: Radical SAM superfamily; Nitrogenase component 1 type Oxidoreductase; Dinitrogenase iron-molybdenum cofactor; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB YP_005045849.1 PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit YP_005045850.1 PFAM: HMGL-like YP_005045851.1 PFAM: HMGL-like YP_005045852.1 PFAM: NAD synthase; Carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase YP_005045853.1 PFAM: Transposase, Mutator family YP_005045854.1 PFAM: IstB-like ATP binding protein YP_005045855.1 PFAM: Integrase core domain YP_005045856.1 PFAM: Predicted permease YP_005045857.1 PFAM: ABC transporter YP_005045860.1 PFAM: Hemerythrin HHE cation binding domain; TIGRFAM: hemerythrin-like metal-binding domain YP_005045861.1 PFAM: Nitrogenase component 1 type Oxidoreductase YP_005045862.1 PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: light-independent protochlorophyllide reductase, B subunit YP_005045863.1 PFAM: NMT1/THI5 like YP_005045864.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005045867.1 PFAM: Sulfatase YP_005045868.1 PFAM: Radical SAM superfamily; HemN C-terminal region YP_005045869.1 PFAM: haloacid dehalogenase-like hydrolase YP_005045870.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005045871.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_005045872.1 PFAM: S-layer homology domain; Subtilase family YP_005045874.1 PFAM: Dockerin type I repeat YP_005045875.1 PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein YP_005045876.1 PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: molybdate ABC transporter, permease protein YP_005045877.1 PFAM: ABC transporter; manually curated YP_005045878.1 PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; peptide chain release factor 3 YP_005045879.1 PFAM: Phosphoribulokinase / Uridine kinase family YP_005045880.1 PFAM: DRTGG domain YP_005045881.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005045882.1 PFAM: Iron only hydrogenase large subunit, C-terminal domain; Putative Fe-S cluster; 4Fe-4S binding domain YP_005045883.1 PFAM: DRTGG domain YP_005045884.1 PFAM: PHP domain YP_005045885.1 PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit YP_005045886.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005045888.1 PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; 4Fe-4S binding domain; Respiratory-chain NADH dehydrogenase 24 Kd subunit; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain YP_005045889.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; Iron only hydrogenase large subunit, C-terminal domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Iron hydrogenase small subunit; TIGRFAM: hydrogenase, Fe-only YP_005045890.1 PFAM: NUDIX domain; TIGRFAM: mutator mutT protein YP_005045891.1 PFAM: Nitroreductase family YP_005045892.1 PFAM: Flavin reductase like domain; conserved protein of DIM6/NTAB family YP_005045893.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_005045894.1 PFAM: Aminotransferase class I and II; TIGRFAM: LL-diaminopimelate aminotransferase YP_005045895.1 PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit YP_005045896.1 PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial YP_005045897.1 PFAM: Small, acid-soluble spore proteins, alpha/beta type YP_005045898.1 PFAM: Phosphoglucose isomerase YP_005045899.1 PFAM: Calcineurin-like phosphoesterase; manually curated YP_005045900.1 PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005045902.1 PFAM: Domain of unknown function (DUF377) YP_005045903.1 PFAM: Nucleotidyl transferase YP_005045904.1 PFAM: Glycosyl transferases group 1 YP_005045906.1 PFAM: Phosphomannose isomerase type I; TIGRFAM: mannose-6-phosphate isomerase, class I YP_005045907.1 PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form YP_005045908.1 PFAM: short chain dehydrogenase YP_005045909.1 PFAM: HTH domain YP_005045910.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005045911.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005045913.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB YP_005045914.1 PFAM: NADPH-dependent FMN reductase; manually curated YP_005045915.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_005045916.1 PFAM: PilZ domain YP_005045918.1 PFAM: domain YP_005045919.1 PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_005045920.1 PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family YP_005045921.1 PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal YP_005045923.1 PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain YP_005045924.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_005045926.1 PFAM: SigmaW regulon antibacterial YP_005045927.1 PFAM: NfeD-like YP_005045928.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005045929.1 PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II YP_005045930.1 PFAM: Protein of unknown function; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; HAD-superfamily hydrolase, subfamily IIIA; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 YP_005045931.1 PFAM: Shikimate dehydrogenase substrate binding domain; Shikimate / quinate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase YP_005045933.1 PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family YP_005045934.1 PFAM: Late competence development protein ComFB YP_005045935.1 PFAM: Xylose isomerase-like TIM barrel YP_005045936.1 PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II YP_005045937.1 PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain YP_005045938.1 PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P YP_005045940.1 TIGRFAM: probable DNA metabolism protein YP_005045942.1 PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain YP_005045943.1 PFAM: ACT domain YP_005045944.1 PFAM: Uncharacterized ACR (DUF711) YP_005045945.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005045946.1 PFAM: Beta propeller domain; manually curated YP_005045947.1 PFAM: Protein of unknown function (DUF990) YP_005045948.1 PFAM: Protein of unknown function (DUF990) YP_005045949.1 PFAM: ABC transporter YP_005045953.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain YP_005045955.1 PFAM: Peptidase family M23 YP_005045956.1 PFAM: Manganese containing catalase YP_005045959.1 PFAM: Carbon-nitrogen hydrolase YP_005045960.1 PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle YP_005045961.1 PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; Polyribonucleotide nucleotidyltransferase, RNA binding domain; TIGRFAM: polyribonucleotide nucleotidyltransferase YP_005045962.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_005045963.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; TIGRFAM: dipicolinic acid synthetase, A subunit YP_005045964.1 PFAM: Flavoprotein; TIGRFAM: dipicolinic acid synthetase, B subunit YP_005045965.1 PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein; TIGRFAM: type IV-A pilus assembly ATPase PilB; general secretory pathway protein E YP_005045966.1 PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT YP_005045967.1 PFAM: Bacterial type II secretion system protein F domain YP_005045968.1 PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_005045969.1 TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_005045970.1 PFAM: Fimbrial assembly protein (PilN) YP_005045972.1 TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_005045974.1 manually curated YP_005045975.1 PFAM: Clp protease YP_005045977.1 PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; manually curated YP_005045978.1 PFAM: Domain of unknown function (DUF3362); Radical SAM superfamily; Radical SAM N-terminal; TIGRFAM: uncharacterized radical SAM protein YgiQ; manually curated YP_005045979.1 PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; manually curated YP_005045981.1 PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG YP_005045982.1 PFAM: Calcineurin-like phosphoesterase; TIGRFAM: metallophosphoesterase, MG_246/BB_0505 family YP_005045983.1 PFAM: Stage V sporulation protein S (SpoVS) YP_005045984.1 PFAM: Copper amine oxidase N-terminal domain YP_005045985.1 PFAM: von Willebrand factor type A domain YP_005045986.1 PFAM: Transposase YP_005045987.1 PFAM: IS66 Orf2 like protein YP_005045988.1 PFAM: Transposase IS66 family YP_005045991.1 PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) YP_005045992.1 PFAM: MatE; TIGRFAM: putative efflux protein, MATE family YP_005045994.1 PFAM: Protein of unknown function (DUF3343) YP_005045995.1 PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase YP_005045996.1 PFAM: Bacterial protein of unknown function (DUF881) YP_005045997.1 manually curated YP_005045998.1 PFAM: Carbohydrate binding domain (family 25) YP_005045999.1 PFAM: Nucleotidyl transferase; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_005046001.1 PFAM: Bacterial protein of unknown function (DUF881) YP_005046002.1 PFAM: Bacterial protein of unknown function (DUF881) YP_005046003.1 PFAM: Polysaccharide deacetylase; TIGRFAM: delta-lactam-biosynthetic de-N-acetylase YP_005046004.1 PFAM: YabP family; TIGRFAM: sporulation protein YqfC YP_005046005.1 PFAM: Putative stage IV sporulation protein YqfD; TIGRFAM: sporulation protein YqfD; manually curated YP_005046006.1 PFAM: PhoH-like protein YP_005046007.1 PFAM: 7TM-HD extracellular; HD domain; 7TM receptor with intracellular HD hydrolase; TIGRFAM: uncharacterized domain HDIG; manually curated YP_005046008.1 PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family YP_005046009.1 PFAM: GTPase of unknown function; KH domain; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain YP_005046011.1 PFAM: Recombination protein O C terminal; Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO YP_005046012.1 PFAM: PilZ domain YP_005046013.1 PFAM: Aminotransferase class-V YP_005046014.1 PFAM: Thiamine biosynthesis protein (ThiI); THUMP domain; TIGRFAM: thiazole biosynthesis/tRNA modification protein ThiI YP_005046015.1 PFAM: Putative peptidoglycan binding domain; G5 domain; VanW like protein YP_005046016.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2225) YP_005046017.1 PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain YP_005046018.1 PFAM: O-Antigen ligase YP_005046019.1 PFAM: Serine hydroxymethyltransferase YP_005046020.1 PFAM: Transglutaminase-like superfamily YP_005046021.1 PFAM: Protein of unknown function DUF58 YP_005046022.1 PFAM: ATPase family associated with various cellular activities (AAA) YP_005046023.1 PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: L-lactate dehydrogenase YP_005046024.1 PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain YP_005046025.1 PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN YP_005046026.1 PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA YP_005046027.1 PFAM: SPFH domain / Band 7 family; TIGRFAM: HflK protein YP_005046028.1 PFAM: SPFH domain / Band 7 family; TIGRFAM: HflC protein YP_005046029.1 PFAM: Bacillus/Clostridium GerA spore germination protein; manually curated YP_005046030.1 PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease) YP_005046031.1 PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family YP_005046033.1 PFAM: CoA enzyme activase uncharacterised domain (DUF2229) YP_005046035.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; manually curated YP_005046036.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase YP_005046037.1 PFAM: RNase H YP_005046038.1 PFAM: NUDIX domain YP_005046039.1 PFAM: Integral membrane protein DUF95; TIGRFAM: stage II sporulation protein M YP_005046040.1 PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: tyrosine recombinase XerD YP_005046041.1 PFAM: Metalloenzyme superfamily; TIGRFAM: phosphopentomutase YP_005046042.1 PFAM: Glycosyl transferase family, a/b domain; Pyrimidine nucleoside phosphorylase C-terminal domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: pyrimidine-nucleoside phosphorylase YP_005046043.1 PFAM: D-alanyl-D-alanine carboxypeptidase; Penicillin-binding protein 5, C-terminal domain YP_005046044.1 PFAM: Membrane domain of glycerophosphoryl diester phosphodiesterase; manually curated YP_005046047.1 PFAM: ATPase family associated with various cellular activities (AAA) YP_005046048.1 PFAM: Protein of unknown function DUF58 YP_005046049.1 PFAM: RDD family; manually curated YP_005046050.1 PFAM: Integrase core domain YP_005046051.1 PFAM: Domain of unknown function (DUF303); Dockerin type I repeat; Carbohydrate binding module (family 6); Glycosyl hydrolases family 11 YP_005046052.1 PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase YP_005046053.1 PFAM: Peptidase family M28 YP_005046054.1 PFAM: DHH family; CBS domain; Poly A polymerase head domain YP_005046055.1 PFAM: Peptidase family M50 YP_005046056.1 PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase; manually curated YP_005046057.1 PFAM: ScpA/B protein YP_005046058.1 PFAM: Putative transcriptional regulators (Ypuh-like); TIGRFAM: segregation and condensation protein B YP_005046059.1 PFAM: Protein of unknown function (DUF2953); manually curated YP_005046060.1 PFAM: Sporulation protein YtfJ (Spore_YtfJ); TIGRFAM: sporulation protein YtfJ; manually curated YP_005046061.1 PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase YP_005046062.1 PFAM: Domain of Unknown Function (DUF1540) YP_005046063.1 PFAM: Spermine/spermidine synthase; TIGRFAM: spermidine synthase YP_005046064.1 PFAM: Arginase family; TIGRFAM: agmatinase YP_005046065.1 PFAM: Putative rRNA methylase YP_005046066.1 PFAM: PilZ domain YP_005046067.1 PFAM: Carboxyl transferase domain YP_005046069.1 PFAM: Biotin-requiring enzyme YP_005046070.1 PFAM: HMGL-like; Conserved carboxylase domain; TIGRFAM: oxaloacetate decarboxylase alpha subunit YP_005046072.1 PFAM: Fibronectin type III domain YP_005046073.1 PFAM: Kelch motif; RHS Repeat; TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies) YP_005046076.1 PFAM: Transposase IS66 family YP_005046077.1 PFAM: IS66 Orf2 like protein YP_005046078.1 PFAM: Transposase YP_005046080.1 PFAM: Mu-like prophage protein Com YP_005046081.1 PFAM: Poxvirus D5 protein-like; D5 N terminal like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain YP_005046082.1 PFAM: Phage capsid family YP_005046084.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005046086.1 PFAM: Transposase YP_005046087.1 PFAM: IS66 Orf2 like protein YP_005046089.1 PFAM: RHS Repeat; TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies) YP_005046091.1 PFAM: Macro domain YP_005046095.1 PFAM: Transposase YP_005046096.1 PFAM: IS66 Orf2 like protein YP_005046104.1 PFAM: Transposase DDE domain YP_005046105.1 PFAM: Glycosyl hydrolase family 10; Carbohydrate binding domain; Domain of unknown function (DUF1083); S-layer homology domain YP_005046107.1 PFAM: IS66 Orf2 like protein YP_005046108.1 PFAM: Transposase YP_005046109.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005046110.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain; CHASE3 domain YP_005046111.1 PFAM: CHASE3 domain YP_005046112.1 PFAM: Domain of unknown function (DUF303); Dockerin type I repeat YP_005046113.1 PFAM: Acetyltransferase (GNAT) family YP_005046114.1 PFAM: Flavin reductase like domain; conserved protein of DIM6/NTAB family YP_005046115.1 PFAM: Tetratricopeptide repeat YP_005046116.1 PFAM: Dockerin type I repeat YP_005046117.1 PFAM: ThiF family YP_005046119.1 PFAM: ABC transporter YP_005046120.1 PFAM: Bacterial regulatory proteins, gntR family YP_005046121.1 PFAM: Protein of unknown function (DUF1538) YP_005046124.1 PFAM: Dockerin type I repeat; PKD domain YP_005046125.1 PFAM: Transglycosylase SLT domain YP_005046126.1 PFAM: Cellulose binding domain; Glycosyl hydrolase family 9; Dockerin type I repeat YP_005046127.1 PFAM: Cellulose binding domain; Glycosyl hydrolase family 9; Dockerin type I repeat YP_005046129.1 TIGRFAM: putative iron-only hydrogenase system regulator YP_005046130.1 PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: iron-only hydrogenase maturation rSAM protein HydG; thiazole biosynthesis protein ThiH YP_005046131.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005046132.1 PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; Protein of unknown function (DUF3343); TIGRFAM: iron-only hydrogenase maturation rSAM protein HydE YP_005046133.1 PFAM: Lyase; Fumarase C C-terminus; TIGRFAM: aspartate ammonia-lyase YP_005046134.1 PFAM: GTPase of unknown function; TIGRFAM: hydrogenase maturation GTPase HydF; small GTP-binding protein domain YP_005046135.1 PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase family protein YP_005046136.1 PFAM: Competence protein A; Cell division protein FtsA; TIGRFAM: type IV pilus assembly protein PilM YP_005046140.1 PFAM: PTS system sugar-specific permease component YP_005046142.1 PFAM: ABC transporter YP_005046143.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005046144.1 PFAM: NMT1/THI5 like YP_005046146.1 PFAM: Subtilase family YP_005046147.1 PFAM: Protein of unknown function (DUF1557); Fibronectin type III domain; CARDB; TIGRFAM: intein N-terminal splicing region; intein C-terminal splicing region YP_005046152.1 PFAM: Protein of unknown function (DUF1557); TIGRFAM: intein N-terminal splicing region YP_005046155.1 PFAM: Integrase core domain YP_005046156.1 PFAM: IstB-like ATP binding protein YP_005046160.1 PFAM: IS66 Orf2 like protein YP_005046161.1 PFAM: Transposase IS66 family; manually curated YP_005046163.1 PFAM: Protein of unknown function (DUF1557); TIGRFAM: intein N-terminal splicing region YP_005046170.1 PFAM: Transposase, Mutator family YP_005046172.1 PFAM: IS66 Orf2 like protein YP_005046173.1 PFAM: Transposase YP_005046176.1 PFAM: Transposase YP_005046177.1 PFAM: Integrase core domain YP_005046178.1 PFAM: Integrase core domain YP_005046185.1 PFAM: Protein of unknown function (DUF1557); TIGRFAM: intein N-terminal splicing region YP_005046187.1 PFAM: Transposase YP_005046188.1 PFAM: IS66 Orf2 like protein YP_005046189.1 PFAM: Transposase IS66 family; Insertion element protein YP_005046191.1 PFAM: Protein of unknown function (DUF1557); TIGRFAM: intein N-terminal splicing region YP_005046195.1 PFAM: Protein of unknown function (DUF1557); TIGRFAM: intein N-terminal splicing region YP_005046198.1 PFAM: Protein of unknown function (DUF1557); TIGRFAM: intein N-terminal splicing region YP_005046199.1 PFAM: Sugar-specific transcriptional regulator TrmB; Integrase core domain YP_005046200.1 PFAM: IstB-like ATP binding protein YP_005046202.1 PFAM: Trans-2-enoyl-CoA reductase catalytic region; NAD(P)H binding domain of trans-2-enoyl-CoA reductase; Enoyl reductase FAD binding domain YP_005046204.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain YP_005046207.1 PFAM: Copper amine oxidase N-terminal domain YP_005046208.1 manually curated YP_005046209.1 manually curated YP_005046210.1 PFAM: 3D domain YP_005046211.1 PFAM: RecX family YP_005046213.1 PFAM: Domain of unknown function DUF YP_005046214.1 PFAM: N-acetylmuramoyl-L-alanine amidase YP_005046215.1 PFAM: Metallo-beta-lactamase superfamily YP_005046216.1 PFAM: Tetratricopeptide repeat YP_005046217.1 PFAM: Fibronectin type III domain YP_005046219.1 PFAM: Nucleotidyltransferase domain YP_005046220.1 PFAM: Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_005046221.1 PFAM: Methyltransferase domain YP_005046222.1 PFAM: M42 glutamyl aminopeptidase YP_005046223.1 PFAM: M42 glutamyl aminopeptidase YP_005046224.1 PFAM: M42 glutamyl aminopeptidase YP_005046226.1 PFAM: DUF218 domain YP_005046227.1 PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain YP_005046228.1 PFAM: Methyltransferase domain YP_005046229.1 PFAM: Enoyl-CoA hydratase/isomerase family YP_005046231.1 PFAM: Group II intron, maturase-specific domain; Reverse transcriptase (RNA-dependent DNA polymerase) YP_005046233.1 PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM) YP_005046234.1 PFAM: Type I restriction modification DNA specificity domain YP_005046236.1 PFAM: Domain of unknown function (DUF3387); Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; manually curated YP_005046238.1 PFAM: Helicase conserved C-terminal domain; Domain of unknown function (DUF1998); DEAD/DEAH box helicase YP_005046239.1 PFAM: Transposase IS200 like YP_005046240.1 PFAM: Integrase core domain YP_005046241.1 PFAM: IstB-like ATP binding protein YP_005046243.1 PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstC; phosphate ABC transporter, permease protein PstA YP_005046244.1 PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA YP_005046245.1 PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter, ATP-binding protein YP_005046246.1 PFAM: PhoU domain; TIGRFAM: phosphate transport system regulatory protein PhoU YP_005046247.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005046248.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_005046251.1 PFAM: ABC transporter YP_005046253.1 PFAM: Helix-turn-helix; SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family YP_005046254.1 PFAM: Aldo/keto reductase family YP_005046255.1 PFAM: AMP-binding enzyme YP_005046256.1 PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric YP_005046257.1 PFAM: Branched-chain amino acid transport system / permease component YP_005046258.1 PFAM: Branched-chain amino acid transport system / permease component YP_005046259.1 PFAM: ABC transporter YP_005046260.1 PFAM: Radical SAM superfamily; TIGRFAM: glycine radical enzyme activase, YjjW family YP_005046261.1 PFAM: Protein of unknown function (DUF3029); TIGRFAM: glycine radical enzyme, YjjI family YP_005046262.1 PFAM: Basic membrane protein YP_005046263.1 PFAM: Phosphorylase superfamily; TIGRFAM: purine-nucleoside phosphorylase, family 1 (deoD) YP_005046264.1 PFAM: Phosphorylase superfamily YP_005046265.1 PFAM: AIG2-like family YP_005046266.1 PFAM: S-adenosylmethionine-dependent methyltransferase YP_005046267.1 PFAM: domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit YP_005046268.1 PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, beta subunit YP_005046269.1 PFAM: AMP-binding enzyme; TIGRFAM: phenylacetate-CoA ligase YP_005046270.1 PFAM: ACT domain YP_005046271.1 PFAM: MgsA AAA+ ATPase C terminal; Holliday junction DNA helicase ruvB N-terminus YP_005046274.1 PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; radical SAM methylthiotransferase, MiaB/RimO family YP_005046275.1 PFAM: Protein of unknown function (DUF964) YP_005046276.1 PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS YP_005046277.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; MutL C terminal dimerisation domain; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL; manually curated YP_005046278.1 PFAM: IPP transferase; TIGRFAM: tRNA dimethylallyltransferase YP_005046279.1 PFAM: LSM domain; TIGRFAM: RNA chaperone Hfq YP_005046280.1 PFAM: LexA DNA binding domain; Peptidase S24-like; TIGRFAM: SOS regulatory protein LexA; manually curated YP_005046281.1 PFAM: LysM domain YP_005046282.1 PFAM: TadE-like protein YP_005046283.1 manually curated YP_005046284.1 PFAM: TadE-like protein YP_005046285.1 PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1 YP_005046286.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005046288.1 PFAM: Protein of unknown function (DUF2953); manually curated YP_005046289.1 PFAM: Sporulation protein YtfJ (Spore_YtfJ) YP_005046292.1 PFAM: Putative helix-turn-helix protein, YlxM / p13 like; manually curated YP_005046293.1 PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle-docking protein FtsY; signal recognition particle protein YP_005046294.1 PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16 YP_005046295.1 PFAM: KH domain YP_005046296.1 PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM YP_005046297.1 PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase YP_005046298.1 PFAM: Copper amine oxidase N-terminal domain YP_005046299.1 PFAM: Chromate transporter YP_005046300.1 PFAM: Chromate transporter YP_005046302.1 PFAM: MatE; TIGRFAM: putative efflux protein, MATE family YP_005046304.1 PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit YP_005046305.1 PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_005046309.1 PFAM: Chorismate mutase type II YP_005046311.1 PFAM: S-layer homology domain; PKD domain; Fibronectin type III domain YP_005046312.1 PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain; manually curated YP_005046313.1 PFAM: VanW like protein YP_005046315.1 PFAM: Protein of unknown function (DUF3298); manually curated YP_005046316.1 PFAM: Shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, N-terminal domain; TIGRFAM: glutamyl-tRNA reductase; manually curated YP_005046317.1 PFAM: TrkA-N domain; TIGRFAM: siroheme synthase, N-terminal domain YP_005046318.1 PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase YP_005046319.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; Uroporphyrinogen-III synthase HemD; TIGRFAM: uroporphyrin-III C-methyltransferase YP_005046320.1 PFAM: Delta-aminolevulinic acid dehydratase YP_005046321.1 PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase YP_005046322.1 PFAM: CbiX YP_005046323.1 PFAM: chorismate binding enzyme YP_005046324.1 PFAM: Aminotransferase class IV YP_005046326.1 PFAM: Integrase core domain YP_005046327.1 PFAM: IstB-like ATP binding protein YP_005046328.1 PFAM: Dockerin type I repeat; O-Glycosyl hydrolase family 30 YP_005046329.1 PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase YP_005046330.1 PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_005046332.1 PFAM: Cohesin domain YP_005046333.1 PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantethiene--protein transferase domain YP_005046335.1 PFAM: Bacterial regulatory proteins, gntR family; UTRA domain YP_005046336.1 PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase YP_005046337.1 PFAM: Aminotransferase class I and II YP_005046338.1 PFAM: Membrane dipeptidase (Peptidase family M19) YP_005046339.1 PFAM: Glycosyl hydrolase family 9; Dockerin type I repeat YP_005046340.1 PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc YP_005046341.1 PFAM: Uncharacterised protein family UPF0102; TIGRFAM: TIGR00252 family protein YP_005046342.1 PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: flhB C-terminus-related protein YP_005046343.1 PFAM: Flagellar hook-length control protein FliK; manually curated YP_005046344.1 PFAM: Dockerin type I repeat; Glycosyl hydrolases family 16 YP_005046345.1 PFAM: Bacterial regulatory proteins, lacI family; family YP_005046346.1 PFAM: Ribonuclease HII YP_005046347.1 PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YlqF YP_005046348.1 PFAM: Peptidase S26; Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type YP_005046349.1 PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type YP_005046350.1 PFAM: Integrase core domain YP_005046351.1 manually curated YP_005046352.1 PFAM: DnaJ domain; Tetratricopeptide repeat YP_005046353.1 PFAM: Hsp70 protein YP_005046354.1 PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005046357.1 PFAM: Dockerin type I repeat; Glycosyl hydrolase family 26 YP_005046358.1 PFAM: RDD family YP_005046359.1 PFAM: PPIC-type PPIASE domain YP_005046360.1 PFAM: pfkB family carbohydrate kinase YP_005046361.1 PFAM: PilZ domain YP_005046362.1 PFAM: Chorismate synthase; TIGRFAM: chorismate synthase; manually curated YP_005046363.1 PFAM: Shikimate kinase YP_005046364.1 PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain YP_005046365.1 PFAM: Aminopeptidase I zinc metalloprotease (M18) YP_005046366.1 PFAM: Domain of unknown function (DUF3369); HD domain; Response regulator receiver domain; TIGRFAM: uncharacterized domain HDIG YP_005046367.1 PFAM: PHP domain; TIGRFAM: histidinol phosphate phosphatase HisJ family YP_005046368.1 PFAM: S4 domain; tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase YP_005046369.1 PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_005046370.1 PFAM: NifU-like N terminal domain; TIGRFAM: FeS cluster assembly scaffold IscU; FeS cluster assembly scaffold protein NifU, Clostridium type YP_005046371.1 PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS YP_005046372.1 PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein YP_005046373.1 PFAM: Uncharacterised protein family (UPF0180) YP_005046375.1 PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain YP_005046376.1 PFAM: Nucleoside diphosphate kinase YP_005046377.1 PFAM: S-adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme, Bacillus form YP_005046378.1 PFAM: S1 RNA binding domain; LytB protein; TIGRFAM: ribosomal protein S1; (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) YP_005046379.1 PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_005046380.1 PFAM: Cytidylate kinase; Shikimate kinase; TIGRFAM: cytidylate kinase YP_005046381.1 PFAM: Chorismate mutase type I; TIGRFAM: monofunctional chorismate mutase, gram positive type, clade 1 YP_005046382.1 PFAM: HutP YP_005046384.1 PFAM: HI0933-like protein; TIGRFAM: flavoprotein, HI0933 family YP_005046385.1 PFAM: Phosphoglycerate mutase family; TIGRFAM: alpha-ribazole phosphatase YP_005046386.1 PFAM: SIS domain; Helix-turn-helix domain, rpiR family YP_005046388.1 PFAM: 4'-phosphopantetheinyl transferase superfamily YP_005046389.1 PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain YP_005046390.1 PFAM: AMP-binding enzyme YP_005046391.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III YP_005046392.1 PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein YP_005046393.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III YP_005046394.1 PFAM: Dockerin type I repeat; Rare lipoprotein A (RlpA)-like double-psi beta-barrel; manually curated YP_005046395.1 PFAM: Glycosyl hydrolase family 81; Dockerin type I repeat YP_005046396.1 PFAM: Cellulose binding domain; Glycosyl hydrolase family 9; Dockerin type I repeat YP_005046397.1 PFAM: PPIC-type PPIASE domain YP_005046398.1 PFAM: Metallo-beta-lactamase superfamily YP_005046400.1 PFAM: Protein of unknown function (DUF752) YP_005046401.1 PFAM: Dockerin type I repeat; Glycosyl hydrolases family 43 YP_005046402.1 PFAM: LrgB-like family; TIGRFAM: TIGR00659 family protein YP_005046403.1 PFAM: LrgA family YP_005046404.1 PFAM: PPIC-type PPIASE domain; manually curated YP_005046405.1 manually curated YP_005046408.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005046409.1 PFAM: alpha/beta hydrolase fold YP_005046411.1 PFAM: ABC transporter YP_005046414.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005046416.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; NADH:flavin oxidoreductase / NADH oxidase family YP_005046417.1 PFAM: OPT oligopeptide transporter protein; TIGRFAM: putative oligopeptide transporter, OPT family YP_005046418.1 PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: aminoacyl-histidine dipeptidase YP_005046419.1 PFAM: Trypsin YP_005046420.1 PFAM: Protein of unknown function (DUF554) YP_005046421.1 PFAM: Beta-eliminating lyase YP_005046422.1 PFAM: Dockerin type I repeat; GDSL-like Lipase/Acylhydrolase YP_005046424.1 PFAM: Penicillinase repressor YP_005046425.1 PFAM: BlaR1 peptidase M56; manually curated YP_005046427.1 PFAM: Bacterial extracellular solute-binding protein YP_005046428.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005046429.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005046430.1 PFAM: ABC transporter; TOBE domain; TIGRFAM: spermidine/putrescine ABC transporter ATP-binding subunit YP_005046431.1 PFAM: Cupin domain; Helix-turn-helix YP_005046432.1 PFAM: DNA polymerase III polC-type N-terminus; Bacterial DNA polymerase III alpha subunit; PHP domain; Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family; DNA polymerase III, alpha chain, Gram-positive type YP_005046434.1 PFAM: Phage integrase family YP_005046435.1 TIGRFAM: DNA binding domain, excisionase family YP_005046436.1 PFAM: DNA methylase YP_005046437.1 PFAM: Helix-turn-helix YP_005046438.1 PFAM: Type III restriction enzyme, res subunit YP_005046439.1 PFAM: DNA methylase YP_005046441.1 PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain YP_005046443.1 PFAM: Resolvase, N terminal domain YP_005046447.1 PFAM: Copper amine oxidase N-terminal domain YP_005046448.1 PFAM: Integrase core domain YP_005046449.1 PFAM: Transposase YP_005046452.1 PFAM: subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit YP_005046453.1 PFAM: Oxaloacetate decarboxylase, gamma chain YP_005046454.1 PFAM: Exonuclease; manually curated YP_005046455.1 PFAM: Radical SAM superfamily; TIGRFAM: pyruvate formate-lyase 1-activating enzyme YP_005046456.1 PFAM: Glycine radical; Pyruvate formate lyase; TIGRFAM: formate acetyltransferase 1 YP_005046460.1 manually curated YP_005046461.1 PFAM: Protein of unknown function (DUF342); manually curated YP_005046462.1 PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family YP_005046464.1 PFAM: CheD YP_005046465.1 PFAM: CheC-like family YP_005046466.1 PFAM: CheW-like domain YP_005046467.1 PFAM: CheW-like domain; P2 response regulator binding domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain YP_005046468.1 PFAM: CheB methylesterase; Response regulator receiver domain YP_005046469.1 PFAM: PilZ domain YP_005046470.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_005046471.1 PFAM: SRP54-type protein, GTPase domain; TIGRFAM: flagellar biosynthetic protein FlhF YP_005046472.1 PFAM: FHIPEP family; TIGRFAM: flagellar biosynthesis protein FlhA YP_005046473.1 PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: type III secretion protein, YscU/HrpY family; flagellar biosynthetic protein FlhB YP_005046474.1 PFAM: Bacterial export proteins, family 1; TIGRFAM: flagellar biosynthetic protein FliR YP_005046475.1 PFAM: Bacterial export proteins, family 3; TIGRFAM: flagellar biosynthetic protein FliQ YP_005046476.1 PFAM: FliP family; TIGRFAM: type III secretion apparatus protein, YscR/HrcR family; flagellar biosynthetic protein FliP YP_005046477.1 PFAM: Flagellar biosynthesis protein, FliO; TIGRFAM: flagellar biosynthetic protein FliO YP_005046478.1 PFAM: Response regulator receiver domain YP_005046479.1 PFAM: Surface presentation of antigens (SPOA); CheC-like family; TIGRFAM: flagellar motor switch protein FliN; manually curated YP_005046480.1 PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; manually curated YP_005046481.1 PFAM: Flagellar basal body-associated protein FliL YP_005046482.1 PFAM: Flagellar protein (FlbD) YP_005046483.1 PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); Flagellar basal body protein FlaE; TIGRFAM: fagellar hook-basal body proteins YP_005046484.1 PFAM: Protein of unknown function (DUF3766); TIGRFAM: flagellar operon protein YP_005046485.1 PFAM: Flagellar hook capping protein YP_005046486.1 PFAM: Flagellar hook-length control protein FliK YP_005046487.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005046488.1 manually curated YP_005046489.1 PFAM: Flagellar FliJ protein; TIGRFAM: flagellar export protein FliJ YP_005046490.1 PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family; type III secretion apparatus H+-transporting two-sector ATPase; flagellar protein export ATPase FliI YP_005046491.1 PFAM: Flagellar assembly protein FliH YP_005046492.1 PFAM: FliG C-terminal domain; TIGRFAM: flagellar motor switch protein FliG YP_005046493.1 PFAM: Secretory protein of YscJ/FliF family; Flagellar M-ring protein C-terminal; TIGRFAM: flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) YP_005046494.1 PFAM: Flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE YP_005046495.1 PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); TIGRFAM: flagellar basal-body rod protein FlgC YP_005046496.1 TIGRFAM: flagellar basal-body rod protein FlgB YP_005046497.1 PFAM: Glucose inhibited division protein A; TIGRFAM: tRNA:m(5)U-54 methyltransferase YP_005046498.1 PFAM: Toprim domain; Topoisomerase DNA binding C4 zinc finger; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial YP_005046499.1 PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA; manually curated YP_005046500.1 PFAM: Magnesium chelatase, subunit ChlI; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: Mg chelatase-related protein YP_005046501.1 PFAM: Glycosyl hydrolase family 9; Dockerin type I repeat YP_005046502.1 PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric YP_005046504.1 PFAM: Cohesin domain; Copper amine oxidase N-terminal domain YP_005046505.1 PFAM: Thioesterase domain YP_005046506.1 PFAM: Sulfatase YP_005046507.1 PFAM: Cellulase (glycosyl hydrolase family 5); Dockerin type I repeat YP_005046510.1 PFAM: TrkA-C domain; Sodium/hydrogen exchanger family YP_005046513.1 PFAM: Phosphoglycerate mutase family; TIGRFAM: phosphoglycerate mutase, BPG-dependent, family 1 YP_005046516.1 PFAM: Domain of unknown function (DUF1877) YP_005046521.1 PFAM: Radical SAM superfamily; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein YP_005046522.1 PFAM: ATP cone domain; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase YP_005046527.1 PFAM: Pterin binding enzyme; B12 binding domain; Homocysteine S-methyltransferase; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; methylmalonyl-CoA mutase C-terminal domain YP_005046528.1 PFAM: Vitamin B12 dependent methionine synthase, activation domain YP_005046530.1 PFAM: Coat F domain YP_005046532.1 PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: sporulation protein, yteA family YP_005046533.1 PFAM: Phosphorylase superfamily; TIGRFAM: 5'-deoxy-5'-methylthioadenosine phosphorylase YP_005046534.1 PFAM: Initiation factor 2 subunit family; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; S-methyl-5-thioribose-1-phosphate isomerase YP_005046535.1 PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase YP_005046536.1 PFAM: DivIVA protein; TIGRFAM: DivIVA domain YP_005046537.1 PFAM: S4 domain YP_005046538.1 PFAM: YGGT family YP_005046539.1 PFAM: Protein of unknown function (DUF552); manually curated YP_005046540.1 PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family YP_005046541.1 TIGRFAM: putative membrane fusion protein YP_005046542.1 PFAM: Aluminium resistance protein YP_005046543.1 PFAM: Alpha amylase, N-terminal ig-like domain; Alpha amylase, catalytic domain YP_005046544.1 PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family YP_005046545.1 PFAM: MerR family regulatory protein YP_005046547.1 PFAM: Penicillinase repressor YP_005046548.1 PFAM: Response regulator receiver domain YP_005046549.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box YP_005046550.1 PFAM: CheB methylesterase; Response regulator receiver domain YP_005046551.1 PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain YP_005046552.1 PFAM: CheW-like domain YP_005046553.1 PFAM: CheW-like domain; P2 response regulator binding domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain YP_005046554.1 PFAM: Response regulator receiver domain YP_005046555.1 PFAM: Sporulation initiation factor Spo0A C terminal; Response regulator receiver domain; TIGRFAM: sporulation transcription factor Spo0A YP_005046556.1 PFAM: SpoIVB peptidase S55; PDZ domain (Also known as DHR or GLGF); TIGRFAM: stage IV sporulation protein B; manually curated YP_005046557.1 PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN YP_005046558.1 PFAM: Arginine repressor, C-terminal domain; Arginine repressor, DNA binding domain; TIGRFAM: arginine repressor YP_005046559.1 PFAM: ATP-NAD kinase YP_005046561.1 PFAM: Tetratricopeptide repeat YP_005046562.1 PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain YP_005046564.1 PFAM: Copper amine oxidase N-terminal domain; D-alanyl-D-alanine carboxypeptidase; L,D-transpeptidase catalytic domain YP_005046565.1 manually curated YP_005046567.1 PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-I factor; RNA polymerase sigma factor, sigma-70 family YP_005046568.1 PFAM: Regulator of chromosome condensation (RCC1) repeat; Dockerin type I repeat YP_005046571.1 PFAM: Predicted permease YP_005046572.1 PFAM: ABC transporter YP_005046573.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005046574.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005046575.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005046576.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold YP_005046578.1 PFAM: FtsJ-like methyltransferase; S4 domain; TIGRFAM: hemolysin TlyA family protein YP_005046579.1 PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase YP_005046581.1 PFAM: Divergent PAP2 family YP_005046582.1 PFAM: Polyprenyl synthetase YP_005046583.1 PFAM: Exonuclease VII small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit YP_005046584.1 PFAM: Exonuclease VII, large subunit; OB-fold nucleic acid binding domain; TIGRFAM: exodeoxyribonuclease VII, large subunit YP_005046585.1 PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB YP_005046586.1 PFAM: Small integral membrane protein (DUF2273) YP_005046587.1 PFAM: Protein of unknown function (DUF322) YP_005046588.1 PFAM: Protein of unknown function (DUF322) YP_005046589.1 manually curated YP_005046590.1 TIGRFAM: stage III sporulation protein AG YP_005046591.1 PFAM: Stage III sporulation protein AF (Spore_III_AF); TIGRFAM: stage III sporulation protein AF; manually curated YP_005046592.1 PFAM: Stage III sporulation protein AE (spore_III_AE); TIGRFAM: stage III sporulation protein AE YP_005046593.1 PFAM: Stage III sporulation protein AC/AD protein family; TIGRFAM: stage III sporulation protein AD YP_005046594.1 PFAM: Stage III sporulation protein AC/AD protein family; TIGRFAM: stage III sporulation protein AC YP_005046595.1 PFAM: Stage III sporulation protein AB (spore_III_AB); TIGRFAM: stage III sporulation protein AB YP_005046596.1 TIGRFAM: stage III sporulation protein AA YP_005046597.1 PFAM: Permease family; TIGRFAM: uracil-xanthine permease YP_005046598.1 TIGRFAM: RNA polymerase sigma-I factor; manually curated YP_005046600.1 PFAM: HD domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005046601.1 PFAM: Dihydrodipicolinate reductase, N-terminus; TIGRFAM: diaminopimelate dehydrogenase YP_005046602.1 PFAM: Ftsk gamma domain; FtsK/SpoIIIE family YP_005046604.1 PFAM: Glycosyl hydrolase family 10; Glycosyl hydrolases family 11 YP_005046605.1 PFAM: Transposase DDE domain; Transposase domain (DUF772); manually curated YP_005046606.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005046607.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005046608.1 PFAM: Bacterial extracellular solute-binding protein YP_005046610.1 PFAM: ABC transporter; ABC transporter transmembrane region YP_005046612.1 PFAM: Coenzyme PQQ synthesis protein D (PqqD) YP_005046615.1 PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt); TIGRFAM: Listeria/Bacterioides repeat YP_005046616.1 PFAM: MatE; TIGRFAM: putative efflux protein, MATE family YP_005046617.1 PFAM: Protein of unknown function (DUF3237); Dockerin type I repeat YP_005046618.1 PFAM: GDSL-like Lipase/Acylhydrolase; Dockerin type I repeat YP_005046619.1 PFAM: Alpha-L-arabinofuranosidase B (ABFB) YP_005046620.1 PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-I factor; RNA polymerase sigma factor, sigma-70 family YP_005046621.1 PFAM: Glycerophosphoryl diester phosphodiesterase family YP_005046623.1 PFAM: Domain of unknown function (DUF1877) YP_005046624.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005046628.1 PFAM: Transglutaminase-like superfamily YP_005046629.1 PFAM: S-layer homology domain YP_005046630.1 PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family YP_005046631.1 PFAM: Family of unknown function (DUF633) YP_005046633.1 PFAM: 4Fe-4S binding domain YP_005046634.1 PFAM: Cyclic nucleotide-binding domain YP_005046635.1 PFAM: Rubrerythrin YP_005046636.1 PFAM: Sigma-70, region 4; Sigma-70 factor, region 1.1; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoD, C-terminal domain; manually curated YP_005046637.1 PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; DnaB-helicase binding domain of primase; TIGRFAM: DNA primase, catalytic core; manually curated YP_005046638.1 PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative YP_005046640.1 PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_005046642.1 PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase; manually curated YP_005046643.1 PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; cytidyltransferase-related domain YP_005046644.1 PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_005046645.1 PFAM: Protein export membrane protein; TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF YP_005046646.1 PFAM: Protein export membrane protein; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family YP_005046647.1 PFAM: HD domain YP_005046648.1 PFAM: Radical SAM superfamily; TIGRFAM: six-Cys-in-45 modification radical SAM protein; radical SAM additional 4Fe4S-binding domain YP_005046649.1 TIGRFAM: rSAM-modified six-cysteine peptide SCIFF; manually curated YP_005046650.1 PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family YP_005046651.1 PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase YP_005046652.1 PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative YP_005046653.1 PFAM: Binding-protein-dependent transport system inner membrane component; manually curated YP_005046654.1 PFAM: Binding-protein-dependent transport system inner membrane component; manually curated YP_005046655.1 PFAM: Uncharacterized small protein (DUF2292) YP_005046656.1 PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: light-independent protochlorophyllide reductase, B subunit YP_005046657.1 PFAM: Nitrogenase component 1 type Oxidoreductase YP_005046658.1 PFAM: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; TIGRFAM: nitrogenase iron protein YP_005046659.1 PFAM: NMT1/THI5 like YP_005046660.1 PFAM: NMT1/THI5 like YP_005046661.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005046662.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005046663.1 PFAM: Pyridoxamine 5'-phosphate oxidase YP_005046666.1 PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_005046667.1 PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family YP_005046669.1 PFAM: Sodium/hydrogen exchanger family YP_005046670.1 PFAM: PilZ domain YP_005046672.1 PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase; glutamyl-tRNA synthetase, archaeal and eukaryotic family YP_005046673.1 PFAM: GtrA-like protein YP_005046674.1 PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase YP_005046675.1 PFAM: short chain dehydrogenase; TIGRFAM: sepiapterin reductase YP_005046676.1 TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED YP_005046677.1 PFAM: Rieske [2Fe-2S] domain; FAD dependent oxidoreductase YP_005046678.1 PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_005046680.1 PFAM: CheC-like family YP_005046681.1 PFAM: Domain of unknown function DUF83; TIGRFAM: CRISPR-associated protein Cas4 YP_005046682.1 PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2 YP_005046683.1 PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1 YP_005046684.1 PFAM: CRISPR-associated protein (Cas_Cas02710); TIGRFAM: CRISPR-associated protein, TIGR02710 family YP_005046685.1 PFAM: CRISPR-associated protein (cas_TM1812); TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated DxTHG motif protein YP_005046686.1 PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated protein; manually curated YP_005046688.1 PFAM: RAMP superfamily YP_005046689.1 PFAM: RAMP superfamily YP_005046690.1 PFAM: RAMP superfamily YP_005046693.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated endonuclease Cas3-HD YP_005046694.1 PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, subtype I-B/HMARI; CRISPR-associated protein Cas5, N-terminal domain YP_005046695.1 PFAM: Family of unknown function (DUF694); TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI YP_005046696.1 PFAM: CRISPR-associated protein TM1802 (cas_TM1802); TIGRFAM: CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI; CRISPR-associated protein, TM1802 family; manually curated YP_005046697.1 PFAM: Protein of unknown function DUF115 YP_005046698.1 PFAM: ATP cone domain; TIGRFAM: transcriptional regulator NrdR YP_005046699.1 PFAM: PRC-barrel domain; TIGRFAM: sporulation protein, YlmC/YmxH family YP_005046700.1 PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-G factor; RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, sigma-B/F/G subfamily YP_005046701.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-E factor YP_005046702.1 PFAM: Sporulation factor SpoIIGA; TIGRFAM: sigma-E processing peptidase SpoIIGA YP_005046704.1 PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ YP_005046705.1 PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA; manually curated YP_005046706.1 PFAM: Protein of unknown function (DUF1290) YP_005046707.1 PFAM: POTRA domain, FtsQ-type YP_005046708.1 PFAM: Domain of unknown function (DUF1727); Mur ligase middle domain YP_005046709.1 PFAM: CobB/CobQ-like glutamine amidotransferase domain YP_005046710.1 PFAM: Glycosyl hydrolase family 10; Domain of unknown function (DUF1083); Carbohydrate binding domain YP_005046711.1 manually curated YP_005046713.1 PFAM: Anticodon binding domain; YbaK / prolyl-tRNA synthetases associated domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family II YP_005046714.1 PFAM: Iron-containing alcohol dehydrogenase YP_005046715.1 PFAM: SNO glutamine amidotransferase family; TIGRFAM: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 YP_005046716.1 PFAM: SOR/SNZ family; TIGRFAM: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 YP_005046717.1 PFAM: Bacterial regulatory proteins, gntR family YP_005046718.1 PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A; cysteine synthases YP_005046719.1 PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase YP_005046720.1 PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein YP_005046721.1 PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein YP_005046722.1 PFAM: Homoserine O-succinyltransferase; TIGRFAM: homoserine O-succinyltransferase YP_005046723.1 PFAM: Heavy-metal-associated domain; TIGRFAM: copper ion binding protein YP_005046724.1 PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; copper ion binding protein; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; manually curated YP_005046725.1 PFAM: Predicted membrane protein (DUF2318) YP_005046726.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005046727.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005046728.1 PFAM: Heavy-metal-associated domain; Cytochrome C biogenesis protein transmembrane region YP_005046729.1 PFAM: Recombinase; Resolvase, N terminal domain; manually curated YP_005046731.1 PFAM: ArgK protein YP_005046733.1 PFAM: NUDIX domain YP_005046734.1 PFAM: Phospholipase D Active site motif; manually curated YP_005046736.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005046737.1 PFAM: Acetyl xylan esterase (AXE1) YP_005046738.1 PFAM: impB/mucB/samB family C-terminal; IMS family HHH motif; impB/mucB/samB family YP_005046739.1 PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain YP_005046741.1 PFAM: Cellulose binding domain; Glycosyl hydrolase family 9 YP_005046743.1 PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_005046744.1 PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family YP_005046745.1 PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase YP_005046746.1 manually curated YP_005046748.1 PFAM: Tryptophan RNA-binding attenuator protein YP_005046749.1 PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc) YP_005046750.1 PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_005046751.1 PFAM: Transposase, Mutator family YP_005046752.1 PFAM: Helix-turn-helix; manually curated YP_005046753.1 PFAM: Bacterial protein of unknown function (DUF896) YP_005046754.1 PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_005046755.1 PFAM: Histidine kinase; Sensor protein DegS; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005046756.1 PFAM: Nucleoside recognition; TIGRFAM: sporulation integral membrane protein YlbJ YP_005046758.1 PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain YP_005046759.1 PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family YP_005046760.1 PFAM: Helicase conserved C-terminal domain; OB-fold nucleic acid binding domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG YP_005046761.1 PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28 YP_005046762.1 PFAM: Transglycosylase associated protein YP_005046764.1 PFAM: GGDEF domain; GAF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005046765.1 PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA YP_005046766.1 PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III YP_005046767.1 PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type YP_005046768.1 PFAM: HD domain YP_005046769.1 PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF) YP_005046770.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005046771.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005046774.1 PFAM: Amidohydrolase YP_005046775.1 PFAM: Metalloenzyme superfamily; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form; proposed homoserine kinase YP_005046776.1 PFAM: HD domain YP_005046777.1 PFAM: MerR, DNA binding; MerR family regulatory protein; TipAS antibiotic-recognition domain YP_005046778.1 PFAM: Uncharacterised ACR, COG2135 YP_005046780.1 PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family YP_005046781.1 PFAM: Copper amine oxidase N-terminal domain YP_005046782.1 PFAM: Mycoplasma protein of unknown function, DUF285; Dockerin type I repeat YP_005046784.1 PFAM: ABC transporter; manually curated YP_005046785.1 PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family YP_005046786.1 PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_005046787.1 PFAM: Dockerin type I repeat YP_005046788.1 PFAM: Recombinase; Resolvase, N terminal domain YP_005046789.1 PFAM: CAAX amino terminal protease family YP_005046790.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase YP_005046791.1 PFAM: Predicted membrane protein (DUF2085) YP_005046793.1 PFAM: Ribosomal L25p family YP_005046795.1 manually curated YP_005046796.1 PFAM: Domain of unknown function (DUF2383) YP_005046797.1 PFAM: Protein of unknown function (DUF795) YP_005046798.1 PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; TIGRFAM: conserved hypothetical protein YP_005046799.1 PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1 YP_005046800.1 PFAM: PhoH-like protein YP_005046801.1 PFAM: Cupin domain YP_005046803.1 PFAM: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; TIGRFAM: nitrogenase iron protein YP_005046804.1 PFAM: Cytochrome C biogenesis protein transmembrane region YP_005046805.1 PFAM: S-layer homology domain YP_005046806.1 PFAM: NADPH-dependent FMN reductase YP_005046807.1 PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_005046808.1 PFAM: ABC transporter YP_005046809.1 PFAM: NMT1/THI5 like YP_005046810.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005046811.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005046812.1 PFAM: Nitrogenase component 1 type Oxidoreductase YP_005046813.1 PFAM: Nitrogenase component 1 type Oxidoreductase YP_005046814.1 PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: methyltransferase, MtaA/CmuA family YP_005046815.1 PFAM: B12 binding domain; TIGRFAM: methyltransferase cognate corrinoid proteins, Methanosarcina family; methylmalonyl-CoA mutase C-terminal domain YP_005046816.1 PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A; cysteine synthases YP_005046817.1 PFAM: Nitroreductase family YP_005046818.1 PFAM: Radical SAM superfamily; Dinitrogenase iron-molybdenum cofactor; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB YP_005046820.1 PFAM: Prolyl oligopeptidase family YP_005046821.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2325) YP_005046822.1 PFAM: Transposase, Mutator family YP_005046824.1 PFAM: Transposase IS66 family YP_005046825.1 PFAM: IstB-like ATP binding protein YP_005046826.1 PFAM: Sugar-specific transcriptional regulator TrmB; Integrase core domain YP_005046827.1 PFAM: IS66 Orf2 like protein YP_005046828.1 PFAM: Transposase YP_005046831.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase; manually curated YP_005046832.1 PFAM: Transposase IS200 like YP_005046833.1 PFAM: HSP20-like domain of unknown function (DUF1813) YP_005046837.1 PFAM: Transposase IS66 family; manually curated YP_005046838.1 PFAM: IS66 Orf2 like protein YP_005046840.1 PFAM: Transposase IS66 family YP_005046841.1 PFAM: IS66 Orf2 like protein YP_005046842.1 PFAM: Transposase YP_005046847.1 PFAM: IS66 Orf2 like protein YP_005046848.1 PFAM: Transposase YP_005046850.1 PFAM: Protein of unknown function (DUF1557) YP_005046851.1 TIGRFAM: intein N-terminal splicing region; RHS repeat-associated core domain; YD repeat (two copies) YP_005046852.1 PFAM: Suppressor of fused protein (SUFU) YP_005046853.1 PFAM: Transposase DDE domain; manually curated YP_005046856.1 PFAM: Transposase IS66 family YP_005046857.1 PFAM: IS66 Orf2 like protein YP_005046858.1 PFAM: Transposase YP_005046860.1 PFAM: Protein of unknown function (DUF1557); TIGRFAM: RHS repeat-associated core domain; intein N-terminal splicing region; YD repeat (two copies) YP_005046861.1 PFAM: Bacterial Ig-like domain (group 2); RHS Repeat; Dockerin type I repeat; Bacterial SH3 domain; TIGRFAM: YD repeat (two copies) YP_005046862.1 PFAM: Transposase, Mutator family YP_005046863.1 PFAM: SMI1 / KNR4 family YP_005046864.1 PFAM: Integrase core domain YP_005046866.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005046867.1 PFAM: S-layer homology domain YP_005046869.1 PFAM: IstB-like ATP binding protein YP_005046870.1 PFAM: Integrase core domain YP_005046873.1 PFAM: Stage V sporulation protein S (SpoVS) YP_005046874.1 manually curated YP_005046875.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM protein, TIGR01212 family; TIGR01210 family protein YP_005046876.1 PFAM: Double-stranded RNA binding motif; RNase3 domain; TIGRFAM: ribonuclease III, bacterial YP_005046877.1 PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II YP_005046878.1 PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein YP_005046879.1 PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase YP_005046880.1 PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase YP_005046881.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III YP_005046882.1 PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX YP_005046883.1 PFAM: DeoR-like helix-turn-helix domain YP_005046884.1 PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_005046885.1 PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: ribosomal protein S12 methylthiotransferase RimO; radical SAM methylthiotransferase, MiaB/RimO family YP_005046887.1 PFAM: Rad50 zinc hook motif YP_005046888.1 PFAM: Calcineurin-like phosphoesterase YP_005046889.1 PFAM: Phosphoglycerate mutase family YP_005046890.1 PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein YP_005046891.1 PFAM: Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain YP_005046892.1 PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; MGS-like domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit YP_005046893.1 PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit YP_005046894.1 PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2 YP_005046895.1 PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type YP_005046896.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase YP_005046898.1 PFAM: Phosphoribosyl transferase domain YP_005046899.1 TIGRFAM: putative membrane protein, TIGR04086 family; integral membrane protein, TIGR04097 family YP_005046901.1 PFAM: Peptidase propeptide and YPEB domain YP_005046903.1 PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit YP_005046904.1 PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming YP_005046905.1 PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_005046906.1 PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain YP_005046907.1 PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase YP_005046908.1 PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase YP_005046909.1 PFAM: ACT domain YP_005046910.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; TIGRFAM: cob(I)alamin adenosyltransferase YP_005046911.1 PFAM: Sir2 family YP_005046912.1 PFAM: Protein of unknown function (DUF1696) YP_005046913.1 PFAM: ABC transporter YP_005046914.1 PFAM: Transposase, Mutator family; manually curated YP_005046915.1 PFAM: Glycosyl transferase family 2 YP_005046917.1 PFAM: von Willebrand factor type A domain; manually curated YP_005046918.1 PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_005046919.1 PFAM: Glycosyltransferase family 28 C-terminal domain; Glycosyltransferase family 28 N-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase YP_005046920.1 PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA; stage V sporulation protein E; cell division protein FtsW; manually curated YP_005046921.1 PFAM: Glycosyl transferase family 4; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase YP_005046922.1 PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YP_005046923.1 PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase YP_005046924.1 PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; PASTA domain; TIGRFAM: stage V sporulation protein D; manually curated YP_005046925.1 PFAM: Cell division protein FtsL; TIGRFAM: cell division protein FtsL YP_005046926.1 PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW YP_005046927.1 PFAM: MraZ protein; TIGRFAM: mraZ protein YP_005046928.1 PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA YP_005046930.1 PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase YP_005046931.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_005046932.1 PFAM: Peptidase M16 inactive domain YP_005046933.1 PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; manually curated YP_005046934.1 PFAM: Bacterial Ig-like domain (group 2); Glycosyl hydrolase family 10; Domain of unknown function (DUF1083) YP_005046935.1 PFAM: Bacterial regulatory proteins, lacI family; family YP_005046936.1 PFAM: Dockerin type I repeat; Carbohydrate binding module (family 6); Glycosyl hydrolases family 43 YP_005046937.1 PFAM: GDSL-like Lipase/Acylhydrolase; Dockerin type I repeat YP_005046938.1 PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase YP_005046939.1 PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain YP_005046940.1 PFAM: Dockerin type I repeat; Glycosyl hydrolase family 10; Carbohydrate binding module (family 6); Glycosyl hydrolases family 11 YP_005046941.1 PFAM: Glycosyl hydrolases family 43 YP_005046942.1 PFAM: Glycosyl hydrolases family 39 YP_005046944.1 PFAM: Alpha-L-arabinofuranosidase C-terminus YP_005046945.1 PFAM: Beta-lactamase YP_005046946.1 PFAM: Dockerin type I repeat; Carbohydrate binding module (family 6); Putative esterase YP_005046948.1 PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase YP_005046949.1 PFAM: Pseudouridine synthase II TruB, C-terminal; TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase YP_005046950.1 PFAM: DHHA1 domain; DHH family YP_005046951.1 PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A YP_005046952.1 PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2; manually curated YP_005046953.1 PFAM: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family YP_005046954.1 PFAM: Protein of unknown function (DUF448); manually curated YP_005046955.1 PFAM: NusA N-terminal domain; S1 RNA binding domain; TIGRFAM: transcription termination factor NusA YP_005046956.1 PFAM: Uncharacterised BCR, YhbC family COG0779 YP_005046957.1 PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_005046958.1 PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP YP_005046959.1 PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_005046960.1 PFAM: Cytidylyltransferase family; manually curated YP_005046961.1 PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase YP_005046963.1 PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor YP_005046964.1 PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase YP_005046965.1 PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts YP_005046966.1 PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type YP_005046967.1 PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain YP_005046968.1 PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family YP_005046969.1 PFAM: O-methyltransferase YP_005046970.1 PFAM: Peptidase family U32 YP_005046971.1 PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain YP_005046972.1 manually curated YP_005046973.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-K factor YP_005046974.1 PFAM: Domain of unknown function DUF20; TIGRFAM: sporulation integral membrane protein YtvI YP_005046975.1 PFAM: Tryptophan synthase alpha chain YP_005046976.1 PFAM: Iron-containing alcohol dehydrogenase YP_005046977.1 PFAM: BtpA family; TIGRFAM: membrane complex biogenesis protein, BtpA family YP_005046978.1 PFAM: Phosphorylase superfamily YP_005046979.1 PFAM: pfkB family carbohydrate kinase YP_005046980.1 PFAM: Isochorismatase family YP_005046981.1 PFAM: Branched-chain amino acid transport system / permease component YP_005046982.1 PFAM: Branched-chain amino acid transport system / permease component YP_005046983.1 PFAM: ABC transporter YP_005046984.1 PFAM: Basic membrane protein YP_005046985.1 PFAM: Bacterial regulatory proteins, gntR family; UTRA domain YP_005046987.1 PFAM: Dockerin type I repeat YP_005046988.1 PFAM: Dockerin type I repeat YP_005046991.1 PFAM: Transposase, Mutator family YP_005046993.1 TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies) YP_005046995.1 PFAM: Transposase domain (DUF772) YP_005046996.1 PFAM: Integrase core domain YP_005046997.1 PFAM: Transposase YP_005046999.1 PFAM: Kelch motif; RHS Repeat; TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies) YP_005047000.1 PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein; manually curated YP_005047002.1 PFAM: Copper amine oxidase N-terminal domain; N-acetylmuramoyl-L-alanine amidase YP_005047003.1 manually curated YP_005047004.1 PFAM: Bacterial extracellular solute-binding protein YP_005047007.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005047008.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005047009.1 PFAM: Bacterial extracellular solute-binding protein YP_005047010.1 PFAM: Stage IV sporulation protein A (spore_IV_A); TIGRFAM: stage IV sporulation protein A YP_005047011.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YP_005047012.1 PFAM: Domain of unknown function (DUF205); TIGRFAM: acyl-phosphate glycerol 3-phosphate acyltransferase YP_005047013.1 PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain YP_005047014.1 PFAM: Protein of unknown function (DUF512); PDZ domain (Also known as DHR or GLGF); TIGRFAM: putative FeS-containing Cyanobacterial-specific oxidoreductase; manually curated YP_005047015.1 PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32 YP_005047016.1 PFAM: Uncharacterized ACR, COG1399 YP_005047017.1 PFAM: Acetokinase family; TIGRFAM: acetate kinase YP_005047018.1 PFAM: Phosphate acetyl/butaryl transferase; TIGRFAM: phosphate acetyltransferase YP_005047019.1 PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit YP_005047020.1 PFAM: Amidase; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit YP_005047021.1 PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit YP_005047022.1 PFAM: GlcNAc-PI de-N-acetylase YP_005047023.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005047025.1 PFAM: Transposase, Mutator family YP_005047026.1 PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; BRCA1 C Terminus (BRCT) domain; NAD-dependent DNA ligase C4 zinc finger domain; TIGRFAM: DNA ligase, NAD-dependent YP_005047028.1 PFAM: N-acetylmuramoyl-L-alanine amidase YP_005047029.1 PFAM: Germination protease; TIGRFAM: GPR endopeptidase YP_005047030.1 PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20 YP_005047031.1 PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit YP_005047032.1 PFAM: Competence protein; Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2; manually curated YP_005047033.1 PFAM: NlpC/P60 family; Bacterial SH3 domain YP_005047034.1 PFAM: Acetyltransferase (GNAT) family YP_005047035.1 PFAM: Small, acid-soluble spore proteins, alpha/beta type YP_005047036.1 PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC YP_005047037.1 PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase YP_005047038.1 PFAM: ThiF family; TIGRFAM: thiamine biosynthesis protein ThiF, family 2 YP_005047039.1 PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: thiazole biosynthesis protein ThiH YP_005047040.1 PFAM: Thiazole biosynthesis protein ThiG YP_005047041.1 PFAM: ThiS family; TIGRFAM: thiamine biosynthesis protein ThiS YP_005047042.1 PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB; small GTP-binding protein domain YP_005047047.1 PFAM: S-layer homology domain YP_005047048.1 PFAM: Bacterial membrane protein YfhO; manually curated YP_005047049.1 PFAM: Glycosyl transferase family 2 YP_005047050.1 PFAM: Protein of unknown function (DUF1113) YP_005047051.1 PFAM: Bacterial regulatory proteins, tetR family YP_005047052.1 PFAM: Protein of unknown function (DUF503) YP_005047053.1 PFAM: Response regulator receiver domain; Stage II sporulation protein E (SpoIIE) YP_005047054.1 PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA) YP_005047055.1 PFAM: Aminotransferase class I and II YP_005047056.1 PFAM: Thiamin pyrophosphokinase, vitamin B1 binding domain; Thiamin pyrophosphokinase, catalytic domain; TIGRFAM: thiamine pyrophosphokinase YP_005047057.1 PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase YP_005047058.1 PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A YP_005047059.1 PFAM: Protein kinase domain; PASTA domain YP_005047060.1 PFAM: Protein phosphatase 2C YP_005047061.1 PFAM: Radical SAM superfamily; TIGRFAM: 23S rRNA m2A2503 methyltransferase YP_005047062.1 PFAM: NOL1/NOP2/sun family; NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB; NOL1/NOP2/sun family putative RNA methylase; transcription antitermination factor NusB YP_005047063.1 PFAM: Putative neutral zinc metallopeptidase YP_005047064.1 PFAM: Protein of unknown function DUF116; manually curated YP_005047065.1 PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase YP_005047066.1 PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase YP_005047067.1 PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; TIGRFAM: primosomal protein N' YP_005047068.1 PFAM: Heptaprenyl diphosphate synthase component I YP_005047069.1 PFAM: Protein of unknown function (DUF1312) YP_005047070.1 PFAM: ApbE family YP_005047071.1 PFAM: Single-strand binding protein family YP_005047072.1 PFAM: Mur ligase middle domain; manually curated YP_005047073.1 PFAM: Polysaccharide deacetylase; TIGRFAM: polysaccharide deacetylase family sporulation protein PdaB YP_005047075.1 PFAM: Domain of unknown function (DUF74) YP_005047076.1 PFAM: HhH-GPD superfamily base excision DNA repair protein YP_005047078.1 PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing) YP_005047079.1 PFAM: Integrase core domain YP_005047080.1 PFAM: Carbohydrate binding module (family 6); manually curated YP_005047081.1 PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase, clade II YP_005047082.1 PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain YP_005047083.1 PFAM: Cupin domain; Helix-turn-helix YP_005047084.1 PFAM: AMP-binding enzyme YP_005047085.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hsp90 protein YP_005047086.1 PFAM: Ferric uptake regulator family YP_005047087.1 PFAM: Type IV leader peptidase family YP_005047088.1 PFAM: FHA domain YP_005047089.1 PFAM: GGDEF domain; NB-ARC domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005047090.1 PFAM: Copper amine oxidase N-terminal domain YP_005047091.1 PFAM: Copper amine oxidase N-terminal domain YP_005047092.1 PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain YP_005047095.1 PFAM: Transposase, Mutator family YP_005047096.1 PFAM: Tetratricopeptide repeat; manually curated YP_005047097.1 PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase YP_005047098.1 PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SEC-C motif; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit YP_005047101.1 PFAM: Trp repressor protein; TIGRFAM: TrpR-related protein YerC/YecD YP_005047102.1 PFAM: HD domain; Poly A polymerase head domain YP_005047103.1 PFAM: Putative lysophospholipase YP_005047105.1 PFAM: Transposase YP_005047106.1 PFAM: Transposase DDE domain YP_005047107.1 PFAM: Domain of unknown function DUF83; TIGRFAM: CRISPR-associated protein Cas4 YP_005047108.1 PFAM: HD domain; DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated endonuclease Cas3-HD YP_005047109.1 PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, subtype I-B/TNEAP; CRISPR-associated protein Cas5, N-terminal domain YP_005047110.1 TIGRFAM: CRISPR-associated autoregulator DevR family; CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP YP_005047111.1 PFAM: CRISPR-associated protein (Cas_CXXC_CXXC); TIGRFAM: CRISPR-associated protein Cas8a1/Cst1, subtype I-B/TNEAP; manually curated YP_005047112.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005047115.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005047116.1 PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase YP_005047117.1 PFAM: Indole-3-glycerol phosphate synthase YP_005047118.1 PFAM: Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase YP_005047119.1 PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase YP_005047120.1 PFAM: Anthranilate synthase component I, N terminal region; chorismate binding enzyme; TIGRFAM: anthranilate synthase component I, non-proteobacterial lineages; anthranilate synthase component I, archaeal clade YP_005047121.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_005047122.1 PFAM: Integrase core domain YP_005047124.1 PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF YP_005047125.1 PFAM: CheW-like domain YP_005047126.1 PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase YP_005047127.1 PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005047129.1 PFAM: Family 4 glycosyl hydrolase; Family 4 glycosyl hydrolase C-terminal domain YP_005047130.1 PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005047131.1 PFAM: EamA-like transporter family YP_005047133.1 PFAM: Transglycosylase SLT domain YP_005047134.1 PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase YP_005047135.1 PFAM: 3'-5' exonuclease; 5'-3' exonuclease, C-terminal SAM fold; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase family A; TIGRFAM: DNA polymerase I YP_005047138.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005047139.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005047140.1 PFAM: DUF218 domain YP_005047141.1 PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY YP_005047142.1 PFAM: RecF/RecN/SMC N terminal domain; SMC proteins Flexible Hinge Domain; TIGRFAM: chromosome segregation protein SMC, common bacterial type; manually curated YP_005047143.1 PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase YP_005047144.1 PFAM: HlyD family secretion protein YP_005047145.1 PFAM: ABC transporter YP_005047146.1 PFAM: Predicted permease YP_005047147.1 PFAM: Major Facilitator Superfamily; manually curated YP_005047148.1 PFAM: Male sterility protein; Phosphopantetheine attachment site; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: thioester reductase domain YP_005047149.1 PFAM: Phosphopantetheine attachment site; AMP-binding enzyme; Condensation domain; TIGRFAM: amino acid adenylation domain; non-ribosomal peptide synthase domain TIGR01720; manually curated YP_005047150.1 PFAM: Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, N-terminal domain; Condensation domain; Beta-ketoacyl synthase, C-terminal domain YP_005047151.1 PFAM: Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain YP_005047152.1 PFAM: Peptidase family M28 YP_005047153.1 PFAM: Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain YP_005047154.1 PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase YP_005047155.1 PFAM: Phosphopantetheine attachment site; AMP-binding enzyme YP_005047158.1 TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies) YP_005047161.1 PFAM: Mu transposase, C-terminal; Integrase core domain YP_005047164.1 PFAM: SMI1 / KNR4 family YP_005047165.1 PFAM: Transposase IS200 like YP_005047167.1 PFAM: IS66 Orf2 like protein YP_005047168.1 PFAM: Transposase YP_005047171.1 PFAM: Transposase IS66 family YP_005047172.1 PFAM: IS66 Orf2 like protein YP_005047173.1 PFAM: Transposase YP_005047174.1 manually curated YP_005047175.1 PFAM: RHS Repeat; Protein of unknown function (DUF1557); TIGRFAM: intein N-terminal splicing region; RHS repeat-associated core domain; YD repeat (two copies) YP_005047178.1 PFAM: Transposase IS66 family YP_005047179.1 PFAM: IS66 Orf2 like protein; Transposase YP_005047181.1 PFAM: RHS Repeat; Protein of unknown function (DUF1557); TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies) YP_005047182.1 PFAM: Transposase, Mutator family YP_005047183.1 PFAM: RHS Repeat; Dockerin type I repeat; Putative Ig domain; TIGRFAM: YD repeat (two copies) YP_005047184.1 PFAM: Protein of unknown function (DUF2947) YP_005047187.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005047188.1 PFAM: ABC transporter; TIGRFAM: nitrate transport ATP-binding subunits C and D YP_005047189.1 PFAM: NMT1/THI5 like YP_005047190.1 PFAM: Protein of unknown function (DUF1847) YP_005047191.1 PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: methyltransferase, MtaA/CmuA family YP_005047192.1 PFAM: B12 binding domain; TIGRFAM: methyltransferase cognate corrinoid proteins, Methanosarcina family YP_005047193.1 PFAM: Dockerin type I repeat YP_005047196.1 manually curated YP_005047197.1 PFAM: NUDIX domain YP_005047198.1 PFAM: Uncharacterized small protein (DUF2292) YP_005047199.1 PFAM: Uncharacterized small protein (DUF2292) YP_005047200.1 PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_005047201.1 PFAM: domain; Transketolase, C-terminal domain YP_005047202.1 PFAM: 4Fe-4S binding domain; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family YP_005047203.1 PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family YP_005047204.1 PFAM: Aminotransferase class I and II YP_005047205.1 PFAM: AMP-binding enzyme YP_005047206.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005047207.1 PFAM: ABC transporter; NIL domain YP_005047208.1 PFAM: NLPA lipoprotein; TIGRFAM: lipoprotein, YaeC family YP_005047209.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain YP_005047210.1 PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: methyltransferase, MtaA/CmuA family YP_005047211.1 PFAM: Aminotransferase class I and II YP_005047212.1 PFAM: Asparagine synthase; TIGRFAM: TIGR00268 family protein YP_005047213.1 PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein YP_005047214.1 PFAM: tRNAHis guanylyltransferase YP_005047217.1 PFAM: MerR, DNA binding; MerR family regulatory protein; TipAS antibiotic-recognition domain YP_005047219.1 PFAM: AIG2-like family YP_005047220.1 PFAM: Integrase core domain YP_005047221.1 PFAM: Transposase, Mutator family YP_005047222.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005047223.1 PFAM: Cohesin domain; S-layer homology domain; manually curated YP_005047224.1 PFAM: Dockerin type I repeat; Carbohydrate binding module (family 6); O-Glycosyl hydrolase family 30 YP_005047225.1 PFAM: PA14 domain YP_005047226.1 TIGRFAM: RNA polymerase sigma-I factor YP_005047227.1 PFAM: Copper amine oxidase N-terminal domain YP_005047228.1 PFAM: D-ala D-ala ligase C-terminus YP_005047231.1 PFAM: Protein of unknown function (DUF421) YP_005047232.1 PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyruvate, phosphate dikinase YP_005047233.1 PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: glycyl-tRNA synthetase, dimeric type YP_005047234.1 PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic YP_005047235.1 PFAM: RNA polymerase Rpb6; TIGRFAM: DNA-directed RNA polymerase, omega subunit YP_005047236.1 PFAM: Guanylate kinase; TIGRFAM: guanylate kinase YP_005047237.1 PFAM: Domain of unknown function (DUF370) YP_005047238.1 PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: TIGR00255 family protein YP_005047240.1 PFAM: Ricin-type beta-trefoil lectin domain; Dockerin type I repeat; Glycosyl hydrolases family 43 YP_005047241.1 PFAM: Response regulator receiver domain YP_005047242.1 PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family YP_005047243.1 PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase YP_005047244.1 PFAM: DnaJ central domain (4 repeats); DnaJ C terminal region; DnaJ domain; TIGRFAM: chaperone protein DnaJ; manually curated YP_005047245.1 PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK YP_005047246.1 PFAM: GrpE YP_005047247.1 PFAM: HrcA protein C terminal domain; TIGRFAM: heat shock gene repressor HrcA YP_005047248.1 PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase YP_005047249.1 PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; GTP-binding protein LepA C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain YP_005047250.1 PFAM: Glycerophosphoryl diester phosphodiesterase family YP_005047252.1 PFAM: Stage II sporulation protein P (SpoIIP); TIGRFAM: stage II sporulation protein P YP_005047254.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; BadF/BadG/BcrA/BcrD ATPase family; CoA enzyme activase uncharacterised domain (DUF2229); TIGRFAM: CoA-substrate-specific enzyme activase, putative YP_005047255.1 PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; manually curated; non-canonical start codon YP_005047256.1 PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type YP_005047257.1 PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase YP_005047258.1 PFAM: Radical SAM superfamily; TIGRFAM: coproporphyrinogen dehydrogenase HemZ YP_005047259.1 PFAM: Metallo-beta-lactamase superfamily YP_005047260.1 PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_005047261.1 PFAM: HD domain; ACT domain; Region found in RelA / SpoT proteins; TGS domain; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family YP_005047262.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: adenine phosphoribosyltransferase YP_005047263.1 PFAM: DHHA1 domain; DHH family; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ YP_005047264.1 PFAM: D-ala-D-ala dipeptidase YP_005047265.1 PFAM: Transposase IS200 like YP_005047266.1 PFAM: Yqey-like protein YP_005047267.1 PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21 YP_005047268.1 PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; Bacterial SNF2 helicase associated; SWIM zinc finger YP_005047269.1 PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; manually curated YP_005047270.1 PFAM: VanZ like family YP_005047271.1 PFAM: Copper amine oxidase N-terminal domain YP_005047272.1 PFAM: Copper amine oxidase N-terminal domain YP_005047273.1 manually curated YP_005047274.1 manually curated YP_005047275.1 PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-I factor; RNA polymerase sigma factor, sigma-70 family YP_005047276.1 manually curated YP_005047282.1 manually curated YP_005047284.1 PFAM: Polysaccharide biosynthesis protein YP_005047285.1 PFAM: O-Antigen ligase YP_005047286.1 PFAM: Glycosyl transferases group 1 YP_005047287.1 PFAM: Glycosyl transferases group 1 YP_005047288.1 PFAM: Glycosyl transferase family 2 YP_005047289.1 PFAM: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus YP_005047290.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_005047292.1 PFAM: CotH protein YP_005047293.1 PFAM: Transposase DDE domain YP_005047294.1 PFAM: CotH protein YP_005047295.1 PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_005047296.1 PFAM: Transposase, Mutator family YP_005047297.1 PFAM: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus YP_005047298.1 PFAM: Polysaccharide pyruvyl transferase; manually curated YP_005047299.1 PFAM: Glycosyl transferase family 2 YP_005047300.1 PFAM: Polysaccharide pyruvyl transferase YP_005047301.1 PFAM: Glycosyl transferases group 1 YP_005047302.1 PFAM: Transcription termination factor nusG YP_005047303.1 PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form YP_005047304.1 PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase YP_005047305.1 PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase YP_005047306.1 PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family YP_005047308.1 PFAM: PHP domain; manually curated YP_005047309.1 PFAM: S-layer homology domain YP_005047310.1 PFAM: HIT domain YP_005047311.1 PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase YP_005047312.1 PFAM: Domain of unknown function DUF20 YP_005047314.1 PFAM: PRC-barrel domain YP_005047315.1 PFAM: Protein of unknown function (DUF1015) YP_005047316.1 PFAM: Cellulose binding domain YP_005047317.1 TIGRFAM: RNA polymerase sigma-I factor YP_005047318.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; manually curated YP_005047320.1 PFAM: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) YP_005047321.1 PFAM: Zinc dependent phospholipase C YP_005047323.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005047324.1 PFAM: Bacterial type II secretion system protein F domain YP_005047325.1 PFAM: Bacterial type II secretion system protein F domain YP_005047326.1 PFAM: Type II/IV secretion system protein YP_005047327.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_005047329.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005047330.1 PFAM: Radical SAM superfamily; B12 binding domain YP_005047331.1 PFAM: D-alanyl-D-alanine carboxypeptidase; Penicillin-binding protein 5, C-terminal domain YP_005047332.1 PFAM: Protein of unknown function (DUF342) YP_005047333.1 PFAM: Glycosyltransferase family 28 C-terminal domain; Monogalactosyldiacylglycerol (MGDG) synthase; manually curated YP_005047334.1 PFAM: Small, acid-soluble spore proteins, alpha/beta type YP_005047335.1 PFAM: TrkA-N domain; TrkA-C domain YP_005047336.1 PFAM: TrkA-N domain YP_005047337.1 PFAM: Protein of unknown function (DUF421) YP_005047339.1 PFAM: Sodium/calcium exchanger protein YP_005047340.1 PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family YP_005047341.1 PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit YP_005047342.1 PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate adenylyltransferase YP_005047343.1 PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family YP_005047344.1 PFAM: Glutaredoxin; TIGRFAM: Glutaredoxin-like protein, YruB-family YP_005047346.1 PFAM: Carbohydrate binding domain (family 25) YP_005047347.1 PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) YP_005047348.1 PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase YP_005047349.1 PFAM: NOL1/NOP2/sun family; TIGRFAM: NOL1/NOP2/sun family putative RNA methylase YP_005047350.1 PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005047351.1 PFAM: Metallo-beta-lactamase superfamily YP_005047352.1 PFAM: Protein of unknown function (DUF1393) YP_005047353.1 PFAM: Phosphoglycerate mutase family; TIGRFAM: alpha-ribazole phosphatase YP_005047354.1 PFAM: Cobalamin-5-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase/cobalamin synthase YP_005047355.1 PFAM: Cobinamide kinase / cobinamide phosphate guanyltransferase YP_005047356.1 PFAM: CobD/Cbib protein; TIGRFAM: cobalamin biosynthesis protein CobD YP_005047357.1 PFAM: ACT domain; Amino acid kinase family; TIGRFAM: aspartate kinase YP_005047358.1 PFAM: Homoserine dehydrogenase, NAD binding domain; Homoserine dehydrogenase YP_005047360.1 PFAM: Domain of unknown function (DUF3369); HD domain; Response regulator receiver domain; TIGRFAM: uncharacterized domain HDIG YP_005047361.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold YP_005047362.1 PFAM: Response regulator receiver domain YP_005047363.1 PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase YP_005047364.1 PFAM: Patatin-like phospholipase YP_005047366.1 PFAM: Type IV leader peptidase family YP_005047368.1 PFAM: Domain of unknown function (DUF477) YP_005047370.1 PFAM: Acyltransferase family; manually curated YP_005047371.1 PFAM: YhhN-like protein YP_005047372.1 PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit YP_005047373.1 PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit; homoaconitate hydratase family protein YP_005047374.1 PFAM: Protein of unknown function (DUF1266) YP_005047375.1 PFAM: DnaJ domain; Tetratricopeptide repeat; manually curated YP_005047376.1 PFAM: Hsp70 protein YP_005047377.1 PFAM: Sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein YP_005047379.1 PFAM: Nitroreductase family YP_005047380.1 PFAM: Nitroreductase family YP_005047381.1 PFAM: VanZ like family YP_005047382.1 PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain YP_005047390.1 PFAM: Rubrerythrin YP_005047391.1 PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: glucosamine-6-phosphate isomerase YP_005047396.1 PFAM: Eco57I restriction endonuclease; manually curated YP_005047398.1 PFAM: Domain of unknown function (DUF1848) YP_005047400.1 PFAM: Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: TIGR02688 family protein; conserved hypothetical protein YP_005047401.1 PFAM: PglZ domain; TIGRFAM: TIGR02687 family protein YP_005047402.1 PFAM: Divergent AAA domain YP_005047403.1 PFAM: Eco57I restriction endonuclease YP_005047405.1 PFAM: Domain of unknown function (DUF1788) YP_005047406.1 PFAM: Putative inner membrane protein (DUF1819) YP_005047407.1 PFAM: HNH endonuclease YP_005047408.1 PFAM: LysE type translocator YP_005047409.1 PFAM: Serine hydroxymethyltransferase YP_005047412.1 PFAM: Sodium/hydrogen exchanger family YP_005047414.1 PFAM: von Willebrand factor type A domain; S-layer homology domain YP_005047416.1 PFAM: Mu transposase, C-terminal; manually curated YP_005047417.1 PFAM: Integrase core domain YP_005047418.1 PFAM: TnsA endonuclease N terminal; TnsA endonuclease C terminal YP_005047423.1 PFAM: IstB-like ATP binding protein YP_005047424.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005047425.1 PFAM: Transposase DDE domain YP_005047426.1 PFAM: Transposase, Mutator family YP_005047427.1 PFAM: Transposase, Mutator family YP_005047429.1 PFAM: StbA protein YP_005047430.1 PFAM: Transposase DDE domain; Transposase domain (DUF772); manually curated YP_005047431.1 PFAM: S23 ribosomal protein YP_005047432.1 PFAM: Protein of unknown function (DUF2703) YP_005047433.1 TIGRFAM: small redox-active disulfide protein 2 YP_005047434.1 PFAM: Predicted permease; manually curated YP_005047435.1 PFAM: Low molecular weight phosphotyrosine protein phosphatase YP_005047436.1 PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein YP_005047437.1 PFAM: Bacterial regulatory protein, arsR family; manually curated YP_005047440.1 PFAM: Protein of unknown function (DUF1232) YP_005047441.1 PFAM: BFD-like [2Fe-2S] binding domain YP_005047442.1 PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing) YP_005047443.1 PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucosamine mutase YP_005047444.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_005047445.1 PFAM: YbbR-like protein YP_005047446.1 PFAM: DisA bacterial checkpoint controller nucleotide-binding; TIGRFAM: TIGR00159 family protein YP_005047447.1 PFAM: Radical SAM superfamily YP_005047448.1 PFAM: AMMECR1; Catalytic LigB subunit of aromatic ring-opening dioxygenase; TIGRFAM: uncharacterized protein, PH0010 family; manually curated YP_005047450.1 PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain YP_005047451.1 PFAM: FeoA domain YP_005047452.1 PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain YP_005047454.1 PFAM: Protein of unknown function (DUF970) YP_005047455.1 PFAM: D-alanyl-D-alanine carboxypeptidase; Penicillin-binding protein 5, C-terminal domain YP_005047457.1 PFAM: PilZ domain YP_005047458.1 PFAM: Uncharacterised ACR, YagE family COG1723 YP_005047459.1 PFAM: Uncharacterised ACR, YagE family COG1723 YP_005047460.1 PFAM: Small acid-soluble spore protein H family; TIGRFAM: small acid-soluble spore protein, H-type YP_005047463.1 PFAM: Cellulose binding domain; Glycosyl hydrolase family 9; Dockerin type I repeat YP_005047464.1 PFAM: Methylenetetrahydrofolate reductase YP_005047465.1 PFAM: Glucuronate isomerase YP_005047467.1 PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt); S-layer homology domain; TIGRFAM: Listeria/Bacterioides repeat YP_005047469.1 PFAM: Amidohydrolase family YP_005047470.1 PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase YP_005047471.1 PFAM: Phosphorylase superfamily; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family YP_005047472.1 PFAM: Transposase DDE domain; Transposase domain (DUF772); manually curated YP_005047473.1 PFAM: SpoVR like protein YP_005047474.1 PFAM: Protein of unknown function (DUF444); TIGRFAM: sporulation protein YhbH YP_005047475.1 PFAM: PrkA AAA domain; PrkA serine protein kinase C-terminal domain YP_005047478.1 manually curated YP_005047479.1 PFAM: Sulfite exporter TauE/SafE YP_005047480.1 PFAM: Sulfite exporter TauE/SafE YP_005047481.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS YP_005047482.1 PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA YP_005047483.1 PFAM: Leucyl/phenylalanyl-tRNA protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA--protein transferase YP_005047485.1 manually curated YP_005047487.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2329); Glycosyltransferase family 36; Putative carbohydrate binding domain; Glycosyltransferase 36 associated family YP_005047488.1 PFAM: Glycosyl hydrolase family 9; Dockerin type I repeat; N-terminal ig-like domain of cellulase YP_005047489.1 PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3; manually curated YP_005047490.1 PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20 YP_005047491.1 PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35 YP_005047492.1 PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3 YP_005047493.1 PFAM: Integrase core domain YP_005047494.1 PFAM: Thymidylate synthase complementing protein; TIGRFAM: thymidylate synthase, flavin-dependent YP_005047495.1 PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase YP_005047496.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005047497.1 PFAM: Cellulose binding domain; Glycosyl hydrolase family 9; Glycosyl hydrolase family 48 YP_005047498.1 PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase YP_005047499.1 PFAM: Helix-hairpin-helix motif; SLBB domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; comEA protein YP_005047500.1 PFAM: D-alanyl-D-alanine carboxypeptidase; Penicillin-binding protein 5, C-terminal domain; manually curated YP_005047501.1 PFAM: Transposase, Mutator family YP_005047505.1 PFAM: ABC transporter YP_005047507.1 PFAM: Transposase, Mutator family YP_005047508.1 PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein YP_005047510.1 PFAM: HD domain; TIGRFAM: putative HD superfamily hydrolase of NAD metabolism YP_005047511.1 PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain YP_005047512.1 PFAM: ROK family; TIGRFAM: ROK family protein (putative glucokinase) YP_005047513.1 PFAM: Alpha-L-arabinofuranosidase B (ABFB); Dockerin type I repeat; Glycosyl hydrolases family 43 YP_005047514.1 PFAM: GH3 auxin-responsive promoter YP_005047515.1 PFAM: NAD dependent epimerase/dehydratase family YP_005047518.1 PFAM: Acetyltransferase (GNAT) family YP_005047519.1 PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase YP_005047520.1 PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_005047521.1 PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent YP_005047522.1 PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase YP_005047523.1 PFAM: Phosphoribosyl transferase domain; Glutamine amidotransferases class-II; TIGRFAM: amidophosphoribosyltransferase YP_005047524.1 PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein YP_005047525.1 PFAM: Permease family YP_005047526.1 PFAM: Membrane transport protein YP_005047528.1 PFAM: Transposase IS200 like YP_005047530.1 PFAM: delta endotoxin, N-terminal domain YP_005047533.1 PFAM: Integrase core domain YP_005047534.1 PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; tRNA methyl transferase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit YP_005047535.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM protein, TIGR01212 family; manually curated YP_005047536.1 PFAM: Protein of unknown function DUF111; TIGRFAM: TIGR00299 family protein YP_005047537.1 PFAM: AIR carboxylase YP_005047538.1 PFAM: Domain of unknown function (DUF2520); Rossmann-like domain YP_005047539.1 PFAM: Copper amine oxidase N-terminal domain YP_005047540.1 PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2 YP_005047541.1 PFAM: Helix-turn-helix YP_005047542.1 PFAM: Spo0E like sporulation regulatory protein YP_005047543.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB YP_005047544.1 PFAM: Aminotransferase class I and II YP_005047545.1 PFAM: AsnC family YP_005047546.1 PFAM: DivIVA protein YP_005047547.1 PFAM: Thioredoxin; TIGRFAM: thioredoxin; protein disulfide-isomerase domain YP_005047548.1 PFAM: Uncharacterised BCR, COG1937 YP_005047549.1 PFAM: Protein of unknown function (DUF1113) YP_005047550.1 PFAM: Protein of unknown function (DUF3267) YP_005047551.1 PFAM: Carbohydrate phosphorylase; Protein of unknown function (DUF3417); TIGRFAM: alpha-glucan phosphorylases YP_005047552.1 TIGRFAM: TIGR00375 family protein YP_005047553.1 PFAM: HMGL-like YP_005047554.1 PFAM: Carbohydrate binding module (family 6); Glycosyl hydrolases family 11 YP_005047555.1 PFAM: BadF/BadG/BcrA/BcrD ATPase family; TIGRFAM: CoA-substrate-specific enzyme activase, putative YP_005047557.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; CoA enzyme activase uncharacterised domain (DUF2229) YP_005047558.1 PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type YP_005047559.1 PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist YP_005047560.1 PFAM: Phosphofructokinase YP_005047561.1 PFAM: Glycine radical; Pyruvate formate lyase; TIGRFAM: formate acetyltransferase 1 YP_005047562.1 PFAM: Radical SAM superfamily; TIGRFAM: pyruvate formate-lyase 1-activating enzyme; glycyl-radical enzyme activating protein family YP_005047564.1 TIGRFAM: RNA polymerase sigma-I factor YP_005047571.1 PFAM: Type II/IV secretion system protein YP_005047572.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_005047574.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_005047575.1 PFAM: PilZ domain YP_005047576.1 PFAM: PPIC-type PPIASE domain YP_005047577.1 PFAM: 37-kD nucleoid-associated bacterial protein YP_005047578.1 PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA) YP_005047579.1 PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit YP_005047580.1 PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit YP_005047582.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; NB-ARC domain YP_005047583.1 PFAM: Dockerin type I repeat; Glycosyl hydrolase family 26 YP_005047586.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005047587.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005047590.1 PFAM: Tetratricopeptide repeat YP_005047591.1 PFAM: ATPase family associated with various cellular activities (AAA); Tetratricopeptide repeat YP_005047594.1 PFAM: Pentapeptide repeats (8 copies) YP_005047596.1 PFAM: Dockerin type I repeat YP_005047599.1 PFAM: Radical SAM superfamily; B12 binding domain YP_005047600.1 PFAM: Radical SAM superfamily; B12 binding domain YP_005047601.1 PFAM: Reverse transcriptase (RNA-dependent DNA polymerase) YP_005047602.1 PFAM: Radical SAM superfamily; B12 binding domain YP_005047603.1 PFAM: Radical SAM superfamily; B12 binding domain YP_005047604.1 manually curated YP_005047607.1 PFAM: Uncharacterized protein conserved in bacteria C-term(DUF2220) YP_005047609.1 PFAM: Group II intron, maturase-specific domain; Reverse transcriptase (RNA-dependent DNA polymerase) YP_005047610.1 PFAM: IstB-like ATP binding protein YP_005047611.1 PFAM: Transposase YP_005047612.1 PFAM: IS66 Orf2 like protein YP_005047615.1 PFAM: Putative peptidoglycan binding domain; TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies) YP_005047617.1 PFAM: Transposase IS66 family; Insertion element protein YP_005047618.1 PFAM: Transposase IS66 family YP_005047619.1 PFAM: IS66 Orf2 like protein YP_005047620.1 PFAM: Transposase YP_005047621.1 PFAM: Transposase, Mutator family YP_005047623.1 PFAM: Predicted permease YP_005047624.1 PFAM: Predicted permease; manually curated YP_005047625.1 PFAM: ABC transporter YP_005047627.1 manually curated YP_005047629.1 PFAM: Copper amine oxidase N-terminal domain YP_005047630.1 PFAM: Bacterial transcription activator, effector binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family YP_005047631.1 PFAM: Putative transposase YP_005047632.1 PFAM: Transglutaminase-like superfamily YP_005047636.1 PFAM: Transposase YP_005047637.1 PFAM: Integrase core domain YP_005047643.1 PFAM: IS66 Orf2 like protein YP_005047644.1 PFAM: Transposase YP_005047648.1 PFAM: Dockerin type I repeat YP_005047649.1 manually curated YP_005047650.1 PFAM: Copper/zinc superoxide dismutase (SODC) YP_005047651.1 PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller YP_005047652.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus YP_005047655.1 PFAM: Protein of unknown function (DUF1212) YP_005047656.1 PFAM: Cysteine-rich secretory protein family; LysM domain; TIGRFAM: spore coat assembly protein SafA; uncharacterized protein, YkwD family YP_005047657.1 PFAM: Bacterial SH3 domain; L,D-transpeptidase catalytic domain; manually curated YP_005047660.1 PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease) YP_005047662.1 PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family YP_005047663.1 PFAM: Bacillus/Clostridium GerA spore germination protein YP_005047664.1 PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase, Methanosarcina type YP_005047665.1 PFAM: BioY family YP_005047666.1 PFAM: Nitroreductase family YP_005047667.1 PFAM: short chain dehydrogenase YP_005047669.1 PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family YP_005047673.1 PFAM: ubiE/COQ5 methyltransferase family YP_005047674.1 PFAM: Endoribonuclease L-PSP YP_005047676.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005047677.1 PFAM: Protein of unknown function, DUF255 YP_005047678.1 PFAM: Glycosyl hydrolases family 18; Dockerin type I repeat YP_005047679.1 PFAM: DEAD_2 YP_005047680.1 PFAM: Domain of Unknown Function (DUF1540) YP_005047681.1 PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase YP_005047682.1 PFAM: Bacterial regulatory protein, arsR family YP_005047683.1 PFAM: Glycosyl hydrolase family 1 YP_005047684.1 PFAM: HD domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; manually curated YP_005047685.1 PFAM: L-fucose isomerase, C-terminal domain YP_005047686.1 PFAM: S-layer homology domain; Uncharacterised BCR, COG1649 YP_005047687.1 PFAM: Copper amine oxidase N-terminal domain; Regulator of chromosome condensation (RCC1) repeat YP_005047690.1 PFAM: Domain of unknown function (DUF307) YP_005047691.1 PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme YP_005047692.1 PFAM: Cellulose binding domain; Glycosyl hydrolase family 9; Dockerin type I repeat YP_005047693.1 PFAM: Late competence development protein ComFB YP_005047694.1 PFAM: Glycosyl hydrolase family 9; Dockerin type I repeat YP_005047695.1 manually curated YP_005047696.1 PFAM: Domain of unknown function (DUF1835); Protein of unknown function YP_005047697.1 PFAM: YibE/F-like protein YP_005047698.1 PFAM: Major Facilitator Superfamily; manually curated YP_005047699.1 PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: TIGR02453 family protein YP_005047700.1 manually curated YP_005047701.1 PFAM: Ribonucleotide reductase, all-alpha domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent YP_005047702.1 PFAM: Uncharacterised BCR, COG1649 YP_005047703.1 PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4 YP_005047704.1 PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4 YP_005047705.1 PFAM: Radical SAM superfamily; TIGRFAM: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE, clostridial YP_005047706.1 PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; 6-pyruvoyl tetrahydropterin synthase/QueD family protein YP_005047707.1 PFAM: ExsB; TIGRFAM: queuosine biosynthesis protein QueC YP_005047708.1 PFAM: BadF/BadG/BcrA/BcrD ATPase family; TIGRFAM: CoA-substrate-specific enzyme activase, putative YP_005047709.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component YP_005047710.1 PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457) YP_005047711.1 PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain YP_005047712.1 PFAM: Aminotransferase class I and II; TIGRFAM: LL-diaminopimelate aminotransferase YP_005047713.1 PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase YP_005047715.1 PFAM: Protein of unknown function (DUF2029) YP_005047716.1 PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase YP_005047717.1 PFAM: Glycosyl transferase family 2 YP_005047718.1 PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase YP_005047719.1 PFAM: Domain of unknown function (DUF1858); TIGRFAM: hydrid cluster protein-associated redox disulfide domain YP_005047720.1 PFAM: Fumarase C-terminus; TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region YP_005047721.1 PFAM: Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region YP_005047722.1 PFAM: Universal stress protein family YP_005047723.1 PFAM: Bacterial DNA-binding protein YP_005047724.1 PFAM: Sporulation initiation factor Spo0A C terminal; Response regulator receiver domain; TIGRFAM: sporulation transcription factor Spo0A YP_005047725.1 PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase YP_005047726.1 PFAM: Response regulator receiver domain YP_005047727.1 PFAM: Putative RNA methylase family UPF0020; THUMP domain YP_005047729.1 PFAM: Transglutaminase-like superfamily YP_005047730.1 PFAM: Cohesin domain; S-layer homology domain; manually curated YP_005047731.1 PFAM: Cohesin domain; S-layer homology domain; manually curated YP_005047732.1 PFAM: Cohesin domain; manually curated YP_005047733.1 PFAM: Cellulose binding domain; Cohesin domain YP_005047734.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_005047735.1 PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain YP_005047736.1 PFAM: Cell cycle protein YP_005047737.1 PFAM: Transposase DDE domain YP_005047738.1 PFAM: FHA domain YP_005047739.1 PFAM: HD domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005047740.1 PFAM: Rhomboid family YP_005047742.1 PFAM: ABC transporter YP_005047744.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005047745.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005047746.1 PFAM: ABC transporter; ABC transporter transmembrane region YP_005047747.1 PFAM: Uncharacterized BCR, YaiI/YqxD family COG1671 YP_005047748.1 PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT YP_005047749.1 PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: L-lactate dehydrogenase YP_005047750.1 PFAM: Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain YP_005047751.1 PFAM: GDSL-like Lipase/Acylhydrolase; Dockerin type I repeat; Carbohydrate binding module (family 6) YP_005047752.1 PFAM: CAAX amino terminal protease family YP_005047753.1 PFAM: MutS domain V YP_005047754.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_005047755.1 PFAM: Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: intein N-terminal splicing region YP_005047756.1 PFAM: alpha/beta hydrolase fold YP_005047757.1 PFAM: Cohesin domain; S-layer homology domain YP_005047761.1 PFAM: Sporulation and spore germination YP_005047762.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005047764.1 PFAM: ABC transporter; ABC transporter transmembrane region YP_005047765.1 PFAM: ABC transporter; ABC transporter transmembrane region YP_005047766.1 PFAM: MarR family YP_005047767.1 PFAM: Citrate synthase YP_005047768.1 PFAM: Uncharacterised protein family (UPF0153) YP_005047769.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: amidophosphoribosyltransferase YP_005047771.1 PFAM: Phosphotransferase enzyme family YP_005047772.1 PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; MGS-like domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit YP_005047773.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB YP_005047775.1 PFAM: Protein of unknown function (DUF458) YP_005047777.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005047779.1 PFAM: Dockerin type I repeat YP_005047780.1 PFAM: Iron only hydrogenase large subunit, C-terminal domain; Pyridine nucleotide-disulphide oxidoreductase; Iron hydrogenase small subunit; TIGRFAM: putative selenate reductase, YgfK subunit; hydrogenase, Fe-only YP_005047782.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005047783.1 PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter YP_005047784.1 PFAM: Dockerin type I repeat; Polysaccharide deacetylase; Carbohydrate binding module (family 6); Glycosyl hydrolases family 11 YP_005047785.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005047786.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005047787.1 PFAM: Rubrerythrin YP_005047788.1 PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP YP_005047789.1 PFAM: Protein of unknown function DUF47; TIGRFAM: TIGR00153 family protein YP_005047790.1 PFAM: Phosphate transporter family YP_005047791.1 PFAM: Predicted membrane protein (DUF2324); manually curated YP_005047797.1 PFAM: Glutathionylspermidine synthase YP_005047800.1 PFAM: DnaJ domain YP_005047802.1 PFAM: Domain of unknown function (DUF955) YP_005047804.1 PFAM: UvrD/REP helicase; TIGRFAM: helicase-exonuclease AddAB, AddA subunit, Firmicutes type YP_005047805.1 PFAM: Exodeoxyribonuclease V, gamma subunit; TIGRFAM: helicase-exonuclease AddAB, AddB subunit YP_005047806.1 manually curated YP_005047807.1 manually curated YP_005047808.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; manually curated YP_005047809.1 PFAM: Peptidase C39 family; ABC transporter; ABC transporter transmembrane region; TIGRFAM: ABC-type bacteriocin transporter; type I secretion system ABC transporter, HlyB family YP_005047810.1 PFAM: Transposase DDE domain YP_005047811.1 PFAM: Transposase IS200 like YP_005047812.1 PFAM: AMP-binding enzyme YP_005047813.1 PFAM: SelR domain; Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase; methionine-R-sulfoxide reductase YP_005047815.1 PFAM: short chain dehydrogenase YP_005047816.1 PFAM: Alpha amylase, C-terminal all-beta domain; Alpha amylase, catalytic domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YP_005047817.1 PFAM: Cohesin domain YP_005047818.1 PFAM: AMP-binding enzyme YP_005047820.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005047821.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005047822.1 PFAM: FIST C domain; FIST N domain YP_005047824.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005047825.1 PFAM: Protein of unknown function (DUF1667) YP_005047826.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_005047827.1 PFAM: BFD-like [2Fe-2S] binding domain; FAD dependent oxidoreductase YP_005047829.1 PFAM: Glycosyl transferase family 2 YP_005047830.1 PFAM: Xylose isomerase-like TIM barrel YP_005047832.1 PFAM: Glycosyl transferase family 2 YP_005047833.1 PFAM: FAD dependent oxidoreductase YP_005047834.1 PFAM: Transposase DDE domain; Transposase domain (DUF772); manually curated YP_005047836.1 PFAM: Ferritin-like domain YP_005047837.1 PFAM: Domain of unknown function (DUF227) YP_005047838.1 PFAM: Hemerythrin HHE cation binding domain YP_005047839.1 PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; Adenylylsulphate kinase; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein domain YP_005047840.1 PFAM: Phosphoadenosine phosphosulfate reductase family YP_005047841.1 PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: thioredoxin-dependent adenylylsulfate APS reductase; phosophoadenylyl-sulfate reductase (thioredoxin) YP_005047842.1 PFAM: Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain YP_005047843.1 PFAM: Cys/Met metabolism PLP-dependent enzyme YP_005047844.1 PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005047848.1 PFAM: Radical SAM superfamily YP_005047850.1 PFAM: Protein of unknown function (DUF1706) YP_005047851.1 PFAM: HTH domain YP_005047852.1 PFAM: SPFH domain / Band 7 family YP_005047853.1 PFAM: Penicillinase repressor YP_005047854.1 PFAM: BlaR1 peptidase M56 YP_005047856.1 PFAM: Copper amine oxidase N-terminal domain YP_005047857.1 PFAM: HD domain; Protein of unknown function (DUF1113) YP_005047862.1 PFAM: PilZ domain YP_005047865.1 PFAM: Stage II sporulation protein E (SpoIIE); TIGRFAM: stage II sporulation protein E YP_005047868.1 PFAM: Nucleotidyltransferase domain YP_005047870.1 PFAM: Copper amine oxidase N-terminal domain YP_005047872.1 PFAM: Copper amine oxidase N-terminal domain YP_005047876.1 PFAM: Copper amine oxidase N-terminal domain YP_005047877.1 PFAM: IstB-like ATP binding protein YP_005047878.1 PFAM: Integrase core domain YP_005047881.1 PFAM: Pentapeptide repeats (8 copies) YP_005047885.1 PFAM: Transglutaminase-like superfamily YP_005047890.1 PFAM: MgtE intracellular N domain; Divalent cation transporter; CBS domain; TIGRFAM: Mg2+ transporter (mgtE) YP_005047893.1 PFAM: Cache domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005047894.1 PFAM: alpha/beta hydrolase fold YP_005047895.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_005047896.1 PFAM: Methyltransferase domain YP_005047897.1 manually curated YP_005047898.1 PFAM: Bacterial regulatory proteins, tetR family YP_005047900.1 PFAM: MMPL family YP_005047901.1 TIGRFAM: X-X-X-Leu-X-X-Gly heptad repeats YP_005047902.1 PFAM: dUTPase; TIGRFAM: deoxycytidine triphosphate deaminase YP_005047905.1 PFAM: Pyridoxamine 5'-phosphate oxidase YP_005047906.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB YP_005047907.1 PFAM: alpha/beta hydrolase fold YP_005047908.1 PFAM: UDP-glucoronosyl and UDP-glucosyl transferase; TIGRFAM: glycosyltransferase, MGT family YP_005047910.1 PFAM: Transposase DDE domain; Transposase domain (DUF772); manually curated YP_005047911.1 PFAM: NADPH-dependent FMN reductase YP_005047912.1 PFAM: HAMP domain; Cache domain; Methyl-accepting chemotaxis protein (MCP) signaling domain YP_005047913.1 PFAM: Integrase core domain YP_005047914.1 PFAM: Transposase DDE domain; Transposase domain (DUF772); manually curated YP_005047915.1 PFAM: BlaR1 peptidase M56 YP_005047916.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005047918.1 PFAM: Acetyltransferase (GNAT) family YP_005047919.1 PFAM: Transposase DDE domain; Transposase domain (DUF772); manually curated YP_005047922.1 PFAM: EamA-like transporter family YP_005047924.1 PFAM: Glycosyl transferase family 8 YP_005047925.1 PFAM: ATP-binding region; TIGRFAM: MJ0570-related uncharacterized domain YP_005047926.1 PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase YP_005047927.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED YP_005047928.1 PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase YP_005047929.1 PFAM: Hydroxyethylthiazole kinase family; TIGRFAM: hydroxyethylthiazole kinase YP_005047930.1 manually curated YP_005047931.1 PFAM: Spermine/spermidine synthase; TIGRFAM: spermidine synthase YP_005047932.1 PFAM: 2',5' RNA ligase family; TIGRFAM: 2'-5' RNA ligase YP_005047934.1 PFAM: Penicillinase repressor YP_005047935.1 PFAM: BlaR1 peptidase M56 YP_005047936.1 PFAM: Predicted permease YP_005047937.1 PFAM: ABC transporter YP_005047938.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005047939.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005047940.1 PFAM: Acetyltransferase (GNAT) family YP_005047941.1 PFAM: Radical SAM superfamily YP_005047942.1 PFAM: Recombinase; Resolvase, N terminal domain YP_005047944.1 PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005047945.1 PFAM: Helix-turn-helix YP_005047947.1 PFAM: Accessory gene regulator B YP_005047948.1 PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase YP_005047949.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005047950.1 PFAM: Chromate transporter YP_005047951.1 PFAM: Chromate transporter YP_005047953.1 PFAM: ABC-2 type transporter YP_005047954.1 PFAM: ABC transporter; TIGRFAM: daunorubicin resistance ABC transporter ATP-binding subunit YP_005047955.1 PFAM: Putative redox-active protein (C_GCAxxG_C_C); Dinitrogenase iron-molybdenum cofactor; TIGRFAM: C_GCAxxG_C_C family probable redox protein YP_005047956.1 PFAM: ParA/MinD ATPase like YP_005047957.1 PFAM: Metallo-beta-lactamase superfamily YP_005047958.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_005047959.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_005047960.1 PFAM: Dinitrogenase iron-molybdenum cofactor YP_005047962.1 PFAM: Protein of unknown function (DUF1393); manually curated YP_005047963.1 PFAM: NifU-like N terminal domain YP_005047964.1 PFAM: Protein of unknown function DUF134 YP_005047966.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005047967.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_005047968.1 PFAM: Predicted RNA-binding protein YP_005047970.1 PFAM: Amidohydrolase YP_005047971.1 PFAM: FecCD transport family YP_005047972.1 PFAM: Periplasmic binding protein YP_005047973.1 PFAM: Precorrin-8X methylmutase YP_005047974.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; TIGRFAM: cob(I)alamin adenosyltransferase YP_005047975.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyric acid synthase CobQ YP_005047976.1 PFAM: Aminotransferase class I and II; TIGRFAM: L-threonine-O-3-phosphate decarboxylase; histidinol-phosphate aminotransferase YP_005047977.1 PFAM: CobD/Cbib protein; TIGRFAM: cobalamin biosynthesis protein CobD YP_005047978.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyrinic acid a,c-diamide synthase YP_005047979.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; Putative methyltransferase; TIGRFAM: methyltransferase, FkbM family; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit YP_005047980.1 PFAM: CbiX YP_005047981.1 PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase YP_005047982.1 PFAM: Delta-aminolevulinic acid dehydratase YP_005047983.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; Uroporphyrinogen-III synthase HemD; TIGRFAM: uroporphyrin-III C-methyltransferase YP_005047984.1 PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase YP_005047985.1 PFAM: Precorrin-6x reductase CbiJ/CobK; TIGRFAM: precorrin-6x reductase; siroheme synthase, N-terminal domain YP_005047986.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-3B C17-methyltransferase YP_005047987.1 PFAM: Shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, N-terminal domain; TIGRFAM: glutamyl-tRNA reductase YP_005047988.1 PFAM: Cobalamin synthesis G C-terminus; Cobalamin biosynthesis central region; Cobalamin synthesis G N-terminal YP_005047989.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-4 C11-methyltransferase YP_005047990.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-2 C20-methyltransferase YP_005047991.1 PFAM: CbiD; TIGRFAM: cobalamin biosynthesis protein CbiD YP_005047992.1 PFAM: ABC transporter; Cobalt ATP-binding cassette C terminal; TIGRFAM: cobalt transport protein ATP-binding subunit YP_005047993.1 PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ YP_005047994.1 PFAM: Cobalt transport protein component CbiN; TIGRFAM: cobalt transport protein YP_005047995.1 PFAM: Cobalt uptake substrate-specific transmembrane region; TIGRFAM: cobalamin biosynthesis protein CbiM YP_005047996.1 PFAM: HNH endonuclease YP_005047998.1 TIGRFAM: putative zinc finger/helix-turn-helix protein, YgiT family YP_005048001.1 PFAM: VRR-NUC domain YP_005048002.1 PFAM: Bifunctional DNA primase/polymerase, N-terminal YP_005048008.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005048009.1 PFAM: Group II intron, maturase-specific domain; Reverse transcriptase (RNA-dependent DNA polymerase) YP_005048010.1 PFAM: Plasmid pRiA4b ORF-3-like protein YP_005048012.1 PFAM: IstB-like ATP binding protein YP_005048013.1 PFAM: Integrase core domain YP_005048015.1 PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Domain of unknown function (DUF3387); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family YP_005048016.1 PFAM: Type I restriction modification DNA specificity domain YP_005048018.1 PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM) YP_005048020.1 PFAM: N-6 DNA Methylase; Type I restriction modification DNA specificity domain YP_005048022.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005048023.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005048025.1 PFAM: Acetyltransferase (GNAT) family YP_005048026.1 PFAM: Bacterial regulatory proteins, tetR family YP_005048027.1 PFAM: IstB-like ATP binding protein YP_005048028.1 PFAM: Integrase core domain YP_005048029.1 PFAM: Type III restriction enzyme, res subunit YP_005048030.1 PFAM: DNA methylase YP_005048031.1 PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain YP_005048032.1 PFAM: Helix-turn-helix YP_005048033.1 PFAM: Integrase core domain YP_005048034.1 PFAM: Transposase YP_005048035.1 PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain YP_005048036.1 PFAM: Group II intron, maturase-specific domain; Reverse transcriptase (RNA-dependent DNA polymerase) YP_005048038.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005048039.1 PFAM: BlaR1 peptidase M56 YP_005048040.1 PFAM: Penicillinase repressor YP_005048041.1 PFAM: Recombinase; Resolvase, N terminal domain YP_005048043.1 PFAM: Recombinase; Resolvase, N terminal domain YP_005048045.1 PFAM: N-acetylmuramoyl-L-alanine amidase; LysM domain YP_005048046.1 PFAM: Holin family; TIGRFAM: toxin secretion/phage lysis holin YP_005048047.1 PFAM: Glycosyl hydrolases family 18 YP_005048050.1 PFAM: Protein of unknown function (DUF1142); TIGRFAM: phage minor structural protein, N-terminal region YP_005048052.1 PFAM: Phage tail protein; TIGRFAM: putative phage tail component, N-terminal domain YP_005048057.1 PFAM: Abi-like protein YP_005048059.1 PFAM: VRR-NUC domain YP_005048060.1 PFAM: HTH domain YP_005048061.1 PFAM: ABC transporter YP_005048062.1 PFAM: Predicted permease YP_005048063.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005048064.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005048065.1 PFAM: Metallo-beta-lactamase superfamily YP_005048067.1 PFAM: Transposase YP_005048069.1 PFAM: Transposase DDE domain YP_005048070.1 PFAM: Group II intron, maturase-specific domain; Reverse transcriptase (RNA-dependent DNA polymerase) YP_005048071.1 PFAM: BFD-like [2Fe-2S] binding domain YP_005048072.1 PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase YP_005048073.1 PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase YP_005048074.1 PFAM: Bacterial regulatory protein, arsR family YP_005048075.1 PFAM: Recombinase; Resolvase, N terminal domain YP_005048077.1 PFAM: Recombinase; Resolvase, N terminal domain YP_005048079.1 PFAM: N-acetylmuramoyl-L-alanine amidase; LysM domain YP_005048080.1 PFAM: Holin family; TIGRFAM: toxin secretion/phage lysis holin YP_005048081.1 PFAM: Glycosyl hydrolases family 18 YP_005048084.1 PFAM: Protein of unknown function (DUF1142); TIGRFAM: phage minor structural protein, N-terminal region YP_005048085.1 PFAM: Phage tail protein; TIGRFAM: putative phage tail component, N-terminal domain YP_005048089.1 TIGRFAM: phage major tail protein, phi13 family YP_005048091.1 PFAM: Bacteriophage protein of unknown function (DUF646); TIGRFAM: phage protein, HK97 gp10 family YP_005048092.1 PFAM: Phage head-tail joining protein YP_005048093.1 PFAM: Phage QLRG family, putative DNA packaging YP_005048094.1 PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family YP_005048095.1 PFAM: Clp protease YP_005048096.1 PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family YP_005048097.1 PFAM: Phage Terminase YP_005048099.1 PFAM: AIG2-like family YP_005048100.1 PFAM: Putative amidoligase enzyme YP_005048104.1 PFAM: DNA methylase; ParB-like nuclease domain YP_005048105.1 PFAM: ParB-like nuclease domain; DNA methylase YP_005048107.1 PFAM: Phage terminase, small subunit YP_005048108.1 PFAM: HNH endonuclease YP_005048111.1 PFAM: VRR-NUC domain YP_005048112.1 PFAM: Bifunctional DNA primase/polymerase, N-terminal YP_005048114.1 PFAM: BRO family, N-terminal domain; Phage antirepressor protein KilAC domain YP_005048115.1 PFAM: 3'-5' exonuclease; DNA polymerase family A YP_005048117.1 manually curated YP_005048118.1 PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; manually curated YP_005048120.1 PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005048123.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005048124.1 PFAM: Peptidase propeptide and YPEB domain YP_005048127.1 PFAM: tRNA (Uracil-5-)-methyltransferase; TRAM domain; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA YP_005048128.1 PFAM: Methyltransferase domain YP_005048129.1 PFAM: RibD C-terminal domain YP_005048130.1 TIGRFAM: uncharacterized domain HDIG YP_005048131.1 PFAM: ArsC family; TIGRFAM: transcriptional regulator, Spx/MgsR family YP_005048132.1 PFAM: Protein of unknown function (DUF3298) YP_005048133.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_005048135.1 PFAM: Aldehyde dehydrogenase family YP_005048136.1 PFAM: Iron-containing alcohol dehydrogenase YP_005048137.1 PFAM: Metallo-beta-lactamase superfamily YP_005048138.1 PFAM: McrBC 5-methylcytosine restriction system component YP_005048139.1 PFAM: AAA domain (dynein-related subfamily) YP_005048142.1 PFAM: ABC transporter YP_005048143.1 PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family YP_005048144.1 PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_005048146.1 PFAM: Helix-turn-helix YP_005048148.1 PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase YP_005048150.1 PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_005048151.1 PFAM: ABC transporter YP_005048152.1 PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family YP_005048153.1 PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family YP_005048155.1 PFAM: Transposase, Mutator family YP_005048156.1 PFAM: Bacterial regulatory protein, arsR family YP_005048159.1 PFAM: NLPA lipoprotein; TIGRFAM: lipoprotein, YaeC family YP_005048160.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_005048161.1 PFAM: ABC transporter YP_005048162.1 PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein YP_005048163.1 PFAM: Acetyltransferase (GNAT) family YP_005048164.1 PFAM: Nitrogenase component 1 type Oxidoreductase; manually curated YP_005048165.1 PFAM: Nitrogenase component 1 type Oxidoreductase YP_005048166.1 PFAM: Transposase DDE domain; Transposase domain (DUF772); manually curated YP_005048167.1 PFAM: IstB-like ATP binding protein YP_005048168.1 PFAM: Transposase, Mutator family YP_005048169.1 PFAM: Transposase DDE domain YP_005048170.1 PFAM: HlyD family secretion protein YP_005048171.1 PFAM: ABC transporter YP_005048172.1 PFAM: Predicted permease YP_005048174.1 PFAM: Protein of unknown function (DUF1700); manually curated YP_005048175.1 PFAM: Transcriptional regulator PadR-like family YP_005048177.1 manually curated YP_005048180.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005048182.1 PFAM: Transposase YP_005048183.1 PFAM: Integrase core domain YP_005048184.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyrinic acid a,c-diamide synthase YP_005048185.1 PFAM: Methyltransferase domain YP_005048186.1 PFAM: SPFH domain / Band 7 family YP_005048187.1 PFAM: FlgN protein; Peptidase family M23 YP_005048188.1 PFAM: Protein of unknown function, DUF583 YP_005048189.1 PFAM: Sporulation protein YunB (Spo_YunB); TIGRFAM: sporulation protein YunB YP_005048190.1 PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family YP_005048191.1 PFAM: Transposase DDE domain; Transposase domain (DUF772); manually curated YP_005048192.1 PFAM: Predicted permease YP_005048193.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_005048194.1 PFAM: ABC transporter YP_005048195.1 PFAM: Outer membrane efflux protein YP_005048197.1 PFAM: Amino acid kinase family; TIGRFAM: glutamate 5-kinase YP_005048198.1 PFAM: Cysteine-rich secretory protein family; TIGRFAM: uncharacterized protein, YkwD family YP_005048201.1 PFAM: Protein of unknown function, DUF486 YP_005048202.1 manually curated YP_005048205.1 PFAM: Carbohydrate binding domain (family 25) YP_005048206.1 PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase, putative, Aquifex type YP_005048207.1 PFAM: Citrate synthase YP_005048208.1 PFAM: Bacterial regulatory proteins, gntR family; FCD domain YP_005048209.1 PFAM: Protein of unknown function (DUF445) YP_005048211.1 PFAM: Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: lon-related putative ATP-dependent protease YP_005048212.1 PFAM: Acetyltransferase (GNAT) family; TIGRFAM: ribosomal-protein-alanine acetyltransferase YP_005048213.1 PFAM: Glycoprotease family; TIGRFAM: universal bacterial protein YeaZ YP_005048214.1 PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family YP_005048215.1 PFAM: Amidohydrolase family YP_005048217.1 PFAM: Major Facilitator Superfamily YP_005048218.1 PFAM: FtsH Extracellular; ATPase family associated with various cellular activities (AAA) YP_005048219.1 PFAM: Transcriptional regulator PadR-like family YP_005048220.1 PFAM: Protein of unknown function (DUF2812) YP_005048221.1 manually curated YP_005048222.1 PFAM: Aldo/keto reductase family YP_005048224.1 PFAM: Transposase, Mutator family YP_005048226.1 PFAM: Protein of unknown function (DUF1696) YP_005048227.1 PFAM: MerR family regulatory protein; manually curated YP_005048229.1 PFAM: Ribosomal protein S9/S16 YP_005048230.1 PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type YP_005048231.1 PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I YP_005048232.1 PFAM: ROK family; TIGRFAM: ROK family protein (putative glucokinase) YP_005048233.1 PFAM: Cobalt transport protein YP_005048234.1 PFAM: ABC transporter; Cobalt ATP-binding cassette C terminal; manually curated YP_005048235.1 PFAM: Methyltransferase small domain YP_005048236.1 PFAM: ABC transporter; Cobalt ATP-binding cassette C terminal YP_005048237.1 PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17 YP_005048238.1 PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type YP_005048239.1 PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type YP_005048240.1 PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11 YP_005048241.1 PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13 YP_005048242.1 PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type YP_005048243.1 PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1 YP_005048245.1 PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I YP_005048246.1 PFAM: Adenylate kinase, active site lid; Adenylate kinase; TIGRFAM: adenylate kinases YP_005048247.1 PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit YP_005048248.1 PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle YP_005048249.1 PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle YP_005048250.1 PFAM: Ribosomal protein S5, C-terminal domain; Ribosomal protein S5, N-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type YP_005048251.1 PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type YP_005048252.1 PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type YP_005048253.1 PFAM: Ribosomal protein S8 YP_005048254.1 PFAM: Ribosomal protein S14p/S29e; manually curated YP_005048255.1 PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5 YP_005048256.1 PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle YP_005048257.1 PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle YP_005048258.1 PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17 YP_005048259.1 PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29 YP_005048260.1 PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle YP_005048261.1 PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type; ribosomal protein S3, eukaryotic/archaeal type YP_005048262.1 PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type; manually curated YP_005048263.1 PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle; manually curated YP_005048264.1 PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar YP_005048265.1 PFAM: Ribosomal protein L23 YP_005048266.1 PFAM: Ribosomal protein L4/L1 family; TIGRFAM: 50S ribosomal protein L4, bacterial/organelle YP_005048267.1 PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial YP_005048268.1 PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle YP_005048269.1 PFAM: TM2 domain YP_005048270.1 PFAM: Polysaccharide biosynthesis protein YP_005048271.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_005048272.1 PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, sigma-B/F/G subfamily YP_005048274.1 PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor YP_005048275.1 PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial YP_005048276.1 PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA YP_005048278.1 PFAM: Copper amine oxidase N-terminal domain; Glycosyl hydrolases family 18; Bacterial SH3 domain YP_005048280.1 PFAM: PilZ domain YP_005048281.1 PFAM: Glycosyl hydrolase family 9; Dockerin type I repeat; Carbohydrate binding domain; N-terminal ig-like domain of cellulase YP_005048282.1 PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL YP_005048283.1 PFAM: Chaperonin 10 Kd subunit YP_005048284.1 PFAM: Dockerin type I repeat YP_005048285.1 PFAM: Divergent AAA domain YP_005048286.1 PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase YP_005048287.1 PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit YP_005048288.1 PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_005048289.1 PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_005048290.1 PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase YP_005048291.1 PFAM: Imidazoleglycerol-phosphate dehydratase YP_005048292.1 PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase YP_005048293.1 PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase YP_005048294.1 PFAM: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase YP_005048295.1 PFAM: tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: ATP phosphoribosyltransferase, regulatory subunit; histidyl-tRNA synthetase YP_005048296.1 PFAM: Cellulase (glycosyl hydrolase family 5); Dockerin type I repeat YP_005048299.1 PFAM: Transposase DDE domain; Transposase domain (DUF772); manually curated YP_005048301.1 PFAM: Bacterial regulatory proteins, tetR family YP_005048302.1 PFAM: VIT family; Rubrerythrin YP_005048303.1 PFAM: S-layer homology domain YP_005048304.1 PFAM: UvrD/REP helicase; TIGRFAM: ATP-dependent DNA helicase PcrA YP_005048305.1 PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein YP_005048306.1 PFAM: Nitrogen regulatory protein P-II YP_005048307.1 PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter YP_005048308.1 PFAM: Response regulator receiver domain; ANTAR domain YP_005048309.1 PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I YP_005048310.1 PFAM: Glycosyl transferase family 2 YP_005048311.1 PFAM: DNA methylase YP_005048313.1 PFAM: CAAX amino terminal protease family YP_005048314.1 PFAM: Helix-turn-helix; Peptidase S24-like YP_005048315.1 PFAM: HD domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005048316.1 PFAM: PAS fold YP_005048317.1 PFAM: Cellulose binding domain; Polysaccharide deacetylase; manually curated YP_005048318.1 PFAM: Protein of unknown function (DUF1565) YP_005048319.1 PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: GDP-mannose 4,6-dehydratase YP_005048320.1 PFAM: Nucleotidyl transferase YP_005048321.1 PFAM: NAD dependent epimerase/dehydratase family YP_005048323.1 PFAM: Glycosyl transferases group 1; Domain of unknown function (DUF3492) YP_005048325.1 PFAM: NAD dependent epimerase/dehydratase family YP_005048327.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain YP_005048330.1 PFAM: Serpin (serine protease inhibitor); Dockerin type I repeat YP_005048331.1 PFAM: AMP-binding enzyme YP_005048332.1 PFAM: Protein of unknown function (DUF901); Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: small GTP-binding protein domain YP_005048333.1 PFAM: Macro domain YP_005048335.1 PFAM: Fic/DOC family YP_005048337.1 PFAM: Bacterial regulatory proteins, luxR family; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-H factor YP_005048338.1 PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3 YP_005048339.1 PFAM: RNase3 domain YP_005048340.1 PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase YP_005048341.1 PFAM: Serine acetyltransferase, N-terminal; Bacterial transferase hexapeptide (three repeats); TIGRFAM: serine O-acetyltransferase YP_005048342.1 PFAM: Membrane protein of unknown function YP_005048343.1 PFAM: HhH-GPD superfamily base excision DNA repair protein; 8-oxoguanine DNA glycosylase, N-terminal domain; TIGRFAM: 8-oxoguanine DNA-glycosylase (ogg) YP_005048345.1 PFAM: Protein of unknown function (DUF322) YP_005048346.1 PFAM: YtxC-like family; TIGRFAM: putative sporulation protein YtxC YP_005048349.1 PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase YP_005048350.1 PFAM: Domain of unknown function (DUF378) YP_005048352.1 PFAM: Small, acid-soluble spore proteins, alpha/beta type YP_005048354.1 PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family YP_005048355.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005048356.1 PFAM: CoA binding domain YP_005048357.1 PFAM: Uncharacterized protein family UPF0029; Domain of unknown function (DUF1949); TIGRFAM: uncharacterized protein, YigZ family YP_005048358.1 PFAM: Peptidase S26; Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type YP_005048360.1 PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain YP_005048362.1 PFAM: dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) YP_005048363.1 PFAM: Collagenase; Peptidase family U32; manually curated YP_005048364.1 PFAM: Metalloenzyme superfamily YP_005048365.1 PFAM: Cell division protein ZapA YP_005048366.1 PFAM: Transposase DDE domain; manually curated YP_005048367.1 PFAM: Glycosyl hydrolase family 48; Dockerin type I repeat YP_005048368.1 PFAM: Cellulose binding domain YP_005048369.1 PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-I factor; RNA polymerase sigma factor, sigma-70 family YP_005048370.1 PFAM: PspC domain YP_005048372.1 PFAM: Dockerin type I repeat; Glycosyl hydrolase family 53 YP_005048373.1 PFAM: Uncharacterised protein family UPF0005 YP_005048374.1 PFAM: Hemerythrin HHE cation binding domain; TIGRFAM: hemerythrin-like metal-binding domain YP_005048375.1 manually curated YP_005048376.1 PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase YP_005048377.1 PFAM: 3D domain; Domain of unknown function (DUF348); G5 domain YP_005048379.1 PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family YP_005048380.1 PFAM: tRNA synthetases class I (M); Anticodon-binding domain; Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase YP_005048382.1 PFAM: Nucleoside recognition YP_005048383.1 PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family YP_005048384.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family YP_005048385.1 PFAM: Methyltransferase small domain YP_005048386.1 PFAM: 4Fe-4S binding domain YP_005048387.1 PFAM: PSP1 C-terminal conserved region; manually curated YP_005048388.1 PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: DNA polymerase III, delta' subunit; DNA polymerase III, subunit gamma and tau YP_005048389.1 PFAM: Protein of unknown function (DUF327) YP_005048390.1 PFAM: Thymidylate kinase; TIGRFAM: thymidylate kinase YP_005048391.1 PFAM: Orn/Lys/Arg decarboxylase, C-terminal domain; Orn/Lys/Arg decarboxylase, major domain YP_005048393.1 PFAM: Domain of unknown function (DUF1730); TIGRFAM: iron-sulfur cluster binding protein, putative YP_005048394.1 PFAM: Dockerin type I repeat; Putative esterase YP_005048395.1 PFAM: Copper amine oxidase N-terminal domain; Beta propeller domain YP_005048396.1 PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III YP_005048398.1 PFAM: Amidohydrolase YP_005048399.1 PFAM: HTH domain; Biotin protein ligase C terminal domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: BirA biotin operon repressor domain; birA, biotin-[acetyl-CoA-carboxylase] ligase region YP_005048401.1 PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_005048402.1 PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; FolB domain YP_005048403.1 PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase YP_005048404.1 TIGRFAM: phosphoesterase, MJ0936 family YP_005048407.1 PFAM: Iron-containing alcohol dehydrogenase YP_005048408.1 PFAM: Transcriptional regulator PadR-like family YP_005048410.1 PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain; manually curated YP_005048411.1 PFAM: DHH family; DRTGG domain; DHHA2 domain; CBS domain YP_005048412.1 PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I YP_005048413.1 PFAM: Branched-chain amino acid transport system / permease component YP_005048414.1 PFAM: ABC transporter; manually curated YP_005048415.1 PFAM: family YP_005048416.1 PFAM: RimK-like ATP-grasp domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: cyanophycin synthetase YP_005048417.1 PFAM: Peptidase family S51; TIGRFAM: cyanophycinase YP_005048419.1 PFAM: Amidohydrolase family; TIGRFAM: isoaspartyl dipeptidase IadA YP_005048420.1 PFAM: LexA DNA binding domain YP_005048421.1 PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase YP_005048422.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain YP_005048423.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; manually curated YP_005048426.1 PFAM: Thiamine pyrophosphate enzyme, central domain; GAF domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_005048428.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2179) YP_005048429.1 PFAM: alpha/beta hydrolase fold YP_005048431.1 PFAM: FlgN protein YP_005048432.1 PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS YP_005048433.1 PFAM: Flagellar hook-associated protein 2 C-terminus; manually curated YP_005048434.1 PFAM: FlaG protein YP_005048435.1 PFAM: NAD dependent epimerase/dehydratase family YP_005048436.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase YP_005048437.1 PFAM: Glycosyltransferase family 28 C-terminal domain; TIGRFAM: pseudaminic acid biosynthesis-associated protein PseG YP_005048438.1 PFAM: GlcNAc-PI de-N-acetylase YP_005048439.1 PFAM: Formyl transferase YP_005048440.1 PFAM: SAF domain; NeuB family; TIGRFAM: pseudaminic acid synthase YP_005048441.1 PFAM: NLI interacting factor-like phosphatase; TIGRFAM: FkbH-like domain; HAD-superfamily phosphatase, subfamily IIIC YP_005048442.1 PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein YP_005048443.1 TIGRFAM: pseudaminic acid biosynthesis N-acetyl transferase YP_005048444.1 PFAM: Cytidylyltransferase; manually curated YP_005048445.1 PFAM: Methyltransferase domain; TIGRFAM: pseudaminic acid biosynthesis-associated methylase YP_005048446.1 PFAM: Polysaccharide biosynthesis protein YP_005048447.1 PFAM: Protein of unknown function DUF115 YP_005048449.1 PFAM: Protein of unknown function DUF115 YP_005048450.1 PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region YP_005048451.1 PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region YP_005048452.1 PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region YP_005048453.1 PFAM: Global regulator protein family; TIGRFAM: carbon storage regulator (csrA) YP_005048454.1 PFAM: FliW protein YP_005048456.1 PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region; TIGRFAM: flagellar hook-associated protein 3 YP_005048457.1 PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar hook-associated protein FlgK YP_005048458.1 PFAM: von Willebrand factor type A domain; Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar hook-associated protein FlgK YP_005048459.1 PFAM: FlgN protein YP_005048460.1 PFAM: Anti-sigma-28 factor, FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor FlgM YP_005048461.1 TIGRFAM: flagellar operon protein TIGR03826 YP_005048462.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein YP_005048463.1 PFAM: Mechanosensitive ion channel YP_005048466.1 PFAM: Peptidase C26 YP_005048467.1 PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor YP_005048469.1 PFAM: Rubredoxin YP_005048470.1 PFAM: Transposase IS200 like YP_005048471.1 PFAM: Protein of unknown function (DUF1256); TIGRFAM: putative sporulation protein YyaC YP_005048472.1 PFAM: Stage II sporulation protein E (SpoIIE); PAS fold; TIGRFAM: PAS domain S-box; manually curated YP_005048473.1 manually curated YP_005048474.1 PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31 YP_005048475.1 PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho; manually curated YP_005048477.1 PFAM: ABC transporter YP_005048478.1 PFAM: FecCD transport family YP_005048479.1 PFAM: Periplasmic binding protein YP_005048480.1 PFAM: Dockerin type I repeat; CotH protein; manually curated YP_005048481.1 PFAM: PP-loop family YP_005048482.1 PFAM: Predicted periplasmic protein (DUF2233) YP_005048485.1 PFAM: Nucleotidyl transferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase YP_005048486.1 PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN) YP_005048487.1 PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18 YP_005048488.1 PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_005048489.1 PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6 YP_005048490.1 PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain YP_005048491.1 manually curated YP_005048492.1 PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-I factor; RNA polymerase sigma factor, sigma-70 family YP_005048493.1 PFAM: Domain of unknown function (DUF368) YP_005048495.1 PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein YP_005048496.1 PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase, bacterial type YP_005048497.1 PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase YP_005048498.1 PFAM: ACT domain; Small subunit of acetolactate synthase; TIGRFAM: acetolactate synthase, small subunit YP_005048499.1 PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type YP_005048501.1 PFAM: Mannosyltransferase (PIG-V)) YP_005048502.1 PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_005048503.1 PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF) YP_005048504.1 PFAM: Bacterial protein of unknown function (DUF951) YP_005048505.1 PFAM: Putative peptidoglycan binding domain; Zinc carboxypeptidase; LysM domain YP_005048507.1 PFAM: Helix-turn-helix YP_005048508.1 PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase III, bacteria and conjugative plasmid YP_005048509.1 PFAM: YabG peptidase U57; TIGRFAM: sporulation peptidase YabG YP_005048510.1 PFAM: Transglutaminase-like superfamily; manually curated YP_005048511.1 PFAM: Protein of unknown function DUF58 YP_005048512.1 PFAM: ATPase family associated with various cellular activities (AAA) YP_005048513.1 PFAM: Cellulose binding domain; Cohesin domain; manually curated YP_005048514.1 PFAM: Polysaccharide deacetylase YP_005048515.1 PFAM: Transposase DDE domain YP_005048516.1 PFAM: Dockerin type I repeat; Carbohydrate binding module (family 6) YP_005048517.1 PFAM: RDD family YP_005048518.1 PFAM: RDD family YP_005048520.1 PFAM: Protein of unknown function (DUF3298) YP_005048521.1 PFAM: Bacterial regulatory proteins, lacI family; family YP_005048522.1 PFAM: Predicted SPOUT methyltransferase; TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH YP_005048523.1 PFAM: Metallo-beta-lactamase superfamily YP_005048524.1 PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_005048525.1 PFAM: YycH protein YP_005048528.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_005048529.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_005048531.1 PFAM: Cytidylyltransferase YP_005048532.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing YP_005048533.1 PFAM: SAF domain; NeuB family; TIGRFAM: N-acetylneuraminate synthase YP_005048534.1 TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family YP_005048535.1 PFAM: Nucleotidyl transferase YP_005048536.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_005048537.1 PFAM: NAD dependent epimerase/dehydratase family YP_005048538.1 PFAM: Polysaccharide biosynthesis protein YP_005048539.1 PFAM: Polysaccharide biosynthesis protein; manually curated YP_005048540.1 PFAM: Capsule polysaccharide biosynthesis protein YP_005048541.1 PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_005048542.1 PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase YP_005048543.1 PFAM: Glycosyl transferase family 2 YP_005048545.1 PFAM: Glycosyl transferase family 2; manually curated YP_005048546.1 manually curated YP_005048547.1 PFAM: NAD dependent epimerase/dehydratase family; manually curated YP_005048548.1 PFAM: NAD dependent epimerase/dehydratase family YP_005048549.1 PFAM: Bacterial sugar transferase YP_005048550.1 PFAM: O-Antigen ligase; manually curated YP_005048552.1 PFAM: Chain length determinant protein YP_005048553.1 PFAM: S-layer homology domain; Bacterial Ig-like domain (group 4) YP_005048554.1 PFAM: S-layer homology domain; Bacterial Ig-like domain (group 4) YP_005048555.1 PFAM: Small, acid-soluble spore proteins, alpha/beta type YP_005048556.1 PFAM: Cell Wall Hydrolase YP_005048558.1 PFAM: CBS domain YP_005048559.1 PFAM: PGAP1-like protein; manually curated YP_005048560.1 PFAM: Reverse transcriptase (RNA-dependent DNA polymerase) YP_005048561.1 PFAM: Cellulose binding domain; Cohesin domain; manually curated YP_005048562.1 PFAM: Cellulose binding domain; Cohesin domain YP_005048563.1 PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase YP_005048564.1 PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase YP_005048565.1 PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit YP_005048566.1 PFAM: Accessory gene regulator B YP_005048567.1 PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit YP_005048568.1 PFAM: ParB-like nuclease domain; KorB domain; TIGRFAM: ParB-like partition proteins YP_005048569.1 PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB YP_005048570.1 PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A YP_005048571.1 PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain; tRNA modification GTPase TrmE YP_005048572.1 PFAM: R3H domain YP_005048573.1 PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; manually curated YP_005048574.1 PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD YP_005048575.1 PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial YP_005048576.1 PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; manually curated; IMG reference gene:2507487056_SP